LOCUS       DATDNM010000001         3070 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2029069, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000001 DATDNM010000000
VERSION     DATDNM010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3070
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2029069"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            338..571
                     /locus_tag="VI413_00005"
     CDS             338..571
                     /locus_tag="VI413_00005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913031.1"
                     /translation="MNSLLFVLASSFKMISGVIEIIAGIIVLIRAEIGGYIVSAWPTA
                     ITLILLAGFNYRDVSVHDLVMAISAFRWPGYLE"
     gene            596..1243
                     /locus_tag="VI413_00010"
     CDS             596..1243
                     /locus_tag="VI413_00010"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6913032.1"
                     /translation="MVTTEKLTEVEIIQRVLEGEKALYEMIVRRFNPYLYKVGRAYNY
                     NHEDTQDLMQETFIDAYRNLSQFEGRADFKTWIIRIMMNNCYRKKEKSSFKNEIMQEV
                     NDRSRPLFTNANNDTDKIIQNHELGHIIEKGLSRIPFDYRIVFSLREINGMNVSETAD
                     LLDISEANVKVRLNRAKAMLRKEIEKTYSAAELFEFNLIYCNAMVENVMKKINEL"
     gene            1251..1898
                     /gene="folE"
                     /locus_tag="VI413_00015"
     CDS             1251..1898
                     /gene="folE"
                     /locus_tag="VI413_00015"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: protein motif:HMM:NF006824.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEY6913033.1"
                     /translation="MKNTLNIDYRRTAPELLIRPNVIELSENEKINKIEYHFAQIMRT
                     LGLDLYDDSLSGTPNRVAKMYVKEMFSGLNPENHPDISLFENKYGYKKMLVEKDITLY
                     SNCEHHFVPIIGKVHVAYIPDRQVIGLSKINRLVQYYAKRPQVQERLTVQLSDALKEI
                     LQHNDVAVVIEADHLCVASRGIKDTSSKTTTAIYSGQFENESVRQEFLAYIKNDQ"
     gene            1906..2571
                     /locus_tag="VI413_00020"
     CDS             1906..2571
                     /locus_tag="VI413_00020"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY6913034.1"
                     /translation="METVKIISLEHLTHDVVRLVVEKPGTISYLPGQAVDLSINQPGW
                     EKEKRPFTFTSLPEDDHLEFSIKTYPARQGVTNKLLSLHAGDELFIYKPFGDITYKGE
                     GVFIAGGAGVTPFIAIFKQLERNNQVGTNKLIFANKTKADIILEERFHTLLGNKFINI
                     LSDEEIDGYEHGYISAELIKKHMDGQSNYFYLCGPPPMMTAVEKHLSSLGITDSFIVK
                     EAF"
     gene            2671..>3070
                     /locus_tag="VI413_00025"
     CDS             2671..>3070
                     /locus_tag="VI413_00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008782035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HEY6913035.1"
                     /translation="MENKDIRWQQRFINFDKAFKQLERFKEVENLNELEKQGLIKAFE
                     YTFELSWKTLQDLLKEKGYIDIVGPRPVIEQSFQDGYIADGNGWMRMHKSRNLTSHTY
                     DEQTAEEIITNIRKEYYYLLRDLRLRLQNER"
BASE COUNT         1045 a          558 c          637 g          830 t
ORIGIN      
        1 aaaatttata gtaaaatttg ctacctgtaa attaaaagaa ttcctctcta ctctgctaaa
       61 ggttgtagat tctcatgttg gctgtaaatg ccaatgacga ccgcttccca attatccaat
      121 caaccaaaat catttgtaac ctttccaaaa ttgatttact ctaatcagat agtaacaatt
      181 taaaaggtaa agaaaatgga aactacaaac attcaaccgc agctgataaa atcactaaag
      241 gtgataaagt gtacattcgg aactgttcct gacggggcag aaggcaggag aattcatcaa
      301 cctgttaacc catggagaaa aaaaactcaa tccttcaatg aacagcctat tgttcgttct
      361 tgcatcatca tttaagatga tttccggggt aattgaaatc attgccggca ttattgtgtt
      421 aataagagca gaaattggcg gatacattgt ctccgcctgg cctactgcca ttacactgat
      481 attactggcc ggattcaatt atagggatgt atcagtacat gatttggtga tggccatttc
      541 ggcttttaga tggcctggtt atttagaata attgcaacat taaaaataca atcctatggt
      601 tacaactgaa aagcttaccg aagtggaaat tatccaacgt gttttagaag gggagaaagc
      661 actctatgag atgatcgtaa ggcgttttaa cccttacctg tacaaagttg gaagagccta
      721 taactataat cacgaagaca cccaggattt gatgcaagag acctttattg acgcgtacag
      781 gaacctgtcg cagtttgagg gccgcgctga ttttaaaacc tggattattc gcatcatgat
      841 gaataactgc taccgaaaaa aagagaaatc aagttttaaa aatgaaatta tgcaagaagt
      901 aaacgaccgt tcaagacccc tgtttaccaa cgcgaataat gatacggaca aaatcattca
      961 aaatcatgaa ttagggcata tcatcgaaaa aggcctgagc cgtattcctt ttgattaccg
     1021 gattgtattt tcattgcggg aaataaacgg gatgaatgtt tcagaaacgg cagaccttct
     1081 ggacatcagc gaagccaacg taaaagtaag gttgaacagg gcaaaagcca tgttaagaaa
     1141 ggaaatcgaa aagacctatt ctgccgccga gctgtttgaa tttaatttaa tctattgcaa
     1201 tgcaatggta gaaaatgtaa tgaagaaaat aaacgaactt tgatgacgcc atgaaaaaca
     1261 cattaaatat tgactatagg agaactgccc cggagctgct tattcgtcct aatgttattg
     1321 agttgagcga aaatgaaaaa atcaataaga tagaatatca ttttgcccag atcatgcgca
     1381 ctctgggact tgatttgtat gacgacagtt taagcggcac ccccaacagg gtggccaaaa
     1441 tgtatgtgaa agaaatgttc agcggattaa accctgagaa ccatcctgat atcagtcttt
     1501 ttgaaaacaa gtatggctat aagaagatgc ttgtggaaaa agacattacc ttatattcca
     1561 attgtgaaca tcatttcgtg cccatcatcg gaaaggtaca tgtggcctat attccggatc
     1621 ggcaggtgat cggcttgtct aaaatcaacc ggttggtgca gtattacgcc aaacggcctc
     1681 aggttcagga acgcctaacg gttcaactgt cagatgcctt aaaagaaata ttacagcaca
     1741 acgatgtggc cgttgttata gaagccgacc acctgtgtgt agcttccaga ggcataaagg
     1801 acacctccag caaaacaacg acggccattt attcgggtca gtttgagaat gaatccgtca
     1861 ggcaggagtt tttagcatac attaaaaacg atcaataatt tagctatgga aacggtcaaa
     1921 attatatcat tggaacatct gacccatgat gtggtaaggt tagtagttga aaaacctgga
     1981 acgatcagtt atctaccggg acaggcagtt gacctgtcga ttaatcaacc cggttgggaa
     2041 aaggaaaaaa gaccctttac atttacctcc ttgcctgagg atgatcacct ggaattttcc
     2101 attaagacct accctgcccg ccagggagtt actaataaat tactttcgct tcatgccgga
     2161 gatgagttgt ttatttacaa accttttggg gatattacct ataaagggga gggggttttt
     2221 attgcaggcg gggcaggggt tacccctttc atcgctattt ttaaacagct tgaacggaac
     2281 aatcaggtgg gtactaacaa actcattttt gccaacaaga ccaaggccga tattattctg
     2341 gaagaaaggt ttcacacatt gctgggcaat aaattcatca acatcctttc tgatgaagaa
     2401 attgatggat atgaacacgg gtatatttca gcggagttaa ttaaaaaaca catggatggg
     2461 caatccaact atttttacct ctgtggacca ccaccgatga tgacggccgt agaaaagcac
     2521 ttatcctcat tgggaatcac ggacagcttc attgtaaaag aggcgtttta acaggaaatg
     2581 tttttggcca tgaaaacgat aaaagaatta tttgaataaa acattgattg ccagatattg
     2641 tatatttgta agtattaaat gatcaattga atggaaaaca aagacattcg ctggcagcaa
     2701 agatttatca atttcgataa agctttcaaa caattggaaa gattcaagga agttgagaac
     2761 ttaaacgaat tggaaaaaca aggattaatt aaggcatttg aatacacttt tgaattaagc
     2821 tggaaaacac ttcaagacct gttaaaagaa aagggttata ttgatatagt tgggcccaga
     2881 cctgtgatcg agcaaagttt tcaggatgga tatattgctg atggaaatgg atggatgcga
     2941 atgcataaaa gtcgaaattt gacgagccat acctatgatg aacaaactgc cgaagaaatc
     3001 attaccaaca ttcgcaagga atattattat ctattaagag atttacgact tagactgcaa
     3061 aatgaaagat
//
LOCUS       DATDNM010000002         3922 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_534289, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000002 DATDNM010000000
VERSION     DATDNM010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3922
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_534289"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VI413_00030"
     CDS             complement(<1..232)
                     /locus_tag="VI413_00030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913036.1"
                     /translation="MRKFILFILLSGIILHAEAKSSPHGDKLKVDCAVCHVTENWTRI
                     KPGFDHNKTKFPLTGQHKMIDCRKCHVSLDFSK"
     gene            complement(287..1750)
                     /locus_tag="VI413_00035"
     CDS             complement(287..1750)
                     /locus_tag="VI413_00035"
                     /inference="COORDINATES: protein motif:HMM:NF024702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEY6913037.1"
                     /translation="MKNLRLSIIMLLGIVIFTGCDDDSIFYPKVKTANGITTVSGIRA
                     GGLEQAMLLCLGTVKHLVINDTIDSRDFETMRDDMPNLSVLDLSNATIAAYNGYEGTA
                     GTRVYRYPANAIPEFAFYDPAKSKGKKSLASITFPKSIKSIRDYAFNRCTGLKGTLNI
                     PVSVKDTIGKSAFSFCENLTGLTLSGVNYIGESAFQGCTALAGTLVIPDSVFTIKPWA
                     FADCANINSISISGTVNNISAATFYNCGAVFSVDPVNTSYSSLEDVLFDFDKFTLIQF
                     PKSKAGTYEVPSTVSTIGAYSFANCTALTAITVPSAVGTVEDYAFMGCTGLVGTFTIS
                     SGVSYIGQHVFDDCPNITAFQIAPDNITFTFADGVLVDLGQMTIKRCVQSKTGGYIVS
                     PDISTIDNSAFSNCTMLTSVTLPEAISYIGQRAFLNCTGLTSIHMNAAAPIDMRHSAT
                     AFEGVKMGQCTLYVPIGAATNYRNAAIWKDFVDILEN"
     gene            complement(1798..3405)
                     /locus_tag="VI413_00040"
     CDS             complement(1798..3405)
                     /locus_tag="VI413_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HEY6913038.1"
                     /translation="MAFSTKTYKFLLIAGLFISVCFNVSAQISPGDLSKSHANLEGVS
                     NCTQCHSVGNKVTREKCLACHKEIKTEIDAHKGYHSSKEVGQKNCAQCHSDHHGRNFD
                     MVRLNKKLFNHNLTGFALKGEHAKQECTACHKPAFIKDPALKKRTGTYLGLNQECLSC
                     HEDYHQGKLSSKCTECHNFNTWKNATGFDHSNTKFPLLGKHKTVACIECHKFEMVNGK
                     KTQRFNGLKFANCTACHEDVHKNKFGQDCKRCHTEESFHFNKSMKSFDHDKTNFKLIG
                     KHKLVDCKECHKTGKLTDPIKHDQCQDCHKDYHNGEFKHRDGTKPDCNQCHTNDGFTP
                     STFTIEKHNKKFKLEGAHLATSCTACHKKDDHWTFSKMGKRCVDCHKNEHKGFIEDKF
                     MPNEDCTICHNVVSWKKISFDHDKTGYKLEGEHANIACAECHYGKNEKGQRTQQFAGT
                     SKECSSCHKDSHAGQFEVNGKTDCARCHGFDKFENSKFDHNTSRFKLDGAHATVKCEE
                     CHKPVMTEKGKYIQYKFNDIACATCHK"
     gene            complement(3416..>3922)
                     /locus_tag="VI413_00045"
     CDS             complement(3416..>3922)
                     /locus_tag="VI413_00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEY6913039.1"
                     /translation="ETLTGDKYTAKSVLLAIGRRGTPRKLHIPGEMTEKVAYRLLEPE
                     EISGKKIVIVGGGDSAVEAALGLCEQNAVTLSYRGENFTRLKKKNAELIHTAMDNGRL
                     VVKFNANLTSIEPDSISYKESDSQQIQKIENDLVYIFAGGELPSQFLKKIGIQITTKY
                     GEAIMKHK"
BASE COUNT         1043 a          783 c          781 g         1315 t
ORIGIN      
        1 ctttagaaaa atctagcgaa acatgacatt tcctgcaatc aatcatttta tgttgaccgg
       61 tgagtggaaa ttttgttttg ttatggtcaa agcctggttt tatcctggtc cagttttctg
      121 tgacgtgaca aacagcacaa tctactttta gcttgtctcc gtgtggcgac gactttgctt
      181 ctgcatgaag tattataccg gataataata tgaataatat gaattttcgc attttttcaa
      241 atttttcgaa gtttagtaat agattggttg aaacctgata cttaaattag ttttccagaa
      301 tatctacaaa atctttccaa atggcagcat tccgatagtt tgttgctgct ccgattggaa
      361 catatagcgt acattgtccc atttttacac cttcaaaagc tgtggctgaa tgtctcatat
      421 ctattggtgc agctgcattc atgtgaatac ttgtcagtcc ggtgcaattt aaaaaggctc
      481 tttgaccaat gtaacttatt gcttcaggta gcgtaacaga tgtaagcatt gtacagttgc
      541 tgaatgcaga attatcaatt gttgaaatgt ccggtgatac aatgtagcca ccagttttag
      601 attgaacaca acgctttatt gtcatttgac ccaagtcaac taatacacca tcggcaaaag
      661 tgaaggtaat gttgtcgggg gcaatttgaa aagcggtgat attagggcag tcatcaaaaa
      721 catgctgtcc aatataggaa actcctgaag aaatggtaaa tgtcccaact aaaccggtac
      781 atcccataaa agcataatct tcaacggtgc cgacggcgga aggaactgta atcgctgtca
      841 gggctgtaca gttggcaaat gaatatgcgc ctatcgttga aactgtagaa ggaacttcat
      901 aggtaccggc tttacttttc ggaaattgga ttaaggtaaa cttatcaaaa tcaaagagaa
      961 catcttctaa gctagaatag ctggtattca ctgggtctac agaaaatact gcgccacaat
     1021 tgtaaaatgt tgcagcactt atattattta cagttccgga aattgatatg gaatttatgt
     1081 tggcacaatc tgcaaatgcc cagggtttta ttgtgaatac agaatcggga ataaccaacg
     1141 taccagctaa agccgtacag ccctgaaaag cagattcccc gatatagttt acacccgaca
     1201 aggttaagcc agtcagattt tcgcaaaaag aaaaagctga ttttcctata gtgtccttaa
     1261 ctgataccgg aatattcaag gtgcctttca gcccggtgca acggttaaat gcataatcac
     1321 ggattgattt tattgatttt ggaaacgtga tagatgccag gctttttttc cctttagatt
     1381 ttgcagggtc ataaaatgca aattcaggta ttgcattggc cggatatctg taaacccttg
     1441 tgcctgcagt tccttcatat ccattgtaag cggctatggt agcattgctc aggtctaaaa
     1501 cagaaagatt cggcatatca tcccgcatcg tttcaaagtc acggctgtca atggtatcat
     1561 taattactaa atgctttacc gtacctaaac agagtaacat ggcttgttcc aatcctcccg
     1621 ccctgatacc actaactgta gttatgccgt ttgccgtttt tacttttggg taaaaaatac
     1681 tgtcatcatc gcaaccggta aagattacga tgcccaatag cattattata gataaacgaa
     1741 gattcttcat gtctggagtt taaaacagat gcttaggttt taatttgtct aaaaaaatta
     1801 tttatgacaa gttgcgcagg caatatcatt aaacttgtat tgaatgtatt ttcctttttc
     1861 agtcattacc ggtttatggc attcttcaca tttaacggtt gcatgggcgc catctaattt
     1921 aaaccgcgag gtgttgtgat caaatttcga gttttcaaac ttatcaaacc catgacagcg
     1981 tgcgcaatca gttttaccgt tcacttcaaa ctggcctgca tgcgaatctt tatggcaact
     2041 cgaacactct ttcgatgttc ccgcaaattg ttgtgtacgt tgtccttttt cgttttttcc
     2101 gtaatgacat tcggcgcagg ctatgttggc gtgttcacct tccagtttat agccggtttt
     2161 gtcatgatcg aaagagattt ttttccaact aactacatta tggcaaatgg tgcaatcttc
     2221 atttggcata aatttatctt caataaaccc tttgtgttca tttttatggc aatcaacaca
     2281 gcgtttaccc attttactga atgtccagtg gtcgtctttt ttgtggcaag cagtacatga
     2341 agtggccaaa tgtgctcctt caagtttgaa ttttttattg tgtttttcaa tggtgaatgt
     2401 acttggcgta aatccatcat ttgtatggca ctggttacaa tcaggtttag tgccatcccg
     2461 atgtttaaat tcaccgttgt gatagtcttt gtggcaatcc tgacactggt cgtgtttaat
     2521 agggtcggtc aatttcccag tcttatggca ttccttacaa tcaaccagtt tatgttttcc
     2581 aatcagtttg aaattggttt tgtcatggtc aaatgacttc atgcttttat tgaaatggaa
     2641 agattcttcg gtatgacagc gtttgcaatc ctgaccaaac ttatttttgt gaacatcctc
     2701 atggcaagca gtacagttgg caaatttcaa tccgttgaat cgttgggttt tcttgccgtt
     2761 taccatttca aacttatggc attctataca ggctactgtt ttgtgtttcc ccaacaatgg
     2821 gaattttgta ttgctgtgat caaagccggt tgcatttttc catgtgttga agttatggca
     2881 ttcagtacat ttagatgata gttttccctg atggtaatct tcgtggcacg ataggcattc
     2941 ctggtttagg ccaaggtagg tacccgttct ttttttcaat gcaggatctt taataaaagc
     3001 cggtttatgg caagctgtac attcctgttt ggcatgttca cctttcaacg caaatccggt
     3061 gaggttatgg ttgaacagct ttttgtttaa gcgcaccatg tcgaaattac gtccgtgatg
     3121 gtcgctgtgg cattgggcac agtttttctg gcctacttct ttcgacgagt gatagccttt
     3181 atgagcatct atttctgttt ttatttcttt gtggcaggca aggcattttt cacgggtcac
     3241 tttgttgccc acactgtggc attgcgtaca attgctaacc ccttccaggt ttgcgtgcga
     3301 cttgctaaga tcgccgggcg atatttgtgc tgacacattg aagcacactg aaataaacag
     3361 tccggcaatg agcaaaaatt tatatgtttt cgtggagaat gccatagttt gtgaattatt
     3421 tatgtttcat tatagcttca ccgtatttgg tcgtgatttg aattcctatc tttttcaaaa
     3481 actggcttgg taattcacct ccggcaaaaa tataaaccaa atcattttca attttttgga
     3541 tttgttgcga atcactttct ttataactta ttgaatctgg ctcaatcgaa gttaggttgg
     3601 cgttaaattt tacaaccaat ctcccattat ccattgccgt atgaatcaat tcggcatttt
     3661 ttttcttcag gcgcgtgaag ttttcaccac ggtaggagag ggtaaccgca ttttgttcgc
     3721 acaagcccag ggcagcttct acagcagaat cgccaccacc aacaattacg attttctttc
     3781 cactgatttc ttccggttcc agcaagcggt aagctacttt ttcggtcatc tcgccgggta
     3841 tatgcagttt ccggggtgta ccccgacgtc caatggccag taacacactt tttgctgtat
     3901 atttatcacc cgtcagtgtt tc
//
LOCUS       DATDNM010000003         2036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1495539, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000003 DATDNM010000000
VERSION     DATDNM010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1495539"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..499
                     /locus_tag="VI413_00050"
     CDS             <1..499
                     /locus_tag="VI413_00050"
                     /inference="COORDINATES: protein motif:HMM:NF024957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HEY6913040.1"
                     /translation="GISTTYFNGIKVGLTTELKMKNNFSLLTGILYNLVYSDKVQGYP
                     NSKQVNYLAYGHFLNLPVMGTYNLPLTRNLKVFAFAGPTLNYGLSQINSGVSTVGTIS
                     SFYTDLYKTSVLNRLDLQVGIGGGIQFKKYQLKAGYDYGLLNLNRSTTNMYQKGWYVS
                     LSVNL"
     gene            641..1945
                     /gene="murF"
                     /locus_tag="VI413_00055"
     CDS             641..1945
                     /gene="murF"
                     /locus_tag="VI413_00055"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEY6913041.1"
                     /translation="MQLYSIFLQHPVICTDSRVCPEGSLFFALKGDNFNANAFALSAL
                     EKGCSFAVVDEAEYAIDDRFILVENVLETLQQLANYHRLQLKTTIIGITGTNGKTTSK
                     ELIAAVLKEKYNILFTQGNLNNHIGVPLTLLQLKPEHELAVIEMGANHQGEIKLLAEI
                     ASPDYGIITNVGKAHLEGFGSFEGVMKTKAELYDFIATFGKKIFINNENSNLLNMAAG
                     AGLTNKEKKVGYTQNINDADAEIIGKIIDCSPFLDMNCQKKDGTIIEIKTHLIGSYNA
                     ENVLAAVAIGSFFGVTDQQIKAGLETYVPQNNRSQLTVTAQNKLVVDAYNANPTSMRA
                     AILNFAQMNVDAKTLILGDMLELGEQSSEEHQHVVDLLQQNDFKNVLLVGPEFKKTQN
                     SYMCFNNVTELQAYIENHPIANNYILIKGSRGIKLEKIISTL"
BASE COUNT          704 a          390 c          377 g          565 t
ORIGIN      
        1 tggtataagt acaacttact ttaatggaat caaggttggt cttaccacag agcttaaaat
       61 gaaaaataat ttcagtttgc ttaccggaat actctacaat ctggtttatt ctgataaggt
      121 tcagggttat ccaaactcaa aacaagttaa ttacttagcg tacggccatt tcttaaattt
      181 acctgtaatg gggacataca acctcccatt aaccagaaac ctaaaagtat ttgcatttgc
      241 cggaccaaca cttaactacg gcttatcaca aataaacagc ggagtgtcga cggtgggcac
      301 tatcagctct ttctatactg atttatacaa aacctctgta ttaaaccgac ttgacttgca
      361 ggttggcatt ggaggtggaa ttcagtttaa gaaatatcaa ttaaaagccg gttatgatta
      421 tggattgcta aacctaaata gatctaccac caacatgtat cagaaaggtt ggtacgtttc
      481 tttatctgtc aatttgtaac caatcagcaa cgacaagtga atggctaaac tctcacaagg
      541 gtttggtcat tttatattca taatcaattc aattgattta gttctaataa gcaagcatcg
      601 atatcataaa caattgattt taaaatatta acaatacaga atgcaacttt actctatttt
      661 tcttcaacat cccgtaattt gcaccgatag ccgcgtatgt ccggaaggtt cactcttttt
      721 tgctctaaaa ggtgataatt tcaacgcaaa tgcttttgcg ctttcggcac tcgaaaaagg
      781 ctgctctttt gctgttgttg atgaggctga atacgctata gacgaccgtt ttattttggt
      841 ggaaaacgtt cttgaaacac ttcagcaact ggcaaactac catcgtttgc aattgaaaac
      901 aaccattatc ggcattaccg gaacaaacgg aaaaacaact tcgaaagagt tgatagctgc
      961 tgtgttgaaa gaaaaatata atattctttt cacccagggc aatctgaata accatatcgg
     1021 tgtgccactc acgttgcttc aacttaaacc ggaacacgaa ctggctgtaa ttgaaatggg
     1081 tgccaaccat cagggagaaa taaaattact ggcagaaatt gcctcacccg attacgggat
     1141 tattacgaac gtaggaaaag ctcacctcga aggatttggc tcattcgaag gtgtaatgaa
     1201 gacaaaagcc gagttatatg attttattgc cacgtttggt aaaaagattt tcataaacaa
     1261 tgaaaactca aacttactca atatggcagc cggagcggga cttaccaaca aagaaaagaa
     1321 agttggctat acgcagaata taaatgatgc agatgcagaa ataattggca aaataattga
     1381 ttgttcaccc tttctggata tgaactgcca gaaaaaagat ggtacaataa ttgaaataaa
     1441 aacacacctg attggctcat ataatgccga aaatgtattg gctgccgtag ctatcggaag
     1501 ctttttcgga gtaactgacc agcaaattaa agccggactt gaaacctatg taccgcaaaa
     1561 caaccggtcg caactaactg taacggcgca aaacaagctt gtggttgatg cttacaatgc
     1621 caacccaaca agcatgcgtg ccgccatatt gaatttcgca caaatgaatg ttgatgcaaa
     1681 aacactcatt ttgggagata tgctcgagtt gggagaacaa agcagcgaag agcatcaaca
     1741 tgtggttgat ttactgcaac aaaatgattt taaaaacgtt ttgttggttg gccctgagtt
     1801 caaaaaaacg caaaatagct acatgtgctt caacaatgta actgaacttc aggcctacat
     1861 tgaaaatcac ccgattgcaa acaactatat cctgataaaa ggatccagag gcattaagct
     1921 tgaaaaaata atttcaacac tttaatacga aactacataa acgtctaatt tccaattatg
     1981 gatcaaaaaa aaagaaatct gattataatg attgccggag ctttaataat tgcagc
//
LOCUS       DATDNM010000004         2883 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_961722, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000004 DATDNM010000000
VERSION     DATDNM010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_961722"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..574
                     /locus_tag="VI413_00060"
     CDS             <1..574
                     /locus_tag="VI413_00060"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY6913042.1"
                     /translation="IVSGTVHAFDIEPEMIELLREKSRQLQLENIEFHLCDFIAFGSG
                     YGTFAIPAAQIVSGTVHAFDIEPEMIELLRVKSQQLKLENIEFHLCDFIAAGSGLETN
                     SVDYMMLFNILHHSQPTQILSETYRILKPGAKAGIIHWRSDISTPRGPQLDIRPKPED
                     CKRWADESGLKTIKELLLEPYHFGLIIQKL"
     gene            587..907
                     /locus_tag="VI413_00065"
     CDS             587..907
                     /locus_tag="VI413_00065"
                     /inference="COORDINATES: protein motif:HMM:NF014672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE family protein"
                     /protein_id="HEY6913043.1"
                     /translation="MKIGIILETKEYEKAWNAFRFGVTAKKQGHEVKLFLMGEAVECE
                     GLIHEKYNVDEQLKKFVEVGGEILACGTCLKSRQLDSTEACPISTMIDCVNVVVWADK
                     MVTF"
     gene            complement(1022..2053)
                     /locus_tag="VI413_00070"
     CDS             complement(1022..2053)
                     /locus_tag="VI413_00070"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6913044.1"
                     /translation="MISIRYFKGLPEEYESFLIEKYNSYITTCKYNEIYHPDYEIHYV
                     LIYDDSKLTELLMFENSGDTTTCLNKLVYIDQNIFSEFTKFIFESFPVIKKVIIIFSY
                     ISYSLNKSFLFHRNHDYIINLPSTMDDYLSTLGHSTRKNIKNYRSRLSRDYPQANFVT
                     KYGVEIEESNIDRIIQLNIARMKHKGIIPGRDNNDKINIHKFAQHYGVVSYVEIDGVI
                     VAGNIAMILNKQIFGFVIAHDESFSKYDIAKICQLNLIQTCIEKGVSTFHLLWGDNDF
                     KKRFLGEPHLLTSYYVYKTYSLDYMITRAKTFLSHILLIIRQSELTKPLREAIKSYRK
                     NKWKKQEIS"
     gene            complement(2254..2706)
                     /locus_tag="VI413_00075"
     CDS             complement(2254..2706)
                     /locus_tag="VI413_00075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913045.1"
                     /translation="MIKKKTAALFILFAIIIIEAHAIIPHHHLPHNTFIVISSLCHEN
                     KDAHRHPHDYPDCNHDHSSNNNENKNGHCLLKHDVGILTNILRQGSSNYLQTNSHTVF
                     VEFHAIPAGFQFDCIVHVIIVDQQLPPLTSTYPGYTSGGLGLRAPPVI"
BASE COUNT          920 a          453 c          538 g          972 t
ORIGIN      
        1 aattgtgagt ggtacggttc atgcttttga tattgaaccg gaaatgattg aattattgag
       61 ggaaaaatcc cggcagttgc aacttgaaaa tatagaattt catttgtgcg attttatagc
      121 gtttggtagt ggatacggaa ctttcgccat tccggcggca caaattgtga gtggtacagt
      181 tcatgctttt gatattgaac cggaaatgat tgaactgttg cgggtgaaat cgcagcaact
      241 gaaacttgaa aatatcgaat ttcatttgtg cgattttatt gccgctggca gtgggttgga
      301 aactaattcg gtagattaca tgatgctttt caatatactt catcattcgc aaccaacaca
      361 aattctctct gaaacgtatc gaatcctgaa accgggtgca aaagccggaa ttattcattg
      421 gcgaagtgat atttccactc cccgggggcc tcagttggat attcgtccca aaccggaaga
      481 ttgcaaaaga tgggcagatg agtccggatt aaaaacgatt aaagaacttt tgctggagcc
      541 ttatcacttt ggtttaatca ttcaaaaact ttaaataaat acaggtatga aaatcggaat
      601 tattcttgaa acaaaagagt acgaaaaagc gtggaatgct tttcgttttg gagtaacggc
      661 caaaaagcaa gggcatgaag taaaactttt tctaatgggc gaagccgttg aatgtgaagg
      721 tttgatacac gaaaagtaca atgtggatga acaattgaaa aaatttgtgg aagttggcgg
      781 tgagatactt gcttgcggaa cctgcttgaa atcacgccag ttggatagca ctgaagcttg
      841 tccgatttct actatgattg attgcgtcaa cgtagtggtt tgggcagata aaatggtgac
      901 attctgattc taattatagt cttaaaaaga gaaatagcac cttgtttctt atttcgttga
      961 aacaaggtgt tgttttttta tattttggcg gaaaatagtt caatgtatat atttccctct
     1021 cttagcttat ttcctgtttt ttccacttat tttttcggta agattttatg gcttctctta
     1081 atggtttcgt aagctcagac tgcctgataa ttaataaaat atgtgataaa aaagttttag
     1141 ctctcgtaat catgtaatcc aaagaatacg ttttgtaaac ataataggaa gtcaacaaat
     1201 gaggttcccc caagaatctt tttttaaaat cattatcacc ccataaaagg tggaatgtcg
     1261 acactccttt ctcaatacaa gtttgaatta aatttagctg gcatattttt gctatatcat
     1321 atttggaaaa actttcatca tgtgcaatta caaaaccgaa aatttgctta tttaatatca
     1381 ttgcaatgtt tcctgccaca attactccat caatttcgac gtagctaacc actccgtaat
     1441 gctgagcgaa tttgtgaatg ttgattttgt cgttattatc tcttcccgga attattccct
     1501 tgtgtttcat tctggcaata ttcaattgaa taatcctgtc aatattgctt tcttcaattt
     1561 caactccgta cttagtcaca aagttggcct gaggatagtc tctcgacaat cttgatctgt
     1621 agtttttaat attttttcgc gtgctatgtc caagtgttga taaataatca tccatcgtag
     1681 aaggtaagtt gataatataa tcatgattcc tgtggaataa aaatgattta ttcaaactat
     1741 aactaatata agagaatatg attattactt ttttaatgac agggaaactt tcaaatatga
     1801 actttgtaaa ctccgaaaag atattctgat caatataaac aagcttgttc agacaggttg
     1861 ttgtgtcacc gctgttttca aacattaata attcggttaa tttgctgtca tcatatataa
     1921 gtacataatg tatttcataa tcagggtgat atatctcgtt atatttacaa gtagtgatat
     1981 atgaattata tttctctatc agaaaagatt catattcttc aggcaatcct ttaaaatatc
     2041 taattgaaat catatttttt atttttacaa ggaaattgaa aaatgaaact tttacaataa
     2101 ttggagcaat attgcaactt tttacagctc ataaaatagt acaaagctat tccaaaatct
     2161 taggggaata aaacgttaat atgtggttcg gacaacatac aattgtgttg caataagttt
     2221 acatattgca acacagttgt tttacaagga tgattaaatg acaggaggtg cgcgtagacc
     2281 taaccccccg gaagtgtaac cgggataagt ggaagttaac ggaggtagct gttgatcgac
     2341 tataattaca tgaacaatgc aatcaaattg aaaaccagct ggaatagcat ggaattctac
     2401 aaagacagtg tgagaattgg tttgcagata attgctactt ccttgtctga gtatattcgt
     2461 aagaattcca acatcatgtt ttaataaaca atgaccgttt ttgttttcat tattattgct
     2521 gctgtgatca tggttacaat ccggataatc atgcggatga cgatgagcgt ctttattctc
     2581 atgacagagc gaactaatga caataaaagt attatgaggc agatgatggt gaggtataat
     2641 agcgtgagcc tctataataa taatggcaaa cagtataaaa agtgcagctg tttttttctt
     2701 tatcatttta aatggctttt gaaaaaataa cgctgaaagt ttgattttgt ttattcaagg
     2761 ttctttttac ctgcaacttc ttatgccaat tgtatattcc ccttatgttg aaaacaaacg
     2821 ggagaatgaa atattaattc tgtggagaat agaattctac ttttccacat ttcgggcata
     2881 tat
//
LOCUS       DATDNM010000005        13684 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_854977, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000005 DATDNM010000000
VERSION     DATDNM010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 13684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13684
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_854977"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            110..3715
                     /locus_tag="VI413_00080"
     CDS             110..3715
                     /locus_tag="VI413_00080"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6913046.1"
                     /translation="MKTKKNNRILIILLLISIVAGLVCNYFYEVSPKHAIRTGEFQQQ
                     LKTKEDKAAKTLDDMKEIIVHSSKDSLINYPFENNDISYYVFENNELIFWSDNNLDIS
                     NISLPDSTDWHYVQLHNAHCVSRLQTFDSYKFLALIKIKNNYPYENDELKNDFASGFN
                     IDKEVMIANGKSTDKHAIFCSHGSYIFTLSEPQVPIYNETWSQLGLVAYSLAFLLFFI
                     LFARSPYLFHRKTIPLKTFMYIFGSVGLLTGLCLFFNFPSVLFQNKLFSPFQYASNPF
                     LASISHLTIATGFIISCIYLFYTHTNTDSIKNTRKHWIFLLVFCLYFVLVYYVFSGLI
                     YHSSIQLSILRFNDFSFISIWIHFLILLWGIGLALLFFKTHNWFNAKHKLKQAIQIDL
                     LLSIALFCISFLFFREDTLRISVSFAMLCAVFYLPFRIKKHKNIYTYVACWTLLFTGF
                     VVINSSIINNNKKSDKYKILAQNISINGNTDNDRMADILLEELDVQIRKDKRIAKLVS
                     KTDSLSTANNYLNANYLRGFWNKYEMRLNATTIHSPLYNEYAQYISNVGTQLKNTHFY
                     SVTANENNMSYIGEFQVKPAGKDTIAFFMEFYPQRKFKSYSFPNLLIASAPDIQSKLN
                     IGIAKYEHQRLVYSSGKFDYSIENNWIPKGKSDFYSTIYKGRIHYIYAPNPNVYIVIT
                     EQQPYDPIAYLLYFVYTFMAFFAISWLFIWIYQLTHRKRNYRLGLTAKFQYTFIGLLI
                     ISFLGIFYVSVNFIQQKYQEEQIANLENKKKYVQKALQDMYYWNQDLIALNTQALNFD
                     LQDLSYIYHTDIHVYDNRGVLIGSSQPLIFNKNLISNRISPIPMFKPNANLNQYEHIG
                     KLNYLTGYTDFYNGDYLQIGYIAIPQFFSQDEIQSEIESFITVIIHIYLIIIVLAILL
                     SLFIGKQLSAPLNVLENKLKEMRLGRRNEKIDYNLNDEIGQLVIQYNRTVDELEQSAK
                     LLAKSERESAWKSMARQVAHEINNPLTPMKLSIQQLQRTKKMNDERFDDYFEKSTSML
                     IEQIDNLSRIAGTFSNFARMPEAKFEQVDVAARLYSVVQLFVNNNEQIQIEYRGQEKD
                     VFVYADPEQLVQVFNNLLKNATQAIPDERVGVIEVNLWQEAQRIMIEITDNGIGIENE
                     LHDKLFVPNFTTKSNGMGLGLAISKNIIELSGGTISFTSNVNQGTTFRVILPKAE"
     gene            3949..5700
                     /locus_tag="VI413_00085"
     CDS             3949..5700
                     /locus_tag="VI413_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6913047.1"
                     /translation="MANKHKNSKKGGRPKGPNIFGVLKPYKLMIGGLIVFALLSNAVN
                     LVIPKIISHSIDDFSKGSFSFQKIIIEFMAAALIIFVFTFLQGILQTYASERVARDLR
                     TRLTDKISRQSFAFIQDSNPSKLLTNLTGDVDSIKLFVSMAVVSLASSLFIIIGASAL
                     LLSINWKLALNVLVIIPVIIGAFGVVFGKLGVLFRKSREMVDRLNKIINESIMGATLV
                     RVLNSQITEYNKFMEANTTARNLSLSILKLFATLIPIVVFVANMASLAILALGGHFVI
                     SGSMSLGDFAAFSSYLVILIFPIMVIGFISNFIAQASVAYGRICEVLNAPETRDTGTV
                     NTPLTGKIEMKNILVSYGEKPALKDVSLTIQPGTRTAIIGPTAAGKSQLLFLLTSLIK
                     PQSGSIQFDGIDINEYDKETFQHQIGFVFQDSVIFNISLRENIAFNELVTDELMDKAI
                     ETAELKDFIDTLPNGLETIVSERGTSLSGGQKQRIMLARALALNPKILLLDDFTARVD
                     SQTEQKILENVERNYPGLTLLSVTQKIASVQHYKQIILLEEGEILASGTHEELLQSSP
                     EYVQIFNSQRSTNHYEL"
     gene            5690..7465
                     /locus_tag="VI413_00090"
     CDS             5690..7465
                     /locus_tag="VI413_00090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6913048.1"
                     /translation="MSYNLNKRGKGGAFQPIEKVSTKVILQRLMTLVGRERKNLYIAM
                     VFIFINSGLNLIAPYLMGHAVDKFVVTHQYPGLIKYSIILFGVFCLAMVSGYTQAQLM
                     GRVGQRMLYNLRNSVFNKLQELPIDFFTQNKAGDLISRVNNDTDKINQFFSQSLVQFM
                     SSIFTMIGAGVFLISINAKLALAALAPALVLWVFTRSVSPWVKNRNATNMKSTGSLSA
                     EIQESLNNFKVIVAFNRRDYFRKKFDEANTENYRSAIKAGIANNIFTPVYGFSSNIGQ
                     LVVLALGIYLITIGQFSVGLLISFLAYIAQFYNPLRQIAALWTSFQVALAGWDRISQI
                     LVQENNLQVIPGSVKEENPFLLSFRNVSFSYLPEKEILTNVSFDLERGKTYAFVGPTG
                     GGKTTTASLMSRLYDPNAGQILLNGVDIRSLDANTRTAKIGFILQEPFLFTGTIRDNI
                     LYGNACFINLTDEELLQELKLVGLDGLLDRFDGGLAAEIKGTGEGISLGQKQLIAFIR
                     AVLRRPDLLILDEATANIDTVTEQLLDDILHKLPDSTTRIIIAHRLNTIENADEIYFV
                     NSGAVTKAGSMEDAVNLLLHGKRES"
     gene            7529..7906
                     /locus_tag="VI413_00095"
     CDS             7529..7906
                     /locus_tag="VI413_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HEY6913049.1"
                     /translation="MKKILTIAAISGMLSVILGAFGAHGLKKIISPEMLEVFKTGVQY
                     QFYHTFALLVVGILMYFSESKALKWSANLFITGIVLFSGSLYVLAISGIKVLGAITPL
                     GGIAFIAGWLLLAIHASKHSPSK"
     gene            complement(8444..9637)
                     /gene="fabV"
                     /locus_tag="VI413_00100"
     CDS             complement(8444..9637)
                     /gene="fabV"
                     /locus_tag="VI413_00100"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF010177.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004318 - enoyl-[acyl-carrier-protein]
                     reductase (NADH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabV"
                     /protein_id="HEY6913050.1"
                     /translation="MIVKSRMRGFISLTAHPAGCEQNILNQIEYVKSKGKIEGPKKVL
                     VIGASTGFGLASRISSAFGSDAATIGVFFEKAPQPEKTASPGWYNSAAFSKAAHAAGL
                     YAKSINGDAFSNEVKEKAIELIKADLGKVDMIVYSLASPVRTHPVTGVTHRSVLKPIG
                     QAYSNKTVDFHSGTVSHVTIEACSDEEEIENTVAVMGGEDWEMWMDALQKADVLADNV
                     ITLAYSYIGPSVTEPIYRKGTIGRAKDHLEATAVSITEKLKNIGGKAYVSVNKALVTQ
                     ASSAIPIIPLYITVLFKVMKAKGIHEGCIEQIQRLYADKLFNGGEVPTDEAGRIRIDD
                     WEMRDDVQKEIFAIWDELSTETVHHLGDLRGYAKEFKNLFGFGFKQIDYHLDVNEMVE
                     IEGLV"
     gene            9900..10265
                     /locus_tag="VI413_00105"
     CDS             9900..10265
                     /locus_tag="VI413_00105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913051.1"
                     /translation="MRNKPDLKHAMFIFGIIALIIGAIDPLEGSVVIVIGIISLSWAA
                     YLNHDRHWRIFITTCLMIIWGVIFLFYLSALGGFGDNSSLSWWWGILILPYPIGWLIT
                     MTVLIIRAIKTIKKIKQNA"
     gene            complement(10359..12278)
                     /locus_tag="VI413_00110"
     CDS             complement(10359..12278)
                     /locus_tag="VI413_00110"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 16 glycosylhydrolase"
                     /protein_id="HEY6913052.1"
                     /translation="MNRLIHIIFLQILSILFVSAQDYKLMWEDNFDKPALDEKQWTIE
                     VQGGNNQELQYYRRENISIEKDASGVNCLVISAKRENYGTRLVTSGRLVTRGKVFCKY
                     GKIEARIKFPNTANGFWPAFWMLGEDFPTVGSPRCGEMDIVEMGSSTGIKRGLQDRYH
                     TAACHWGETLTSYATNNTAAYSLEDDFHLFTLIWDETYIKMYLDLDKYPLHSPYLQMK
                     IDTVDALGTPAHYFKKNYGILLNLAVGGTFTGITGNANIDSITALPKDGTPAKMYVDY
                     VRIYQKNVSGEVYSGPGFTPETTVPSLISATKGAITYNSVELLLKGLDNSGTVYYDIT
                     YNGNKVTTNATSGTQLSTTLTGLASGTTYNFSVVAKDASGNVSGSPIIVSATTAPPFN
                     TAKKIDYDNYGYDWANTLFANADCSPTLYSVVDNPDDNGLNYSSHCAKYIVKSTASDW
                     AGVWTSNIGQFTFTSENCKVRLMVNKDVISNFDLKFENSDGSVSVERKVSNTLVNQWE
                     ELTFDFSQYIGKTVNRIVIIPDFTTARKVGSVNYWDEISFTNKVVTDNDTEKQIADNV
                     EIYPNPVRNQLHVKADQEIKQVVITTLVGRILKTEAVSNSETDIDLSQIVPGNYMVTV
                     ELANGKTSTQKIVKQ"
     gene            13372..>13684
                     /locus_tag="VI413_00115"
     CDS             13372..>13684
                     /locus_tag="VI413_00115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913053.1"
                     /translation="MRTSMKLILGVLLTALSLQGFAQKPEPVYSVVRQIHDFDWYEQQ
                     AKAWKQEIDRGTTDKMAWVYWFMANRMACRFCDQKKWESKVGDYFIPQTKLIEMAENA
                     IP"
BASE COUNT         4225 a         2792 c         2528 g         4139 t
ORIGIN      
        1 gcgagccata tcatcatgaa taaggtttag cttttgagaa aaaaaaataa agccaattga
       61 aattatatca attcgctgaa ttcgtattta attcgtgcaa ttcgccttta tgaaaacaaa
      121 gaaaaataac cgcatattaa ttattctgct actaataagc attgtagcgg gtttagtgtg
      181 caattatttt tacgaagtat ctcccaaaca tgctatccgc accggtgagt ttcagcaaca
      241 actgaaaaca aaagaagata aggctgcaaa aacactggat gacatgaaag aaatcattgt
      301 tcattcatca aaagattcgc tgatcaatta tccgtttgaa aataacgata tttcatatta
      361 tgtttttgaa aataacgagc tgattttctg gtcggacaac aacctggaca tcagcaacat
      421 ttctctcccc gactccaccg actggcatta tgtacagctc cacaatgccc actgtgtaag
      481 tcggttacaa acatttgatt cttataaatt tctagcatta atcaagataa aaaacaatta
      541 tccgtatgaa aatgacgagt tgaaaaatga ctttgccagc ggctttaata ttgataaaga
      601 agtaatgatt gccaatggca aaagcactga taaacatgcc attttttgct ctcatggcag
      661 ttatatattc acgttatccg aaccgcaagt acctatttac aacgaaacat ggtcgcaact
      721 tggacttgtg gcatattcgc tggcattcct tctgtttttt atactttttg cccgctctcc
      781 ctacctcttt caccgaaaaa caattccact caaaacattc atgtatattt tcggaagtgt
      841 aggattatta accggtttat gcttattctt taattttcca tcagtactgt tccagaacaa
      901 actattttca ccgtttcaat atgcttccaa tccttttctg gcatccatca gccacctgac
      961 cattgcaacc ggttttatca tttcctgcat ttatctgttt tatacacaca ctaataccga
     1021 ttcgataaaa aacacccgaa aacattggat attcttattg gttttttgcc tctattttgt
     1081 attggtctat tatgttttca gtgggctgat ttaccactcc agcattcaat taagcatact
     1141 ccggtttaat gacttttcat tcatcagcat ttggatacat ttcctgattc tgttgtgggg
     1201 aattggcctg gctttgttat ttttcaaaac ccacaactgg ttcaatgcca agcataaact
     1261 caaacaagca atacaaattg atttattact ttcaatcgcc ttattttgta ttagttttct
     1321 gttttttcgc gaagacacat tgagaataag tgtttccttt gcaatgcttt gcgcggtgtt
     1381 ctatttgcca ttccggataa aaaaacataa aaacatttat acgtatgtgg cctgttggac
     1441 cttgcttttc accggatttg ttgtaataaa ctcttctatc attaataaca ataagaaaag
     1501 tgacaaatac aaaattcttg ctcaaaatat atcgatcaac ggcaacacag acaacgaccg
     1561 tatggctgat attttgttgg aagaactgga tgtacaaatc cgaaaagata aacgtatagc
     1621 caaattagtt tcgaaaaccg actctctgtc gactgcaaac aattatctga atgctaatta
     1681 cttgcgtggc ttttggaaca aatatgaaat gcggttgaat gcaacaacca ttcactcccc
     1741 actttacaat gaatatgcac aatatatatc gaatgttggt acgcaactta aaaacacaca
     1801 cttttacagt gttacggcca acgaaaacaa catgtcgtat attggtgaat ttcaggtaaa
     1861 acctgctggc aaggatacga ttgcattttt catggagttt tatcctcaac gcaagttcaa
     1921 gagttatagt ttcccgaacc tgctcattgc ctctgcaccc gacatacaat cgaaactgaa
     1981 cattggaata gccaaatacg aacatcaacg attggtttat tcttcgggaa aatttgatta
     2041 ttcaattgag aacaattgga ttccgaaagg aaagtcagac ttttacagca ctatttataa
     2101 agggagaatt cattatatat atgccccgaa tcccaacgtt tatattgtca ttaccgagca
     2161 acaaccatac gatccgatag cttacctgct ttatttcgtg tacactttta tggcattttt
     2221 tgccattagc tggctattta tctggattta ccagcttacc caccgaaaac gcaactacag
     2281 gcttgggctt acagcaaaat ttcaatatac atttatcgga ctgttgataa tcagctttct
     2341 gggaatattc tacgtttctg ttaattttat tcaacaaaaa taccaggaag aacaaatcgc
     2401 taacctggaa aacaaaaaaa aatacgtcca aaaggcattg caggatatgt attattggaa
     2461 tcaggacctg atcgcactga acacccaggc actgaatttc gatttgcagg atttgtcata
     2521 catttaccat acggatattc atgtatatga taatcgcggt gttttaatcg gaagttccca
     2581 accgcttatt ttcaataaaa acttgataag caatcggata tcaccgattc caatgttcaa
     2641 gccaaacgcc aacctgaacc agtatgaaca tatcgggaaa ttaaactacc taaccggcta
     2701 caccgatttt tacaacggcg attacctgca aattggctac attgccatcc cgcagttttt
     2761 cagtcaggat gaaatccaaa gtgaaatcga aagctttata accgttatta tccatattta
     2821 tctgataatt atcgtattgg ctattttgtt gagtttattt atcgggaagc aactttcggc
     2881 cccacttaat gtactggaaa acaagctcaa ggaaatgcgc ctcggacgta gaaacgaaaa
     2941 aatcgactat aatctgaacg atgaaatagg acaactggta atccagtata accgtacggt
     3001 tgatgaactg gaacaaagtg caaagttact ggctaaatcg gaacgtgaat cggcctggaa
     3061 atcgatggcc cgccaggtgg cccacgagat aaataatccg ttgactccta tgaaattaag
     3121 catccaacag ttgcaacgta ccaaaaagat gaacgatgag cggtttgatg attattttga
     3181 aaaatcgacc agcatgttga ttgagcaaat tgataattta tcgcggattg ccggcacttt
     3241 ctcaaacttt gcgcgtatgc ccgaagccaa gttcgaacag gttgacgttg cagcccgttt
     3301 atattctgta gtacaactat ttgtaaacaa taacgaacaa atacagattg aatacagagg
     3361 ccaggaaaaa gatgttttcg tgtatgcaga ccccgaacaa ttggtccagg ttttcaacaa
     3421 cctgctgaag aatgccactc aggctattcc ggatgaacgt gttggagtta ttgaagttaa
     3481 tctatggcag gaagcccaac ggattatgat agaaattacg gacaatggca tcggcattga
     3541 aaatgaactg cacgacaaac tctttgtacc taatttcacc acaaaaagca acggaatggg
     3601 actcggctta gccatttcaa aaaatataat tgaactttcc ggcggaacca tttcatttac
     3661 atccaatgta aaccagggaa ccactttcag ggtaattctg cctaaagccg aataataact
     3721 tccctggaac tgctgttcat tctgttttat caattcacaa cctttcacaa cataacacgt
     3781 aattttaatg cttatctatg atttaacagc attgaaattc gtaactttgc aggctttttc
     3841 aaataaaatc agaacactca ctcaacttct ttgtgttaat ttgcgtttca acgttcgtaa
     3901 ttcatgaact tgctcctccg ggcatgttaa taacagttat tttcataaat ggccaacaaa
     3961 cataaaaaca gtaaaaaagg cggaagaccg aaaggaccga acatcttcgg ggtattaaaa
     4021 ccctacaaac tcatgattgg cggattgatt gttttcgcgt tactcagcaa cgcggtaaac
     4081 ctggtgatac caaaaatcat atcgcacagt atcgatgatt tctcgaaagg ctcattctct
     4141 ttccagaaaa taatcattga attcatggcg gctgccctga ttatttttgt atttactttt
     4201 ctgcagggaa tactccaaac ttacgcttcg gaacgtgtgg cacgggattt acgcaccagg
     4261 ctgactgaca aaatatcgcg ccagagtttt gcattcattc aggattcaaa cccatcgaaa
     4321 ctgctgacaa acctaaccgg cgatgttgac tccataaaat tgtttgtatc catggcggtg
     4381 gtttcactgg catcatcact gtttatcatt attggtgcca gcgctttgct tctttccatc
     4441 aactggaaac tggccttgaa tgtattggtg attatccctg tcattatagg agcttttgga
     4501 gttgtgttcg ggaaattggg cgttttattc agaaaaagcc gtgagatggt tgaccgactc
     4561 aacaaaatta tcaacgagag cattatggga gccacattgg ttcgtgtgct aaattcacag
     4621 ataaccgaat acaacaaatt catggaggct aacacaacag cccgaaacct gagtttatcc
     4681 atcctaaaac tttttgccac gcttattcct attgttgtct ttgtagcgaa tatggcttca
     4741 ctcgccatcc tggctttagg cggacatttc gttatttcag gctctatgtc gttgggtgat
     4801 tttgctgcgt tcagttccta tctggtcatt cttattttcc cgattatggt tattggcttt
     4861 atcagcaact ttatcgctca ggcttcagtg gcttacggcc gtatctgcga agtgctgaac
     4921 gcacccgaaa cccgcgacac aggaacggta aacaccccgt taacaggaaa aatcgaaatg
     4981 aaaaacatac tggtaagcta cggcgaaaaa ccggcattaa aagacgtatc gcttaccata
     5041 caaccgggga cacgaactgc cattattggc ccaacggctg ccggaaaatc gcagttattg
     5101 ttcttgctta ccagcctgat taagcctcaa agtggctcta tacagtttga tggaatagac
     5161 attaatgaat atgacaaaga aacttttcag catcaaatcg gcttcgtatt tcaggacagt
     5221 gtgatattca acatcagtct ccgcgaaaac attgccttca acgaactggt aacagatgaa
     5281 ttaatggaca aagccattga aacagccgaa ctgaaagact ttatagatac attgcccaat
     5341 ggccttgaaa caattgtaag tgaacgtgga acaagtcttt ctggcggaca aaaacagcgc
     5401 attatgctgg cacgcgcatt ggcactgaat ccgaaaattc tgttgcttga cgattttacg
     5461 gctcgtgtag atagccagac agagcaaaaa attctggaga atgttgaaag aaattatccg
     5521 gggctgacat tgctttccgt aacgcagaaa atagcttcgg tgcaacatta caaacaaatt
     5581 atcctgttgg aagaaggtga aattctggcc agcggaacac acgaagaatt gcttcaaagc
     5641 agccctgagt atgttcagat tttcaattca caacgcagta caaatcatta tgagctataa
     5701 tctcaacaaa agaggaaaag gcggggcatt tcaacccatc gaaaaagtaa gcacaaaagt
     5761 cattctgcaa cggttaatga cgttggttgg tcgtgagcgt aaaaacctgt atatcgccat
     5821 ggtttttatc ttcatcaatt caggcctgaa ccttattgca ccatacctga tggggcacgc
     5881 tgttgataaa ttcgtggtta cacatcaata tccgggcctg ataaaatact caatcattct
     5941 atttggtgtg ttttgtttag ccatggtaag tggttataca caagcacaac tgatgggccg
     6001 ggttggacaa cgtatgctat acaatcttcg taacagcgtt ttcaataaac tgcaggaatt
     6061 gcctatcgat ttctttacac aaaacaaagc cggtgatctg atttcgcgtg tcaacaacga
     6121 cacagacaaa atcaaccagt tcttctcgca atcgctggtg caatttatga gcagtatttt
     6181 caccatgata ggagccggag tttttctgat ttccatcaac gcaaagctgg cgttggccgc
     6241 ccttgctcct gcccttgtac tctgggtttt cacacgcagt gtatcgccat gggtaaaaaa
     6301 ccgcaacgct accaacatga aaagtacagg aagcctgagt gcagaaatcc aggaaagcct
     6361 gaacaatttc aaggtgattg tggcttttaa ccgcagggat tatttccgca aaaaattcga
     6421 cgaagctaat accgaaaatt accgaagcgc cattaaagca ggtattgcca acaacatatt
     6481 tacgccagtt tatggctttt cgtctaatat cggacaactg gttgtgctgg ctttgggaat
     6541 ttacctgatc accatcggac aattttctgt cggtttgctg attagctttt tagcatatat
     6601 agcacagttt tacaacccgt tgcgacaaat tgctgctttg tggaccagtt ttcaggtggc
     6661 actggccggc tgggatcgca tttcacaaat tcttgtacag gaaaataacc tgcaggttat
     6721 tccaggcagc gtaaaagaag aaaatccatt tttgttatcc ttccgtaatg tatcattttc
     6781 atatttacct gaaaaagaaa tccttaccaa tgtcagtttt gatttggagc gggggaaaac
     6841 ctatgcattt gtcggaccaa caggtggcgg gaaaaccact actgcttcgc taatgtcgcg
     6901 actatacgat ccaaatgccg gacaaatcct gttgaacgga gttgacattc gctcgttgga
     6961 tgcaaacaca cgaacagcta aaatcggctt cattctgcaa gaaccatttt tgtttaccgg
     7021 aacaatccgc gacaatattt tatatggcaa tgcttgcttt atcaatctta ccgacgaaga
     7081 gttgttgcag gagctgaaac tggttgggtt ggacggattg ctggatcgtt ttgatggcgg
     7141 actggcagct gaaataaaag gcaccggcga gggaatcagt cttggtcaaa agcaacttat
     7201 agcctttata cgtgcggtac ttcgccgtcc ggatttatta attctagacg aggcaacggc
     7261 caatatcgac acagtaactg aacaactgct cgatgacatc ctacacaaat tgccggacag
     7321 cacaacacga atcattattg cacatcgcct caataccatt gaaaatgctg acgaaatata
     7381 ctttgtcaac tcaggcgctg taacaaaagc aggctccatg gaagatgcag taaacctatt
     7441 attacacggg aaaagagaaa gctagatggc ccctaacccc taaaggggaa ctaataatcc
     7501 cctttggggt cggaggtaaa tatataatat gaagaaaatc cttacaatag ccgccatcag
     7561 tggtatgtta tccgttattt tgggagcctt tggtgctcac gggctaaaga aaataataag
     7621 cccggaaatg cttgaagtct ttaaaacagg tgttcaatat cagttttatc acacatttgc
     7681 tttattagtt gtaggaattc tgatgtattt cagcgaatct aaagccctga aatggtcagc
     7741 aaatcttttt atcactggca ttgttctttt ctccggttca ttgtatgtac tggcaatctc
     7801 gggaataaaa gtgctgggtg ctattacacc attaggcgga atagcattta ttgcgggctg
     7861 gttgttgcta gcgattcatg cgagtaaaca ctctccttca aaataacaaa ttcaaaagat
     7921 acagagcaaa agttgtcgga attcggcaac ctttttttta atgggcttac cattaccctg
     7981 gtagactgta taccattacc gtggtaaggg gtctatgctt accgtggtaa acactctgcg
     8041 cttactgttg aagtctggct acgataattt aagtaatcag cttaaaatcc ttcaaaaaca
     8101 gtgcgaaaaa tactggtctc tatcaaggtg tcttcattac tcactgaagg cacactgatg
     8161 ggggcgattg cgtacctctg atgcgagcgt tgaaacaggt ctgatgaaaa ctcttgttaa
     8221 gataagctga tagttcgtgt gtgacactat cgggttatag tgcttggcac taaagcgtta
     8281 tagtgggtat cactacaacg ttatagtgga ggtcactaag tatttcagac ttagctggca
     8341 aaacctaaac ctgcctgcac gggagatgct cataatcagt cataataaaa ggcggaaaca
     8401 gttaagtttc cacctttcat tttcagtttt caaaactcat aacttacaca agcccttcaa
     8461 tttctaccat ttcgtttaca tcaagatggt agtcaatctg tttgaatcca aaaccaaaca
     8521 ggtttttaaa ttccttggca taccctctca ggtcacctag gtgatgcaca gtttctgtag
     8581 acaactcatc ccagatggcg aaaatttctt tctgaacatc atcgcgcatt tcccaatcat
     8641 cgatacgtat acgaccagcc tcatcagttg gaacttcgcc tccgttgaat agtttatcag
     8701 catagagcct ttgaatttgt tcaatacaac cttcgtggat tcctttcgct ttcattacct
     8761 tgaaaaggac cgtaatgtaa agcggaataa tcgggatagc cgagctggcc tgggtaacga
     8821 gcgctttatt aaccgacaca taggcttttc caccgatatt tttcagcttc tctgtaatcg
     8881 atacagctgt agcttccaaa tgatcttttg cacgtccgat agttcctttg cggtagattg
     8941 gttcggtaac cgacggaccg atataggaat atgccagcgt aatcacattg tcggccagca
     9001 catcagcttt ttgcaatgca tccatccaca tttcccaatc ttcgccaccc ataacggcta
     9061 cagtattttc aatttcttct tcatcgctac atgcctcaat ggttacatgg gaaactgtac
     9121 ccgagtgaaa atcaactgtt ttattgctgt aagcctgtcc gataggtttg agtaccgaac
     9181 gatgagttac gcccgtaacc ggatgtgtac gaaccggcga agccaggctg taaacaatca
     9241 tatccacctt gccaagatcg gctttaatca actcaatggc tttctcctta acctcattcg
     9301 agaaagcgtc gccattaata cttttggcat acaaaccggc agcatgggca gctttactga
     9361 aagcagccga gttataccaa cctggtgaag cagttttttc gggttgtggg gctttttcaa
     9421 agaaaacacc gatagtagct gcatccgaac caaaagcact ggaaatacgg gatgccagcc
     9481 caaatccggt agatgccccg ataacgagta cttttttagg tccttctatt ttgcctttcg
     9541 attttacata ttcaatctga ttcaggatat tctgttcaca tcctgcgggg tgtgcagtaa
     9601 ggctgataaa gccacgcatt cttgatttta caatcatttc taagttttat taattaatag
     9661 atttttcaga tatacggggt gtaggttcca cctttttgat ttcggggtgc aaaagtacaa
     9721 cttttttaaa caaccaaaaa caaaaaaatg tttagaaaca attattagta caaccgaaca
     9781 ataattaaaa tgcacattct taatgactaa aaaccgattc tgttgttata tttataacta
     9841 accctgttag tccattagac attaaactat tataaaattc attttaacca taagctatca
     9901 tgagaaataa accggattta aaacatgcca tgttcatttt tggcatcata gcattaatta
     9961 ttggtgcaat tgacccgctt gaggggtcgg ttgtaattgt tatcgggata atttcactgt
    10021 catgggctgc ttatttaaac cacgacaggc attggagaat atttatcaca acatgcttaa
    10081 tgattatctg gggtgtaatc tttctgtttt atctgtcagc gcttggagga tttggggata
    10141 attcatccct ttcgtggtgg tggggaatac ttatattgcc ttaccccatc ggttggctga
    10201 ttacgatgac ggtactgatt atccgtgcga taaagacaat aaaaaagata aaacaaaatg
    10261 cttaagatgc taaccagccc tgaaagactg taatagtatt cagggctgga tagcatatta
    10321 ttttgtgagc ctctggttgt tgcctgagtt taattaattt attgttttac aattttttgt
    10381 gtcgaagttt taccattagc aagttctaca gtcaccatgt agtttccagg aacaatctga
    10441 ctcaaatcaa tatctgtttc actgttgcta acagcctctg ttttcaaaat ccgtccgact
    10501 aaagtagtga taactacctg cttgatttcc tgatcagctt ttacatgtaa ctgattgcga
    10561 accggatttg gatatatttc tacattatcc gcaatttgct tttcggtatc attatctgta
    10621 acaaccttat tggtaaatga tatttcatcc caataattca cacttccaac tttccttgcc
    10681 gtagtgaaat ccggaataat cacaattcta tttactgttt taccaatata ctggctaaag
    10741 tcaaaagtaa gctcctccca ttgattgacg agtgtatttg aaactttcct ctccacagaa
    10801 accgatccat cactattctc aaatttcaaa tcgaaattac ttattacatc tttgttaacc
    10861 attaatctaa ccttacaatt ttcggatgta aatgtaaact gtccaatgtt gctagtccac
    10921 acaccggccc aatccgaagc tgttgatttt acaatgtact tagcacaatg gctggaataa
    10981 tttaagccat tatcatccgg attgtctaca acagaatata aggttggaga acaatctgca
    11041 tttgcaaaca gagtatttgc ccaatcatat ccgtaattgt cataatcaat tttcttcgcc
    11101 gtattaaaag gcggtgctgt ggtagccgaa acgataatag gagagccgga aacattcccg
    11161 cttgcatctt tagctacaac tgaaaaatta taagtagtac cagaagctaa tccggtaaga
    11221 gtagtggaaa gttgtgttcc tgaggtagcg ttcgttgtaa ctttatttcc attataagtt
    11281 atatcataat atactgtacc tgaattgtca agtcctttaa gcaataattc cacactattg
    11341 tatgtaatag caccttttgt agctgatatc aggcttggta ctgttgtttc tggagtaaag
    11401 cctggtcctg aataaacttc acctgaaaca tttttttgat atatacgaac atagtcaaca
    11461 tacatcttgg caggagtacc atctttgggt aaagcagtaa tgctatcgat attggcattg
    11521 ccggttattc cggtgaatgt acctcctaca gccagattca gcaaaatacc atagttcttt
    11581 ttaaaataat gagccggagt accaagtgca tcaactgtat caattttcat ttgaagatac
    11641 ggagaatgta atgggtattt gtccaaatcc aaatacattt taatgtatgt ctcatcccaa
    11701 atcaacgtaa agagatgaaa atcatcctcc aagctataag cagccgtatt attggtagca
    11761 tacgatgtca aagtttcgcc ccagtggcaa gcagctgtat ggtaacgatc ctgcaaacct
    11821 ctttttatcc cggtactgct tcccatttct acaatatcca tttctccaca tcggggagaa
    11881 cctactgtcg gaaaatcttc gcctaacatc caaaaagccg gccaaaaacc attcgcagta
    11941 tttggaaatt ttatgcgcgc ttcaattttt ccgtatttgc aaaatacttt acctcgtgtt
    12001 accaatcgcc ctgatgttac caatcgggtt ccgtaatttt ctctttttgc acttattact
    12061 aaacagttga ctccacttgc gtccttttca atagatatat tttcgcgacg ataatactgt
    12121 aactcctgat tattaccacc ctgtacttca attgtccatt gtttttcgtc cagcgcaggc
    12181 ttatcgaagt tatcctccca cattaatttg taatcttgtg cagatacaaa taatatggag
    12241 agaatttgta aaaatattat atggattaat ctattcatga tattttttaa tcttaattta
    12301 cccatagaag aattaagaca atttttcaga atttaaataa ttataattat tacaattttt
    12361 aagctatcag aaaaaaatac tgccgtaggc agctcttact ttatcgataa aaatctgaaa
    12421 tctggaattt aggatatttg ttttcaaaga tttatgctat gaaaaaccgg gtatgttctt
    12481 ttttcattat gatctttcca aaagaaaaaa gcagataaag aatataactg gggatttttt
    12541 acagcacttt atttactttt ctttgattac ctgacaaatt gttttaagca aataaaatct
    12601 tgattttgcg aacaaatatc tctactgtaa aaatatgaat agcaaagtaa attggtcttt
    12661 atttacattt gtagtgatta cagcacacgc tgtggtaatt attacatcga ggagtaaatt
    12721 ggtgagattc tctaattaaa attccaatac tggcaggaca aaacacttaa tacattaata
    12781 agcagacaga tatatacaac actaacttat cttaatataa ttatgtatag aaaagtaaaa
    12841 ttatatgaat gtatatgcaa tttctgaata attcaatgta gcattttata ttacattaac
    12901 acaatgcaaa atactactta aaaatgcttg catttcacac atctcaaatt ttaagctaac
    12961 accagccttt atttttaata tacattaatt taaatagccg attaatcaac gaaaattagc
    13021 attaattaaa cataaaagag ataaggagtc tacaaaaaga aattaaaatt taatatatta
    13081 cgacaataaa gattatgaat ccagaggtca aattatcgaa gaaaagggaa actaatccct
    13141 tgtggagcgc aaaaacaaag acattgagtt atttctactt catctttaaa gaccgtgatt
    13201 ttaggggctc gctatccaat ttcatttatc aacacaaaag atccacaccc actttttcga
    13261 gtcatacttt cggaaatgct gctttgtttt atcatacaaa aacatttact ttttgaacgt
    13321 tttcatatct tgcgtgtata acttttcaaa caatttaaaa attaccgtcg tatgagaact
    13381 tcaatgaaac ttattctcgg ggtgttgcta acagccctct cgctccaggg ctttgcccaa
    13441 aaaccggaac ctgtatattc tgtagtgcgt caaatacacg atttcgattg gtacgaacag
    13501 caagccaagg cgtggaaaca ggaaatagac cgtggaacta cggataaaat ggcttgggtg
    13561 tattggttta tggctaatag aatggcttgt aggttttgcg accaaaagaa atgggaaagt
    13621 aaggtaggtg attattttat tccccagaca aaacttattg aaatggcaga aaatgcaatc
    13681 ccaa
//
LOCUS       DATDNM010000006         2590 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_855214, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000006 DATDNM010000000
VERSION     DATDNM010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_855214"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..447)
                     /locus_tag="VI413_00120"
     CDS             complement(<1..447)
                     /locus_tag="VI413_00120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEY6913054.1"
                     /translation="MKRLHKILLFVLLTVFVPVISAYANEPEQKPGEQKEEKELDVRE
                     FILEHVSDSYVWHITKIGEHEIGIPLPVILYSNTTGWHMFMSSVFHESPVCEGFHIAN
                     EGKYKGKIVEMSSTGEEVRPFDISITKNVFALLFSSILMIVCIMYVA"
     gene            complement(448..843)
                     /locus_tag="VI413_00125"
     CDS             complement(448..843)
                     /locus_tag="VI413_00125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913055.1"
                     /translation="MKKLSQQLMSLFALVMLILGWTGWAILKKMYPDEAFTWYPYIPC
                     VFFLMGISMIIILAKNYKKEAKKLVNIYMILKLIKLVMAMVYLLAFYFIVRDDIRIFG
                     IVFAVFYGIYIGLETGIFYLIEKQIKKEA"
     gene            complement(847..1086)
                     /gene="atpC"
                     /locus_tag="VI413_00130"
     CDS             complement(847..1086)
                     /gene="atpC"
                     /locus_tag="VI413_00130"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit epsilon"
                     /protein_id="HEY6913056.1"
                     /translation="MKLEIITPEQIYFSGEVTSVTLPGTSGLFTVWENHAPLISSLTK
                     GKISYTANNKETDLIVDGGFAEVSNNTVTVCVESV"
     gene            complement(1111..2589)
                     /gene="atpD"
                     /locus_tag="VI413_00135"
     CDS             complement(1111..2589)
                     /gene="atpD"
                     /locus_tag="VI413_00135"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005846820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEY6913057.1"
                     /translation="MVDVFFDLKGNEEVKLPAIHDALSIDRGNGKELIVEIQQHIGEN
                     TVRTVAMDSTDGLRRGLKAVALGTAISMPVGNQVKGRLMNVIGDSIDGMKTLDKKGAY
                     AIHREPPKFEDLTTSQEILTTGIKVIDLLEPYVKGGKIGLFGGAGVGKTVLIMELINN
                     IAKGHNGFSVFAGVGERTREGNDLLREMIDSGVIRYGEEFKKSMEEGNWDLSKIDYSE
                     VEKSQATLVFGQMNEPPGARSSVALSGLTVAEAFRDGGGDGGGRDILFFIDNIFRFTQ
                     AGSEVSALLGRMPSAVGYQPTLATEMGTMQERITSTKNGSITSVQAVYVPADDLTDPA
                     PATTFSHLDATTVLSRKISELGIYPAVDPLESTSRILDPLIVGEDHYNTAQRVKQILQ
                     RNKELQDIISILGMEELSEEDRLVVTRARKVQRFLSQPFFMAAQFSGQPGVMVSIEET
                     IRGFKMILDGELDYLPEMAFLSVGTIDDAIAKGQKLIEQSKK"
BASE COUNT          801 a          609 c          449 g          731 t
ORIGIN      
        1 tgccacatac ataatgcaaa caatcatcaa aatactactg aataaaagag cgaaaacgtt
       61 cttagtgatt gaaatatcga aaggacgaac ttcttcacct gtactgctca tttccacaat
      121 tttgcctttg tattttcctt cgttggcaat atgaaagcct tcgcaaacag ggctttcatg
      181 gaaaacggaa gacatgaaca tatgccaccc cgtagtattg ctataaagta ttaccggaag
      241 cggaattcca atttcatgtt caccaatttt tgtaatatgc caaacgtaag aatccgaaac
      301 gtgttcaaga ataaactcac gcacatccaa ttccttttcc tctttttgct ctcccggctt
      361 ctgttccggc tcattggcat aagcacttat aaccggtacg aaaacggtta agagcacaaa
      421 aagtaatatt ttatgtaaac gcttcattta cgcttctttt ttaatttgtt tctcaattaa
      481 ataaaaaatg ccggtttcca gtccaatata aataccataa aatacagcaa acacaattcc
      541 gaaaatccga atatcatccc gtacaataaa ataaaatgcc aaaagataaa ccattgccat
      601 tacaagtttg atgagcttaa gaatcatgta gatatttaca agtttcttag cctctttctt
      661 gtaattctta gcaagaatta tgatcattga aatacccata agaaagaaaa cgcaaggtat
      721 atatggatac caggtgaatg cttcgtccgg atacattttc ttgagaattg cccaaccagt
      781 ccagcctaaa ataagcataa ccagagcgaa taaactcatt aattgttggg atagcttttt
      841 catttcttaa accgattcaa cacaaaccgt aacagtgtta ttgctcactt cagcaaaccc
      901 gccatcaact attaaatcag tttctttatt attagccgta tagcttatct tacctttcgt
      961 caaagaagaa atcagcgggg catgattttc ccagaccgta aaaaggccac ttgttccggg
     1021 caaggtaacc gaagttactt cacctgaaaa ataaatctgt tcgggagtga ttatttctaa
     1081 tttcatttta ctgctttacg tacccggggg ctacttcttc gattgttcta ttaacttctg
     1141 ccctttagca attgcatcat caattgttcc aacgctcagg aatgccattt ccggaagata
     1201 atctaattcg ccatccaaaa tcattttgaa tccacgaata gtttcttcga tagacaccat
     1261 tacacctggc tgaccggaga attgagcggc catgaaaaat ggttgcgaaa gaaaacgttg
     1321 tactttacga gcccgagtta caaccaaacg gtcttcttcc gataactctt ccatgccaag
     1381 aatcgagata atatcctgaa gttctttgtt acgttgcaga atttgcttta cacgttgcgc
     1441 cgtattataa tgatcttcac caacaatgag cggatcgaga atgcgtgaag tagattccag
     1501 cggatcaact gccggataaa tacctagttc agaaatctta cgactcaata ctgttgtagc
     1561 atccaagtga gagaaagtag ttgccggagc gggatcggtc aagtcatctg caggtacata
     1621 aaccgcctga accgaagtga tagaaccgtt tttagtcgaa gtaatacgtt cctgcatagt
     1681 acccatttcg gtagccagcg ttggttggta acctactgct gaaggcatac ggcccaacaa
     1741 agccgaaact tcggaaccag cctgagtaaa acggaagata ttatcaataa agaacaaaat
     1801 atcacgtcca ccaccgtcac cgccgccatc acggaaagct tcagcaacag tcaaacccga
     1861 taatgcaacc gaagaacgtg ctccgggagg ttcgttcatt tgtccaaaca caagggttgc
     1921 ctgagatttc tccacttcag agtaatcgat ttttgacaaa tcccagttgc cttcttccat
     1981 gcttttttta aactcttccc cgtaacggat aacgcccgag tcaatcattt cgcgcaaaag
     2041 gtcgttacct tcacgggtac gctcacctac acctgcaaaa acagaaaaac cattgtgacc
     2101 tttagcaata ttgttgatta gctccatgat caatacggtt ttacctacac cggcaccacc
     2161 aaaaagacca attttacctc cttttacata cggctcaagc aagtcaatta ccttaatacc
     2221 cgtagtcaga atttcctggc tggtagtcag atcttcgaac ttaggtggtt cccgatggat
     2281 agcgtaagca ccttttttat ccaacgtttt cataccatcg atggagtcac cgattacatt
     2341 catcaaacgt ccctttacct gattgccaac cggcatggaa atagccgtac ctaatgcaac
     2401 agctttcaaa ccacgacgaa gtccgtccgt agaatccata gccactgtgc gaacagtgtt
     2461 ttctccaatg tgttgttgaa tttcaacaat cagttctttc ccatttccac ggtcgatgct
     2521 caacgcatcg tgaatggcag gtaatttcac ttcttcattt ccttttaaat caaagaaaac
     2581 atcgaccaca
//
LOCUS       DATDNM010000007         2642 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1496679, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000007 DATDNM010000000
VERSION     DATDNM010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1496679"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(413..1285)
                     /locus_tag="VI413_00140"
     CDS             complement(413..1285)
                     /locus_tag="VI413_00140"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005789633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HEY6913058.1"
                     /translation="MENVIVGIGEILWDVFPTGKVLGGAPANFAYHVSQFGFEGYAVS
                     AIGGDELGDEIVGVLSNNKLKYLIGTTPYATGTVQVTLSGNGIPQYEICENVAWDNIP
                     FTEEMEELARKTKTVCFGSLAQRSSVSRQTINRFLDCVPKTALKIFDINLRQHFYTLE
                     LIEHALDRCNILKINDDEIKIVGELFGWQSKSELEICNQLLHNCNLEIVVLTKGTEGS
                     YVVTKTETSFKPTPLVEVADTVGAGDSFTAGFVASLLKGKSIPEAHQIAVDVSAFVCT
                     QHGAMPVLPDYITR"
     gene            complement(1330..>2642)
                     /locus_tag="VI413_00145"
     CDS             complement(1330..>2642)
                     /locus_tag="VI413_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005782973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HEY6913059.1"
                     /translation="TFVAINGGLLFGLNMAGISGAVDMIKGQFSLTDSGLGTVAALLT
                     FGCLIGALFTGTFTEKYGRKKVMLFTAIVYIISAFGCALSGSAAVLTILRILSGLAVG
                     ATSVVAPMYISEIAPAHNRGRLVSFNQFAITIGIVLAYIFDYFLIGFGENSWRYMLAV
                     PGAFGIFFLIFLIVKFPESPRWLLAHGKKDEAIKVLTSIGGVALVKEELPEMESTLLA
                     EQKKEKMSVGELFKGKTGKIVLIGTLIAALQQITGINAVIMFSPEIFQAAGSAKGDSV
                     MQAMIVGLVNFLMTIVALWLVDKRGRKTLLLWGAVGMIVSLAYLTLEFAKPVQNGVGV
                     LVALLVYISFFAASFAPVMWVIISEIYPNRIKGVAMSFSTAVSWLCTFLTVYFAPVIH
                     GALGLQYLFGIFGIFSIIAFVFVKFWIPETKGKSLEQIEKELGL"
BASE COUNT          866 a          623 c          421 g          732 t
ORIGIN      
        1 actgcaataa tacagaaaat tcttaatata gcaaacaaaa tttattatgt tacgtatgga
       61 aaacgaataa attctaagag ttatagggta gtgactgaca cattatagat taatgactat
      121 attatatacg tcacacgtta aatataaggg gctttgcccc taaaacccta ctcacttttt
      181 tgtcttgaaa caaaaaagta agcaaaaaaa ttcaagactc cgcccacctc actcgaaaaa
      241 cttacgctca ataggctcaa atcgtccaaa ctcaccccga cgaaatacgt cggagctcaa
      301 acaggacgat tcttaaacgc ctatttcact tgtttttcgg ttcattggtc gaggtcggtc
      361 gttagccagc cttggcaaat gatatgttca aattataatg cgtcagtcct aactatcgtg
      421 taatgtaatc gggtaaaaca ggcatggctc catgttgagt acatacaaat gccgaaacat
      481 ccacggcaat ttggtgtgct tcgggaatac ttttcccttt caacaaagaa gcaacaaatc
      541 cggctgtaaa agaatcaccg gcaccaaccg tatcagccac ttccaccaaa ggtgttggct
      601 taaacgatgt ttctgtttta gtaaccacat aacttccttc cgtccccttc gtcagaacaa
      661 cgatttccag attgcagtta tgcaaaagct gattgcaaat ttccaattcg ctctttgatt
      721 gccatccaaa caattcccct acaattttta tttcatcatc attaattttt aaaatattgc
      781 aacggtctaa tgcatgttcg atcagttcaa gtgtatagaa atgctgacgc aaattaatat
      841 caaatatttt tagggccgtt tttggcacgc aatcaagaaa acggttgatt gtctgccttg
      901 aaacgctgct acgttgtgct aatgagccaa agcaaactgt ctttgtttta cgggccaact
      961 cttccatctc ttctgtaaac gggatattat cccaggccac attctcacag atttcgtatt
     1021 ggggaatacc atttcccgaa agtgtgacct gaacagtacc tgttgcataa ggagttgttc
     1081 caatcagata ttttaattta ttattactca ggacacctac aatctcatca cccagttcat
     1141 ctcctccaat tgcacttacg gcatatcctt cgaatccgaa ctgagacaca tgatatgcaa
     1201 aatttgcggg tgctccaccc agcactttac ctgttgggaa tacatcccat aaaatttctc
     1261 caatacctac aataacgttt tccatgattt tttttaatag taaatggtaa atgataaaat
     1321 tgtcaatgat tatagtccta attccttttc aatttgttcc aatgattttc ctttggtttc
     1381 aggaatccag aatttcacga acacaaatgc aataatgctg aatatgccaa atatcccgaa
     1441 taaatactgt aaccccaacg ctccatgaat taccggagca aaatatacgg taaggaaagt
     1501 acacagccaa cttaccgctg tggaaaacga catggccaca cctttaatcc ggttcggata
     1561 aatttcggaa ataataaccc acataaccgg tgcaaacgaa gcagcaaaga atgaaatata
     1621 aaccaacaaa gcaaccaata ctcccactcc gttttgcact ggttttgcga actctaacgt
     1681 gagataagcc aatgacacta tcattcccac agcaccccat agcaacaatg ttttgcgtcc
     1741 acgtttatct accaaccaca acgccacaat cgtcatcaga aagttaacta aaccaacaat
     1801 catagcctgc attactgaat cgcccttagc cgagcctgcc gcctgaaata tctccggcga
     1861 aaacataata acagcattaa tacccgtaat ttgttgcaaa gctgctatca gtgttccaat
     1921 caaaacaatt tttccggttt tacctttaaa caattctcca acggacattt tttccttttt
     1981 ttgttcagcc aataaagtac tttccatttc gggcaattcc tcttttacca atgctacacc
     2041 tccaatactt gtaagaactt taatggcttc atctttttta ccgtgagcca ataaccaacg
     2101 tggactttcc ggaaacttga caataaggaa aatcaaaaaa aagataccaa aggcacccgg
     2161 cactgctaac atataacgcc agctattttc gccaaaaccg attaaaaaat aatcgaagat
     2221 ataagctaat acaataccaa tggtaattgc aaactgatta aaagacacca aacgaccccg
     2281 attatgtgca ggtgcaattt ccgaaatata catgggtgca accactgatg tagcacctac
     2341 agccaaacct gaaagaatac gcaaaatagt caatactgct gctgatccgg acaatgcaca
     2401 tccaaaagct gaaatgatat aaactatagc tgtgaaaagc attactttct tacggccata
     2461 tttttcggta aaagttccgg taaataaggc tccaatcaaa cagccgaaag ttagcaaggc
     2521 tgctaccgtt cccaatccac tgtcagttag cgagaactga ccttttatca tatccacagc
     2581 ccctgaaatt cctgccatgt ttagcccgaa gagcaaacct ccattgatag ctacaaaggt
     2641 tg
//
LOCUS       DATDNM010000008         2759 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_108377, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000008 DATDNM010000000
VERSION     DATDNM010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2759
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108377"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..631)
                     /locus_tag="VI413_00150"
     CDS             complement(<1..631)
                     /locus_tag="VI413_00150"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY6913060.1"
                     /translation="MSVYYGSIEAGGTKFVLAIADEHFNIIKKFKFATTTPQETISKT
                     IKYFKENRVSAIGLGSFGPIDLNLSSKTYGYITSTPKVGWKNINLVGQLKEALDIPIY
                     FTTDVNASAYGEMKNTGIKNLVYLTIGTGIGGGAIQDGYFIGGIGHSEMGHQRINRHR
                     DDLTFEGICPFHGDCLEGVAAGPSLEARTGILGEKISSDDPIWDILSYYI"
     gene            complement(644..2596)
                     /locus_tag="VI413_00155"
     CDS             complement(644..2596)
                     /locus_tag="VI413_00155"
                     /EC_number="2.7.1.211"
                     /inference="COORDINATES: protein motif:HMM:TIGR01996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose-specific PTS transporter subunit IIBC"
                     /protein_id="HEY6913061.1"
                     /translation="MNHKQVAERILNAVGRDNIQGAAHCATRLRLVLKDTGVIDQEAL
                     DNDPDLKGTFEAAGQYQIIVGPGDVNTVYEEFIKLTGISEASTADLKEIAGSQKKQNP
                     VMALVKLLSDIFVPLIPALVAGGLLMALNNALTAEHLFATKSLVEMFPMWKGFADIVN
                     TMSAAPFTFMPILIGYSATKRFGGNPYLGAVIGMIMVMPGLINGYNVAEAISNHTMTY
                     WDIFGFKVAQAGYQGQVLPVIGVAFILAKLERFFHKYLNDAIDFTFTPLLSVIITGFL
                     TFTIVGPALRFVSNGLTDGLVGLYNTLGALGMLVFGGFYSAIVVTGLHQSFPAIETML
                     ITNYQHSGIGGDFIFPVAACANMAQAGATFAILFVTKNIKTKALAAPAGVSAILGITE
                     PALFGINLKLKYPFFIALGASAIGSLFMGLFHVLAVSLGSAGLIGFISIKAGYNLQFM
                     ISIFISFLIAFVVTSIYGRRMEAKSITKEKNKQNATTQYQPEKVIIDPVKSGELLAPI
                     NGFVIPLSDVSDPVFSKEIMGKGIAIKPKSGELFSPADGEIIIAYETGHAYGIKTKNG
                     GEVLLHIGIDTVSMNGNGFIQNVKVGQKVKAGDLLGSFDKEEIKKSGFDDTVIIVITN
                     SASYNEILPLSENVDIKVGEKILLLN"
BASE COUNT          880 a          558 c          431 g          890 t
ORIGIN      
        1 caatataata gcttaagata tcccagatag gatcatctga agaaattttt tccccaagta
       61 ttcctgttct agcttcaaga ctcggacccg ccgcaactcc ttcaagacaa tcaccatgga
      121 agggacagat tccttcaaaa gtaagatcat ctctatgacg atttattctt tggtgcccca
      181 tttccgaatg cccaatgcca ccaataaaat atccatcttg aattgctccc cctccaatac
      241 ctgtaccgat tgttaaataa acaagatttt ttattcctgt atttttcatt tcaccatagg
      301 ctgaggcgtt tacatcagta gtaaaatata ttggaatatc aagtgcttct tttaattggc
      361 caactaaatt tatatttttc caaccaactt ttggcgtcga agtaatgtaa ccatacgttt
      421 tacttgaaag gtttagatca ataggcccaa atgatcctaa accaatggca gaaactcggt
      481 tttctttaaa atatttaatc gtcttactta tagtttcttg tggcgtagta gtagcaaatt
      541 tgaatttttt tataatatta aaatgttcat ctgcaatagc aagtacaaat tttgtaccac
      601 cagcctcaat tgatccatag tatacggaca tagttcgctc cctctagttc aataatagaa
      661 tcttttctcc aactttgata tcaacatttt cactcaatgg caaaatctca ttgtaacttg
      721 ctgaattggt aataacaata atcacagtat catcgaatcc actcttcttg atttcttctt
      781 tatcaaaaga tcctagtaaa tcccctgctt ttactttctg gccaacttta acattttgta
      841 tgaatccatt accattcatt gaaacagtat ctattccaat atgtaaaaga acttcacctc
      901 cattttttgt ttttatacca taagcgtgac ctgtttcata agcaataata atttctccgt
      961 cggctggtga gaaaagttct ccagatttag gcttgattgc aatacctttt cccataattt
     1021 cttttgagaa aacagggtca cttacatcag acagaggaat cacaaatcca tttatcggag
     1081 caaggagttc gccactttta actggatcga taataacttt ctcaggttgg tattgagttg
     1141 ttgcattctg tttatttttt tctttcgtaa tagatttagc ttccatccgc cgaccataga
     1201 ttgaggtaac aacaaaggca ataagaaagc taataaatat cgaaatcata aattgtaagt
     1261 tatacccagc tttaatagag ataaagccaa ttaatcctgc ggatcccaga ctaaccgcaa
     1321 ggacatggaa taatcccata aataatgaac caattgctga agccccaaga gcaataaaga
     1381 acggatattt tagttttaga ttaatcccaa ataacgcagg ttctgtaata cctagaatag
     1441 cagatacacc agctggagct gcaagagctt ttgtcttaat gtttttagta acaaataaaa
     1501 ttgcaaaagt tgcaccagct tgagccatat ttgcgcaggc cgcaactgga aaaataaagt
     1561 ctccaccaat accactgtgt tgatagtttg tgattaacat tgtttcaatg gccggaaaac
     1621 tctgatgtaa tccagttact actattgccg agtagaagcc tccaaacaca agcattccta
     1681 gtgctcctag tgtgttataa agtccaacca aaccatctgt caagccattt gatacaaaac
     1741 gaagtgctgg tcctacaata gtgaatgtga gaaatccagt tatgatgact gaaagcaacg
     1801 gagtaaatgt gaagtctata gcatcgttaa ggtatttatg aaagaatctc tcaagtttag
     1861 caaggataaa agccacccca attacaggaa gaacttgtcc ttgatatcca gcctgggcaa
     1921 ctttaaaacc aaaaatatcc caataagtca ttgtatgatt agagattgct tcagcaacat
     1981 tatatccatt aataagccca ggcattacca taatcatacc tataacagca cctaaatatg
     2041 gatttccgcc aaaccttttt gtggcagaat aacctattaa aattggcatg aatgtaaatg
     2101 gtgcggcact catagtatta acaatatcag caaatccttt ccacatagga aacatttcaa
     2161 caagtgattt cgtcgcgaaa agatgttcag ctgttagcgc attattaaga gccattaaca
     2221 gaccaccagc tacaagagct ggtatcaaag gaacaaaaat atcagaaagc agctttacaa
     2281 gtgccattac tggattttgt tttttttgac ttcctgcaat ctctttgaga tctgcagttg
     2341 atgcctcact tattcctgta agtttaataa attcttcgta tacagtgtta acatcacctg
     2401 gccctacaat aatttgatat tgaccagctg cttcaaaagt ccccttaaga tctgggtcat
     2461 tatctagagc ctcttgatca ataacgccag tatcttttag gactaaacgt agtcgtgtcg
     2521 cacaatgtgc agctccttga atgttatcac gcccaactgc atttaaaatg cgttcagcta
     2581 cctgcttatg attcataatt ttctcctcaa ataaaatgat ttcgcttaca gaagttattt
     2641 tatcattttt ctgatatatg tcaagcgctt gccatgtttt tttgtttttt tatttttccg
     2701 cgcttgttta tattgatttt tttataaaaa acgtttatca taaatatata taatttagt
//
LOCUS       DATDNM010000009         5840 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1603518, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000009 DATDNM010000000
VERSION     DATDNM010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5840
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1603518"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..454)
                     /locus_tag="VI413_00160"
     CDS             complement(<1..454)
                     /locus_tag="VI413_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004309340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEY6913062.1"
                     /translation="MSILVNKDTKLVIQGITGRDGKFHTGKMKEYGTNIVAGVSPGKE
                     GLVLDGIPVFNSVAGAVKATGANTSIIFVPAAFAADAILEASEAGIKLVVAISEGLPI
                     QDMIRITPILKQNGTLLIGPNCPGLITPGEALVGILPANIFKKGNIGFI"
     gene            complement(518..1651)
                     /gene="sucC"
                     /locus_tag="VI413_00165"
     CDS             complement(518..1651)
                     /gene="sucC"
                     /locus_tag="VI413_00165"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEY6913063.1"
                     /translation="MKIHEYQARQLFREYGIPVTDDVLCYTVSEVEKAAREMNRMVVV
                     KAQVLVGGRGKAGGVKLARTPEEAVSAAKQILGMDIKGCKVEKVLVADAVNITKEFYV
                     GLINDRNTKTVTLMASSEGGVEIEEVAKVSPEKIIKFHINPLTGLLDYQARDIALQLF
                     DDIKLAQKAASIFTKLYKLYVATDATIAEINPMVLTPDNEVLAIDGKMNFDDNALFRQ
                     PKILAMREPDEDELVEIDANSKGLSYIRLDGNIGCMVNGAGLAMATMDMIKLYGGEPA
                     NFLDIGGSSSPQKVIDAMNILLNDKNVKAVMINIFGGITRCDDVAKGLLKAMEVISTD
                     IPIVVRLSGTNAAEGLEILKHSNLPTVSSMSEAAQKAIELSRQ"
     gene            2019..2972
                     /locus_tag="VI413_00170"
     CDS             2019..2972
                     /locus_tag="VI413_00170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009122071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6913064.1"
                     /translation="MRVLVSTRLLPEGFSELKNQFEVVFPENEIFSKEEVMLLLPGFD
                     AFVPTFQFKVDKDVINAAADRVKIIANYGVGYNNIDVEYASKRGIVVTNTPDPVVEPT
                     AEHAFALMLAAARRVAECDRKLRIPDGLKWGVLENLGQTLYGKTLGIVGMGRIGQALA
                     RRALASGMKIVYFNRTRLSSKIEVRYQAEWMEINELLKVSDVVSLHTPLTADTHHLIN
                     SDSLKLMKSDSILVNTARGPVVDEIALVEALKNKWIFAAALDVYEFEPNITSGLLCLD
                     NVVLAPHSGTATVDARNDMSRFVSQNIIRFFAGRTDISRVN"
     gene            3056..3604
                     /locus_tag="VI413_00175"
     CDS             3056..3604
                     /locus_tag="VI413_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6913065.1"
                     /translation="MSLTEEDLQKQLSHPTKRTGAFSVVVRSYQERLYWHIRKMVLSH
                     EDANDVLQNTFMKAWNGLDGFRGDSQVSTWLYRIATNETLTFLANKKMRNSNSIDDVE
                     EGLLQNLRADNYFNGNEIQLKLQQAILTLPEKQRLVFNMKYFDDITYEQMESILGTSV
                     GALKASYHHAVKKIEKFFTEEE"
     gene            3705..4022
                     /locus_tag="VI413_00180"
     CDS             3705..4022
                     /locus_tag="VI413_00180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913066.1"
                     /translation="MKTNKNISLAEIGAELPFSVPENYFEQFALQIDEQIGYKQRSAH
                     RFIRPWMYAAAMVIGIMVLSPVFYSVYQNKATANTENYESYVLSQVDETVLMDCYVDD
                     STK"
     gene            4109..4576
                     /locus_tag="VI413_00185"
     CDS             4109..4576
                     /locus_tag="VI413_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913067.1"
                     /translation="MKTIKNLLVGLFLLVSALLQAENKEDFPRIEEMHNHKWEFLVTQ
                     AQLSPDEIDRVKPVFMHYEKTIWDLHQQNREFFKAAMKDAKKVNPNYADLNDRYVDFE
                     FKQAQLFKNYHMQLRKLLQPETLFKYYKAEREFKRKLLQDFQDRRHSERPRPQ"
     gene            4658..4728
                     /locus_tag="VI413_00190"
     tRNA            4658..4728
                     /locus_tag="VI413_00190"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4690..4692,aa:Cys,seq:gca)
     gene            4866..>5840
                     /locus_tag="VI413_00195"
     CDS             4866..>5840
                     /locus_tag="VI413_00195"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF014499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEY6913068.1"
                     /translation="MKIRFNIQFKTQWGESMHLLRHTSPQSGADSFVDYEMQCNDKSD
                     WTVEISVDNSDFVSYQYAIQTVNKLFIYEYGGVRTVNFPMHNETVNIQDNWRASYGDS
                     PFKTAAFSDCFFKRVPKASIEKNEGNLVLSINCPQMEPNRHFAIVGNQDALGNWEVTN
                     KVRLDESQYPIWSITLDVNKINFPLEYKYLIVDTTTDEVLAWGGGPNRLVRNADKEAL
                     TVVNDEHFIRLIPSWKGAGVAIPVFSLRSEDGFGVGEFNDLKKMVDWAKKTGQRIIQT
                     LPINDTILYHTNYDSYPYNAVSVYALHPIYLHLDKIGKLKTKAQKEYFQ"
BASE COUNT         1752 a         1052 c         1196 g         1840 t
ORIGIN      
        1 aaataaatcc gatattccct tttttgaata tgttggcagg taaaattcca accaatgctt
       61 cgccgggagt aatcaagccg ggacagtttg gaccaataag caaagttcca ttttgtttta
      121 gaataggagt gatgcgaatc atatcctgga ttggaagtcc ttcgctgata gctacaacca
      181 gtttaattcc ggcttctgaa gcttccagaa tagcatcggc ggcaaaggca gccggtacaa
      241 aaataataga tgtgttagct cctgtggctt tcacggctcc tgccactgag ttgaaaaccg
      301 gaatgccatc tagtactaga ccttctttgc cgggcgaaac gcctgctaca atgttagtgc
      361 cgtattcctt cattttgcca gtgtgaaatt taccgtcgcg accggtaatt ccctgaataa
      421 ccaatttggt gtctttgttg actaatatgc tcataatatt tattaatagt tagaatgttg
      481 atgttgataa taagtcccct ttaggggatt taggggtcta ctgccgacta agttctattg
      541 ctttctgagc ggcttcactc atagaactta cagttggaag gtttgaatgt ttcaaaattt
      601 ccaatccttc agcagcatta gttcccgaaa gtcgcactac aattggaatg tctgttgata
      661 taacttccat tgcttttagc agtccttttg ccacatcgtc acatcgggtt attccaccga
      721 aaatgttaat cattaccgct tttacatttt tatcgtttag caagatattc attgcgtcga
      781 taactttttg agggcttgag ctgccgccaa tatccaggaa gttggcaggt tctccgccat
      841 aaagttttat catatccata gtcgccattg ccagtccggc accattcacc atacagccaa
      901 tgttaccgtc taaacgaatg tacgacagtc ctttcgaatt tgcatctatt tccacaagtt
      961 catcttcgtc cggttcgcgc atggccagaa ttttaggttg gcggaacagt gcattgtcat
     1021 caaaattcat ttttccatca atggccagca cttcattgtc cggagtcaat accattgggt
     1081 tgatttctgc aatggtggca tcggtggcaa catacagttt gtatagttta gtaaaaatag
     1141 aagcagcttt ttgagccagt ttaatgtcgt caaaaagctg taaagctatg tcccgggctt
     1201 ggtaatcaag caatccggta agcgggttga tgtggaattt gataattttc tccgggctga
     1261 ctttggcaac ttcttcaatt tcaacgccac cttctgaact ggccatcagg gtaactgttt
     1321 ttgtgttgcg gtcgttgatt aagcctacgt aaaattcttt cgtaatgttt acggcatcgg
     1381 caaccagtac tttttccact ttacatcctt tgatgtccat gcctaaaatc tgttttgcag
     1441 ccgatactgc ttcttcggga gttcgggcaa gttttacgcc tcctgctttt ccgcgtccac
     1501 ctactaaaac ctgcgcttta actacaacca ttcggttcat ttcgcgtgcg gctttctcta
     1561 cttcgctaac tgtgtagcac aatacatcgt cggtaaccgg aatgccgtat tccctgaata
     1621 gttgccttgc ttgatactcg tgaatcttca tgtaatttaa ttggttttgt tttttgacat
     1681 tagatttcga aattaattta actggtaatt ttgccggcta attatttctt ttttattttt
     1741 ctctagaatg tttaacgcat ttggagtaaa cttgttttca gaaaacatga tttttcaaga
     1801 ataaatattt aatcaattta tatcgactta tctgagaaaa agaaataatc ttaataaatt
     1861 gctcaaatat agaattttat attttgtttt gtataatata tttataaaaa tgtgcgaaat
     1921 taactcaaac cactcaaatt tattaaataa tcatttttta gtgattgtaa aacgaagtat
     1981 ttttgccttt cttccataaa ataataaaac aataagttat gcgtgttttg gtttctacgc
     2041 gtttgcttcc ggaaggtttt tcagaattga aaaatcagtt tgaagtcgtt tttcctgaaa
     2101 atgaaatatt ttcaaaggaa gaagttatgc ttttactgcc tggtttcgat gcttttgtgc
     2161 ctacctttca gtttaaagtc gataaagatg taattaatgc ggctgctgac cgagtgaaaa
     2221 ttattgccaa ttatggtgtg ggttacaaca atattgatgt tgaatatgct tccaaacgcg
     2281 gaattgtggt aactaacaca cctgacccgg tcgttgaacc aactgcagag catgcttttg
     2341 cattaatgct ggcagctgct cgccgtgtag ctgaatgcga tcgaaaattg cgcattcctg
     2401 atggtttgaa atggggcgtg ctcgaaaatc tgggtcagac tctatatgga aaaacacttg
     2461 gaattgtcgg tatggggcgt attggacaag cgttggctcg cagggctttg gcaagtggga
     2521 tgaagattgt atacttcaat cgtaccaggc tttcttcaaa aattgaagtt cgttatcagg
     2581 cagagtggat ggaaataaat gagctgctga aagtttcgga tgttgtttca ttacatacgc
     2641 cacttacggc tgatacccat catttgataa acagtgacag cctgaaacta atgaaatcag
     2701 attctatttt ggtcaataca gcccgtggtc cggtggtgga tgaaatagct ttggtcgaag
     2761 ctttgaaaaa taaatggatt tttgcggctg cattagatgt gtatgaattt gaacccaata
     2821 taacttccgg attgctttgt cttgataatg tggtgcttgc tccacatagc ggaactgcaa
     2881 cagtggatgc acggaatgat atgagccgtt ttgtatcgca aaatatcata cgcttttttg
     2941 ccgggcgaac ggatatttcg cgggtaaatt aaaccattgt tgatccaata agtcaaatga
     3001 gaaagttttt taaaataaat aggccgcggg tatattttgc ccaagtaaaa attatatgag
     3061 tctaaccgaa gaggatttgc aaaaacaatt gagtcacccg actaaacgca ccggagcgtt
     3121 ttcagtggtg gttcgttctt atcaggaacg gctctattgg catattcgta agatggtttt
     3181 gtcgcacgaa gatgcaaatg atgtattgca aaatactttt atgaaagcat ggaacgggtt
     3241 ggatggtttt cggggagact cgcaggtctc aacctggctt taccgaattg caacaaacga
     3301 aacgcttact tttctggcta ataagaagat gcgaaattca aactctattg atgatgtgga
     3361 agagggtctg cttcaaaacc tgagagctga taattatttc aatggaaatg agatacaact
     3421 taaactgcaa caagcaatac ttactttgcc tgaaaagcag cgactggtgt tcaatatgaa
     3481 atactttgat gatattacct atgaacaaat ggaaagcata ttgggaactt ctgttggtgc
     3541 attaaaagca tcttatcatc atgcagtaaa aaagattgag aagtttttta ctgaggaaga
     3601 atagaaaata agtgctcagg gatatttgat agttttatta aaataaatat ctgtaattaa
     3661 acctaattga attgtaatcg tcaaatgaaa agtataaacc gaatatgaaa acaaataaaa
     3721 atatatcact cgcagaaata ggagcggaat tgccatttag cgttcccgaa aactattttg
     3781 aacagtttgc cctacaaata gatgagcaaa ttggatataa acaacggtcg gctcatagat
     3841 ttattcgccc ctggatgtac gcagcagcta tggttatagg aataatggtt ttgagtccgg
     3901 tgttttactc cgtttatcaa aacaaagcaa ctgccaatac tgaaaattat gaatcgtatg
     3961 tcctgtcgca ggttgatgaa actgttctga tggattgtta tgtcgatgat tcaacgaaat
     4021 aggaattttc atttttgata ggataatgat gttaaaatag tattgaaagg aactggtaag
     4081 ttttttacaa taaaaataat atgaacaaat gaaaacaata aaaaatctac ttgtaggatt
     4141 gtttctttta gtaagtgctt tattacaagc cgaaaacaaa gaagattttc caagaataga
     4201 ggaaatgcat aaccacaaat gggaattttt ggttactcag gctcagttat cccccgatga
     4261 aatagacaga gttaagccag tctttatgca ttatgaaaag actatatggg atttgcacca
     4321 acaaaatcgt gagtttttta aagcggcgat gaaagatgct aaaaaggtta acccaaatta
     4381 tgctgatttg aatgacaggt acgttgattt cgagtttaaa caagcacaac ttttcaaaaa
     4441 ctatcacatg cagctacgta agttattgca gccggagaca ctttttaaat actataaagc
     4501 tgaacgggaa tttaaacgca aactattaca ggattttcag gataggcgtc attcggaacg
     4561 gccacgtcct cagtaatata cttctttttt ttagcttttt gtaccaaaag ttttggaacg
     4621 aaccaaaaat atactatctt tgcacaccga aaaacaaggt tccttggccg agtggctagg
     4681 cgccggtctg caaaaccgtt tacggcggtt cgaatccgcc aggaacctca aaaccttctc
     4741 agtttaatta ctgagaaggt ttttttttca atcgtttgca ggttatcttt ggtagtgagt
     4801 ttaaaatcag cttttttttt gcacattatt ttcgtaaatt tgtaccgaaa taaaagggtg
     4861 gagttatgaa aatcagattt aatatacaat tcaaaacgca atggggagaa tcgatgcacc
     4921 ttttgcggca cacctcacct caatctggag ctgattcatt tgttgattac gaaatgcaat
     4981 gtaacgataa atcggactgg acggtggaga tttctgtcga taactccgat tttgtttcat
     5041 atcaatatgc tattcaaacg gtaaacaaat tgtttattta tgaatatggc ggtgtgagaa
     5101 ctgtcaactt cccaatgcat aatgaaaccg taaatatcca ggataactgg cgggcttcct
     5161 acggtgatag tccgtttaaa acggctgctt tctcagattg tttctttaag cgggttccca
     5221 aagcaagtat tgaaaaaaat gaaggtaatc tggtattgag cattaattgc ccgcagatgg
     5281 agccgaatcg tcattttgca attgttggaa atcaggatgc tcttggaaac tgggaagtga
     5341 caaataaagt tcgcctcgac gaatcccaat atccaatctg gagtattacg cttgatgtaa
     5401 ataaaataaa tttccctctc gagtataaat accttattgt agatactact actgatgaag
     5461 tgctggcatg gggtggtggc ccaaacagat tagttcggaa tgccgataaa gaggctctta
     5521 cagttgtaaa cgatgaacat tttatccggc tgattccatc gtggaaaggt gctggtgtgg
     5581 caatacctgt tttctcgctc cgaagtgaag acggatttgg agttggtgaa ttcaatgatt
     5641 taaaaaagat ggttgactgg gctaaaaaaa caggtcagcg gattattcag acccttccaa
     5701 taaacgatac cattctttat cataccaatt acgattctta tccatacaat gccgtttcgg
     5761 tatatgcatt gcatccaatt tatttgcatt tggataaaat aggcaaactg aaaacaaaag
     5821 ctcaaaaaga atattttcag
//
LOCUS       DATDNM010000010         3633 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_962816, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000010 DATDNM010000000
VERSION     DATDNM010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3633
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_962816"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            176..1600
                     /locus_tag="VI413_00200"
     CDS             176..1600
                     /locus_tag="VI413_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009318787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monomeric [FeFe] hydrogenase"
                     /protein_id="HEY6913069.1"
                     /translation="MAFVNNTMIVRRDLMSKLIRLYHEGALVSEIDRIPLKMSPKNAQ
                     ARGRCCIHKERAVLKYKMLPILGYSIDEEVDELTPLSVYAEQALDRKEVKKTILTVVD
                     EACTACVKTNYVVTNLCKGCVARSCYMNCPKDAISFMDNGQAHINHSKCINCGICKEA
                     CPYHSIVYIPIPCEEACPVKAIQKDENGIEHIDESKCIYCGKCINACPFGSIYEVSQI
                     FDILQAINHGEQLVAIMAPSIMSQFNNTIGEIGNAVEKIGFIEAIEVAYGAMETTRLE
                     GAELQEKLEDGQQFMTTSCCPSYIELVNKHLVEMKPFVSHTKSPMYYTIEMAKEKYPD
                     AKVVFIGPCVGKRKEVQDNNMIDYILTFEEIDTLFTGLSIEMEKPAFEKETAPMSGRG
                     FARAGGVISAVQTMYPNLGVQPIQVANLNKKNIGLLRAYTKGKAPGNFVEVMACEGGC
                     ISGPCGKVDYGQAQKMFKKAMGEV"
     gene            1688..2050
                     /locus_tag="VI413_00205"
     CDS             1688..2050
                     /locus_tag="VI413_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HEY6913070.1"
                     /translation="MKNILSILGFISLGLGIIGAFLPLLPTTPFILLSAALFAKSSEK
                     MHKWLYNHRIFGEILRDFNENKTIPLYAKVISISMMWLSMLFTIFIIAKEKLWLQVIL
                     AAIAIGVSIHILRYKTKK"
     gene            complement(2159..3220)
                     /locus_tag="VI413_00210"
     CDS             complement(2159..3220)
                     /locus_tag="VI413_00210"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEY6913071.1"
                     /translation="MNLAWKISFPIALALLTYIFFAYKRLFTWHLMFTLLFVAVSVVA
                     YLELFFTIPALFQKLGYEIVFFSFLLISLLFRKKIQGALVKIISKLIPMTNNFSELYR
                     IVWKLVLLLFVYILGNIFLFYSGFANSTYQQLFQYVYLALLLALIIYEVFRVQIIRSK
                     LFKEEWWPIVTDQGKIVGSIQHFTSLNDENKYMHPIVRVFIIDKGMILLQKRSDDSLF
                     YPGLWDTAISNHVKMGETIEQCIDRTAEERYSLNNFKYMYLSNYTLELEKEYHYAFLF
                     VSCQQTEFKLNPTFAAHLKWWTQQQIEEELETGIFTDNFKVEYDLLKRSGLLETGKCE
                     CSCRLKDVIYQQSNLVNKE"
     gene            complement(3403..>3633)
                     /locus_tag="VI413_00215"
     CDS             complement(3403..>3633)
                     /locus_tag="VI413_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEY6913072.1"
                     /translation="VFDKEMAKRGYMTVDKGSVTVNGVSLTVCNPTDDSFQVAIIPYT
                     HEYTNFHQIEAGTVVNIEFDIIGKYVSRMMAF"
BASE COUNT         1253 a          699 c          621 g         1060 t
ORIGIN      
        1 ggcattaaaa agaaacaaca acagtagatt tttcaacatt atcctgagta tttcaactcc
       61 tctttcccgt tattaagaat caatgctttc attttgccag gttttgatta ctgaatattt
      121 tctttaatta gaacaaatca ctacctttgc agtctgaaac acaaaagact aaaagatggc
      181 gtttgttaac aacacaatga ttgtaagaag agacttaatg tccaaattga taagattata
      241 tcatgaagga gcattggttt ctgaaattga ccgcatccca cttaaaatgt ctcctaaaaa
      301 tgctcaagct cgcgggagat gctgtatcca caaagaacgt gcggtattga aatataaaat
      361 gctgccgatt ttgggctaca gcatagatga agaagttgat gagctcaccc cgctttcggt
      421 ctatgccgaa caagcattag accgaaaaga agttaaaaaa accattctga cagtagttga
      481 cgaagcctgc acggcctgcg taaaaacaaa ctatgtagta acaaatctat gtaaagggtg
      541 tgtagcccgc tcatgttata tgaattgccc taaagacgct atcagcttca tggacaatgg
      601 acaagctcat atcaaccata gcaaatgtat aaactgtgga atttgtaaag aagcatgtcc
      661 ctatcattca atcgtctaca ttcccattcc atgcgaagaa gcttgtccag tcaaagctat
      721 tcaaaaagat gaaaatggga ttgagcatat tgacgaatca aaatgcatct actgcgggaa
      781 atgcataaat gcctgcccat tcggttcaat atacgaagtt tctcagatat ttgatattct
      841 tcaggccata aatcacggag aacaactagt ggcaattatg gcaccttcaa ttatgtcaca
      901 attcaacaac acaataggcg aaataggcaa tgcagttgag aaaatcggat tcatagaagc
      961 gattgaagtt gcttatggag ctatggaaac tacccgactt gaaggggctg aacttcagga
     1021 aaaactggaa gatggtcaac aattcatgac cacatcttgc tgcccatctt atattgaact
     1081 agtaaacaag catttggtag aaatgaaacc attcgtttcg cataccaaat caccgatgta
     1141 ttatacaatt gaaatggcta aagaaaagta tccagatgca aaagtggttt ttatcggacc
     1201 gtgtgtaggc aagcgaaaag aagttcagga taacaatatg attgactaca tattaacttt
     1261 cgaagaaatt gatactttat ttaccggtct gtccattgaa atggaaaaac cggcctttga
     1321 aaaagaaact gcccctatgt cgggacgagg ttttgcccga gccggaggag ttatttccgc
     1381 agtacaaaca atgtatccaa acctgggtgt tcaaccaatt caggttgcaa atctgaacaa
     1441 aaagaacatt gggttgttac gtgcatatac caaaggaaaa gctcccggca actttgttga
     1501 agttatggct tgcgaaggcg gttgcatttc cggtccatgt ggaaaagtgg actatggcca
     1561 ggcacaaaaa atgtttaaaa aggcaatggg agaagtttaa tcctactgca gttttcatat
     1621 ctataacaca tagctttgcg tcaggtttat ttattgaacc tgacgctttt attttactac
     1681 atacaacatg aaaaatatac tatcgatctt aggattcatt agtctgggcc tgggaattat
     1741 aggagctttt ctgccattac ttccaacaac tccgttcatt ttattgtcgg cggccttatt
     1801 tgccaaaagc tcggaaaaaa tgcataaatg gctatacaac catcggattt tcggggaaat
     1861 tctccgagac ttcaacgaaa ataaaactat ccctctttat gccaaagtga tttcgatatc
     1921 tatgatgtgg ctatctatgc tcttcacaat tttcattatt gctaaagaaa aactttggtt
     1981 gcaagttata ttggcagcta ttgccattgg ggttagtatc catattctga ggtataaaac
     2041 aaaaaaatga gtaaacccat taagccagga atatcagaag taatttattg cttcaaaaat
     2101 tggaattgaa gtcataaact cataaactca aaaaaaataa agagtaatca aaaattgatt
     2161 actctttatt tactaagttt gattgttggt atatgacatc tttcaaccta caggagcact
     2221 cacactttcc agtttccaac aatccacttc gtttaagcaa atcatattca accttaaaat
     2281 tatctgtaaa aataccggtt tctaattctt cttcaatttg ttgctgggtc caccacttca
     2341 gatgtgctgc aaaagttgga ttcagtttaa attcagtttg ctggcaactt acaaataaga
     2401 atgcataatg atattccttt tcaagttcta aggtgtaatt tgacagatac atgtatttga
     2461 aattgttcag agaataccgt tcttcggcag tcctgtcaat acactgttca atagtctcac
     2521 ccattttaac gtgatttgaa attgccgtat cccaaagccc cggataaaac aaactgtcat
     2581 ctgacctttt ctgcaacaaa atcattcctt tgtcaattat aaacacacgt acaatgggat
     2641 gcatgtattt attttcatca ttcaaactgg taaaatgctg gatactacca actattttcc
     2701 cctggtcagt tacaattggc caccactctt ccttaaaaag cttagagcgg atgatctgaa
     2761 cccgaaacac ttcataaata atcaatgcca aaagtaacgc aagatagaca tattgaaaca
     2821 gttgctgata tgtagaattt gcaaaaccgc tataaaaaag aaaaatattt cccaatatat
     2881 aaacaaacaa aagcaaaact aatttccaaa ctatcctgta aagttcgctg aaattattag
     2941 tcataggtat taacttcgat attattttca ccaaagctcc ttgtattttc ttgcggaaca
     3001 gtaaagaaat gagtaagaac gaaaaaaata caatctcata acccagcttt tgaaacaaag
     3061 caggaatggt aaagaaaagt tcgagatacg caaccacact tactgccaca aaaagcaacg
     3121 taaacatcaa atgccacgta aacaaccttt tatatgcaaa aaagatgtaa gttaacagcg
     3181 ccaaagcaat tggaaaagaa attttccatg ctaaattcat tcctgaaaat tcatccacta
     3241 ttaaaaaaat caacagcggg aggaaatgta aaacgggatt aaaaaatgac tctcttattt
     3301 gttttctcaa cttttccata ttcattcaac tactttcatc ggtttactaa caaccattcg
     3361 actgatatag ttttatttct gttggaaaaa gtatagttct gactaaaaag ccatcatccg
     3421 gcttacatat tttccgataa tatcgaactc aatattaact acagtacctg cttcaatctg
     3481 gtgaaaatta gtatattcgt gagtatatgg gattatggca acctgaaagc tgtcatcagt
     3541 cggattacaa actgtcaaac ttacaccatt taccgttaca gaacctttat cgacagtcat
     3601 gtaccctctt tttgccattt ctttatcaaa gac
//
LOCUS       DATDNM010000011         7795 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1780, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000011 DATDNM010000000
VERSION     DATDNM010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7795
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1780"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VI413_00220"
     CDS             <1..305
                     /locus_tag="VI413_00220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEY6913073.1"
                     /translation="VIAPLAGIIPSAATAPALIIVGVLMASSVLDIDFNDFTEGFPAF
                     MTFIMMPFTYSIANGIAAGIISYTILKVATGKWKQVHWMMYILFVLVITRYIFLSE"
     gene            650..2464
                     /locus_tag="VI413_00225"
     CDS             650..2464
                     /locus_tag="VI413_00225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913074.1"
                     /translation="MKRLLLILSFVLSLSNFAVHAQNLLANPSFETWTTGNQAITNWV
                     ITTPANGTVALDTTHTDGTKSCKMFASGTYHEIYQYATVTPGKTYTLSLSYYIYGGDA
                     TDAGIWCNFKTAANGSNIVLSLADSLLLKGPGGATKFFANVKNSWQTYTCNVVAPAGS
                     TIFRFGIRTYKAGTVSWDKCSFTENLTPVINKSVSSLSGFNYVPGAGPSAQQSFTISG
                     SNLTNSMTVTAPANYELSTNSGAAFTALANPFTITPSGGVVSPVTLYARLKTGLTANT
                     YTGNINLTSGSLAQTIALTGTVAAPPVTITTSTTALSGFTYVEGSGPSTQQSFTLSGS
                     NLTSGIVVTPPTSNYEISISSGTAFSPLTTPFTISQSGGSIATTTIYVRLKSGVVAGN
                     YTGSITLSTTGATKTIALSGTVTVPAGISLSASSLTSFSYAVGGGPSTVKSFNVSGIS
                     LTSSVVITPPANFEISDTASPFTATGLILLVPSNGNVASTPIYVRLKSGLPVSAYNES
                     VSVSSTGFTAKTVSLSGNVLLTTGTPETSANSLSVYTSGANIVITGTEKDEMVSLYSI
                     TGMRLQTVKSQGERIEIAAQPGAIYLVKTATKAFKIIL"
     gene            complement(2542..5385)
                     /locus_tag="VI413_00230"
     CDS             complement(2542..5385)
                     /locus_tag="VI413_00230"
                     /inference="COORDINATES: protein motif:HMM:NF016146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HEY6913075.1"
                     /translation="MLNRRFKFLLLLGISVFAFAAVFATVPSGYYYFVKNKKQAALKT
                     ALHTYCSPMAELDYGGGAGFTWEGFFSTDRRADSTVIDMYSNTVRKQTSFSAVSGMHI
                     EHSFPKSWWGAYPNNAYKDLFHLYPADALANETKNNLPLGEVAGTPTFDNGVTKVGKN
                     GFETAYVDGCFEPADEYKGDFARSYFYISTIYENLAPLMQSPMTFTNNTYPFWKPWAL
                     DLLLKWHRQDPVSDKERKRIEAIYSIQGNRNPFIDYPDLVEYIWGKDTATIFPFPEET
                     EPFLVTPRRGASIDFGVILQNDTRTQNLHIQGVNVNSVIQLSLVKNNPALSLSAQTIS
                     TESTLKGIDLSVTFTPKTSGFVHDTLLIQGGGLTESLKIPIKALASADFITVEPKDVT
                     PVGGTLQWISDPLATGYRLNVYQGDQKAGDLIISTYVEGSSWNKAIELYNGTGKTVDL
                     SNYSLQKQSNGAGYFGSSLKLARTLATGKSYVIVHKSAIADMQSKADLLTDSLLQFNG
                     NDAVSLVRSGVTIDMVGKANAGADVNWGLDVTLQRKSNITHPASVFNQDEWTTLPLDS
                     YALLGAHNMTFASVTNYILQNVFTGINTSYNISNLLPENTYTYSIESMRSGVIAPAIN
                     TMQLRTLALDVPEISDANDIQPTQFTANWGESPFASGYLLDVFKIAGQADTTEVEGFA
                     NVVSSGTPLPTGWTGTASGNYTSTTSSGIAIPSLALKNKGEWVRTKTYANPVSRLTFM
                     YRFASASSGSSVLLDAQSNGTWIRIDSIPYSSSTSKTYPVYNFTRDKAINSFRITYNK
                     VGSGNLALDDVSATYGNQDTIYVAKNYPVSVNHAVISNLAENTRYYYAVRATLGSAVS
                     GTSEIISALTLTNTKVIAQNATNIRILSEKYQVVITGLRGDEFVQVYSLTGVSIYQAK
                     ANSAIMNIPVKHSGIFIVRVQGRDYSFTGKLIK"
     gene            complement(5388..7433)
                     /locus_tag="VI413_00235"
     CDS             complement(5388..7433)
                     /locus_tag="VI413_00235"
                     /inference="COORDINATES: protein motif:HMM:NF016146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HEY6913076.1"
                     /translation="MKKQFTLFLLFLSINIWATAPAGYYNSADGKNTAALRSALQSII
                     TNGHSVTSYSGLWTAYSTTDRNSSGKIWDIYSNCTFTYSTNQCGTYSSECDCYNREHT
                     TPQSWFSEASPMVSDLFNVYPSDGKVNGMRSNYPYGEVGSVTYTSGNGSKLGSSNFSG
                     YSGTVFEPINEFKGDLARTYFYMATRYASVCESWSSGAEVVYGSNLGFTPYAMNLFLK
                     WSRQDPVSAKEIARNDAAYGVQNNRNPFIDYPGMEEYIWGNKTSSNFSITGTPVPALT
                     SPSNSSLVDFGKVAFQQTDTVTVFIKGTNLTGDMVVALSGTNSSYFSLPVSTISVANA
                     QAGYKLVVNYTAQVLGTHTATLTISGGGITNTTVTLNATSTDSFLALPATNVTGNGFT
                     ANWSSSANASGYLLNVYSYTGNTAAVPQTLLEEDFTAATLPTGWTSSGYIDYTLTSNI
                     KLASGSQIGKITTPVINMSVPTTLVVRAKQYGTDAGAKLTVKVNADSITTFVTGTTNQ
                     DFTVNIPVKTSTSSVSLSALAGSGNRVYVDYVKVSTQGTILTPVSVSGYPKQVGNVLN
                     SEVTELLGDSLYYYTVTPQGNSAIVSEPIRVRTSLLNSVLENQFNNLLCRKIIGEGIQ
                     VLNIPQGCKVSVLDLMGKQLKAFNNSSSELTFKLSQKGLYLLQIQQNETLRTFKVVY"
BASE COUNT         2389 a         1628 c         1455 g         2323 t
ORIGIN      
        1 tggttatcgc tcctttggcc ggtattattc caagtgcagc tacagctcct gcattaatca
       61 ttgtaggtgt attaatggcc tcatcggtgt tagatataga ttttaatgat tttactgaag
      121 gtttccctgc ctttatgact tttataatga tgccgtttac atacagtatt gccaatggta
      181 ttgccgcagg tattatttca tacacaattc ttaaagttgc aactggtaaa tggaaacagg
      241 tacactggat gatgtatatc ttatttgtgc tggttattac ccgctatatt ttcctcagtg
      301 aataataaga atttatattt ttaagaccaa attaaatgcc cgttctgtac aactacatga
      361 cgggcattta tgtactattt tatgtgtcgt aattattaca gcgcattaca ttttactaaa
      421 aaacagatca aatcgtttaa atatttaatg taaaacccta ttttcattga tattttaata
      481 caataattga aataaataat taattttgtc aaatcaatgc taatcacatc gtgtcaaatc
      541 aaatcgttaa attatatttt tattaaaact gttactttat agttgaatct tttacacaaa
      601 ccagaatttg taaaaactat taagatacta actttttaaa ctatccgtta tgaaaagact
      661 attactcatc ttaagctttg tactttcatt gtctaatttt gcagttcatg cgcaaaattt
      721 attagccaac cccagttttg aaacatggac tactggaaat caggctatta caaactgggt
      781 aattactaca cctgcaaatg gaactgttgc cctagacaca acccatactg atgggacaaa
      841 atcttgtaaa atgtttgcgt ccggaactta ccacgagata taccaatatg caactgtaac
      901 tccaggcaaa acttatacgt taagcctttc atattatatt tatgggggtg atgcaaccga
      961 tgccggaatt tggtgtaatt tcaagacagc ggcaaatggc tcaaatatag tattatcttt
     1021 ggctgattca ttgttattaa aaggccctgg tggtgcaact aagttttttg ctaatgtaaa
     1081 aaactcatgg caaacctaca cctgcaatgt tgtagctcct gccggaagta cgattttcag
     1141 atttggaata cgaacttaca aagccggcac tgtatcttgg gataaatgtt cattcactga
     1201 aaatcttact ccggttatca acaagtctgt ttcatcttta tcagggttca actatgtacc
     1261 cggagcaggt ccatcggctc aacaatcgtt tacaataagc ggaagcaacc tcaccaacag
     1321 tatgactgta acagctcctg caaattatga gctatcaaca aactcaggtg cagcctttac
     1381 tgcattggct aatccattta caattacgcc gtcaggtgga gtagttagcc cggttacctt
     1441 gtacgctaga ttaaaaaccg gactgacggc aaatacttat acaggaaaca tcaacttaac
     1501 ttcgggaagc cttgcccaga ctatagcatt gactggaaca gtggctgcac ctccggtaac
     1561 aattacaaca tctacaactg ctttatcagg atttacgtat gtagaaggaa gcggtccatc
     1621 tactcaacaa tcgtttacgc tgagtggcag caatttaacc agcggaatag ttgtgacgcc
     1681 tccaacttct aattatgaaa tttcaataag ctcaggcaca gcctttagtc cattaactac
     1741 tccgtttaca attagccaat ccggagggtc tatagcaaca acaacgattt atgtacgctt
     1801 aaaatccgga gtagttgcag gaaactatac cggcagcata acactatcaa caacaggcgc
     1861 aacaaaaact attgctttat ccggaacagt gacagttcct gcagggattt cattatcggc
     1921 atcttcttta acaagtttca gttatgccgt tggcggaggt ccatctactg ttaaatcatt
     1981 taatgtgagt ggaatcagcc tgacttcttc agttgtaata actccacctg caaattttga
     2041 aatatcagat accgcaagcc ctttcacggc aactggtttg atcctgcttg taccatcaaa
     2101 tggtaatgtt gcttcaacgc caatttatgt ccgtttaaag tctgggttgc ctgtgagcgc
     2161 ttataacgag agtgtaagtg tatcttcaac cggatttaca gccaaaacag tatctttaag
     2221 tgggaatgtt ttgcttacca caggaactcc tgaaacttct gcgaatagtt taagcgttta
     2281 cacctcgggg gctaatattg tcataacagg tacagaaaaa gatgaaatgg tttcactcta
     2341 ttcaattacc ggaatgcgtt tgcaaacagt taaatcgcaa ggagaacgta ttgaaatagc
     2401 tgctcaaccg ggtgcaattt atctggttaa aactgcaaca aaggccttta aaataatctt
     2461 ataaaaagga acttcttata aataaaaaat ccgctgagag tttttctcag cggatttttt
     2521 atttatagat agcactgtga tttatttgat gagttttccc gtaaagctat aatccctccc
     2581 ttgtactctt actatgaata ttcctgagtg tttaacaggg atattcataa ttgcagaatt
     2641 cgctttggct tgataaatag aaacccctgt aagcgaataa acctgtacaa attcatcgcc
     2701 gcgtaacccg gtaataacca cctgatactt ctctgacaaa attcttatat ttgttgcgtt
     2761 ttgagcaatt acttttgtat ttgtgagcgt aagtgcagag ataatctcag atgtccctga
     2821 aacagccgat cccaatgtgg cacgaactgc ataataatac cgcgtatttt cagccagatt
     2881 ggaaatgaca gcatggttaa cggaaaccgg ataattcttt gctacgtaaa tggtatcctg
     2941 gtttccatac gtagccgata catcgtcaag tgcaaggttt ccggaaccta ccttgttgta
     3001 tgttattctg aatgaattaa tggctttatc tctagtgaaa ttataaacag ggtaagtttt
     3061 tgaggtagaa ctactatacg gaatgctgtc aatgcgaatc caggtaccat tgctttgagc
     3121 atcaagcaac acagaagaac cggagctggc agaagcaaaa cggtacataa atgtgagtcg
     3181 ggaaactgga ttagcgtacg tttttgttcg aacccactct cctttgtttt tcagcgctaa
     3241 tgacgggatg gcaattccgg aacttgttgt gctggtatag tttccacttg ctgtccctgt
     3301 ccatccggtt ggaagcggtg tccccgaaga aaccacattt gcaaaacctt caacctccgt
     3361 tgtatctgcc tgccccgcaa ttttgaaaac atccagcaaa taacccgaag caaatggaga
     3421 ttctccccaa ttggctgtaa attgagtcgg ctgaatatca tttgcgtctg agatttcagg
     3481 aacgtccaat gccaaagtac gcagttgcat ggtgttgata gccggtgcga taacacctga
     3541 gcgcattgat tcaatactgt aagtatacgt attttcgggc aacaaatttg aaatattata
     3601 ggatgtattt attcctgtaa acacattttg taaaatataa ttcgttactg atgcaaaagt
     3661 catattatga gctccaagca gggcataaga atcaagaggc aaagttgtcc attcatcctg
     3721 attaaaaaca gatgccggat gtgtaatgtt tgatttacgc tgcaaggtaa catccaaacc
     3781 ccagtttaca tctgctccgg cattggcctt tccaaccatg tcaatagtga ctccgcttcg
     3841 caccaaagat acagcatcgt ttccattaaa ctgaagcaga gaatcagtca acaaatcagc
     3901 tttggactgc atatctgcaa tcgctgattt atgaacaatc acgtaactct ttccggtagc
     3961 caatgttctg gcaagtttca atgaagaccc aaaataacca gctccgtttg attgcttttg
     4021 aagagaataa tttgataaat caactgtttt tcctgttccg ttgtacaact cgatagcttt
     4081 gttccagcta ctgccttcaa cataagtgga aataattaag tcaccggcct tctgatcgcc
     4141 ctgataaaca ttcaggcgat aaccggtagc caatgggtcg gaaatccatt gcagtgttcc
     4201 accaacaggc gtaacatctt tcggctcaac tgtaataaaa tcagccgaag ccaatgcctt
     4261 tatcggaatt ttcaacgact cagtcaaacc tccgccctga ataagtaatg tatcgtgcac
     4321 aaaacccgaa gtcttcggtg taaaagtaac agataaatcg atgcccttca gggtactttc
     4381 tgtagaaata gtttgcgcgg ataatgaaag tgccggattg ttttttacca atgacagttg
     4441 tattaccgaa tttacattca ctccctgaat atgcaaattc tgagtgcgcg tatcattttg
     4501 caaaatcacc ccaaaatcga tagaagctcc tcgccgcgga gtaaccagaa atggctctgt
     4561 ttcttccgga aaaggaaaaa tagttgcagt atcttttccc cagatatatt ccaccaggtc
     4621 gggataatca ataaacggat tgcggttgcc ctgaatgctg taaatcgctt cgatacgttt
     4681 gcgttcctta tcactcaccg gatcctgcct gtgccatttg agcaatagat ccagcgccca
     4741 tggcttccag aatggatatg tattgtttgt aaaagtcatt ggcgactgca tcagtggtgc
     4801 cagattttca taaatagtgg aaatgtaaaa gtaggaacgt gcaaagtcac ctttatattc
     4861 atccgccggc tcaaaacaac catcgacata agcagtttca aaaccatttt taccgacttt
     4921 ggtcacccca ttgtcaaatg ttggcgtacc tgcaacttca ccaagcggta aattattttt
     4981 tgtttcattt gccaacgcat cagccggata gagatgaaac aaatctttat atgcattatt
     5041 aggataggcg ccccaccagc ttttcgggaa agaatgctca atatgcatac ccgaaacggc
     5101 actaaaactg gtttgttttc tcaccgtatt ggaatacatg tcaatgacgg tagaatctgc
     5161 ccggcggtcg gtagagaaaa atccctccca ggtaaatcct gccccaccac cataatccaa
     5221 ttctgccatt gggctacaat aagtatgaag agccgtttta agcgctgcct gctttttgtt
     5281 ttttacaaag taataataac ccgaaggtac agttgcaaaa acagcggcaa aggcaaaaac
     5341 tgatattccc aagagcaaca ggaatttaaa acgacggttt agcataatca ataaacaact
     5401 ttaaacgtgc gcaatgtttc attctgctga atctgcaaca agtacaatcc cttttggctc
     5461 agtttaaatg tcagctccga agaagaatta ttgaacgctt tcaattgttt tcccattagg
     5521 tccaaaacag aaaccttgca tccctgaggg atattcaaca cttgaatacc ttcaccgatt
     5581 attttacgac acagcagatt gttgaattgg ttttcaagaa ccgaatttaa aagcgaggta
     5641 cgcactctaa tcggctcaga aacaattgca ctgtttcctt gtggagttac ggtgtaataa
     5701 taaagagaat cacccaacag ttccgtaacc tcagaattca atacatttcc aacctgtttt
     5761 ggataacccg aaactgaaac cggtgtaaga atggtgcctt gagtggagac tttcacataa
     5821 tcaacataca ccctgtttcc tgagccggcc aaagccgata atgaaacaga tgaagtactt
     5881 gttttgacag gaatattcac tgtgaaatcc tggtttgtag ttccggtaac aaatgttgta
     5941 atagaatcgg catttacttt tacagtaagt tttgcacccg catcggtacc atattgtttt
     6001 gctctgacca ccaacgttgt tggaacagac atattaataa ccggcgttgt aatcttacca
     6061 atctgactac ctgaagccag cttgatatta cttgtcagtg tataatcaat atacccggaa
     6121 cttgtccatc ccgttggaag cgttgcagcg gtaaaatctt cttccaataa agtttgtggt
     6181 acagcagccg tattacctgt gtaagaatat acattcaata aataaccact tgcattagct
     6241 gagcttgacc aattggcagt aaagccgttt cctgtaacat tagttgccgg taatgccaga
     6301 aatgaatctg tggaagtcgc gttcagcgtc actgttgtat tcgtaattcc tccacctgaa
     6361 atagtcagtg tagctgtatg cgtccctagc acctgtgcgg tataattcac aaccaactta
     6421 taacctgcct gtgcattggc aactgatatc gttgaaacag gaagtgagaa ataagaggaa
     6481 tttgttccgc ttaatgcaac aaccatatct ccggtaagat tagtaccttt tatgaatact
     6541 gtaactgtat cggtttgttg aaatgcaact ttaccaaaat caaccaatga cgaatttgaa
     6601 ggtgaagtta aagcaggaac aggtgttccg gttattgaga aatttgacga cgttttattg
     6661 ccccagatat actcttccat acccggataa tcaataaacg gattccggtt attttgcaca
     6721 ccataagcag catcattacg ggcaatctct ttggcactta caggatcctg acggctccat
     6781 ttcaggaata aattcatagc ataaggtgta aatccaaggt ttgaaccata cactacttca
     6841 gctccactgc tccagctttc gcacacactg gcatagcgcg tagccatata aaaataagtt
     6901 ctggccaaat cacctttaaa ttcatttatc ggttcgaaaa cagtacctga atatcccgag
     6961 aagtttgaag aaccgagctt gcttccattg cccgaagtat aagttactga accaacttct
     7021 ccataaggat aattgcttcg catgccgttc acttttccat cgctagggta cacattaaaa
     7081 aggtcgctaa ccatgggcga agcttcactg aaccaactct gcggcgtagt atgttctcgg
     7141 ttatagcagt cgcattccga tgaatacgtt ccgcactgat tagttgaata agtaaatgta
     7201 caatttgaat aaatgtccca gattttaccc gatgagttcc ggtcggtagt ggagtatgca
     7261 gtccacaaac cagagtaaga tgttacacta tgcccgttag ttattataga ctgaagagca
     7321 gaacgcaaag ctgcagtgtt ttttccatcg gcagaattat aataaccagc cggcgctgtc
     7381 gcccaaatat tgattgacaa aaataataaa aaaagagtaa attgtttctt cataaaaagt
     7441 catcaaaaat tagatataaa atccccattt tgagggaaaa gagggctgca aatgtaggga
     7501 atatgttttg aataatcata cctttttaca gttttattca gttcatgcat aaaaatacgg
     7561 ttcatttgtt ttcctacttc cttttctgaa tcgtgttatg acatttatgt aacaaattca
     7621 atataagtca ctcattttaa attttttaca gacaaacaca ttgtaccatc caactgcaaa
     7681 ataacattta ataagctatg tgtatataaa tatacacatt ttcaattaaa atcaaacaat
     7741 tacttataaa ttgttatatc tttgccttga tgtaagcata atacattcgc ctgaa
//
LOCUS       DATDNM010000012         2163 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1870, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000012 DATDNM010000000
VERSION     DATDNM010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1870"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1185
                     /locus_tag="VI413_00240"
     CDS             <1..1185
                     /locus_tag="VI413_00240"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 16 glycoside hydrolase"
                     /protein_id="HEY6913077.1"
                     /translation="SLKIGEQWNQRTDYGNGFKEYEVLPTTSWNYALVLDKSNPESSI
                     VVNKAATMPANPFVQATTPVTLTVNAKKLPAWGYSFNGIIACDPPYSPVETTQATEQI
                     TMVPFGAENIRATCLPVTGTPSLNSSQFQDNFSNGNQLGWVNYNGSFMVDNGEYFSTN
                     IEGGNKGAKSVQSSTLFSDFTYDVKVQVGTSGDGGVMFRASKVSMGADEYNGYYVGIS
                     ASGQNVVLGKGNGGWTSLRTAAMAISANTWYQLRVVAQGTTIKVYVNDMTTPKITYTD
                     ASFATGAVGVRCYNAITRWDNISVTSSLVSAVKDLKTTENIKVYPNPAKNFLEVSFNE
                     RLNNDFSIHILSINGSLIQTKKRSKDVAMVYFDTQNMAKGTYLVNISSDNESYQSRFI
                     KE"
     gene            1303..>2163
                     /locus_tag="VI413_00245"
     CDS             1303..>2163
                     /locus_tag="VI413_00245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913078.1"
                     /translation="MLDKKIIGLTFLLLQSFSLFSTAQTTWPVGQLLPSFPAPASTQD
                     LIYLNGSVAPYAKSWRWQAEDTTITHNTGHLETDGWLCKVGVDAGNQYMISGPNDRNV
                     TAGPNVAEFRMMIDNNSINNDPVADIDVRNASTGAILATQTITRQQFTAINSYISFKV
                     PFQMPADSQAIELRVYWRGAAYTKVDWVGVTQNNADAELYLFSSLKGIVNLTQPRIFA
                     YDGDAFAEGPYTWLQSLGLKWLEQSSNWVLISKYRKEISGLIVYDPAQIHTVNLATML
                     AKDKKALIASP"
BASE COUNT          660 a          450 c          489 g          564 t
ORIGIN      
        1 tcactcaaaa tcggggaaca atggaaccaa cgtaccgatt atggaaatgg ctttaaagaa
       61 tacgaagtgt tgccaacaac aagctggaat tatgcccttg tactcgataa gagcaacccg
      121 gaatcatcta tcgtggtaaa caaagccgca accatgcctg ccaatccgtt tgttcaggct
      181 accacacctg tgacgctgac tgtgaatgcc aaaaaacttc cggcatgggg ctattcattt
      241 aatggcataa tagcctgcga tccaccttac agccccgtag aaacaacaca ggctaccgaa
      301 cagattacca tggtgccttt tggagccgaa aatatacgtg ccacctgttt gcctgtaaca
      361 ggaacaccgt cgttgaacag ttcgcagttc caggataatt tctctaacgg aaaccaactt
      421 ggctgggtga attacaacgg cagctttatg gtggataacg gcgaatattt ttctacaaac
      481 atcgagggtg gaaacaaagg tgctaaatcc gttcaaagtt caactttatt ctccgatttc
      541 acatacgacg tcaaagtaca ggttggtaca agcggcgacg gcggggttat gttccgtgca
      601 agcaaagtat ctatgggagc tgacgaatat aatggctatt atgtaggaat aagcgccagc
      661 ggacaaaacg tagtgcttgg aaaaggtaat ggtggatgga cttcattgag aaccgccgcc
      721 atggctattt cagccaatac ctggtatcag ttacgggtag tagcgcaggg aacaactatc
      781 aaggtgtatg tcaacgatat gacgactcct aaaatcactt acaccgacgc ttcatttgca
      841 accggcgctg tgggtgtacg atgctataat gccattaccc gctgggataa tatctcggta
      901 acaagttcgc ttgtcagtgc ggtgaaggac ttgaaaacga cagagaatat aaaggtttac
      961 cctaatccgg caaagaattt tctggaagtc tcgtttaatg agcgtttaaa taatgatttc
     1021 agcattcaca tcctgagtat aaacggaagc ctgatccaaa ccaaaaagcg gagcaaagat
     1081 gtagcaatgg tgtattttga tacccaaaac atggcaaaag gaacttattt agtaaatata
     1141 agttccgaca atgaatcgta ccagtcgaga tttataaaag aataattaat ctgcacagaa
     1201 agcctttaga ctttgctttc ggaggctttt tggcattttg atttattcaa cgtgtataga
     1261 aaagaaatta tttgtgattg aaatttatta tagaaaaata aaatgttaga taaaaaaata
     1321 attggtttga cctttctttt gctgcagtcg ttcagtctgt ttagcactgc tcaaacaaca
     1381 tggcccgtcg ggcagcttct tccttcgttt ccggcaccgg cgtcaaccca ggatttaatc
     1441 tatctgaacg gttcggttgc tccttatgca aaatcatggc gttggcaggc agaagacacg
     1501 actattaccc acaacaccgg gcatctggaa actgatggct ggctatgcaa ggttggagtg
     1561 gatgcgggca accagtatat gatttccggt ccgaatgata gaaatgtaac agcgggccct
     1621 aatgttgccg aatttaggat gatgattgat aataattcaa tcaataacga tccggtagca
     1681 gatatagacg taagaaatgc aagtacaggt gccattcttg ccactcagac aattacacgc
     1741 cagcagttta cggctataaa cagttatata agctttaagg tccctttcca gatgccggcc
     1801 gatagccagg ctattgaatt gcgcgtatat tggcggggtg cagcttatac caaagtagat
     1861 tgggtgggtg taacgcaaaa taatgccgat gccgaattat acttattttc ttcgttgaaa
     1921 ggtattgtaa atctgactca accgagaatt tttgcatatg acggtgatgc atttgctgaa
     1981 ggtccgtaca cctggttaca atcattaggc ctgaaatggc tcgaacaatc gagcaactgg
     2041 gtgctgatca gcaaataccg caaagaaatt tcaggtttga ttgtttacga tccggcacaa
     2101 atacacacgg tgaacctggc aactatgctt gccaaagaca aaaaagcact cattgcctct
     2161 cca
//
LOCUS       DATDNM010000013         2021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_322533, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000013 DATDNM010000000
VERSION     DATDNM010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322533"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1921
                     /locus_tag="VI413_00250"
     CDS             <1..1921
                     /locus_tag="VI413_00250"
                     /inference="COORDINATES: protein motif:HMM:NF012551.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="endo-1,4-beta-xylanase"
                     /protein_id="HEY6913079.1"
                     /translation="RVIREVTRYKGRVKEYDVINEPTHATTLQSIVGDSINWNCFKWA
                     HEADPTAQLFINDYNVIEYQDQTNNYINLIKKILQNGGPISGIGAQCHIGENVDLVNF
                     KSRFDQLAQFGIPVKVTEFDMNATNASQAKYAAEVGKMMRLCFSHPGIQGYIFWGFTE
                     PTWAKGIVNVVREDKTMKIAADTIYQLIHKTWSTNLKGATNNTGDYTFKGYYGDYEIQ
                     AKLNGVWKKFDVSCTKDKRNSTITVIDSTAAAIPPKLLKVKTIAGKGVELTFDKPMTL
                     PYADRGNFKVFESSSNYVSSALLKTGDSTTIVLTMSAPANIKERAYLPVAYFPGNVKS
                     QDGGKLEFFGPVWDASVTPSYLSSKTSADGTIVNVIFDKKLKPATVNKSNFSVRKNST
                     GIIISEATLSATQDTVKLKLATQVTDTADVVSLSYTAGDLRTIDSVYVASVFNKSVTN
                     ALSVAKVSSVYTSSDGKTIYADFNSNIADPTGFESNFSLTINTKLTPITSVKLSPSNK
                     RRLLITYDGSVFLKDSIKFALIKKGSFLSAIGVPVPLFSSKVLNKSVISAIIDVDDSS
                     IKLCPNPFNDQIRLTGLADFTTVNVYNSVGVKVHSQVNSHETLEMNTSDLKQGLYFIE
                     MIGKTKRKIVKAIKQ"
BASE COUNT          666 a          355 c          394 g          606 t
ORIGIN      
        1 tcgtgtgata cgtgaggtaa cccgctataa aggccgggtt aaggaatatg atgttatcaa
       61 tgaacctact catgccacta cattgcaaag tattgtgggc gattctatta actggaattg
      121 ttttaaatgg gcacatgaag cagaccccac ggctcagttg tttataaatg attataatgt
      181 tattgaatac caggaccaaa ccaataacta cataaacctg attaaaaaga tcttacaaaa
      241 cggtggaccg atttccggta ttggtgcaca atgtcatatt ggcgaaaatg tagatttggt
      301 taactttaaa tctcgttttg atcaactcgc tcaatttgga attccagtta aagttactga
      361 attcgacatg aatgccacaa acgcttcaca ggcaaagtat gccgccgaag taggtaagat
      421 gatgcgtttg tgcttttcgc acccgggtat tcaggggtat atattctggg gatttactga
      481 acctacctgg gctaaaggta tcgtgaacgt tgtaagggaa gacaaaacaa tgaaaattgc
      541 tgctgataca atttatcaac ttattcacaa aacctggtcg acaaatttaa aaggagcaac
      601 caataatacc ggcgattata cctttaaagg ttattatggc gattacgaaa ttcaggcaaa
      661 attaaatggt gtctggaaaa agtttgacgt ttcatgtaca aaagacaaaa gaaatagcac
      721 cataacagtt atagattcaa cagcagcagc cattccaccc aaactactca aggtgaaaac
      781 tattgccggg aaaggagttg agctcacttt tgataagcca atgacactac cctatgcaga
      841 tagaggaaac ttcaaagttt ttgagtcaag ttcaaattat gtaagttcgg cgttgctaaa
      901 aacaggtgat tctacaacga ttgttctgac tatgagtgct ccggccaaca ttaaagaacg
      961 agcatatttg ccggttgctt actttccggg aaatgtaaaa tcgcaagatg gaggtaaatt
     1021 ggaattcttt ggcccggttt gggatgcttc tgttacaccg tcatatcttt cgtctaaaac
     1081 aagcgctgat ggaactattg taaatgtgat attcgacaaa aaattaaaac cagccactgt
     1141 aaataagtcc aacttttctg ttcgcaaaaa tagtactgga atcataattt cagaagcaac
     1201 cttaagtgct acccaggata ccgtaaaact taaattagct acgcaagtaa ctgatactgc
     1261 tgatgtagtg tcgctttcgt atacagcggg tgatttaaga acaatcgata gcgtatatgt
     1321 tgccagtgtg tttaataaat ctgttaccaa tgcactttct gttgcaaaag tttcgtctgt
     1381 ttatacttcg tcggatggaa aaactattta tgctgatttt aattcaaata tagctgaccc
     1441 aactggtttt gagtctaatt tttcattgac cattaataca aagttgacac ctattacttc
     1501 tgtaaaactg tcgccttcca ataagagaag gctgcttatt acatacgatg gatcggtttt
     1561 cctaaaagat tccattaagt ttgcactaat taagaaagga tcattcttgt cagcaatagg
     1621 tgtgccggta ccattattta gtagtaaagt gctgaataag agcgtaattt ctgccattat
     1681 agatgtagat gatagtagta ttaagttatg ccccaatcca tttaatgatc agattcgact
     1741 tacaggttta gccgacttta caacagtaaa tgtctacaat tcagttggag ttaaggtcca
     1801 ttctcaggta aatagccatg aaacgctgga gatgaatact tctgacttga aacaaggcct
     1861 ttattttatc gaaatgattg gaaaaactaa acgcaagata gttaaggcaa tcaaacaata
     1921 agtttaattg ttattcgaga aaataataga actacgaccc agattccaca ctaatggaat
     1981 ttgggtctgt ttttaaaatg tttatttttt caaagatata t
//
LOCUS       DATDNM010000014         6832 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2837, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000014 DATDNM010000000
VERSION     DATDNM010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6832
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2837"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..440)
                     /locus_tag="VI413_00255"
     CDS             complement(<1..440)
                     /locus_tag="VI413_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEY6913080.1"
                     /translation="MANKQLHIQPKEIDLQISLPASKSISNRALILNALAYSPYDIQN
                     LSDCDDTRVTVKALDSNDTTFDIGAAGTAMRFLTAFLAKTVGEWVITGSERMKNRPIK
                     LLVDALTNLGARIEYVEKEGYPPLRIFGSAMMGGEISLNGGVSS"
     gene            636..1817
                     /locus_tag="VI413_00260"
                     /pseudo
     CDS             636..1817
                     /locus_tag="VI413_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009126494.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
     gene            complement(1932..3098)
                     /locus_tag="VI413_00265"
     CDS             complement(1932..3098)
                     /locus_tag="VI413_00265"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002561404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018455 - alcohol dehydrogenase [NAD(P)+]
                     activity [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEY6913081.1"
                     /translation="MNNFNFYSPTFFVFGKERENEAGKYVKRFGGSNVLIHFGGGSVI
                     KSGLLDRVKASLTAENITFSELGGAQPNPRSGLVYEGVEICKRDKIDFVLAVGGGSVI
                     DSAKAIALGALYDGDFWEFYQGKRVEKALPVATILTISAAGSEGSTGSVITHENGMLK
                     RAANSDALRPIFSILNPELTCTLPNYQTACGAADMMAHVMERYFTNTQNVEITDRLCE
                     AILLTVIKETPKALADPSDYESRANIMWAGMVAHNDICGVGREQDWSTHQIEHELSAL
                     YDVAHGAGLAVMFPAWMKYVMNQDVMRFAQFAVRVWGCEMDFQHPEKTALQGIERYEQ
                     FMISIGMPIRFSELGAKAEDIPTLVKTAGLGENTMGSFVKLTEEDIRKIYELAV"
     gene            complement(3164..3616)
                     /locus_tag="VI413_00270"
     CDS             complement(3164..3616)
                     /locus_tag="VI413_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913082.1"
                     /translation="MKSITKTTVTLLFTTLFLFSCSGKFEKVSEDKFIGIWELKGTSI
                     MDGTQIQIQKENNKLVGRIIKLNNNKYVKLFADSNEVWISEISRNSNFEFKLTESKLG
                     KDLFSLYGQKTNQEYKAQFIDENTIGLATENSDPRTSTRIYKRVSAKL"
     gene            complement(3677..5584)
                     /locus_tag="VI413_00275"
     CDS             complement(3677..5584)
                     /locus_tag="VI413_00275"
                     /inference="COORDINATES: protein motif:HMM:NF027638.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4954 family protein"
                     /protein_id="HEY6913083.1"
                     /translation="MATYRQLLDKEIATLTVYGCSAENWKEVQVTEDFSPNFISNTHF
                     SGKVCLGTYQKVFELAGGIKKHAGIYNSVLHNCVIENDVFIDKIHNYIANYTIAEGAY
                     IENVNLLVVDGISAFGNGIKVATMIESGGREVPIFDQLSAPLAYMMAFYRHNTSLIEK
                     LEKQVEVYIEKQRSDMGRIGANARIVNCGTLKNVRIGDFARLEGVILLENGTIVSNDL
                     APVIIGAGVQCNDFIIQSGTSVTDAAMISRSFVGQGCLIGKQFSAIDSLFFANCQGLH
                     GEAVSIFAGPYTVSHHKSTLMLTALYSFMNAGSGTNFSNHMYKLGPVHQGITERGVKT
                     SSDSYLMWPAKIGAFTVVLGRHKGNPDISNLPFSYLIENDGESNLLPGINLHSAGTIR
                     DVQKWPKRDLRKGDKIDPVCFDFLSPYTISKVLKGIEILQSLLQNMDEKTNFVWYQNC
                     KIKRSAIRKGIELYELAVDNFLAKTITGKLNGKTIDSDKDVVSGTDCWVDMAGLIAPK
                     SEIDKLVARIVSQDISVEYIQQELNVIFEKYPEFSLNFALNVLCARKGKSLAEIDEKD
                     IADILEKGKKAEMTFNDLILRDAKKEFNSVSKTGFGIDGDDAEKDADFEATRGTFDNH
                     PFVIERMAPNP"
     gene            complement(5604..6809)
                     /gene="hflX"
                     /locus_tag="VI413_00280"
     CDS             complement(5604..6809)
                     /gene="hflX"
                     /locus_tag="VI413_00280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009317979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEY6913084.1"
                     /translation="MKTEIYEEKAVLVGVITQVQSEEKAREYLDELAFLAETAGASPE
                     KLFFQRLDFPNPKTYVGPGKLIEIKNFVDENEIGVVIFDDELSPKQLRNIEAELKVLI
                     LDRTTLILDIFAKRAQTASAKTQVELAQCQYMLPRLTRLWTHLERQKGGIGMRGPGET
                     QIETDRRIILTKISLLKQNLKDIDQQMTTQRKNRGKMVRVALVGYTNVGKSTLMNLIS
                     KSDIFAENKLFATLDTTVRKVIIENLPFLLSDTVGFIRKLPHHLVQSFKSTLDEVREA
                     DLLVHVVDVSHPNFEEQLEVVNQTLKEIDPQEKPMILVFNKIDAFTYTPKDEDDLAPV
                     KRENISLDELKKTWMAKMHDNCIFISAREKQNIDTLKELMYEKIKAIHIERYPYNDFL
                     FQRYTEIED"
BASE COUNT         1968 a         1532 c         1219 g         2113 t
ORIGIN      
        1 tggctgctta caccaccatt caaacttatt tcacctccca tcatggcact tccaaaaatc
       61 cgcaaaggtg gatagccttc tttttcaaca tactcaattc gtgcacccaa gttggttagc
      121 gcatccacca acaatttaat cggacggttc ttcatccgtt cgctgccggt tatcacccac
      181 tcacctactg ttttcgccaa aaatgctgtt agaaaacgca tagcagttcc ggcagctcca
      241 atatcaaaag tcgtgtcatt cgaatccaat gcttttaccg ttacgcgcgt atcgtcacag
      301 tccgaaagat tttgaatatc atatggactg tatgccaatg cattcaaaat caaagcacgg
      361 ttactgatac ttttggaagc cggaagagat atttgcagat ctatttcttt tggttggata
      421 tggagctgtt tatttgccat tttaaaaatc tataatttcg aaatttattt taatactgcg
      481 aagatacttt ttcggtaaac ttacgttata cacaaagaaa aacgacacaa aagtacatat
      541 ttttctacag ttaagaataa taaacttgat ttttacaaga ctatataccg atcaaaaaaa
      601 tatatctttg cgatatacaa aagatttttg aagacatgaa cagaatactt tttttccttg
      661 caattctaag tttcacttgc aatattgcaa tagcacaacc tttacccaaa gttacgccag
      721 aggaagtcgg acttgataca cataaattgc aaaaagctga tagtgctatt ctgttggcta
      781 tcaatagcaa atcaatacct ggcgctgtgc tggctgttgt acgcaatggg aaaatggctt
      841 acctgaaagc atatggcaat aagcaggtat atcccactgt tgtgcccatg gatgtgaata
      901 cggttttcga catggcttca tgtaccaaac caatggcaac agctatttcc gcaatgatac
      961 tgtatgacag ggggttgcta cgtttacagg atgatgtaaa catgtacatt cccggtttta
     1021 tttatatgat tgaacccaac agaaaaacaa atatacggat aacaaatttg ttgacgcata
     1081 cttccgggct accttcttat gcgccggaaa caactatcaa aaaacgttac ggttcaaaca
     1141 accccactgg atttatgcaa tatatcgatt cgtgcaaaag aaactttgaa ccgggcagaa
     1201 gcatggaata cagttgttta aacttcatta cattacagca tgttattgaa aatatcagcg
     1261 gggaaagcct gaggaatttt gccaaggaaa atattttcga tgtgcttggt atggctcaca
     1321 ccgactttaa tcccaccgga gaaatactcg aatgctgtgc accaacttca aagctcaaaa
     1381 acggaactgt aatgaaaggc attgttcacg accctttggc ccgcgagttc aatgaaggta
     1441 tttcgggcaa tgcaggcttg ttttccgatg ccaatgacat tgcgatactg gctgcagctt
     1501 tgcaaaatgg tggagaattg aacggcaacc ggattttaag tccaatgaca gtgaaagaaa
     1561 tgcgttcggt acccgattcg cttaaggctt ttgggcggac gcttggttgg gacatgtcat
     1621 cacactacgc aagctgtaaa ggcgactcgc taggaccaaa tacttattgc cacacaggct
     1681 ataccggaac ttcaatagtt attgaccctg acaacgacat ctccatcatc ctgcttacta
     1741 atcgggtaca tccttttgat aaaggcagcg tggtgaaact gcgtgcaaca gttgccaacg
     1801 cggtggcagc ttcaattaaa aaagtgactc cctaccttag caacaaataa aaaagtgttt
     1861 tgcttattat aattgagtat aaatcggcaa aacacttttt ctctattcta aattgattat
     1921 ttatatctat tttaaaccgc taactcataa atcttccgga tatcctcttc ggtcagtttc
     1981 acaaagcttc ccatcgtatt ttcgcctaat ccggcagttt ttaccaatgt tggaatatct
     2041 tcggctttcg cgccgagttc agagaaacga atcggcattc cgatagatat cataaattgt
     2101 tcgtaccgtt caatgccctg caaagccgtt ttctctggat gctggaaatc catttcgcaa
     2161 ccccagacac gaacagcaaa ctgtgcaaaa cgcattacgt cctgattcat tacatatttc
     2221 atccaggccg gaaacataac ggccaaccct gctccatgag ccacatcgta caaagctgaa
     2281 agttcatgtt caatctggtg cgtagaccaa tcctgctccc gccctacgcc gcaaatatcg
     2341 ttatgggcaa ccataccagc ccacataata ttggcacgtg attcataatc agacggatca
     2401 gccaatgcct taggcgtttc tttaattacc gtgagtaaaa tagcttcgca aaggcggtca
     2461 gttatttcta cgttttgtgt attggtgaaa tagcgttcca taacgtgcgc catcatatcg
     2521 gcagcaccac aagccgtctg gtaatttggc aaagtacaag tcaattccgg gttgagaatg
     2581 gaaaaaatag ggcgcaatgc atcactgttg gcagcacgtt tcaacatacc gttttcatgc
     2641 gtaattaccg aacctgtaga accttcgctg ccggccgccg aaatagtaag aattgttgcc
     2701 acgggcagtg ctttttcaac ccttttccct tgatagaact cccagaaatc gccatcgtac
     2761 aaagctccca acgcaattgc tttggccgaa tcaattacgc ttccgccacc cacagccaat
     2821 acaaaatcta tcttatcgcg cttgcaaatc tccactcctt cgtacaccag gccacttcgg
     2881 ggatttggct gagcaccgcc caattcagaa aaagttatgt tctctgctgt tagcgaagcc
     2941 tttaccctgt cgagcaaacc gcttttaatt actgaaccgc caccaaaatg gattaataca
     3001 tttgaaccac caaaacgttt tacgtatttt ccggcttcgt tttcacgctc tttgccaaac
     3061 acaaaaaagg ttgggctata aaaattgaaa ttattcatta ttaatttttg ttttttagtg
     3121 atttgaacat gcatttttgt ctagttcccg actggctaac taatcatagc ttagcgctca
     3181 ctcttttata tattcttgtt gaggttcttg gatctgaatt ctcagtcgct aatccaattg
     3241 tattttcgtc aatgaattgt gctttatatt cttggtttgt cttttgtccg tacaaagaga
     3301 ataaatcttt tcctagctta gattcagtta gtttaaattc aaagttggaa ttcctactaa
     3361 tctctgaaat ccaaacttca tttgaatctg caaatagttt tacatattta ttattgttta
     3421 gttttatgat tcgaccaaca agtttgttgt tttctttttg aatttgaatt tgagttccat
     3481 ccattattga agtgcctttt aactcccaaa ttcctataaa tttgtcttct gagacttttt
     3541 caaatttccc tgaacagcta aataaaaata atgtcgtaaa tagtaaagtc acagttgttt
     3601 ttgttattga tttcatattt tatatgtatt ttttattctt ctaaatgcat ggtaacttgt
     3661 tttatttatt ttccctttag gggttagggg ccattctttc tattacaaac ggatgattat
     3721 caaacgttcc gcgtgtagct tcaaagtcag catctttttc agcatcatct ccgtctattc
     3781 caaaacctgt tttgctaacc gaattgaatt cctttttggc atcccttaaa atcaaatcat
     3841 tgaaagtcat ttctgccttt ttcccttttt ccaatatatc ggcaatatcc ttttcatcaa
     3901 tttcagccaa cgattttccc tttcgagcac acaatacatt caatgcaaaa ttcagggaga
     3961 attccggata tttttcaaaa ataacattca actcttgctg aatgtattcc acggaaatat
     4021 cttgagatac aatacgggca accagtttgt caatttcact tttcggagca atcaagcccg
     4081 ccatatccac ccaacaatcg gttcctgaaa ccacatcctt atccgaatct attgttttgc
     4141 cgttcagttt tccggtaatt gtttttgcca gaaaattatc caccgccagt tcatatagtt
     4201 caattccttt acggatagcc gagcgtttta ttttgcagtt ctgataccat acgaaattgg
     4261 tcttttcgtc catgttttgc aacaggctct gaaggatttc aatccctttc aatactttcg
     4321 aaatggtata aggcgacaga aaatcaaagc aaaccggatc tattttatca cctttgcgca
     4381 aatctcgttt cggccatttc tgtacatccc tgattgtgcc tgcactgtgt agattaatac
     4441 cgggcaacaa attgctctcc ccatcatttt ctatcaaata cgaaaatggc aaattggaaa
     4501 tatcaggatt tcctttatga cggcccaaga ccacagtaaa tgctccaatt ttagcgggcc
     4561 acatcaggta cgaatcgctc gaagttttca caccacgctc agtgataccc tggtgaacag
     4621 ggcctaactt atacatatgg ttactaaaat ttgttccgct gcccgcattc ataaacgaat
     4681 acaaagctgt gagcatcaag gtagatttgt gatgagaaac cgtgtaagga cctgcaaaaa
     4741 tagacactgc ttcgccatga agtccctggc aattggcaaa aaatagcgag tcaatagctg
     4801 aaaactgctt gccaattaaa cagccctgtc ccacaaaact acgggaaatc atggctgcat
     4861 cagtaactga agttcctgac tgaataataa aatcgttgca ttgtacaccg gcgccgataa
     4921 taaccggagc caggtcgttg ctcacaatgg ttccgttttc gagcaatatt acgccttcca
     4981 accgcgcaaa atcaccaata cgtacatttt tcaacgtgcc acaattgaca atgcgggcat
     5041 tcgccccgat tcgccccatg tcggaccgtt gtttttcgat ataaacctca acttgttttt
     5101 caagcttctc gattaacgat gtattatgac ggtaaaaagc catcatataa gccaacggag
     5161 ccgaaagttg gtcgaaaatg gggacttcac gaccaccact ttctatcatg gttgctacct
     5221 ttatgccatt tccaaatgca gaaataccat cgacaaccaa caggtttaca ttctctatat
     5281 aagccccttc ggcgatggta tagtttgcaa tatagttgtg aattttatca atgaaaacat
     5341 cattttcaat cacgcaattg tgcaacaccg aattgtaaat accggcatgt ttcttaatgc
     5401 ctccggccaa ttcaaacact ttttgataag tgcctaaaca cactttacct gaaaaatgtg
     5461 tattggatat aaaattgggt gaaaaatctt ctgtaacctg cacttctttc cagttctcgg
     5521 ccgagcagcc ataaacagtg agtgtagcta tttctttatc aagcaattga cggtaagttg
     5581 ccattataat cttttatcgg tttttaatct tcgatttcgg tatagcgttg gaataaaaag
     5641 tcattataag gatagcgttc aatatgaatc gctttgattt tctcatacat caactctttc
     5701 aacgtgtcta tattttgttt ttcgcgagct gaaataaaaa tgcagttatc gtgcattttg
     5761 gccatccatg tttttttcaa ttcatccaaa ctgatatttt cacgtttaac cggcgccagg
     5821 tcatcttcgt ctttcggcgt ataagtaaag gcatcaatct tattaaaaac caggatcata
     5881 ggtttttcct gcgggtcaat ttctttcaac gtttgattca ccacttccag ttgttcttca
     5941 aaatttggat gagagacatc caccacatga accaacaaat cagcttcgcg cacttcgtca
     6001 agagttgatt taaacgattg taccaaatga tggggcagtt tgcggataaa cccgaccgta
     6061 tccgaaagca ggaatggaag attctcgata atcacctttc tgacagtggt gtcgagcgta
     6121 gcaaaaagct tattctctgc aaaaatatcc gacttgctaa tcagattcat caaagtggat
     6181 tttccaacat tagtataccc aaccagcgcc acacgaacca ttttaccacg atttttgcgt
     6241 tgcgtagtca tttgctggtc aatatctttc aggttttgct tcagcaatga aattttggta
     6301 aggataatac ggcggtcagt ctcaatttgt gtttcacccg gaccacgcat cccgattcct
     6361 cctttttggc gttcgaggtg agtccaaagc cttgtcaaac gtggcaacat atattgacat
     6421 tgagccagct ctacctgggt tttggcactt gccgtttgag cccgcttagc gaaaatatct
     6481 aaaattaggg ttgtccggtc cagaattaat actttcaatt cggcttcgat atttcgcaat
     6541 tgcttgggtg acaattcatc gtcaaaaata actacgccaa tttcattctc atccacaaaa
     6601 ttctttattt caatcaattt cccgggtccg acataagttt tcggatttgg aaaatcaagt
     6661 cgctgaaaaa acagcttttc cggcgacgct ccggctgtct cagctaaaaa tgcaagctca
     6721 tcaagatatt cgcgggcttt ttcttcgctc tgtacctggg ttattacacc caccaaaacg
     6781 gctttttctt cgtatatttc tgttttcatc tgttttagtt tatcaaaaaa aa
//
LOCUS       DATDNM010000015         3137 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_109866, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000015 DATDNM010000000
VERSION     DATDNM010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3137
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109866"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..2405)
                     /locus_tag="VI413_00285"
     CDS             complement(162..2405)
                     /locus_tag="VI413_00285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEY6913085.1"
                     /translation="MKKGTLLTLTIWLIGQSLFAQGTVEDYNRAFSLTDRLKDKVFYS
                     NVTPQWIGKSDRFWYIRYTPQGKTYMLVDAQKKTRTALFDHMKLAETLSKVMGKTVDV
                     EQISLPNLRISTNLDTLRFTTNSTKWIYLQQKDSLAKDGKQTFPKDEYWGKVDNEREG
                     KPVVSPDKKQSAFVRDNNLYVKDLKTGVEKALSTDGTKADYYSAYPYWSPDSKKLAVA
                     RIHGAETRQLYLIESSPADQLQPKLQTRDYVKPGDVLPMRTPVIFDVTTGDKKVISTD
                     LCPNQMDIRSFEWLPDNKSVIFEYNERGHKLYRVLEIAAETGNVRTVIEETSKTFVNY
                     SRYFRQTINKTNEIIWMSERDNWNHLYLYDRLTGKVKNQITKGEWYVREVLNVDEKKR
                     EITFSANGMVPNEDPYLIRYYRIGFDGKGLTCLTPDEGMHQVWFSDNKKYLVDVYSMV
                     NKAPVAVLRSAADGKIVMPLEKADITELLKTGWTAPEPFVAKGRDGKTDIWGIIYRPT
                     NFDPNKKYPVIEYIYSGPGSQYVPKTFIANNRNLSAIAELGFILVQMDGMGTSFRSKA
                     FEEIIYKNLKDAGFPDRIAWTKAAAAKYPYMDIEHLGIFGASAGGQEAMGAVLFHPEH
                     YKAAYSSCGCHDNRMDKIWWNEQWMSYPIDKSYEESSNVVNAHLLTRPLMLVVGEMDD
                     NVDPASTYQVCNALIKANKEFELVVLPGVGHTMGGDYGEHKRYDFFVKNLLGVTPPSW
                     SEVGVKK"
     gene            2809..>3137
                     /locus_tag="VI413_00290"
     CDS             2809..>3137
                     /locus_tag="VI413_00290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913086.1"
                     /translation="MKKLILLSLAILTIYTASTQVLLPKVITNNMVLQRGKPVAIWGT
                     ASPKEKVTVEFANQTKTAVTDTAGNWQVKLAPLKASAEPRKMIISGSNTIELENVLVG
                     EVWLCSG"
BASE COUNT          790 a          679 c          732 g          936 t
ORIGIN      
        1 aagattaccg gttgattctt cattcgtttt catacgataa agtatttgct gttgaaacgg
       61 tattgaagct ttttctataa tattaaacat ttgaatttta ttttcgttca attgccctgc
      121 aaaatatatt attggtagga ttgtttaccg taaaatgttt atcacttctt cacacccact
      181 tcactccagc ttggcggcgt aactcccaac aggtttttta caaagaaatc gtagcgttta
      241 tgttcaccat agtcgccgcc catggtgtgc ccaacgccgg gcagaaccac cagttcaaat
      301 tccttgttgg cttttatcag ggcgttgcaa acctggtagg tagaggccgg atccacgttg
      361 tcgtccattt cgccaacaac aagcatcagc ggacgggtga gcaaatgcgc gtttaccacg
      421 ttggaacttt cttcgtacga tttatctatc gggtaactca tccactgctc gttccaccag
      481 attttatcca tacggttgtc gtggcatccg caggaagaat aagctgcttt gtaatgttcc
      541 gggtggaaaa gcacagctcc catggcttcc tgtccgccgg ccgaagcgcc gaaaatgccc
      601 aggtgttcga tatccatgta cggatacttg gccgctgccg ctttggtcca tgctatgcgg
      661 tcggggaatc ctgcatcttt caggtttttg taaataattt cttcgaacgc tttggaacgg
      721 aacgaagtcc ccatgccgtc catttgcacc aggataaagc ccagctcggc aatggcagat
      781 aggttgcggt tgttggcaat aaatgtttta ggaacatact ggctgccggg gccggaataa
      841 atatactcaa ttacggggta ttttttgttc gggtcgaagt tggtagggcg gtaaataatg
      901 ccccagatat cggttttgcc atcgcgtcct tttgccacaa atggttcggg ggcagtccag
      961 ccggttttga gtagctccgt gatgtccgct ttttcgagcg gcataacgat tttgccatct
     1021 gccgcactgc gcagcacagc cacgggcgct ttgttcacca tggagtaaac gtctaccagg
     1081 tattttttat tgtccgaaaa ccagacctga tgcatacctt cgtcaggggt gaggcaagtc
     1141 aatccttttc catcaaaacc aatgcggtaa taccggatca ggtaaggatc ttcgttgggc
     1201 accatgccat tggcggaaaa agtgatttcg cgttttttct cgtccacgtt caatacttcg
     1261 cgcacgtacc actcgccttt ggtaatctgg ttttttactt ttcccgtcag gcggtcgtac
     1321 aaatagaggt ggttccagtt gtcgcgttca ctcatccaga taatttcgtt ggttttgttg
     1381 atggtttggc ggaaatagcg gctgtagttt acaaaggttt tcgacgtttc ttctatcacc
     1441 gttctcacat ttcccgtttc agctgcaatt tcaagtacgc ggtacagctt gtgtccgcgt
     1501 tcgttgtatt caaatatcac cgatttatta tcgggcaacc attcgaagct gcgaatatcc
     1561 atttggttag ggcacaaatc ggtagaaata acttttttgt cgccggtagt cacgtcaaaa
     1621 atcacgggtg tgcgcatagg caacacatcg ccgggtttca catagtcgcg ggtttgcagt
     1681 ttgggttgca gttggtcggc tggcgaagac tcgatcaggt agagttgtct ggtttcagca
     1741 ccatgaatgc gcgctacggc cagcttttta gaatctggcg accagtacgg gtaagccgaa
     1801 taataatcgg ctttggtgcc atcggtgctg agcgctttct ccactccggt tttcaggtct
     1861 ttgacataaa gattgttgtc gcgaacgaat gccgactgct ttttgtcggg cgaaacaacc
     1921 ggtttacctt cccgctcgtt atcgactttt ccccaatatt catctttagg gaaagtttgt
     1981 tttccatctt tagccaatga atctttttgt tgcaaataaa tccatttggt gctgttggtt
     2041 gtaaacctga gcgtgtccag attggttgaa atgcgtaggt tgggaagaga tatttgttct
     2101 acatcaactg tttttcccat tactttggat aatgtttcgg ccagcttcat gtggtcgaaa
     2161 agtgctgtgc gggttttctt ctgtgcatcc accagcatgt aggtttttcc ctgtggcgtg
     2221 tagcggatat accaaaagcg gtcggacttg ccaatccatt gcggggtgac gttggagtaa
     2281 aatactttgt ctttgagcct gtcggtcaac gaaaaggcac ggttgtaatc ttcaacggtg
     2341 ccttgtgcaa aaagtgattg gccaatgagc cagatggtga gtgtgaggag agttcctttt
     2401 ttcattgaaa tattcgaatc tgctaagtga aataataata taaaattcaa tacaaatgta
     2461 ttaaatttta tggagagatt tgcggcacaa cacgcgtaat ggactaaaat gacatgattt
     2521 tagactagat ttttaggtaa atgaaaataa aacttcaatt catggtttat tataaaaaat
     2581 gattatccgc aagaagacct aataagtaaa atcagagtat tcgagttggg tttcgcgatt
     2641 tccaaatcgc ggtcaaaaag caattcacgc gatttggaat tactcctttc agtcgtgacc
     2701 gctggttcgc gagacccagc gcgaatactc cgatttgact tattaggatg tcttgcggat
     2761 aatcatttaa aataagaata agatgatact atcaaaaaaa cacatttcat gaaaaaactc
     2821 atattacttt cgcttgctat tttgacaatt tacaccgctt ctacacaggt tttattaccc
     2881 aaagtaatca ccaataatat ggttttgcaa cgtggcaaac cggttgcaat atggggaaca
     2941 gcttcgccca aagaaaaagt aaccgttgaa tttgccaacc aaacaaagac agcggtaacc
     3001 gatacagccg gaaactggca ggtaaagctt gcaccattga aagcttcggc cgagccgcga
     3061 aaaatgatta ttagcggttc caataccatt gagctggaaa atgtcctggt gggcgaagtg
     3121 tggctgtgct ccgggca
//
LOCUS       DATDNM010000016         2269 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_3022, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000016 DATDNM010000000
VERSION     DATDNM010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3022"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..825)
                     /locus_tag="VI413_00295"
     CDS             complement(<1..825)
                     /locus_tag="VI413_00295"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6913087.1"
                     /translation="MRKLSLVFFVSMLTTLSLLAQTSARGTVKDADSGKPLSGAIITF
                     LKQNISTQTNANGEFKLSYLQAGDEELSISRQGYFTQIKLVNLKTTVANELGEFELKV
                     DIQDEVKQESVLQLSENELSSDENNTQNISASLSSKGDVYISQASFSFNPMRFNIRGY
                     ENQYESTYINGVHFNGLERESFNYSSLGGLNDAMRNQDEINGITANSFTYGNLGGSTN
                     INTRASVYAAGSKASFAYTNRAYKLRGQYTYATGLMPNGWAFAASGVVRWADKGIVD"
     gene            1202..>2269
                     /locus_tag="VI413_00300"
     CDS             1202..>2269
                     /locus_tag="VI413_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018108847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913088.1"
                     /translation="MRIHHSITAVITFALLISSACTAKNNLAPAPDAKLKLQVSCVAF
                     YNLENLFDTIDNENVIDEEFLPNGAMKWGTMKYTAKLQHMSNAISQIGLDYSPQGIAL
                     IGVSEIENRGVLEDLVKQPDLAKRSYQIVHYDGPDRRGVDVALLYNPKLFIVTNSKSY
                     RLHTADTTFRTRDQLMVSGYLQGEKIHVIVNHWPSRTGGEERSRPKRNAAAALTRSIT
                     DSLFRVDPKAKIIIMGDLNDDPFNESCATILGAKKDMNDVKDGQLYNTLWKTLDKGVG
                     SLAYADQWNLFDQIIVSSEIAHSDPSKLKFWKAEVFNKPFLTQQEGRYKGTPLRTHAG
                     GAWTNGYSDHYPTLIYLVKEKK"
BASE COUNT          711 a          474 c          415 g          669 t
ORIGIN      
        1 atccacaatc cctttatcgg cccagcggac aacaccagaa gccgcaaaag cccagccatt
       61 tggcattaag ccggtagcat aggtatattg tccacggagt ttataagccc tgtttgtata
      121 tgcaaaacta gctttcgatc cggcagcata aacacttgca cgggtgttta tattcgttga
      181 acctcccaga tttccgtacg tgaacgaatt ggctgtaata ccatttattt catcctgatt
      241 tctcatggca tcatttagtc cgcctaaaga tgaataatta aagctttcac gttcaagtcc
      301 attaaaatgt acaccgttga tataagtcga ttcatactgg ttctcatacc ctctgatatt
      361 aaatcgcata gggttgaacg aaaagctcgc ctgtgatata taaacatctc cttttgatga
      421 taaggaggcg gaaatgttct gcgtattatt ttcatcgcta cttaattcgt tttcactcag
      481 ttgcaaaaca gattcttgtt ttacttcatc ctgaatatca acttttagtt cgaactcgcc
      541 aagttcattc gcaacagtcg tttttagatt aaccaatttt atttgcgtaa agtaaccctg
      601 tcgcgaaata ctaagttctt catcccctgc ctgcaggtaa ctaagcttaa attcaccatt
      661 cgcattggtt tgcgtagaaa tgttttgttt tagaaaagtt ataattgccc ccgaaagagg
      721 tttacccgag tctgcatctt tcacagttcc cctggctgaa gtctgtgcca gaagagaaag
      781 tgttgtaagc atggatacaa aaaataccag cgatagtttt ctcatacaat tgattcttaa
      841 taatttattc tagacatcat tcatttttct tttttggctg ctaaatattt taggtcgaaa
      901 aaggaggtga agttacaatc ttttttcgaa ttaattacat aattatacaa caatatattt
      961 catttacttc acattttaag gctaaaaagt catcatagtt taaaatttgt aatgaaacag
     1021 gaaatatcaa aactgataat caaactatta gaatgaataa tcaaactgac acatgtatta
     1081 cacctgtggt agtaaagctt gtcaggaaat aatttcagga tttcgttttt tagtatcact
     1141 tttttttctc acatttgttg cccgtttcta attaattttc aaatacaaca aacaaaaaag
     1201 tatgagaatc catcattcaa taacagcagt aatcaccttt gcattgctta tcagttcagc
     1261 ctgtacagca aaaaataatt tagcaccagc tcccgacgca aaattaaaac ttcaggtgag
     1321 ctgtgtagca ttctataatc tggaaaatct gttcgataca attgacaatg aaaatgttat
     1381 tgacgaagaa ttcctgccca acggagccat gaaatgggga accatgaaat acaccgccaa
     1441 actgcaacac atgtcgaatg ccatttcgca gattggatta gactattcac cgcaaggtat
     1501 tgccctgatt ggtgtttctg aaattgaaaa ccggggtgtg cttgaagatt tggttaagca
     1561 acccgacctg gcaaaacgtt cataccaaat tgttcattat gatggtccgg atcgtcgcgg
     1621 agtggatgtt gcattgcttt acaaccccaa attatttatt gttaccaata gtaaatcgta
     1681 ccggttacat acggccgata caactttccg tacccgcgac cagttaatgg taagcggcta
     1741 cctgcaaggc gaaaaaatcc atgtaattgt aaatcattgg ccatcacgta caggcggtga
     1801 agaaagatcg cgtccaaaaa gaaatgcggc tgcagcgctt acgcgctcaa ttaccgactc
     1861 acttttccgt gtggacccaa aagcaaaaat tatcattatg ggagacctga acgatgatcc
     1921 ctttaatgaa agttgtgcaa caattctcgg tgctaaaaaa gatatgaacg atgtaaaaga
     1981 cggacaatta tataatacgc tgtggaaaac gctcgataaa ggcgttggtt ccctggctta
     2041 cgccgatcag tggaatttgt tcgaccagat tatcgtctcc tctgaaattg cccattccga
     2101 cccaagcaaa ctaaaattct ggaaagcaga ggttttcaac aaacctttcc ttacgcagca
     2161 agaaggcaga tacaaaggaa ctcctttgcg cacacatgcc ggcggagcat ggacaaacgg
     2221 ttacagcgac cactatccta ccctcattta tctggtgaaa gaaaaaaag
//
LOCUS       DATDNM010000017         2622 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_110119, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000017 DATDNM010000000
VERSION     DATDNM010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110119"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..794)
                     /locus_tag="VI413_00305"
     CDS             complement(<1..794)
                     /locus_tag="VI413_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HEY6913089.1"
                     /translation="MPIFGTTILSFIPGWSAEGGRFAIEKTAEYGFDMLEIILPAPLN
                     FDPETVKRQLNNHGISGRCTLNLPADCHLPLYPEKAALLIKKALDKVAEMQGDFLGGV
                     LHSAIAQFSGQPCTKNERQIVQQVFTEVANYAHERNITIAPEPINRYESYVFTATHEV
                     LEMIDSIGTENIGLHLDTFHMNIEERNFYDPIIQAGNRLKHLHITESDRGMLGEGNVH
                     WDDLFRGLAEINYQGPLVLENFSSEIKELVGPTSLWRPSKYNSEDLA"
     gene            complement(868..2250)
                     /locus_tag="VI413_00310"
     CDS             complement(868..2250)
                     /locus_tag="VI413_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HEY6913090.1"
                     /translation="MKNTLIILFICIIPTSFYSQVVITNTNFSLGTTGRIGVGLSPNG
                     EGTQWKPLNLSGQGSLAGRMEQNDYMDLLPAIHFSPKLNGTDSTNVTFQVRLGMYSAN
                     GQFMGNTSTRTINGLTIILPETYVEARNIMGSRWSTWAGVRFRRYDDIHICDYFYFDD
                     HSAQGFGVSHKNTELTLLMPASTDSAGVFPYNYDVTVAGATNPAIRQRMVWIGEHSIK
                     FNNGSVMKLLGEFHYVPASSENASKIYPTDNGWVAGVKYSNPLKTSLCGSFNQFSVRY
                     GTGIANGGDNGNTFTWATYGPPDANGKYAHAYSFTAVEHFLLNLSKRISVNGYGVFTQ
                     SQGGSSSLNMDTYFNGTQMYNHKRDIVAGGRLLYYATNWLHLIGEAHYASRKDGDNPE
                     ASMWKFSFAPTIAPLGKRDAWCRPHIRLVFSAARYNDYARDNHYSPYLQINQNRWGTY
                     IGVKTEWWLF"
     gene            complement(2368..>2622)
                     /locus_tag="VI413_00315"
     CDS             complement(2368..>2622)
                     /locus_tag="VI413_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose/galactose MFS transporter"
                     /protein_id="HEY6913091.1"
                     /translation="TSFFMSIMYPTIFSLGIRDLGEHTKLAASVLVMAIIGGALITPV
                     MGLVSVHFGIGIAIVVPLICFAVVTYYGIKGYKEKTEAID"
BASE COUNT          767 a          565 c          510 g          780 t
ORIGIN      
        1 gctaaatcct ctgaattgta cttagagggt cgccaaagcg aagtaggacc aaccagttct
       61 ttaatttctg acgaaaaatt ctcaagaacc aatggtccct ggtaattgat ttcggctaat
      121 ccgcggaata aatcatccca atgtacgttt ccttcgccta acatgccacg gtcactttca
      181 gttatatgta agtgttttaa tctgtttccg gcttgaataa tcgggtcgta aaaatttcgc
      241 tcttcaatgt tcatgtggaa agtgtctaaa tgcagtccga tattttccgt gccaatgctg
      301 tcaatcattt ccagaacttc atgtgtagcc gtgaaaacat agctttcata gcggttaatt
      361 ggttcgggag caatggtaat attgcgttcg tgcgcatagt ttgctacttc tgtaaaaacc
      421 tgctgaacga tttgtcgttc gtttttcgtg cagggctgac cggaaaattg tgcaatggca
      481 gaatgcagta ctccgcccag aaaatcgccc tgcatttcag caactttatc taatgccttc
      541 tttataagca atgccgcttt ctcaggatat agaggtaaat ggcaatcggc aggcaagttc
      601 agcgtacagc gcccggatat accgtggtta ttgagttgtc tttttactgt ttcaggatcg
      661 aaattcaacg gcgcaggcaa aataatttcc agcatatcga atccgtattc tgccgttttt
      721 tctatggcaa aacgtcctcc ttcggcactc cagcctggaa taaacgataa tattgttgtt
      781 ccaaaaattg gcataattgt aagtttttaa attgtatttt tatcttattt gcatattcat
      841 caatcatcac attaccacat catcacatca aaacagccac cattctgttt tcacacctat
      901 gtaagttccc caacgatttt gattgatttg caggtaaggc gaataatgat tatcacgtgc
      961 gtaatcgttg taacgtgctg ccgaaaaaac aaggcggata tgcggacgac accacgcgtc
     1021 acgtttgcct aaaggagcaa tggtaggagc aaaggaaaat ttccacatgg atgcttccgg
     1081 attatcacca tctttgcgcg aagcataatg tgcttctcca atcagatgca gccagttggt
     1141 agcataatac aacaatcgtc ctccagcaac aatatccctt ttgtgattat acatttgcgt
     1201 tccattgaag tatgtatcca tattcaaact agatgatccg ccctgacttt gagtaaaaac
     1261 tccataccca ttgacgctga ttcgttttga taaatttaat agaaaatgtt ctactgctgt
     1321 aaaagaatag gcatgggcat attttccatt cgcatcaggt ggaccataag ttgcccatgt
     1381 aaaggtgttt ccattatcac caccattggc aattccggtt ccataacgta ccgaaaattg
     1441 attgaatgac ccacacaaac ttgttttcag cggattactg tatttaactc ctgcaaccca
     1501 accattatcg gtcggataaa ttttagaagc attttcagaa gatgccggaa cgtaatgaaa
     1561 ctcgcccaat aacttcataa cacttccgtt attgaactta atgctatgct cgcctatcca
     1621 aaccattcgc tgacgaatgg ctggattggt ggctccggca acggtaacat cataattgta
     1681 cggaaaaact ccagccgaat ctgttgacgc aggcattagc aaagtcaatt ctgtattttt
     1741 atggcttact ccaaatccct gagccgaatg atcgtcgaaa tagaaataat cgcaaatatg
     1801 gatatcatcg taccgacgaa aacgaactcc cgcccaagtt gaccagcggc ttcccataat
     1861 attccgtgct tcaacatatg tttcaggcaa gataatggtc aaaccattga ttgttcgagt
     1921 gcttgtgttg cccataaatt ggccgttagc ggaatacatt cccaggcgca cctgaaaagt
     1981 tacgttggtg ctgtctgttc cgttcaattt aggagaaaaa tgaattgccg gcagcagatc
     2041 catgtaatca ttctgctcca tgcgtcctgc taaagagcct tgtcccgata gattcagcgg
     2101 tttccattgc gttccttccc cgtttggaga caatccaacg cctattcgtc cggttgttcc
     2161 caatgaaaag ttggtattgg taataactac ctgcgaataa aagctggttg gaattatgca
     2221 gatgaataaa ataatgagtg tgtttttcat gatagtaaat gtttaatcgt ttaaacaaag
     2281 agctaaaaaa attattgacc ttcaaataaa aatttgtatt tagtcagata atccatataa
     2341 tgacttgttt gccgatttat gattgaatta atcaattgct tctgtttttt ctttgtaccc
     2401 ttttattccg taataggtaa ccactgcaaa gcaaataagc ggaaccacaa tagctattcc
     2461 aatgccgaaa tgaacagaaa ccagacccat aacaggagta atcagtgcac cgccgatgat
     2521 ggccattact aatacggaag cagccagttt ggtgtgttcg ccaaggtctc tgattcccaa
     2581 tgaaaaaata gttggataca tgatagacat aaagaagctt gt
//
LOCUS       DATDNM010000018         2267 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_3084, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000018 DATDNM010000000
VERSION     DATDNM010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3084"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..825)
                     /locus_tag="VI413_00320"
     CDS             complement(<1..825)
                     /locus_tag="VI413_00320"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6913092.1"
                     /translation="MRKLSLVFFVSMLTTLSLLAQTSARGTVKDAESGKPLSGVIITF
                     LKQNISTQTNANGEFKLSYLQAGDEELSISRQGYFTQIKLVNLKPNVVNELGEFELKV
                     DIQDEVKQESVLQLSENELSSDENNTQNISASLSSKGDVYISQASFSFSPMRFNIRGY
                     ENQYESTYINGVHFNGLERESFNYSSLGGLNDAMRNQDEINGITANSFTYGNLGGSTN
                     INTRASVYAAGSKASFAYTNRAYKLRGQYTYATGLMPNGWAFAASGVVRWADKGIVD"
     gene            1200..>2267
                     /locus_tag="VI413_00325"
     CDS             1200..>2267
                     /locus_tag="VI413_00325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008767132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913093.1"
                     /translation="MKIHHSLTAVFTFALLISSACTPKNNLVSTPDQKLKLQVSCVAF
                     YNLENLFDTIDNANVIDEEFLPNGAMKWGTMKYTAKLQHMSNAISQIGLEYSPQGIAL
                     IGVSEIENRGVLEDLVKQPDLAKRSYQIVHYDGPDRRGVDVALLYNPKLFIVTNSKSY
                     RLHTADTSFLTRDQLMVSGYLQGEKVHVIVNHWPSRTGGEERSRPKRNAAAALTRSIA
                     DSLFRVDPKAKIIIMGDLNDDPFNESCATILGAKKELTDVKDGQLYNTLWKTLDKGVG
                     SLAYADQWNLFDQIIVSSEIAHSDPSKLKLWKAEVFNKPFLTQQEGRYKGTPLRTHAG
                     GAWTNGYSDHYPTLIYLVKEKK"
BASE COUNT          706 a          476 c          411 g          674 t
ORIGIN      
        1 atccacaatc cctttatcgg cccagcggac aacaccagaa gccgcaaaag cccagccatt
       61 tggcattaag ccggtagcat aggtatattg tccacggagt ttataagccc tgtttgtata
      121 tgcaaaacta gctttcgatc ctgcagcata cacacttgcc cgggtattga tatttgtaga
      181 acctcccagg tttccgtacg tgaacgaatt ggcagtgata ccatttattt catcctgatt
      241 tcgcatagca tcattcagtc cgcctaacga agagtaatta aaactttcgc gctcaagtcc
      301 gttaaaatgg acaccattta tataagtaga ttcatattgg ttttcatacc cccggatatt
      361 aaatcgcata gggctaaacg aaaagctcgc ctgtgatata taaacatctc cttttgaaga
      421 taacgaggca gaaatgttct gcgtgttatt ttcatcgcta cttagttcat tttcgcttag
      481 ttgcaaaacg gattcttgtt ttacttcatc ctgaatatca actttcaatt caaactcacc
      541 aagttcattt acaacattcg gtttcaggtt taccaatttt atttgtgtaa agtaaccctg
      601 tcgtgaaata ctgagttctt cgtcacctgc ctgcagataa cttagtttaa attcaccatt
      661 tgcattggtt tgcgtagaaa tgttttgctt tagaaaagta ataatcaccc ccgaaagagg
      721 tttacctgat tctgcatctt tcacagttcc cctggctgaa gtctgtgcca gaagagaaag
      781 tgtagtaagc atggatacaa aaaataccag cgatagtttt ctcatacaat tgattcttaa
      841 taaattattc taaacatcat tcatttttct tccccctgct aaatatttta ggtcgaaaaa
      901 ggaggtgaag ttacaatctt ttttcgaatt aattacataa ttatacaata atatatttca
      961 tttacttcac atttcaaggc taaaacgtca tcatatttta aaatttgtaa tgaaactgga
     1021 attattaaaa ctgagaatca aactattaga atagataatc aaattgacac aggtattaca
     1081 cctctggttg taaagcttgt cgggagataa attcagaatt tcgtttttta gtttcacttt
     1141 tttttctcac atttgttgcc cgtttctaac taattttcaa atacaataaa gaataaagta
     1201 tgaaaatcca tcattcatta acagcagtat tcacttttgc attgcttatc agttcagcct
     1261 gtacgccaaa aaataattta gtatcaactc ccgaccagaa attaaaactt caggtgagct
     1321 gcgtagcatt ctataacctt gaaaatcttt tcgatacaat tgacaacgcc aatgttatag
     1381 atgaagaatt cctgcccaac ggagctatga aatggggaac catgaaatat accgccaaac
     1441 ttcaacatat gtcgaatgct atttcgcaaa ttggattaga atactcaccg cagggcattg
     1501 ctctgatagg tgtttctgaa attgaaaacc ggggcgtgct tgaagattta gttaagcaac
     1561 ccgaccttgc aaagcgctct taccagattg ttcattatga tggtccggat cgtcgcggag
     1621 tggatgttgc attgctttac aatcccaaat tatttattgt taccaatagc aaatcatata
     1681 ggttacatac ggccgatacc agtttcctca cccgcgacca gttaatggta agcggctacc
     1741 tgcaaggcga aaaagttcat gtaattgtaa atcactggcc atcacgtacg ggcggtgaag
     1801 aaagatcgcg tccaaaaaga aatgcggctg cagcacttac gcgctcaatt gccgactcac
     1861 tttttcgtgt ggaccccaaa gcaaaaatta tcattatggg cgacctgaac gatgatccat
     1921 ttaatgaaag ttgtgcaact attttgggag ctaaaaaaga gttgacagat gtaaaagacg
     1981 gacaattata taatacgctg tggaaaacac tcgataaagg cgttggctcc ctggcctacg
     2041 ccgatcagtg gaacctgttc gaccagatta ttgtctcttc tgaaatagcc cattccgacc
     2101 caagcaaact taagctatgg aaagctgagg ttttcaacaa acctttcctt acgcagcaag
     2161 aaggcagata caaaggaact cctttgcgca cacatgccgg cggagcatgg acaaacggtt
     2221 acagcgacca ctatcctacc ctcatttatc tggtgaaaga aaaaaag
//
LOCUS       DATDNM010000019         2088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_537103, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000019 DATDNM010000000
VERSION     DATDNM010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537103"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..715
                     /locus_tag="VI413_00330"
     CDS             <1..715
                     /locus_tag="VI413_00330"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY6913094.1"
                     /translation="IGLNAAKDKFFSIIAHDLKGPFNSIIGFSDLLVDGIREKDYEEI
                     EKYAMIIQNSSRRAMDLIMNLMEWSRSQTGRLDFNPENMDIVALVKTIAQLLNDSAQQ
                     KSIVLYTEMPEQTMVFVDKAMMGTVLRNLISNAIKFTNAGGEIVISVNKTSEMVIVTV
                     TDNGVGIRADAMDKLFVIEKSYSTIGTNDEKGTGLGLILCKEFIERHGGTIWAESEFG
                     KGSSFHFTIPLQLMELHSE"
     gene            886..>2088
                     /locus_tag="VI413_00335"
     CDS             886..>2088
                     /locus_tag="VI413_00335"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6913095.1"
                     /translation="MIKILAIDKMNHSLNGLVTIVNEILPNSVIFTAHEGDRITEKTL
                     EYNPDIILMSLSNDTIRICTLLKEDARLNVIPVVFIDAVRPDKYKRVDALKAGADAFL
                     TNPIDKPELFTLIKAMKKVKDANALTQEKEIFRSDVELKNSKVFKKNQLNTLQLSDNL
                     NTGNLSLLNTVELLHHSEQSYRNLFEANPHPMFIFNQETLRFLAVNDRTIQHYGYSRE
                     EFQNMTICDIRPEEDIERLLDTVKDANYGLRNVGIWRHKKKNNQIIFVEITSHPIIWL
                     GQQAVLILAHDITERKLAEEELKTALQQLEFHENNSPMAVIEFNEKFQIVKWSKNAKN
                     IFGWSAEEVLGKSMGEFKWVHEEDMERVALLSAAMMVSDKTSNCHINRNYTKDGSVIT
                     CEWYNSAMI"
BASE COUNT          735 a          316 c          428 g          609 t
ORIGIN      
        1 aattgggctc aatgcagcca aggataaatt tttttcaatc atagcgcacg acctcaaagg
       61 tcctttcaac agtattatag gatttagtga tttgctggtt gacggaatac gggaaaagga
      121 ttatgaagaa attgaaaaat acgccatgat tattcagaat tcttcacgca gggcaatgga
      181 ccttataatg aatttaatgg aatggtcgcg ttcacagacg ggccgattgg atttcaatcc
      241 agaaaacatg gatattgttg cgctggtaaa aacgatcgct cagttattaa acgattctgc
      301 acagcaaaaa tcaattgttc tttatactga aatgccagaa caaacgatgg tatttgttga
      361 taaggcaatg atgggtactg tattgcgaaa cctaatttca aatgccataa aatttacaaa
      421 tgcaggcggt gaaattgtca tttctgtaaa taagacttcg gaaatggtga ttgtaacagt
      481 taccgataat ggagttggca ttagagctga tgcaatggat aagttgtttg ttattgaaaa
      541 gagctattca accattggga caaatgatga aaagggtacg ggattgggct taatattatg
      601 caaagaattt attgaaagac atggaggtac catttgggca gaaagtgaat ttggaaaagg
      661 aagcagtttc catttcacga ttcccctaca gctaatggaa ttacattctg aataattgtg
      721 ttatctaata ttatatatta taagtgttgc atggtaggaa attaataatt attttgctgc
      781 ctattattaa ggcgttccat cttgaaaaac aaaggatatc acagatggag aaccaccgca
      841 aacttaaaaa ataggaacta cgcctataat ttacaaattg taaaaatgat aaagattctt
      901 gcaattgata aaatgaatca ttcgctcaat ggtctggtga ctattgtcaa tgaaatttta
      961 cctaattcag taatctttac agcacacgaa ggagatcgaa taacagagaa gacactggaa
     1021 tataacccgg atattatttt gatgtcattg agcaatgata ctatcagaat ttgtacttta
     1081 ttaaaggagg atgcaagatt aaacgttata cccgttgttt ttatagatgc tgttcgacct
     1141 gataagtata aacgggtaga tgcactgaaa gctggtgcag atgctttttt gacaaatccc
     1201 atagataaac cagaattgtt tactttgata aaggcaatga aaaaagttaa agatgcaaac
     1261 gctttaactc aggaaaagga aatctttcgt tctgatgttg aattaaaaaa ctctaaggtt
     1321 ttcaaaaaaa atcaactaaa cacacttcaa ctttcggaca atttaaatac aggaaatctt
     1381 tctttattaa atactgtgga attgcttcat catagtgaac aaagctaccg gaatttattc
     1441 gaagcaaatc ctcatcccat gttcatcttt aatcaggaaa ccttacgttt tttggcagtc
     1501 aatgatagaa cgatacaaca ttatggatat tctcgtgaag aatttcaaaa catgacaatc
     1561 tgtgatatcc ggcctgaaga agatatagaa agattgctgg ataccgtaaa agatgccaat
     1621 tatggtttaa gaaatgtggg gatttggcgt cataaaaaga aaaacaatca aataatattt
     1681 gttgaaataa cctcgcatcc cattatttgg ttgggtcaac aggctgtcct aatactggct
     1741 catgatatta ctgagcgcaa acttgcagaa gaagagttaa aaacggctct gcaacaattg
     1801 gaattccatg agaataattc tcccatggca gtaatcgaat tcaatgagaa atttcaaata
     1861 gtcaaatggt ccaaaaatgc caagaatata tttggatgga gcgccgagga ggtacttggt
     1921 aaaagtatgg gggaatttaa atgggtgcat gaggaggata tggaaagagt tgcgttgctt
     1981 agtgctgcga tgatggtatc cgataaaaca agtaattgcc atatcaaccg gaattatacc
     2041 aaggacgggt cagtaattac ctgtgagtgg tataactcgg ctatgatt
//
LOCUS       DATDNM010000020         2660 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1711895, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000020 DATDNM010000000
VERSION     DATDNM010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1711895"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..642)
                     /locus_tag="VI413_00340"
     CDS             complement(13..642)
                     /locus_tag="VI413_00340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005782927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY6913096.1"
                     /translation="MCKFTTIILLCSAFSVFSTQISAQNADIELLRSINSTEGTVGYS
                     KFISNTTTEVAFGVPVLMGVVALVEQDDDMLKSAVYIGVSIGVGGVVTQALKYSINRP
                     RPAVTYTDIIAYEGERTLSFPSGHTSLAFSTATALCLKYPKWYVIVPSCLWACSVGYS
                     RMNLGVHYPSDVVAGALIGAGSAFVAYKVNNWFWKKHQNKKLIGLQAYL"
     gene            756..1277
                     /locus_tag="VI413_00345"
     CDS             756..1277
                     /locus_tag="VI413_00345"
                     /inference="COORDINATES: protein motif:HMM:NF024911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6913097.1"
                     /translation="MYKIAIIGPESTGKTALAKSLAVHFKSPWVPEYAREYVEKLTDP
                     YTYDDICNIAVKQIEQESAFEGPQPTDEKYIFFDTDLIITKVWFSYCFQRIPDFLTER
                     LKNSFFDLYLLCAPDLMWEPDPVREHGNDREYFFDWYKNEIEQTGTPYVIVTGTGNQR
                     IQNAIVAIQNQLL"
     gene            1387..2259
                     /locus_tag="VI413_00350"
     CDS             1387..2259
                     /locus_tag="VI413_00350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005844169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine acetyltransferase"
                     /protein_id="HEY6913098.1"
                     /translation="MNKNLLETIEKLSQIEGFQDVCHEHGTNDTMPSTDVLQEIVQLA
                     RSILFPGYFGDAAVNTHTMMYHIGVNVDRLQFLLAQQIKAGICFDCKADAQNIEEAER
                     VAKKRATDFIMQMPEIREKLHTDVIAAYNGDPAAKSFGEVIFCYPSIRAISNYRIANA
                     LLKLNVPLIPRIITEMAHSETGIDIHPGATIGDYFTIDHGTGVVIGETAIIGNNVKMY
                     QGVTLGAKSFPLDEDGNPIKGIPRHPRIGNNVIIYSNSTILGTITVGDGAVIGGNLWV
                     DTDVAPGSKLSQRK"
     gene            2306..>2660
                     /locus_tag="VI413_00355"
     CDS             2306..>2660
                     /locus_tag="VI413_00355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="THUMP domain-containing protein"
                     /protein_id="HEY6913099.1"
                     /translation="MEFEMLAKTFRGLEEVLATELVGIGANNVQIQRRAVSFTGDKAL
                     MYKANLCCRTASRILKPIMSFDASNPDEVYEQVKKINWSNYMSVDSTFAIDSTVFSEE
                     FRHSKFVAYRVKDAIA"
BASE COUNT          893 a          543 c          506 g          718 t
ORIGIN      
        1 ggtacagcta atttacaaat aagcctgtaa ccctattaat tttttatttt ggtgcttctt
       61 ccagaaccaa ttattaacct tataagcaac aaaagcactc cccgcaccga ttaaggctcc
      121 ggccactaca tcagaaggat aatgcacacc aagattcatt ctcgaatatc caacagaaca
      181 cgcccacaaa caacttggca caataacata ccactttgga tatttaagac ataacgcagt
      241 agccgtagaa aaggccagtg aagtatgacc cgagggaaat gatagagttc tttccccttc
      301 ataagcaatg atatcagtat atgtaacagc aggacgaggc ctgtttattg aatatttcaa
      361 agcctgagta acaacacccc caacaccaat actcacacct atataaaccg cactcttcaa
      421 catatcatca tcttgctcaa ccaaagccac aacccccatg agaacaggta ctccaaaagc
      481 aacttcagta gtagtattcg agataaactt tgaataacct actgtacctt cggtgctatt
      541 aattgacctt aagagttcga tatctgcgtt ttgagccgaa atttgcgtac taaataccga
      601 gaatgcacta caaagcagaa taattgtcgt aaatttgcac atgttttttt cctgcaaata
      661 taatttattt tgtttaaagt tcacgacaaa ccaaagtcat acaggtaaaa cggagagttt
      721 aagcccattt aaaaatcgaa attctaaacc ggtttatgta taaaatagcc ataataggcc
      781 ctgaatcgac aggtaaaacg gctttagcca aaagtttggc ggttcatttt aagtctccat
      841 gggttccgga atatgcccgc gagtatgtag aaaaacttac agacccttat acttacgacg
      901 atatttgcaa tattgcagta aagcaaattg agcaggaatc tgcttttgaa ggaccacagc
      961 ctacagatga aaaatatatt ttttttgaca ccgatttgat aataacaaaa gtttggtttt
     1021 catattgttt tcaaagaatc ccggactttt tgaccgaacg attgaaaaat tctttttttg
     1081 atttatattt actttgtgca ccagatttaa tgtgggaacc agaccctgtt cgggagcacg
     1141 gtaacgaccg cgagtatttc ttcgattggt ataagaatga aattgaacaa accggaacac
     1201 cctatgttat tgttaccgga actggcaatc aacggattca gaatgccatt gttgccatac
     1261 agaatcaact gctataaaca aacatatatt ttattcatat gaaatgagca tgggtacaga
     1321 cattcacaca aaatatcaaa atccgacatg cgagttccat gcgaaaacta aaacaattat
     1381 tcacgcatga ataaaaattt attagagacc atcgaaaaac tctctcaaat tgagggtttt
     1441 caagatgttt gccacgaaca cggtacgaac gatacaatgc cgtctacaga tgtactacaa
     1501 gaaattgtac aactggctcg ctccatttta tttcccggat actttggcga tgcagcagta
     1561 aatacacata ccatgatgta tcatatcggt gtaaacgttg accgactgca attcttattg
     1621 gctcagcaga ttaaagccgg aatttgtttt gattgcaaag cagatgccca aaatatagaa
     1681 gaagctgaac gcgtggcaaa aaaaagagcc actgatttca ttatgcaaat gcctgaaatc
     1741 agagaaaaac tgcatactga cgtgattgct gcttacaacg gcgacccggc agctaaaagt
     1801 tttggtgaag taattttttg ttaccccagc attcgtgcaa tcagcaatta caggattgcc
     1861 aatgcactgc taaaacttaa cgtgccatta attccccgta ttattaccga aatggcacac
     1921 tctgaaaccg gaattgatat tcatcctggt gctaccattg gagactactt cacaattgac
     1981 catggaacag gtgtggtaat tggagaaaca gccataatag gcaacaacgt aaaaatgtat
     2041 cagggagtaa ctttaggtgc aaaaagcttc ccgcttgatg aagacggtaa tccgataaaa
     2101 ggtataccac gccatccccg cattggaaat aacgtaatta tttactcaaa ctctacaatt
     2161 ctggggacca ttactgtcgg cgatggagcc gtaatcgggg gtaacctctg ggtggatact
     2221 gatgttgcac cgggctcaaa attatcacaa cgaaaataaa taaagacagg aaaccataaa
     2281 catggtgacc gtagaaaaga aaaatatgga atttgaaatg ttagcgaaaa cctttcgggg
     2341 tttggaagaa gtattggcga cggagttagt aggcattggt gcaaataatg tacaaattca
     2401 acggagagcg gtgagtttta ctggcgataa agccttaatg tataaggcaa atttatgctg
     2461 tcgtacggct tctcgcattt taaaaccgat catgtcattc gatgcgtcga atcctgacga
     2521 agtttacgaa caagtaaaaa aaataaactg gagcaattac atgtccgtcg acagtacctt
     2581 tgctatcgac tctacggttt tttcggaaga gtttcgccat tccaaatttg tggcctatcg
     2641 cgtaaaagat gctattgccg
//
LOCUS       DATDNM010000021         6373 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_857318, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000021 DATDNM010000000
VERSION     DATDNM010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6373
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_857318"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1152
                     /locus_tag="VI413_00360"
     CDS             <1..1152
                     /locus_tag="VI413_00360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6913100.1"
                     /translation="TGVLAIFVMLLGAGIKYWAISGHFKGSFELSIGTWQALGTTPTS
                     ALMAGLGFGIFGVGCEMFGIAANKAVVRWFRGKEMALAIGLNTSTGRIGTALAMFTPL
                     PLYNLTKDVSTPILVSILLLCIGLLVFIFFTVLDKRLDTEEKDAGIAKDEEFKFTDVT
                     DIAKNRAFWYIAILCVLFYSAVFPFIKFATNLIVQKFSVTDTFAGYIPALLPFSALLL
                     TPLFGGISDKKGKAATIMIMGSILLVFVHLLFSIPSLNSFPIAIGLVILLGIAFSLVP
                     SAMWPSVAKIIPHSKLGTAYAMIFWVQNIGLMLVPLLIGAVLDKYCIIGVITKIVDGK
                     EQHLTQYNYTIPMLIFACFGVLAIGFAYLLKAEDKKKGYGLEKPNVIDL"
     gene            complement(1210..3552)
                     /locus_tag="VI413_00365"
     CDS             complement(1210..3552)
                     /locus_tag="VI413_00365"
                     /EC_number="1.1.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004470 - malic enzyme activity [Evidence
                     IEA];
                     GO_function: GO:0004471 - malate dehydrogenase
                     (decarboxylating) (NAD+) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HEY6913101.1"
                     /translation="MAKLTREDALLYHSQGKPGKIEVIPTKPYSSQRDLSLAYSPGVA
                     EPCLEIEKDPNAAYEYTSKGNLVAVISNGTAVLGLGDIGAMAGKPVMEGKGLLFKIFA
                     GIDVFDIEVDEKDPEKFIQVVKAIAPTFGGINLEDIKAPECFEIEERLKAELDIPLMH
                     DDQHGTAIISSAGLINALEIVGKKIEEVKIVVNGAGAAANSCTQLYMMLGAKLENIVM
                     VDSKGVINKQRTDLNSRKKPFATDRTITTLAEAVKDSDVFLGLSVAGVLSFEMVRSMN
                     ANPIVFALANPNPEISYDDAMSARKDIIFATGRSDHPNQINNVLGFPYIFRGALDVRA
                     KCINEEMKIAAVKAIAELTKKPVPDVVNAAYNLKRISFGRDYIIPKPLDPRLLTIVAP
                     AVAKAAIDSGVARKEITDWEGYNDHLRAMMGSDNKMLRHFYDMAKQNPKRVVFSESNH
                     KNMIKAAESALAEGICHPILLGNEEKIMHIAAENDIDLTGIEIINLRHDREEKRRNIF
                     AHKLAEKRSREGMTFDEAYEKMYERNYFGMMMVEMGEADALITGVYTKYADSVQAAKD
                     VIGIREGTKHIAAMHIMNTKKGTFFLADTLFNRHPCTDALIDIAKLTHDTVKFFAHEP
                     VMAMLSYSNFGSDKNGSPASVHQVVETLHKTYPDMIVDGEMQVTFALNKELRDKKYPF
                     SKLAGKNVNTLIFPNLSSANTAYKMMIEMGLAETIGPIQMGLNKPVHILDVESSVRDI
                     VNMTAVAVLDAIVEEQIRTNNLERIGKVAETSSADMTSIC"
     gene            complement(3669..4202)
                     /locus_tag="VI413_00370"
     CDS             complement(3669..4202)
                     /locus_tag="VI413_00370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEY6913102.1"
                     /translation="MIVDCNYTLEEAVAGSKAPKKILSQLQLINVQYYSTDGKIHQGQ
                     ILTNRKMVNRLEVMFQFMKQVKFPVVHAIPVVKYNWNDDLSMQANNTYSFCYRNPSYS
                     KHARGMAIDINPYFNPLRWKEGYTYRQNKPVGASYNPSVSGTFYDSNPVVLEFRKNGL
                     RWGRTFSRKYDDHHFEM"
     gene            4562..5653
                     /locus_tag="VI413_00375"
     CDS             4562..5653
                     /locus_tag="VI413_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006801154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HEY6913103.1"
                     /translation="MRLNSLSILNYKNIEEAELVFSPKINCFIGNNGMGKTNILDAIY
                     YLSFCKSHSNSIDSQNIMHNAEFCLLQGKYMLGDSAEDIYCGMKLRQKKQFKRNKKEY
                     ERLSDHIGLLPLVLVSPDDSVLISEGSDERRKFIDGVISQFNKNYLNQLLQYNNALKQ
                     RNALLKIETPIDDSLLDIWEDQMALYGTYIYEQRKLFIDEFVPIFQNFYSHISGGNET
                     ISLTYHSQHQEHDIKSRMIATRDRDRMLGYSTQGIHKDELEMLLDSYPIKRVGSQGQN
                     KTYLISLKLAQFDFLKRTHKLSPLLLLDDIFDKLDSNRVKKIVELVSGETFGQIFITD
                     TNREHLDSILLQLGQESAIFNVENGKIMY"
     gene            5963..>6373
                     /locus_tag="VI413_00380"
     CDS             5963..>6373
                     /locus_tag="VI413_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005873660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide reductase N-terminal alpha
                     domain-containing protein"
                     /protein_id="HEY6913104.1"
                     /translation="METKTFTPEEIRKASIEYFKGDDLATKVWATKYALKDSFGNTYE
                     LTPDDMHRRLAKEIARIEKKYPNPLTEDELFELFRNFKYIVPQGSPMTGIGNEFQVAS
                     LSNCFVIGFDTDSDSYGAIIKLDEEQVQLMKRRGG"
BASE COUNT         1976 a         1206 c         1122 g         2069 t
ORIGIN      
        1 accggagttc tggcaatttt tgtcatgctt ttgggtgccg gaattaaata ttgggctatc
       61 tccggacact ttaaaggctc atttgaactt tcaattggaa cttggcaagc tttaggaact
      121 actccaacat ccgctttaat ggcagggctt gggtttggta tatttggagt tggttgcgaa
      181 atgtttggaa ttgctgcaaa caaggctgtt gttcgttggt tcagaggaaa agaaatggca
      241 ttggcaatcg gattaaatac ttctaccgga cgtattggca cggctttggc tatgttcacg
      301 ccacttccat tatataatct gacaaaagat gtaagtacac cgattttagt atcaatcctg
      361 ttgttatgca tcggtttatt agtatttata ttctttactg tattagataa acggttagat
      421 actgaagaaa aagatgccgg gattgcaaaa gatgaagagt ttaaatttac agacgttact
      481 gacattgcta aaaacagagc attctggtat attgctatac tttgtgtttt attctattca
      541 gcagtgtttc catttatcaa gtttgcaacc aacctcattg tgcagaaatt ctctgtaact
      601 gatacatttg ctggttatat tcctgcatta ttaccattca gtgcattgtt gctaactcct
      661 ctttttggag gcatatcaga taaaaaaggg aaagctgcta ccattatgat tatgggatca
      721 atattgttgg tttttgtaca cttattgttt tcaatcccat ccttgaatag cttcccgata
      781 gctattggat tggttatttt actgggaatt gcgttctctt tagttccatc ggctatgtgg
      841 ccatcggtag ctaaaatcat tccgcacagt aaattgggaa ctgcctatgc catgattttc
      901 tgggttcaaa acattggctt aatgttagta cctctattga ttggtgctgt gctggataaa
      961 tactgtatta tcggtgttat aactaaaata gttgacggaa aagaacaaca cctcacgcaa
     1021 tacaattaca ccattccaat gcttatcttt gcttgttttg gtgttttggc tattggtttt
     1081 gcatatttgc tcaaagccga agataaaaag aaaggttatg gtttggagaa accaaatgta
     1141 attgatttat aaaaataggc ttaaaaaaaa ggcgcgataa ctatcgcgcc ttttttatgt
     1201 gaattaaaat cagcaaatag aagtcatatc ggctgatgaa gtttcagcca ctttaccgat
     1261 acgttccaga ttgtttgttc tgatttgctc ttcaacaatt gcatcgagta cagccacagc
     1321 cgtcatgttt acaatatctc gaacagagct ttctacgtcc aaaatatgaa ccggtttgtt
     1381 caatcccatt tgaattggtc cgattgtttc agctaatccc atttcaatca tcattttata
     1441 ggctgtattt gccgaactca gattagggaa aataagtgta tttacatttt ttcctgctaa
     1501 ttttgagaat gggtattttt tgtcgcgcaa ctctttgttc agggcaaaag tcacctgcat
     1561 ttctccatct acaatcatat caggataagt tttatgcaaa gtttcaacta cttgatgtac
     1621 acttgccggg ctaccgtttt tatctgaacc aaagttggaa tatgaaagca tggccataac
     1681 aggttcatga gcaaagaatt tcacggtgtc atgtgtaagt ttggcaatgt caatcaaagc
     1741 atcagtacaa gggtggcggt tgaacagcgt gtcagccagg aagaatgttc ccttcttcgt
     1801 attcataata tgcattgcag caatatgttt tgtgccttca cggattccga taacatcttt
     1861 tgccgcctga acagagtctg catattttgt gtaaacacca gtaatcaaag catctgcttc
     1921 acccatttcc accatcatca ttccaaaata gttccgttca tacatttttt cgtatgcttc
     1981 gtcaaaggtc ataccttcac ggctacgttt ttcagccaat ttatgtgcaa atatatttcg
     2041 gcgtttttct tcgcgatcat ggcgcagatt gataatttca atgcctgtca aatcgatatc
     2101 gttttcggca gcaatgtgca taattttctc ttcatttcca agtaaaattg gatggcaaat
     2161 accttcagcc aacgctgatt cagcagcttt aatcatattt ttatgatttg attctgagaa
     2221 tacaacacgt tttgggttct gtttagccat atcgtagaaa tgacgaagca ttttattatc
     2281 gcttcccatc atggcacgaa ggtggtcatt gtaaccttcc caatcggtta tttctttacg
     2341 ggccactcca gagtctatgg ctgcttttgc aactgccggc gctacaatag taagcaagcg
     2401 tggatcaagc ggtttcggaa tgatataatc acgtccgaaa cttatgcgtt ttaggttata
     2461 tgcagcattt acaacatctg gaaccggttt ttttgttaat tcagcaatag ccttaacagc
     2521 tgcaattttc atttcttcgt tgatacattt agcacgcaca tccaaagcgc cacggaaaat
     2581 atatgggaat cccaatacat tattgatttg gttaggatga tcggaacgtc ctgttgcaaa
     2641 aatgatatct ttacgggcag acatagcatc gtcgtaagat atttccggat ttggattagc
     2701 caatgcaaaa acgatcggat tggcattcat agaacgaacc atttcaaaag ataaaacacc
     2761 tgcaactgac aaacctaaga atacgtcaga atctttaact gcttcggcta gtgttgtaat
     2821 tgttctgtct gtagcaaaag gttttttacg tgaatttaaa tctgtacgtt gtttattgat
     2881 aacaccctta gaatcaacca taacgatgtt ttcgagtttg gctcctaaca tcatatataa
     2941 ttgcgtacat gaattggcag cagcaccggc tccatttact acaattttta cctcttctat
     3001 ctttttacca actatttcaa gcgcattaat caatccggct gacgaaataa tagctgttcc
     3061 gtgttggtca tcgtgcatca atggaatgtc cagttctgct tttaatcgtt cttcaatttc
     3121 aaaacattca ggagctttaa tatcctccag gttgatacct ccaaaagttg gagcaattgc
     3181 ttttaccacc tgtatgaatt tttccgggtc tttttcatcc acctcaatat caaacacatc
     3241 gatacccgca aaaattttaa acaacaaacc tttaccttcc attacaggtt ttcctgccat
     3301 ggcacctata tctccaagcc caagaactgc tgtaccatta gaaataacgg caactaaatt
     3361 accttttgaa gtgtattcat aagccgcatt cgggtctttt tcaatttcca gacatggttc
     3421 tgcaacaccc ggtgaatacg ccagagataa atcgcgttga gaactgtacg gctttgttgg
     3481 aattacctca atttttccgg gcttaccttg tgagtgatag agaagagcat cttctctcgt
     3541 taattttgcc ataataaata gatataaata gattgtataa ttaatgtggg atatttttta
     3601 taactgtcgc aaatttacaa aataaaatat caatatgaaa tttattcaaa gaaatttatt
     3661 cataaatatt acatttcaaa atggtggtca tcatacttgc gtgaaaaagt cctcccccag
     3721 cgcaatccat tctttctaaa ttccagaacc actggatttg agtcataaaa agtacccgaa
     3781 actgagggat tataactcgc accaaccggc ttattctgtc tgtaagtata accttccttc
     3841 cagcgcaggg gattaaaata aggattaata tcaatagcca ttccgcgcgc atgtttcgaa
     3901 taacttgggt ttcgataaca aaaactataa gtattattag cttgcatcga caaatcatca
     3961 ttccaattat attttacaac gggaatagca tgaacaaccg ggaatttcac ctgcttcata
     4021 aactgaaaca tgacctccaa cctattcacc attttacggt tagtcagaat ttgtccctga
     4081 tgaatttttc catcggtaga ataatattgt acatttatga gctgcaactg acttagtatt
     4141 tttttggggg cttttgagcc ggcaaccgct tcttcgagtg tataattgca atcaacaatc
     4201 ataactggct tttttatttt acaaatttgc tgagttcgtg ctacctcttg tttcttttcg
     4261 gagttacatg acacgagcaa aaacagaaca agtatgctga aaatttgatg aaatctaaac
     4321 atttatttat aacaaaataa aaacattata tttaatttaa acaattaaat ataaggaaat
     4381 taaaagggaa ttcaattaaa tttttactta taggcaaagt tacaatttta cgaataaaac
     4441 tagctataaa gcagcgctta tttcattatt atatttttgt ttaacactac gtgattcaaa
     4501 aaccgaattg tacttgagta aataatatgt acatttgcat agaataaaaa ctatcgattt
     4561 catgcgtcta aactccctat ccatacttaa ttacaaaaat attgaagaag cagaactagt
     4621 cttttcgccc aaaataaact gcttcattgg caataatggt atggggaaaa ccaacattct
     4681 ggatgcaatt tattatctgt ctttttgcaa aagccactcc aattcaatcg attcgcaaaa
     4741 catcatgcac aatgctgaat tttgcttgct gcaaggcaaa tatatgcttg gcgattctgc
     4801 tgaagatatc tattgcggca tgaaacttcg ccagaaaaag caatttaaac gcaacaaaaa
     4861 agaatacgag aggctttctg atcatatagg actattgcct ttggtattgg tttcgcccga
     4921 tgactcagtg ctgatttcgg aaggaagtga tgagcgtaga aaattcattg atggtgtaat
     4981 ttcccaattc aacaaaaact acctgaatca gctgcttcaa tacaacaatg cactaaaaca
     5041 acgcaacgct ttattaaaga ttgaaactcc tattgatgat tcattactag acatctggga
     5101 agatcaaatg gctttatatg gcacttatat ttatgagcaa cgaaagcttt ttatcgatga
     5161 attcgtacca atttttcaaa atttctattc acatatttct ggtggtaatg aaacaatcag
     5221 cctgacatat cactcgcaac atcaggagca tgatataaaa agccgcatga ttgctacccg
     5281 ggaccgcgat agaatgttgg gctattcaac ccagggaata cataaagatg agctggaaat
     5341 gctacttgat agctacccga taaaacgggt tgggtcgcaa ggtcaaaata aaacttatct
     5401 catatcgctt aaacttgctc aatttgattt tctgaaacgc acccataagt tatcgccctt
     5461 actcctactc gatgacattt ttgacaagtt ggattccaat cgcgtgaaaa aaattgtaga
     5521 attagtttct ggcgaaacat ttggacagat ttttattacc gacacgaatc gtgaacattt
     5581 agattcaata ctgctacaac taggacagga atctgctatt tttaatgttg aaaatggcaa
     5641 aataatgtat taatgtgtaa taaaaagtca aaataactca ccctcataca cgtaaattta
     5701 aatatcacag ctttcctttt ttaaatattg ctatttagat tgaatttcat tttggaaaat
     5761 attttcccaa aatgaaattt ttatttcatt tatattcagc agtatagaaa atattttgga
     5821 gaacattata ttttctgttg ataaaaaata attcttcatg ttgcaattcc gggaataaat
     5881 gcctaacatt gtagtgcgat ttcaacgcaa taaaacaaaa ccataattca cttataataa
     5941 tcttattaag aaatttttta tcgtggaaac aaaaacattt actcctgaag aaattcgtaa
     6001 agcatctatt gagtacttca aaggtgatga tttggctacc aaagtttggg caaccaaata
     6061 tgcgctaaaa gattcgttcg gcaacacgta cgaattaact cctgacgaca tgcatcgccg
     6121 tttggcaaaa gaaattgccc gaattgaaaa aaaataccca aatccgctta ctgaagatga
     6181 acttttcgaa ttattccgta acttcaagta cattgttcca caaggaagcc caatgacagg
     6241 aattggaaac gaatttcagg ttgcttcgct gtccaattgt tttgttatcg gattcgatac
     6301 tgattctgat tcatacggag ctattatcaa gctggatgaa gaacaggtac aattaatgaa
     6361 acgtcgcgga gga
//
LOCUS       DATDNM010000022         2887 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_750870, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000022 DATDNM010000000
VERSION     DATDNM010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2887
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_750870"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            287..847
                     /locus_tag="VI413_00385"
     CDS             287..847
                     /locus_tag="VI413_00385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY6913105.1"
                     /translation="MKLYIKYMVSARCKMAVKEELKKLGLHFIVVDLGEVEIMETISL
                     EQRELLKKGLLDAGLELMDDKRAVLIEKIKNAIVEMVHYTDEPLKINFSDYLSEKLKH
                     DYTYLANLFSEIQGTTIEHFIINHKIERIKELIIYDELNITEIAWKMNYSSVAHLSNQ
                     FKKVTGLSPTHFKQLKNKRRNQIEDI"
     gene            898..>2887
                     /locus_tag="VI413_00390"
     CDS             898..>2887
                     /locus_tag="VI413_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6913106.1"
                     /translation="MERTKTHESQYASRLIEASLDPLITIDIDGKITDMNEAKVNITG
                     VDRGKLIGSNFFDYFTDPEKARFVCQQVFANGTVEDLPLTFCHLNGKMTDVLFNGSVY
                     KDNAGNVLGAVLVGRDITEQKWAVELRAADKELAFQNDEKEKRAAELIIANKELVYQN
                     EEKEKRAAELIVANKELIFQSEEKEKRAAELIIADKELEFQTKEKKKRAAELKIADKE
                     LEFQNEEKEKRVTENKELEELSYSLKLASQYARSLIEASLDPLFTISPDGKITDMNNA
                     SVNITGVSRENLIGTDFFNYFTEPQKARQVYQEVFAKGFVANYPLTITDGKLTDVLFN
                     GSVYKDEKGAVLGAVVVARDITEQKRIAKDLNEAIVFAEMATEIAEAAKDKAESSTLT
                     AENAVKAKQQFLSNMSHEIRTPMNAIIGFTKVLLKTEMTAKQKEYLTAIKLSGDALIV
                     LINDILDLAKVDAGKMTFEQVPFKLSVSIAAMLHLFESKIWEKNLLLIKEYDDRIPEV
                     LLGDPVRLHQIILNLVSNAVKFTSTGSITVSVRLLSEDDEKATIEFAVADTGIGVPEN
                     KIDKIFDNFQQASSGTSRLYGGTGLGLAIVKQLVETQGGKVIVKSEEGKGSTFSFTLS
                     FQKTTEEAEIVDEIESADYEIKNINVLVAEDIPLNQLLM"
BASE COUNT         1017 a          479 c          636 g          755 t
ORIGIN      
        1 ttattgcaaa tataaatgat tctattcttc aggctgttac ataacttttg atattactta
       61 caaaattcac acattaaaga atcatctgta gttgaaaacc taaattcatt cgtcattcaa
      121 taaaaataaa cgaaagacga gaaagcttta ccattatatt aaaatcaatg tatatagaaa
      181 caccttagtt taaaatgtgt gaattatgta acttattttc aataaattgt aatctttaca
      241 caataaacgt gcgtaccttt gagcgtaact ctaaaatgga attattttga aattatatat
      301 aaaatatatg gtgagtgccc gttgtaaaat ggccgtgaaa gaagagctga aaaaacttgg
      361 ccttcacttc attgtagtcg acctgggcga agtggagatt atggaaacca tttcgttgga
      421 gcaacgtgaa ctattgaaaa aagggttgtt ggatgcagga ctcgaattga tggatgacaa
      481 gcgggcggta ttgattgaga aaatcaaaaa tgctattgta gaaatggtgc attacaccga
      541 tgaacccctc aaaataaatt tttccgatta cctgagtgaa aaattaaaac atgattacac
      601 ctatctggct aatctttttt ctgaaattca gggaactacc atcgaacatt ttattataaa
      661 ccacaagatt gaacgaataa aagaactcat tatctacgat gaattgaata ttaccgaaat
      721 tgcgtggaaa atgaattaca gcagtgtggc ccatctttcc aaccagttta aaaaagtaac
      781 cggtctttcg ccaacgcatt tcaagcaact gaaaaataag cggagaaatc agatagaaga
      841 catttaaaac agcagtaagc ggtaagcaga aaaaaataaa aagtaattag aaaaaaaatg
      901 gaaagaacaa agacacatga atctcagtat gccagcagat taattgaagc cagcctggat
      961 ccgttgataa ccattgatat cgatgggaaa attacggata tgaatgaggc aaaggtgaat
     1021 attacaggcg ttgatcgcgg aaaattgata ggttccaatt tctttgacta tttcaccgat
     1081 ccggaaaaag ccagatttgt ttgccagcaa gtgtttgcca atggtacggt tgaggatttg
     1141 ccacttacat tttgccactt aaacggcaaa atgaccgatg tactgttcaa tggatcggtt
     1201 tataaagaca atgcaggcaa tgtacttggc gctgtattgg tgggaaggga tattacagag
     1261 cagaaatggg ctgttgaatt gcgcgcggct gacaaagagc tggcttttca gaatgacgaa
     1321 aaagaaaagc gtgcagcaga attgattatt gccaacaaag agctggttta tcagaacgaa
     1381 gagaaagaaa agcgcgcagc cgaattaatt gtggcaaata aagaacttat ttttcaaagc
     1441 gaagaaaaag aaaaacgcgc tgcggagttg attattgctg ataaagaact cgaatttcaa
     1501 accaaagaaa aaaagaaacg cgctgcagaa ttaaaaattg ccgacaaaga actcgaattt
     1561 cagaacgaag aaaaagaaaa acgggtaact gaaaataaag aacttgaaga attaagttat
     1621 tcgttgaaat tggcttcgca gtatgccaga agcttgattg aagccagcct ggacccttta
     1681 tttaccatca gtcccgacgg aaaaataacg gatatgaata atgcatcggt aaatataaca
     1741 ggggtgtcgc gtgagaattt aataggaaca gatttcttca attatttcac cgaaccacaa
     1801 aaggcgcggc aagtgtatca ggaagttttt gccaaaggct ttgtggccaa ttatccgctc
     1861 accatcacgg atggaaaact gacggatgtt ttatttaatg gctcggtgta taaagatgaa
     1921 aaaggagctg tgcttggcgc agtggtggtg gcgcgtgata ttaccgagca aaaacgcatt
     1981 gcaaaagacc tgaatgaagc cattgtgttt gccgaaatgg ctactgaaat agctgaagct
     2041 gccaaagata aagccgaaag ttcaaccctc acagccgaaa atgccgtgaa agcaaaacag
     2101 cagtttttgt cgaatatgag tcacgaaatc cggacaccaa tgaatgccat tatcgggttt
     2161 acaaaggtgt tgctgaaaac ggaaatgacg gccaaacaaa aagaatatct tacggctatt
     2221 aagttgagcg gcgatgcgct gattgttctt ataaacgaca ttctggattt agccaaagta
     2281 gatgccggaa aaatgacttt cgagcaggtg ccgtttaaat tatcggtttc cattgcagcc
     2341 atgttgcatt tatttgaatc caaaatctgg gaaaaaaacc tgctgctgat taaagaatac
     2401 gacgatagaa ttccggaagt attgcttggc gacccggttc ggttgcatca aattatcctg
     2461 aatctagtga gcaatgctgt caagtttacc tctacaggct ccattacggt gagtgtccgg
     2521 ttgttgagcg aagatgatga aaaagcaact atcgaatttg cagttgcaga tacgggcata
     2581 ggcgttcctg aaaataaaat tgataaaata tttgataact tccaacaggc ttccagcggt
     2641 acttcccgct tgtatggagg caccgggtta gggttggcca ttgtaaaaca gttggtggaa
     2701 acgcagggcg gaaaagttat tgttaagagc gaagaaggca aaggttcaac ctttagtttt
     2761 acgttgagtt ttcagaaaac aactgaagag gctgaaatcg ttgatgagat tgaaagtgcg
     2821 gactatgaaa ttaaaaatat aaatgtgttg gtggcagaag atattccgct taaccaatta
     2881 ttgatga
//
LOCUS       DATDNM010000023         2432 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_110207, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000023 DATDNM010000000
VERSION     DATDNM010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110207"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1429
                     /locus_tag="VI413_00395"
     CDS             <1..1429
                     /locus_tag="VI413_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007211416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6913107.1"
                     /translation="TEKGNYYLNLAREQIARLSFVATQLLDFQKVDAGKGQIFLVMVD
                     IVQLVRNRVSMFEASARNKQLHFSFESSESSYTTAVDELKIEKVVDNLLSNAIKYSFT
                     NNQIDVKLTLSEKEWELEVKDYGVEISDLDQSKLFKEFYRADNAINSKIVGSGIGLLL
                     VKNYVSMHNGKVELISDKNTGTIFKIIIPHGVVSEVKVIDPKVIECESVNSEIAENTD
                     DVATADKKIQVLIVEDNNDLQNFLKYAFESKYKVSVASNGKEAWDSIQKKLPDLVISD
                     IMMPEMDGFTLCKLIKSTFDTSHIPVILLTALSDQTNQLEGLKLGADDYLTKPFDVTL
                     LKQRINNIISNREVVRSKMMKMIRQTDTNEPILTNEYNDQFVKKALAVVRENIANCDF
                     GKDEFASALNSSPSLLYKKIKTLTGQSPVDFIKFIRLDYSVELLKTRRFTITEVSEQC
                     GFSSVGYFSTVFKKHYGKSPTDTLE"
     gene            1728..>2432
                     /locus_tag="VI413_00400"
     CDS             1728..>2432
                     /locus_tag="VI413_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006799062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endo-1,4-beta-xylanase"
                     /protein_id="HEY6913108.1"
                     /translation="MKVKLIAVLLLTATLNSAHAKSPSKSNNLKDAFKNKFLIGAALN
                     RGQYAGLDTQATKVITTHFNAIVAENCMKSENLQPEEGKFVFDEADQFVEFGLKNHMW
                     ITGHTLIWHSQAPRWFFVDKDGKEVSREVLIERMKNHIYTVVKHFKGKVKGWDVVNEA
                     ILDNGDYRDSKFYKIIGKDFIKLAFQFAHEADPNAELYYNDYSMFIPEKRNGVVKMVK
                     EIKNQGGRVDAIGMQGH"
BASE COUNT          830 a          394 c          499 g          709 t
ORIGIN      
        1 taccgaaaag ggaaactatt atttaaattt agcccgtgag caaattgccc gcctttcgtt
       61 tgtcgccact caattgctcg attttcagaa ggttgatgcc ggaaaaggac aaattttttt
      121 agtgatggtg gatattgtgc agttagtgag aaacagggta agcatgtttg aagcctcggc
      181 acgaaataaa caattgcatt tcagtttcga aagttcagaa tcctcttata ctactgctgt
      241 agatgaactg aaaattgaaa aagttgtgga taacctattg tcgaatgcca ttaaatattc
      301 gttcactaat aaccaaatag atgtaaagtt aacgctttcg gaaaaagaat gggagctgga
      361 agtgaaggat tacggggttg aaatttcgga tcttgatcaa agtaaattat ttaaagaatt
      421 ctaccgcgca gataatgcca taaactcaaa aattgtgggt tccggaatag gattgttgtt
      481 ggtgaaaaat tatgtatcca tgcataatgg caaagtagaa ctgattagcg ataaaaatac
      541 cggaacaatt tttaaaataa ttatacctca tggtgttgta tcggaagtaa aggtaattga
      601 tcccaaagtg attgagtgtg aatctgtcaa ctcagaaatt gcagaaaaca ccgacgatgt
      661 cgccacggct gataaaaaaa tacaggtgtt gattgttgag gacaataacg atctgcagaa
      721 tttcctgaaa tacgcctttg agtcgaagta taaggttagt gttgcaagta acggtaaaga
      781 agcctgggat agcattcaaa agaaattacc ggatttggtt atttcagaca taatgatgcc
      841 cgaaatggat ggttttacat tgtgtaagct cattaagtct acttttgata cttcgcacat
      901 tcctgttata ttactaacgg ccttaagcga tcagacgaat caattggaag gtttgaaatt
      961 aggtgccgac gattatttga ccaagccttt tgatgttact ttgctcaaac agcgtatcaa
     1021 taacattatt agtaaccggg aagtggtcag gagcaagatg atgaaaatga ttcgtcaaac
     1081 cgacacaaac gaacctatcc tgacgaatga gtataacgat cagtttgtga agaaagcatt
     1141 ggcagttgta agggaaaaca ttgctaactg cgattttggg aaagatgaat ttgcgtctgc
     1201 attaaattcg agtccttcgt tgctgtataa gaaaattaaa acacttacag gacaatcgcc
     1261 ggttgatttt atcaaattca ttcgattgga ttattcggta gaactgctca aaacacgaag
     1321 atttacgatt accgaagtta gtgaacaatg tggattctcc agtgtaggct attttagcac
     1381 tgtgtttaag aagcattatg gcaaatcacc aaccgatact cttgaatgaa actcatgtaa
     1441 ataattcgat ccaacattta acaagacaaa tccttgcgaa aaaatattaa ggctgacaga
     1501 tagttcagcc tttttttatt tgatattagc tcaattctga atttttgttg aaaattaact
     1561 gcgaagtcgt aataattatc cgaaattgaa aattcagtat ttattattga atcctgaata
     1621 attcaatctg ctttaatttt gtacaatctg cttttcccag aataaagcag tagataaaca
     1681 aatcatcgta ttttcacaga taacattatt caactaattt cccgaaaatg aaagtaaaac
     1741 tcattgctgt attattgctt acggcaacct taaacagcgc tcacgcaaaa tccccttcaa
     1801 aatcaaataa cctgaaagat gccttcaaaa acaagtttct tattggagcg gcacttaacc
     1861 gtggacaata tgccggactt gatacacagg ccactaaagt tataaccact catttcaatg
     1921 ccattgtagc cgaaaactgc atgaaaagtg aaaaccttca acccgaagaa ggcaagttcg
     1981 tttttgatga agcggatcag tttgtcgagt ttggattaaa gaaccatatg tggattacag
     2041 gccacacgct gatatggcac tcgcaagctc cccgttggtt ttttgtagat aaagacggaa
     2101 aagaagtatc acgcgaagtg ttgattgagc gaatgaagaa tcacatttat acggtggtta
     2161 aacattttaa aggaaaagta aaaggttggg atgttgtgaa tgaagcaatt cttgataatg
     2221 gtgattacag agatagtaag ttctataaaa ttattggaaa agactttatc aaactggctt
     2281 ttcagtttgc gcatgaagcc gatccgaatg ctgaattata ttataacgac tattccatgt
     2341 ttattcccga aaaaagaaat ggagtggtaa aaatggttaa agagatcaaa aatcagggag
     2401 gcagggttga tgctatcggg atgcagggac at
//
LOCUS       DATDNM010000024         2878 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1712029, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000024 DATDNM010000000
VERSION     DATDNM010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2878
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1712029"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..371)
                     /locus_tag="VI413_00405"
                     /pseudo
     CDS             complement(61..371)
                     /locus_tag="VI413_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007215751.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide-stimulated promoter family
                     protein"
     gene            complement(451..1524)
                     /locus_tag="VI413_00410"
     CDS             complement(451..1524)
                     /locus_tag="VI413_00410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HEY6913109.1"
                     /translation="MMKKIVIFGLIVCSLCSIYQPVSGQKNPKNVVFLIGDGMGLAQI
                     YAGMVANNNKLNLERCTYSGFSKTYSANKFTTDSGAGGTALACGVKTKNGMIGMSPDS
                     VAVQSILELSSHNKLSTGIVVACAVTHATPASFIAHQVNRNMYDEIATDYVKTDIDVF
                     IGGGRKYFEDRNDGRNLTNELKAKGYQVAYNLDDVKAIKTGKLAGLLYEDQNPNMPER
                     GTMLTDATMAAINVLDDNKKGFFLMVEGSQIDWAGHDNNARQVVKEMLDFDQTIGRVL
                     DFAKKDGNTLVIITADHETGGLALLNGKFGSDEMKAVFTTKDHSGIPVPVFAYGPGAE
                     NFSGFMENISFKTKLEKLLKLKK"
     gene            complement(1550..1867)
                     /locus_tag="VI413_00415"
     CDS             complement(1550..1867)
                     /locus_tag="VI413_00415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEY6913110.1"
                     /translation="MEKLFYSISEVAAMFNVNQSNLRFWEKEFKQLSPKRNAKGTRFY
                     SPDDIQVIKQIIYLVSEQKLTLDGAKRKLSQKKDAIAKQQEVVERLKAIRKELIGIAN
                     ALS"
     gene            complement(1904..>2878)
                     /locus_tag="VI413_00420"
     CDS             complement(1904..>2878)
                     /locus_tag="VI413_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEY6913111.1"
                     /translation="RSFIDLYTVRKRNQVEYMLGMSDYYFPIFEQVLSANNLPLELKY
                     LSIIESALNTTIVSHMGAAGLWQLMIGTGRMYGLEINSLIDERLSPAKATNAAAHFLK
                     DLYSIYGDWHLVIAAYNCGPGNVNKAIRRAGGKRDYWAIYPYLPRETRGYVPIFIAAN
                     YSLNYAAEHNLCPSVVSMPAITDTIVVRQRVHLEQIASVLNLPIEEIRLLNAQYRKDI
                     IPGNIKPYSLCLPLNYANTFISKFDEIVAYKADSLINNRRSEIEIPQVAPISLGGSGK
                     VLYHKVKRGQTLSDVAAKYGISVTKLKKWNHIRRSTIQVGQRLKIIKG"
BASE COUNT          854 a          633 c          466 g          925 t
ORIGIN      
        1 taaagaaaaa attaggattg aaataagaat ctcagcgtag aataaaaaag cctttgaaac
       61 ttattgtttc aaaggctttt tctttagcaa atgtcttata aaatcaaccg gataataaat
      121 aatcatgcgt ggacctgaat atcgcatgat ttccctgatt ctctctctca tttccgccgt
      181 gtaacaatgc accgaacaac ttttacaagc cgttttagcg tctccaaacg gacatttgac
      241 aatcgttcat atgcatatac tttcagctgc tcacagccac ggcatagctc caggctagta
      301 ccgtgattat tccggcaata aagccgtatc ataaactcaa cagtatgctt ttccgaatca
      361 attcttctca ttaaagttct aatcttgtaa aaaaaaggtg agataattta ctatctcacc
      421 cctgttacac tctccttcaa ctataaagtt ttatttcttt agcttcaata acttttcaag
      481 ttttgttttg aaactgatat tctccataaa tccactgaag ttttcagcac caggaccata
      541 tgcaaaaacc ggaaccggaa tccccgaatg atcttttgta gtgaaaacag ctttcatttc
      601 atctgatcca aattttccat tcaacaatgc cagtccaccc gtttcatggt ctgcagtaat
      661 aatcacgagc gtatttccgt ccttttttgc aaaatccaac acacgtccaa ttgtttgatc
      721 aaaatcaagc atttctttta ccacctggcg tgcattatta tcatgacctg cccagtcaat
      781 ttgcgaacct tctaccatca agaaaaatcc ttttttatta tcgtccagga cattaatagc
      841 tgccattgta gcatccgtta acatagttcc ccgctctggc atgtttggat tttggtcttc
      901 gtaaagcaaa cctgcaagtt tgccagtttt tatggctttt acatcatcca aattatatgc
      961 aacctgatag cctttggctt ttagttcatt cgtcaggttg cgcccatcat ttctgtcttc
     1021 aaaatacttt cgacctcctc caataaagac atcaatatca gttttgacat aatcggtagc
     1081 aatttcgtca tacatgttcc ggtttacctg atgagcaata aaactggccg gagtcgcgtg
     1141 agttactgca cacgcaacta caatacccgt tgaaagttta ttatggctgg aaagctccaa
     1201 gatcgattga acagctacgg aatcaggtga cataccaatc attccgtttt ttgttttcac
     1261 accacatgcc agtgccgttc caccggctcc tgaatctgta gtaaacttat tggctgagta
     1321 ggttttagag aaaccactat aagtacagcg ttccagattg agtttattgt tgttggcaac
     1381 catacctgca tagatttgtg caagacccat tccgtcacca ataagaaata cgacgttttt
     1441 gggatttttc tgacctgata caggctgata aatgctacaa agcgaacaaa ctatcaagcc
     1501 aaaaattacg attttcttca tcattttact ttttcaaaat gaatatccat taagacaagg
     1561 catttgctat gcctataagt tcttttctta ttgcctttaa acgctcaaca acttcttgtt
     1621 gtttggcaat tgcatctttc ttttgactta attttctttt ggcaccatct aatgtcagtt
     1681 tctgttcgct gactaaatag attatttgtt tgataacctg aatatcatcg ggcgaataaa
     1741 agcgcgtccc tttcgcatta cgctttggac taagctgctt aaactccttt tcccaaaaac
     1801 gcaaattcga ttgatttacg ttgaacatag cagcaacttc ggaaatagaa tagaagagtt
     1861 tttccattat aacgcaaatt gtcgattaac aatatctgat tctttaacct ttaattattt
     1921 tcaatcgctg tccaacctga atagttgacc tgcgtatgtg attccatttc ttcagttttg
     1981 ttacagaaat accatatttt gcagcaacat cacttaatgt ttgacctctt tttaccttat
     2041 gataaagaac ttttccagag ccgcccagtg atattggcgc aacttgtgga atttcaatct
     2101 ctgatcttcg attatttatc agcgagtcgg ctttataagc cacaatttca tcaaacttac
     2161 tgataaaagt attagcataa ttcaatggta aacacaatga atatggtttt atattccccg
     2221 gaataatatc tttccgatac tgagcattca gcaaacgtat ttcttcaatc ggcaaattca
     2281 atactgaagc aatttgttcc aagtgaacac gttgtcgcac cacaattgta tctgtaatag
     2341 ccggcatgct tacaactgaa ggacataaat tatgctctgc ggcatagtta agcgaataat
     2401 ttgcagcaat aaaaattggg acataaccac gggtttcgcg aggaagataa ggatagattg
     2461 cccaataatc acgctttcct cctgcacggc gaatagcttt gttcacattt ccgggaccac
     2521 aattatatgc cgcaatgact aaatgccaat ctccgtaaat cgaatataaa tctttcagaa
     2581 aatgagctgc tgcattagtt gctttcgcgg gtgataaacg ctcatctatc aaactgttta
     2641 tctcaagtcc gtacatgcga ccggttccga tcatcagctg ccataacccg gctgctccca
     2701 tgtgtgaaac aatggttgta tttagtgctg attcaattat agacaggtat ttcagttcca
     2761 atggcaaatt attagcactc aacacctgtt caaatatcgg gaaataataa tcactcatcc
     2821 ccaacatgta ttcaacctga tttcgtttgc gaacagtata taaatcaatg aacgagcg
//
LOCUS       DATDNM010000025         3265 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1605368, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000025 DATDNM010000000
VERSION     DATDNM010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1605368"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(546..2357)
                     /locus_tag="VI413_00425"
     CDS             complement(546..2357)
                     /locus_tag="VI413_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009037425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6913112.1"
                     /translation="MKKSITKVLFLLAVSLAGITSAQTTPQIINVEGRKTTSLDGAWR
                     TIVDPFENGYYDYRRKPMKDGYGSDKDIVDKSVLQEYNFATDRTLFVPGDWNTQRPEL
                     YYYEGTVWYRNRFQYETKDNKRVFLHFGAVNYEAIVFVNGKEIGQHVGGFTPFNFEVT
                     GMLKNGENSLVVKVDNKRKLDAVPTLNSDWWNYGGITRQVTLIETPATFVRDYYVQLK
                     KSDKNIINGWVQLDGNQPGKTVKVEIPELKISLQLTPDTKGYATFEVKAKPTYWTPGN
                     PKLYAVNITVGDETVSDEIGFRTIETKGTQILLNGKPIFCRGICIHEEAAFRNGRAYS
                     KEEDITLLQWAKDMGCNFVRLAHYPHNEQMIRQAERMGLLVWSEIPVYWTIQWGNPET
                     YKNAEAQLTDMITRDKNRTNIIIWSIANETPHGAERLAFLTRLATKARELDPVRLVGA
                     AMEKEEVKPGIMTVNDELSKVTDVLSFNQYVGWYDGLPEKCDRVNWTFSEQKPVIVSE
                     FGGEALYGLKGGKTERFTEDYQEDLYIRSVNMLKRIPGLAGTTPWILKDFRSPRRQLR
                     DMQDDFNRKGVISDKGQKKRSFYVMKKWYEELKEQYK"
     gene            complement(2560..>3265)
                     /locus_tag="VI413_00430"
     CDS             complement(2560..>3265)
                     /locus_tag="VI413_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004317107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HEY6913113.1"
                     /translation="KTADNEEVPQANCIDNTISTEEKAMGWKLLWDGKTTEGWRGAKL
                     TAFPEKGWKTENGILKVLSSNGGESTNGGDIVTTRKYKNFELSVDFMITKGANSGIKY
                     FVDTDLNKGEGSSIGCEFQILDDQNHPDAKLGVKGNRKLGSLYDLIPAPENKPFRAGF
                     FNTARIVVKGNKVEHYLNDVKIIEYERGTQMWKALVNYSKYAVWPTFGEAAEGYILLQ
                     DHGNEVSFKNIKIKEL"
BASE COUNT          829 a          700 c          673 g         1063 t
ORIGIN      
        1 gaataaaatt catttagaac ataacttttt ggtttaaatg tctgttttat atgtcactta
       61 atatagtctc gtattaaaat gtatatatca cataaacatg ttttataaac ctattgcatt
      121 caagttattt aatagcacca ttgcttaatt caatttacgt tttgctaaat ttacgctaaa
      181 gacgggataa actcattttt tattgccatt ctttcattca cttttctctt aattttgcga
      241 tttgcaaaca tactaaaaaa aatgataggt taactaaaaa gttagaataa attttaaata
      301 atctgaataa aaataaaaga aaaataaaac cgccccaacc agaagggtag gggcgattac
      361 caaaacaggg atagtgaaca actatagaaa atattgtttt acataacata actgataatt
      421 tcgtcgctcc acatgtgtct ggggtctgaa cctgcaaacc caccggatac gaaacaaggc
      481 aaaaccaaat ctgtatttac agattcaatt ttgccttgcc tttatctgga attgcggtat
      541 gttgattatt tatattgctc tttcagctct tcgtaccatt ttttcataac gtagaacgac
      601 ctttttttct ggcctttgtc ggaaataact cctttgcggt taaaatcgtc ctgcatatcg
      661 cgcaactggc ggcgtggtga acggaaatct ttcagaatcc acggagtagt accggccagt
      721 ccgggaatac gcttgagcat atttacgcta cggatataaa gatcttcctg ataatcttcg
      781 gtaaagcgtt cggtttttcc gccttttaaa ccatacaatg cttcgccgcc aaactcgctg
      841 acaataaccg gtttttgttc cgaaaaagtc cagtttaccc ggtcgcattt ttcgggcaaa
      901 ccatcgtacc aacccacgta ctggttaaag ctgagcacat cggttacctt actgagttca
      961 tcgttcacgg tcattatccc gggtttcact tcttcttttt ccatggctgc tccaacgagt
     1021 cttaccggat caagttcgcg ggctttggtt gccaaccggg tgagaaatgc cagacgttcg
     1081 gcaccgtgcg gggtttcgtt ggcaatagac catataataa tgttcgtgcg gtttttgtcg
     1141 cgtgtaatca tatcggtcag ttgtgcttcg gcatttttat aggtttccgg attgccccac
     1201 tgtatagtcc agtaaacagg aatttccgac cataccaaca gccccatgcg ttcagcctgc
     1261 cggatcattt gctcgttgtg aggataatgt gccaggcgca cgaagttaca gcccatatct
     1321 ttggcccatt gcaagagggt aatgtcttct tctttggaat aggccctgcc attgcggaaa
     1381 gcggcttctt cgtgaataca aataccgcgg caaaaaatag gtttgccgtt caacagtatt
     1441 tgtgtgcctt tggtttcaat ggttctaaac ccgatttcat cactaaccgt ttcatctccc
     1501 acggtaatat tgacggcata tagttttggg ttcccgggcg tccagtaagt tggttttgct
     1561 tttacttcaa acgtggcgta gcctttggtg tcgggagtta gttgtagact gattttcaat
     1621 tcagggattt ccaccttcac ggttttgccc ggttggttac catccagttg cacccagccg
     1681 ttgatgatgt ttttatccga ttttttgagt tgtacgtaat aatcgcggac gaaagttgcg
     1741 ggtgtttcta tgagtgttac ctgacgtgta atgccgccat aattccacca atcggaatta
     1801 agggtaggca ctgcatccag tttccgtttg ttatctactt tcactactaa cgagttttct
     1861 ccatttttca gcatgccggt cacttcgaag ttaaacggag tgaaaccacc tacgtgttgg
     1921 cctatttctt tgccgtttac aaaaacaatg gcttcgtaat tcacggctcc gaagtgcagg
     1981 aatacacgtt tgttgtcttt tgtctcgtat tggaatctgt ttctgtacca aacggttcct
     2041 tcataataat acaattccgg acgttgggta ttccagtcgc cgggaacaaa caaggtgcgg
     2101 tcggtagcga aattatattc ttgtaatacg cttttgtcca ctatgtcttt gtcggatcca
     2161 taaccatctt tcatgggttt gcgacgataa tcataatagc cgttttcgaa cggatcgaca
     2221 atggttctcc acgctccatc cagggaggtc gttttgcgtc cttccacatt tataatctgg
     2281 ggagtagttt gggctgaggt aatcccggcc agggatacag ccaacagaaa cagtactttc
     2341 gtaatcgatt ttttcattgt attattgatt ttacgttgat gttgcagtgt gtgattgaca
     2401 atgtgattgt gactggcaaa agtaataaaa tttaacctgt gtacaagcgg attaaccaca
     2461 acaaaaattt agtttcctgc tcaaaataaa acggtgagaa aacccgatca ggatttcctc
     2521 accgcttgca gaaagtgtgg gattatgaat tgtgtggtat tataattctt tgatttttat
     2581 gtttttaaac gaaacttcgt tgccgtggtc ctgtagcagg atatatcctt ctgcagcttc
     2641 gccaaaggtt ggccaaacgg catacttgct gtaatttaca agggctttcc acatttgtgt
     2701 gccgcgctcg tattcaatga ttttcacatc gttcaggtaa tgttccacct tgttgccttt
     2761 taccacaatg cgtgcagtat tgaaaaatcc agctctgaat ggtttgtttt cgggggcagg
     2821 aatcaaatcg tacaacgaac caagcttacg gttgcctttt acaccaagct ttgcatcggg
     2881 gtggttttgg tcatcgagaa tctgaaactc acaaccgata gacgaacctt cgcctttgtt
     2941 caggtcggtg tcaacgaagt atttgatacc gctgtttgct cctttggtaa tcataaagtc
     3001 gacagacaat tcgaagtttt tgtatttacg ggtggtaaca atatcacccc catttgttga
     3061 ttcgccacca tttgagctaa gcactttcag tattccgttt tccgttttcc agcctttttc
     3121 agggaaagca gtaagtttgg ctccgcgcca gccttcggtt gtttttccat cccaaagcag
     3181 tttccaaccc atggcttttt cttcggtaga aatggtatta tcgatacagt tagcctgtgg
     3241 tacttcctcg ttatctgctg ttttt
//
LOCUS       DATDNM010000026         2780 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1925728, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000026 DATDNM010000000
VERSION     DATDNM010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2780
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1925728"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1828)
                     /locus_tag="VI413_00435"
     CDS             complement(<1..1828)
                     /locus_tag="VI413_00435"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEY6913114.1"
                     /translation="MNLVWSIILIPAVAICLIPFLKLKGKAIAVYAAVSLIAILTSYV
                     ASQSLTGQPFNLTLKGSLVTGDIRLQVDALSAWFMLIINFAFLTGGFYGLFYMKAYSN
                     QPNNLSLHGILFVLLYAALISLCTIQNSMAFLIAWEIMALSAFLSIVFEHEKTATVKA
                     GINYLIQSHVSILFLMIGFIWVASKTGSYDFSSIQAYSGKNSSAVSLMLYLFFFIGFA
                     IKAGFVPFHTWLPYAHPAAPAHISGIMSGVLIKIGIFGILRMLLLIKLDYTTIGGIIL
                     AISLISGVYGVMLAILQHNLKKLLAYHSIENIGIIGIGIGLGCIGLGTNNPVLSSLGF
                     AGALLHTLNHSLFKSLLFFTAGNVYQATHTLDIEKLGGLVKKMPQTTILFLVAALAIC
                     GLPPFNGFISEFILYTGLFNSFHNATIVSVIGIITTISGLVLIGGLALLCFTKAFGVV
                     FLGSARHVFHHEIKERPFLQLLPLYFIAAFIISIGLFPNVFLDLLIKPVQLFTGLQQL
                     PFISFRGNGIETLLTISRTSWYVIALVLTLLGIRKLVSRKKVPAVSSTWNCGYTVPTS
                     KLQYTASSFVKTYSKLFGMVFLISKKREKVLGIFPGAAHLETH"
     gene            complement(1825..>2780)
                     /locus_tag="VI413_00440"
     CDS             complement(1825..>2780)
                     /locus_tag="VI413_00440"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEY6913115.1"
                     /translation="SLLFFTAGNVYQATHTLEIEKMGGLVKKMPQTAFLFLIAALAIS
                     GLPPFNGFISEFILYTGLLGLMQHASTISLLGIITTISGLVVIGGLAIICFTKAFSVV
                     FLGSPRHEFHHEVKERSRYQLAPLYFIVALIVSIGLFPKLFLDLLIKPVQLFTGLQQP
                     PFTSFQGNGIEILLAVSKGSLYLILAVLILWIIRKLVVSRQTSKISTTWGCGYTAPNA
                     KIQYTGSSFSKTYSKLFGMIFQIKKKETEVQGIFPTQAHLETSTYDKIEKWLIDYPII
                     NVKHFLGRFLFIQNGRVQSYVSYGIVFIVFILLLTIFNIVL"
BASE COUNT          887 a          588 c          580 g          725 t
ORIGIN      
        1 gatgcgtttc caaatgggct gcacccggaa atatacccag tactttttct cttttttttg
       61 atataagaaa aaccatgccg aacaatttgc tataagtctt tacaaacgaa ctcgcagtgt
      121 attggagttt agacgttgga actgtatatc cgcaattcca tgttgatgaa acagcgggta
      181 cttttttccg tgagactaat ttccggattc ccaacagggt taaaaccagc gcaataacat
      241 accagctcgt acgactgatg gtcagtaaag tctcgattcc atttcccctg aacgaaataa
      301 acggaagttg ctgcaaacct gtgaacaatt gaaccggttt aatcaataaa tctaaaaata
      361 cgttggggaa taacccaatg gaaataataa aagctgctat aaagtaaagc ggcaacaatt
      421 gcaggaatgg acgctctttt atctcgtgat gaaagacatg tctggcactt cctaaaaaca
      481 ctactccgaa agctttggtg aaacacaaca gggccagtcc tccaattagt accagcccgg
      541 aaatggtagt tattattcca attacagaga cgatagtagc attatgaaaa gaattgaata
      601 atccggtgta cagtataaac tccgaaatga aaccattaaa cggtggcaat ccgcaaatgg
      661 ccagtgctgc aacgagaaac aaaatagttg tctgaggcat tttcttaacc aatccaccca
      721 gtttttcaat gtccagcgtg tgtgttgcct gatagacatt gcctgctgta aagaatagca
      781 gggatttgaa aagcgaatga ttcaacgtgt gcaacaaggc tcctgcaaat cccaatgagc
      841 ttagtaccgg attgttcgtt ccaaggccaa tgcaccccaa cccgattccg attccgataa
      901 ttccgatatt ctcgatgctg tgataggcga gcaatttttt taggttatgt tgcagaatgg
      961 cgagcattac gccatacact ccggagatta aagaaattgc cagaatgatg ccaccgatag
     1021 tcgtgtaatc cagtttgata agcaacaaca tgcgaagaat gccaaaaatc ccgatcttaa
     1081 tcaatacgcc cgacatgatt ccagaaatat gggccggtgc cgccggatgg gcgtaaggca
     1141 accacgtgtg gaaaggtaca aaacctgcct tgatggcaaa accgataaag aaaaacagat
     1201 acagcattaa agaaacggca ctggaatttt tgccggaata agcctggata gaactgaaat
     1261 catagcttcc cgttttgctg gccacccaga taaatcctat catcaggaac aggatggaga
     1321 catgcgactg tatcaggtaa ttgatacctg cttttactgt cgctgttttc tcgtgttcga
     1381 aaacgatgct caggaatgca gaaagtgcca tgatttccca ggctatcaga aacgccatgc
     1441 tgttttgtat cgtgcaaaga ctaatcaaag ctgcataaag aagtacgaaa aggatgccat
     1501 gcaacgataa attgttcggc tgattgctgt atgccttcat atagaacagc ccgtagaaac
     1561 cacctgtcag aaaggcaaag ttgataatga gcataaacca ggccgaaagt gcatctacct
     1621 gcaaacgaat atcaccagtc actaaactgc ccttcaaggt caggttgaat ggttgccctg
     1681 ttaatgattg agaagctacg taacttgtca ggatggcaat cagactcaca gcggcataca
     1741 cagcaatggc tttccctttc aatttcagaa aaggaataag gcatattgct acggccggaa
     1801 taagtatgat gctccagact aagttcataa tacaatgtta aagatagtca acaacagaat
     1861 gaaaacgatg aacacaattc cataagaaac atacgattgc acgcgtccgt tttgaataaa
     1921 caggaaacgt cccaggaaat gcttcacatt tataattggg taatctatca gccatttttc
     1981 aattttatcg tatgtgctgg tttcaagatg tgcctgagtt ggaaaaatgc cctgcacctc
     2041 tgtttctttc ttctttatct gaaatatcat tccgaacaac ttgctgtaag ttttagagaa
     2101 cgaactgcca gtgtattgga tttttgcgtt aggagcggtg tatccgcaac cccaggtcgt
     2161 ggaaatttta cttgtttgtc tgcttactac cagtttccgg attatccaca gaatcagtac
     2221 cgccagtatt aaatacaaac tgcctttgct cactgccagt aatatctcaa tgccattccc
     2281 ttgaaatgag gtaaaagggg gttgttgcaa accggtaaat agttgaaccg gttttatcag
     2341 caaatctaag aataattttg ggaaaaggcc gatactgaca atcaaagcaa cgataaaata
     2401 taatggcgct aactgatagc gcgaccgttc ttttacttca tgatgaaatt cgtgtctcgg
     2461 gcttcccaaa aatacgacac tgaatgcttt ggtgaagcaa ataattgcca ggccgccaat
     2521 aaccaccaat ccgctgattg tggtgataat accaagtaac gatatggtag aagcatgttg
     2581 catcaacccg agaaggcccg tgtaaagaat aaattctgag ataaacccgt tgaaaggcgg
     2641 taacccggaa atggccaaag cagcaattaa aaacaagaat gcagtctgcg gcattttctt
     2701 taccagtcca cccatttttt ctatttccag tgtatgtgtt gcttgataaa cattaccggc
     2761 tgtgaaaaat agcagcgatt
//
LOCUS       DATDNM010000027         4756 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1071382, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000027 DATDNM010000000
VERSION     DATDNM010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4756
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1071382"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            280..1677
                     /gene="asnS"
                     /locus_tag="VI413_00445"
     CDS             280..1677
                     /gene="asnS"
                     /locus_tag="VI413_00445"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004816 - asparagine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEY6913116.1"
                     /translation="MSRTVIVDALKRTDFGAEVTIKGWVRTRRGNKNVSFIALNDGST
                     INNIQVVADNEKFGDEYLKPITTGACLSVTGKLVESLGQGQSVEIQAEKIEIYGIADP
                     ESYPLQKKGHTLEFLREIAHLRPRTNTFGAVFRIRHHMAMAIHRFFHERGFFYFHTPV
                     ITASDCEGAGQMFQVTTMNLYDLKKDETGQIDYSNDFFGKQASLTVSGQLEGELAAMS
                     MGSIYTFGPTFRAENSNTPRHLSEFWMIEPEVAFNEIEENMQLAQDFIQYCVKWALDN
                     CQDDLNFLCNMYDKELIERLQFVTENDFIRLPYTQGIEILEAAIAKGQKFEFPVGWGT
                     DLQSEHERYLVEQHFKKPVILTDYPKEIKSFYMKQNDDGKTVRAMDVLFPKIGEIIGG
                     SQREEDYEKLKTRAEEMGVPTKDIWWYLETRKFGTAPHSGFGLGFERLLLFVTGMSNI
                     RDVIPFPRTPNNAEF"
     gene            1960..3807
                     /locus_tag="VI413_00450"
     CDS             1960..3807
                     /locus_tag="VI413_00450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HEY6913117.1"
                     /translation="MDKTKTTELDNVVVRFSGDSGDGMQLTGTLFSNLSAILGNEIST
                     FPDFPSEIRAPQGTLGGVSGFQVHLGSSKIYTPGDDADVLVVMNPAALKVNAKAIKKG
                     GVIIYDADLFEKSGLSKAEFKTDNPFEELGISDTIQLIAAPLSTLTQNSLEGMGFDNK
                     TVLRSKNMFSLGLICWLFNRPIDQAIHFLENKFGKKPDILHANVKVLTDGYNYGNNLH
                     LTISTYLIDKSHETPKGTYTSISGNKATAWGLIAAAKKAGLELFLGSYPITPATDIMH
                     ELALRKDMGVKVIQAEDEIAGITSAIGASFAGSLAATSTSGPGLALKSEAIGLAVMTE
                     LPLVVIDVMRGGPSTGLPTKTEQTDLLQALYGRNGESPAVVMAANTPDDCFVQAYMAC
                     KIALEYMTPVILLTDAFIGNGTSLWKLPTLAELPEIKPNYAKKGTENYKVSDRDEETK
                     VRYWSIPGTEGFGHRNGGLEKDYYTGAISTDPQNHQKMVDTREQKINNISNVLPDVVV
                     EGSEDADLLVIGWGGTHGHLMSAVNSLNKKGQKIALAHFNYINPLPKNTVEMIQRYKK
                     VVVCELNSGQFATFLRSKVSGVEFLQYNKVQGQPFTVAELETDFAELLK"
     gene            3845..>4756
                     /locus_tag="VI413_00455"
     CDS             3845..>4756
                     /locus_tag="VI413_00455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEY6913118.1"
                     /translation="METTEATKTQYTAKDFKSDQYVRWCPGCGDYAVLSSVQKVMAEL
                     GIPPHETAVISGIGCSSRLPYYTSGYGLHTIHGRGAAVATGVKVANPKLSVWQITGDG
                     DCLAIGGNHFIHSVRRNVDINVILFNNQIYGLTKGQYSPTTKKGFVTKSSPFGTVERP
                     FRPAELTFGARGTFFARVLDVDLKTSQMAIMAAALHKGTSVVECLVNCVIFNDGAHGW
                     LAERETRADRVIILEHGKPMIFGKESNKGLVLDGFNLKVVTIGENGITEKDILVHDAT
                     CEDTTLQMKLALMEGPEMPIAMGVIRSV"
BASE COUNT         1489 a          922 c         1043 g         1302 t
ORIGIN      
        1 tggaaagaca ggatctattg gttaaatcct tcaacacgcc gctatctgga tcaggacaaa
       61 tcgacaaatg atattggctt ccgctgcgcc atgagtatga ttggcaacat tgagaaacaa
      121 aaaaaataat gaattgataa agatttttaa aagcacctgt tcagcgcgaa tatggtgctt
      181 tttgttttta atcaggttga ttttccaatg aaaattagta cttttgcagt ttaaaaattt
      241 cattttgata tttcaacaaa tccccataaa taaaatataa tgagcagaac tgttattgta
      301 gatgcactta aacgaaccga ttttggtgca gaagtgacta taaaagggtg ggtaagaacc
      361 cgccgtggta ataaaaacgt tagctttata gcgttgaacg atggttcaac tattaataat
      421 atccaggttg ttgctgataa tgaaaaattt ggcgatgaat atcttaaacc gattaccaca
      481 ggggcctgtt taagcgtaac cggaaaatta gtagaatcac tcgggcaagg ccagagcgta
      541 gaaattcaag ctgaaaaaat tgaaatctac ggaattgccg accctgaaag ttatccgttg
      601 cagaaaaaag gacacacgct cgaattcttg cgcgaaatag cccacttacg tccccgcacc
      661 aatacttttg gagcggtatt tcgtattcgc caccacatgg ctatggcaat tcatcgtttc
      721 ttccacgaac gtggattttt ctacttccac acaccggtta tcactgcgtc ggactgcgaa
      781 ggtgcaggac aaatgttcca ggtaaccacc atgaatttgt acgacctgaa aaaagatgaa
      841 acaggacaga tcgattatag caatgacttt ttcggaaagc aagccagctt aactgtttcc
      901 ggtcaactgg agggggaatt agccgctatg tcaatgggat ctatctacac atttggacca
      961 acattccgtg ctgaaaactc aaacacgcca cgccacttgt ctgagttctg gatgattgaa
     1021 ccggaagttg ctttcaatga gattgaagaa aatatgcaac ttgcgcaaga ctttattcaa
     1081 tactgcgtga aatgggcatt ggataactgc caggatgacc tgaacttcct gtgcaacatg
     1141 tacgacaaag aactgattga acgacttcag tttgttactg aaaatgattt cattcgtttg
     1201 ccatatacac agggaattga aattctggaa gcagccattg ccaaaggaca gaaatttgaa
     1261 tttccggttg gttggggaac agatttgcaa tcggaacacg aacgttacct tgtagagcaa
     1321 catttcaaaa aaccggttat tctgactgat tatccaaagg aaatcaaatc gttctacatg
     1381 aaacaaaacg atgatggaaa aacggttcgt gctatggacg ttttattccc gaaaattggt
     1441 gaaattatcg gagggtctca acgcgaagaa gattacgaaa agctaaaaac gcgcgcagaa
     1501 gaaatgggcg ttccaaccaa agatatctgg tggtatctgg aaacacgtaa attcggaact
     1561 gctccacact caggtttcgg actcggcttt gaacgcttgc tattgttcgt tacaggcatg
     1621 tcaaatatac gcgatgtaat tccttttcct cgcacaccga acaatgcaga gttctgattt
     1681 gttatttcat ccgacaatta tttagttgta attcccggac tgaaaaatag ctgcttgttt
     1741 gacaattttt cgggagtaga ttaatctaca tccaaattgt caggcaagca actttaataa
     1801 gcgggagttg ttttgaataa aaatacaggc aaaagggcat tattcagcaa aaataggcag
     1861 tttatgcatg ttttggttaa taaaattgca gttttaactt agaatgccta tatttgcaaa
     1921 cattgaaaat ttataatact actttattaa tattagaaaa tggataaaac gaaaacaacc
     1981 gaattggata atgtagtggt acgcttctct ggcgactctg gcgatggcat gcaactcaca
     2041 ggaacgcttt tttccaatct ttcggccatt ttagggaatg aaatctcaac tttccccgac
     2101 tttccctcag aaattcgtgc tcctcaagga actttaggag gcgtttctgg atttcaggta
     2161 catttaggtt ctagcaaaat ttatacaccg ggagacgatg ctgatgtatt ggtggtaatg
     2221 aatcctgcag cattgaaagt taatgcaaaa gcaataaaaa aaggaggagt aataatctac
     2281 gacgctgatt tattcgaaaa atcgggttta agtaaagctg aatttaaaac agataatcca
     2341 tttgaagaat taggtatttc tgatacaata caattgattg cggcaccgct ttccacactt
     2401 actcaaaata gcctggaggg aatgggtttt gataacaaaa cggtgttgcg aagcaaaaat
     2461 atgttttctc ttggtttgat ttgctggttg tttaaccgac caatcgatca ggctattcat
     2521 tttctggaaa ataaattcgg caaaaaaccg gatattctcc acgccaacgt aaaggtattg
     2581 actgatggct ataattacgg caacaatctc cacttgacta tttcaacata cctgattgat
     2641 aaatcgcacg aaacgccaaa aggaacatac accagcatta gtggaaataa agctacagcc
     2701 tggggattga ttgcggcggc caaaaaagca ggattggaat tattccttgg cagctatcct
     2761 attactcctg ctacagacat tatgcacgaa ctggctttgc gcaaagatat gggtgtaaaa
     2821 gtgatacagg ctgaagacga aattgccgga attacttcgg ctattggagc ttcatttgcc
     2881 ggtagtttgg ctgcaacaag cacttctggt cccggattgg cattgaaatc ggaagctatc
     2941 ggtttagccg tgatgacaga attacctttg gtagtgattg atgtaatgcg tggaggtcct
     3001 tcaacaggct tgccaaccaa aactgaacaa actgatttgt tgcaggcact ttatggccgc
     3061 aacggtgaaa gtccggctgt ggttatggct gccaacaccc ctgacgattg cttcgtacag
     3121 gcatacatgg cttgtaaaat tgcattagaa tacatgactc cggttatttt gcttactgat
     3181 gcctttatag gcaatggtac ttcgctatgg aagctgccta cattagcaga acttccagag
     3241 attaaaccga actatgcaaa aaaagggact gaaaattata aagtctcgga tcgcgatgaa
     3301 gaaactaaag ttcgctactg gagcattcct ggaactgaag gttttggaca ccgcaacgga
     3361 ggtttggaaa aagattacta taccggtgct atttcgaccg acccacaaaa tcaccagaaa
     3421 atggtggata cccgcgagca aaagataaat aatattagca atgtacttcc tgacgtggtt
     3481 gtggagggaa gtgaagatgc cgatttactg gttattggtt ggggcggaac acacgggcat
     3541 ttgatgagtg ccgttaattc gctgaacaaa aaaggacaaa aaattgcttt agctcatttc
     3601 aactatatca atccacttcc aaaaaatact gttgaaatga ttcaacgtta caaaaaagtg
     3661 gtggtttgcg aattaaatag cggacaattt gcaaccttcc tgcgttcaaa agtttccgga
     3721 gtggaatttc tccaatataa caaagtacag ggccagcctt ttactgtggc tgaattggaa
     3781 actgatttcg ccgaattatt gaaataacgg aacctgattg aatacaaaat aaatatttca
     3841 tattatggaa actacagaag caacaaaaac tcaatatact gccaaagatt ttaaaagcga
     3901 tcaatatgta cgctggtgcc cgggatgcgg agattacgcc gtgctcagct ccgtacaaaa
     3961 agtaatggca gaactaggta tacctccaca cgaaacagct gttatctcag gtatcgggtg
     4021 ttcatcacgc ttgccttatt ataccagcgg ttacggactg catactattc acggacgtgg
     4081 ggctgcagtg gcaaccggcg taaaggtggc aaacccaaaa ctatccgttt ggcaaattac
     4141 cggtgatggc gactgcctgg cgattggtgg taaccatttt attcacagcg ttcgtcgcaa
     4201 cgtggatatt aatgtgatac ttttcaacaa tcagatatac ggtctgacga aaggacaata
     4261 ctcgccgaca acaaaaaaag gatttgtcac caagtcgtct ccttttggaa ctgtagaacg
     4321 tccattccgc ccggcagagc ttacatttgg tgcccgtggc actttctttg cccgtgtact
     4381 ggatgttgat ttaaaaacct cgcaaatggc tattatggct gctgccctcc acaaaggcac
     4441 ttcggtggtg gaatgtttgg taaactgcgt tatttttaac gatggagcgc atggttggct
     4501 tgcagaaaga gaaacccgtg ctgatcgtgt aattattttg gaacacggca aaccaatgat
     4561 ttttgggaaa gagtctaaca aaggacttgt actcgatggt ttcaacctga aagtggttac
     4621 tattggcgaa aatggcatta ctgaaaaaga tatcctggta catgatgcaa cttgtgaaga
     4681 taccactctc caaatgaaac tggcattaat ggaaggtcct gaaatgccga ttgcgatggg
     4741 cgtaattcgc agcgtt
//
LOCUS       DATDNM010000028         2473 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_964813, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000028 DATDNM010000000
VERSION     DATDNM010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_964813"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VI413_00460"
     CDS             <1..253
                     /locus_tag="VI413_00460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913119.1"
                     /translation="IGGGSDYNTKGVGLSKKDLFPKINGTFGLEYMIRNKLGLFISSG
                     LDYYLNDSFDGSIAGQYNDLGWNISVGLKIYMIDFKHKK"
     gene            260..904
                     /locus_tag="VI413_00465"
     CDS             260..904
                     /locus_tag="VI413_00465"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6913120.1"
                     /translation="MKTYKYSICLLLFVALISCESEKLDILYYGTINGVVLDAETYLP
                     VQGAMITTTPASISLLSDAEGKFTIQKVKEGEVAVNIKKKDYLSNSLTVAVYDAETTQ
                     LDFLIYKDDNNIGNISIYDPVPGNGAVDQALAITLKWKIEGKKANAELTYNIYLFESN
                     STVQNLLGENVVLQEVTTSGLKTSTTYYWYVVVKYDGNKVAFSPTWSFKTRDPL"
     gene            complement(1050..1907)
                     /locus_tag="VI413_00470"
     CDS             complement(1050..1907)
                     /locus_tag="VI413_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY6913121.1"
                     /translation="MNKLLLISVYFLTVVIASSCAHKTPDVARKPLLEVEGKFLYEDE
                     IQKVIPPNVSDSDSIDIARSFIKKWVTDVLLYENAKRNVMNQNEIDELVESYRKSLTI
                     HQYQQKMIDQRLPKEPSETDVKAFYDQYSDQLVLKESIIKGLLLVVPEKAPKMANVRS
                     WVQSGNIKALESIEKYSIQNAISYDYFGDRWLTFSEVLKKIPVQVEDPATFLASHKFV
                     EVSDSTQHYFLRIESYRNSGQVEPYEMAKNRISNILLNKQKADFITKFEDDLYNDAVK
                     DETVNFFRK"
     gene            complement(2000..>2473)
                     /locus_tag="VI413_00475"
     CDS             complement(2000..>2473)
                     /locus_tag="VI413_00475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913122.1"
                     /translation="DTEGLAKYFAAHKADYTWEKPHFKGRVISCKDKATLKAAKSIVQ
                     KSHNDSIDKYLRTRLNDSIQYVKIDKGLFIQGENKVVDNQVFKTKEKFVPATDYPFVF
                     VAGKMLKKNPEDYTDVRGLVTADYQEFLEQEWIKSLRAKYPVSVDQNVLKTVKKN"
BASE COUNT          762 a          458 c          463 g          790 t
ORIGIN      
        1 tattggcggt ggatctgatt ataacacgaa gggtgttggt ttatcaaaaa aggatttgtt
       61 tccaaaaata aacggaacat ttgggttgga atacatgatt cgaaataaat taggattatt
      121 catatcctca ggattggatt attatttaaa tgatagtttt gatggaagta tagccggcca
      181 gtacaatgat ttgggttgga atatttccgt cgggctaaag atttatatga ttgattttaa
      241 acacaaaaaa taacctgtta tgaaaacata taaatatagt atttgtctgc ttttatttgt
      301 ggcattaata tcctgtgaat cggaaaagct ggatattctt tattacggaa ccattaatgg
      361 agttgtgttg gatgctgaga cttacctccc ggttcaggga gcaatgataa ctaccacgcc
      421 ggcaagtatt tcattgctgt cggatgccga aggtaaattc accattcaaa aggtaaaaga
      481 aggagaagtt gccgtaaaca taaaaaagaa ggattatctg agcaattctc ttaccgttgc
      541 agtatacgac gccgaaacta cgcagttgga ttttttgata tataaagatg ataataacat
      601 tgggaatata tccatttatg atccggttcc aggaaatggg gctgtagacc aggcactggc
      661 aattacgttg aaatggaaaa tcgaaggtaa aaaagcgaat gctgagttaa cctacaatat
      721 ttatcttttc gagtccaatt ccactgtcca gaatttatta ggagaaaacg ttgttttgca
      781 ggaagtaact acaagcggat taaaaacctc aactacttat tattggtacg tcgtagttaa
      841 atacgacgga aataaagtag catttagtcc cacctggtca tttaaaacca gagatccttt
      901 atgagaatat tgcatttgcc tgcagttata aaaaaacatc cacacttcaa ccaatattaa
      961 aaatagcatt caaacctcca tataaaaatg cagaaaaaga tacaatcaat agttgtatct
     1021 ttttctgcat aaatttcatt gcaattagtc tattttctga agaagtttac cgtttcatct
     1081 ttcacggcat cgttgtacag gtcatcttca aatttggtaa taaaatcagc cttttgttta
     1141 ttcagtaaga tattggaaat tctgttttta gccatttcgt aaggttctac ctgaccggaa
     1201 ttacggtatg attcaatacg caggaaatag tgttgcgtac tgtctgacac ctctacaaat
     1261 ttatgggaag ccagaaaagt ggcaggatct tcaacctgaa cagggatttt tttcagtact
     1321 tcagaaaaag tcagccatct gtcaccgaaa taatcgtagc ttatggcatt ctggatactg
     1381 tatttttcga tgctttccag tgcttttata ttgcctgatt gcacccagct ccgcacattt
     1441 gccatcttcg gggctttttc gggaacaaca agcagaagtc ctttaataat actttccttc
     1501 aacaccagct ggtcgctgta ttgatcgtag aatgctttca catcggtctc cgatggctct
     1561 ttaggaagac gctgatcgat cattttttgc tgatactgat gaatggtaag cgatttgcga
     1621 taactttcca ccaattcgtc aatctcattc tggttcatca cattccgctt ggcattttcg
     1681 tataacaaga cgtcagtcac ccacttttta atgaagctcc gggcaatgtc tatactgtcc
     1741 gaatcactaa cgtttggcgg aattactttc tgaatttcat cttcatagag gaatttacct
     1801 tccacttcga gcaaaggttt gcgcgccaca tcgggcgtct tgtgtgcaca tgagcttgca
     1861 atgaccacgg tcagaaaata aaccgatata agaagtaact tattcatgtg caaaaaattg
     1921 aagaaacgag gacttataga aataaaaacg caaaaataaa agccaaaggt atgactttta
     1981 tttttgcgca gttgtattat tagtttttct taaccgtttt caaaacattc tggtccacag
     2041 aaactggata tttggcacgc aacgatttaa tccactcttg ttccagaaac tcctgataat
     2101 cggcagtaac caaaccacga acatctgtat aatcttctgg gttttttttc agcatttttc
     2161 cggcaacaaa aacaaatgga tagtcagttg caggaacaaa tttctctttt gttttgaaaa
     2221 cctgattatc aacaacctta ttttcaccct gtataaataa tcctttgtca attttcacat
     2281 actggatact gtcatttaaa cgagtacgca agtatttgtc gatagaatcg ttatgcgatt
     2341 tctgaacaat tgatttggcc gctttcagtg ttgccttgtc cttacatgaa attacacgcc
     2401 ctttgaagtg tggtttttcc catgtataat cagccttatg agcagcaaag tattttgcaa
     2461 gtccttcggt atc
//
LOCUS       DATDNM010000029         4413 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_430961, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000029 DATDNM010000000
VERSION     DATDNM010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4413
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430961"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3183)
                     /locus_tag="VI413_00480"
     CDS             complement(<1..3183)
                     /locus_tag="VI413_00480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0051139 - metal cation:proton antiporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CusA/CzcA family heavy metal efflux RND
                     transporter"
                     /protein_id="HEY6913123.1"
                     /translation="MIERIIHFSIKNKFIVGLFVMALIGWGTYSLTRLPIDAIPDITN
                     NQVQIISLAPSLAVQEVESFITAPIEVAVANIPDIIELRSISRLGLSVITIVFKDDVD
                     VYWARQQLSERIKEAEEVIPAGLAKVELAPISSGLGEIYQYRLAVGKGYEKKYNPMEL
                     RTLQDWIVRRELLGTAGVADINSYGGYVKQYEVALNPERLRGMNVTITDIFQALERNN
                     ENTGSAYLDKKPTAYFIRGIGLVKTLEDIEKIVVKNSPSGFPVLIRDVATVQYGSATR
                     YGALVIDTTEAVGGVVMMLKGANAHEVVDNVEKRIESIQKSLPKGVTIEPFLNRSDLV
                     RRAIGTVSTNLIEGALIVIFILVLLLGNMRAGLIVASVIPLAMLFAVSMMKLFGVSGN
                     LMSLGAIDFGLIVDGAVIIVESVVHRITQSKTHHLGIKRLTQQQMDEEVFQASSRIRT
                     AATFGEIIILIVYMPILFLVGIEGKMFGPMAQVVAFAILGAFILSLTYVPMVSALFLS
                     KNTEHKRTVSDKFMDQLHEAFEPIIDFALKRKLLVSVSAILIFVLSLFIFNRLGGEFI
                     PQLEEGDLAAGVVTLQGGSLTNTIEKVEQANKILLDNFPEVKHAVCKIGAGEIPTDPT
                     PMETGDYIITLRDKSELTTAETREELVEKMEEALIPLAGVKFEFQQPIQMRFNELLSG
                     SKQDIAVKIFGDDLNTLAEKAEDIEKIIQKVEGVEDINVEKVTGLAQVQVEYNRDRLA
                     QYGLSVEEVNRVLRAAFAGSQAGVVYDEEKRFGLVVRLDKDYRQSIEDVKNLSVTLPN
                     GGQIPFEMLADVQIKSGPAQVSRENTKRRITVGFNVRNRDVQSVITEVTKKIDAQVKL
                     PTGYFVSYGGQFQNLEAARDRLMIAVPVALLLIFVLLFFTFHSVKQSLLIFTAVPMSA
                     IGGILALWIRGMNFSISAGVGFIALFGVAVLNGIVLIAEFNRLEKEGVTDITERVKKG
                     LHVRLRPVIITAAVASLGFLPMALSTSAGAEVQKPLATVVIGGLITATLLTLIVLPVF
                     YIFFSTRKFKFTLKRKAGVTALIVVLCCSTT"
     gene            complement(3291..3737)
                     /locus_tag="VI413_00485"
     CDS             complement(3291..3737)
                     /locus_tag="VI413_00485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913124.1"
                     /translation="MRYIKYIFVYLFASYFLMAGAGYNVVSYCCQLCAEEGIEAVATN
                     SCSNVHKHTHNKQKTTQQDDLTCTDLSHHSENCHLLRVNTDVPSFHAQSLLKFHQIQP
                     VDLFIPDFISRTEKTEFFAQNDIPPPEMAVKKSGRAILAFHAVLLI"
     gene            3860..>4413
                     /locus_tag="VI413_00490"
     CDS             3860..>4413
                     /locus_tag="VI413_00490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913125.1"
                     /translation="MKRQSILLLVSVLISTFFFSCTSKTVKTEEKDLTKKYYLTKDTT
                     KGWLNVDIEVEIPTQFSDSNVLKSIRATIISNLFGDEYISQPNDSLVPFFAKELLTDY
                     RENNEPLINELDSTSHYSFNNEHTVSGFSLLSDKNIYAYAIERYVYMGGAHGMETKNF
                     YNFDLKTGKLITEKDLFKDNFESEL"
BASE COUNT         1356 a         1032 c          803 g         1222 t
ORIGIN      
        1 cgtcgtagag caacacaaaa caacaatcag tgcagttact cctgcttttc gtttcaaagt
       61 gaatttgaat ttacgtgtcg agaaaaagat atagaataca ggcaatacaa tcaatgtcag
      121 caaagtggca gtaattaaac cgccaataac aacggttgcc aacggtttct gaacctctgc
      181 accagcagaa gtggataaag ccattggcag aaagcccagc gaagcaacgg ctgccgtgat
      241 aataacaggc cgtaatcgca catgcaaccc tttctttacg cgttctgtaa tatcggtaac
      301 tccttctttt tccaaccggt taaactcggc aatcagcaca atgccattca gcacggccac
      361 cccaaacaaa gcgataaacc ctactcctgc cgaaatggag aaattcattc ctcgaatcca
      421 caaggctaat attccaccaa tggccgacat aggaaccgct gtgaaaataa gcaacgactg
      481 cttgaccgaa tggaacgtaa agaacaacaa tacaaaaatc agcaacaaag ccacgggaac
      541 agcaatcatc agcctatccc tggctgcttc caggttttgg aactgtccgc catatgatac
      601 aaaataacca gtcggaagtt ttacctgcgc atctatcttt ttcgttactt cggtaattac
      661 gctttgcaca tcgcgattgc gaacattaaa accaaccgtg atacggcgct ttgtattttc
      721 gcgcgaaacc tgtgccggtc cggattttat ctgaacatcg gcaagcattt caaacggaat
      781 ctggccacca tttggcaacg ttacagacag atttttcacg tcttcgatac tctggcggta
      841 atccttgtct aaccgcacca ccagcccgaa ccgtttttcc tcatcatata ctacaccggc
      901 ctggcttcct gcaaatgccg cacgcagcac acggttcact tcctctaccg aaagtccgta
      961 ttgtgccaac cggtcgcggt tatattctac ctgaacctgt gcaagcccgg ttactttttc
     1021 aacatttata tcttcaacac cttccacctt ttgtatgatt ttctcaatat cttcagcttt
     1081 ttcggccagc gtattcagat cgtcaccaaa gattttcact gcaatatcct gttttgaacc
     1141 ggaaagcaat tcgttgaaac gcatttggat aggctgttgg aattcaaatt tcaccccggc
     1201 caacggaatc aatgcttctt ccattttttc caccagttct tcacgggttt cagccgttgt
     1261 caactcgctt ttatctctca gggtaataat ataatcgcct gtttccatgg gagtcggatc
     1321 ggttggaatc tcccctgccc ctattttaca aaccgcatgt tttacttccg gaaagttatc
     1381 cagcaatatc ttattagctt gttctacttt ctcgattgta tttgtcaatg agccaccctg
     1441 taacgtaaca acacctgctg ccagatcgcc ttcttcaagt tgaggaataa actcaccacc
     1501 caaacggttg aatataaaca aactgagaac aaaaattaaa atagcagaaa ctgacacaag
     1561 taatttacgc ttaagtgcaa agtcgataat tggctcaaat gcctcgtgta actggtccat
     1621 gaatttgtcg gatactgtac gtttatgttc cgtattttta ctcaggaaca aagccgaaac
     1681 cattggtacg taagtcaacg aaagaataaa tgctcccaga atggcaaaag caactacctg
     1741 cgccattggt ccgaacattt ttccttcaat gccgaccaaa aacaaaattg gcatataaac
     1801 aatcagaata attatttcgc caaaagtggc agcagtccgt atccggcttg aagcctgaaa
     1861 aacctcttcg tccatttgct gttgggtaag ccgttttatg cccaaatgat gggttttact
     1921 ttgcgttatc cggtgaacca cgctttccac aataatcacc gctccatcca caatcaaccc
     1981 gaagtcgatg gcaccaaggc tcatcaggtt acccgacaca ccgaaaagct tcatcatgga
     2041 aaccgcgaaa agcatcgcca gcggaattac cgacgctaca atcagtccgg cccgcatatt
     2101 gcccaataaa agcacgagaa tgaaaataac gatcagcgca ccttcaatca agttggttga
     2161 tacagtccca atagcccgcc ttaccaaatc ggaacggttt agaaacggtt caatggttac
     2221 gccctttggt aacgatttct gaatggattc aatccgcttt tccacattat caacaacctc
     2281 atgcgcattg gcacctttca gcatcatcac cacaccaccc actgcttcgg tagtatcaat
     2341 caccaaagcg ccatagcggg tggcactacc gtattgaacg gtagccacat cccgaatcaa
     2401 aacagggaaa ccggaaggac tgtttttcac aacaattttt tcaatatctt ccagtgtttt
     2461 caccagtcct attccgcgaa taaaatatgc agtcggtttt ttatcaagat aagcacttcc
     2521 cgtgttttca ttattacgtt ccaatgcctg gaaaatatca gtaatagtca cattcatccc
     2581 ccgcaatctt tctgggttca acgcaacttc atattgtttc acatagcctc catagctgtt
     2641 tatatcggct acaccggctg ttccgagcaa ttcccgccgc acaatccagt cttgcagggt
     2701 tcgcaattcc attggattgt attttttctc ataccctttt ccaaccgcga gcctatattg
     2761 gtaaatttcg cctaaccccg aggaaatggg agccagttct actttagcga gtccggcagg
     2821 tataacttct tccgcttcct tgatgcgctc actcagctgc tgtcgcgccc aataaacatc
     2881 aacatcatcc ttaaacacaa tggtaataac tgaaagtcca aggcgtgaaa tggaccggag
     2941 ttcaataata tcaggaatat tggcaactgc cacttcaata ggtgcagtaa taaaactctc
     3001 cacttcctgc actgcaagcg atggagccag ggatataatc tgtacctggt tattggtaat
     3061 atcgggaata gcatcaatag gcagacgggt aagcgagtaa gtaccccacc caataagcgc
     3121 catcacaaac aaaccgacaa taaatttgtt tttaattgag aaatgaataa tacgttctat
     3181 cataatttga atttataata tggtaatata ctattgtata aatcatttgc agatgcaaac
     3241 gaaaacaggc aaacaaaaaa attgcttgcc gatatattat aatccaaaaa tcaaatcaga
     3301 agtacagcgt ggaaagccag aatagcacgt ccggatttct tgacggccat ttcaggagga
     3361 ggaatatcat tttgagcgaa aaattctgtt ttttcagttc gggatatgaa gtcaggtata
     3421 aataaatcca ccggttgaat ttgatggaac ttcaacagtg actgggcatg aaacgaaggt
     3481 acatctgtat ttaccctcaa caaatggcaa ttttcggaat gatgactcaa atcagtgcaa
     3541 gtcagatcat cctgttgcgt ggttttttgt ttgttatgcg tatgtttatg aacattagaa
     3601 catgaatttg ttgctacagc ttcaatgcct tcctcggcac acagctggca acaataactc
     3661 acaacattat accccgctcc ggccattaaa aaataggaag caaaaagata aacgaatatg
     3721 tattttatat atctcatttt cattattcgg aacaaagata gcaggtttaa gattatcccg
     3781 aaaacttttt gtattttttt agacagtatc tgtttttaaa ttgtaaattt gcaccgtaaa
     3841 taaataaagg tatttgatta tgaaaagaca atctattctg ttgttggtga gcgtattaat
     3901 ttctacattt tttttctcat gcacatcaaa aacagtaaaa acggaagaaa aggatttgac
     3961 aaaaaagtat tatttaacca aagacactac aaaagggtgg ttaaatgtgg atattgaagt
     4021 agaaattcct actcaatttt ccgatagtaa cgtattaaaa tcaattcggg caaccatcat
     4081 ttctaattta ttcggcgacg aatacatttc tcaaccaaac gattcgttgg taccattttt
     4141 cgctaaagag cttctcactg attaccgtga aaataacgag ccgttaatca atgaactgga
     4201 tagtacgagc cattattcgt tcaacaacga gcacacggtt tcgggcttca gtcttttaag
     4261 cgacaagaat atatatgctt atgctattga acgttacgta tatatgggtg gtgcgcacgg
     4321 tatggaaacg aagaatttct acaacttcga tttaaaaact ggaaaactta tcacagaaaa
     4381 agatcttttc aaagataatt tcgaatccga act
//
LOCUS       DATDNM010000030         2594 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1391990, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000030 DATDNM010000000
VERSION     DATDNM010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1391990"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1403
                     /locus_tag="VI413_00495"
     CDS             <1..1403
                     /locus_tag="VI413_00495"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6913126.1"
                     /translation="KEMGCNAIRTSHNPQDEAFYDICDEIGLMVMDEAFDEWEFPKRK
                     WIEGWNAGKPGYDGYATYFNEWGERDITDMVMKHKNHPSIIMWSIGNEVDYPNDPYSH
                     PILDKEGIGQKSVAGYKPNQPDAARLGVIAKKLVACVKSVDTTRPVTGALAGVVMSNH
                     TDYPFALDITGYNYTENRYKQDHEQYPKRVLYGSETRHDLNAWKYVKNNDYVAGQFLW
                     TGIDYLGEAGQWPSRGFTTGLLDLCGNKKSLAWYRESLWAEKPMVYIGTAAGNRRNSL
                     NNLSANWNYKPDETITVGCFTNCEKTILKLNGEIISTEPTIDSETGGKSWKVPYKAGI
                     LSVTGLNQNKEVATYELRTSEQPEVIACKSEIQTLKGKDDVALIELTITDKNGVPVYL
                     SDNEITCRISGPARILGLENGDMSDMADHRKNTLRVYHGRLIAYIQATGNDGKVDIQF
                     TSNWLKAANISFEIKK"
     gene            1536..2111
                     /locus_tag="VI413_00500"
     CDS             1536..2111
                     /locus_tag="VI413_00500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6913127.1"
                     /translation="METAAQLQMSEHKARSITQTIKQFRQKLFSFVRDKVKSTEDAED
                     ILQDVWVQLSNLSDVGDLENVSAWLYEVARNKITDKSRKKTNLALEDYSYENEEGEFN
                     FKEILLLDDSNNPELGFFKEMFWKEFQKTLDELPENQREVFLLNEMEDMTLQQIADQK
                     GENLKTIISRKGYAVKHLRNKLNYLYEELNT"
     gene            2168..>2594
                     /locus_tag="VI413_00505"
     CDS             2168..>2594
                     /locus_tag="VI413_00505"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002984837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6913128.1"
                     /translation="MPEFWETSFRDKQEMWGWEPADSAIETLELFKKYELNNILIPGF
                     GYGRNAKIFTDNGFKVTGIEISETAIDLAKKQFGDSIKVYHGSVSSMPFDQELYDGIF
                     SYALIHLLSKKERIKLIDDCYNQLAPNGYMVFVSISKMDF"
BASE COUNT          888 a          486 c          579 g          641 t
ORIGIN      
        1 tcaaagaaat gggttgtaat gctattcgta ccagccacaa tcctcaggat gaagcgttct
       61 atgatatttg tgacgaaatc gggctgatgg tcatggacga agcttttgac gaatgggaat
      121 ttcctaaacg caaatggata gaaggctgga atgccggcaa acccggatac gatggctacg
      181 caacctattt caacgaatgg ggcgaaagag atattaccga catggtgatg aagcataaaa
      241 atcatccctc catcattatg tggagcattg gcaacgaagt ggattatcct aacgatccgt
      301 attctcatcc aattctggat aaagaaggta tcgggcaaaa atccgttgcg ggctacaagc
      361 caaaccaacc cgatgcagcc agattgggag ttattgccaa aaagctggtt gcctgtgtaa
      421 aaagtgtaga tactacccga cctgtaaccg gagcattggc aggagttgta atgtcaaatc
      481 ataccgatta tccttttgcg ctggatatta cgggctataa ttacaccgaa aacagataca
      541 aacaagacca cgagcaatat ccgaaaaggg tactttacgg cagtgaaacc cgacacgact
      601 tgaatgcatg gaaatatgta aaaaacaatg attatgtggc cggacagttc ctctggacgg
      661 gtattgatta cctgggagaa gccggacagt ggccgtcgcg tggttttact accgggttac
      721 tcgatttgtg cggaaacaaa aaatcattag cctggtaccg cgaaagttta tgggcggaaa
      781 aaccaatggt ttacattgga actgctgccg gaaacaggcg aaattcgctg aacaacctct
      841 ctgcaaactg gaattataaa ccggatgaga caataactgt tggctgcttc acaaattgcg
      901 aaaagacaat acttaaactc aatggcgaga ttatcagcac cgaaccaact atcgactctg
      961 aaaccggagg gaaatcatgg aaagttccgt ataaagccgg aatattgagc gttacaggtt
     1021 taaatcagaa taaagaagta gccacctatg aactcagaac atctgagcaa ccggaagtaa
     1081 ttgcatgcaa gtcggagatt caaacgctta aaggcaaaga tgatgttgca ctgattgagc
     1141 tgacaataac ggataaaaac ggtgtgcctg tttatctgtc cgacaatgaa atcacctgca
     1201 gaataagcgg tcctgcccga atacttggct tggaaaatgg agatatgtcg gacatggctg
     1261 atcacagaaa aaataccctt cgcgtatatc acggacgttt gatagcatat atccaggcaa
     1321 caggcaatga tggtaaagtt gacatccaat ttacgtcaaa ctggctgaaa gcggctaata
     1381 tttcttttga aataaagaaa taagcgctca gtgaaactga ctttaaatcc cctctaaatt
     1441 atccgatttt gaggggattt tagttaccgg aacatttctc tacaaaaaac gttttgcatt
     1501 taaagtaaaa ctccacttca ttcgtcttca ttgatatgga gacagcagcc caactacaga
     1561 tgagtgagca taaagcacgt tctattacgc aaaccattaa acaattccgt caaaaattgt
     1621 ttagttttgt gcgcgataag gtgaagtcta ccgaagatgc tgaagatatt ctgcaggatg
     1681 tgtgggtaca gctaagcaac ctgagcgatg ttggcgacct ggaaaacgta agtgcctggt
     1741 tgtatgaagt agcccgaaac aagataaccg acaaatcgcg gaagaaaacc aatctggcgt
     1801 tggaggacta cagttacgag aacgaagagg gcgaattcaa ctttaaagaa atcctgttgc
     1861 tggacgacag caacaatccg gaactgggat ttttcaaaga aatgttctgg aaagaattcc
     1921 aaaaaacact ggacgagctg cccgaaaatc agcgggaagt atttctgctc aatgaaatgg
     1981 aggacatgac tttgcagcaa attgcggatc agaaaggcga aaacctgaaa accattatca
     2041 gccgaaaagg ctatgcagta aaacatttgc gtaacaagct gaattatctg tacgaagaac
     2101 tgaatacata gttagtagtt aaccagaagc acaaataaca cgacacatta ataaaacagg
     2161 aaataatatg ccagaatttt gggaaacaag ttttagagac aaacaagaaa tgtggggctg
     2221 ggaaccagcc gattctgcca ttgaaacttt agaattgttt aaaaaatacg aattaaataa
     2281 catcctgatt cctgggtttg gttacggtag aaatgccaag atttttactg acaatggatt
     2341 caaggttacc gggattgaga tttctgaaac tgcaattgat ctggcaaaaa aacaatttgg
     2401 tgatagtata aaagtatatc acgggtctgt tagttcaatg ccatttgacc aagaattata
     2461 tgatggaata ttcagttatg ccttaatcca tttattaagc aaaaaagaac gaataaaact
     2521 gattgatgat tgttataatc aacttgcacc taatggatac atggtttttg tatcaatttc
     2581 aaaaatggat ttta
//
LOCUS       DATDNM010000031         3851 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1285575, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000031 DATDNM010000000
VERSION     DATDNM010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1285575"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..834)
                     /locus_tag="VI413_00510"
     CDS             complement(<1..834)
                     /locus_tag="VI413_00510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0001727 - lipid kinase activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YegS/Rv2252/BmrU family lipid kinase"
                     /protein_id="HEY6913129.1"
                     /translation="MMRKKIAFIINPISGTIKKEVLPALIQQELDANVFEAEIVFTEY
                     RGHGTSLAKSFIERKFEYIVAVGGDGTVNEIAQTLVHTDCSLGIIPIGSGNGLARHLG
                     IPMNSRKAIEQLNHSESILIDYGIVNGKPFFCTCGTGFDAYVSTEFAKGHRRGIMRYI
                     EKIITGYFSYKSQNYHILGNGIDLNTKAFVMTFANASQWGNNAYIAPQASVQDGKLDI
                     SIMSNFPIIAIPTLALQLFTKTIDKDLFMTTLRSDEITLTREESGPFHYDGEPYEEGR
                     EI"
     gene            1070..3208
                     /gene="rnr"
                     /locus_tag="VI413_00515"
     CDS             1070..3208
                     /gene="rnr"
                     /locus_tag="VI413_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008997 - ribonuclease R activity
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEY6913130.1"
                     /translation="MSKKKRSSQSTKMNKKELVRNIINVFNENAEKTFNYKQISTLLD
                     IKSESQRIFINQLLYELLDEDFLVEISRGKFKVNSRGGYLEGVIDRQGVKTYLVPDDG
                     GEPVFIPERKTNHAFLNDKVKVFLYAHRRGQMPEGEVVEIIKRAKDTFVGILQVSENF
                     AFLISDNKVVTNDIFIPKSKLNGGKNGQKAVVKLLAWEPNLKNPVGEVIDVLGEKGDN
                     TTEMHAILAEFGLPYKYPADVEAAAQKIDAGITPEEVAKRIDMRNVTTFTIDPRDAKD
                     FDDALSLRKLNNGLWEVGVHIADVTHYVRPESIIEQEGRERATSVYLVDRTIPMLPEH
                     LSNGICSLRPNEDKLTYSVIFQMNDKAEIQHYEIAKTVTCSNRRFTYEEAQTIIETGE
                     GDFKEEILTLDRLAKILREKRFQEGAIAFDRVEVRFDIDATGKPVSVFFKEQKDSNKL
                     IEEFMLLANKTVATHIGRPGKGQKAKTFVYRIHDVPNPDKLNNFAAFIKRFGYTLKTT
                     GKQASVSSSINHLLDEVQGKKEQNLIETLAIRSMAKAIYSTSNMGHYGLAFDFYTHFT
                     SPIRRYPDMMVHRLLEKYADGGRSVNASEYEEYCQHSSDMEQLASNAERASIKYKQVE
                     FMSERLGQVFDGVISGVTEWGIYVELIENKCEGMVPIRDLDDDFYTLDDKNYCLVGRR
                     FHKKYQLGDVITVKVARANLDRKQLDFTIA"
     gene            3360..3433
                     /locus_tag="VI413_00520"
     tRNA            3360..3433
                     /locus_tag="VI413_00520"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3394..3396,aa:Arg,seq:acg)
BASE COUNT         1134 a          731 c          863 g         1123 t
ORIGIN      
        1 gatctctctt ccttcttcat agggttctcc atcgtaatgg aaaggtccgg attcttcgcg
       61 cgtaagtgtt atttcatccg agcgcaacgt tgtcataaat aaatctttat caatagtctt
      121 ggtgaaaagt tgtaatgcta aggttggaat ggcaatgatg ggaaaattac tcataatgga
      181 aatgtccagt ttgccatcct gtacacttgc ctgaggggct atgtaagcgt tgtttcccca
      241 ttgtgaggca ttggcgaagg tcattacgaa cgctttggtg ttcaggtcga ttccattgcc
      301 cagaatgtgg taattctgcg atttgtagct gaaatatccg gtaattattt tttcgatata
      361 ccgcatgatt ccacgcctgt gccctttggc gaattccgtg cttacataag catcaaaccc
      421 ggtaccgcaa gtacagaaaa aaggttttcc gtttacaatg ccatagtcta taagtatgga
      481 ttccgagtga ttgagttgct caatggcttt gcggctattc atgggaatgc ctaaatggcg
      541 tgcaagtccg ttgccggagc ctatgggaat tattcccagc gagcaatcag tgtgaaccag
      601 agtttgtgct atttcattaa ccgttccatc accgccaaca gccacaatgt attcaaattt
      661 cctttcaata aaagattttg caagtgatgt tccatgccca cgatactccg tgaaaacaat
      721 ttcagcttca aacacattgg catccagctc ttgctgaatt aaggcgggga gcacttcttt
      781 tttgattgtt cccgatatcg gatttataat aaatgcaatc ttttttctca tcatgtgttt
      841 tatcgctaca ttaaagcggc tgcgaaaata ctaataattt gccgataaac aagtttgtga
      901 accaactata gcgctgatag tatatctttt gtaacgacta aatgaaattt caattactta
      961 tttttccaaa tagaactatt caagttaaca taatgttgta tatttgcatg aagttatgct
     1021 ttctgaatgc agaatagctg acttttcaaa taatcaaact acagaagcca tgtcaaaaaa
     1081 gaaacgctcg tcgcaaagta ccaaaatgaa taagaaagaa ttggtgcgta atataatcaa
     1141 tgtgtttaat gaaaatgcag agaaaacgtt caattacaaa caaatatcga cattgctgga
     1201 tataaaatcc gaatcacagc ggatatttat caatcaatta ttatacgagt tgttggatga
     1261 agattttctg gtggagattt cccgtggaaa gttcaaagtc aattcgcgtg gcggttacct
     1321 ggaaggcgtt atcgaccgtc agggcgtgaa gacctatctt gtccctgacg atggaggcga
     1381 acctgtattt atccccgagc gtaaaacgaa tcatgctttt ctgaacgata aagtgaaggt
     1441 ttttctgtat gcacatcggc gtggacaaat gcccgaaggt gaagtggtag agattatcaa
     1501 acgtgccaag gatacatttg tcggcatttt gcaagtgtct gagaattttg cctttcttat
     1561 ttcggacaat aaagtggtga ctaacgatat atttattcca aaaagtaaac tcaacggagg
     1621 taaaaatggc cagaaagcag ttgtaaagct gttggcgtgg gagccgaatt tgaaaaatcc
     1681 tgttggggaa gtcattgatg tgttgggcga aaaaggcgat aacacaaccg aaatgcatgc
     1741 tattttggcg gaattcggtt tgccgtataa atatccggca gatgtggaag ctgcagcgca
     1801 gaaaattgat gcaggcatta ccccggaaga ggtggcaaag cgtattgata tgcgtaatgt
     1861 gaccacattt accattgacc cgcgcgatgc gaaggatttt gacgatgcat tgtcgttgcg
     1921 gaaactgaat aacgggcttt gggaagtggg cgtgcatatt gccgatgtaa cccattatgt
     1981 tcgtccggaa agcattattg agcaggaagg gcgggagcgg gctacatccg tttatctggt
     2041 tgacagaact attcctatgt tgcccgagca tttgtcgaat ggtatttgct cgcttcgtcc
     2101 gaatgaagat aagttgactt attcggttat tttccaaatg aacgacaaag ctgagattca
     2161 gcattacgaa attgcaaaaa ccgtaacgtg cagcaaccgc cgctttactt acgaagaagc
     2221 acagacgata attgaaaccg gtgagggcga ttttaaagaa gaaatcctga cgctggatcg
     2281 tctggcaaag attctcagag agaaacgttt tcaggaagga gctatagctt ttgacagggt
     2341 ggaagtgagg tttgatattg atgctacagg caaacctgtt tctgtatttt ttaaagaaca
     2401 gaaggactcc aataaactga ttgaagaatt tatgttgctg gccaataaaa ctgtagcaac
     2461 gcatataggc cggcccggca aagggcaaaa agccaaaaca tttgtctatc gtattcacga
     2521 tgtgcccaat ccggataaac tgaacaactt tgcagcgttt atcaaacggt ttggatatac
     2581 tcttaaaacg acaggcaagc aggcttccgt ttcaagttcc attaatcatt tgctggatga
     2641 agttcagggc aagaaagagc agaacctgat tgaaacactg gctattcgct ccatggctaa
     2701 agctatttat tctacatcga acatggggca ctatgggctg gctttcgact tttatacaca
     2761 tttcacctcg cctatccgtc ggtaccctga tatgatggtt caccggctgc tcgaaaaata
     2821 tgccgatggc ggtcgtagcg tgaatgcctc cgaatacgaa gagtattgcc agcacagttc
     2881 ggatatggag cagctagcat ccaatgctga acgcgcctcg attaaataca agcaggttga
     2941 atttatgtcc gaacgtctgg gacaggtatt cgacggtgtt atttcgggag ttactgaatg
     3001 ggggatttat gtagaactga tcgaaaataa atgcgaaggc atggtgccaa ttcgcgattt
     3061 agatgatgat ttttacacgt tggacgataa aaactattgt ctggtgggtc gccggttcca
     3121 taaaaagtac caattgggcg atgtaatcac tgtaaaagtg gcaagagcca acctggaccg
     3181 gaagcaacta gacttcacga ttgcttaaaa atgtctgaat tctgctgatt ctcgggtgcg
     3241 ttactctcta ataacttgcg acttgcagtt tgagccttgc aaaagtagca actttttagc
     3301 agaattcttt tgcagaattg aaaaatagcg ctatctttgc actcgcaaaa caaagcaatg
     3361 gctgcgtagc tcaactgaat agagtaccac actacggatg tgggggttac aggtttgaat
     3421 cctgtcgcgg tcactttttg gcattatata aatccttgat aactaatatg ttatcaagga
     3481 tttgtttttt atgtcaagtt aatttcccca cattttcccc gccttgctcg aaaattgatt
     3541 attttgtctt tgcttttaac tgtatttcgg gtcgaagcaa gacggattgt aacgaattgt
     3601 aagttgagtt ttttattggc atagattcaa acaaggcaaa taaaaaatcc ccgacaatca
     3661 tttgaattat cggggattga aacttgcgtt tagtagtgat agtgaacata gtgtatcttc
     3721 aaatttgcat ttatgaattt actatcaact tgtcacatct ttttaaatac gggagctcca
     3781 atattctcaa aactataatg tatacaatta caaggagcaa acctcactct agtcggatgc
     3841 tccttaagaa a
//
LOCUS       DATDNM010000032         2486 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1605736, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000032 DATDNM010000000
VERSION     DATDNM010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1605736"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..1717
                     /locus_tag="VI413_00525"
     CDS             137..1717
                     /locus_tag="VI413_00525"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6913131.1"
                     /translation="MKYKYIIFTLILAAVSITSCKDAWDVHYSNTGGVKSSLRLYEYI
                     KAQSDLSTFTKMLEISGYDTILNKPQTYTVWAPVNNGLADVDLTDTTQVVDIVRNHIS
                     RFSYTTSEVESETVFMIASKFLTFRKTEAGFTFGGKKLLESDIATNNGILHKVDGYVP
                     YVSNIWEFIGKTSGLDSLKAYLYSQSTSIFDQAASVEIGTNALNQAVYDSVIIFSNPI
                     LDKIGQLQVEDSTFAAILPNNTAWTKVYNQIKSNYKTLAKDGGAAQQRLNTQWAIVRN
                     LVFRFKNMAVEPTVYDSLISTSGNVFRPSSYLFDGATKHNLSNGFAYVTDSLRFKAAD
                     SWQQPIKVEAENSSYGRSFLYSSLYVRSGLGTGYNVSSTKYLVCEPTTVSKSTPNSVT
                     FPIPNTLSGKYKIYCVFVPSSILLPTDLRQYKVKYSLSYINAAGTQVNNAPITSKNVV
                     STNLSGVPATFTTDASAITKMYVAQFEFPYCNLYTTKSVLTDITVKLKVESATLITET
                     ALFDPILRIDYIILEPVQ"
     gene            1749..>2486
                     /locus_tag="VI413_00530"
     CDS             1749..>2486
                     /locus_tag="VI413_00530"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEY6913132.1"
                     /translation="MKNYKYISGMNRIAKSIKCICLILIFVFGLSAQAVKAVENELKP
                     TVTRTISGLVRDAHTQKPVIAAQIKTLNGDASASTNESGVFQIKLTLKNAVLSVSAYD
                     YNIRQYAVQGKDSVVIDLYSDNYSSYSKSVDFINGAVDNILTTSSVKAVSNINRSTAV
                     TADELLQTELGADARVVTRSGTSGIGSSVFIRGLNSINANAQPLFVVDGVVWNNLNDV
                     ISIHKGFFANPLDNIDVNDIESISVLKD"
BASE COUNT          802 a          473 c          500 g          711 t
ORIGIN      
        1 gaataaaagc caacaaatga tgactggatg atgatctggt gtttgacaat tataaaaaac
       61 aactatttac acatgaaacg agccccaaga aaatgggaga gttccatacg accttaaaaa
      121 aaacaattat ttacgtatga aatataagta tataatattc accttaatac ttgctgctgt
      181 atccattaca tcttgtaaag atgcctggga cgtacattat agcaatacag gaggagttaa
      241 aagcagtctg agattatacg aatacatcaa ggcgcaatct gatttaagca catttaccaa
      301 gatgctcgaa atttcaggtt atgatactat tctgaacaag ccccaaacat atacagtttg
      361 ggctccggtt aacaacggac tggctgatgt tgatttaacc gacacaaccc aggttgttga
      421 tatcgtacga aatcatattt cgcgcttctc gtacacaacc tcagaagttg aatcggaaac
      481 agtatttatg attgcttcaa agtttctgac gttcagaaaa acagaagccg gatttacatt
      541 tggtggaaag aaacttctgg aatctgacat agcaaccaac aatggtattt tgcataaagt
      601 ggatggttat gtgccttatg taagtaatat ctgggagttt attggtaaaa ccagtggact
      661 cgattccctg aaagcttatt tgtattcgca aagcaccagc atattcgatc aggctgccag
      721 tgtggaaata ggtacaaatg cattgaacca ggctgtttat gattctgtaa ttattttttc
      781 gaatcctatt ctggataaga tagggcagct acaggtcgaa gacagtacgt ttgctgctat
      841 tttaccaaac aatacagcgt ggacaaaagt ctacaaccaa ataaaatcaa actacaaaac
      901 attagctaaa gacggtgggg cagctcaaca acgcctgaat acacagtggg ctattgttcg
      961 caatctggtt ttccggttca aaaatatggc tgttgagcct acggtttacg actcgcttat
     1021 ttcaacttct ggaaatgtat tccgtccttc atcttatttg tttgacggag caacaaaaca
     1081 caatctgagt aatggttttg catatgtaac ggactcgttg agatttaaag cggcagattc
     1141 gtggcaacaa ccaatcaagg tagaagctga aaactctagc tacgggcgtt cgtttcttta
     1201 ttccagtctt tacgtccgtt cgggattggg tactggctac aatgtgtcaa gtactaaata
     1261 cctggtttgt gagcctacaa cagtaagtaa gtccactccg aattcagtaa cattccccat
     1321 tccaaatacc ttgtcgggta aatacaaaat ttactgtgtt ttcgtacctt caagcatttt
     1381 gttgccgaca gacttgcgac aatataaagt taaatactcg ctatcataca taaatgcggc
     1441 aggaacgcag gtaaacaatg cacctatcac gtcaaaaaat gtagttagta caaatcttag
     1501 tggagtacca gcaactttca ctactgacgc ttcagcaatt accaaaatgt acgtggcaca
     1561 attcgaattt ccttactgca acctgtacac aaccaaatca gtattgactg atatcacagt
     1621 gaaactgaaa gttgaaagtg caaccctgat tacagaaacg gcattatttg atccaatact
     1681 ccgtattgat tatattattt tggaaccggt tcaataaaat gaaagcataa taaattgtta
     1741 gaaagtacat gaaaaattat aaatatatat caggaatgaa caggatagcc aaatcgataa
     1801 agtgtatatg cctgattctg atttttgtat tcggcctttc tgcgcaggca gtaaaagcgg
     1861 tagaaaacga attgaaacca actgtaacac gcactataag tggtttggtc cgggatgcgc
     1921 atacccaaaa accggttatt gcagctcaga ttaaaaccct gaatggcgat gcgtcggctt
     1981 cgactaacga atcaggcgta tttcaaatta agctgacatt gaaaaatgca gtacttagtg
     2041 tgtcggctta cgattataat atccgtcagt atgccgttca gggcaaagat tcggttgtaa
     2101 tagatttgta ttctgataat tacagcagct attccaaatc agtggatttt ataaatggcg
     2161 ctgtggataa tatcctcaca acttcgtcgg taaaagcggt gagcaatata aaccgttcaa
     2221 ctgctgtaac tgccgatgaa ctgctccaaa cagaactggg agccgatgcc agagttgtaa
     2281 cgcgctcggg tacttcaggc ataggatctt cagtgtttat tcgcggatta aactcgataa
     2341 acgccaatgc gcaacctttg tttgttgtag atggtgtagt ttggaataat ctgaacgatg
     2401 ttatctccat tcataaagga tttttcgcta atccgctgga taatattgat gtgaatgata
     2461 ttgaaagcat ctcggtgctt aaagat
//
LOCUS       DATDNM010000033         2289 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_857492, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000033 DATDNM010000000
VERSION     DATDNM010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_857492"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..977)
                     /locus_tag="VI413_00535"
     CDS             complement(66..977)
                     /locus_tag="VI413_00535"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6913133.1"
                     /translation="MYKSIKLYSAIVLAMVFWSFSFIWTRVAIQSFQPMTLITFRLII
                     ASALLFGVAKVSGKFQQIRKKDLKLFFLLAFFEPFIYYVGETYGLTMVESTLAAVIVS
                     TIPLFAPVLAFVVLRERIGWFNILGILVSLAGVFIVIYEPAGGFKANPWGVALLFLAV
                     FAAICYATTLKKISTHYSTMNVIFYQSLLGLIFFIPTFLIADYPAIQNLTVSGESLLA
                     LIMLSVFASVVAFVLFAWAVRKVGVTRTNVFVNLIPVFTAILSWLILNETITLLKWFG
                     IVVVVLGLFVSQWGKIRFEKKVEDEVL"
     gene            complement(991..1971)
                     /locus_tag="VI413_00540"
     CDS             complement(991..1971)
                     /locus_tag="VI413_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008765352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine kinase"
                     /protein_id="HEY6913134.1"
                     /translation="MKKILGMGNALTDILLQIGSDDILFSLNLLKGGMMLIDTDRSLE
                     IGAAVSKYPSIMATGGSASNTINGVTKLGLNAGFVGKVGNDEVGEFFIKDSISNGVQP
                     HLLISETPSGRCIVLVSPDSERTLCTYLGAACELEAKDLSSDTFIGYDIFHIEGYLVQ
                     NHDLIRTAVKLAKEAGLQVSIDLASYNVVEANIDFLKEIVREYVDIVFANEEEARAFT
                     GKEPEEALIHISDHCDIAIVKVGKEGSYIKSGDEQVQIKPRLATAIDTTGAGDLYAAG
                     FLFGLANDYSLEICGKIGSLVSGNVVEVLGAKMSDDVWGDIHAEIRKIIE"
     gene            2065..2138
                     /locus_tag="VI413_00545"
     tRNA            2065..2138
                     /locus_tag="VI413_00545"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2099..2101,aa:Asn,seq:gtt)
BASE COUNT          780 a          514 c          323 g          672 t
ORIGIN      
        1 cacatataaa taattgaggt aacaaatccg cccgaaatag cttaatcttg atttaatcaa
       61 gtaatttata aaacttcatc ctcaactttc ttctcaaatc tgatttttcc ccactggctt
      121 acaaacaatc ccaacacaac cactactatc ccaaaccatt tcagtaaagt aattgtctca
      181 ttcaatatca gccacgatag aatagcagta aaaacaggta tcagatttac aaaaacattg
      241 gtacgggtta caccaacctt gcgtacggcc catgcaaaga gaacaaatgc aacaacagag
      301 gcaaaaacgg ataacattat caatgccagc aatgattctc cggatacagt cagattttga
      361 attgcggggt agtcggcaat caaaaatgta ggtataaaaa atatcaaacc aagtaaactc
      421 tgataaaata ttacgttcat tgttgaataa tgcgtcgaga ttttttttaa agttgtcgca
      481 tagcatattg cggcaaaaac tgctaaaaac aacaaagcta ctccccatgg gttagcttta
      541 aatccgcctg ccggctcata aataacaata aaaactccag ctaatgaaac taaaatgcca
      601 aggatattga accagccaat tcgttcgcgc aaaacaacaa aagccaacac cggagcaaaa
      661 agtggtatgg tagatactat tacagctgcc aaagttgact ctaccattgt caacccgtaa
      721 gtttcaccta cataatatat aaacggttca aaaaaagcca ataagaaaaa aagtttcaaa
      781 tctttttttc ttatttgttg aaactttcca ctcaccttag caaccccaaa caacaaagcc
      841 gacgcaatta tcagtctaaa tgtaatcagc gtcattggtt gaaacgattg aatggccaca
      901 cgcgtccaaa tgaacgagaa tgaccaaaaa accattgcca aaactatggc tgaatataat
      961 ttaattgatt tatacaaaat aaacttataa ttactcgatt attttcctta tctccgcatg
     1021 aatatcaccc caaacgtcat cactcatttt ggctccaagc acctcaacca cattacctga
     1081 aaccaatgaa ccaattttcc cgcagatttc taaggaataa tcatttgcca gtccaaataa
     1141 aaatccggca gcatataagt cacccgcccc cgtagtgtca attgctgttg ctaagcgtgg
     1201 tttaatttgc acttgctcat cacctgattt aatatatgat ccttcttttc ctacttttac
     1261 aatagcaata tcacagtggt cagaaatatg aattaatgct tcttcaggtt cttttcctgt
     1321 aaaagcacgc gcttcttctt cattcgcaaa aacgatatcg acatattctc gcacaatttc
     1381 ctttaaaaaa tcaatattcg cttctacgac attatagctc gccaaatcaa tcgacacttg
     1441 caaaccagct tctttagcca atttaactgc ggtacggatc aaatcatggt tttgcaccaa
     1501 atatccttct atatgaaaga tatcgtagcc aataaacgta tcagaactca agtctttcgc
     1561 ttcaagttca catgcagcac caagatatgt acacagcgta cgctcgctat caggcgacac
     1621 caaaacgata caacgccccg atggggtttc acttataagc aaatgaggtt gcaccccgtt
     1681 gctaattgaa tcttttataa aaaactctcc tacttcatca tttcccactt tcccgacaaa
     1741 acctgcattc aggcccagct tggtaactcc atttatagta tttgaagccg acccaccagt
     1801 tgccattatt gatggatatt tactaactgc ggcaccaatt tctaaggatc tatccgtatc
     1861 aattaacatc attccacctt tcagcaagtt caatgaaaat aaaatatcat cactaccaat
     1921 ttgcaacaaa atgtctgtca aggcattacc catgcctaat attttcttca tatattttct
     1981 ctttgttttt tatgcaaaga tattgcatat ttcaataaaa ccaattactt ttgcaacgca
     2041 tttgacaaaa atgtgcaact aaattcttcc ttagctcagt cggttagagc atctgactgt
     2101 taatcagagg gtccttggtt caagtccaag agggagagca aaagtcgtag aaatacgatt
     2161 tttttattgt ttttatcttt attttctgat tatcaaacac tgataaaaac aaacttttaa
     2221 ttcttttctt tttgcattta ctattgcata agtcaaataa aaagattact tttgcaacgc
     2281 atttgagac
//
LOCUS       DATDNM010000034         2810 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1071788, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000034 DATDNM010000000
VERSION     DATDNM010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1071788"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..1090
                     /locus_tag="VI413_00550"
     CDS             164..1090
                     /locus_tag="VI413_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEY6913135.1"
                     /translation="MRTNIKQNLFNSKVLLFGLGLSILTTSCGKSNNDADASGTFEAT
                     EVIVSAQGAGQILSLNVEEGQTLTANQLVGTIDSTQLYLRKKQLQASGKAIQSRRPDI
                     KKQIAAIEQQITTAKTERKRAENLIKANAANQKQLDDINAQIAVLEKQLDAQKTMLES
                     SNQGITDESEGLTFQIKQLEDQLDKCKITSPIAGTVLVKYAEMGEVAAPGKALFKIAD
                     TNNMILRAYITADQLTQVKVGQTVKVKTDSGKDGSKEYSGTVAWISSKAEFTPKTIQT
                     RDERANLVYAVKINVKNDGLIKIGMYGDAQFN"
     gene            1115..2050
                     /locus_tag="VI413_00555"
     CDS             1115..2050
                     /locus_tag="VI413_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008148383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6913136.1"
                     /translation="MNNSNKIPDIAIHCESVSKNYKKIEALKDINFDVNRGEIFGIIG
                     PDGAGKTTLFRILTTLILADKGTASVDGFDVVNDYKEIRKRVGYMPGRFSLYQDLTVE
                     ENLNFFATVFNTTIEENYELIKDIYQQIEPFKKRRAGKLSGGMKQKLALSCALIHKPS
                     VLFLDEPTTGVDPVSRKEFWGMLKKLKAQGITILVSTPYMDEASLCDRIALIQNGEFL
                     TIDTPKNIVSQYKNKLWAVQSNNMHKLLIDLRANETTKNCFAFGDKHHVSVDNGEDLS
                     VNNLNELMVQKGHTHIHIWEIEPTIEDCFMQLSQR"
     gene            2076..>2810
                     /locus_tag="VI413_00560"
     CDS             2076..>2810
                     /locus_tag="VI413_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6913137.1"
                     /translation="MEDIKQHNPEKVIIAENLTKKFGKFTAVDNISFEVEKGEIFGFL
                     GANGAGKTTAMRMLCGLSIPTAGKGEVAGYDIEIQTELVKKNIGYMSQKFSLYDDLKV
                     WENIELFGGIYGMKDAEIKEKTDKLMQLLNFENERDKLVGSLPLGFKQKLAFSVSIFH
                     SPKVVFLDEPTGGVDPITRRQFWELIYDATSHGITVFVTTHYMDEAEYCDRVSIMVDG
                     KIEALDSPKNLKKQFNAKNMDGVFQQL"
BASE COUNT          985 a          575 c          592 g          658 t
ORIGIN      
        1 tttgattcgg gaaataaatg ccgaaagcca ggcaaaacaa ctaaaatcat tgcacgaaat
       61 ccaattgata atgagcgttt accaacttaa aaacaacaca aataattgat ttttcaaata
      121 accccaaacc cgccagctga cggaacataa aatacccaat tatatgagaa ctaatatcaa
      181 acaaaattta tttaattcaa aagtgttgct ttttggatta ggcttgtcaa tacttacaac
      241 ttcatgcgga aaatcgaata acgatgcgga tgcgtcaggt actttcgaag ctacagaagt
      301 aattgtttca gcccagggag ccggccagat attgtcgttg aatgtagaag aaggccagac
      361 actcacagcc aatcagttag tcgggacaat cgacagcaca caactttatt tgcgcaaaaa
      421 gcaactgcag gcaagcggca aagccatcca aagtcgccgt ccggacatta aaaagcagat
      481 tgcagccatt gaacaacaaa ttaccacggc aaaaacagaa cgtaaacgtg ctgaaaatct
      541 cataaaagca aatgctgcca accaaaaaca actggacgat attaatgcac aaattgcggt
      601 tttggaaaaa caactcgatg cacaaaaaac catgttggaa agcagcaatc agggaattac
      661 cgacgaaagc gaagggctga catttcaaat caaacagttg gaagatcagt tggacaaatg
      721 caaaataacc agccctattg caggaactgt gttggtgaaa tatgccgaaa tgggcgaagt
      781 ggctgctccg ggcaaagccc tttttaaaat tgccgacacc aacaacatga tcctgcgtgc
      841 atacatcaca gctgatcagc taacacaagt taaagtcggt caaaccgtaa aagtaaaaac
      901 cgattcaggg aaagatggca gcaaagaata tagcggaact gtcgcctgga tttcgagcaa
      961 agcagaattt acaccaaaga ctatccagac ccgcgacgaa cgtgctaatc tggtttatgc
     1021 agtgaaaatc aacgtaaaaa atgacggttt gattaagatt ggcatgtacg gagacgctca
     1081 gtttaattga tagttgacga atatttacaa ctcaatgaat aactcaaata aaattccgga
     1141 tatagcaatt cattgcgaat ctgtcagcaa aaattacaaa aaaattgaag cccttaaaga
     1201 cattaatttc gatgtaaaca gaggtgaaat ttttggtata atcgggcctg atggagccgg
     1261 gaaaactaca ctcttcagaa ttctgacaac gctgattctg gctgataagg gaaccgcatc
     1321 cgttgatgga tttgatgtcg tcaacgatta caaagaaatc cgcaaacgag ttggctacat
     1381 gcccggccgg ttctcacttt accaggatct gaccgttgaa gaaaacctga attttttcgc
     1441 cactgttttc aacaccacca ttgaagaaaa ctacgaacta ataaaagata tctaccagca
     1501 gattgagccg tttaaaaagc gtagggcagg aaagctttcc ggcggaatga agcaaaaact
     1561 agcgttgagt tgcgcgctta ttcacaaacc cagcgtattg tttctggacg aaccgactac
     1621 gggtgttgac cctgtttcgc gaaaggaatt ctggggaatg ctgaaaaaac taaaagcaca
     1681 gggcattacc attttggttt cgacacctta tatggacgaa gccagcctat gcgaccgtat
     1741 tgcactgatt cagaacggag aattcctgac tattgacact ccaaagaata ttgtcagcca
     1801 atataaaaat aagctttggg ccgtccaaag caacaatatg cacaaattac tgattgattt
     1861 gcgcgcaaat gaaacgacca aaaactgctt cgcttttgga gacaagcacc atgtgtcagt
     1921 ggacaacgga gaggatctga gcgttaacaa cttaaatgaa ctcatggttc aaaaaggaca
     1981 cacccacatt catatttggg aaattgagcc aactatcgaa gattgcttta tgcaattatc
     2041 gcagcgataa aagcaagacg aaaggagtaa taaatatgga agacataaaa caacataatc
     2101 ccgaaaaagt aatcattgcc gaaaatctga caaagaaatt cgggaagttt acggctgtgg
     2161 acaacatctc gttcgaagta gagaaaggcg aaattttcgg atttcttgga gctaatggtg
     2221 ctggtaaaac cactgctatg cgtatgcttt gcggactcag catccctacc gctgggaaag
     2281 gagaagtagc aggttacgac attgaaatcc aaaccgaact ggtcaagaaa aatatcggtt
     2341 acatgagtca gaaattctcg ctttatgatg acctgaaagt atgggaaaac attgaacttt
     2401 ttggtgggat ctatggcatg aaagacgccg aaatcaaaga gaaaacagat aaattaatgc
     2461 agcttcttaa ctttgaaaat gaacgtgaca agctcgtcgg gtcgctccca ctcggtttca
     2521 aacaaaagct ggcattttca gtatcaattt ttcatagccc gaaagtcgta tttctggatg
     2581 agccaaccgg aggcgttgac cccatcaccc gccggcagtt ttgggaactg atttacgatg
     2641 caacttccca tggaataacc gtttttgtaa caacacatta tatggacgaa gctgaatatt
     2701 gcgaccgggt ttccatcatg gtggatggaa aaattgaagc acttgactca cccaaaaatc
     2761 tgaaaaagca gtttaacgcc aaaaacatgg atggagtttt tcaacaactt
//
LOCUS       DATDNM010000035         2207 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1178906, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000035 DATDNM010000000
VERSION     DATDNM010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1178906"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            176..1069
                     /locus_tag="VI413_00565"
     CDS             176..1069
                     /locus_tag="VI413_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEY6913138.1"
                     /translation="MFDFRLKVFYTVAKRLNFTKAAEELCITQPAVSKHIQEIESYYK
                     IRLFERNGNKIHLTKAGGVLLHYCNQIFGLYGSLEFDLNALTEIFKGKLRIGASTTIA
                     QYLVPPLLADFHKRYEDIQVSLTINNTEQIEQALNNNSIDFGIVEGQTKNTLFKYTEF
                     IRDEIVPVVAVNHALAAQKEISIDQLLKTPLLLREPGSGTLEVIAHALKPHNIKLSDL
                     KCEMQLGSTESIKLYLLHSNCMAFLSIHSILDELENNKLRIVDIKDLNLDRTFHFIQL
                     YGETEGLPEVFIEFARHYNFK"
     gene            1149..2117
                     /locus_tag="VI413_00570"
     CDS             1149..2117
                     /locus_tag="VI413_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfate exporter family transporter"
                     /protein_id="HEY6913139.1"
                     /translation="MKTTKENGSKTHLILKSIVVKICFIIIGFICLTPFISPPIALFL
                     GLFFALTIGAPFPKFNKNVSGYLLQVSVVGLGFGMNLLDSVKTGSDGMFFTLFSVVSV
                     MLIGIMFGKWLGITKVPSYLIASGTAICGGSAIAAVGPIAKANESEMSVSLATIFVLN
                     AVALFLFPVLGHWMHLTQQQFGLWAAIAIHDTSSVVGAGATFGEEALKVATTVKLTRA
                     LWIIPVSVFTSFYFKSKGDKVVIPWFILFFILAMVVNTYLNIPKTITQGIVSVSRQSL
                     TLILFFIGARLSRSIIKSVGVKPLILGVTLWFFIAIISLSFIYFLY"
BASE COUNT          655 a          408 c          423 g          721 t
ORIGIN      
        1 cacgggttgt tgagccttgc ttttagcttc gttcaagcta tatgcaaggc tcctgccttg
       61 catatagaag tgaaatatag aaagcagagc tttccttcta gctgcgacgt aggcaggagc
      121 catacgccga acagcgggga aggacacgtt tgcagtcata actaaacctt gaattatgtt
      181 cgattttcgt ttaaaagtct tttataccgt tgccaagcga ctaaatttca ccaaagcagc
      241 tgaagaactt tgcattactc aacccgccgt atcaaagcat atccaggaga tagaaagcta
      301 ctacaaaatc cggctcttcg aacgcaacgg aaataaaatt cacttgacca aagccggtgg
      361 agttttactt cattattgca atcagatatt cggactttat ggaagtcttg agttcgacct
      421 gaacgcattg acagaaatat tcaaaggaaa attgcgcatt ggagctagca ctaccattgc
      481 tcaatatctg gttccacctc ttttagccga tttccataag cgatacgaag acattcaggt
      541 gtcgcttacc atcaataata ccgagcaaat agaacaagca ctgaataaca acagtataga
      601 tttcggtatt gtggaaggac agacaaaaaa tacacttttc aaatacacag aattcattcg
      661 agatgaaatt gtgccggtag ttgcggtaaa ccatgccctg gcagcgcaaa aggaaatatc
      721 aatagatcaa ttgttgaaaa ctccgcttct gttacgcgaa ccaggatcgg gtacactgga
      781 agtaattgca catgcactga aaccacataa tattaaatta tccgatctaa agtgcgaaat
      841 gcagcttggt agcactgaaa gtatcaaatt atatttgctt cattccaatt gcatggcttt
      901 tctttcaatt cactcaattt tagacgaatt agaaaacaat aagttgcgaa ttgtggatat
      961 caaagattta aatctggaca gaacgtttca ttttattcaa ctctatggcg aaacggaagg
     1021 gttgcctgaa gtattcattg aattcgcccg gcactataac ttcaagtaat cagtcataaa
     1081 taataactat catattgctg ttcatatccg ggttaccttt gtagtgtaaa ttattccagg
     1141 taacaaaaat gaaaacaaca aaggaaaacg gaagtaaaac gcatttaatt ttgaaaagta
     1201 tagttgtaaa aatttgcttt ataattatcg gatttatttg tttaacccct ttcatatcac
     1261 cgccaattgc gctgttttta ggtttgtttt ttgctctgac tattggtgcc ccattcccaa
     1321 aattcaataa aaacgtatcc gggtacttac ttcaggtttc agtggtaggt ttgggttttg
     1381 gtatgaattt actcgactcg gtcaaaacag gttcggatgg aatgtttttt actctgtttt
     1441 cagtggtaag tgtaatgctt atagggataa tgtttggaaa atggcttgga ataaccaaag
     1501 taccatccta tttaattgct tccggtacgg ccatttgtgg cggaagtgcc atcgctgctg
     1561 ttggtcctat tgccaaagca aacgaaagcg agatgtcggt ttcattagcc acaatttttg
     1621 tgctgaatgc cgtagcactt tttctatttc cggtattagg tcattggatg catcttactc
     1681 aacaacagtt tgggctttgg gctgctattg ctattcacga tacaagttct gttgttggag
     1741 caggtgcaac ttttggcgag gaggctttga aagttgctac cactgtaaaa ctcacccggg
     1801 ctttgtggat tattccagtg tctgttttca cttcgtttta ttttaaatcg aaaggtgata
     1861 aagtagtaat tccttggttt attttgttct ttatacttgc tatggttgtc aatacttatt
     1921 taaatattcc aaaaacaatt acacaaggta ttgtatcggt ttcacgccaa agcctaaccc
     1981 tgattctttt ctttatcggt gccagattat caaggtcaat cataaagtca gttggtgtaa
     2041 aacctcttat tttgggtgtt acactttggt tttttattgc cattattagt ttatcattta
     2101 tttacttttt gtattgacaa tatgaaagta tctttacaga cttttaaaat tagagaatcg
     2161 acttttagtt ttacgacaaa taaaatcttt tatattttcc atttctt
//
LOCUS       DATDNM010000036         9482 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1285902, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000036 DATDNM010000000
VERSION     DATDNM010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 9482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9482
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1285902"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..753
                     /locus_tag="VI413_00575"
     CDS             163..753
                     /locus_tag="VI413_00575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913140.1"
                     /translation="MAKRDTYDICVQHLYDDVTKLSHLPQQQRDKLLRIRSGYTIMLE
                     FPSKKDREIILHLQNQFGIERSAAYEDLRLIKDLLGSINKQSKDWHRFRFNYRNEKAY
                     NMAELQQDPIAMDKCNNTYGKYNQLDKEDAERIPWEEIIPQLYEPTDDPSVLGIKPIP
                     NIREKIAATKKKYMEDIEDVTYEDIDIRELEKYADQ"
     gene            740..2392
                     /locus_tag="VI413_00580"
     CDS             740..2392
                     /locus_tag="VI413_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008861674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913141.1"
                     /translation="MPISKEIKQIYFNDCQRKVMLRGCKTTVVVGGRRLGKSHGIAQP
                     YLQRNMQRMPRGTHGIIAGTFQQANTRTLPGTLEAFDNIGFKRNVHYVIGRRPEPGLK
                     FEKPRLEPASYDHCITWYNGSIMPIISQDVPGSSNSMTFDSILCDEAKFLDFEKLNNE
                     TIPANGGTKAHFGHLSYHHSMMIISDMPTTKKGSWFLGYEDKCDTELIENIDGIIYEK
                     WRILEKIKEFRAKGIEPKGYLFDYYKTLCRDLEQLRSVAVDYNVFSSIENMQVLGEGY
                     IKQMKRDLPPLIFQTSILCKRVGLLKDGFYNNLNENLHYYTDFDNSYILNLEYDFNKT
                     KDLSCLQDGDLDINKPICISMDYNANINWIVAGQRSGIKLKVLKSFFVKYDRKLVELV
                     NDFCHYYRDQQCKEVIYYYDNTALGSNYAVNDSDFATVVMDTFRRNKWHVTGVHIGNP
                     LNHMDKHLLINMGLKGQKGLFPLFNKPNNEPLLLAMEQTGIYQGPEGFKKDKRGEKLA
                     ESDEDLREHRTDGTDAFDSLYIGMNNFPVESSFNSSLVSDFI"
     gene            3380..3733
                     /locus_tag="VI413_00585"
     CDS             3380..3733
                     /locus_tag="VI413_00585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913142.1"
                     /translation="MKTNLKVVEPTKTTADELTAKLEAQLQEITHKKQLADNRAVFLS
                     KKTSLQDFKKQIETEISSGNFEATKFKMSFTSGSYRDDEKFTISNTDLIQFFLCGLIL
                     KIDEEVSKIETELVG"
     gene            3827..4231
                     /locus_tag="VI413_00590"
     CDS             3827..4231
                     /locus_tag="VI413_00590"
                     /inference="COORDINATES: protein motif:HMM:NF019997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArdC-like ssDNA-binding domain-containing
                     protein"
                     /protein_id="HEY6913143.1"
                     /translation="METQVNTQAKRKFYTKRQPTEAQREAMRAKREELKVLSKGIKIL
                     VKAGKYSSVNEGLIELYAENGHSNLKTIHQWNEINMSVKKGEHALLLWGTPKKSEKKQ
                     EATTPDQEEKELEFYPLCFVFSKQQIQPTAAK"
     gene            4233..4475
                     /locus_tag="VI413_00595"
     CDS             4233..4475
                     /locus_tag="VI413_00595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913144.1"
                     /translation="MDKLLTVCRSTQGKKYTSAINIKGDYLKKYGFELGDFVKVTVCK
                     NKITIEKNVDTGLLTCMGTKNPALLTMIEGLSLSLE"
     gene            4676..5017
                     /locus_tag="VI413_00600"
     CDS             4676..5017
                     /locus_tag="VI413_00600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913145.1"
                     /translation="MKKALLLLTLIPYFSFSQIVKTDSLRKELSQIQLNQNAYAQRSQ
                     RGNFFLLLGAGGIIANIALKDKNPNVANTCLYFAGACSFVGYAIHIDSTNFLTGKRKS
                     KKKNYTNTDFY"
     gene            5260..5502
                     /locus_tag="VI413_00605"
     CDS             5260..5502
                     /locus_tag="VI413_00605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913146.1"
                     /translation="MKTNNNPVESVSAISPVEKSTTVNMADARKMLLILYKQLKQAID
                     QPTQVNFHQQHSETNVLFISGGNQIAINVTEGSQSC"
     gene            5496..5768
                     /locus_tag="VI413_00610"
     CDS             5496..5768
                     /locus_tag="VI413_00610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913147.1"
                     /translation="MLNEQQPGEELDFKLVILSRYCGEFQPATKDNVTIRKTSEEIKL
                     DIRPMADLSTNEIAAYLATHGYTIDFDDTTPVWLMRKDHELELREH"
     gene            5789..6202
                     /locus_tag="VI413_00615"
     CDS             5789..6202
                     /locus_tag="VI413_00615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913148.1"
                     /translation="MKKVPNVISHNPTHKCHSNECDQDGEMCMELYKEIYLCRSHFRE
                     FIDKTTDELRTYLSDKGFDEKTVNITTHQPIHFVNKNLQIYFRPMFLEWRIKDKSKLI
                     NDFDITHVRFDFDTFTISDQEKQRLWSVFSEFYKG"
     gene            6274..7374
                     /locus_tag="VI413_00620"
     CDS             6274..7374
                     /locus_tag="VI413_00620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913149.1"
                     /translation="MAITQEPEANGLYFQKNIPDIIIQKEAGDIDMRTLELLIDGISV
                     ISEKYVFDTTGEIRIRNIGDIVEKYFTDSKLILPVSFSLTDEVNPAYTIPFQALKCES
                     DMIVEASSWTATNFLTRAYREKRTSKSNNEYLSFLHRSTYGFCLLRYRIVYLLNGIIT
                     ELTGFVNSELIGIAAADKITTFNASAVTILTYAGLAPETEVIQYDLWITGLDFEMNKY
                     TFLVDYSVYRNKKYFVFINSFGVLETFTGTGQTDTKKTPEYSLGNIKNHYRKLTQDFV
                     AEKTAYSGFLSDVEMEWIDDLLISYDVALYTPGVTGAAEEITFTTVEKTDTEANVLQA
                     FSFSYRRADNNNLQFTNAAKGVFDNTFDETFN"
     gene            7602..8990
                     /locus_tag="VI413_00625"
     CDS             7602..8990
                     /locus_tag="VI413_00625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913150.1"
                     /translation="MTEFDQQVFEIPVDEIAARALDKINEGVTVFDVDQSQTPTRISG
                     APESFRGFVPWGDDNLRPNNVLALRRNDEVMSSNIFFNILTGYGAGLKIEHPEEGKKI
                     TNKEVLDFFKYNRPVKYWLEQQTDIKHFFFTVTVLILSGDGQKIVKIKHKDATYCRFE
                     TCNPKTGRIEHVYFANFEKGTPQWENCEVIELLDESDPLGDLEMRMGKIPNEEGKNNT
                     PTKVRKFAMRNAIPIPGNKYYPFPYSWAVFNSGWYDIKQLIAEGKKIKFKNGLVIKYQ
                     VEINRDYWTNLFRDENITDKTKQTERIKKEKENIKSFLTGMVNAGKVWFSGFYVDPLG
                     KENSMIRINVINPTKEGGDWIEDTEEASNMECYADGIHPSLIGAVPGKSKGGMSGSDK
                     RELFTIKQALDVPIRQILAEPYFVIINYNGWENDVKIDTPFMQLTTLDEGTSAKTKTA
                     DPNANSNSDNQD"
     gene            8992..>9482
                     /locus_tag="VI413_00630"
     CDS             8992..>9482
                     /locus_tag="VI413_00630"
                     /inference="COORDINATES: protein motif:HMM:NF042868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6712 family protein"
                     /protein_id="HEY6913151.1"
                     /translation="MIITTIEEFIKYIPTAEGSNFTAIKPYLAEAENQLIGLFLGNDL
                     YNYLETIVSPDPEATPPVEAGADYQMKVIFSRLLCLQAYENAIPFVDLIQTNNGFAVV
                     SNSNQAPASKERVERLIEWVESQIYINSDMLIQSVMKSADALTAWTTFSEFEELTSCL
                     FLTG"
BASE COUNT         3283 a         1663 c         1832 g         2704 t
ORIGIN      
        1 cgatatcggt aaaaacttca ggtcctggca ttgcttatcg aaaaggaaaa acacaaacaa
       61 tcctggcact tcgccggcag gaaattgaat tgggaaaagc aggatccaca attggaattg
      121 aattgacaca aaaatacatg cttgagcaac aactaaacga aaatggctaa acgagacact
      181 tacgatatct gtgttcagca cctatacgat gacgtaacaa agctatcaca cctaccacag
      241 caacaacgtg acaagttgct acgcattcgc tcaggctata ctattatgct tgagttcccg
      301 tcaaaaaaag accgggaaat aattctacat ctccaaaatc aatttggaat cgagcgcagc
      361 gcagcatatg aggatttacg attgatcaaa gatttattgg gatcaataaa caagcaatca
      421 aaagactggc ataggttcag gttcaattat aggaatgaaa aagcttacaa catggctgag
      481 cttcagcagg accctatagc catggataaa tgtaataata cttatggcaa gtataaccaa
      541 ctcgataagg aagatgctga gcgcatccca tgggaagaaa tcattccaca attgtatgag
      601 ccaaccgatg atccttcagt tctcggaata aaacctattc caaatatcag agagaaaata
      661 gctgcaacta aaaagaaata catggaagac attgaagatg ttacctatga agatattgac
      721 attcgtgaat tagagaaata tgccgatcag taaggaaata aaacaaatat atttcaacga
      781 ttgtcaacga aaagtaatgc ttcgtggctg caaaaccaca gttgtagttg gtggtcgtcg
      841 tttggggaag tcgcacggaa ttgctcaacc atatcttcag cgcaatatgc agcgcatgcc
      901 gcgcggtacc catggcatca ttgccggtac atttcagcag gctaatacac gaacattgcc
      961 tggtacattg gaagcttttg acaatattgg atttaagcgt aacgttcact acgtaattgg
     1021 tcgacgtcca gaacctggtt taaaattcga aaagccacga ttagaacccg caagctacga
     1081 tcattgcata acctggtaca atggaagcat tatgccaatt atttctcagg atgttcccgg
     1141 atcatctaac tccatgactt tcgactcaat tctttgcgat gaagccaagt tcctggactt
     1201 cgaaaaattg aataatgaaa ccattcctgc caatggtgga actaaagccc atttcggtca
     1261 tttgtcttat catcactcca tgatgataat ctccgatatg ccaactacga agaaaggtag
     1321 ttggttctta ggatatgagg acaaatgcga tactgaacta atcgaaaata tcgacggaat
     1381 catttatgaa aaatggcgaa tactcgaaaa aataaaagaa tttagagcaa aaggtattga
     1441 gccaaagggt tatttatttg attattacaa aacattatgt cgtgatttag agcagcttag
     1501 aagcgttgca gttgattata atgtatttag ttctattgaa aacatgcagg tgttaggtga
     1561 aggttatatc aagcaaatga agcgagattt accgccgttg atcttccaaa cctcaatact
     1621 ttgcaagcgt gttggtttac tcaaggatgg tttttataat aacctgaatg aaaatctaca
     1681 ctattacact gatttcgata actcttatat tcttaaccta gagtatgact tcaacaaaac
     1741 aaaagactta tcatgccttc aggatggcga tttagatata aataagccta tctgcatttc
     1801 aatggactat aacgccaaca tcaactggat agtggcagga caacgctcag gcattaagtt
     1861 gaaggtattg aaatcattct ttgtcaagta tgatcgtaag ttagttgagt tagtcaatga
     1921 cttctgccat tactatcgtg atcaacaatg caaggaagtg atttactatt acgacaacac
     1981 agcactgggt agtaactatg cagtcaatga cagtgatttt gcaactgttg tcatggacac
     2041 cttcagacgt aacaagtggc acgttacagg tgtgcacatt ggcaatccac ttaatcacat
     2101 ggataagcat ctacttatca acatgggatt gaaaggacag aaaggtttat tccctctatt
     2161 caacaaaccc aacaacgaac ctctgttgct tgctatggaa caaacaggaa tctatcaggg
     2221 accagaaggg ttcaagaaag ataagcgcgg agagaagctc gcagagagcg acgaagactt
     2281 acgcgaacac cgaaccgatg ggactgacgc atttgatagt ctttacattg gtatgaataa
     2341 cttcccggtt gaatcctcat tcaactccag ccttgtgagc gacttcattt agtcgctcac
     2401 ttcatgtcat tacatctcac atccaatgct tccaaaacac aatgcatgca tttatttttg
     2461 taggaagctg agttgtcatt acacaatcaa tgctcctttc aggacattga tagagtaatg
     2521 gccgttttac cacccgagtt tcttaattta tgccattata ttaacttatt gtgtcatata
     2581 acgtactttt caagccttgt aatgacaaat gagcgagagg gcggggcggg gtctatcgac
     2641 gtgaacaaac ctttttcaaa ggtttggaaa gacgtttttt gttgattaat agcaatttgg
     2701 catactgaaa gccggaaaac accaataaat atataaagaa atgataccaa acagggtata
     2761 agtatttaaa ataaaaccag ttgcattaat tttattttat acattctctt ttcttataca
     2821 catcataacg ttatatgtta tatttaagag aaagaaataa taaacacgct aaaaaaatat
     2881 cgtgcatact actttactac cttactattt aagttttaat ttattggtta atagttattt
     2941 aatggtagta acctttgaaa ttttatattt atataaggtt actactactt actaccaaaa
     3001 taaggttact actaaaaaac atatataact atcatataat aaggtaatta aaggtagtat
     3061 tatagtagta agctatttta aaaaattttt tttcattgaa aaatacatat atttaagtca
     3121 tatatattca ttattagtta cttacttata aaatttgagt gtgaagatta aaaagttttt
     3181 ttattctttc cttgaaaata tatgtagtta ttagctgcat ttaaatctaa gcatgtttaa
     3241 aataagatta taatgcattg atattcagcg atataagttt gtgtatgtcg ttttttttga
     3301 gtaatttagc agagcgaaag ggaaatcgag cctcccgatg cataaacttt ttattaactt
     3361 tttacaaaaa caaattttta tgaaaaccaa tttgaaagtg gttgaaccaa ccaaaacaac
     3421 agccgacgag ctaaccgcaa aacttgaagc acaacttcaa gaaattaccc acaaaaaaca
     3481 gcttgcagat aacagagctg ttttcctttc caaaaaaaca tcgttgcaag attttaaaaa
     3541 gcagattgaa accgaaatta gttcgggaaa ttttgaagct acaaagttta aaatgtcatt
     3601 cactagcgga agttaccgag atgatgaaaa attcaccatt tcaaatactg atttaattca
     3661 gttctttcta tgtggactaa ttttaaagat tgacgaagaa gtttctaaaa ttgaaactga
     3721 actggtagga taaaaaaata cgtgtgagac atggtttcga gccgtctcac acgtaaaaac
     3781 tttttattaa ttcaaaaact aatttttaaa tcaacgatgc aaaagtatgg aaactcaagt
     3841 aaatacacaa gcaaaacgca aattttatac taaacgccaa ccaaccgaag cacaaaggga
     3901 agccatgagg gcaaagcgtg aagaattgaa agtattatca aaaggaatta agatactcgt
     3961 taaagccggg aaatatagtt cagttaatga gggattaatt gagttgtacg ccgaaaatgg
     4021 gcatagtaat ttaaaaacaa tccatcaatg gaatgaaatt aatatgagcg taaaaaaggg
     4081 cgaacacgct ttgttattat ggggaacgcc taaaaaatca gaaaaaaagc aagaagccac
     4141 tactcccgac caggaagaaa aggaactgga attttatccg ctgtgttttg tgttttcaaa
     4201 acaacaaatt caaccaacag cagccaaata acatggataa acttttgaca gtgtgccgaa
     4261 gtacacaagg taaaaaatat acatcagcca taaacataaa aggcgattat cttaaaaagt
     4321 acggttttga attgggcgat tttgtaaagg tcacagtatg caaaaataaa attacaattg
     4381 aaaaaaatgt agatacagga cttttgactt gtatggggac taagaacccc gcactgctca
     4441 caatgattga agggcttagt ttatcgctgg aatagtcagg aaacgccaat aaatacgctt
     4501 cacgctctaa ttatggaggg tgaagctttg tgtttggact acttttgtcc cgccaaaagt
     4561 agcaaaaggc ggaaaacgcc cgaaataggg cagagttgat tttttagtcc ggtgaataac
     4621 cggccttttt ttgtttaaaa ttttgtatct ttgtgtaaat tttaaaaata atagtatgaa
     4681 aaaagcattg ttattattga cattaatacc ttatttttct ttttctcaaa tagttaagac
     4741 tgattcttta aggaaagagt taagtcaaat acaactaaat caaaatgcct atgcccaaag
     4801 gtcgcaaaga ggaaatttct ttttgttgct cggagctgga ggaataattg ccaacattgc
     4861 tttaaaagat aaaaatccga atgtggcaaa tacatgttta tattttgccg gggcttgttc
     4921 ttttgttggt tatgcaatcc acattgatag taccaacttt ctaacaggaa aaaggaaatc
     4981 aaaaaagaaa aattatacaa atacagattt ttattgattt ttttattgcc aattcaaata
     5041 tacttccgat atttgtacag cgaaacaaat aaaaacagag tagttgaaag tactgcccat
     5101 tttctttagg gcttttttta tgcccaaacc gtccacataa aataagacgg ctgtatcttc
     5161 cgataagttt ttgagccctg ctctggattt atttgtttcg cgaccggaaa gtgtacagcc
     5221 gtttttctgt accataaatc gcgaaacaaa taaatcaaaa tgaaaacaaa caacaaccca
     5281 gtcgaatccg tttcggctat ctctccagtc gaaaagtcga caaccgtaaa catggcagat
     5341 gcacgtaaaa tgcttttgat cctgtacaaa caattaaaac aagcaattga ccaacctaca
     5401 caggtaaact ttcaccaaca gcacagcgaa acaaatgtgc tatttatttc aggaggaaac
     5461 caaattgcta ttaatgtgac ggaaggatcc caatcatgct aaacgaacaa caaccaggtg
     5521 aagaactgga cttcaagctc gtaattctct cccggtactg tggcgagttc caaccggcta
     5581 cgaaagataa tgtaacgata cggaaaacga gtgaagaaat taaactcgat atccggccaa
     5641 tggctgattt atctaccaac gaaattgcag cctatttggc tactcatggc tacactatag
     5701 actttgacga cactactccg gtgtggctca tgcgaaaaga tcacgaactg gaacttcgcg
     5761 aacattaaaa tattcatata tttgcattat gaaaaaggta ccaaatgtaa tcagtcataa
     5821 tcctacacat aaatgtcata gtaatgaatg cgatcaggat ggtgaaatgt gtatggaatt
     5881 atataaagaa atatatcttt gtaggtctca tttccgtgaa tttattgata aaactacaga
     5941 tgaattgcgt acttatttgt ctgataaagg attcgatgag aaaacagtca atattacaac
     6001 tcatcaacca attcattttg taaataagaa tcttcagata tatttcagac caatgttctt
     6061 agaatggaga ataaaagaca aaagtaaatt gataaatgat ttcgacatta ctcatgttag
     6121 atttgatttt gatacattta ctatttctga tcaggagaaa caaagattat ggagtgtatt
     6181 ttctgaattt tataaaggat agtttttctg tcttttttta ccataagcgg ttggatttaa
     6241 tttgtatcaa caaattattc aaccgctttt tttatggcta taactcaaga accggaagct
     6301 aacggactgt attttcagaa aaatattccc gatatcatta ttcagaaaga agctggagat
     6361 attgatatgc gtactttaga gctattgatt gacggaattt ctgtaatttc tgaaaaatat
     6421 gtatttgata ctaccggtga aatccggatc cggaatattg gggatatagt tgaaaagtat
     6481 ttcacggaca gtaaattgat tcttccggta tcatttagcc tgactgacga agtaaatcct
     6541 gcatatacta ttccgttcca ggcattaaag tgcgaatccg atatgattgt agaagcaagt
     6601 tcctggacag ctaccaactt tctcacccgg gcataccgcg aaaagcggac ttccaaaagc
     6661 aataacgaat atctttcatt tctgcacaga tcaacttatg gattctgttt gctcagatat
     6721 cgaatagttt accttctaaa tggtataatt acggagctta ccggttttgt aaattctgaa
     6781 ctaatcggaa ttgcagctgc agataagatt accacattca atgcttcagc tgtaactatt
     6841 cttacttatg ccggattagc tcccgaaact gaagtaatcc agtacgatct atggattacc
     6901 ggtttagatt ttgaaatgaa taagtataca ttcctggttg actactctgt ttatcggaat
     6961 aaaaaatatt ttgtatttat aaattcattt ggagtacttg aaacattcac cggtaccgga
     7021 caaaccgaca ctaaaaaaac tccggagtat agcctgggga atatcaaaaa ccactaccgc
     7081 aaactaacgc aggattttgt tgctgaaaaa acggcctata gcggtttcct ttcagatgtt
     7141 gaaatggagt ggattgatga cctgctgatc agttacgatg tggcacttta cacgccaggc
     7201 gttacgggag ccgccgaaga aattacattt actacggtag aaaaaacaga cactgaagcc
     7261 aatgtacttc aagcattttc attcagctat cgacgtgcag ataataataa cctgcagttt
     7321 acaaacgctg caaagggggt atttgataat acgtttgacg aaacatttaa ttgatatgtt
     7381 gcacataagt atattgagaa aaacgttgaa ttcgaaaaag gaattcaatt gcaaggtttg
     7441 gacatcaacc ggtgatataa tggtttgcaa taaggtagtt tgtacttcga actatcataa
     7501 agggactgct aaccttatgt ttactgagag ccgtgaagta cgcaaggtga gagtaatttg
     7561 catttttgaa ttaaacgacg aagaaattta tatttgatat tatgacagaa tttgaccaac
     7621 aagtttttga aattccggtt gacgaaatcg cagctcgcgc cctggataaa ataaatgaag
     7681 gtgttaccgt ttttgatgtt gatcaaagcc agacacctac acgtatatca ggcgcaccgg
     7741 aaagtttcag gggattcgtt ccgtggggag atgacaatct tcgccccaat aacgtactgg
     7801 cattaaggcg aaatgacgaa gtaatgtcgt cgaatatatt tttcaatata ctaaccggct
     7861 atggtgcagg gttgaaaatt gaacacccgg aggaaggtaa aaaaatcacc aacaaagagg
     7921 tacttgattt tttcaagtat aaccggccgg tgaaatattg gttggagcaa caaactgata
     7981 tcaagcactt tttctttact gtaactgtgc ttattttgag tggtgacgga caaaaaatag
     8041 tgaagataaa acacaaggat gctacttatt gccgttttga aacctgtaat ccgaaaacgg
     8101 gtaggataga gcatgtttat tttgccaact tcgaaaaagg tactccacag tgggaaaatt
     8161 gcgaggtaat agaattgctc gacgaaagcg atccgcttgg cgatttggaa atgcgtatgg
     8221 gaaaaattcc aaatgaagaa ggaaaaaata atacgcctac aaaggttaga aaatttgcga
     8281 tgcgcaatgc gatcccgatt ccgggaaaca agtattatcc gtttccgtac agctgggcag
     8341 ttttcaatag cggttggtac gacattaagc aactgattgc tgaaggtaaa aaaatcaagt
     8401 tcaaaaacgg gttggtcatt aaataccagg ttgaaatcaa tagagattat tggactaatt
     8461 tatttcgtga cgaaaatata acggataaaa ccaaacaaac cgagcgaatt aagaaggaaa
     8521 aggaaaatat taagtcgttc ttaaccggca tggtgaatgc aggaaaagtt tggttctccg
     8581 gattctacgt tgatccattg ggaaaagaaa attcaatgat caggatcaat gtcatcaacc
     8641 cgaccaaaga gggtggcgat tggattgaag atactgagga agccagtaat atggaatgtt
     8701 atgccgacgg tattcacccg agtttgattg gtgcagtacc gggtaaatcg aaaggtggca
     8761 tgtcggggag cgataagcgc gaactattca ctataaaaca ggcattagac gtgcctattc
     8821 gtcagatttt ggcagagcct tattttgtga taatcaatta taacggttgg gaaaacgatg
     8881 tgaaaataga tacaccattt atgcagctga caacgcttga cgaaggtact tcagctaaaa
     8941 caaaaacagc cgatccaaac gctaattcaa actcagataa tcaagattaa tatgataatt
     9001 accactatag aggaatttat aaaatacatt cctacagccg aaggcagtaa ttttactgct
     9061 attaaaccct atttggcaga ggccgaaaat caacttatag gtttattcct gggcaatgat
     9121 ttatacaact atctggaaac gatcgtttcg ccggatcccg aagcaacacc gccagttgaa
     9181 gcgggagcgg attatcaaat gaaagttatt tttagccgcc ttctttgcct tcaggcgtat
     9241 gagaatgcca ttccatttgt tgacctgatt caaacaaaca atggttttgc agtggtgagt
     9301 aattccaatc aggcaccggc aagtaaagaa cgtgtagaac gattgattga atgggttgag
     9361 agtcagattt atatcaattc agatatgctg atccaatcgg ttatgaaatc ggccgatgca
     9421 ttgacagcat ggactacttt ttctgaattt gaggaattga ccagctgcct ttttctgacc
     9481 gg
//
LOCUS       DATDNM010000037         5074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1286000, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000037 DATDNM010000000
VERSION     DATDNM010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5074
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1286000"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1215
                     /locus_tag="VI413_00635"
     CDS             <1..1215
                     /locus_tag="VI413_00635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913152.1"
                     /translation="FFRGGGATVRLGKFNLSGFYSNKMIDGDTLNGTFATIIKTGYHR
                     TQTELSKKHTVNQQILGGNLTLTFSNFLLGFTAVHTLLDNRLQPDKTVYNYFYFSGDK
                     QITAGIHYRMRLKKLNIFGETAMTDNGSIATINGFSFSPLSQVSLVALHRYYSPEYDT
                     FYASSFSETSRINNESGLYLGAEVHPFRKWKLAAYADSYRFAWPKYGIDAPSIGKDYL
                     LQADFAPKRNIAMFWRFRFEEKQTNLSTTGVVMPVVVPLQKTSLRYQLTYSYGNFSFK
                     NVLEGNLSRQGETDWTYGIIASQDVSYAFQTIPLKMDFRYQFFDAVDYENRFYSYEKD
                     VLYAFSIPMYFGLGNRYYLNLKYELNNNLSLWFKIAQTVYADDRETLSSGNETIPGNR
                     KTDMRFLLKWEF"
     gene            1493..2491
                     /gene="pta"
                     /locus_tag="VI413_00640"
     CDS             1493..2491
                     /gene="pta"
                     /locus_tag="VI413_00640"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018359562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008959 - phosphate acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEY6913153.1"
                     /translation="MDLLEKIMARAKANLQRIVLPEGTEIRTLKAADIILKEKAAKLI
                     LIGNEAEIKKLAAENNLNNIAEATIVDPETDAKMGDYANLLFEIRKSKGMTMDEAAKL
                     AKDPLYLGCLMIKNGDADGELAGAQNTTGNVLRPAFQIVKTLPGIKVVSGALIMFTPT
                     TQYGENGMLVFADCAVNPNPNAEELAQIAVCTADTARVICGYEPRVAMLSFSSKGSAK
                     HELVDKVVEATRIAKEMAPELMIDGELQADAALVPEIGQSKAPGSKIAGHANVLVFPD
                     LQSGNIGYKMVERFSGAQAVGPILQGMAAPINDLSRGCSVDDIVRMITITANQAMK"
     gene            2585..3541
                     /locus_tag="VI413_00645"
     CDS             2585..3541
                     /locus_tag="VI413_00645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HEY6913154.1"
                     /translation="MAEEIIEAIERYGLSKRNRKRTLFSRIGVVGCGKEGSVIATTAA
                     LKGMEVVFFEPSEERIANAYARIEEKLDKKIENWGLTQNEKKAIIGRIQGTSAYEDFN
                     GCDFVIEAIRYDDNTGERRVQQRKEVFRKLESVLSEKAIIASNVSTVVVTELASEMEH
                     QERCIGLHFLSNIPDSQIIEIVRGLNTSDETFEKVCLFARLINHDYVPVMESSGLISI
                     RLFLIQLNEACSILMEGIASVEDIDRVLTVGFGHRQGVFRTADQMGIEKIVKLLENLY
                     EEYGHVKYKPSPILLRLWRAKHFGVSRGKGFYAYDEAGNMIK"
     gene            3558..4766
                     /locus_tag="VI413_00650"
     CDS             3558..4766
                     /locus_tag="VI413_00650"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEY6913155.1"
                     /translation="MKVLVLNCGSSSIKYKLLDMEKNLELGSGAVEKIGMKGSFLKHT
                     RPDGKKVMLRGEILEHQIGIEYILGILTSEKHGCIKSLEEIGGVGHRVVHGAEKFNSS
                     VLITDEVIQKLVECIDIAPLHNPPNLAGIRAISELMPSTPQVGVFDTAFHQTMPDYAY
                     MYGIPYSLYTKYGIRRYGFHGTSHRYVSKQAAEFLGLDYYNSKIITAHIGNGVSVTAI
                     ENGKSIDTSMGFTPIEGTMMGTRSGDVDLGVVTFLMEKEMIGASAVSTLFNKHSGMLG
                     ISGVSSDMRDIDKAVNEGNDRARLAREMYVYRLRKYIGAFAAAMGGTDAIVFTGGIGE
                     NHVFTRRYICEGLGFMGVKIDYDLNAVSQGIAVKLSSEDSHVKVAVIPTDEEFMIASD
                     TIEILKNRGN"
     gene            4959..>5074
                     /locus_tag="VI413_00655"
     CDS             4959..>5074
                     /locus_tag="VI413_00655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004314424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913156.1"
                     /translation="MKILVLNCGSSSIKYKLLDMQTNEELGSGAVEKIGMKGS"
BASE COUNT         1513 a          919 c         1177 g         1465 t
ORIGIN      
        1 ttctttcggg gtggaggggc gactgtccgg cttgggaagt ttaatttgtc tggtttttat
       61 tccaataaaa tgattgacgg cgacacgctg aacggaactt ttgcaacgat tattaaaaca
      121 ggttatcacc gaacgcaaac tgagctaagt aaaaaacaca cggtgaatca gcaaattttg
      181 ggtggaaacc tgactctgac tttctctaat tttctattgg gttttacggc agttcataca
      241 ctgttggata accggctgca acctgataaa acggtttaca actatttcta tttctcggga
      301 gataagcaaa tcaccgccgg aattcactac cggatgcggt tgaaaaaact taatatcttt
      361 ggcgaaacag ctatgactga caacgggtca atagctacga tcaatgggtt ttcgttcagc
      421 ccgttgtcac aagtgagtct ggtggctttg catcggtatt attcgcctga atacgatacg
      481 ttttatgctt cctcgttttc agaaacatcg cggataaata acgaaagtgg tttgtatctg
      541 ggagccgaag ttcatccgtt ccggaaatgg aaactggctg cgtatgccga cagctaccgc
      601 tttgcgtggc caaaatacgg cattgatgca ccttccattg gcaaagatta tttactgcag
      661 gctgattttg ctccgaaacg gaatattgcc atgttttggc gtttcaggtt cgaagaaaag
      721 caaaccaatc tttccacaac gggtgttgta atgccggtgg ttgtgccgct tcagaaaact
      781 tccctgcgtt atcagttgac atattcgtat ggcaatttca gctttaaaaa tgtgcttgaa
      841 ggaaatctgt cccggcaagg tgaaactgat tggacgtatg gtattatagc ttcacaggat
      901 gtaagttatg cttttcaaac cattccgttg aaaatggatt tccgttatca gtttttcgat
      961 gcagtggatt acgagaaccg tttttattcc tacgaaaagg atgtgcttta cgctttttcc
     1021 attcccatgt attttggtct tggcaaccgt tattacctga atttgaagta tgagctcaat
     1081 aacaacttat cgctatggtt taaaatagcc caaactgtgt atgccgatga tcgcgaaacg
     1141 ctaagcagtg gcaatgaaac tattccgggc aaccggaaaa cagatatgag gtttttgctg
     1201 aaatgggagt tttaagttta aatttaatgt tgcagaaaaa ctgtattcaa caggaatttg
     1261 ttatgtattt ttaatctgat aaaaattgaa taaaaaaccg gatattccct tgatttttac
     1321 acgcgaaaat gatgttttta ttatataatt tgacatacgc tcaaatattt acgtaaaact
     1381 gccatctctg gattgcaatt ttagaaaatt gccgtatctt tgtactgttt ttcagcccga
     1441 agataactgc ctctcgccga atagactagt atacactaca tatcttaata aaatggattt
     1501 attagaaaaa attatggcgc gtgccaaggc aaatttacaa cgtattgttt tgccggaagg
     1561 taccgaaatc cgcacattga aagcagcgga tattattttg aaagaaaaag ctgccaagct
     1621 gattctgatt ggtaatgaag ctgaaataaa gaaactggcg gccgaaaaca acctaaacaa
     1681 cattgctgaa gctacaattg tagatccgga aacggatgca aaaatgggcg attatgccaa
     1741 tttgcttttc gaaatccgca aaagtaaggg aatgacaatg gacgaggcag ctaaactggc
     1801 taaagatccg ttgtacctgg gctgtttaat gattaaaaat ggtgatgctg atggtgaatt
     1861 ggcgggagct caaaatacta ccggaaatgt acttcgtccg gctttccaga ttgtgaaaac
     1921 attgccggga atcaaagtgg tttcgggagc attgatcatg tttacgccaa ctactcaata
     1981 tggagaaaac ggaatgttgg tgtttgccga ctgtgctgta aatccgaatc cgaatgctga
     2041 agaattggct cagattgctg tttgtacggc agatacagcc cgtgtaattt gcggatacga
     2101 accacgtgtg gctatgttga gtttctcgtc gaaaggaagc gctaaacacg aattggttga
     2161 caaagtggtg gaagctaccc gtattgccaa agaaatggcc cccgaattga tgattgacgg
     2221 tgaattgcaa gccgatgcag cactggttcc tgaaatcgga caaagcaaag cgcctggaag
     2281 caaaattgcc ggacatgcca acgtgttggt gttccccgat ttacaatcgg gaaatatcgg
     2341 ttacaaaatg gtggaacgtt tctcgggagc acaagctgta gggccaattt tacagggaat
     2401 ggctgcacca atcaacgacc tttcgcgtgg ttgctcggtg gatgatattg tgcggatgat
     2461 taccattact gcaaatcagg caatgaaata aataacagta gtaaggagca agaggtaaga
     2521 ggcaagtaga taagtccgat tacttacctc ttactgctta cctcttacct ctaaataaaa
     2581 aattatggca gaagaaatta ttgaagcaat tgaacgctac ggattaagca aacgtaaccg
     2641 taaacggacg ttgttttcgc gtattggcgt ggttggctgc ggtaaagaag ggagcgtaat
     2701 tgctactaca gcagccctga aaggtatgga agttgtgttt ttcgaaccaa gcgaagaaag
     2761 aattgccaat gcttatgccc gcattgaaga gaaacttgac aaaaaaatcg aaaactgggg
     2821 attgacccaa aacgagaaaa aagcaattat aggtcgcata caaggaactt cggcttacga
     2881 agacttcaat gggtgcgact ttgttattga agccattcgt tacgatgaca ataccggtga
     2941 acgtcgcgtg cagcaacgta aggaagtttt cagaaaactc gaatctgttt tgtctgaaaa
     3001 agccattata gcttccaatg tttccacggt tgttgttaca gaacttgctt ctgaaatgga
     3061 acatcaggaa cgttgcattg gcttgcattt cctctcgaat atccccgatt cacaaattat
     3121 tgaaattgta cgtggcttaa atacttcgga cgaaacattt gaaaaagttt gtctttttgc
     3181 ccggttaatc aatcacgatt atgtgccggt aatggaatca tctggtttga ttagtatccg
     3241 tttgttcctg attcagttaa atgaagcttg ttctatcctg atggaaggaa ttgcttcggt
     3301 tgaggatatt gaccgcgtat tgacagttgg atttggccac cgccaggggg ttttccgcac
     3361 tgcagatcaa atgggaattg aaaaaattgt gaagttgctt gagaatttgt acgaagaata
     3421 tggtcatgta aaatacaagc cgtcgcctat tttgcttcgt ttgtggcggg caaaacattt
     3481 tggtgtaagc cgtggaaaag gtttttatgc atacgacgaa gctggtaata tgattaaata
     3541 agcgaaagga aaaggtaatg aaggtattag ttttaaattg tggtagttcg tcgattaaat
     3601 acaagttgct ggatatggaa aaaaatctgg aacttggatc gggagctgtt gaaaagattg
     3661 gaatgaaagg ttcttttctg aagcacacaa gacccgatgg aaaaaaggtc atgttgcgag
     3721 gagaaatcct ggagcatcag atagggattg aatatatttt aggaattctt accagtgaaa
     3781 aacatggttg catcaagtca ttggaagaaa ttggcggggt aggtcaccgg gtagttcatg
     3841 gagccgaaaa attcaattcg agtgtactta ttactgacga agttatccag aaactggttg
     3901 agtgcattga cattgctcct ctacacaatc cacccaattt agccggtatc cgtgctattt
     3961 ccgaacttat gccttcaacg ccgcaggttg gtgtatttga tacagctttc catcaaacca
     4021 tgccggacta tgcttatatg tatggaattc cttattcgtt gtacacaaaa tacggtatcc
     4081 ggcgctacgg tttccacgga acaagccacc ggtatgtatc taaacaggct gctgaattcc
     4141 tggggctgga ttattataac tcaaagatta ttactgccca tattggtaac ggtgtgtcgg
     4201 taacggctat agaaaacgga aaatcaatag atacttccat gggtttcacc ccgattgaag
     4261 gaaccatgat gggaacccgt tcgggcgatg tggatttggg tgtggtaaca ttcctcatgg
     4321 aaaaagaaat gattggagcc tcggcggttt ccaccttgtt taataaacat agcggaatgc
     4381 ttggaatttc gggtgtttcg tcagacatgc gcgatattga caaagcggtg aatgagggca
     4441 acgacagggc ccgtttggcc cgtgaaatgt acgtgtaccg cctgcgcaaa tatattggtg
     4501 cttttgctgc tgcaatgggt ggaaccgatg ctattgtatt taccggtggt attggtgaaa
     4561 accatgtttt tacccgtcgt tatatttgtg agggactcgg gtttatgggt gtaaaaattg
     4621 attacgacct gaatgccgtt tctcagggca tagctgtgaa gcttagctcc gaagattctc
     4681 atgtaaaagt tgctgttatt cctactgacg aggaatttat gattgcttcc gatacaattg
     4741 aaatattaaa gaatcgggga aactgattct aaccaaatca cagtcagagc ctaaacctaa
     4801 gtacttctgt tttttataat atagaaatta attgcctcta acctgggcag tataattatc
     4861 agatttaatt ttctatattt gtaaataaat gacatttata gattataaat ttatcctcta
     4921 atttacagga aacaattcta atactagaat cacaaaatat gaaaatactt gttttgaact
     4981 gtggaagttc atctataaag tacaaactgc ttgatatgca gaccaacgaa gaactgggct
     5041 cgggtgctgt tgaaaaaatt ggcatgaaag gctc
//
LOCUS       DATDNM010000038         2244 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1286151, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000038 DATDNM010000000
VERSION     DATDNM010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1286151"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..425)
                     /locus_tag="VI413_00660"
     CDS             complement(<1..425)
                     /locus_tag="VI413_00660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913157.1"
                     /translation="MRWNKQATGLFLFSIIAFVLPVRLSAQYGEMGGMKGLASMLPSE
                     GYVVLSNGDTLHGKIVWSLKYVENNPVEIKFTPESGPAKTYNASEIRGFGNYIKSMSD
                     DYAGPGQMENYISVPSIKKGVPVFMNRLLDGKITVFQNR"
     gene            complement(1115..1978)
                     /locus_tag="VI413_00665"
     CDS             complement(1115..1978)
                     /locus_tag="VI413_00665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913158.1"
                     /translation="MKTQQPDYSVNLNVQTKFIFSTSGSASSIVKHNDAIRKLGLNLV
                     YFTIADEVTPEGYAALLRSPIARGAAVTGRGGLKSDIIPFLDEVEPLALKTLAVNTVV
                     NNNGKLYGYNSDAIGLKTALMKGIETSGLDIKTAVIYGNGGVSGVAFHVLLELGIRVT
                     MVGRSPGRVQEKKKQLGIEHVAHFEGPYDLVVDATPVSSDPDFLNAPGLSSLLGGCKM
                     VFCHNMPEKDNKTNYLEQYCRENNLYYIPGKWMYNAQLAKQYRLLFEGYTKPDGSPIS
                     EQDILKTWKVE"
BASE COUNT          655 a          443 c          442 g          704 t
ORIGIN      
        1 cttctgtttt ggaatacggt tattttacca tccaacaacc tgttcataaa caccggaacg
       61 ccttttttaa ttgatggaac acttatatag ttctccattt gcccggggcc ggcatagtca
      121 tctgacattg atttgatata attcccaaat ccacgtattt cgcttgcatt gtaggtttta
      181 gcagggccgc tttcaggagt aaactttatt tctaccggat tattctccac gtatttcagg
      241 ctccatacaa tttttccatg caaggtgtcg ccattgctga gtacaacata cccttcggaa
      301 ggcaacatag acgccaaacc tttcattccg cccatttctc catactgggc tgataatctg
      361 accggtagca caaaagcgat aattgaaaac aggaataacc ccgttgcttg tttgttccaa
      421 cgcatgacag taatttttaa aagtcaggtt aatagtaagc acgatagcaa tgattataaa
      481 acaggaccca taaatcagat gcaaactgaa agttgatctt gatatgtatg aattaagtaa
      541 tggccaaaat ataatgtcgt attttggaca cataggttca tatagttttt acatagtatc
      601 acatagtttt ttatctaaag tttacataga aatacctgtg gtgtttacac ataaaagatt
      661 agctaatctt tcaaaaatac cgacaggtat ttttactatg tgccctgatt gtttgatatt
      721 tacaaaaaac atgaatgtgt taattttctg tttttattta aattaaaagt ctttactatg
      781 tgttgctatg tgaaaacaat atgaacctat gtgtcaattg tttttgagac ttaaaatgct
      841 acattatatt attctcacta cttagtctgt tttatacgga ttaataaaga gtaaccgggc
      901 agcattcagg atcggtcgga gtatgtagaa cttcgttgcc gcagtaagta agccgggaga
      961 atctgtttcc ggacttcctt tgcaatgttc aatgcaaaac acttataaat aacgttttgg
     1021 agagctaaag tgttccttaa atccatcaag atacaggaat aaaaagcccc cgaagcaaaa
     1081 ggcaacgggg gctggcagtt attctttttt tcttttattc taccttccat gttttcaata
     1141 tatcctgttc cgaaatgggt gaaccatcgg gtttggtgta gccttcgaac agcaagcggt
     1201 attgtttggc cagttgtgcg ttgtacatcc attttccggg gatataataa aggttgtttt
     1261 ccctgcaata ttgttccaga tagttggttt tgttgtcttt ttcgggcatg ttgtggcaaa
     1321 acaccatttt gcaaccgccg aggagcgaag agaggccggg tgcgttcaga aaatcaggat
     1381 cggacgaaac aggtgtggcg tctaccacca aatcataagg tccttcgaaa tgagcaacat
     1441 gttctattcc caattgcttt ttcttttcct gtacccgccc gggacttctg cccaccattg
     1501 ttacacggat gcccagttcc agcaacacat gaaaagcaac acccgatacg ccgccgttgc
     1561 cataaataac ggctgtttta atatcgagcc ctgaagtttc aatacctttc attaaagccg
     1621 tttttaatcc aatggcatcg gaattatatc cgtacagttt gccattgttg tttaccacgg
     1681 tgtttaccgc cagggttttc aatgccaatg gctccacctc gtccagaaaa ggaataatgt
     1741 ccgatttcag tccgcctctt cctgtaactg ctgcaccgcg tgcaatgggc gagcggagca
     1801 gggctgcata tccttcggga gtaacctcat cggcaatggt gaaatatacc aggtttaatc
     1861 ccagtttccg tatggcatcg ttgtgtttca caatggaaga tgcactgccg gatgtggaga
     1921 aaataaactt cgtctgaacg ttcaggttga cgctataatc gggttgttgg gttttcataa
     1981 taattgcctg ttgataattt ggatgattca atgacctgtt ttcaaccaca tagaattcat
     2041 agtaacatag ttccacatag ttttttataa aataaatttt agtacatgac aaaaaaagaa
     2101 taggaacgcg gataaggcgg attaagctga tttacacgga tatgatataa cgtaaataat
     2161 ataaacggat tttcaagagg attattccga taaatcggaa cggatcaaat tcaatttatt
     2221 gaatttaaaa tcaggaaaat atcc
//
LOCUS       DATDNM010000039         6781 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1072263, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000039 DATDNM010000000
VERSION     DATDNM010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6781
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1072263"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..944)
                     /gene="hemE"
                     /locus_tag="VI413_00670"
     CDS             complement(<1..944)
                     /gene="hemE"
                     /locus_tag="VI413_00670"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEY6913159.1"
                     /translation="MSNSIFTDTLKGVKRERPPVWFMRQAGRVLPSYLKLREQYSFRE
                     LMFNPELAAEVTLLPVNELGVDAAILFSDILVIPEALGMNLKFTDKGPIFDAPLQDAV
                     RQLASLQPDSSKLEHVYKALDIIKKQKPDDVALIGFCGAPFTTFCYMVEGSSANHNFS
                     KAIKLFYNNPEISGKILELITELSIEYATTQAEHGIDVFQLFETHAGLIPSEMYNERI
                     MPHVNRITNAVRSKNIPVIFFPKGLGIGISHINYDVADFVGIDWQYSLSEARALVDSK
                     VGVQGNLDPRILAIDNKEILEKELEKYKAFGQKNLNWI"
     gene            complement(1020..2309)
                     /gene="hemL"
                     /locus_tag="VI413_00675"
     CDS             complement(1020..2309)
                     /gene="hemL"
                     /locus_tag="VI413_00675"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEY6913160.1"
                     /translation="MNIENSKTAFKQACEVIPGGVNSPVRAFKSVGGQPVLIAKGKGS
                     KITDIDGNEYIDFISSWGPLILGHAYQPIVEAIQRTAELGTSYGAPTLLETEMAELIV
                     SMMPSIEMVRMVSSGTEATMSAIRLARGVTGRNKILKFAGCYHGHGDSFLIKAGSGAL
                     TLGLPDSPGVPESIAKDTLTANYNDLASVEKIFTEYGNQIAAIIVEPVAANMGAVLPQ
                     KGFLEGLRKITEENGALLIFDEVITGFRLSPGGAQQYYGVMPDITTLGKIIGGGLPVG
                     AYGGKKSVMQQLAPVGPIYQAGTLSGNPLAMAAGLEMLKTLNNNPSIYTELERKAEKL
                     EKGLKENLEKTGTKAVINRVGSLMTMFFTDLEKVESFEEVMKSDKDKYAKYFSLALEA
                     GIYLAPSQFEAAFISNAHSDEDIEKTIEASYQAMLKL"
     gene            complement(2311..3291)
                     /gene="hemB"
                     /locus_tag="VI413_00680"
     CDS             complement(2311..3291)
                     /gene="hemB"
                     /locus_tag="VI413_00680"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018360338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEY6913161.1"
                     /translation="MSFPVTRLRRLRKNPILRNMISETSISADDLIMPLFVCPGTNVN
                     NPISSMPGNSQLSIDLLLEECAGLLAVGVKSVLLFGIPESKDETGEVACGHNSIVQKA
                     IRAIKERFGNEILVVADVCNCEYTTHGHCGTIVDGDVDNDLTLITLANQSLSLAQAGA
                     DVIAPSDMMDGRVKKIREMLDENGFSQTPIMAYSAKYASGFYGPFREAAESAPKFGDR
                     RSYQMNPANSDEAMREIALDIEEGADIVMVKPAMSYLDIIRRTKDTFNIPIAAYSVSG
                     EFSMIKAAGANGWIDEERIMMEVVLSIKRAGADIIITYFAKEIAEVLNRK"
     gene            complement(3364..4131)
                     /locus_tag="VI413_00685"
     CDS             complement(3364..4131)
                     /locus_tag="VI413_00685"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEY6913162.1"
                     /translation="MNTLTNKIIISTRPLIEDDQIKSHLTAKGAQVLDFPMIRTECVE
                     FTENIKTVFAGLNDCEWIVFTSKNGVICFYELLNKAGVDAGILSFKKIAVMGKATGDE
                     VVKRGGNAHLISSGRTAEDLLVEIKREIQLTDKVLLALGELAEDKLETGLNCICQTER
                     INVYKTIDLEYTTNEIIDRIKEDKYDIILFTSPSGFRNFYKIMLANKITPPFRMACIG
                     TTTEKEMQKNNCQPLVVSPKSDVESFANAIEKYLIQL"
     gene            complement(4167..5087)
                     /gene="hemC"
                     /locus_tag="VI413_00690"
     CDS             complement(4167..5087)
                     /gene="hemC"
                     /locus_tag="VI413_00690"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: protein motif:HMM:TIGR00212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEY6913163.1"
                     /translation="MNKKYIVATRPSLLAYTQTMQTVELLKAKNPDCEFEVVKISTHG
                     DAVTDKPLTAFGGTGVFVKELENAILEGKAHFAVHSLKDVPSLQPADLVLAAFPTRQD
                     PRDVLLIKGGLSISDLKDNCVIGTGSPRRIVQIAEMKPTATFTDLRGNIDTRLKKLEE
                     GQYDAIVLAAAGLKRLGKKIAESAFLPVNSSTPAIGQGAIAIECRAGDDDTIALLRTI
                     NDPATETAILAERAYMKTIGGGCKFPLGAYATVENGTIELSVMLGNHHTQQIIRRSEK
                     APVAEAEALGKKLAEDIIAEAEKLGIEILK"
     gene            complement(5080..6354)
                     /gene="hemA"
                     /locus_tag="VI413_00695"
     CDS             complement(5080..6354)
                     /gene="hemA"
                     /locus_tag="VI413_00695"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: protein motif:HMM:TIGR01035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEY6913164.1"
                     /translation="MHLLVIGINFKTADVSVREKLHFSNELNSRALDQLNEYKTINGS
                     VILSTCNRVEIYTAVNNIEEASNDVLSFISNFHSIPVESLLPIIYKKNCQDAVVHLFK
                     VASSLDSMVLGEYQIQGQVRDAYFAAKENHSTNALLNKVFQTAIQIGKKVRSETKIGD
                     GSVSVATLAVDMVKQIFEDRKDLNILLIGAGKISNLTATYLQQKFSNCNITVTNRSDA
                     SELAKRVDGKLIEYSQRFAGILENDVIVASTSAPNFIVCRHEINMMEEALQGKTRIFI
                     DLSIPRNIDPEINKIDNCFVYSIDDINKMIDSNLDKRTLEVSKAEEIIREISEDYFEW
                     YSKHFIMPTMAEIKKGLVVLKQSTLDLHEPFTNKLDDTEKEELDKVLDAYSDRILKVI
                     MSNLRKASTREEMISITKTLKDSFTIDVPEHE"
     gene            6571..>6781
                     /locus_tag="VI413_00700"
     CDS             6571..>6781
                     /locus_tag="VI413_00700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913165.1"
                     /translation="MYTLFIFMLIKLLFTPILPSKLTQVSHGLLKISSNYVFATSYEQ
                     NSLYISLIINHIHPIKNRYYELARTT"
BASE COUNT         1846 a         1550 c         1281 g         2104 t
ORIGIN      
        1 aaaatccaat tcagattttt ttgaccaaaa gctttatatt tttccagttc tttttcaaga
       61 atttctttat tgtcaattgc cagaatgcgc ggatccagat ttccctgaac acccactttg
      121 ctgtcgacca gcgcacgggc ttccgacaat gaatattgcc agtcgatgcc cacgaaatca
      181 gccacatcat aattaatgtg agaaattcca atgccaagtc ctttcgggaa aaatatcacc
      241 ggtatgtttt tgcttcttac agcattggtt atccggttta cgtgcggcat aatccgttcg
      301 ttgtacattt ccgacggaat aagccctgca tgagtttcaa acaattgaaa cacatcaatg
      361 ccatgttcag cctgtgtcgt tgcatattct atggacaatt cggtaataag ttccagaatt
      421 ttgccggaaa tctccggatt attgtaaaac aacttgattg ctttcgaaaa attatggttc
      481 gcgctgctgc cttctaccat atagcaaaaa gtagtgaacg gtgctccaca aaatccaatc
      541 aaagccacat cgtccggctt ttgttttttt atgatatcca gtgctttata cacatgttcc
      601 aatttagaac tgtccggttg caaagaagcc aactgcctga ctgcatcctg aagcggcgca
      661 tcgaaaatcg gccctttatc tgtaaatttc aggttcattc ccaatgcttc aggaatgacc
      721 aaaatatccg aaaacaagat cgcagcgtcg acacctaatt catttacagg caacaaagtg
      781 acttcagcag cgagttccgg gttaaacatt aattcgcgaa aactgtattg ttcacgaagt
      841 ttaaggtaag atggcaatac ccgtccggcc tgacgcataa accacaccgg cggacgttca
      901 cgttttacac ctttgagagt atctgtaaat atagagtttg acatattttt ccagggtttc
      961 gcgaatttta ttcgcggttg ttagtttaaa taatcgcgaa taaaattcgc gaaacctgat
     1021 tataatttta acatagcctg atagctggct tcaattgttt tttcaatatc ttcgtcgcta
     1081 tgggcgtttg agataaaggc ggcttcaaat tgcgatggag ccagataaat tccggcttcc
     1141 aatgccaaac tgaagtattt tgcatattta tctttgtcgg atttcattac ttcttcaaac
     1201 gattcaacct tttcaagatc agtgaaaaac atcgtcatta acgaaccaac ccggttgata
     1261 acagcttttg ttcctgtttt ttcaagattt tcttttaatc ctttttccag cttttcagct
     1321 ttgcgttcca attcggtgta aattgaagga ttgttattca atgttttgag catttccagt
     1381 ccggcagcca tggccaacgg atttcccgat aatgttccgg cctgataaat tggtcctacc
     1441 ggagcaagtt gttgcataac agatttttta ccaccataag cgccaacagg aagtccaccg
     1501 ccaatgattt ttccgagtgt cgtaatatcc ggcattacac cgtaatactg ttgcgcgcca
     1561 cccggcgaaa gccggaaacc ggttatcact tcgtcgaaaa tcaataaagc accattctct
     1621 tcagtaatct tgcggagccc ttccaaaaat cctttttgag gaagaacagc gcccatgttc
     1681 gcagccacgg gttcaacaat aatagcagca atttggttcc cgtattcagt aaatatcttt
     1741 tctaccgaag ccaagtcgtt gtaattagct gtaagtgtat ctttagctat actttccgga
     1801 acgcccggac tatccggcaa accaagagtc aatgcacccg aaccggcttt aatcagaaaa
     1861 ctatcgccat gaccgtgata gcaacctgca aatttcagaa ttttatttct tccggtaaca
     1921 ccacgcgcca atcggatcgc actcatcgtg gcttccgttc ctgaacttac cattcgaacc
     1981 atttcgatag aaggcatcat gctaacgatc agttcagcca tttctgtttc gagcaaagta
     2041 ggtgcaccgt agctggttcc cagttctgcc gtccgctgaa tagcctcaac aataggttga
     2101 taagcgtgac ctaaaatcag tggaccccac gaactaataa agtcaatata ttcgtttcca
     2161 tcaatgtctg taatttttga acctttacct ttcgcgatta aaacgggctg tccgcctaca
     2221 cttttgaaag ccctcaccgg ggaatttacg ccaccgggaa ttacttcgca tgcttgttta
     2281 aatgctgttt tgctattttc gatattcatt ttattttctg tttagaacct cagcaatttc
     2341 ttttgcaaaa taagtaataa taatgtcggc accggcacgt ttaatggaga gtaccacttc
     2401 catcatgatg cgttcttcat caatccaacc attggcaccg gcagctttta tcatcgaaaa
     2461 ttcaccactc acgctatagg cggcaattgg aatattgaac gtatctttcg tccggcgaat
     2521 aatgtccagg taactcatag ccggtttcac cattacaatg tcggcacctt cttcaatgtc
     2581 gagtgcaatt tcgcgcatgg cttcatccga gttggccgga ttcatttgat agctcctgcg
     2641 gtcgccaaat tttggagccg actcggccgc ttcgcgaaat ggtccgtaaa agcctgaagc
     2701 atattttgca gaataagcca taatcggcgt ttggctgaat ccgttttcgt ccagcatttc
     2761 gcggattttc tttacgcgtc cgtccatcat gtcgctcggt gcaattacgt cagctccggc
     2821 ctgagccagt gacagcgact ggttggcaag cgttataagc gtcaggtcgt tatccacgtc
     2881 gccatccacg atggttccgc agtgtccatg cgtagtatat tcacagttgc aaacatcggc
     2941 cacaaccaaa atttcgtttc caaagcgttc tttgatagca cgaatggctt tctgcacaat
     3001 actgttgtga ccgcaagcca cttcgcctgt ttcgtccttg ctttcgggaa ttccaaaaag
     3061 caaaactgac ttaacgccaa cggccaataa tccggcacat tcttcgagta gcaagtcaat
     3121 ggataactgc gaattacccg gcatcgaaga aatcggatta ttcacgttcg taccaggaca
     3181 aacgaataac ggcatgatta aatcgtcggc actgattgaa gtttctgaaa tcatgtttct
     3241 gagaattgga ttttttctca ggcggcggag tcttgttact ggaaatgaca tatcttttag
     3301 tttttttgag gaacgcaaat cacgcaatcc cgatagctat cgtggacgca gatttccgca
     3361 catttatagt tgaatcaagt atttttctat tgcattggca aagctttcaa catccgattt
     3421 tggagaaaca accaatggtt ggcaattgtt tttctgcatt tctttttcag tggtagtgcc
     3481 aatacaggcc attctgaatg gtggtgtaat cttatttgca agcattattt tataaaagtt
     3541 ccgaaatccg gacggactgg taaacagtat aatatcgtat ttatcttcct ttattctgtc
     3601 gattatttcg ttggttgtat attctaagtc aatggtttta tacacattga tacgttcggt
     3661 ctggcagata cagttcagtc ctgtttccag tttatcttcg gccaattcgc ccaaagccag
     3721 caagactttg tcagtcagtt ggatttcccg tttgatttct accaacaagt cttcggccgt
     3781 tcgtcctgac gaaatcaaat gagcatttcc accgcgcttt accacttcat cgccggtggc
     3841 tttacccata acggcaattt tcttgaaaga tagaataccc gcatctacgc cggctttgtt
     3901 caacaattcg tagaaacaaa taacgccatt cttactggta aaaacaatcc attcacagtc
     3961 gttcaagccg gcaaaaacag tctttatatt ttcggtaaac tcaacacatt ccgttcgaat
     4021 cattggaaaa tccagcacct gcgctccttt ggctgtcaaa tgacttttta tctggtcatc
     4081 ttcaatcaaa gggcgggtgg aaataatgat tttattggtt aatgtattca tgttttgtaa
     4141 taacggaatc ggagttccgc tctcccctac ttcaatatct ctattccaag cttctctgct
     4201 tcagcaatta tatcttcagc cagtttctta cctagtgctt cggcttcggc aaccggcgct
     4261 ttttccgacc ggcgaataat ttgctgcgta tggtgattgc ccagcataac tgaaagttct
     4321 atagttccgt tttcaacggt ggcgtaagct cccaagggga atttgcaacc gccaccaata
     4381 gttttcatat aagccctttc ggcaagaata gcagtttcgg ttgccggatc atttatcgta
     4441 cgaagcaatg caattgtatc gtcgtcaccg gctctacatt caatggcaat agctccctga
     4501 ccaatggcag gcgtgctgct gttaacaggc agaaaagcac tttccgcaat tttttttccc
     4561 aatcttttta atccggcagc tgccaaaacg attgcgtcgt attgtccttc ttccagtttt
     4621 ttcaggcgtg tatcaatgtt tccacgcaaa tcggtgaaag tggcagttgg tttcatctcg
     4681 gctatctgca caatgcggcg cggacttccg gttccgataa cgcaattatc tttcaaatcg
     4741 ctaatgctta atccgccttt tatcaacaac acatcacgag gatcttgtct cgttggaaat
     4801 gctgcaagca ctaaatctgc cggttgaagg cttggtacat ctttcaggct gtgaacagca
     4861 aaatgcgctt tcccttccag aatagcattt tcaagctctt tcacaaaaac accggttccc
     4921 ccaaatgcag tcaggggttt gtccgtaaca gcatcaccgt gggtggatat tttcacgact
     4981 tcgaactcac aatccggatt ttttgctttt agcagttcca ccgtttgcat ggtttgcgtg
     5041 taggccaaca aactgggacg ggtggcaact atgtatttct tattcatgtt ccggaacgtc
     5101 aatcgtaaat gaatctttta atgttttggt gattgaaatc atctcttccc gggtacttgc
     5161 tttcctcagg ttggacataa tcaccttgag aatcctgtcg gagtaagcat ccaatacttt
     5221 gtccagttct tctttctctg tgtcgtccag cttatttgta aagggttcgt gcaagtccag
     5281 cgtgctttgt ttcagcacca ccagcccctt tttgatttct gccattgttg gcataataaa
     5341 atgctttgag taccattcga agtaatcttc cgaaatttcg cggattatct cttctgcttt
     5401 ggacacttca agggttcttt tatcgagatt agagtcaatc attttgttaa tgtcgtcgat
     5461 ggagtatacg aagcagttat caattttatt aatttccgga tcgatattcc ggggaataga
     5521 caaatcgatg aaaatacggg ttttgccttg cagagcctct tccatcatgt ttatttcgtg
     5581 gcggcaaaca ataaaattgg gtgcactggt agaagctacg attacatcgt tttccagaat
     5641 gccggcaaac cgctgggagt attcaatcaa ctttccatca acccgtttag ccaactcgct
     5701 ggcatccgag cgattggtaa cagtgatatt gcaatttgaa aatttctgtt ggaggtaagt
     5761 ggccgtaagg ttagaaattt taccggcacc tatcagcagg atattaagat ctttccggtc
     5821 ttcgaaaatt tgctttacca tatccactgc caaagttgct acggatacag aaccgtcgcc
     5881 gattttagtt tcggaacgta cttttttacc aatctgaatg gccgtttgaa aaactttatt
     5941 caacagcgca ttagtggaat ggttctcttt ggctgcaaag tatgcgtcgc gcacctgccc
     6001 ctgaatctga tattcgccta acaccatgga atccagactg gaagccactt taaataaatg
     6061 cactaccgca tcctgacaat tttttttata tataattggc aaaagtgatt caaccggaat
     6121 agagtgaaaa ttgcttataa aacttagaac atcattactt gcttcctcta tattatttac
     6181 tgcggtgtaa atttccaccc tattgcaagt ggaaagaata acgctaccat tgattgtttt
     6241 atattcgttt agctgatcta atgccctgga atttaattca tttgaaaaat gaagtttttc
     6301 tcgtacactg acatctgccg tcttaaaatt aattcctata actaataaat gcatatcaaa
     6361 taaataaatt tgcaccaagc aaaataagta tgtaaagtaa actcattcta attaataatc
     6421 aaactaattt caagataatt aaggaaaata cacaaatagg tcaataatca tcttcaaatt
     6481 aataaattat ctcgcacact gccatcaata acacatttca gggccttttg tttagttaaa
     6541 ctaattatcg gaaaacaatt aactcaacca atgtacacac ttttcatatt tatgttgata
     6601 aaattgttat ttacaccaat actgccttcc aaactgactc aagtttcgca cggattactg
     6661 aaaatcagtt ccaactatgt atttgcaact tcatacgaac aaaacagcct ttatatcagt
     6721 ttgataataa accatattca ccccataaaa aatcgatatt atgaacttgc tcgaacaact
     6781 t
//
LOCUS       DATDNM010000040         2613 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_218168, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000040 DATDNM010000000
VERSION     DATDNM010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218168"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..493
                     /locus_tag="VI413_00705"
     CDS             <1..493
                     /locus_tag="VI413_00705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6913166.1"
                     /translation="PIHLYNRSDACGAGETWGKYLGGKKQEELLGTGVFGDPGVASAV
                     QKDPVGFGYNNIAYAYDLKTKRPNPGILVLPIDVNNNGKVDAAENFYGTSTQLISAIA
                     QGKYPSPPARDLYLVSNGKPTNPVVIAFLKFILTEGQKYNVPNGYINLPADKLGKGIA
                     KLK"
     gene            756..1646
                     /gene="pstC"
                     /locus_tag="VI413_00710"
     CDS             756..1646
                     /gene="pstC"
                     /locus_tag="VI413_00710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006283818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEY6913167.1"
                     /translation="MRNKILKNRIAGGFMFTITVASILLVVLIGLGLYVKSLPIFEHN
                     SFWQLITSSEWRPGNGQFGFLPFIAGTVAITLIAIVLALPIALLSALFLTEFSKSYLK
                     KWVFTALDILAGIPSVVYGVWGTLFIVPWISEKLAPHFVEYSTGYTVLAGGIVLGVMI
                     LPLLISLFVEIFSAVPREFRDASLSLGATKWQTSKYVILRKTFPGILAAVILAVSRAL
                     GETIAVLMVCGNLPMVPHSLFDSCYPLPALIANNYGEMLSVPLYESALMLAAFLLFIV
                     VFIFNASSRAVIYRIERKFK"
     gene            1643..2488
                     /gene="pstA"
                     /locus_tag="VI413_00715"
     CDS             1643..2488
                     /gene="pstA"
                     /locus_tag="VI413_00715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEY6913168.1"
                     /translation="MRLKFIEEKIAKGLMIVASLAVFAFVVNIIYTIFRRGFPALNWE
                     MISQIPAGGYYNGGGGGILNAIIGSLYIVLGSTILGLLISIPVVFYLNVYLKKDSKLA
                     YVARLAFDVLFGIPSIVYGAFAFTIMIYLGMHTSLAGGILVITLLIIPIFIRSMDEVA
                     QQLPKDLLDSTYALGATKLETITVILRQIAPGIATATLLSVGRAIGDAAGVMFTAGFT
                     DSIPTSLSQPAATLPLSVFFQLSSPNADVQDRAYSAALILIFIVLVISILGRLITNYF
                     SKHKI"
BASE COUNT          682 a          510 c          626 g          795 t
ORIGIN      
        1 tcctattcac ctgtataacc gttccgacgc ctgcggtgcc ggcgaaacct ggggaaaata
       61 cttaggtgga aaaaaacagg aagagttatt gggtacaggc gtttttggag acccgggagt
      121 agcttcggcc gttcaaaaag accctgtggg attcggatac aacaacattg cttatgcgta
      181 tgacttaaaa acgaaacggc ctaatccggg tattctggta ttgcctatcg acgtgaataa
      241 taacggaaaa gttgatgctg ccgaaaactt ctacggaacg tctacccagt tgatttcggc
      301 catagcgcag ggcaaatatc cttcgccgcc ggctcgcgat ttgtaccttg tttcaaacgg
      361 aaaacccact aatccggtgg tgatagcctt cctgaaattt atccttaccg aaggacagaa
      421 atacaatgta ccaaacggtt atatcaattt gccggcagac aaactcggta aagggatagc
      481 caagttgaag taaaatgatg tggtttagga gcaaaaccat ctggtatgga gttcaaacca
      541 tgtgatatgg agcttaaagc atgtggtatg gagttcaaac cacttgcttt ggaagcaaaa
      601 cgatgtggta tggaagcata agcaagtgat atgggaataa aagcaggtgg tatggatact
      661 aatacagatg atttactgac aaaatgatag ttggagtgat tggaattaca cccgcgatat
      721 agaaaattgt agtagttact tgtaagtttg aataaatgcg aaacaaaata ctaaaaaata
      781 gaattgccgg agggtttatg tttaccataa cagtggcatc catcctgttg gttgtgctca
      841 ttgggttggg actttatgtg aagtcgctgc caatttttga acataacagc ttttggcaat
      901 tgattacttc atcagaatgg cgcccgggga acggtcagtt tggctttctg ccttttattg
      961 ccggaacagt tgccataacg cttattgcca ttgtgcttgc actgccaatc gcgttgttgt
     1021 cggccttgtt tctgaccgag ttttcaaaat catatttgaa gaaatgggtg tttacagcac
     1081 ttgatatttt agcgggaatc ccctctgttg tgtatggagt ttggggaaca ttattcattg
     1141 tgccatggat ttccgagaaa ctggccccgc actttgtgga gtattctaca ggttatacgg
     1201 tgttggccgg aggaattgtg ttgggagtaa tgattttgcc tttgttgatt agtttgtttg
     1261 tagaaatttt ttcggctgtg ccgcgggaat ttcgggatgc ttccctttcg ttaggtgcta
     1321 ccaaatggca aaccagcaag tatgtgattt tgcgcaaaac atttccggga attctggcag
     1381 cggttattct ggccgtgtca agggctctgg gcgaaacaat tgccgtattg atggtctgcg
     1441 gaaacttacc gatggtaccg cactcgttgt tcgattcatg ttacccgcta ccggctttga
     1501 ttgccaataa ttacggcgaa atgctttcgg tcccgttgta cgaatcggcg ttaatgttag
     1561 ctgcattttt gctctttatc gtggtgttta ttttcaatgc ttcatccaga gcagtaattt
     1621 atcgaataga aaggaagttt aaatgagact caaatttata gaagaaaaga tagcaaaagg
     1681 gctgatgata gtggcttcat tggcagtgtt tgcctttgtg gtgaatatta tttacaccat
     1741 atttcgtcgt ggctttccgg cattgaattg ggaaatgatt agccagatac cggccggtgg
     1801 atattacaac ggcggtggtg gtggaattct gaatgccatt atcggttcgt tgtacattgt
     1861 gcttggctcc accattttgg gtttgcttat cagcattccg gtggtatttt acctcaatgt
     1921 gtatctgaaa aaagactcca aactggctta cgttgcccgg ctggcattcg atgtgctttt
     1981 cggtattccg tctattgttt acggtgcgtt tgcatttacc attatgattt acctgggcat
     2041 gcatacttcg ctggcgggtg gtattctggt tattacattg ctgataatcc ccatttttat
     2101 tcgttccatg gatgaagtgg cacagcaatt gccaaaggat ttgttggatt cgacttatgc
     2161 attgggcgca acaaaactgg aaacaataac ggttatactt cgacaaattg ctccgggtat
     2221 tgccactgcc actttactat cggtaggccg cgccattggc gatgcagccg gggttatgtt
     2281 tacagccggt tttaccgaca gcattccaac ttcgctcagc caacctgcag ccacattgcc
     2341 gctatccgta tttttccagc tgagcagccc caacgccgat gtgcaggaca gggcatattc
     2401 tgcagcattg atacttattt ttattgtgct tgtaataagc attctcgggc gtttaattac
     2461 taactacttt tcaaaacaca aaatataatg aagtcatatc tttatcaaaa tccctcccga
     2521 gccacctggg ctgaagatta ttcctttttg aataatgata taaacaagga agaaggtctc
     2581 ggacttaaaa aatcttattt gaaagtaagt gat
//
LOCUS       DATDNM010000041         2016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_4517, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000041 DATDNM010000000
VERSION     DATDNM010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4517"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            645..1331
                     /locus_tag="VI413_00720"
     CDS             645..1331
                     /locus_tag="VI413_00720"
                     /inference="COORDINATES: protein motif:HMM:NF045041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913169.1"
                     /translation="MRKFILLAAVIFSGIISPAQEIFFPTKEGTVLVYKSFDKKGKEI
                     NTLRYTITQLKVMGHDMDITYQVESIDPKGKQGYTDEVTIHKKGDKLYFDMGSYINKA
                     AFQQNGKISADVLVTGNNMEMPSNPRAGDVLPDANVEMSLDMGFMKMKMSADVTNRKV
                     EAIEDITVKAGTFKSYKFTSDVTSSALGIKMKNNSIEWYAKGIGMLKTQTYDKNGNLL
                     SYMELVELKE"
     gene            complement(1541..1738)
                     /locus_tag="VI413_00725"
     CDS             complement(1541..1738)
                     /locus_tag="VI413_00725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913170.1"
                     /translation="MAIRKLLDFQSTNNIKFVFTHHSKAYTAIEIAHSALIHGHESAK
                     TVILKVGGKMAMAVLPAMPVF"
BASE COUNT          701 a          355 c          356 g          604 t
ORIGIN      
        1 gtcaactgag tcttgacatt atctttgcgc tttacctcat ggtgttcgag cggattgata
       61 tagagaatgg aacattcaca acaaaagaac taaacccgac tcctgaagaa ataaaagcac
      121 gggtatggaa agtgattgaa aattttaaga cagtataatt aattcccaca aatcaactaa
      181 aacaaatctc aataccaata aaaacagatc tgccagccag gtaacttatc tggagctaaa
      241 aatcaatgca atactaaaaa aactccgatt tccgacacag tgttggaaaa tcggagtttt
      301 cttttaccag gtttgataga aacacctgaa tactctcgct cctgttcctt cctgtaaaac
      361 tccacaatat tagaattcag gtccgtagtg tatttgatgg ctttcgggcg tttctctcag
      421 gtttaccagt tcagaacttc tttagtgagc aaaaaacaat caaccttttt agggttaatt
      481 attatgttct gacacattca gccagaacat tctattttac tattttgttt tatatactct
      541 gatttcatgc aacttagaca ttccaaatgt accatttcag cataagtttt ttttttcagg
      601 agttcattca atcatatttt aaccaattac aaatctaaaa aaaaatgaga aaatttattc
      661 ttttagcagc agtcattttc agtggaataa tttcacctgc acaggaaatc tttttcccta
      721 ccaaagaggg aactgttctt gtttacaaat cgtttgataa gaaaggcaaa gagatcaaca
      781 cgctgaggta caccattacg cagttaaagg taatggggca cgacatggat attacatatc
      841 aggttgagtc tattgaccca aaaggcaaac agggatacac agatgaagtt accattcata
      901 aaaaaggaga taagctttat ttcgacatgg gcagctatat caataaagct gccttccaac
      961 agaatggtaa aatttcggcc gatgtgctgg ttacgggaaa taacatggaa atgccttcaa
     1021 atcccagggc gggcgatgta ctcccggatg caaacgttga aatgtctttg gatatgggat
     1081 tcatgaaaat gaagatgtca gctgacgtga cgaatagaaa agtggaggca atagaagata
     1141 ttaccgttaa ggccggcact ttcaaaagct acaaatttac tagcgatgtt acctccagtg
     1201 ctttgggaat aaaaatgaag aacaatagca tagaatggta tgctaaagga atagggatgt
     1261 taaagacaca aacttacgat aaaaatggta accttctatc gtatatggaa ttggtagagt
     1321 tgaaagagta aacaaatgat cttatccaca tgtaattcgg gttgacaaat gaaatgacag
     1381 gatggcaaaa atcatcctgt catttctata aaatcataaa atagagtcga ttccgcgaag
     1441 atcaggatta tatacttgct ccaatgcttg tgtcagaact taaaaacctt aagatacacc
     1501 atttttttga aatcatggtg cgccaaacgg accaactcaa tcagaaaacc ggcattgcag
     1561 gcaaaacagc catagccatt tttccaccaa cttttaatat aacagttttt gctgattcat
     1621 gtccgtgaat tagtgcagag tgtgcaattt caattgcagt ataagctttt gagtgatgag
     1681 taaaaacaaa tttaatatta ttggtgctct gaaaatcgag taatttgcgg attgccataa
     1741 tagtttggtt ttaaagtttg gtaacttgtt catttctcct ttttcaaaag acactttgtt
     1801 cacacaaccc tattaaactt atgtaacctg ctaagatgat tgctcagttt gaaatacaaa
     1861 caagacaatt ttcattttat ctaaatattt tcaaccaaat tgcttggacg ttaaaaatat
     1921 tattcctact tttggatcgt taactttgta aacacagaaa gatctttcat tgattaaaat
     1981 caatatttac agaagaagtc tttcgactaa aaaaaa
//
LOCUS       DATDNM010000042         3603 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1713257, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000042 DATDNM010000000
VERSION     DATDNM010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1713257"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..301)
                     /locus_tag="VI413_00730"
     CDS             complement(<1..301)
                     /locus_tag="VI413_00730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004348550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY6913171.1"
                     /translation="MNKVLFFLSIFSCFLNTATAQTLPQVDPEQVGLDTHKLQQADDF
                     ILQAISNKEIPGAVLAVVRNGKMAYLKAYGNRQVYPTVVPMDVNTVFDMASCTKPM"
     gene            529..1044
                     /locus_tag="VI413_00735"
     CDS             529..1044
                     /locus_tag="VI413_00735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913172.1"
                     /translation="MKKVIFLLFLSVLFVSCKSDKEKQIDKFIQKVELAGLDNFINIE
                     YVTRGEVEKYTYYQSDSVGANWEYDNLTSKFGSYDSVRMKRIAPRPLQYMDTLRSKIK
                     SIGVEVVSQTEWHGSVLKFWLNDAEYVTYVAPGFKFDSSNKVLLENELKSSNKIRDNW
                     YYRKLKVCRNK"
     gene            1099..2301
                     /locus_tag="VI413_00740"
     CDS             1099..2301
                     /locus_tag="VI413_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEY6913173.1"
                     /translation="MKQLHIPAKDINLSISLPASKSISNRALILNALAYSPYDIQNLS
                     DCDDTRVTVKALDSNDTTFDIGAAGTAMRFLTAFLAKTVGEWVITGSERMKNRPIKLL
                     VDALTSLGARIEYVEKEGYPPLRIFGSAMMGGEISLNGGVSSQYISALMMIAPYMQNG
                     LKIKLKGNVISVPYIQMTMRMMKEYGVDVTFENNEIDIKPQIYKPIQYKVESDWSAAS
                     YWYEILSVAGKGQIFLNGLNQNSSQGDSKVAALFEQLGVKSQYQPEGVLLTSTGNYTS
                     KFDNDFVNQPDLAQTFAVTCCLKNIPFHFKGVQSLKIKETDRIAALINELAKLGFVLF
                     EPADGELAWAGERCAPAPNISIATYEDHRMAMAFAPAALVTPLVIEEPQVVSKSYPNF
                     WNDIEKIK"
     gene            2693..3322
                     /locus_tag="VI413_00745"
     CDS             2693..3322
                     /locus_tag="VI413_00745"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6913174.1"
                     /translation="MAIFKINHITKQFSEKFVLNDFSFEIAAGDKVNISGRSGIGKTT
                     LFRLLLGFEKPDNGEIYFEKEPLTDAAMWQVRRSVAYVSQDLNIGRGPVRAFFDESLS
                     LKANHIHKSASGQNIPELLDYFELPDGILNKNIEELSGGEKQRIAIINALLLKRRVFF
                     LDEVTSALDKSLKKKVLDYFLLNPDFTVLYISHDNYLPLGVELKTLKLD"
     gene            3325..>3603
                     /locus_tag="VI413_00750"
     CDS             3325..>3603
                     /locus_tag="VI413_00750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6913175.1"
                     /translation="MDGAQDLSIFSMIMCGLLLLIPLATVGYFKLGITRNLLVSTTRM
                     VVQLVLIGFFLEYIFRYNNWAVNLLWFLVMITAAVFSVIKNSGLNLNRF"
BASE COUNT         1030 a          636 c          831 g         1106 t
ORIGIN      
        1 ccataggttt ggtgcaggat gccatatcga aaaccgtgtt tacatccatg ggaacaacgg
       61 ttggataaac ctgcctgttg ccataagctt tgaggtaagc cattttccca ttgcgaacaa
      121 cagccagcac ggctccggga atttctttgt tgctgatggc ttgcaggatg aaatcatcag
      181 cttgttgtag tttatgtgtg tcgagtccaa cctgttcagg atcaacctga ggcaaggttt
      241 gcgctgtggc ggtgttcagg aaacaactaa aaattgaaag aaaaaaaaga actttattca
      301 tgtgttctaa accgtgttta tttgtcacaa aaatatggtt tttgcgtgta tatataacag
      361 caaaatcgtg gtttattatt tctgactgta gaaaattatg tacttttgta tcagttttca
      421 tgttttttaa attaaagtga gaagtcaggg ttcctgattt ttgtttttat atgaagatat
      481 gattgtgaaa actattgttt gccgtaagtt tataaattgg atttagctat gaaaaaggtg
      541 atttttttgc tgttcctatc tgttttattt gtatcctgca agtcagacaa agaaaaacaa
      601 atcgataaat ttattcaaaa agtagagctt gccggtttgg ataacttcat caatatagaa
      661 tacgttacgc gtggtgaagt tgagaaatac acttattacc aaagtgatag tgtgggtgcg
      721 aattgggaat atgataatct gaccagtaag tttggaagct acgatagtgt gcgtatgaag
      781 cggattgctc caagaccgct ccaatatatg gataccctga ggagtaaaat taagtcgata
      841 ggcgtggagg tggttagcca aaccgaatgg catggaagcg ttctgaaatt ttggcttaat
      901 gatgccgaat atgtgactta tgtggctccc ggttttaaat ttgattcttc aaacaaagtg
      961 ttgttggaaa acgaattgaa atcatcgaat aaaatcaggg acaattggta ctaccggaaa
     1021 ttaaaagtgt gcagaaataa ataataactt ttctctaatt tgattttata gaataatttg
     1081 cgttaaaata tgacctcatt gaaacaactt catattcctg caaaggatat aaatctctcc
     1141 atctcacttc ctgcatcaaa aagtatcagt aaccgtgcgt tgattttgaa tgcattggct
     1201 tacagcccgt atgacattca aaatctttcc gattgcgatg atacgcgcgt aacggtgaaa
     1261 gcgttggact ccaacgatac aacttttgat ataggggcag cgggaacggc catgcgtttt
     1321 ctgactgctt ttctggcaaa aaccgtggga gagtgggtga taaccggaag tgaacggatg
     1381 aaaaaccggc cgataaaatt gttggtggat gcgcttacaa gcctgggagc aaggattgaa
     1441 tatgtggaga aagagggtta tcctccgttg cgtatttttg gaagcgccat gatgggtgga
     1501 gaaataagtc tgaacggtgg tgtgagcagc cagtatattt cggctttgat gatgattgcg
     1561 ccgtacatgc aaaacggatt gaaaataaag ttgaaaggca atgtgatttc tgttccctat
     1621 attcagatga ccatgcgtat gatgaaagaa tacggggtgg atgtgacttt tgaaaacaat
     1681 gaaattgata tcaagccgca aatatacaaa cccattcaat ataaagtgga atctgactgg
     1741 tcagcggctt cgtattggta tgagattctt tccgttgccg ggaagggaca aattttcctg
     1801 aatggcttaa atcaaaacag ttcgcagggc gacagcaaag tggcagctct ttttgaacaa
     1861 ttgggcgtga aatctcaata tcagcctgaa ggcgttttgc tcacttcaac cggaaattat
     1921 acatcaaagt ttgataatga ttttgtgaat caaccggatt tggcccagac ctttgctgta
     1981 acctgctgtt tgaaaaatat cccgttccat ttcaagggcg tgcagagttt gaagattaag
     2041 gaaaccgatc gtatagcggc tttgattaat gaactggcaa aactgggctt tgttcttttt
     2101 gaaccggcag atggagagtt ggcatgggca ggcgaacgtt gcgcacccgc tccaaacatt
     2161 agcattgcaa cttacgaaga ccaccgcatg gccatggcgt ttgctccagc tgcattggtc
     2221 actccgcttg ttattgaaga accgcaggtg gtgagcaaat catatccgaa cttttggaac
     2281 gatattgaga aaataaaatg acctccaacc cctaaagggg agtttataac tacggcaggt
     2341 ttggtttatt ggttaaaaac atggcaggta tctgttttgc taaaatgaga tggatttgat
     2401 acaataaacc gggtatttgc atttatactc attattacgg tgctctgcac cttcaatttc
     2461 ttcatttgtt tcaatttcta caaatatcac gggacgctgt ccctaaaagt tgcagagcaa
     2521 cgtaagattt gtagaaaagt ttcaattatc tataaaggag gtgcagagca ccgaaatgca
     2581 tttttacaac tattggtttt cattgcttag aattcgtact tgtatagaac taatgttgag
     2641 gtatactctt tagcattctg caatctcatt catttttagg ctttaaggtt ttatggcaat
     2701 tttcaaaata aatcatatca ccaaacagtt cagcgaaaaa ttcgttttaa atgatttttc
     2761 gttcgaaatt gcagcaggcg ataaggtgaa tatctccggt cggtcgggca ttggtaagac
     2821 cactttgttc cggttgttgt tggggtttga aaaaccggac aatggggaga tatattttga
     2881 aaaggagcca cttaccgatg ctgctatgtg gcaagtgcgc cgcagcgtgg cttatgtaag
     2941 ccaggatttg aatatcggcc gtggcccggt gcgggctttt tttgatgaat ctttgtcgtt
     3001 gaaagctaat catatacaca agtcggcttc tggacaaaac atcccagaac ttttagatta
     3061 ttttgaattg cccgatggca ttctcaataa aaatatagag gagctgtccg gaggcgagaa
     3121 acaacgcata gccattatca atgcactgct gctgaagcgt cgtgtgtttt ttctggacga
     3181 ggtgacttcg gccctggata aatccctcaa gaaaaaagtt ctcgactatt ttctcttaaa
     3241 cccggatttt acagtgttgt atatctcgca cgacaactac cttccgttgg gtgtagaact
     3301 aaaaaccctg aaacttgact gattatggat ggagctcagg acttgtcaat tttttcgatg
     3361 atcatgtgcg gcttgttgct gctcattcca ttggctacgg ttgggtattt taaactgggg
     3421 ataacccgga acctgctcgt ttccactact cgaatggtgg ttcagctggt gcttatcggt
     3481 ttttttctgg agtatatttt caggtacaac aactgggcag tcaatttgct gtggtttctg
     3541 gtaatgatta ctgctgcggt tttttctgtt atcaaaaatt cgggcctgaa cctcaacagg
     3601 ttt
//
LOCUS       DATDNM010000043         3435 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1499733, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000043 DATDNM010000000
VERSION     DATDNM010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3435
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1499733"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            285..1358
                     /locus_tag="VI413_00755"
     CDS             285..1358
                     /locus_tag="VI413_00755"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY6913176.1"
                     /translation="MKEINTKIRIKDIATLAGVSEGTVDRVLHQRGDVSEKSRAAVTK
                     VLEEMNYTPNLFARSLASKKQYRFVCLFPQYEQGEYWEIVDKGFSLAAKDFIHHNVHI
                     DKRCFNQFDANSFITVSNEILNNEPDAVLISPIFREETIKFTSELAARGIPFSFIDST
                     IDDVDFLTYYGQNSFKSGYIAAKLLLESMSEKAQILVIRTQRKGSVSNQTLSRNNGFM
                     QYIQEFNLGNQYELINVEFKNDDEESNRRILSEVFNSNSNIKGAITFNSKVYRLAMHL
                     DALNHTDVRLIGYDLLDQNVSYLQQGVISYLIAQRPDKQAYFTVRDMCKELIFKQEIK
                     KINYVPIDILIKENIEDYMHFTE"
     gene            1405..2652
                     /locus_tag="VI413_00760"
     CDS             1405..2652
                     /locus_tag="VI413_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tagaturonate epimerase family protein"
                     /protein_id="HEY6913177.1"
                     /translation="MKLGKFSLGIGDRFSHQGVAQLRGIMKANSHGLDISPVWNKSNR
                     EHTYVHSVPGDVREEADAAVAELGFTGKYFVDADHINLGNVAPFVDSSNFFTLDVASF
                     IGKESKPEDIISFVASCDKYLGKLMIPGIEHPLVVTKEFLEVIAGKFLAATQQASEIY
                     NFLKTAKGEGNFITEVSMDEVESPQTPIELLFILKMLADKGVPVQTIAPKFTGRFNKG
                     VDYTGDVNQFAKEFEEDVLILDYATKEFGLPEELKLSVHSGSDKFSIYPIMADVIKKH
                     DKGLHVKTAGTTWLEEVIGLAVAGDDALEAAKYIYEHSIGRKDELCAPYADVIDIDDS
                     KLPSVEEVNTWSSEKFANTLSHIPGNAEYNPNFRQLIHVAYKVASEMGKTYTDLLEKY
                     PDVIGACVEENIYERHLKRLFNL"
     gene            2769..>3435
                     /locus_tag="VI413_00765"
     CDS             2769..>3435
                     /locus_tag="VI413_00765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6913178.1"
                     /translation="MRNLFDIKGRVIVITGGTGVLGSCMVEYLAEQGAKVVVLARNKE
                     TGDKLVNGILAKGQEAIFLQSDVNDKAMLEQNCADVIAKYGRVDVLINGAGGNMPGAT
                     IGPDKTIFDLDVDAFKKVVDLNLFGTVIPTMVFAKVMTEQKQGNIINISSESALRPLT
                     RVVGYGAAKAAVTNFTKYLAIELATKYGEGLRVNAFAPGFFISEQNRALLTNPDGSLT
                     ARGN"
BASE COUNT         1086 a          563 c          716 g         1070 t
ORIGIN      
        1 ctgttgtttc tctgtttccg acaggcaaaa aacttgacgt ttgaatagtt ttttgccgtt
       61 aaaaatatgt ttttgaatat gtttttcaga gttttttgtt tctgcgaaaa tgaaagtagg
      121 cttataatct gttgttgtac aatgacataa ttgtttttaa gacgataaaa ccactttccg
      181 tgttcgccca cgaagataca aataatttta tatttacgaa atatgtacta cttttgtgtg
      241 aaattattat tgtgtgcgaa cacggaatta ttgtttatat acaaatgaaa gaaataaata
      301 caaaaatacg aataaaagat atagccacat tggccggtgt atctgaagga actgttgaca
      361 gagttttgca tcaacggggc gatgtttccg aaaaaagccg ggcagctgta acaaaggtgc
      421 tggaagaaat gaattatact ccgaatttgt ttgcacgttc actggcatca aaaaaacagt
      481 atcggtttgt ttgtttattt ccacaatacg aacagggcga atactgggag attgttgaca
      541 agggattcag tctggctgca aaggatttta tccatcataa tgttcatatt gataaacgtt
      601 gttttaatca gtttgatgca aattcattca taactgtttc caatgaaatt ttgaataatg
      661 aacctgatgc agtattgatt tcacccattt tcagggaaga aaccataaaa tttacatcag
      721 aacttgctgc acgaggtatt ccattttcat ttatagactc tactattgat gatgtagatt
      781 ttctgactta ttatggtcag aattcattta aaagcggata tattgctgct aaactattat
      841 tagagtcgat gtcggaaaag gcacagatat tagtaatcag aacacagcgc aaaggctctg
      901 tttcgaatca aactctttcg agaaataatg gtttcatgca atatattcag gaatttaatc
      961 ttgggaatca gtacgaatta attaacgtag agttcaaaaa tgatgatgag gaatctaacc
     1021 gtagaatatt atccgaagtt tttaattcaa attccaacat taaaggagct ataacgttta
     1081 attccaaggt gtacagactt gcaatgcact tagatgcttt aaaccatacc gatgttcgtt
     1141 taataggtta tgatttgctg gatcaaaatg tcagctatct ccagcagggt gtcatttctt
     1201 atcttatagc tcaacgtccg gataaacagg cttattttac tgtccgcgat atgtgcaagg
     1261 aacttatatt taaacaggaa atcaaaaaaa taaattatgt acccatcgat attttgatta
     1321 aagaaaatat tgaggattac atgcatttta ccgaataatt ttcaatatta aattgtaata
     1381 cattaaccat taaatttttt tatcatgaaa ttaggaaaat tcagtttagg tattggcgat
     1441 cgcttttcgc atcagggtgt ggcacagcta cgcggtataa tgaaagcaaa cagtcatggg
     1501 ttagatatta gtccggtatg gaacaaatcg aaccgcgagc atacatatgt acattcagtt
     1561 ccgggggacg ttcgcgaaga agcagatgct gcagttgcag aactcggatt tacgggtaaa
     1621 tattttgttg atgccgatca tattaattta ggtaatgtag ctccgtttgt agattcatcc
     1681 aacttcttta cacttgatgt ggcttcattt atcggaaaag aaagcaaacc ggaggatatc
     1741 atttcttttg tagcttcatg tgataaatat ctgggtaaat taatgattcc cggaattgag
     1801 catccattgg ttgtaacaaa ggaatttctg gaagttattg ccggcaaatt tttggctgct
     1861 acccaacagg cttccgaaat atataatttt ttaaaaacag caaaaggaga aggcaatttt
     1921 ataacagaag tgtctatgga tgaggttgaa agtcctcaaa cacctataga gttgcttttt
     1981 attctgaaaa tgcttgccga taaaggtgtg cctgttcaga caatagctcc taaatttacc
     2041 ggacgtttta ataaaggtgt tgattatacc ggcgatgtga atcagtttgc taaggaattt
     2101 gaagaagatg tgctgattct tgattatgcc acaaaagaat tcggacttcc ggaagaattg
     2161 aaattaagcg ttcactcagg cagtgataaa ttctctattt atccgattat ggctgacgta
     2221 attaaaaaac acgataaagg acttcacgta aaaacagcag gtaccacctg gctcgaagaa
     2281 gttatcggat tggctgtcgc cggtgatgat gccctggaag ctgccaaata tatttacgaa
     2341 cattctattg gtcgcaaaga tgaactttgt gcaccttatg cagatgtgat tgatattgac
     2401 gattcaaaat tgccgtcggt agaggaggtg aatacatggt caagcgaaaa atttgccaat
     2461 acattaagtc acattccggg aaatgctgag tataacccta atttccgcca gttaattcac
     2521 gtagcttaca aagtggcttc cgaaatggga aagacctata ctgatttgtt ggaaaaatat
     2581 cctgacgtaa ttggtgcctg cgttgaagaa aacatctacg aacgtcattt gaaacgcttg
     2641 tttaatttat aaaaacgacc cctaacccct aaaggggaat atgactagtt tcattcttga
     2701 ttttttttat cagagataat actaactaaa ttccccttta ggggctgggg gttaaattga
     2761 aacacaatat gagaaactta tttgatatta aaggccgtgt gatcgtaatt accggtggaa
     2821 caggtgtttt gggcagttgc atggtggaat acctggccga acaaggtgcg aaagtagttg
     2881 ttttggcacg taacaaggaa accggagaca aactggtgaa tggcattctg gctaaaggtc
     2941 aggaagctat ttttctgcaa tcggatgtaa acgataaagc tatgctggaa caaaactgtg
     3001 ccgacgtaat agctaaatat ggtagggttg atgttttaat caatggtgcc ggtggtaaca
     3061 tgcccggagc aactattgga ccggacaaaa caatctttga tttggatgtg gatgcattca
     3121 aaaaagtagt tgatctgaat ctattcggaa cagttatccc tactatggtt tttgccaaag
     3181 taatgactga gcaaaagcag ggaaatatta tcaatatctc ttctgaatca gctttacgtc
     3241 cgttgactcg tgtggtgggt tatggtgctg ccaaggctgc tgtaactaac ttcacaaaat
     3301 atcttgccat tgagttggct acaaaatatg gtgaaggttt gcgcgtaaac gcttttgctc
     3361 cgggtttctt tatttctgaa caaaaccgtg ctttgctaac caatcccgat ggctcgttga
     3421 cggctcgtgg aaata
//
LOCUS       DATDNM010000044         7605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2033802, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000044 DATDNM010000000
VERSION     DATDNM010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7605
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2033802"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..461
                     /locus_tag="VI413_00770"
     CDS             <1..461
                     /locus_tag="VI413_00770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913179.1"
                     /translation="GQTGSTVSTTGVYRINLDFTIGASTMTQITKCEFFFCPTNSFPF
                     ELDYVANGVWTAKSKPITFKQESWGRDERYKFKMTTDKGEEWWGAPASLDSRPTGIDS
                     YYYLFPADNNQWNNKFKFAGEMDGALVDMSVIMSATGPYTHSVKKVGVQQ"
     gene            527..1657
                     /locus_tag="VI413_00775"
     CDS             527..1657
                     /locus_tag="VI413_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 76 protein"
                     /protein_id="HEY6913180.1"
                     /translation="MKKLFIICIAFVGLLSSCDENYNDVVVSIDGYAIDWNAAADSST
                     TSIITNFWNPTAQFFNDRTSGGNFQYWPQAHALDVLIDAYLRTNDAKYKTYFEQWYKG
                     VPTANGGSFFNYLYDDMEWNALTLLRLYNATNDAKYKTSVIAVWKDIQTGWNDQGGGG
                     IAWNKGDLWSKNACSNGPACILAARLFQQFGDVSDKEWALKIYDWEKSVLYNPSNGAI
                     SDNLNAKTGVLSNYISTYNQGTFIGSAVELYKITGEKTYLNDAIKAANYTINKLTSNR
                     ILNTEGNADLALFKGIFVRYFTQLIQTPGLDSATKNRFVLFLKYNADKFWRNGMNKQY
                     VICTSDWTKAPYFLSETELNAQSSACMLMEAAALLDKAGNFK"
     gene            1804..3177
                     /locus_tag="VI413_00780"
     CDS             1804..3177
                     /locus_tag="VI413_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 125 protein"
                     /protein_id="HEY6913181.1"
                     /translation="MMVLLVSNLLAQNFPKVRLDESKRNFVSPPIESTITKMHTTIKD
                     PELAWMFENCFPNTLDRTLNFTIKNGKPNTFVITGDIYAMWLRDCSAQVWPYMHYMKQ
                     DPKLQEVIAGVINRQVECVLIDPYANAFNFGKDGSQWMSDNTKMRPELHERKWEVDGL
                     CYVIRLSYNYWKLTGDVSHFDAEWQNAMKLIVKTFIEQQRKTDRGPYSFTRNTAKASD
                     TQFGDGFGNPVRPTGMICSTFRPSDDATTYGYLIPSNAFAVVSLRQLAEMARVITKDV
                     AFADKCNILASEVDAAIKKYAIVKHPKYGKIYAFEVDGYGNYLMMDDANVPSLLALPY
                     LGYLQANDNIYRNTRKFALSEDNPYFYKGTAGEGIGGPHVGPDMIWPMAIIMRAMTSQ
                     DTKEIESCLRTLKYTHAGTGFMHETFNKNDPKNFTRSWFAWANTLFGELLIKIEKEHP
                     ELLEKVF"
     gene            3366..4397
                     /locus_tag="VI413_00785"
     CDS             3366..4397
                     /locus_tag="VI413_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 76 protein"
                     /protein_id="HEY6913182.1"
                     /translation="MLNETYPLDPKNIVSYVINQDTTTTKRVAYLWPTSGVLSAVVAL
                     LETTKDIRYKTMLDTDVLPGLQRYYDSSRSPACYQSYLRSEGLHDRYYDDNVWLTIDF
                     AELALLTKEKKYLEKAENIWKFVISGWDNKLDGGIYWCEQKKESKNTCSNAPSAVAAA
                     KLYQATKKREYLIWAKKIYTWTKLNLQDKSDFLYYDNISLNRRIGKHKYAYNSGQMLQ
                     AAVLLYKITNDKSYLLDAQNIAASGYNFFFENRTDVNDKNRKYIKNGNIWFTAIMLRG
                     YVELYQVDKNKVYLDAFKESLDFAWKYGRDENGFFDEDWSGKYKKPTKWLLGQAAMVE
                     MYTRMANIN"
     gene            4407..6572
                     /locus_tag="VI413_00790"
     CDS             4407..6572
                     /locus_tag="VI413_00790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004323615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HEY6913183.1"
                     /translation="MNIRKLSLSIFAILCIANVFAANVALQRSTLVGDKIVEFIPVGF
                     DQSKTPSLILKQEPVSIGNVPTGWSLTPEFTFTNNKASASLKISSDISLYGGGEVTGP
                     LLRNGQYIKLWNTDTGAYGVDGGKRLYQSHPWVMGVRKDGTAFGIIFDSSWKAELYTN
                     SDVITYNSEGALFRVYIIDRESSQAVLKGLAELTGTIQMPARWTLGYHQCRFSYGTET
                     RVREIADTFRAKNLPCDVIWMDIDYMNGYRIFTFNETNFPDPKALNDDLHKKGFHSVY
                     MIDPGAKADNNYSVYQSGTQNNVWVKRADGTEYNGKVWPGYSAFPDFTQPSVRDWWAE
                     LYKDFLAKGIDGVWNDMNEPTVFDDDIPESQRTGTMPYDIRHAGGGTLPAGSHLLYHN
                     AYGRLMVEASLKGILAANPDKRPFLLTRSNLLGGQRYAATWTGDNWAGTEHLKLSVPM
                     SITLGLSGQPFSGPDIGGFLNNTSGDLWANWLGFGVFLPFVRGHACAGTNDKEPWAYG
                     EAIEKTSRIALERRYRLLPYIYTLFYNSHKTGLPVMEPVFFANPKDLRLRAEQEAFLL
                     GDNLLVIPSFSTNPTLPHGIWEKLSLIDGDVQDKYQATLKVKGGSIIPVGKIIQNTNE
                     KSFDPLTLIVCLDEQGTAEGQLYTDAGDGWTFRSGDYGLLKFRAKRVGHTVSIQLAGK
                     EGKRKVEQEINKINAEVLLNGKIYKASGSLKSGIKVPIK"
     gene            complement(6721..>7605)
                     /locus_tag="VI413_00795"
     CDS             complement(6721..>7605)
                     /locus_tag="VI413_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009129142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY6913184.1"
                     /translation="NERMKHMMNEQLQLSISSPLKIRKFDYKHFTYPWHFHSEYEIIY
                     IKSGAGNRFVGHSSEDFADGDVLLLGSNLPHYLKSENTYYLQNSLRVQGVIVQFEKDF
                     MHQPIDNYPHFIPIKRLLIDSLKGLYFPAGCSARLIELLEMMPLETGMKQMCSFLELL
                     NVMTEISARQLISPLSSSKDSMSDIPRLNKVILYLNNNYIRNVGLDEIAAVASMNTSA
                     FCRFFKNNTGRTFKHYILELRVSDACKQILSTDKSISQIGAECGFETVSYFNNVFKKN
                     VGFTPSAYKSMMTKNIMD"
BASE COUNT         2439 a         1368 c         1606 g         2192 t
ORIGIN      
        1 aaggacaaac aggatcaact gtgagcacaa caggagttta ccggatcaat ctggatttca
       61 caatcggtgc ttcaactatg actcagatta cgaaatgtga attcttcttc tgcccgacaa
      121 attcgttccc gtttgagctg gattatgttg ctaatggtgt atggacagct aaaagcaaac
      181 caattacctt taaacaggaa agctggggta gagacgagcg ctataaattt aaaatgacaa
      241 ccgataaagg cgaagaatgg tggggagctc cggccagctt agattcacgg ccaacaggaa
      301 ttgatagtta ttactacctg tttccggctg ataataacca atggaataat aagttcaaat
      361 ttgcaggtga aatggatggt gccctggtgg atatgagtgt gataatgagt gctacaggac
      421 catacactca ctcagtaaaa aaagtaggag tacaacaata aataaatcag ttgtttgagc
      481 agatctgaac aacatctgct caaacaacaa ttttaaagaa catattatga agaaactttt
      541 tattatatgc atagcttttg ttgggctatt atcctcttgt gatgaaaatt acaacgatgt
      601 ggttgtttct atcgatgggt atgccattga ttggaatgct gctgccgata gtagtacgac
      661 aagcataatc acaaactttt ggaaccctac ggcccagttc tttaacgacc ggacaagtgg
      721 aggtaatttc cagtattggc cgcaggctca tgctctggat gttttgattg atgcctattt
      781 gcgcaccaac gatgccaaat ataaaaccta tttcgaacag tggtataaag gtgttccgac
      841 ggcaaacggc ggatcatttt tcaattatct gtacgacgac atggaatgga atgcgctgac
      901 attgcttcgg ctctataatg ctaccaacga cgcaaaatac aaaacgtctg ttatagccgt
      961 gtggaaagat attcaaaccg gttggaacga tcagggcggc ggcggaattg cctggaacaa
     1021 aggcgatttg tggagcaaaa atgcttgctc caacgggcct gcctgtattt tggctgcacg
     1081 tctttttcaa caatttggag atgtttctga taaagaatgg gcattgaaaa tatacgattg
     1141 ggaaaaaagc gttttgtaca atccttcgaa tggagccatt tcggataatt tgaatgccaa
     1201 aaccggagtg ttaagcaact atatatcaac ttacaatcag ggaacattta ttggttcggc
     1261 tgtggaattg tacaaaatta caggtgaaaa aacgtatttg aatgatgcca taaaagctgc
     1321 caactatacc attaataagt tgaccagcaa cagaattctt aatacagaag gaaacgccga
     1381 tttggcttta tttaagggaa tctttgtacg ctatttcact caactcattc aaaccccggg
     1441 tctggatagt gctaccaaaa atcgtttcgt gttgttcttg aagtacaatg cggataagtt
     1501 ctggcgtaat ggaatgaata aacaatacgt aatctgtact tccgactgga caaaagctcc
     1561 atacttcctt tcggaaacgg aactgaatgc acaatcgagc gcatgcatgc ttatggaagc
     1621 agcggctttg ctggataaag ccggtaattt taaataaggt gctgaatatt tagcatttct
     1681 gttgggcgac tcttattggg tcgcccaatt atttaaattc agaacactat tgttaaatgt
     1741 gaattattcc caaaaatgaa aaataaaaga aactacctgt cgaaattatt atttttaatg
     1801 ttcatgatgg tgcttttggt atcaaatcta ttagcccaaa atttccctaa agttagattg
     1861 gatgaatcaa aacggaactt tgttagtccg cccattgaga gtacaataac aaaaatgcac
     1921 acaacgatta aagatccgga attagcctgg atgtttgaaa attgttttcc aaataccctt
     1981 gacagaactc ttaacttcac aataaaaaat ggcaaaccga atacatttgt cattacaggt
     2041 gatatttatg ccatgtggtt gcgcgattgt tcggctcagg tctggcccta tatgcactat
     2101 atgaaacaag accccaaatt gcaggaagtc attgcagggg ttattaatcg tcaggttgaa
     2161 tgcgtattaa tagatcctta tgctaatgcg ttcaattttg gaaaagatgg cagccaatgg
     2221 atgagcgata acaccaaaat gcgtcctgaa ctgcatgaac gaaaatggga ggttgacggg
     2281 ttgtgttatg ttatccggtt gagctacaac tattggaagc ttaccggcga tgtttctcat
     2341 tttgatgcag aatggcaaaa tgcaatgaaa cttatcgtga aaacattcat tgagcaacaa
     2401 cgtaaaacag accgcggccc atacagtttt acccgcaaca ccgccaaagc atccgacacc
     2461 cagtttggtg atggttttgg caatccggtt cgtccaacgg gaatgatatg ctctaccttc
     2521 cgcccttccg atgatgcaac cacgtatggt tatctgatcc cttccaacgc ttttgctgtg
     2581 gtatcgctcc gtcagttagc cgaaatggcc cgcgtaataa caaaggatgt tgcttttgct
     2641 gataaatgta acatcttagc ctccgaagtg gatgctgcca taaaaaagta tgccattgta
     2701 aagcacccta aatatggtaa aatatatgct tttgaagtag atggatatgg taactacctc
     2761 atgatggacg atgctaatgt gccttcctta ttggctttac cttatctggg atacttgcag
     2821 gctaatgaca atatttatag aaatacacgc aaatttgctc tgagcgaaga caacccatat
     2881 ttctacaaag gaactgctgg tgaaggaatt ggaggacctc acgtaggccc tgacatgatt
     2941 tggccaatgg ctataattat gagagctatg acgtcacaag atacaaaaga aattgaatcc
     3001 tgccttcgta cgttaaaata cactcatgcc ggtaccggat ttatgcatga aactttcaat
     3061 aaaaatgacc cgaaaaattt cacacgttcg tggtttgcat gggctaatac gttgtttgga
     3121 gagctgctga tcaaaataga gaaagaacat cccgagttat tagaaaaagt attttaaaat
     3181 ataacatatt gttagaattt aaatttggct aagtttatta tatgaaaaag attgtgattg
     3241 ttttttttag tttaacaata tctatattga gttttgctgg caaagaacca aaccggtata
     3301 ttaattttgc tgatagtaca ttaacgagga tatataaatt ttacagagca gaaaatggaa
     3361 accatttgtt gaatgaaacc tatccattag atccgaaaaa tattgtttca tacgttataa
     3421 atcaggatac aacgaccact aaacgggttg catatctgtg gccaacttca ggtgttttat
     3481 ctgctgttgt ggctttgctg gaaaccacaa aagatattcg ttataagact atgctcgaca
     3541 ccgatgtttt accgggactg caacgatatt acgattcgag tcgttcacca gcttgttatc
     3601 agtcctactt acgttcggaa ggattgcatg atcgttatta cgatgataat gtgtggttga
     3661 ctattgattt tgcagaactt gcattgctga caaaagagaa gaagtatctt gaaaaagcag
     3721 aaaatatatg gaaattcgta atcagtggct gggacaataa attagatggt ggaatttatt
     3781 ggtgtgaaca aaagaaagaa tcgaaaaaca catgctctaa cgcaccttct gctgtagcag
     3841 ccgcaaaatt atatcaggca acaaaaaaaa gagaatatct tatatgggca aaaaaaatat
     3901 atacctggac gaagcttaat ttgcaggaca aatccgattt tctgtactac gacaacatct
     3961 ctttaaaccg aagaattgga aaacataagt atgcatataa cagcggacaa atgcttcagg
     4021 cagctgtgtt gttgtataaa attacaaatg ataaaagcta tttgctcgat gcgcagaata
     4081 tagccgcatc aggatacaac tttttcttcg aaaaccggac agatgtaaat gataaaaaca
     4141 ggaaatacat taaaaatggg aatatatggt ttactgcaat catgttgaga ggttatgtag
     4201 aactatatca ggtagacaaa aataaagtgt atttagatgc atttaaagag agtctggatt
     4261 ttgcctggaa atatggcaga gatgaaaacg gtttttttga tgaagactgg tcaggcaaat
     4321 ataaaaagcc aaccaaatgg ctgttagggc aagctgccat ggtagaaatg tatacacgta
     4381 tggcaaatat caattaaaat aatcatatga atataagaaa gttatcacta tccatatttg
     4441 cgattttatg tattgcaaat gtttttgcag ccaatgttgc tctacaacgc tcaacgctgg
     4501 ttggcgacaa aatagtcgaa tttattccag ttggattcga tcagagcaaa actccatcac
     4561 tgattctgaa gcaagaaccg gtttctattg ggaatgttcc aacggggtgg tcgctgactc
     4621 ccgaatttac ctttacaaac aacaaagcaa gtgcatcgct taaaatatcg agtgatataa
     4681 gcttgtacgg aggtggcgaa gtaacagggc cactactgcg aaacggacaa tatataaaat
     4741 tgtggaatac cgataccgga gcttacggtg ttgatggtgg aaaaagactc tatcaatcac
     4801 atccttgggt tatgggtgta agaaaggatg gaactgcctt cggaattatt ttcgacagct
     4861 cgtggaaagc ggaattgtac acaaattccg acgtgattac ttacaactcc gaaggtgctc
     4921 tttttcgagt ttacatcatc gacagggaat cgtcacaggc agtattgaaa ggactggctg
     4981 agttgacagg tacgattcaa atgcctgcac gttggacatt gggttaccac caatgccgtt
     5041 tttcgtacgg aaccgaaacg cgtgtgcgtg aaattgccga tactttccgt gctaaaaacc
     5101 tcccatgtga tgtaatatgg atggatattg actatatgaa cggatatagg attttcactt
     5161 ttaatgagac taactttccc gatccaaagg cattgaatga tgatttgcat aaaaaaggat
     5221 ttcattcagt ttatatgatt gatccgggag ctaaggctga taataattat agcgtatatc
     5281 agtccggaac tcaaaataac gtgtgggtaa aacgtgctga tggtacggaa tacaatggta
     5341 aagtatggcc gggctatagt gcattccctg actttacaca gcctagcgta agggattggt
     5401 gggcagaact ttacaaggat ttcctggcaa aaggaattga tggtgtttgg aatgatatga
     5461 atgagccaac ggtttttgat gacgatatcc ctgagagtca gcgtacagga accatgccat
     5521 acgatattcg tcatgctgga gggggaactc ttccagccgg atcacacctt ttgtatcaca
     5581 atgcctatgg cagattaatg gtagaagcct cgctgaaggg gattcttgcc gcgaatccgg
     5641 ataaacggcc gtttctgctt acacgttcca atcttttagg cggacaacgc tatgctgcaa
     5701 cctggaccgg tgacaattgg gctggcacag aacacctcaa actgtctgtt ccaatgtcta
     5761 taactttagg attatcggga cagcctttca gtggtccgga tataggtggt tttttgaata
     5821 atacttccgg agacttatgg gcaaattggc ttggatttgg agtgttttta ccttttgttc
     5881 gtggtcacgc ctgtgccgga acaaacgaca aagagccctg ggcttatggc gaggcaatag
     5941 aaaaaacctc gcgtattgct ctggaaaggc ggtatcgttt gctcccatat atttacacgc
     6001 tgttttataa ctctcacaaa acaggtttgc cggttatgga acctgtattc tttgcgaatc
     6061 caaaagatct gagactgaga gcagagcaag aagctttctt attgggtgat aatttgcttg
     6121 ttataccttc attttcaaca aatcctactt tgccacacgg tatttgggag aaactgagtt
     6181 taattgacgg cgatgtgcag gacaaatatc aggcaacatt gaaagtaaag ggtggaagca
     6241 ttatacctgt tggaaaaatc attcaaaata caaacgagaa atcatttgat ccgcttacgc
     6301 ttattgtttg cctggatgaa caaggaactg cagaaggtca gctttatacc gatgccggag
     6361 acggatggac ttttcgttct ggcgattatg gcctgctgaa atttagagca aaacgtgttg
     6421 gacatacagt aagtatacaa ttggccggaa aagagggtaa aagaaaggta gaacaagaaa
     6481 taaataaaat caacgccgag gttcttttga atgggaaaat atataaagca tccggctcac
     6541 tgaaaagcgg aattaaggtt ccgattaaat agaacttatg aactaaaagt aatttttgga
     6601 ctctatgaat tcagaagtca tatttaaaag aagcctggtt aacaaaacta acctttataa
     6661 aacagcaaaa gaacttcaat aacatattca gtttgtaacg atttattcga aataagtgca
     6721 ctaatccatt atgttttttg tcatcataga tttgtaggca gaaggagtaa aaccaacatt
     6781 cttcttgaat acgttattaa aatatgatac tgtttcaaat ccacattctg ctccaatctg
     6841 agatattgat ttgtcagttg agagtatctg tttacaggca tcggatactc tcaattctaa
     6901 aatataatgc ttaaaagttc ttccggtatt gtttttaaaa aatctacaaa atgcagaagt
     6961 attcatagaa gctacagctg caatttcatc taagccgaca ttccgtatgt aattattatt
     7021 caggtataaa ataactttat tgagtctcgg aatatctgac atggaatctt tagatgatga
     7081 taaaggcgaa atcagttgcc ttgccgaaat ttctgtcatt acatttaaaa gctctaaaaa
     7141 tgaacacatt tgtttcatac ctgtttctaa aggcatcatt tccaaaagtt ctattagccg
     7201 ggcggagcat cccgccggga aatagagtcc cttcaatgaa tcaattaaga gccttttaat
     7261 tggtataaaa tgaggataat tgtcaatcgg ctggtgcatg aaatcttttt caaattgcac
     7321 aatgactcct tgcaccctta aactattttg taaatagtaa gtattttcac tttttaaata
     7381 atgtggaaga tttgaaccaa gtaacagcac atcgccatca gcaaaatctt cggaactatg
     7441 accaacaaat ctattaccag ctccactctt aatgtagatt atttcatact ccgaatgaaa
     7501 atgccacgga taagtgaaat gtttatagtc aaactttctg atttttaatg gtgaagatat
     7561 ggataattgc agttgctcgt tcatcatatg tttcatgcgt tcatt
//
LOCUS       DATDNM010000045         2231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1072633, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000045 DATDNM010000000
VERSION     DATDNM010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1072633"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1208
                     /locus_tag="VI413_00800"
     CDS             <1..1208
                     /locus_tag="VI413_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016662084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEY6913185.1"
                     /translation="ETADSKFYIQDDLGDTLLFDYIAGGRKTGVFAEGEKEMLRKTMR
                     KLPEVQVLGAKGFDFSVCYPQPEFNERSILWDLNYFKYCFLKSTGLEFQENRLEDDFY
                     KLSEILLRAKTDTFMYRDFQSRNVMVKDGQPYFIDFQGGRKGPLQYDVASFLWQAKAQ
                     YNDELREELLQTYLDALKELVTVDEAEFRNQLAHFVLFRTLQVLGAYGFRGYFEKKPH
                     FLQSIPYAIENLRSLLKTGNSEYPYLLDILEQMTELEQFREVEVRKPLVVKVYSFSYK
                     KGIPQDNSGNGGGFVFDCRAVNNPGKYERYQSLTGLDESVKVFLEEDGEILTFIDHAF
                     ALVDASVKRYKDRGFTNLMISFGCTGGRHRSVYSAQKMAEHINEKFGVEVQLVHREQN
                     IEQDFASRD"
     gene            1272..2030
                     /locus_tag="VI413_00805"
     CDS             1272..2030
                     /locus_tag="VI413_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005678476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY6913186.1"
                     /translation="MKAMIFAAGLGTRLKPLTDNLPKALVPIAGKPLLEHVILKLKTA
                     GFDEIIVNVHHFPDQIIDFLKANDNFGIRIEISDERDLLLDTGGGIRKAAWFFDDGKP
                     FLVHNVDILSNVDLKELYHQHLRTNSLATLVVSQRDTFRYLLFDDNLRLNGWINEKTG
                     ETKPAGLKKIESYNKLAFSGIQVLSPQVFGLMENLAPKFPIMDFYLSNTSTQTISGFV
                     PLNYNMLDVGKLNVLDEAERFVTNTPLTPKGELL"
BASE COUNT          642 a          406 c          517 g          666 t
ORIGIN      
        1 cggaaactgc tgacagcaaa ttctatattc aggatgattt gggcgatacg ctgctttttg
       61 attacatcgc cggtggccgt aaaacaggag tttttgccga aggtgaaaaa gaaatgttgc
      121 gtaaaaccat gcgtaaactt cccgaagttc aggtgctcgg ggcgaagggg tttgactttt
      181 cggtttgcta tccgcaaccg gagtttaatg agcgttctat tttgtgggat ttgaattatt
      241 tcaaatattg tttcctcaaa tctaccggac tggaatttca ggagaaccgt ctggaagacg
      301 atttttacaa attgtcggaa atattgcttc gtgccaaaac tgacacgttt atgtaccggg
      361 attttcagag ccgcaatgtg atggtaaaag atggccaacc atattttatc gattttcagg
      421 gcgggcggaa agggccattg caatacgacg ttgcttcatt cctttggcaa gccaaagcgc
      481 aatacaacga tgagttgcgt gaagaactgt tgcaaactta cctggatgct ttgaaggaat
      541 tggtgactgt agatgaagcc gaattccgaa accaactggc tcattttgta ttgttcagaa
      601 ccttgcaagt gttgggagct tatggtttcc gaggatattt tgagaagaaa ccgcatttct
      661 tacagagcat tccatatgct atagaaaact tacgttcatt actaaagacg ggcaactcgg
      721 aatatcccta tttgcttgat attttggagc aaatgactga actggagcaa ttccgcgaag
      781 ttgaagttcg caaaccattg gtagtgaaag tatatagttt ttcttataaa aaaggtattc
      841 cgcaggataa ttcaggaaat ggaggaggat ttgttttcga ttgccgcgca gtgaataatc
      901 cgggaaaata cgagcgatac caaagtctaa ccggattgga tgaatcggtt aaggtgtttc
      961 tggaggaaga tggcgagata ttgactttta tcgaccacgc ttttgccctc gtagatgcat
     1021 ctgtaaaacg ctataaagac cgtggcttta ccaatcttat gatcagcttt ggttgtacgg
     1081 gtggacgcca cagatcggtt tattccgcgc aaaaaatggc tgagcatatc aatgaaaaat
     1141 ttggtgtgga ggtgcaattg gttcatcggg aacaaaacat agaacaggat tttgcttcaa
     1201 gagattaaga aaactaaata acctatggtc ggagttggaa ctccgacctc ccaacaaaaa
     1261 atacaaccaa tttgaaagcg atgatttttg ccgctggttt aggcactcga ttgaaaccac
     1321 ttactgataa tctgcccaaa gctttggtgc caattgccgg aaagccgttg ttggagcatg
     1381 tgattttgaa acttaaaaca gccggtttcg atgaaatcat tgtcaacgtg catcatttcc
     1441 ccgatcagat tattgatttt ctgaaagcaa atgataattt cggcattcgc attgaaattt
     1501 ccgatgagcg tgatttgttg ttggataccg gaggtggaat ccgcaaagca gcttggttct
     1561 tcgacgatgg aaaacctttt ctggtgcata atgtagatat cctttcgaat gttgatttaa
     1621 aggaattata tcaccaacac ttgcggacaa acagtttggc tacgttggtt gtcagtcagc
     1681 gcgatacgtt ccgttatctt ctctttgatg ataacctgcg actgaatggg tggattaacg
     1741 agaagaccgg agaaacaaaa cccgcaggtc tgaagaaaat tgaatcatac aataaactgg
     1801 ctttttcagg cattcaggtt ctttctcccc aggtttttgg attgatggaa aatctcgcac
     1861 ccaagtttcc aattatggat ttttacttgt caaatacttc aactcaaacg attagtggct
     1921 ttgttcctct gaattataat atgttggatg tggggaaatt gaatgtgctg gatgaagcag
     1981 aaaggtttgt gacgaataca cccctaaccc ctaaagggga attattatag ttttgtctcc
     2041 taaaactata aatttataat tgagtttaat tagacgaaag taatcttgtt cccctttagg
     2101 gtaggggttc agggcactat catttgaatt gcatttggaa tgatgctgat tgtaaacgga
     2161 gaagctccat tgacaatgat tccgtcagct tccatgagtg catttttatc gcattgtacc
     2221 aacaggcttt t
//
LOCUS       DATDNM010000046         2726 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1287005, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000046 DATDNM010000000
VERSION     DATDNM010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2726
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1287005"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..514)
                     /locus_tag="VI413_00810"
     CDS             complement(<1..514)
                     /locus_tag="VI413_00810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913187.1"
                     /translation="MKRKIIGILVLLLLSGQFARAILVRFPNLTGVVGDTLTVPMYVD
                     DDLAGNNVLSFQFNIGCSSSAVKLLGVYSTGTISAPFNTLSVKTGTNYFTIAGAGSSS
                     LSGKGILLNLKLVLLASGTYLQFNNGKTDNYFNEGLPVMTFTNGYITISPKPVIYVSP
                     STVTMNVGETQ"
     gene            complement(547..>2726)
                     /locus_tag="VI413_00815"
     CDS             complement(547..>2726)
                     /locus_tag="VI413_00815"
                     /inference="COORDINATES: protein motif:HMM:NF013156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913188.1"
                     /translation="IVPENYAVDATIPKRDFGGYTNMTYYVYGTLTVNSGTQITIPKG
                     VVFKSRGISVFDVSGRITIDGTALEPVVFTHEYDDSYGNPFDTNNNGSTTLPYRSSYG
                     LTFQDISNDLSTVKYCVFNHFDRGIQLLQSSPVIQNSLFKNCNWGVVLNGVSNPVIDN
                     NAFNDLAYTPICISLVSYPSSSVGNTLSGTTYKAIGVISEELVQDASLERRNFAGINN
                     IPYFFSGNYAVGTSVTLTIKPGVVCKFTNYASLNVKRGLLALGGSSADSTIVFTDYRD
                     DFYGGDTNSDSTATAPRANGYWFGINFEDVALDNLCKLDHCIIKYAGYYSSYSAISMT
                     AASPTITNCLISENANGVLINGSSNPKINNCDFFNNATYAVNNVNKAFDVDATNCWWG
                     DNSGPTHASNAGGKGGLISDKVVYSPWKTTGSTNPTTGDVSLNGIVQAYDASLVLQKV
                     VNLITFSPLQQKVADVSGDGSVTSFDASLILQYVAGINSVFPGEMKAKAVQNDVILSY
                     GSVTSNADHTFTVPVLVENASQSIALDIAATFDRAVLEPISVLAGADTGNRLFASNID
                     KNSGVIGIGIAGTDRLSSNAVVANITFKLAGNVAPNTVTTLGIDKFLANETDYSPFAV
                     PKVIQISELASGLNPLNENLQFGIYPNPVKSTSKVYYNVPADGTRISIRLFDVTGKQV
                     EVLVNATQGAGTYSIDLNKKERGIYFLRMTSGNETSTQKVIVE"
BASE COUNT          765 a          624 c          558 g          779 t
ORIGIN      
        1 gctgcgtttc ccctacattc atagttactg tggacggact aacgtaaata accggcttgg
       61 gactgatggt gatgtacccg ttggtaaaag tcatcacagg caatccttcg ttgaaataat
      121 tgtcagtttt accattgttg aattgcaaat aggtgcccga agcaagtaaa acaagtttga
      181 gattcaacag tattccttta cccgacaacg aacttgaacc ggctccggca atggtgaaat
      241 aatttgtgcc ggtttttacg cttaacgtat taaacggtgc agaaatagtc cctgtggaat
      301 aaactcccaa caacttaaca gcagaactgc tacagccgat attaaactga aatgagagta
      361 cattatttcc ggccagatca tcgtcaacgt acatgggcac agtgagtgtg tcgcccacaa
      421 ctccggtcag gttcggaaac ctgaccaaaa ttgcccgggc aaactgtccg cttaataaaa
      481 gcagaaccag tattccaatt attttccgtt tcataatcat tggttttaga agatgaataa
      541 aaacggttat tccacaatca ctttttgagt gctggtttca tttccggagg tcattctcag
      601 gaaataaatt cctctctctt tcttgttcag gtcaattgaa tatgtacccg caccttgcgt
      661 tgcattcact aatacttcca cttgctttcc ggtaacgtca aacaacctga ttgaaatccg
      721 ggttccatct gccggcacat tgtaatatac cttcgaagtc gattttaccg ggtttggata
      781 aatgccaaac tgtaagtttt cgttcaatgg atttaatccg gaagccagct cgctgatctg
      841 aatcactttc ggtactgcaa acggactgta gtcggtttca ttagccagga acttgtcaat
      901 acccagcgtg gtaacagtat tcggagctac atttccggcc agtttaaatg tgatattggc
      961 tacaactgcg ttgctgctta accggtctgt accggcaatg ccaattccga ttacaccgga
     1021 gtttttatca atattcgaag caaataaacg gttgcctgta tctgctccgg ccaataccga
     1081 tattggttcg agaactgccc tgtcgaacgt agcggcaata tccagcgcta tgctttgcga
     1141 tgcattttcg accagaaccg gaacagtgaa tgtatggtcg gcatttgaag taacggaacc
     1201 gtacgaaaga atcacatcgt tttgaacggc tttcgctttc atttcgcccg ggaatacact
     1261 gtttataccg gcaacatatt gcaaaatgag cgaagcatcg aacgatgtca cacttccgtc
     1321 gccacttaca tcggctactt tctgttgaag tggtgaaaac gttatcaggt tcactacctt
     1381 ttgaagtacc agcgatgcat cataagcctg aacaatacca tttaagctga catcgcccgt
     1441 ggttggattg gtcgaaccgg tagttttcca gggggagtaa actactttat ccgagattaa
     1501 accgcccttt ccacctgcat tcgatgcatg tgtcggcccg ctgttatcac cccaccagca
     1561 attggtagca tccacgtcaa acgctttgtt cacattattt acagcatagg tagcgttatt
     1621 gaaaaagtcg cagttattaa tctttggatt tgaagaacca ttgattaaaa ctccattggc
     1681 attttccgaa attaaacagt tcgtaatcgt cgggctggct gcagtcattg aaatggcaga
     1741 atagctgctg taatatcctg catattttat gatacaatgg tcaagtttac acaaattatc
     1801 gagcgctaca tcttcaaaat taattccgaa ccaatatccg tttgcccttg gcgctgtggc
     1861 cgtactatcc gagttggtat cgcccccata gaaatcatcg cgataatcgg tgaaaacaat
     1921 ggtgctgtcg gcagatgaac cacccaaagc cagtaagcca cgttttacat ttaagcttgc
     1981 ataattggtg aatttacaaa ccaccccggg ttttatcgtc agtgtaacac ttgttccaac
     2041 ggcataattc cccgagaaga aatacggtat attatttatt ccggcaaagt tccttctttc
     2101 caggctcgca tcctgaacca actcttcgga tataaccccg atagctttgt acgttgttcc
     2161 cgaaagtgta ttacctaccg aagaagacgg ataggagaca agcgaaatgc aaataggtgt
     2221 ataagccaaa tcattgaagg cattattgtc aataacagga ttagaaactc cgttcagaac
     2281 cacgccccag ttacagtttt tgaataaact gttttgaatg accggtgaag attgcaacaa
     2341 ctggatacct ctgtcgaaat ggttgaaaac acaatactta actgtgctca aatcgttgct
     2401 gatatcctgg aatgtcaatc cgtacgaact tctgtatggc agagttgtcg aaccgttgtt
     2461 attcgtatcg aacgggttgc catagctatc gtcatactca tgcgtgaaaa ccactggctc
     2521 caatgctgtt ccgtcgatgg ttattctacc cgaaacatca aataccgaga tacctctcga
     2581 tttgaataca actcccttag gtatggttat ttgagttcct gaatttacgg tcagcgtacc
     2641 gtaaacataa taggtcatat tggtatatcc cccaaaatcc cgttttggaa tggtggcatc
     2701 aaccgcatag ttttcaggaa caattc
//
LOCUS       DATDNM010000047         3722 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1287135, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000047 DATDNM010000000
VERSION     DATDNM010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3722
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1287135"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VI413_00820"
     CDS             complement(<1..228)
                     /locus_tag="VI413_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005678169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEY6913189.1"
                     /translation="MSIQQNVQSVRKHIPAHVQLVCVSKFNPNESILAAYETGERIFG
                     ESKVQELCGKYETLPQDICWHFIGHLQSNKIK"
     gene            complement(333..764)
                     /locus_tag="VI413_00825"
     CDS             complement(333..764)
                     /locus_tag="VI413_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4494 domain-containing protein"
                     /protein_id="HEY6913190.1"
                     /translation="MHNWFECKIKYEKTAEEGKIVKVNEAYLIDALSFTEAEARIIEE
                     MRPFISGEFTVANIRRAKINEMFFNENGDKWYRAKVMFVSLDEEKGVEKKTAVTMLVQ
                     ANDIKEALNGITEGMQGSMADYEIAAITETNIMDVYKYDAA"
     gene            complement(1010..3433)
                     /locus_tag="VI413_00830"
     CDS             complement(1010..3433)
                     /locus_tag="VI413_00830"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-translocating pyrophosphatase"
                     /protein_id="HEY6913191.1"
                     /translation="MKQFKRAGMLLLAALLTTANTFASEADIAIPDLHAGEFHIFGQV
                     IKAWDFLFYGALVICFTLSISLFFFSQIKKLRAHNSMLKVSETIYQTCRTYLLQQGKF
                     LLMLFAFVAVIMSYYFLVLQGKSVGTLLYVLFYSILGMGGSYAVAWYGIRINTYANSR
                     TAFASLRANPWDVVNIPLRAGMSVGLFLISLELVMMVIILLFVPREIVGICFLGFAIG
                     ESLGASVLRIAGGIFTKIADIGSDLMKVVFKVKEDDPRNPGVIADCTGDNAGDSVGPT
                     ADGFETYGVTGVALITFITLAVKDPDIQAKLIVWIFGMRFLMDLCSGISYFINQGIST
                     RKYKGLKMFNFEEPLMRLIWIAAILSISTSFFMSHLLVGDLADPTLWWKLAGIISCGT
                     LAAVLIPEFTKLFTSSHSAHVSEIVTASREGGPSLNILSGIVSGNFGAFWTGMLIVGL
                     MTAAYFISVFGHLELVLGPHATIFAFGLVAFGFLCMGPVTIAVDSYGPVTDNAQSIFE
                     LSQIESIDGIKEEIEKDFGFTPDFTVGKHYLEANDSAGNTFKATAKPVLIGTAVVGAT
                     TMIFSIILLLESVGMLSVSLTSAPILLGLICGGAVIFWFSGASMQAVTTGAYRAVEFI
                     KRTFNMENKEANIEDSKEVVKICTQYAQTGMWNIFIALISFTLGFAFFDSNFFVAYLI
                     SLACFGLFQAIYMANAGGSWDNAKKVIEVDLKEKNTPLHEAAVIGDTVGDPFKDTSSV
                     SLNPIIKFSTLFGLLATEIALKMKIDAAAGIGSDYSAFIGGGFLIIALIFVWRSFYKM
                     RIPLVDVKK"
BASE COUNT         1144 a          787 c          704 g         1087 t
ORIGIN      
        1 cttaatttta ttactttgaa gatgcccaat gaaatgccaa caaatatctt gtgggagggt
       61 ttcatatttg ccacataatt cctgaacttt gctttcgcca aaaattcttt cacctgtttc
      121 ataagctgct aatatagatt cgtttgggtt gaatttagac acacaaacca actgcacatg
      181 agctggaatg tgttttctta cagattgtac attttgttgg atcgacactt cttttagttt
      241 atagttctga gtttttagtt tttatagttc tgagtttaaa gtcctgagtc ttttttttat
      301 cataattatt tactcaatac tcaaaactat atttacgctg catcgtattt atatacatcc
      361 ataatattgg tttcggtaat ggcagcaatt tcataatcgg ccatagatcc ctgcatgcct
      421 tcggtaattc cgttcaatgc ctccttgata tcatttgcct gaactaacat ggttacggct
      481 gtttttttct ccactccttt ttcttcgtcc agagaaacaa acatcacttt ggcacggtac
      541 catttgtcgc cattttcgtt gaagaacatt tcattgattt ttgcccggcg gatattggct
      601 acggtaaatt ctccactaat aaaaggcctc atttcttcaa tgatacgtgc ttcagcttcg
      661 gtaaatgaca gtgcgtcgat cagataagcc tcgtttactt ttactatttt gccttcttca
      721 gcagttttct cgtatttaat tttgcattcg aaccagttgt gcatgagtct attattttaa
      781 aaatgaatgt tatacgtttt atttcttttg ttttttaatg aaacacaaag ataagaaatt
      841 ccttcaataa tcagattaga gttttatgtt tcgtgacatc tataatcggt gcttatactg
      901 aaaattgcat attacttaac ttgttcacga agtcctgaag ctcctctaaa caaaaacacc
      961 atataagccg gaagcctata tggtgtttaa tatcagcggt taaaccggtt tattttttca
     1021 catcaaccaa cgggatgcgc attttataga atgaacgcca tacgaatatt aatgcaataa
     1081 tcaaaaatcc acctccgata aaggcactgt aatcactgcc aattcccgca gcagcatcaa
     1141 ttttcatttt cagcgcaatt tctgtggcaa gcagcccaaa cagcgtagaa aacttgataa
     1201 ttggattcag cgataccgat gaagtatctt taaacggatc acccacggtg tcaccaatca
     1261 cagcagcttc gtgcaaaggt gtgtttttct cttttaaatc tacttcaatt acttttttgg
     1321 cattatccca cgagccaccg gcattagcca tgtaaatagc ctggaacaaa ccgaagcaag
     1381 cgagtgaaat caaataagcc acaaagaagt tactgtcgaa gaaagcaaag cccagtgtaa
     1441 atgaaatcag agcaataaag atgttccaca tacctgtttg ggcatattgg gtacaaattt
     1501 tcactacttc tttcgaatcc tcgatgttag cttctttatt ttccatgttg aatgtacgtt
     1561 tgataaactc aaccgcacga taagcacctg tagtaacagc ttgcatggaa gcgccgctaa
     1621 accagaaaat tacagctcca ccacaaatca gtcccaacag aataggggct gaagttagcg
     1681 aaacactcaa catgccgacg ctttccagca gcaggatgat agagaaaatc atggtggtag
     1741 ctcctactac tgctgttccg atcaataccg gtttggctgt agctttaaag gtgttaccgg
     1801 ccgagtcatt ggcttccaaa taatgtttac ccactgtaaa atcaggtgta aatccaaaat
     1861 ctttttcaat ttcttccttg ataccatcaa tgctttcaat ttgcgataat tcaaatattg
     1921 actgggcgtt gtctgttaca gggccgtagc tgtcaacagc aatagtcacc ggtcccatac
     1981 acaggaatcc gaaagccact aatccaaagg caaaaatggt agcgtgaggt ccaagaacta
     2041 attcgagatg tccgaatacg cttataaaat aagcagcagt cattaaacca acaatcagca
     2101 tgcccgtcca gaaagcaccg aagtttccgg atacgattcc cgaaaggata ttcagcgaag
     2161 ggcctccttc gcgcgaagca gtaacgattt cgctcacgtg ggctgaatga gaacttgtaa
     2221 atagtttcgt aaattcagga atcaatacag cagccagtgt gccacaactg ataatcccgg
     2281 ccagcttcca ccaaagtgtt ggatcggcaa gatcgccaac caataaatgg ctcataaaga
     2341 aagaggtaga gatactcagg atagctgcaa tccatatcag gcgcatcaat ggttcttcga
     2401 agttaaacat tttcaatcct ttgtatttac gtgttgaaat gccttggttg atgaaatacg
     2461 aaataccaga acacagatcc atcaggaaac gcataccgaa aatccaaaca atcagcttgg
     2521 cctgaatgtc cgggtctttt acggcaaggg tgataaaggt aatcaacgca actcccgtaa
     2581 caccgtacgt ttcgaatcca tcggcggtag gtccaacgct gtcaccggca ttgtcgcctg
     2641 tacaatcggc aataacgccc gggttgcgcg gatcatcttc ttttaccttg aaaaccactt
     2701 tcataaggtc ggaaccgata tctgcaattt tggtaaagat accaccggca atacgaagta
     2761 cgctggcgcc caacgattca ccgatagcaa agccgaggaa gcagattcct acaatttcgc
     2821 ggggaacgaa cagcaggatg ataaccatca tgactaattc cagcgagata aggaaaaggc
     2881 ccacgctcat tccggcgcgt aacggaatgt ttaccacgtc ccacggattg gcacgaagcg
     2941 atgcaaaagc ggtgcgtgag ttggcgtagg tgttgatacg gataccgtac caggccactg
     3001 catacgaacc gcccatacct aaaatagagt aaaaaagtac atataataat gtaccaaccg
     3061 atttaccctg aagtaccaga aaatagtacg acatgatgac agccacaaac gcaaaaagca
     3121 tcaataggaa ttttccctgc tgtagcaaat acgtgcggca agtttggtaa atggtttccg
     3181 aaactttcag catcgaatta tgtgcccgga gtttcttgat ttgggaaaag aaaaataaac
     3241 tgatactaag cgtaaagcag ataactaatg ctccgtagaa caaaaaatcc catgctttaa
     3301 tcacctggcc gaaaatgtgg aactctccgg catgtaaatc cggaattgcg atgtctgcct
     3361 cgctggcaaa ggtgttggct gttgtgagta acgctgctaa aagcaacatt ccagcccgtt
     3421 tgaactgttt cataactact actattgatt ttaaggtgtg agaatttaac agaattttaa
     3481 aataaaaaaa aattctctca aagttaggaa atattaaata gttttgcaat tattttttta
     3541 taaagttttc aacaattttt atcttttagg cgtgatgaaa tcgacaatta tatagtaaat
     3601 acacctgttt ttggattagt atttcaatat tttatctttt ttgcttttaa attggaattt
     3661 gcacccattc gcagggaata aaaacggtat aaattcagta atcaatagtg ttgttgaaat
     3721 tt
//
LOCUS       DATDNM010000048         2068 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_325590, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000048 DATDNM010000000
VERSION     DATDNM010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2068
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325590"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1997)
                     /locus_tag="VI413_00835"
     CDS             complement(<1..1997)
                     /locus_tag="VI413_00835"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF014499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEY6913192.1"
                     /translation="MLLSHDNLVENIKSPTKCTHIFKVKMPLLKNNETICLIGDCDAL
                     GNWSTNDPILLNGADNNWWRVEVDLSKAQNEVHYKYGIYNRENKQFRYFESGPDHIVP
                     VIKSKKTLVQKTDGFVRVSNNSWKGAGVGLPVFSIRTKKSFGVGDFADIKLLVDWAEK
                     VGLKLIQVLPLNDTIGTHTDADVLPYAAISAFALNPLFLNLPAMGKLPATHPLQKEYK
                     AKQAELNASDLVPFMDVINFKLQYSKELYLEQKEIFLRNNDFKKFFADNEYWLAPYAA
                     YCVLRDMFKTSDYRQWKEYAIYDAVKMADFNSPNQAHFDDIAVNYFIQYHLHVQLMET
                     AKYAHEHNVVLKGDIPIGVNRNSVDTWVSPELFHMHMQAGAPPDMFSVKGQNWELPTY
                     NWEVMEETNFDWWKKRFGQMSNYFDTFRIDHILGFFRIWQIPANQVEGIMGHLNPSTP
                     IHINEFAEKGLWFDYNRFCKPYITDSILWDFFGEEASWVKANCLQIEDGWILRLKTSY
                     QSQLTVEKMFEEGKISERIKSGLFDLISNVLFFEKEGSNATQFYPRFGIESLRTYSDL
                     DNYTKERLHELYVDYFYRRQDANWYHSGMEKLPALKRATNMLICGEDLGMMTPCVTAV
                     MKELGILSLEVQRAPKSNKREFFHPSKAPYLSVVTPSTHDM"
BASE COUNT          651 a          440 c          349 g          628 t
ORIGIN      
        1 ctcatgtcgt gcgtagaagg cgttaccaca gatagataag gagcttttga aggatggaaa
       61 aattcacgtt tattcgattt gggagcacgt tgaacttcca ggctcagaat acccagctct
      121 ttcatgactg cagttacaca aggcgtcatc ataccaaggt cttcaccaca aataagcata
      181 ttggtagcac gcttcaaggc tggcagtttt tccattcctg agtgatacca gttggcatcc
      241 tgacgacgat aaaaataatc cacatataat tcatgtaagc gctcttttgt gtaattatcc
      301 agatcgctat aagtgcgaag agattctata ccgaagcgcg gataaaactg cgtcgcattg
      361 ctaccctctt tttcaaaaaa tagcacattg gaaatcaaat caaaaaggcc tgattttatt
      421 cgttcggaaa ttttcccttc ttcaaacatt ttctctacag ttaactgact ctgataagag
      481 gttttcagcc gcaaaatcca accatcttca atttgcaaac agttcgcttt tacccacgaa
      541 gcctcttcgc caaagaaatc ccacaatatt gaatcagtaa tatatggctt gcaaaaacga
      601 ttataatcaa accacaatcc cttttcagca aactcgttga tatgaattgg agtggaagga
      661 ttcaaatgtc ccataatacc ttcgacctga tttgctggga tttgccagat acggaaaaat
      721 cctaagatat gatcgattcg gaacgtgtcg aaataattag acatttgacc aaatcgtttt
      781 ttccaccaat caaaatttgt ttcttccata acctcccagt tataagttgg caattcccaa
      841 ttctgacctt ttacagagaa catatcgggt ggtgctcctg cctgcatgtg catatggaaa
      901 agctcgggcg aaacccaggt gtcaacgctg ttccggttta caccaattgg aatatctccc
      961 tttaatacca cgttatgctc atgtgcatat ttcgctgttt ccataagttg cacatgtaaa
     1021 tggtattgaa taaagtaatt cactgcaata tcatcaaaat gagcctggtt tggcgaatta
     1081 aaatcagcca ttttcacagc atcataaata gcatactctt tccactggcg ataatctgat
     1141 gttttaaaca tatcacgtag tacgcaatag gctgcataag gagccagcca gtattcattg
     1201 tctgcaaaga attttttaaa atcattgttt ctaagaaata tctctttctg ttccagatac
     1261 aactctttgg aatactgaag cttgaaatta atcacatcca taaaaggcac caaatcagaa
     1321 gcattcaatt cagcctgctt agctttatat tctttttgca agggatgagt agcaggtaat
     1381 ttacccatag caggtaaatt aagaaaaagc ggattaagag caaaagcgga aatcgctgcg
     1441 taaggaagta catcagcatc agtatgagtt ccaatagtat cattcaacgg caaaacctga
     1501 atcaatttta gtccgacctt ttcagcccag tctaccaata attttatatc agcaaaatcg
     1561 ccaacaccaa aacttttctt ggtgcgaata ctgaaaaccg gcaatccaac acctgcacct
     1621 ttccatgaat tatttgaaac gcggacaaaa ccgtcagttt tttgaaccaa cgttttcttt
     1681 gattttataa caggaacaat atgatcgggt cccgattcaa aatacctgaa ttgcttattt
     1741 tcccgattgt aaattccata tttgtaatgt acttcgtttt gtgctttact taaatccact
     1801 tccactctcc accaattatt atctgcgccg ttcaaaagga tgggatcgtt tgtcgaccag
     1861 tttcctaaag catcgcagtc acctatcaaa caaatggttt cgttgttttt caacaaaggc
     1921 attttcactt taaatatgtg tgtacatttt gttggagatt taatattttc aactaaatta
     1981 tcgtgactta acaacacttt ttgaaaaggt gccgtaagga aaacattatc tatactacct
     2041 tttgaattcc aaagatcaat acagaaaa
//
LOCUS       DATDNM010000049         2009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_753155, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000049 DATDNM010000000
VERSION     DATDNM010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_753155"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..472
                     /locus_tag="VI413_00840"
     CDS             <1..472
                     /locus_tag="VI413_00840"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913193.1"
                     /translation="IKLIGNEHKIGARTGSYSNMPVNRNFKIVWVAENYGVGANSPVV
                     CDTTVQYTGSQVVIPYLPTGLIKVTGNNDNFKVSVNNADKTVKINFVSSRRGNAEISC
                     VDLGGKCLLKKNIEVENGENKYVINMRKYGVGTGVYIVSLKNGNELFTNKLTLQ"
     gene            complement(564..1604)
                     /locus_tag="VI413_00845"
     CDS             complement(564..1604)
                     /locus_tag="VI413_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018107982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6913194.1"
                     /translation="MKKIVILFIATFCVLLVGFGQKKVKKSGGKIIASGAEWYDTSGK
                     RINAHGGGLLYHKGVYYWYGEYKGDSTYWNPKVPKWECYRTEAGGVSCYSSRNLIDWK
                     FEGIVLPSEQKNTASELHFSNVLERPKVIYNEQTKKFVMWLHVDSHDYAKAAAGVAVC
                     DSPVGIFKYLGSVRPNGQMSRDMTVFKDDNGKAYQVCSSESNSTLYINELTNDYLKPS
                     GRFTRNFIKEFREAPAVFKHNGKYYILTSGCSGWDPNQAKYAVADSMLGHWEMHENPC
                     RGTNADKTFYGQSTHVLPIEGKQNAYIAMFDQWNKKDLINSRYIWLPVIFKGESIEIP
                     WMDKWEINKVFK"
BASE COUNT          611 a          416 c          353 g          629 t
ORIGIN      
        1 aatcaaactc attggcaatg aacataaaat tggtgcccgc acaggaagct acagcaacat
       61 gcctgtaaac cgcaatttca agattgtatg ggtagccgaa aactatggag taggtgccaa
      121 tagtcctgtt gtttgtgaca caacggttca gtatacaggc agtcaggttg taatacctta
      181 tttgcctacg ggattaatta aagtgactgg caataatgac aacttcaagg tgagtgtaaa
      241 caatgctgac aaaacggtga aaatcaattt cgtttcaagc cggagaggca atgccgaaat
      301 ttcttgcgtt gatttaggtg gtaaatgctt gttgaagaag aacattgaag tagaaaacgg
      361 agaaaacaag tatgttatca atatgcgcaa atatggagtt ggaacaggag tttacattgt
      421 ttcgcttaaa aatggcaatg agctgtttac caacaaattg acactacaat aggtttcttc
      481 agcatacgat cttcattgta aagatgctta aaaaaagaaa gcaggatttg tatgaatcct
      541 gctttctttc gtcttataat caatcattta aaaactttgt ttatttccca tttatccatc
      601 catggaattt cgatggattc tcctttaaaa atcaccggaa gccaaatgta acgcgagttt
      661 atcagatcct ttttattcca ttggtcaaac atggcgatat acgcattctg tttcccctct
      721 ataggtaata catgcgtgct ttgtccgtaa aacgttttat ctgcattcgt gcctctacaa
      781 ggattttcat gcatttccca atgtccaagc atcgaatcgg ccacagcgta ttttgcctga
      841 tttggatccc agccggaaca acctgacgtt aaaatataat atttcccatt gtgtttaaaa
      901 actgcaggtg cttccctgaa ttctttaata aaatttcggg taaaacgtcc cgacggtttt
      961 agataatcgt tggtcaattc attgatatac aaagtagagt tgctctctga tgaacatacc
     1021 tgataagcct taccattgtc atctttaaaa accgtcatat cgcgactcat ttgcccgtta
     1081 gggcgtacag aaccaagata tttgaatatc ccaacaggcg aatcgcatac tgccacacct
     1141 gcagctgctt ttgcataatc atgactatca acatgtaacc acatcacaaa tttctttgtt
     1201 tgttcgttat aaattacctt aggacgctcc aatacgttgg aaaaatgcaa ttcagaggca
     1261 gtgttcttct gttcagatgg caatacaatt ccctcaaact tccagtcgat taaatttcgc
     1321 gatgaataac acgaaacacc accggcttca gttcgatagc attcccattt cggcactttg
     1381 ggattccaat aagtggaatc gcccttgtat tcgccatacc agtaatacac acctttgtga
     1441 taaagtaagc caccgccatg ggcattaatc ctcttgccgg aggtatcata ccattcagct
     1501 ccagaagcga ttatttttcc acctgatttt tttacttttt tttgaccaaa gccaactaac
     1561 aacacacaaa atgttgcaat aaagagaata acaatttttt tcattaattt ctattttaag
     1621 ggcaaataca gtttatggtt tattgcctac cttttattat ctgttgaata ttcaatttta
     1681 tgattatccg cataatgtac aacgagagct aaacgagggt gtccaatacg tattttttga
     1741 acgcaaatta cgcaaatagc accgctcggc tcggccgctt ggcttgccaa gaaattttag
     1801 ctacgctgac cgttggttcg caaatctcat ttttataaat acaaatatat cagcaattta
     1861 tattttgtgt cgatttgcga tttttgcgta atttgcgttc tttttccttt ttatacaccc
     1921 tcataacccc acatactttt ttgccttgat gcaaaaaagt atgcaaaaaa aatcaagact
     1981 gcgcccgctt agctcaaaaa actatcgct
//
LOCUS       DATDNM010000050         2476 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_219264, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000050 DATDNM010000000
VERSION     DATDNM010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219264"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..194)
                     /locus_tag="VI413_00850"
     CDS             complement(<1..194)
                     /locus_tag="VI413_00850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913195.1"
                     /translation="MKTETVLFRLKTLDKLCLLALLLITSSTISAQDITSGLKLHYKF
                     ETVATIPDNSGSNQKGIKNGS"
     gene            complement(508..>2476)
                     /locus_tag="VI413_00855"
     CDS             complement(508..>2476)
                     /locus_tag="VI413_00855"
                     /inference="COORDINATES: protein motif:HMM:NF019556.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-L-arabinofuranosidase domain-containing
                     protein"
                     /protein_id="HEY6913196.1"
                     /translation="EIFADAYQMTGTAKYLTAAKRFSHKVLLNSMAVNSDNLDNMHAN
                     TQVPKAVGFQRIAEVSKDATYIKAAQFFWQTVTANRSLASGANSRKEYFPQATAYSDY
                     VNVPEGPESCNTNNMLKMTEDLFRVSPQAKYADYFERALYNHILSTQHPDHGGYVYFT
                     PARPRHYRVYSAPNQAMWCCVGTGMENHGKYGEFIYTHQNDSLYLNLFIASELNWKDK
                     GVKIRQETKFPEEEKTKLIVSVTTPTAFKLMVRSPKWVKAGMLKIVVNTDTLAVQSVP
                     QTYIAINRTWNNGDSVRILLPMENTIEQLPNVTSYVALLHGPILLGAKTGTEDLLGLV
                     ADDSRWGHIANGTLLPLDKAPVIVSDKASIASKITPVAGKPLTFTAPALFVTKADSAL
                     VLEPFYKIHDSRYMMYWMALSKAQYQTVVDSLAAVQKAALELELRTVDKVAPGEQQPE
                     VDHKLLSLNSYTGNYQNEFWRDARAGGYISYSMLTGKKSDLSLMVRYWGNETGSRSFD
                     ILIDGVKLTTENIVGKWNVNQFKNVEYPIPNSMTSGKDTITVKFQAINTSNVVGGLFY
                     VRLLQPLSATDVQPVYNRSDWKVFTRKNNIVVNGLAGPSTIFVYDSCGHTLNIEKSKA
                     SSVIIPAKSKGIRIVKVVSGGNVQVNKVIVE"
BASE COUNT          663 a          557 c          515 g          741 t
ORIGIN      
        1 gatccgtttt ttataccttt ttggttgctc cctgagttat cgggaatggt tgcaacagtc
       61 tcaaacttgt aatgcagttt taacccgctt gttatgtcct gtgcagaaat ggttgacgaa
      121 gttatcagta gcaatgctaa gagacaaagc ttatccaaag tcttcagtct aaataaaact
      181 gtttcggttt tcatccgtaa ataattggtt tatatgtttt gaacggaaat tactcaacaa
      241 taagttttac attatcgctt tcattcccac tatttttgtg gtcctgcaaa tagctgcagg
      301 aataagtagc acaaaaatag aaaaaccaca ttatgaataa acgctggaat tagtcataaa
      361 cagtctataa ttaatcaatg tgggagcttg tttgtcttgc attgtctgta aaatggcaaa
      421 atacacactc ttataaaaca aacaaccctc cattgtgaat tgtggaaggc tatttgtttt
      481 tgggtatgct gttacaaata cgattcccta ttcaacaatc actttgttta cctggacatt
      541 cccacccgaa accactttca cgatccggat tcctttagac tttgcaggaa tgataactga
      601 gcttgccttt gatttttcga tgttcagtgt atgcccgcag gaatcgtaaa caaatatagt
      661 tgaaggtccg gcaaggccat tgacaacaat attattttta cgtgtaaaca ctttccagtc
      721 ggaccggtta tacaccggtt gtacgtcagt ggcactcaat ggctgtaaaa gccgcacata
      781 aaacaaccct cccacaacgt tactggtatt gattgcctgg aatttcacag taatagtatc
      841 ttttccgctt gtcatcgaat tcggaatcgg atattccaca tttttaaact gatttacatt
      901 ccatttccct acaatgtttt cggtagtcag tttcactcca tcaatcagaa tatcgaacga
      961 gcggcttcct gtttcatttc cccaatagcg caccataagc gacaaatctg attttttacc
     1021 ggtcagcatg ctgtagctga tatatcctcc ggcacgggca tcgcgccaaa actcattctg
     1081 ataatttccg gtataagaat ttaaactcag cagtttatga tccacttcag gttgttgctc
     1141 acccggagcc actttatcca ccgtgcgaag ttcaagttcc agtgctgctt tttgcacagc
     1201 ggccagacta tccactacag tttgatactg agcctttgac aacgccatcc agtacatcat
     1261 gtaacgcgaa tcgtgtatct tgtagaatgg ttctaacacc agtgcagaat cggctttggt
     1321 tacgaaaaga gccggagctg taaaggtaag tggtttgcct gcaacgggcg ttattttcga
     1381 agcaatggaa gctttatcgc ttacaataac cggtgctttg tccagcggca acaacgttcc
     1441 gttggcaatg tgtccccagc ggctatcgtc ggcaaccagt cccaacaaat cttcggtacc
     1501 cgtcttggct ccaagcagaa taggtccatg cagcaaagca acatacgaag ttacatttgg
     1561 caactgctct attgtatttt ccattggcaa caagatgcga actgaatcgc cgttgttcca
     1621 ggtacggttg atggctatgt aggtttgcgg aactgactga acagccaacg tatcggtgtt
     1681 caccacaatt ttcaacatgc ctgcttttac ccattttggt gaacgaacca tcagtttaaa
     1741 agcggtagga gtagttacgc tgacaatcag ttttgttttt tcctcttccg gaaacttagt
     1801 ttcctggcgg atttttacac ctttatcttt ccagttgagt tccgaagcta taaacagatt
     1861 caggtacagg gaatcgtttt ggtgggtata aatgaactca ccgtatttcc catgattttc
     1921 cataccggtt cccacacaac accacatggc ctgattggga gctgaatata cacggtaatg
     1981 gcgcggacgg gccggtgtga aatacacgta tcccccatga tccgggtgtt gggtggacaa
     2041 gatatgattg tacaatgccc gctcaaaata atcggcatat ttggcctgcg gactgacacg
     2101 gaacaaatcc tccgtcattt tcagcatatt gttggtgtta caggattcag gtccttcagg
     2161 aacatttaca tagtcgctgt aggcggtagc ttgcggaaaa tactccttgc ggctgtttgc
     2221 ccccgaagcc aggctcctgt tagcagtaac agtttgccag aagaactgtg cagctttaat
     2281 gtatgtagca tctttggaaa cttcagctat tcgttggaaa ccaactgctt tcggcacctg
     2341 ggtattggca tgcatattat ccaggttgtc agaatttaca gccatactgt tcagcaatac
     2401 tttgtgcgag aaacgtttgg cggcagtcag atacttcgct gtaccggtca tttgataggc
     2461 atcggcaaaa atctca
//
LOCUS       DATDNM010000051         3448 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1287592, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000051 DATDNM010000000
VERSION     DATDNM010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3448
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1287592"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..1434
                     /locus_tag="VI413_00860"
     CDS             289..1434
                     /locus_tag="VI413_00860"
                     /inference="COORDINATES: protein motif:HMM:NF012500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913197.1"
                     /translation="MVLPQNILTYITENIKEGFDPFYLYDSLQIKDKCQLFQHISYQN
                     KAIHFASMANINLRFLETVKEEKMSIFVNSPLHLEAAYKAGFRHKEIIFTSSALSEKM
                     MNLIKSYDVQVNLDSPNQLALWWKLFPGQAVGIRCNIGDNVKPYSTHAGAFIGKESRL
                     GFTVDEIAQIPDKSLIKGVHLYVGTDIFDVSYFIACYKELIRISDDFPNLEYLNFGGG
                     FGMAENGENKFDMEEYNVQVTRLMNEASARKGKSIKLILEPGRIIGGNAGYFVCSVTD
                     IKIRPNRNLVGLNASTVQFSRPLLYPEIANHPVAVIRNGVQLFSDENYPTTIYGCSTY
                     SRDIFSNKAFLPELQIGDVVVFGNAGSYCASSYMQFLGFPKPEEYFI"
     gene            1431..2519
                     /locus_tag="VI413_00865"
     CDS             1431..2519
                     /locus_tag="VI413_00865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913198.1"
                     /translation="MIAEQLEGKSAHKVFAKVAADVYRNNRYFRGTDASVESLVLSSG
                     STFSNHATVKLFVVRDGNNLVARFALIHDQWLPDYVQVAYFEAQKGLGDIFSIIKKEI
                     YKHFTRCHKVVVGLNGHLNYGAGILMNRFDETPVFGLPYQPDYYVGYFNELHCRKMAT
                     FRLTVEAYAAWAASYSVQKEIEGLHIRFMDKQQIKAESAIYTSLNNQAFTNHPYWAKR
                     DKEEDLELFYPFRFLLDNENLIFAEINGKPVGFFLWYPDFNQLVSTQRDLNVFDVLKY
                     RLGKIPDTMRFTEIGIIPEYQRSPVALALINKSLPALHEKGFKYCEGGFIFEENQASM
                     ALVKRMLQRCYGVEPEIYRQYATFETTL"
     gene            2519..>3448
                     /locus_tag="VI413_00870"
     CDS             2519..>3448
                     /locus_tag="VI413_00870"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6913199.1"
                     /translation="MIEFKRIEITNGLPQVWDKMAKSYFQKKKFLAHAEKYNPCEQRY
                     YMCLEDGEAVAAAIVYSLRLDILTFLKVKSPLKMNIMGIPCSVSSPGIFGKKAFVEAL
                     KTYIYQQEKGFLLVLNLTEKPKGIAYASGHTLPTIVLSNKYADWNDYAASLRTGYRRR
                     LKQINKENPDLRFEKKTCSAFTREMYNQYLEVYERSNGKLEKLTFDFFRNLPPEFILT
                     VCYENEHVIGWNLAINHGNMYYFFLGGIDYSRNRIHNTYLRLLSGLIHDGIDQNADFI
                     ELGQTAEIAKMRMGGKPETLYMEAHHSNGLINKL"
BASE COUNT         1047 a          627 c          752 g         1022 t
ORIGIN      
        1 aaggatgaaa aactggtaaa atcgcttgac agattacgat aaatcgaaat ttgagtatat
       61 tttgcaaacg ccttggtcta cggactaagg cgttttttgt tttaatcgat tgttggattt
      121 atttgacata aatgtaaaaa attataaaat aattaatata tttgtggata ttaaaatttg
      181 caatttcagg ctgcttgact gatgaagcta tgttttcaga attaaaatat ggcaagcgat
      241 taaaatacaa taccttagtt aatacaacat aatgataaaa cacgcgatat ggtattacca
      301 caaaatatac taacctatat aactgaaaat atcaaagaag gttttgatcc tttctatctt
      361 tacgatagcc tacaaataaa ggataaatgc caactttttc agcatatttc ctaccagaat
      421 aaagccattc attttgcttc catggctaac atcaatcttc ggtttttaga aactgtaaaa
      481 gaagagaaga tgagtatttt tgttaattcg cccttgcatt tggaagcggc ttataaggct
      541 ggattcaggc ataaagaaat aatctttacg tcgtctgcgt tgtcggaaaa aatgatgaac
      601 cttattaaaa gttatgatgt tcaggtgaat ctggattctc cgaaccaact ggctttgtgg
      661 tggaaacttt tcccgggcca ggcggttggg atacgctgta acattggcga taacgtaaag
      721 ccgtactcca cacatgccgg tgcatttata ggcaaagaaa gccggttggg ttttaccgtc
      781 gatgaaattg ctcagatacc ggacaagtca ttgattaaag gagtgcattt atatgtaggt
      841 acagatattt ttgatgtcag ttattttatt gcttgttaca aagaactgat tcgtatttcg
      901 gatgattttc caaacctgga atacctgaat ttcggaggcg gtttcgggat ggctgaaaac
      961 ggggaaaata agtttgacat ggaagaatat aacgttcagg taaccagact tatgaatgaa
     1021 gcttcggccc ggaaaggaaa aagtataaaa ctgatccttg aacccgggcg gattatcggg
     1081 ggcaatgccg gctactttgt ttgcagtgtt accgatatta aaatccgtcc caacagaaat
     1141 ctggtcggac tgaatgcttc caccgttcag ttttccaggc cgttgcttta tccggaaata
     1201 gcaaatcacc ccgtggctgt aatccgaaac ggagttcagt tattttccga tgaaaactac
     1261 ccgacaacca tttatggctg ttccacttat tcgcgcgata ttttttccaa caaagccttt
     1321 ttgcctgagt tgcaaattgg cgatgtcgtt gtctttggca atgcaggttc ttattgcgca
     1381 tcatcctaca tgcagtttct tggtttcccg aaacctgaag agtattttat atgatagcag
     1441 aacaacttga aggaaaatcg gcgcataaag tattcgcaaa agtagcagcg gatgtgtatc
     1501 ggaacaatcg gtatttccgt ggaacggatg ccagtgtgga aagtctggtt ttgagttccg
     1561 gcagtacttt cagcaatcat gccacagtca aattgtttgt ggtacgagac ggtaacaatc
     1621 tcgttgcacg ttttgccctg attcatgacc agtggttacc cgattatgtt caggtggcat
     1681 attttgaagc gcaaaagggg cttggagata ttttttcgat tataaaaaag gaaatttaca
     1741 aacatttcac ccgctgccat aaagtggtgg tggggctaaa cggacatttg aactacggag
     1801 ccggtattct gatgaaccgg tttgatgaaa caccagtatt tggattgcct tatcaaccag
     1861 attattatgt cggttatttc aatgagctgc attgccgcaa aatggcaacc ttcaggctta
     1921 cagtagaggc ttatgctgct tgggcagcct cttattctgt tcaaaaggaa atagaagggc
     1981 ttcatatccg attcatggat aaacagcaaa tcaaggccga aagcgctatt tatacctcac
     2041 taaataacca ggcatttacg aaccatccgt attgggcaaa acgcgataaa gaagaagatc
     2101 tggaactatt ttatccattc cgttttctgc tggataatga aaacctgata tttgccgaaa
     2161 taaacggcaa gccggttggt tttttcctgt ggtatccgga tttcaaccaa cttgtttcca
     2221 cgcaacgcga tctgaatgtt tttgatgttt tgaaataccg acttggtaaa atacctgaca
     2281 ctatgcgctt tacggaaatt ggtatcattc ctgaatatca gcgcagtccg gttgcattgg
     2341 cattgattaa taaatcgctt ccggcacttc atgaaaaagg atttaaatac tgcgaaggag
     2401 gatttatttt tgaagaaaac caggcttcca tggcattggt gaaacggatg ttgcaacgtt
     2461 gctatggggt ggagccggag atttatcgtc agtatgccac ttttgaaacg acactttgat
     2521 gatagaattc aagcgcatag aaataaccaa cgggcttcct caagtctggg acaaaatggc
     2581 caaaagctat tttcaaaaga agaaattttt agcgcatgct gaaaagtaca atccctgcga
     2641 gcaacggtat tatatgtgtt tggaagatgg agaggctgtt gcagctgcaa ttgtatattc
     2701 tctgagactc gatattctta cttttttaaa ggtcaagagt ccgctgaaaa tgaatatcat
     2761 gggcattcca tgttcggtgt ccagcccggg tatttttggg aaaaaagctt tcgttgaagc
     2821 attgaaaacc tatatttacc aacaggaaaa aggctttttg ctggttttga acctgactga
     2881 aaagcccaaa ggtattgctt atgcttccgg gcatacgttg ccaaccattg ttctatcaaa
     2941 caaatatgct gactggaacg attatgctgc ctcacttcgt accggttatc ggcgacggct
     3001 taaacaaatc aataaagaga atccggattt gaggtttgag aaaaaaacat gttctgcctt
     3061 tacccgggaa atgtacaatc aatatctgga agtgtacgaa agaagcaacg gaaaacttga
     3121 aaaacttact ttcgattttt tcaggaatct gcctccggaa tttatcctga cagtttgtta
     3181 tgaaaatgaa catgttatag gttggaatct ggctatcaat catggaaata tgtactattt
     3241 ctttttgggt ggaatagatt atagtcgtaa ccggattcac aatacctatt taaggctgtt
     3301 gtccgggcta attcatgatg gaattgatca aaatgctgat tttatagagc tgggacaaac
     3361 ggccgaaatc gccaaaatgc gcatgggggg caaaccggaa acactttata tggaagcgca
     3421 tcacagcaac ggattgataa ataaattg
//
LOCUS       DATDNM010000052         2609 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_5891, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000052 DATDNM010000000
VERSION     DATDNM010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2609
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5891"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..1315)
                     /gene="serB"
                     /locus_tag="VI413_00875"
     CDS             complement(89..1315)
                     /gene="serB"
                     /locus_tag="VI413_00875"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010538058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEY6913200.1"
                     /translation="MMPNSELILIKISGEDKPGVTAAITEILGNYNATILDIGQADIH
                     HTLSLGILFKVNNQNDSGNILKEVLFKCSELNVNVRFTPVTPDRYTNWVGRQGKSRYI
                     VTILGKVITARQLAMVAKAISEQNLNIDSIIRLTGRPSLEINDDNDTRSCVEFSVRGE
                     LIDKNILSSQFMQYSAELGIDISFQKDDMFRRNRRLICFDMDSTLIKTEVIDELADRA
                     GVGEQVRAITESAMRGEIDFSESFKQRVALLKGLDESVMKDIADNLPIMEGADRLISI
                     LKKIGFKVAILSGGFTYFGNALKKRFDVDYVYANELEIVDGKLTGNHVGDIVDGKRKA
                     ELLRLIAQVEKIELEQVIAVGDGANDLPMLNLAGLGIAFHAKPKVKEEAQQSLSTIGL
                     DGVLYFLGFRDIHIDN"
     gene            complement(1432..>2609)
                     /locus_tag="VI413_00880"
     CDS             complement(1432..>2609)
                     /locus_tag="VI413_00880"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEY6913201.1"
                     /translation="YEMVGNLAKHLHLNLKISIAKTETEMYQWLAERKVDIISYNIIE
                     TKGLKKQFSFVLPQPESYQVLVQNMGANSVSDVTELNGESIYVKENSIFHQRLKALND
                     EIGGTINIVLAPDSLSDDDLIDMVAENKIKFTLAYHNVAILHKSYYRGLDCRMPVGFT
                     QRNGWLVRNESQNLKNAIENWEKLDDTRQIQWDLFRKYWEKSPFFALRRVTIPKGAIS
                     PFDHLFRKYAPNIGWDWRLLASVAFHESRFDSQEISWAGAAGLMQLMPRTASNFGLNR
                     RTILDPEMNIEAGVQYIKSLNMSFRKISNKEERIKFILAAYNSGPAHILDAMALAQKY
                     GKNPHVWFNHVEYFLQKKNEPEFYNDPVVKYGRFGGKETVRYVKNTLETYSKYCKKK"
BASE COUNT          679 a          554 c          516 g          860 t
ORIGIN      
        1 ccaaccattc cggttccgcc tataacaatt gctttcttca tattttttct tttgccttac
       61 tgcttgcctt ttagtgcttg ctgctttttt agttatcaat atgtatatcc ctgaatccca
      121 ggaagtacaa tacaccgtca aggccaatgg tagataggga ttgttgggcc tcttccttta
      181 cttttggttt agcgtggaac gcaattccga gtccggctaa gttcagcatt ggcaaatcat
      241 tggctccatc gcctactgca ataacctgtt caagctctat tttttctact tgtgcaatca
      301 gcctcaataa ttcagctttt cgttttccat caacgatatc gcctacatga tttccggtaa
      361 gttttccgtc aacaatttcc agttcatttg catacacata atcaacatca aagcgttttt
      421 tgagtgcatt tccaaaatag gtaaatcctc cggaaagaat ggccacttta aaaccgattt
      481 ttttcagaat ggaaatcaac ctgtcagcac cttccataat gggcagattg tcagcaatat
      541 ctttcattac gctttcatcc aatcccttca ataaagcaac gcgttgtttg aagctttcgc
      601 tgaaatcaat ttcaccccgc atggccgatt cggtaatggc acggacctgt tcacccactc
      661 cggcacgatc ggccagttcg tcaataactt ctgtttttat aagggttgaa tccatatcaa
      721 aacaaataag ccggcggtta cggcggaaca tatcgtcttt ctggaatgaa atatctatac
      781 ccagttcggc agagtattgc atgaattgcg acgagagaat gtttttgtca atcagctcac
      841 cacgcactga gaattcaaca catgagcggg tatcgttgtc atcattgatc tccagcgatg
      901 gccggcctgt gaggcgaata atggaatcga tgttgagatt ttgttcggaa atggcttttg
      961 ctaccatagc cagttgacgg gctgtaatta cttttcccag aatggtgaca atatatctgc
     1021 tcttgccctg ccggccaacc cagttggtgt atctgtcggg ggttacgggc gtaaaccgta
     1081 catttacatt gagttcggaa catttgaaaa gtacttcttt cagaatattt ccggaatcat
     1141 tttgattgtt gactttgaaa agaattccca gtgaaagcgt atgatggata tcagcctgtc
     1201 cgatatcaag tatggttgca ttataatttc caagaatttc tgtaattgct gcggtaactc
     1261 cgggcttatc ttcgccggat attttgataa gaattaattc gctgtttggc ataatttaat
     1321 ttgcaatgga agtttgtaag ttttgtactc ttgaaaaaca aaagtatagg tttaatttta
     1381 aaatactatt tcagtaatag taaatagttg ttagttaaat actcaatgga tttatttttt
     1441 cttgcagtat ttggaatagg tttccaacgt atttttcaca tatctgactg tctctttgcc
     1501 accaaaccgg ccatatttta ccacggggtc gttataaaat tcaggttcgt tctttttctg
     1561 taagaaatat tcaacgtggt taaaccatac atgtggattc ttaccatatt tttgcgctaa
     1621 agccatagca tccagtatgt gtgccggacc agaattgtag gctgcaagaa taaatttaat
     1681 ccgttcctct ttattcgaaa tctttctgaa tgacatgttt aaactcttga tgtattgtac
     1741 tcctgcttcg atattcattt ccgggtcgag gattgtgcgt ctgtttaacc caaaattaga
     1801 agctgtgcgt ggcattaatt gcatcaaacc ggctgcgcca gcccacgata tttcctggga
     1861 gtcgaagcgg gattcatgaa aggcaacgga agccagcaag cgccagtccc aaccaatatt
     1921 cggtgcatat ttccggaata aatgatcgaa tggagaaatg gcacctttgg ggattgttac
     1981 ccggcgcaat gcaaaaaacg gacttttttc ccagtatttt ctgaaaaggt cccattgaat
     2041 ttgccgggta tcatccagtt tctcccaatt ctctattgca ttttttaagt tctggctctc
     2101 attccgtacg agccaaccgt tccgttgggt gaatcccacg ggcatacggc aatccagtcc
     2161 gcgataatat gatttatgaa ggatagcaac gttgtggtag gctagtgtaa actttatttt
     2221 attttcggcc accatgtcaa tcaggtcatc gtctgatagt gagtcgggag ctagtacaat
     2281 atttatagta cctccgattt catcattcag ggctttcagt cgttgatgaa aaatgctgtt
     2341 ttcttttaca taaatgcttt ctccatttag ctccgtaaca tccgaaactg aatttgctcc
     2401 catgttttgc accaaaacct gataagattc gggttgcgga agtacgaaac tgaattgctt
     2461 tttcagccct ttagtttcaa tgatgttgta gctgataata tctactttgc gctcagcaag
     2521 ccactggtac atttcagtct ctgtctttgc aatgcttatt ttgagattca gatgcaggtg
     2581 ttttgccaga tttccaacca tttcgtagt
//
LOCUS       DATDNM010000053         4722 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1928338, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000053 DATDNM010000000
VERSION     DATDNM010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4722
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1928338"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..177
                     /locus_tag="VI413_00885"
     CDS             22..177
                     /locus_tag="VI413_00885"
                     /inference="COORDINATES: protein motif:HMM:NF014825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SEC-C metal-binding domain-containing protein"
                     /protein_id="HEY6913202.1"
                     /translation="MNKPDRQVKVFAGNGNPIHSQKIERNEPCPCGSGKKAKRCCGTE
                     TKFFKSE"
     gene            174..638
                     /locus_tag="VI413_00890"
     CDS             174..638
                     /locus_tag="VI413_00890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913203.1"
                     /translation="MKNKWKAICDQLIKADTEFDNFLDNGGLTSISLNRSEKLRKEFN
                     ALKKAAADFDKYISPVEIEIKFPFHTTEMTEMWERWKNYLSEQHGELIRTNSEQCALE
                     HLAKISKGDEAKAVEFLRYAMACRYRNFFAIDEKASSQPAREEKPGKGSAYG"
     gene            720..1397
                     /locus_tag="VI413_00895"
     CDS             720..1397
                     /locus_tag="VI413_00895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913204.1"
                     /translation="MKIDELIEKAESERKREYAKIATIRQDISCEKFKHLFFIRANQT
                     LVTDHKSLEPFVVDEFNRDVLNLLYYYAARTNPDKINSLIGIVLAGAYGCGKSVMMSA
                     FCKVLFDLQLVREKVLEIHAIELAEEIRLKGVIPFARIPLLIQDMGKENNLLNNWGTK
                     INPISNLLALRAEYGSLTYGSTNMDLAGIKEQYEEYISKRFDEHVNRIFLPGKSRRPD
                     YSLNQPK"
     gene            1399..1830
                     /locus_tag="VI413_00900"
     CDS             1399..1830
                     /locus_tag="VI413_00900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913205.1"
                     /translation="MILGYMKYWPWGGFTNFAQKIIRGWKKHTMRIDKNNRWKPGMKI
                     QHAHGVRTKDYMMFFQGECKSVQKVEIIVSDKFDTDTYIMSFHPKRTKYFIVKIDDRK
                     LTNSEIIVLATNDGFDSVHDFFRWFKKGFIGKIIHFTDLRY"
     gene            1886..3124
                     /locus_tag="VI413_00905"
     CDS             1886..3124
                     /locus_tag="VI413_00905"
                     /inference="COORDINATES: protein motif:HMM:NF017116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VapE domain-containing protein"
                     /protein_id="HEY6913206.1"
                     /translation="MAFDYKETKKREKATDRVQQVEDFLKEHYDVKINVFDASKTLIV
                     AKNKDLYKSEIKFVDLSLHMEREGLRGCDSTLKKILASQNQITTFNPITEYLEGLKGQ
                     WKGVSHIDKLCNHIEVRDFGDKTKTYYPDRLRYVLRKYLAACVANSLNQIPNEAMLGF
                     ICAKEGIGKTRLIKFLTPKLLKPYYIQSSKDDRFDMTAAFAQNFFINFDELWGITKHN
                     SEQVKQTTSANEYHLSRRDTNAVPRYGNGVFTSNKSQEMGGFLHPQMGHRRWAAIELE
                     SINWKAYSVEVDVDQIWAEAYVLFNNADFDFTWNETDFAEFEEYNTRYLVETHAYRLI
                     KENYRVPTAEDDPEKIAFKQPQEMLMELRSRRKITTAMSDVSDVTIGLALKALGFTRE
                     MKKVNKILPRYGYNVISLFE"
     gene            3124..3948
                     /locus_tag="VI413_00910"
     CDS             3124..3948
                     /locus_tag="VI413_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011966200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0032775 - DNA methylation on adenine
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEY6913207.1"
                     /translation="MKTPITYYGGKQGLADVIISMFPGHKIYCEPFFGGGAVFFRKSK
                     SYLEVINDLDERLINFYQVTQNNFEQLKQLIDQTLNSESQYLHAKDIWNDRLPAGEIE
                     KAWAIWLITNGSFAGSMHGGWKWSNGASGSHTGVFIKNKRAYFSERIHDRLKTVQISC
                     RDALKVIPERDTPDTLFYLDPPYPGSYQGHYTGYSHKDLFELLQVLSNIKGKFILSNY
                     WCQTLKYHILRHGWNFKEIDVIIKTSNLGITDPEKSRKRTEILIYNFDLQKDLFTT"
     gene            3960..4427
                     /locus_tag="VI413_00915"
     CDS             3960..4427
                     /locus_tag="VI413_00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913208.1"
                     /translation="MEIFELYLPPVFKKSSKRAFRAPVFWSDDKLDILKMKFATTFNK
                     DLAAELGCGWRTVIRKARELGLEKEAGFLDKKRTEIVKLIQAVRKPNPTKGMKGWQVP
                     GGEKFQFKPGHVPASKLNPEVAKRLHASRNETIRRERIRVKIGLPPLTKLKIK"
     gene            4440..>4722
                     /locus_tag="VI413_00920"
     CDS             4440..>4722
                     /locus_tag="VI413_00920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913209.1"
                     /translation="MLITVPIPKFKEIESKLAIENIPEGYVINHIILDNKKYVITGGC
                     GNGKGGWEYFWMTEIIPLEIYTGDLKPLNYGEHWKEVRAEKRPRRYAGML"
BASE COUNT         1675 a          848 c          981 g         1218 t
ORIGIN      
        1 agaaataaca gaacaatcat tatgaataag cccgatagac aagtgaaagt atttgccgga
       61 aacggaaatc caattcactc acaaaaaatt gaacgaaacg aaccttgccc atgtggtagc
      121 ggaaagaaag caaaaagatg ttgtggtacc gaaactaaat tttttaaatc ggaatgaaaa
      181 ataaatggaa agcaatatgc gatcagctta ttaaggcgga caccgaattt gataattttc
      241 tggacaatgg cggcttaact tccatttcgc tcaacagatc tgagaaactc cggaaagaat
      301 tcaatgcact caagaaagca gctgcagact tcgataaata catttcaccg gtggaaattg
      361 aaataaaatt cccatttcac accaccgaaa tgaccgaaat gtgggaacgg tggaaaaact
      421 acctgagcga gcagcacggg gaactaatca ggactaacag cgagcaatgc gcactggaac
      481 atttagcgaa aatatcaaaa ggcgacgaag ccaaagccgt ggagttcctc cggtatgcaa
      541 tggcttgcag gtaccgaaac ttctttgcaa tcgacgaaaa agcatcgtcg caaccggcca
      601 gggaagaaaa gccaggaaag ggcagcgcat atggataatg aagacgtact cgacaaacaa
      661 tttttgtaca cattaattgc atttttatta ttagcagcta tttactcaat ataagattta
      721 tgaaaattga tgaattaatt gaaaaggcag aatcggaacg gaaacgcgaa tatgctaaaa
      781 ttgccacaat acgccaggat atttcgtgtg agaaatttaa acacctgttt tttattcgtg
      841 caaatcaaac gcttgtaacc gatcataaaa gccttgaacc atttgtggtg gatgaattta
      901 atcgcgatgt gctgaacctg ttatactact atgcagcccg cacgaatccc gacaagataa
      961 atagcctcat tggcattgtg ctggccggag cttacggctg tggcaaatcg gtgatgatgt
     1021 cggcattttg caaggttcta ttcgatctgc aattagtgag agaaaaagta ctcgaaattc
     1081 acgccattga attggctgaa gaaataaggc tcaaaggagt aattccgttt gcccgaatcc
     1141 cactgcttat tcaggacatg ggcaaagaaa ataatttact taataactgg ggaacaaaaa
     1201 taaaccctat atcgaatttg cttgccttac gtgccgagta tggctcactc acatacggat
     1261 caacaaatat ggatttggcc ggcattaaag aacaatacga agaatacatt tcgaaacgct
     1321 ttgacgaaca cgtaaataga attttcctac cggggaaaag ccgtcgacct gattactcac
     1381 ttaatcaacc aaaataatat gatactagga tatatgaaat actggccttg gggtggattc
     1441 acgaactttg ctcaaaagat aattcggggt tggaagaagc ataccatgcg aattgataaa
     1501 aataaccggt ggaaacctgg aatgaaaata caacatgctc atggtgtaag gactaaggac
     1561 tatatgatgt tttttcaggg agaatgcaaa tcggttcaaa aagttgaaat aatagtttca
     1621 gataaattcg atactgatac atatattatg agttttcacc caaaaagaac aaaatatttt
     1681 attgtaaaaa tagatgatag aaagttgact aactctgaaa ttatagtcct ggctacaaat
     1741 gatggatttg attcagtaca tgattttttt cgatggttta aaaaaggttt tattggcaag
     1801 attatacact ttaccgatct aagatattaa acaattacca ttgaactgat cctttctttt
     1861 actcacacaa aattgaatta aatccatggc attcgattat aaagaaacca aaaagcgcga
     1921 aaaagcaacc gaccgggtac aacaggtcga agatttcctc aaagaacact acgatgtaaa
     1981 aataaatgta tttgatgctt ctaaaacgct gattgttgca aagaataagg atttatataa
     2041 aagcgaaata aagtttgtcg acctatcgct gcacatggag cgcgaaggat tgagaggatg
     2101 tgactccacg ctgaagaaaa tacttgcctc gcaaaatcaa atcaccacat tcaaccccat
     2161 taccgaatac cttgagggat taaagggaca atggaaaggc gtaagccata ttgacaagct
     2221 atgtaatcac atagaagtcc gtgactttgg cgataaaaca aaaacctatt accccgacag
     2281 gttgcgatat gtacttcgaa aatatttagc ggcttgtgtg gcaaattcgc ttaatcaaat
     2341 tcctaacgaa gcaatgttag gatttatatg tgccaaagaa gggatcggta aaacccgcct
     2401 cattaagttc cttactccca aattgctaaa accctattat atccaatcga gcaaggacga
     2461 tcggtttgat atgacagctg cttttgctca aaatttcttt atcaattttg acgagctgtg
     2521 ggggattaca aaacataatt cggaacaagt aaagcaaact acttcggcta acgaatacca
     2581 cctttcacgt cgcgacacta acgcagttcc ccgctatgga aatggtgtat tcacttccaa
     2641 taaatcgcag gaaatgggcg gtttccttca cccgcaaatg ggacaccgcc gatgggcagc
     2701 aatagaactg gaatcaatta actggaaagc gtattcggta gaagttgatg ttgaccaaat
     2761 ttgggccgag gcctacgtac tattcaacaa tgccgatttt gattttacct ggaacgaaac
     2821 cgattttgcc gagttcgaag aatacaatac caggtacctg gtagaaacac atgcttaccg
     2881 actgataaaa gaaaactatc gggtaccaac tgcagaagat gatccggaga aaatagcatt
     2941 caagcaacca caagaaatgc ttatggaact ccgatcgaga cgaaagataa ccacggctat
     3001 gagcgatgtt tcggacgtaa caataggact ggcattaaaa gccctgggct ttacccgcga
     3061 aatgaaaaag gtaaacaaga ttcttccgag gtatggatat aatgtgatat cactttttga
     3121 ataatgaaaa ctccaataac atattacggt ggaaaacaag gactggccga tgtgatcatt
     3181 tccatgtttc ccgggcacaa aatatattgt gagccttttt ttggcggtgg tgccgttttc
     3241 ttcagaaaat caaaatcata cttagaggtg ataaacgatc tcgacgaaag gttgataaac
     3301 ttctaccagg tgacacaaaa taatttcgag cagctaaaac aactgattga tcagacattg
     3361 aattctgaaa gtcagtattt acatgcaaaa gatatttgga atgatcgtct gcctgcaggc
     3421 gaaattgaaa aagcctgggc aatatggcta attaccaatg gaagttttgc tggatctatg
     3481 cacggaggtt ggaagtggag caatggagct tcagggagtc ataccggagt ttttataaaa
     3541 aataaaagag catatttctc cgaacggatt catgatcgat taaaaacagt tcagatttct
     3601 tgcagagatg ctttgaaggt tatcccggag cgtgacactc cagatacttt attttatctg
     3661 gatccacctt atcccggttc ttaccaagga cactataccg gttattcgca taaagattta
     3721 ttcgagctgc tacaggttct ttctaatatc aaaggaaaat ttattttatc gaactattgg
     3781 tgccaaactt tgaaatatca tattctccgg cacggttgga atttcaaaga aattgatgtg
     3841 attatcaaaa cttcaaattt aggaataacg gatccagaaa aatcaagaaa aagaactgaa
     3901 attctaattt acaatttcga tttacaaaag gacttattta caacttaaca atcaattata
     3961 tggaaatttt cgaattatac ttgccacctg tttttaagaa aagcagtaaa agagcattca
     4021 gagctccggt attttggagc gatgataaac tggatatatt gaaaatgaaa tttgcaacta
     4081 catttaataa agacttagcg gctgagcttg gatgcggatg gagaacggta atacgaaagg
     4141 cacgtgagtt aggacttgaa aaggaagcgg gtttccttga taaaaaacga actgaaatag
     4201 tgaagttgat tcaggcagta agaaaaccta atccaactaa aggaatgaaa ggttggcaag
     4261 tgccaggcgg agaaaaattt caatttaagc caggacatgt gccggcttct aaattaaacc
     4321 ccgaagttgc aaagcgatta cacgcttcgc gaaatgaaac gattagaagg gaacgaataa
     4381 gagtaaaaat aggattacca ccattgacaa aattaaagat taagtaataa taaatcatca
     4441 tgctaataac tgtaccaata cccaaattca aggaaattga aagtaaactg gcaattgaga
     4501 atatccctga aggatatgtg ataaatcaca ttatcctgga taataaaaaa tatgtgatca
     4561 ccggtgggtg tggaaatggg aaaggtggtt gggaatattt ttggatgact gagataatcc
     4621 cgcttgaaat ttataccggt gatttgaagc cattaaatta cggtgagcac tggaaagaag
     4681 ttagagcaga aaaaaggcca cgaagatatg ctgggatgct tg
//
LOCUS       DATDNM010000054         2143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1608119, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000054 DATDNM010000000
VERSION     DATDNM010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1608119"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..425
                     /locus_tag="VI413_00925"
     CDS             <1..425
                     /locus_tag="VI413_00925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008861977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEY6913210.1"
                     /translation="FLLHPVVHLHVFNSAGELYLQKRNTNKDIQPGKWDTSVGGHVDF
                     GEEVPEALYREVREELGIIDYEPKFVTRYKFVSKQEAELVNVYFTVYDGEIQPDPAEI
                     SEGRFWSIGEIKNQIGNNVFTPNFEQEFENVVQNIEID"
     gene            445..1404
                     /locus_tag="VI413_00930"
     CDS             445..1404
                     /locus_tag="VI413_00930"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEY6913211.1"
                     /translation="MTLKKSLRSLFSEIFTFSKNDFHFLSYIYTLTLVIFFIYLNYSS
                     GFYREIMRPTYSNGDSTWAFPLFYGFMYFVVAIPVLFFQKDYKLLRNTNFYLKSLFFI
                     ILYGASIGYFGYRDWEFPSLFTEERLFTIKAISQLKGSIIYVIPLFFLKKNVDKKVDG
                     LYGLTNNTKHIQAYLTLFLMLLPFLIAVSFTPDFLSAYPQFHPWAFDGIFGFPTWWYT
                     AMYEATYAIDFVKTELVFRGMLVIGMVSIMGRKSVLPMVAMYAAIHFGKPLGETLSSI
                     FGGYILGALAYQTRHIWGGVIVHICIALTMETMGFIQYYLLKQ"
     gene            complement(1588..1923)
                     /locus_tag="VI413_00935"
     CDS             complement(1588..1923)
                     /locus_tag="VI413_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein subunit"
                     /protein_id="HEY6913212.1"
                     /translation="MQTEKQEYVDFAVTARKYKTLLTKKYQNRKPWVNPSPYEIQSII
                     PGTILDVFVKEGDVVKEGAPLLILEAMKMQNRIEMPFTARIKKINVEVGVKIPKELLM
                     IELEAVDAE"
BASE COUNT          635 a          385 c          381 g          742 t
ORIGIN      
        1 cattcttatt acatcctgtc gttcacttac atgtatttaa ttcagccgga gaattatacc
       61 tccaaaagag gaatactaat aaagatattc aacccgggaa atgggataca tcggtaggag
      121 gacatgttga ttttggcgaa gaggttcccg aagctttata ccgggaagtc cgtgaagaat
      181 tagggataat tgattatgag ccaaagtttg ttacacgcta taaattcgta tcaaaacagg
      241 aagccgagtt agtaaatgtg tattttacgg tttacgacgg tgaaatacaa cctgatccgg
      301 ctgagatttc ggaaggcaga ttctggtcaa tcggggaaat aaaaaatcaa attggaaata
      361 atgtttttac tcctaatttc gaacaagagt ttgagaacgt agtacagaat atagagattg
      421 attaacacac atactccttg atctatgact ttaaaaaaat cacttcgttc attgttcagc
      481 gaaatattca ctttttcaaa gaatgatttt cattttctat catacattta caccctcacc
      541 ctggttatct tttttatata tctaaattac agttccggat tttacaggga aataatgcgc
      601 cccacatact ctaatggaga ttcaacttgg gcatttcctt tattttatgg ctttatgtat
      661 ttcgttgttg ctattccggt tttgttcttc cagaaagatt ataaactgct tcggaatacc
      721 aatttttatc tgaaaagttt atttttcatt atactttatg gggcatcaat cggttatttc
      781 ggataccgcg attgggaatt tccatcttta tttaccgaag aaagactatt tactataaaa
      841 gcgatttcac aactaaaggg aagcataatt tatgtgattc cattgttttt tcttaagaaa
      901 aatgtagata aaaaagttga cggactctat ggattaacta acaataccaa acatatacag
      961 gcatacctga ctttgttttt aatgcttttg ccatttttaa tagcggtttc ctttactcct
     1021 gattttctaa gcgcatatcc acaatttcac ccatgggcat tcgacggcat ttttgggttt
     1081 ccaacatggt ggtacacagc aatgtacgaa gctacttacg ctatcgattt tgtcaaaaca
     1141 gaactagtat tccgcgggat gctggtcatt ggtatggtaa gtatcatggg aagaaaatca
     1201 gtacttccca tggtggccat gtatgctgcc attcattttg gaaaaccgct tggagaaaca
     1261 ctttcttcta tctttggcgg gtacattctt ggagcgctgg cttatcagac ccgacacatc
     1321 tggggtggcg taattgtgca tatttgcatt gcactaacta tggaaacaat ggggtttatc
     1381 caatattatc tgcttaaaca ataaaaaata cagcatcagg taagtgattg ctaagtgata
     1441 gtactgtact aattgtgatt tgtctgtgaa tcctctgtga ttctctgtga attgtatgtg
     1501 aattgtatgt gaattcaaac tttcatataa aagataaaaa aaacggttga ccatttctga
     1561 tcaaccgttc tcattatctg atatttttta ttcggcatct accgcctcca actcaatcat
     1621 caatagctct ttaggaatct tcactcccac ttctacattg atttttttga ttcgggccgt
     1681 aaacggcatt tcaatacgat tttgcatttt cattgcttcc aaaatcaaga gtggtgctcc
     1741 ttctttcact acatcacctt ctttcacaaa aacgtcaaga atagttccgg gaataatcga
     1801 ttggatttcg tacggacttg gatttaccca gggttttcta ttctgatatt ttttagttaa
     1861 taatgttttg tatttgcgcg ctgttacagc aaaatcaaca tattcttgtt tttctgtttg
     1921 cataatttat tttagttact agttataaat cacttcatct gatattgcaa atgattttgc
     1981 aatccaatag taaatcgtaa ataactaaat tgtaaattag aatggtggaa caccgtgttt
     2041 ttttgcagga cgataatcgt ctttgttctt agaaacttca agagcgtgca ataacaattc
     2101 gcgggtttcc attggctcaa taactgcatc gatataacct tta
//
LOCUS       DATDNM010000055         3087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_860141, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000055 DATDNM010000000
VERSION     DATDNM010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3087
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_860141"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..264
                     /locus_tag="VI413_00940"
     CDS             <1..264
                     /locus_tag="VI413_00940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005867077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter, permease protein
                     PstA"
                     /protein_id="HEY6913213.1"
                     /translation="IGRVSGETAPILFTVAAYFLPKLPHSIFDQVMALPYHLYVISTS
                     GTDIEASRGIAYGTALVLIVIVLLVNLLANFLRNYFSKKVKTN"
     gene            356..1108
                     /gene="pstB"
                     /locus_tag="VI413_00945"
     CDS             356..1108
                     /gene="pstB"
                     /locus_tag="VI413_00945"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HEY6913214.1"
                     /translation="MLTIDAKNVDFYYSEFHALKNINIEVEKNKVVALIGPSGCGKST
                     FLRLLNRMNDLIDGTRMTGSVLIEGKDIYAPNVHVDELRKEVGMVFQKPNPFPKSIFE
                     NVAYGLRVNGVKDKTFIEERVIESIKSAALWNEVKDKLNKSAFALSGGQQQRLCIARA
                     LAISPSVLLMDEPASALDPISTAKIEELIYELKKDYTIMIVTHNMQQASRVSDKTAYF
                     YLGEMIEYDDTIKIFTNPKEHSTQNYITGRFG"
     gene            1206..1874
                     /gene="phoU"
                     /locus_tag="VI413_00950"
     CDS             1206..1874
                     /gene="phoU"
                     /locus_tag="VI413_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEY6913215.1"
                     /translation="MMRHLEQELFSLRQDIIDMWKLVISQVENSGEAILSFDKELAQK
                     VSMREKKVDAYELKIDSECENIIALHQPVAIDLRFVLAVFKINSNLERIADFAYGIAR
                     TLISTPSVILDAELISDTRLQDMIAQVNRMLTQGLDAFENEKSDFAAAIFSEDYQVDE
                     INNNAPRIIADYIQKNPDRAYECLQLIGAFRKLERMGDHCSNIAEEIFFYIDAKILKH
                     SPKK"
     gene            2035..>3087
                     /locus_tag="VI413_00955"
     CDS             2035..>3087
                     /locus_tag="VI413_00955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913216.1"
                     /translation="MKTKIFQLLALILVLSFASCDLITQINQTVSLKKETFSGYVQKG
                     PFVNGSSVTISELDKDLNQTGRSYSTTVAANTGSFEQKKIELVSDYVQLKADGYYFNE
                     VSGESSSGQLTLYALADVSKVNSANINVLTHLERSRVEYLVQNDGLTFANAKKQAQQE
                     VLSIFSLALPADSTSESLNLSAIGENNAILLAVSCILQGVLTTGDMSELMGNIIADIR
                     TDGNLDNAALGSALIDNARLIDLAKVRTNLQTKYTQLGMVDIIIPDFEKYVQEFISKT
                     TYTPAKVISYPNMGSYGPNILSDSITSIAGGSDNHYSMKANLPTGTSLKIVIKGGVWF
                     YVALPAPTNWTISTYNQ"
BASE COUNT          961 a          684 c          656 g          786 t
ORIGIN      
        1 attggacgtg tatcgggcga aacagctccg attctgttta ccgtagctgc ttacttcctg
       61 cctaaactgc cacacagcat tttcgaccag gtaatggcgc tgccttatca cttgtacgta
      121 atttccacca gtggaaccga cattgaagct tcacgcggca ttgcctacgg aacagcactg
      181 gtactgattg tgattgtgct actggtaaac ctgctggcca atttcctgag gaattatttt
      241 tcgaagaaag taaaaacaaa ctagtttata gtaggtagtt tatagtaggt agtttatagt
      301 aaaaaaatat aacgaccggt gattattaca gttgaccggt gacataagaa aaaatatgct
      361 aaccattgat gcaaaaaacg ttgattttta ttacagtgag tttcacgcac tgaaaaatat
      421 caacatcgaa gtagaaaaaa acaaagttgt agcacttatc ggaccttcgg gctgtggcaa
      481 atcgactttc ctgcgattac tgaaccgcat gaacgacctg attgacggca cacgcatgac
      541 cggttcggtg ttgattgaag gaaaagacat ttatgctccc aacgtccatg tagacgagct
      601 gcgcaaagag gtgggaatgg ttttccagaa accaaatccg tttccgaaaa gcattttcga
      661 aaatgtagct tacggacttc gggtgaacgg cgtaaaagac aaaacattta tcgaagaacg
      721 cgtgattgag tctatcaaat cggcagcctt gtggaacgag gtaaaggaca aattgaataa
      781 atcagctttt gccctttcgg gaggacaaca acaacgcctt tgcatcgccc gtgcattggc
      841 tatttcgcca agcgtattgc ttatggacga acccgcttcg gcactcgacc ctatttcgac
      901 agccaaaatc gaagaactga tttacgagtt gaaaaaagat tacaccatta tgattgtaac
      961 ccacaacatg caacaggctt cgcgcgttag tgataaaacg gcttatttct acctgggtga
     1021 aatgattgaa tacgacgata caattaagat attcaccaac ccgaaagaac attctacaca
     1081 gaattatatt acgggaaggt ttggataacc ccccaccccc aaatgggggc ttttgagggc
     1141 ataaaaaata tagaattatt taaaatacta atctttaaac ccccttcagg gggtatgagg
     1201 gctaaattat gagacactta gaacaagaat tattctcact tcgccaggac attattgata
     1261 tgtggaaact ggttatctcg caggtggaga attccggtga agccattttg tcgttcgaca
     1321 aggagttggc gcaaaaagtt tcgatgcgcg agaaaaaagt ggatgcttac gaactgaaaa
     1381 ttgacagtga gtgcgaaaat atcattgccc tgcaccaacc ggtggctatc gatttgcgct
     1441 ttgtgttggc tgtatttaaa atcaattcca atctggaacg aatcgctgac tttgcgtatg
     1501 gcattgcccg taccctgata tcaacgcctt cggtaatact cgatgcagaa ttgatttcag
     1561 acacccggct acaggatatg attgcccagg taaacagaat gcttacgcag ggactggacg
     1621 cgttcgaaaa tgaaaaatcg gactttgcag cagctatttt cagcgaagat tatcaggtcg
     1681 acgaaataaa taacaacgcg ccgcgtatca ttgccgatta tatacaaaag aaccccgacc
     1741 gtgcttacga atgcctgcaa ctcattggtg ctttccgcaa actggaacgt atgggcgacc
     1801 actgcagcaa cattgccgaa gaaattttct tctatattga tgcgaagata ttaaaacatt
     1861 cgcctaagaa ataactaaac cttacctgtt cgaaaaagag gaatatgccc gggcatattc
     1921 ctctttttcg tttttactaa aaaataaccc acaaaaacct ttgttgttta gttaatagtt
     1981 actacatttg aggcctgtta aaagtcaatt caaaaaacta ttttttcaag aactatgaaa
     2041 acaaaaatct tccaacttct cgccctgatt ttggtgctga gcttcgcgtc gtgcgacctg
     2101 atcacgcaga taaaccagac tgtatcgctc aaaaaagaaa cttttagcgg ttatgtgcaa
     2161 aagggtccgt ttgtaaacgg gtcatctgta accatttcgg aactggataa ggacctgaac
     2221 caaaccggac gcagttactc caccaccgtg gcagccaata ccggcagttt cgaacaaaag
     2281 aaaattgagc tggtgtcaga ctatgttcaa ttgaaagccg atgggtatta tttcaatgaa
     2341 gtaagtggtg aatcgtcgtc cggacaattg accctgtatg cactggcaga tgtatcgaaa
     2401 gtgaactcgg ccaacatcaa tgtgctgaca catttggaaa gaagccgcgt ggaatacctg
     2461 gtgcaaaacg acggactcac ctttgccaat gccaagaaac aagcacagca ggaagtgttg
     2521 tcaattttca gcctggcatt gcctgccgat tccacttccg aaagcctaaa cctgagcgct
     2581 atcggagaaa acaatgccat attactggct gtatcatgca ttttgcaggg cgtacttacc
     2641 accggcgaca tgtccgaact catgggaaac attattgccg acatcagaac agatggtaac
     2701 ctggacaatg ctgcacttgg atcggcgctt atcgacaacg cccgcctgat agacctggct
     2761 aaagtgcgca ctaacttaca aaccaaatac acccagctcg gaatggtaga tataattatc
     2821 cctgatttcg aaaaatatgt gcaggaattt atatccaaaa ccacttatac acccgcaaaa
     2881 gtaatctcct atccgaatat gggcagttat ggcccgaata tcctatccga ctcaatcacc
     2941 tctattgccg ggggatcaga taaccactat tccatgaaag caaatctccc aacaggcacc
     3001 agccttaaaa tagtgattaa aggtggagtg tggttttacg tagccttgcc tgcacctaca
     3061 aactggacta taagcaccta caaccaa
//
LOCUS       DATDNM010000056         3338 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_6286, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000056 DATDNM010000000
VERSION     DATDNM010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3338
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6286"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..606
                     /locus_tag="VI413_00960"
     CDS             <1..606
                     /locus_tag="VI413_00960"
                     /inference="COORDINATES: protein motif:HMM:NF025492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4294 domain-containing protein"
                     /protein_id="HEY6913217.1"
                     /translation="EQALANPDTIVVPKPEIVLLKKEDSVKQAEKDSVILAQITQLQK
                     PSTNSNASNQRYLKEREKFKFYQQNYRNIRNFKKVYPYALKTREILENLNKQLATMTN
                     ESDKKKLIKETEQTLFKEYEAAVRTMTTSQGRLLLKLIARETNKTGYDIIKDYKGGFS
                     ASFWYGVGKLFGTDLKSEFHKEREDSTIENIIDKYKKDDLY"
     gene            845..1489
                     /locus_tag="VI413_00965"
     CDS             845..1489
                     /locus_tag="VI413_00965"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF019610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031012 - extracellular matrix [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEY6913218.1"
                     /translation="MKLRGIIFYFIAAMFLSSCIQHAPAKNTTETPGKSNTNTSELII
                     SIQPFDDLPEAYLEYVIIRLRKLYPHVSIQPPIPLPPTALNQSGTRYRADSLIRYLRD
                     RRDGLKSGHITIGLTSKDVSVTRGQTTDCCIMGFAYRPGKAGVASFYRLKKNNQFKNF
                     FKLVLHELGHTQGLHHCSKRICLMRATKKNHFDDLTDFCPACKATLNKAGWTIK"
     gene            complement(1548..2825)
                     /locus_tag="VI413_00970"
     CDS             complement(1548..2825)
                     /locus_tag="VI413_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEY6913219.1"
                     /translation="MELLIIIALILLNGVFSMSEMSLVSSRKFKLESAKKKGSKGAKT
                     ALELSENPTKFLSTVQIGITLIGILLGVYSGEKLTRDVEVYLNKFELLTAYSHDIAVG
                     LIVVAITYLSILLGELFPKRLGLTFPEPVAIFLAKPMKVLSVITSPFVWLLTVSNDII
                     LKILGIKSTMDSKVSEEEIKSIIKESAEGGEIQDIEQDIVERVFELGDRRVNSLFTHK
                     NDIVFFDDTDDLQAIRLKITAEKHSAYPVCSNNNIDEIVGIVLLKDLFTPSIEQNFKL
                     QDFIREPLFINEGTFAYKLLEKFKKERMHYGIVVDEYGSTQGIVTMDDVVDALVGDVT
                     EHNQNEYQITPRNENSWFVDGQYSFAEFLRYFDIEMDENIDGNFVTIAGFFIYKFNNL
                     PDIGDKLKIDSYELEIIDKDRQRIDKVLVTKIA"
     gene            complement(3036..>3338)
                     /locus_tag="VI413_00975"
     CDS             complement(3036..>3338)
                     /locus_tag="VI413_00975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913220.1"
                     /translation="NYDRIRENVGLYPKRDRVSIINDSVNQMLGRTFSTTFTVIITLI
                     AMFVFGGDSIRGFIFAMLFGIFIGVYSSVFIASPVTVEMDKLVKIRRSKKALEEKK"
BASE COUNT         1106 a          730 c          571 g          931 t
ORIGIN      
        1 gaacaagcac tggctaatcc cgatacaatc gttgtgccta aaccggaaat tgtactcctg
       61 aaaaaagaag actcggttaa acaggctgaa aaggactcgg tgatattggc ccagataacc
      121 caactgcaga aaccatctac caattcaaat gccagcaatc agcgctacct gaaagaacgc
      181 gaaaaattca agttttacca acaaaactac cggaacatac gcaacttcaa aaaagtctac
      241 ccatacgccc ttaaaacacg tgaaatctta gagaatctga acaagcaact ggccactatg
      301 accaacgaga gtgataagaa gaaactgatt aaggaaactg aacaaaccct gttcaaagaa
      361 tatgaagccg cagtacgcac catgactact tcgcagggac ggctgttgct caagcttatt
      421 gcccgtgaaa ccaataagac cggctacgat atcattaaag actacaaagg cggtttctcg
      481 gcttcgttct ggtacggagt gggaaaactc ttcggcaccg acctgaaatc cgaattccac
      541 aaagagcggg aagactccac aatcgaaaac atcatcgata agtataaaaa ggatgatctc
      601 tattaagaaa ccatctgccg aagttgccgg gaaataaacc tgctgttggc ttattaaact
      661 attctgtttt ttcgaagcta atatcttcaa ttgctttctg tcctgccaat ggttatgaca
      721 ttgtaaagtg taacgagata tcctcccaca aaaaatattt aaatcgcaac ttggggttgt
      781 tagtatgtgg cggaaaaaat gtatcttgca gggacagtaa ggctatacac gtaaaaacaa
      841 gtctatgaag cttaggggaa taatatttta ctttatagca gcaatgtttc ttagttcctg
      901 cattcagcat gcacctgcca aaaacacaac agaaacaccg ggtaaaagca ataccaatac
      961 aagcgaatta attatctcaa tccagccatt cgatgattta cccgaagcat atcttgagta
     1021 cgtcattata agattgagaa agttatatcc acatgtatcc atacaaccac cgattccatt
     1081 acctccaaca gcattaaacc aatcagggac acgttaccgt gcagattctt taatcagata
     1141 cctcagagat cgcagggatg gcctaaaatc cggacatatt acaataggtc tgacctcaaa
     1201 agatgtcagt gtaaccagag gacaaactac cgactgctgc ataatgggct ttgcctatcg
     1261 ccccggaaaa gccggtgttg cctctttcta tcggttgaaa aaaaacaatc aattcaaaaa
     1321 tttcttcaaa ctggtacttc atgaattggg acacacgcag ggactgcatc attgttccaa
     1381 aaggatttgc ctgatgcggg caactaagaa aaatcacttt gatgatttga ctgatttttg
     1441 cccggcatgt aaagctactt taaataaagc aggatggact ataaagtaag attaagggtt
     1501 ctagtagaga tataaaatcg tcaagccagt ctatttaaaa agacgaatta agctatttta
     1561 gtcaccagca ccttgtcaat cctttgccgg tctttgtcaa tgatttccaa ttcgtaggaa
     1621 tctattttaa gcttatcgcc aatatcaggc aggttattaa acttgtagat aaagaagcca
     1681 gcaattgtta caaaattccc gtcaatattt tcatccattt caatgtcgaa ataacgtaaa
     1741 aactcagcaa aagagtattg cccatccaca aaccaactgt tttcattccg tggagtaatt
     1801 tgatattcgt tttgattatg ttccgtcaca tcgccaacca acgcatccac cacatcatcc
     1861 attgttacaa tgccctgggt agaaccgtat tcgtctacca caattccata atgcattctt
     1921 tcttttttga atttctccaa tagtttatag gcaaatgtac cttcattaat aaataatggc
     1981 tcacgtataa aatcctgaag tttaaagttc tgctcgatgg aaggcgtaaa caaatctttc
     2041 aacaaaacaa ttcctacaat ctcatcaata ttattgttgc tgcaaaccgg ataggctgaa
     2101 tgcttttcgg ccgttatttt taaccggata gcttgcaaat catccgtatc atcaaaaaac
     2161 acaatgtcat tcttgtgcgt aaataatgaa ttcacccttc tgtcacccaa ttcaaacacc
     2221 cgttctacga tatcctgctc aatatcctgt atctcgccac cttcggcgct ttcttttata
     2281 attgatttaa tttcttcttc cgacacctta ctatccatgg tgcttttaat acccagaatc
     2341 ttcagaataa tatcgttaga tacagtcaac agccatacaa acggcgatgt gataaccgac
     2401 agaactttca ttggctttgc cagaaatatt gcaaccggct cggggaaagt aagtcctaat
     2461 cgcttgggaa ataattcccc taacaagata gataagtaag ttattgcaac tacaatcagt
     2521 cccacagcaa tatcatgcga ataggctgtc agcaactcaa atttattgag atatacctcc
     2581 acatcgcggg tgagtttttc gccactataa accccgagca aaattccaat cagcgtaatt
     2641 ccaatttgaa ctgttgaaag gaatttggtt gggttttcag aaagttccaa cgcagtttta
     2701 gctcctttac ttcctttctt cttagcgctt tccagtttaa acttcctgga agagaccagc
     2761 gacatctctg acattgagaa tacgccatta agtagtatca gcgctataat aattagtagt
     2821 tccaaaattt atattattaa gttacaacaa ttgacggtca aagatactaa caatttttgt
     2881 gactgtaagt attaaattta ccagaaaata gtaccggaga aaacctgaat agaagtacaa
     2941 cacactcatt ttgcaaaacc ctttttacac aaaaaagcct tactgaaaat aatcagcaag
     3001 gcttttccgg cttttataaa acgtatttct atgaattatt tcttttcttc caacgctttt
     3061 ttgcttcttc ttatttttac cagcttatcc atttccacag taaccggtga agcgataaat
     3121 acagaagagt aaaccccgat aaagatacca aataacatgg caaagataaa tccgcggata
     3181 gaatcaccac caaaaacaaa catggcaatc aatgtgataa ttaccgtaaa ggtagtactg
     3241 aaagtacgtc ccaacatttg gtttaccgag tcgttgataa tcgaaaccct gtctcgtttc
     3301 ggatatagtc ctacattttc acggatacgg tcgtagtt
//
LOCUS       DATDNM010000057         3723 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1288409, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000057 DATDNM010000000
VERSION     DATDNM010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3723
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1288409"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..464)
                     /locus_tag="VI413_00980"
     CDS             complement(<1..464)
                     /locus_tag="VI413_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913221.1"
                     /translation="MTKGQRIIESLYRLFSLSKSKNNSRNRQHENTDLKPRMNLTHGF
                     KIDKPDIFVPWDIDEKALTNLFERYKIKQVTTGYYTAKCCSLDNLNCMIGFHFEPRTN
                     GKLNELEFFRMKYHDQKKSFDEFQSNFEKEFGQPTRYSMGTEGYNNYTWQIG"
     gene            complement(669..1379)
                     /locus_tag="VI413_00985"
     CDS             complement(669..1379)
                     /locus_tag="VI413_00985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913222.1"
                     /translation="METNNVIKKLIYKNTGKFMLLFSVLSLTSVTTFWWLSIFSLIFY
                     TWNFFNEKEYLRLTITFFFLTILLIVFNFSVIKPTKDWAEKARAKWDKTGIDSTFIPG
                     AQLNLNVIARSVEEYKSKYGTYPNQLSEIQNISMNLLNNDVSYRLKDTDGQTRPIMFY
                     YEKINSNKYYLAGVGRDGKIKTNDDLLPQISLEQKNSTGLLKYVVKSFSEEEIKEENG
                     VMIMFKRSRVIENMDKNK"
     gene            complement(1645..3387)
                     /gene="xerA"
                     /locus_tag="VI413_00990"
     CDS             complement(1645..3387)
                     /gene="xerA"
                     /locus_tag="VI413_00990"
                     /inference="COORDINATES: protein motif:HMM:NF040815.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008907 - integrase activity [Evidence
                     IEA];
                     GO_function: GO:0009037 - tyrosine-based site-specific
                     recombinase activity [Evidence IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase/integron
                     integrase"
                     /protein_id="HEY6913223.1"
                     /translation="MKATEIIHRNEARIRVDFPYNQELVSKLRQISDARWSKTMGAWH
                     VPYTKEAFVQLKTLFPEVEYESIPLVMTSSNLSIPDKPRLIKKTPLPVNHDLLVPNAA
                     SSTDKPQITDSAIEIRSTEMAGRDLSPLKPNDLSIEITQNHVYIKMPKNEADIQYIRS
                     FKYAQWDMLNFHWTIPNYRDNAAKIKAYFSSRNPVVVELYTTVEKQNKEEQHTFSKYE
                     LLVVNNFRTLKVYFSYSVSLIREIKNIPYAGWNPTGNYWTIPVSDKYIGELKQLAERY
                     SLEFIYKEEQKTKVKPRTSWVGMENFRECPQEFIAKLKELRYSKNTLETYKHMFEEFI
                     NYYRETEIADITDKMIVDFLRYLVNERNISGSYQNQSINAIKFYFERVLGGQRKIYTI
                     DRPRKEKMLPEVLSEEEVVQLLNATENLKHKAILMTIYSAGLRVSELTNLRIKDIDSD
                     RMQIRVEQAKGKKDRYTLLSNTALEILRKYVKEYKPKEWLFEGAKGEKYSTSSIQANL
                     KIAVEKAGLKKSITVHTLRHSFATHLLEAGTDIRYIQSLLGHSSGKTTEIYTHITTKG
                     FEQIKSPLDKLKIN"
BASE COUNT         1030 a          690 c          641 g         1362 t
ORIGIN      
        1 ttacctattt gccaagtata attgttatat ccttcagttc ccattgaata tcttgtcggt
       61 tgtccaaatt ctttttcaaa attcgattga aattcatcaa acgatttctt ttggtcatga
      121 tatttcattc tgaaaaattc aagttcattt aattttccgt ttgttcttgg ctcgaaatgg
      181 aaaccaatca tacaattcaa attgtcaaga gaacaacact tcgctgtata gtaaccagtt
      241 gtaacttgtt ttatcttgta tctttcgaat aagtttgtca gtgctttttc atcaatgtcc
      301 caaggaacaa aaatatctgg tttgtcaatc ttaaaaccat gagttaagtt cattctaggt
      361 tttaaatctg tgttttcatg ttgcctgttt ctcgagttgt ttttcgattt gcttagacta
      421 aaaagtcgat ataatgattc aataattctt tgtcccttag tcatttctat tcagtttttg
      481 tttttttagc cttaccgcta acgaccgagg ctatgggcat ttggcggttt gcgggagcat
      541 tcgctgtcgt ggaacgacaa agtgaatgcg ggagcaaaac tgccgaaatg cacgtcagcc
      601 agccaatgcg cataggcgtg tgttatgtgt agctttttgt caattgtagt ttgaaatacg
      661 ttataatact atttattttt gtccatattc tcaattaccc tcgacctctt aaacattatc
      721 attactccat tttcttcttt aatctcttct tctgagaatg atttcacaac atatttcagt
      781 aaaccagtcg aattcttctg ttctaaagat atttgaggta gtaaatcatc atttgttttt
      841 atttttccat ctctaccaac accagcgaga taatatttat ttgagttaat tttttcatag
      901 taaaacatga ttggtctagt ctgaccgtct gtgtctttta acctataaga cacatcattg
      961 tttaatagat tcatacttat gttctgtatt tctgataatt ggttcggata agttccatat
     1021 ttggatttat attcttcaac acttctcgct attacattta aatttagttg tgcccctgga
     1081 ataaaagtac tatcaatacc tgtcttatcc cattttgctc tcgctttttc agcccaatct
     1141 ttagtcggtt ttattacaga aaaattgaaa acgattaaca gaattgtaag aaagaaaaaa
     1201 gttattgtta gtcttaggta ttctttttcg ttgaaaaagt tccatgtgta gaaaatcaat
     1261 gaaaatatag ataaccacca aaatgtcgtt acactagtca atgataaaac cgaaaataaa
     1321 agcatgaact tgccagtatt tttataaata agctttttaa tcacgttgtt agtctccata
     1381 caattacttg tctttgtctt ttttttaagt tacacataac acgtgaatat actcagttga
     1441 aaatggatat gttcagttaa ctgaacatat atcgcattta tctattgtgc ctgattgttg
     1501 taaatgtctg tatgatagta aaatataaat ttcaatcaat ttaatggtac tgaacatatc
     1561 caacttgtta atatagtgat tcttgtttat tatatactta aaatccaaag gtaagaacta
     1621 tttcctaaat taactgcaat ttatttaatt tatcttcaat ttatctaatg gactttttat
     1681 ttgctcgaaa cctttggtgg taatatgtgt ataaatctca gtagttttac cacttgagtg
     1741 tcccaacaga ctttgtatat aacgtatgtc tgtgccggcc tcgagtaggt gagtggcaaa
     1801 actatggcgt aacgtatgaa ccgttatact tttttttaat cctgcttttt ctactgcaat
     1861 tttcaaattt gcctgaatac tgcttgtgga atatttttct ccttttgctc cttcaaacaa
     1921 ccactcctta ggtttatatt cttttacgta tttacgcaat atctcaagtg ctgtattgct
     1981 aagcaacgta tagcggtctt ttttcccttt ggcctgttcc acccgtattt gcatgcggtc
     2041 gctatcaatg tcctttatcc gtaggttggt tagttcgctt acccgcaatc cggccgagta
     2101 aatagtcatt aatatggcct tatgcttcag attttcggtg gcattgagta attgaaccac
     2161 ttcttcttca ctcaacacct cgggcaacat tttttcctta cgggggcggt cgatggtgta
     2221 aatctttcgt tgtccgccca gcactcgttc aaaataaaat ttgattgcat ttatggactg
     2281 gttttgatac gatcctgaaa tattgcgttc attcaccagg taacgcaaaa aatcaacaat
     2341 cattttatcc gtaatatctg ctatttccgt ttcgcgataa tagttgataa actcctcgaa
     2401 catatgctta tatgtttcaa gcgtgttttt actatagcgc aactccttta gtttggcaat
     2461 aaattcctgc ggacattcac ggaaattctc catgcccacc cacgaagtgc ggggttttac
     2521 cttcgtcttc tgttcttcct tgtagataaa ttccagtgaa tagcgttcgg caagctgttt
     2581 caactctccg atatatttgt ccgatacagg tatagtccag taatttccgg tagggttcca
     2641 tccggcgtaa ggaatgtttt tgatttcccg aatcagactt accgagtatg aaaaatacac
     2701 tttcagcgtt ctgaagttat tcacgaccag tagttcatat ttactgaaag tatgttgttc
     2761 ctctttgttt tgcttctcca cagtcgtata cagttctaca acaaccggat ttcggctgct
     2821 gaaataagct ttaatctttg ctgcattatc acggtaattc ggaattgtcc agtgaaagtt
     2881 cagcatatcc cattgggcat atttaaagga acgaatgtat tgaatatctg cctcattttt
     2941 aggcattttt atataaacgt gattttgggt aatttcaatc gaaagatcgt tcggttttag
     3001 tggtgacaga tcgcgacctg ccatttctgt ggatctgatt tcgattgctg aatcggttat
     3061 ttggggttta tcggttgacg atgccgcatt gggtaccaat aaatcatggt ttaccggcag
     3121 tggtgttttt tttattaacc ggggtttatc gggtatcgac aagttgctac ttgtcataac
     3181 aagaggtatt gactcatatt ccacttccgg aaacagggtt ttcaattgta caaatgcctc
     3241 tttggtataa ggtacatgcc aggcacccat ggtcttgctc caacgggcat cggatatttg
     3301 ccgtagtttc gaaaccaact cctgattata cggaaaatca acacgaatac gcgcttcatt
     3361 tcgatgtata atttcggtag ctttcataac tgtatcttaa tttaagcctc aaagataaaa
     3421 actatttttc acattaacag caattctttt aattaaaatg atattttttt tagtaatact
     3481 aactgtacat ataaaatgac ccaaagtgat ttttatgtct actgttgtta atgccgttgc
     3541 ttcaaacaat atagtatcaa tgtgacgaac cagcctgcgg taggcaggat cgaaattgga
     3601 ctatatgttt gtgcaaacgg tataagtcag ggtgtgtggc agaagcccga caaataaaaa
     3661 ctgcttttcc tcaaatggct acgggttaat ctgatataac tgtaatgtaa cctgttggaa
     3721 gtg
//
LOCUS       DATDNM010000058         2246 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1288439, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000058 DATDNM010000000
VERSION     DATDNM010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1288439"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1573
                     /locus_tag="VI413_00995"
     CDS             <1..1573
                     /locus_tag="VI413_00995"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY6913224.1"
                     /translation="NPEAFMVLGSAETLGSQSHFFIPVDNKLKIYQRADTNQMPELFD
                     FPTSFSRTKQTNLVPQIQVKPTLNIQTLADQLLLQHFSPPGVLVNDRGDIIYISGRTG
                     KYLEPAVGKANMNIFAMLREGLQNEFPAAFRQAIMNKEQVTLHNIKVGTNGGTQYINV
                     IIQCIDKPEALKGLLMIIFHDVPKVLADKMPGVKRNKMANNVKQLELEKELQHMREQM
                     QNTLEEMQTSQEELKSTNEELQSTNEELQSTNEELTTSKEEMQSLNEELQTVNAELQS
                     KVDDFSRVNNDMKNLLNSTDIATLFLDKNLNIRRYTNQATKIFKLINSDIGRPITDQV
                     THLNYPELETDALEVLRTLVFIEKQITTTDGRWFSTRIMPYRTFDDRIDGLVITFFNI
                     SDYKQLEVELNETRQIHGLLLNSSNNVIVKLSIDWKIQEYNAAAEKFFGKKREDILNK
                     NYLQLFISEADQKKIEKELNKILKYEEEATLKMHVIAADANLRDIDWVVNVLLNAQKT
                     PTGIILIAKKTLRYE"
     gene            1566..2111
                     /locus_tag="VI413_01000"
     CDS             1566..2111
                     /locus_tag="VI413_01000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY6913225.1"
                     /translation="MNNEKNHSDTVFLRIKAEEKLKTKQNIISASDTENDAIKLMHEL
                     QVHQIELEMQNEELRKAAEEVENALRKYTMLYDLAPMGYFTLEPDGTIIELNFAGAEI
                     LQDKRSRLVGTNFKLFVSNESTAQFNEFFSDIFKFSYKQSCKVKLSHDNNQLGYVYME
                     GISIDEEKCLLSLIKTTKLQK"
BASE COUNT          805 a          406 c          430 g          605 t
ORIGIN      
        1 caatcccgaa gcatttatgg tgctcggaag tgccgaaact ctcgggagcc aaagtcattt
       61 ttttattccg gtagataata aactgaaaat ttaccaacgc gctgatacga atcaaatgcc
      121 ggaattgttt gattttccaa catcattctc ccggaccaaa caaacgaatc ttgtgccaca
      181 aattcaggta aaaccaactt tgaatattca aactcttgct gatcaactgc ttttgcaaca
      241 tttttcgcca ccgggtgttt tagtaaatga cagaggtgac attatttaca tcagcggacg
      301 aactggaaaa tacctggaac cggctgttgg caaagcaaat atgaatattt tcgccatgtt
      361 gcgcgaaggt ttgcagaatg agtttccagc ggcattcagg caagccatta tgaacaaaga
      421 gcaggtaact ttgcataaca taaaagtagg taccaatggt ggcactcaat acataaacgt
      481 tatcatccag tgtattgaca agcccgaagc attaaaaggc ctgttgatga ttatcttcca
      541 tgatgttcca aaagttttgg cagacaaaat gccgggtgtg aaaagaaata aaatggctaa
      601 caacgttaag cagttggagt tggaaaaaga gttgcaacat atgcgcgaac agatgcaaaa
      661 cacgctcgaa gaaatgcaaa cctcgcaaga agagctgaaa tcaacgaacg aagaactgca
      721 atcaactaat gaagaactgc aatcaaccaa cgaagaactg actacttcga aagaagaaat
      781 gcagagtctg aatgaagaat tacaaactgt aaatgctgaa ttacaatcga aagtagatga
      841 tttctcacgg gtgaacaatg atatgaagaa cctgttgaat agcactgaca ttgccacttt
      901 gtttttggac aaaaatttga atattcgcag atataccaat caggcaacta agatatttaa
      961 actaataaat agtgatatag gacgacccat caccgatcag gttacacatt tgaattatcc
     1021 cgaattggaa actgatgcgt tggaagtatt gcgtacgctg gtgtttattg aaaaacaaat
     1081 aactactacc gatggtcgtt ggttttcaac acgcattatg ccgtatcgca ctttcgacga
     1141 taggattgac ggtttagtga ttaccttttt caacatttcc gattataaac aattggaagt
     1201 tgaactcaac gagacacggc aaatacacgg tttgctcctg aattcatcaa ataatgtaat
     1261 tgtgaaatta tctatagatt ggaaaattca ggaatacaat gctgcagctg aaaaattctt
     1321 tggcaaaaaa cgggaggata ttcttaataa aaattattta caactattta tttcggaagc
     1381 agatcaaaag aaaatagaaa aagaattgaa taaaatcctg aaatatgagg aagaagccac
     1441 tttaaaaatg cacgtaatag cagccgatgc taatctacgt gatatagact gggtggttaa
     1501 tgtattgctc aatgcccaga aaacaccaac gggaatcata cttatagcta aaaaaacgtt
     1561 acgttatgaa taacgaaaaa aatcattcag acacagtgtt tctacggatt aaagcagaag
     1621 aaaaactgaa aacgaaacag aacataataa gtgcttccga tactgaaaac gatgctataa
     1681 aactgatgca cgaattgcag gtgcatcaga ttgaactgga aatgcaaaac gaagagctac
     1741 gtaaggcagc tgaagaagta gaaaatgcat tgcggaaata taccatgttg tacgatttgg
     1801 ctcccatggg ctattttaca ctcgagcctg atggtactat aattgaattg aattttgccg
     1861 gtgctgaaat cttgcaagac aaacgttcca gactggtagg taccaacttt aagcttttcg
     1921 tttccaatga atcaacagcg caatttaatg agtttttcag tgatatcttt aaattctctt
     1981 acaaacaatc gtgcaaggta aagttaagcc acgataataa ccagctgggt tatgtttata
     2041 tggagggcat atcaattgat gaagaaaaat gccttttgtc attaattaaa accaccaaat
     2101 tacagaaata aaatttcttt tcaactctgg ttattaaagc ttgtaaccta attgcaattc
     2161 acattgtaat taagttacaa gcctttttta tttcccttgc ccaaatgcca atatattttc
     2221 gggcacagta ccaccatcct aaattg
//
LOCUS       DATDNM010000059         2212 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_968101, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000059 DATDNM010000000
VERSION     DATDNM010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_968101"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1897
                     /locus_tag="VI413_01005"
     CDS             <1..1897
                     /locus_tag="VI413_01005"
                     /inference="COORDINATES: protein motif:HMM:NF016994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="erythromycin esterase family protein"
                     /protein_id="HEY6913226.1"
                     /translation="YIMKNRILILSLLLVLGSAWLTSCSQVIGNDPYNLRFDSDKHNW
                     QPNGSSMLKAIAIDNAQTINGKHPLLIRRNLQNAMWNTASISQRIILSQTITDSVHVS
                     IHNSCGYLTKALLYVWRYNDKEEFVSKDSIDINVDGWHNHAITLPAQNTRILQLEILV
                     HALGQTVPKQELWNQPGFMQFLALDRIEIKIGTKDIAEFATIPEEKMAQPLKLNPNNV
                     VPLTNITSQALQMLKGKKIVALGETTHYNKAIKETTFDIMKSQILYNNCRMVLFEMPY
                     IDGCKYNYYVSGGRITPVFTDIMEGTMRPELSISFRKFLEWLRNYNKDKKQKVMLLGM
                     DDSHSEEFPSELDILDAAITVPSERVILTDLLDYLACGKYIQAEQEAVKQRETLVKLL
                     GDPNYQLLSYDLHLSALNNDQSFRTMGGKYFGSLDYRHLRRDSTMFQITKKYLSWLHE
                     GETVCMYAHFLHLTRNNTLNPRFPLGYYLNKEYGSDYFPLALLVGSGTNTMFQLPVGR
                     VFSQKLVHFDYTLASPPENSLEKAAGKISDQRFYYPLDTTNYNLSYIRAIGSGVDEGR
                     TEKQFKIISPKADMDGFIYIPVGTACTGFPSESSIKENDIRIHDLRYSRLRSFKKDNT
                     YHPKSIN"
     gene            complement(1923..>2212)
                     /locus_tag="VI413_01010"
     CDS             complement(1923..>2212)
                     /locus_tag="VI413_01010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913227.1"
                     /translation="LIKKLFCFIGASAPSPDLLFVLPQKVSKKGNPSADGRFTRKTYA
                     QLADPSTDGPNSLLRRSNRTVLNANFTCFSVHRTRSLVSKLCAIQYLLSFC"
BASE COUNT          739 a          393 c          452 g          628 t
ORIGIN      
        1 atatataatg aaaaacagaa ttttaattct ctcattgctt cttgttttgg ggagtgcttg
       61 gttaacctca tgttcgcagg ttataggcaa tgacccttat aacctccgtt ttgattcgga
      121 caaacataat tggcagccaa acggatcatc aatgcttaag gcaatcgcaa ttgataatgc
      181 gcagacaatc aacggaaaac atcctcttct gattagacga aatcttcaaa atgcgatgtg
      241 gaatacagca tctattagcc aacgtataat attatctcag actataacag actcagttca
      301 tgtaagtatt cataatagtt gcggttacct gaccaaagca ttgctttatg tttggaggta
      361 caacgacaag gaagaattcg tgtccaaaga ctccattgat attaatgtgg atggatggca
      421 taatcatgcc ataacacttc ctgcgcaaaa tacgcgaata ctgcaacttg aaattttagt
      481 tcatgcatta ggtcaaaccg ttccaaaaca agaactgtgg aatcaaccgg ggtttatgca
      541 atttctggca ctggacagaa ttgaaataaa aattggaaca aaagatattg cggaatttgc
      601 cacaataccc gaagaaaaaa tggcacaacc cctaaaactc aatccaaaca acgttgtgcc
      661 tctgacaaat atcacaagtc aggcattaca gatgctgaaa ggaaagaaaa tagttgcgtt
      721 gggcgaaaca actcactaca acaaagcaat taaagaaacc acatttgaca ttatgaaaag
      781 tcagattttg tataataatt gtcgtatggt gttgtttgaa atgccctaca ttgatggatg
      841 taagtataat tattatgtca gcggtggtag aattacaccg gtatttaccg acattatgga
      901 ggggacaatg agaccggaac tgtcaatttc attcaggaaa tttttggaat ggttgagaaa
      961 ctacaacaaa gacaaaaagc aaaaagtgat gttactgggg atggatgata gccactcaga
     1021 ggagttccct tctgaacttg atattttgga tgcagctatt accgtaccct cggaaagagt
     1081 catattgacc gatttacttg attatttggc ttgtggaaaa tatattcaag ccgaacagga
     1141 agctgtaaaa caaagggaaa cattagttaa actgttaggg gacccaaatt accaattgtt
     1201 gagttatgac cttcatctat ctgcactaaa caacgatcag tcctttcgaa caatgggcgg
     1261 caaatacttc ggttcattgg attatcgaca tctaaggcgt gattcaacaa tgtttcaaat
     1321 aacaaaaaaa tacttgtcgt ggcttcacga aggtgaaaca gtatgtatgt atgcacattt
     1381 tttacatttg accagaaata atacacttaa tccaagattt cccttgggtt attatctgaa
     1441 taaagaatat gggtcggatt attttccatt agcactttta gttggcagtg gaacaaacac
     1501 catgttccag ctaccggtag gtagagtgtt ttctcaaaaa ttagttcatt tcgattatac
     1561 attggcttct ccacctgaga acagtttgga aaaagcagcc ggaaaaattt cggatcaaag
     1621 attttactat ccgttagaca ctactaacta taatttaagc tatattcgag caataggtag
     1681 tggcgtagac gagggacgta ctgaaaaaca gttcaaaatt atatccccaa aagcagatat
     1741 ggatgggttt atttacattc cggtgggaac tgcctgtact ggattcccca gcgaatcttc
     1801 aatcaaagag aatgacatta gaatacatga tttgaggtat agtcgacttc gttcgtttaa
     1861 aaaagataat acttaccatc cgaagagtat aaattaacct gtagtgtatt tgattgatat
     1921 tttcaacaaa aagataaaag atattgaatt gcacacagtt tgctaacgag tgacctcgtc
     1981 cggtgaaccg aaaaacaagt gaagttggcg tttaaaactg tcctgtttga gcgacgaagg
     2041 agcgagtttg gtccgtcagt tgacggatca gccaactgag cgtaagtttt tcgagtgaag
     2101 cgtccgtcag ctgacggatt gccttttttg cttacttttt gtggtaagac aaaaagtaag
     2161 tcagggcttg gggcggaagc cccgataaaa cagaataact tttttattag ag
//
LOCUS       DATDNM010000060         5204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_6890, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000060 DATDNM010000000
VERSION     DATDNM010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5204
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6890"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..2621)
                     /gene="feoB"
                     /locus_tag="VI413_01015"
     CDS             complement(138..2621)
                     /gene="feoB"
                     /locus_tag="VI413_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEY6913228.1"
                     /translation="MTTNNTYLSDIKTGDEAIITKVLGHGAFRKRITEMGFVKGEKVI
                     VIKNAPLQDPVEYEIMGYKVSLRRSEAELVEVVSVEDAATLSEIKFEGTIDENKLKVS
                     ALEKGKVINVALVGNPNCGKTTLFNFASGSHERVGNYSGVTVDAKEAMLKKNGYTFKI
                     VDLPGTYSITEYSPEELYVRTHIMEKMPDIVINVLDSSNLKRNLFLTTQLIDMNIKVV
                     IALNMYDELEKKGVMFDYDSLGKMMGIPIIPTVASKGTGVEELFDKLIEVYEDRDPSV
                     RHIHINYGSFIENAIKKIQDVIWKNPKITDKLSSRYVAVKLLETDKTTLAQLEKYNNY
                     DEIKSITEKTIAQLEKEYGERSETIITDAKYGFIDGAMKETYREPKKDRYKIKRELDD
                     MLTHKIWGFPIFLFLMWLMFQGTFTLGSYPMQWIDDGVGLLSEFLQRVMPDGALRDLV
                     VDGIIGGVGGVIIFLPNILILFFFISLMEDTGYMARASFIMDKLMHKIGLHGKSFIPL
                     VMGFGCNVPAIMATRTLDNKKDRILTMIITPFMSCSARLPVYVLLISAIFPQNQGLVL
                     FSIYLIGILLAILTALVMKRIAFAKKEVPFVMELPPYRIPTLKNTSLHMWHKGQQYLK
                     KMGNVILLASILIWALGYFPRNVQYTTNYDSQIESLHASGKLAEKEKEQKIAQLEVNK
                     ESERQEKSYIGQLGHFIEPAIQPLGYDWKMGVSIITGLAAKEIVVSSMGILYQADIKA
                     DENSRSLKDELVAQTHNNGELKGEKVFTPLVSFGFMLFVLIYFPCVAVIAAIKKESSW
                     GWAVFTMVYTTAIAWLVAFATYQIGSLFV"
     gene            complement(2696..3820)
                     /locus_tag="VI413_01020"
     CDS             complement(2696..3820)
                     /locus_tag="VI413_01020"
                     /inference="COORDINATES: protein motif:HMM:NF016830.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HEY6913229.1"
                     /translation="MKVEYRFMIAGVYLLGIFNYTQAQVDNLERKSAFSFEASYVGDV
                     VSNFSGGIKRGTTYLGLANIKAGFNTENANWWKGGIAFVNLANTHGGKPTETLVGDFQ
                     GVSNIEAGNLTFLYELWFKQNFGKVDITVGLQDLNADFAVSENGCLFTNSSFGVHSSL
                     ADNVPSPIFPLTALGANIQWNITDSFLWESAVFDGTPDDFQTNPYNTNWKLSKSQGFL
                     AVTEFQLNKSILKGKNGSYKLGLYYHQHNDTVDIEQKNGGLYFIADQQLTNKLSLFSQ
                     IGVSPKNMNKNNYYYSVGLSYKGLFEKRHDDQFGVAIAYAGINGNAVGSETALEMAYQ
                     FEINEHIYVKPDIQYIINPAGTDIKLDNALVGFIRFGVGF"
     gene            4398..5204
                     /locus_tag="VI413_01025"
     CDS             4398..5204
                     /locus_tag="VI413_01025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913230.1"
                     /translation="MKRALTQAFTKGHENLVCEFNVTLKNNYLHMKKSVNPIFSTFIL
                     PGIFCIAMGVLEAIVVIYLRRIYYPQGFDFPIKFLSPHMLLTEWIREIATIIMLVVIG
                     IMASKDNLLRFLYFLFSFAIWDITYYVALKAFLNWPASLLTWDILFLIPVPWLGPVLA
                     PVICSITMIFFAISFVWLKKTFPAFKIKLYEWGLILLGATFIFITFILDYSTFLMQSG
                     FSIPDTNLVISEFVPAKFSWFLFGAGEAIILYGIGSVIYRTIKKSQYRLR"
BASE COUNT         1609 a         1106 c          815 g         1674 t
ORIGIN      
        1 cttttttgcg gatatttttt atcaaggcat aaattgagta taccataacc aaacctacga
       61 taattaaaac aattattatt tgatccattt ttctatttta ttaatcagtt gcgaaattga
      121 tattttacaa ttcggcatta cacaaataaa ctcccaatct gataagttgc aaaagcgacc
      181 aaccaggcaa tagcagtggt atacaccatt gtaaacactg cccaacccca actcgattct
      241 tttttaatgg cggcaattac cgctacacag gggaaataaa tcaacacaaa aagcataaaa
      301 ccaaaactaa ccaatggagt aaacaccttt tcccctttta actcgccatt attatgagtt
      361 tgagcaacaa gttcatcttt taaagatctt gaattttcat ctgcctttat atcagcctga
      421 taaagaattc ccatggagct taccacaatt tctttagctg ccaacccggt aataatactt
      481 acacccattt tccagtcata tcccaacggt tgtattgcgg gctcgataaa atgccccaat
      541 tgaccgatgt aggatttttc ctgacgttcc gattccttgt tcacttccag ttgagctatc
      601 ttttgctctt tttctttttc ggctaattta ccactagcat gcaaagactc tatttgcgaa
      661 tcataattag tggtatattg tacattacgt ggaaagtaac ccaatgccca aattaatatt
      721 gatgcaagca aaataacatt acccattttt ttcagatatt gctgcccttt gtgccacatg
      781 tgtaaactag tattctttaa cgtcggaatc cggtaaggcg gcaattccat aacgaaaggc
      841 acttcttttt tcgcaaaagc aattcgtttc ataaccaacg ccgtaagaat tgctaacaaa
      901 atgccaatca gataaataga aaacaatacc aatccctggt tttgagggaa aatagctgaa
      961 ataagcaaaa catacaccgg taaccgtgca ctgcacgaca tgaatggagt gattatcata
     1021 gtaaggatac ggtccttctt attatccaac gtacgagttg ccataatagc cggcacattg
     1081 caaccaaaac ccatcaccaa cggaataaac gatttaccgt gcaacccgat tttgtgcatc
     1141 agtttatcca taataaatga ggcacgagcc atgtaacctg tatcttccat taacgatata
     1201 aagaagaaca aaataaggat attaggtaga aatatgatta cgccaccaac acctccgata
     1261 attccatcaa ccaccaaatc acggagcgca ccgtcaggca tcactctctg tagaaattcg
     1321 ctcaacaatc ccactccatc atctatccat tgcatggggt aacttcccaa tgtaaatgtt
     1381 ccctgaaaca tcaaccacat taaaaacaag aaaataggga aaccccagat tttgtgagtc
     1441 aacatgtcat ccaactcccg ttttattttg tagcggtctt ttttaggttc acggtaagtt
     1501 tctttcatcg cgccatcaat aaaaccatat ttagcatcgg taataatggt ttctgaacgt
     1561 tcaccgtatt ccttttcaag ttgagcaata gttttttctg ttatgctttt tatttcatcg
     1621 taattgttgt atttctcaag ttgggccaaa gtcgttttat ctgtttccaa gagctttaca
     1681 gctacataac gtgacgatag tttatctgtt atttttggat ttttccagat tacatcctgt
     1741 atctttttga tggcgttttc aatgaacgat ccataattga tatgaatatg ccgtacactt
     1801 ggatctctat cctcataaac ttctatcaat ttatcaaaca attcttcaac gcctgtacct
     1861 tttgacgcaa cagtaggaat aatcggaatt cccatcattt ttcccaaact gtcataatca
     1921 aacatcaccc cttttttctc cagttcgtcg tacatattca acgcaattac gaccttgata
     1981 ttcatgtcaa tcaactgggt tgtgagaaaa agattacgtt tgaggtttga tgagtccagc
     2041 acatttataa caatgtcagg cattttctcc ataatatgtg tgcgaacgta aagttcttcg
     2101 ggcgaatact ctgtaatgga atatgtgccg ggcaagtcaa caattttgaa agtataccca
     2161 ttttttttga gcatcgcttc tttggcatca accgttacac cgctataatt gcccacacgc
     2221 tcgtgcgacc cggaagcaaa gttgaaaagt gtggtttttc cgcaattggg atttcccacc
     2281 aaagccacat taatgacctt tcctttttct aatgccgata ctttaagctt attttcatca
     2341 attgtacctt caaattttat ctccgataga gttgccgcat cttctacaga tacaacctcc
     2401 acaagttcgg cctcactgcg tcgaagcgat actttatacc ccataatctc atattctaca
     2461 ggatcttgca acggagcatt ctttattacg attacttttt cacccttcac aaaacccatt
     2521 tctgtgatgc gtttgcgaaa agctccgtgc ccgagtactt tagtgattat ggcttcatca
     2581 cctgttttta tatcggaaag ataagtgtta tttgttgtca ttataaaatg atatttacga
     2641 gtatttataa atcacatgca cttaaaacat ttaactacat gactttcgaa tgattttaaa
     2701 aaccaactcc gaaacgaata aagccaacca gggcattatc caattttata tctgtccctg
     2761 ccggattaat tatatattgg atatccggtt tgacatagat atgttcattt atttcaaatt
     2821 gatacgccat ttcaagggca gtttcacttc caaccgcatt tccgttaatc cctgcataag
     2881 caattgctac cccaaattgg tcatcatgtc ttttttcaaa cagaccctta taactcaggc
     2941 caacactata ataatagtta tttttattca tatttttcgg actgacacca atttgtgaaa
     3001 ataaagacaa cttattagtc agctgctgat ctgctataaa atacaaacca ccatttttct
     3061 gctctatatc tacagtgtca ttatgctgat gataataaag tcctaacttg taactgccat
     3121 ttttgccctt caaaatactt ttattcagtt gaaactcggt aacagccaaa aaaccctgac
     3181 ttttactcaa cttccagttc gtattgtatg gatttgtttg aaaatcgtca ggagtgccat
     3241 caaacactgc agactcccac aaaaaagagt ctgttatatt ccattggata ttagcgccta
     3301 acgctgtcaa tgggaatatt ggagaaggaa cattatctgc aagactagaa tgaactccaa
     3361 atgaactgtt tgtaaacaag catccgtttt cgctcacagc aaaatctgcg tttaagtcct
     3421 ggagtccaac tgtaatatcc acttttccaa aattctgttt aaaccaaagt tcgtataaaa
     3481 aagtaaggtt tcctgcttcg atattcgaga caccctgaaa atcaccgact aatgtctcag
     3541 tgggtttacc gccatgtgta tttgccagat taacaaaagc tattcctcct ttccaccaat
     3601 ttgcattttc ggtattaaac ccggccttta tatttgccaa cccgagataa gtagttcctc
     3661 tttttattcc accactaaaa ttactaacta cgtcgcctac ataagaagct tcaaaactga
     3721 aagcagattt cctttctaaa ttgtctactt gtgcttgtgt ataattaaaa atacccagca
     3781 aatacacgcc ggcaatcata aatcggtatt ctactttcat aaatagtaac ttgtcatttt
     3841 attctggtac aaaaataata cagttaaact gattgacata tccctataaa tgctggttat
     3901 actcaaattt agtaactatt agtaggtata actaccccct gatgaactat cggtctattt
     3961 atatccacaa atgttagttt taagttggac attcaattta cgatattacc cggtaaaaag
     4021 accagcagaa gtgcaaatta ctccaagcaa aacaggtttc tatttgacca caaagatact
     4081 tatttataat gattctaaaa gatcaattgc tttagtgaac taaaaaaaca ttaaaatgtg
     4141 tagtcaatgc tcacgctgtt ggctgcacta cccatccatc ttttatccaa tcaatttggg
     4201 caaacataac aaaaggaata atcatacaaa aaatcactga ataccaacga ttattaatac
     4261 ttttacagtt ggtaaaagtc gtaatttgag aagtgataat agaacttctg gcttttcaag
     4321 aattgaaccc aataaaacga gcttcaaaaa catcatcaag acgacatatt tccctttaat
     4381 ctggaaaatg aggttatatg aaacgagcat taacgcaggc gttcacaaaa ggccatgaaa
     4441 atcttgtatg cgagttcaat gtgaccttaa aaaacaatta tttacacatg aaaaagtcag
     4501 tcaacccaat tttcagcact tttattttgc ctggtatttt ctgcatagcc atgggtgtgc
     4561 tggaagcaat tgtagtcatt tatcttcgcc ggatttatta cccacaagga tttgattttc
     4621 cgataaagtt cctttcgcca cacatgctgt taacggagtg gattcgagag atcgcaacaa
     4681 taataatgct ggtggtgatt gggattatgg ccagcaaaga taatttgcta cgttttttat
     4741 acttcctctt cagctttgct atctgggata ttacgtacta tgtggcattg aaagcctttt
     4801 tgaactggcc tgcttcacta ttaacatggg acattttatt tcttattccc gttccctggt
     4861 taggtccggt gcttgcaccg gtcatttgct ccataaccat gatatttttc gcaatcagtt
     4921 ttgtctggtt gaaaaaaact tttcctgcat ttaaaattaa actctacgag tggggattga
     4981 tcctattggg agcaactttt atattcatta cttttattct ggactattct acattcctta
     5041 tgcaaagtgg tttttctatc ccggatacca acttagttat atccgaattt gtaccagcaa
     5101 aatttagctg gtttcttttc ggagcaggag aagcgataat tttatacgga attggctccg
     5161 ttatttatcg gacaatcaaa aagtcacagt atcgactcag gtag
//
LOCUS       DATDNM010000061         8917 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1502133, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000061 DATDNM010000000
VERSION     DATDNM010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 8917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8917
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1502133"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2170
                     /locus_tag="VI413_01030"
     CDS             <1..2170
                     /locus_tag="VI413_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6913231.1"
                     /translation="VITLNSKSYSINEITVISLRATDKSPVAYTNIDKETLSKNNLGQ
                     DIPYMLSSTPSLVVSSDAGTGVGYTNFRIRGTDASRINVTINGIPYNDADEQGAYWVD
                     VPDLTSSIENIQIQRGVGTTTNGAAAFGANINIQTNNYAPKASGEISASYGSFNTQKT
                     TLKASSGLLNKHWAIDARLSSVTSDGYIDRATVDMKSYLVQAGYYSEKTTLKFLTFGG
                     TEKTYHAWNGVPKDSLATHRTYNSCGYMGLDANGQPLYYKDQTDNYIQTNYQLIGIHS
                     FSPIFSINGGLHYTRGDGYYEEYKQEQSLQKYSIPAFDLGGTTISYSDLVRQKKMGND
                     FAGGVFSLNYSKENLIAQIGGAANCYWGEHWGDVIWTKDYPTDIFPKEYYRNEVKKWD
                     ANLYVKANYELIQNLYLNTELQYRRVDYAVNGKNDKWDYNTEQMQQLNIKEPFNFLNP
                     KAGALYKFNTQNECYASFAIANREPTRTNYTDASVNNLPTNETLYDTELGYKFHNDIL
                     SIGANAFYMKYHNQLILTGKLNEIGEPLSENVLSSFRAGIELVGNAKFSDNVRWDGSV
                     TLSENRINNFDEYVDVYDENWEWIDQQKNYVGYTPIAYSPSVTWNNAFTVTYGRFEAK
                     WLEQYVGKQYIDNTGSDERALDAYFVSNLRFSYSLPVKHLRGIDFSLLVNNINDAKYV
                     SNAWTYSYYQGNSSNKQRYSDFGYYPQAGINLLAGVTVKF"
     gene            complement(2541..2614)
                     /locus_tag="VI413_01035"
     tRNA            complement(2541..2614)
                     /locus_tag="VI413_01035"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2578..2580),aa:Ala,seq:ggc)
     gene            2783..3088
                     /locus_tag="VI413_01040"
     CDS             2783..3088
                     /locus_tag="VI413_01040"
                     /inference="COORDINATES: protein motif:HMM:NF025479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4286 family protein"
                     /protein_id="HEY6913232.1"
                     /translation="MLIFNTTFLVSDKAHGPWLKWVREQHIPFMLESEMFSKPQIAKV
                     LSIEEQDGTSYSVQFHVLDMLTLENWHIQYAKVFERNFAEMFGTEVIFFATILEVVD"
     gene            3091..3675
                     /gene="ruvC"
                     /locus_tag="VI413_01045"
     CDS             3091..3675
                     /gene="ruvC"
                     /locus_tag="VI413_01045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009124124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEY6913233.1"
                     /translation="MIKEQIILGIDPGTTVMGYGILKVTGNKTEMLAMGILDLKKYSD
                     HYLKLQRIFARTLSLIDEFHPDHLAIEAPFFGKNVQSMLKLGRAQGVAMSAALYRDIP
                     ITEYAPLKIKMAITGSGSASKEQVADMLRRYLNIPKENMLPQLDATDGLAAAYCHFLQ
                     LGRPASEKAYSGWKDYIAKNEGKVKKNPQPLKES"
     gene            complement(3721..5070)
                     /locus_tag="VI413_01050"
     CDS             complement(3721..5070)
                     /locus_tag="VI413_01050"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY6913234.1"
                     /translation="MKKRILWIVSIILVLAFAYGVYYINLLTPIITGYAAKNLASDVF
                     VGNRTQESVEAIDLNFSFIKYTKNTIDYEKKEVVSRFLWAESKAIYIEGFGCTLVRDV
                     DEATIRNRPYVIVPLPSINVDSVAWPAGDKLADTIPAGVDTDRLNKALAKAFKDSVGT
                     KGTFAVAIAYKNQLIAEKYRDGFSAKNRFLSWSMAKSFTHALVGIMVKKGLLKVDEKA
                     DIPDWKTDKRTNITLENLMHMNSGLEWNEDYGNLSDVTLMLHKSADMAEFAYRKPLVA
                     RPDSVWLYSSGTSNIVSYLIRKRIGNDADYYAFPRRELFNPIGMRSAVFEVDASGTFV
                     GSSYIYATMRDYVRFGLLYMNKGNWLGNQILPEGWVDSAMKQANGSGGKYGSFFWLNQ
                     SGDYPGVPKDLFMCRGHDGQFIYIIPSLQLVVVRTGFSKKEDFDYPKFLAEVVAAIK"
     gene            complement(5225..6496)
                     /gene="serS"
                     /locus_tag="VI413_01055"
     CDS             complement(5225..6496)
                     /gene="serS"
                     /locus_tag="VI413_01055"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005874225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEY6913235.1"
                     /translation="MLTLKYITENTDEVIARLAKKHFDGAAIVAEVVRLDNLRKATQV
                     QADTASAELNSLSKEIGLLMKQGKQDDAAQAKQKTVELKEAIKAFGDQQNDVEQKLNE
                     LLVQIPNLPHASVPEGRHAEDNLVERSGGEMPSLPADAVPHWDLAKKYDLIDFELGVK
                     ISGAGFPVYKGKGARLQRALINFFLDNAMEAGYLEVQPPYVVNAASGYGTGQLPDKEG
                     QMYHCTVDDLYLIPTAEVPVTNIYRDVILNENELPMKNTAYSACFRREAGSYGKDVRG
                     LNRLHQFDKVEIVQIQHPDKSYETLDQMVSYVQTLVEKLELPWRILRLCAGDMSFTSA
                     LTFDFEVYSAAQERWLEVSSVSNFESYQANRLKCRFRTADKKTQLVHTLNGSAMALPR
                     IVAALLENNQTPEGIRIPKALIPYTGFDIIN"
     gene            complement(6682..6951)
                     /gene="rpmA"
                     /locus_tag="VI413_01060"
     CDS             complement(6682..6951)
                     /gene="rpmA"
                     /locus_tag="VI413_01060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEY6913236.1"
                     /translation="MAHKKGAGSSRNGRESESKRLGVKIYGGQFAKAGNIIVRQRGTV
                     HHIGENIGMGKDHTLFALVDGIVEFRKKKDNKSFVSVKPIEVAAN"
     gene            complement(6972..7286)
                     /gene="rplU"
                     /locus_tag="VI413_01065"
     CDS             complement(6972..7286)
                     /gene="rplU"
                     /locus_tag="VI413_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005861907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEY6913237.1"
                     /translation="MYAIVEILGQQFKVEAGKRLFIHRMEEAERGSQVEFDKVLLIDN
                     EGAITVGAPVVEGAKVVCEVLSHVRGEKVIVFHKKRRKGYRKRNGHRQNFTELFIKEI
                     VA"
     gene            complement(7488..8282)
                     /gene="ygiD"
                     /locus_tag="VI413_01070"
     CDS             complement(7488..8282)
                     /gene="ygiD"
                     /locus_tag="VI413_01070"
                     /EC_number="1.13.11.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,5-DOPA dioxygenase extradiol"
                     /protein_id="HEY6913238.1"
                     /translation="MENSTSRMPVLFVGHGSPMYAIEENEFVQAWRDLGGELPKPKAI
                     IAISAHWETRGTQVTAMQNPQTIHDFGGFPQELYQIQYPAIGNPELAKEAIRSITGTQ
                     VLADEKWGLDHGTWSVIRRIYPKADIPIIQMSLDYHKSPKEHYELAKELASFRDKGVM
                     IVGSGNIVHNLRQVAWDRPDDEEYGHDWAIEANDLVKKLISENNHQALIDYKSLGRAV
                     QLAAPTPDHFLPLLYALALKREDEELSFFNDKAVMGSLTMTSVKIG"
     gene            complement(8342..8887)
                     /locus_tag="VI413_01075"
     CDS             complement(8342..8887)
                     /locus_tag="VI413_01075"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEY6913239.1"
                     /translation="MSTTETKLVVGVLDPTHSKIQFKVKHLMISNVLGVFREFEGKAS
                     MIENDFASTQVSLSISTASIDTEAPDRDAHLKSADFFDSENYPKIEFEGKGMTQKDED
                     NFVLNGTLTIKGVTKPVSLDVEFGGIMNDPWGNKKAGFSVTGEINRKDWGMGWNAALE
                     AGGVLVGEKIKLMCDVEFALS"
BASE COUNT         2764 a         1914 c         1544 g         2695 t
ORIGIN      
        1 tgtgataacg ctaaactcta aatcctattc aatcaatgag ataactgtaa tttcacttcg
       61 agccaccgat aaatcaccag ttgcatatac gaatattgac aaagagacgc tttcgaaaaa
      121 caatcttggc caagatattc cttacatgct ttcttctaca ccatcattgg ttgtgtcatc
      181 cgatgccgga accggagtcg gatacacaaa ttttcgtatc cgcggaactg atgcatcacg
      241 tataaacgtg actatcaatg gaattccata taacgatgct gatgagcaag gggcttattg
      301 ggtagatgta cctgacttaa cttcttcaat tgaaaatata caaatacaac gtggagttgg
      361 aacgacaaca aatggtgcag ctgcgtttgg tgcaaacata aatatccaga cgaataatta
      421 tgcaccgaaa gcttccggcg aaatttcagc ttcttatggt tcttttaata ctcaaaaaac
      481 aactttaaaa gccagttccg gcttactaaa taagcattgg gcaattgatg cacggttatc
      541 atccgtaaca tcggatggat atattgacag agcaactgtt gatatgaaat cctacttagt
      601 tcaagccggc tactatagcg aaaaaacgac tttgaagttt cttacatttg gtggaactga
      661 gaaaacctat catgcatgga acggtgtacc taaggattca ttagcgacac atcgcacata
      721 taactcctgc ggatatatgg gattggatgc caatgggcaa ccactttatt ataaagatca
      781 gactgacaat tatattcaaa ctaattatca attaattggg atacacagtt ttagtccaat
      841 atttagcatt aatggaggat tacattatac acgtggtgac ggatattacg aagaatacaa
      901 gcaggaacaa tcgttacaaa aatattcaat ccctgccttt gatttaggtg gaactacaat
      961 aagctacagt gatttggtac gtcaaaagaa aatgggtaat gattttgcag ggggggtatt
     1021 ttcattaaat tactcaaaag aaaatctgat tgctcaaatt ggaggagccg ccaactgcta
     1081 ttggggcgaa cactggggag atgtaatctg gactaaagat taccctacag atatatttcc
     1141 taaagagtat tatcgcaacg aagtaaaaaa atgggatgca aatctttatg taaaagcaaa
     1201 ctatgaatta atacaaaatt tatatttaaa tactgaattg caatatcgca gggtagacta
     1261 tgctgtcaat ggaaaaaatg acaagtggga ttacaacacg gaacaaatgc aacaactcaa
     1321 tatcaaagag ccatttaact tcttaaatcc taaagcagga gcactttaca aattcaatac
     1381 tcaaaacgaa tgttatgcat cctttgctat tgccaatcgc gaaccaaccc gcaccaatta
     1441 cacggatgca tctgtaaata atttacctac aaacgaaaca ctttacgata ccgagttagg
     1501 atacaaattt cataacgata ttttatctat aggtgcaaat gcattctata tgaaatatca
     1561 caatcaattg attttgacag gtaaattaaa tgaaattgga gaaccgttgt ctgaaaatgt
     1621 gttatcaagt ttccgtgccg gaattgagct ggttggaaat gccaaatttt cggataatgt
     1681 tcgttgggac ggctctgtga cattaagcga gaatagaatt aataattttg atgaatacgt
     1741 agacgtttac gatgaaaatt gggagtggat tgatcaacaa aaaaattatg tagggtacac
     1801 accgattgca tattcaccat ctgtcacatg gaataatgct ttcacagtaa cttatggcag
     1861 gtttgaagct aaatggctgg agcaatatgt tggcaaacaa tatatcgaca acacaggttc
     1921 tgacgaacgt gcattagatg catatttcgt ttcaaatctt cgcttttcat attcattacc
     1981 agtaaaacat cttcgtggaa tcgatttctc tttgttggta aacaatataa acgacgcaaa
     2041 atatgtcagc aatgcatgga catattcata ttatcaaggc aatagctcaa acaagcagcg
     2101 atacagtgat tttggctatt atccacaagc aggaataaat ttactggcag gcgtaactgt
     2161 aaaattctaa gaaagattat atgacttatt tcaacggaga cttcaaaaag tctccgttga
     2221 gaattaccta actctcggtt gaaatctcaa aaatctcaac cgagagtttt ttttcacacg
     2281 aattctaagc atctaaaact agcttaaaca tcgataatca catttccaac caggcataga
     2341 tgaaatgaat tgagtttaac caagcttcta ccgaccaaca ctacaacgtt atagtgacat
     2401 acactataac gttgtagtgt atgacacaat aacccgctag tgtcactcac tttttttgct
     2461 aatacaactt cacatagtga attgctgcac caacaaaaaa acgccaacta ctcacgtagt
     2521 cggcgttttg atttatcaag tggagattac cggactcgaa ccggtcacct cgacactgcc
     2581 agtgtcgcgc tctagccaga tgagctaaac ccccgtgctt gattttgaat ttgcagtgca
     2641 aagataagga agtttctgaa attatgagta cttttgttta gaatttttct aacaatagtg
     2701 gcaattatta ttgattttac tccaatataa aacttattgt ttgctatcac aaaccataac
     2761 caattaaact gtaactgtat ttatgctaat tttcaatacc acatttctgg tttcagacaa
     2821 agctcatggc ccatggctca aatgggtccg tgaacaacac attccgttta tgcttgaatc
     2881 tgaaatgttt tcgaaaccgc aaatagccaa agtactttcg attgaagaac aagatggaac
     2941 ctcctattct gttcaatttc atgtgttgga catgctgaca cttgaaaact ggcatatcca
     3001 atatgctaaa gtatttgaac gaaattttgc cgaaatgttt ggaaccgaag tcatattctt
     3061 tgccactata ctagaagttg tggactaaaa atgataaaag aacaaatcat attaggcatc
     3121 gaccccggaa caaccgttat gggttatggc atactgaaag ttaccggcaa taaaacagag
     3181 atgttggcca tgggcatttt agatttaaaa aaatactcag accattacct gaaactgcaa
     3241 cgaatctttg cccgtacact atcacttatc gatgagtttc atccagatca tttggctatc
     3301 gaagcaccat ttttcggcaa aaacgtacaa tcaatgctca agcttggccg tgcacaaggc
     3361 gtagctatgt ctgccgcatt atatcgtgac atccctatta cagaatacgc accactcaaa
     3421 ataaagatgg ccattacagg aagtggaagt gcttctaaag aacaagtggc tgacatgcta
     3481 cgccgctacc tgaacattcc caaagaaaat atgctgccac aattggatgc cactgatggg
     3541 ttagcagccg cttattgcca ttttctacaa ttagggagac ctgcttccga gaaagcatat
     3601 tcgggttgga aagattacat tgccaaaaat gaaggaaagg ttaagaagaa cccccaaccc
     3661 cttaaggaga gttgacaaac acgatacatg cttagttccc ctttaggggt taggggttgt
     3721 tcattttatc gccgccacta cctccgccag aaacttcgga taatcaaaat cttctttctt
     3781 ggagaaaccg gttcgaacga caacaagttg aagcgacgga attatataaa taaattgtcc
     3841 atcatgtcca cgacacatga ataaatcttt cggcactccg ggataatcgc cggattgatt
     3901 gagccagaaa aacgaaccgt attttccacc tgaaccatta gcctgtttca ttgcagaatc
     3961 aacccaacct tcgggtaaaa tttgatttcc aagccagttg cctttattca tataaagcaa
     4021 tccgaaacga acataatctc tcattgtggc ataaatatat gacgagccaa caaatgtccc
     4081 tgaggcatct acctcaaaaa cagcgctgcg cattcctatt ggattaaaaa gctcccgacg
     4141 tggaaaagcg taataatcag catcatttcc aatacgcttg cgaataagat aactcacgat
     4201 attgcttgtt ccggaactat aaagccagac tgagtcaggt cttgcaacta atggtttccg
     4261 ataagcaaac tcagccatat cagccgattt atgaagcatc aacgttacat cagagaggtt
     4321 tccatagtct tcattccact ccaatccgct attcatgtgc atcaaatttt caagtgtgat
     4381 attggttcgc ttatctgtct tccaatctgg gatatctgct ttttcatcaa ctttaagcaa
     4441 tcctttcttc accataattc ccaccaacgc atgtgtaaaa cttttagcca tcgaccaact
     4501 cagaaaacga ttcttggctg aaaaaccatc tcggtatttt tcggcaatca attgattttt
     4561 atatgctatt gccactgcaa atgtaccttt agtgcctacc gaatctttaa aagctttggc
     4621 caaagcttta ttcaatctat cagtatcaac tccggcaggg atagtatctg ccaacttatc
     4681 tccggcaggc catgcaaccg aatccacatt aatcgacgga agtggaacaa taacataagg
     4741 cctgttacga attgtagcct catcaacatc acgaaccaac gtacaaccaa agccttcaat
     4801 ataaatagct ttggattcag cccaaaggaa acgacttacc acttccttct tttcataatc
     4861 aattgtattc tttgtatact taataaatga aaaatttaaa tctattgctt caacactctc
     4921 ctgagtacgg ttccctacaa atacatccga agctagattt ttagctgcat agcccgtaat
     4981 aatgggtgta agtaaattga tatagtaaac tccatatgca aatgcaagta ccagaattat
     5041 tgatacaatc cataaaattc tttttttcat gacaatcaag ttttagattg attaaataaa
     5101 ttcactcaac aaaaatagaa tttatattta atacaccaag agttttcaaa attttagtca
     5161 aataaaaacg gtcggcattc aacgcttgtt gaatgccgac cgtttaggat aatccaatta
     5221 ttgattaatt gataatatca aatccggtat aaggaatcaa tgctttcgga atacgaatgc
     5281 cttccggggt ctgattattt tcaagcaatg cagctacaat acgaggcaat gccatcgcgc
     5341 taccattcaa tgtgtgaacc agttgtgtct ttttatcggc agttctgaag cgacatttca
     5401 agcggttagc ctgatagctt tcgaagttag aaacggagct tacttccaac caacgttcct
     5461 gtgcagcaga ataaacttca aaatcgaatg tcagtgctga agtaaaactc atatcgccgg
     5521 cacaaagacg aagaatacgc catggcaact ccagtttttc caccaaagtc tgaacgtaac
     5581 ttaccatttg atctaatgtt tcgtacgatt tatcaggatg ttgaatttgt acaatttcca
     5641 ctttatcaaa ctgatgcaaa cggttcaatc cacgtacatc ttttccgtac gaaccggctt
     5701 cgcgacgaaa acaagctgaa taagccgtat ttttcatagg caattcattc tcgttcagaa
     5761 tcacatcacg ataaatattc gttaccggaa cctcagccgt tggaattaaa tacaaatcat
     5821 caactgtgca atgatacatt tgtccttctt tatcaggcaa ttgccccgtg ccataacctg
     5881 aagccgcatt tactacataa ggcggttgca cctccagata acctgcctcc atagcgttat
     5941 ccaaaaagaa gttaatcaaa gcacgttgca aacgggctcc ttttcctttg taaacaggga
     6001 aacccgcgcc tgaaattttc acacctaatt cgaagtcaat caaatcatat tttttagcca
     6061 aatcccagtg cggaactgca tcagcaggca aacttggcat ttcacctcct gagcgctcaa
     6121 ctaagttatc ttcagcatgt cttccttctg gtactgaagc atgtggcaaa ttgggaattt
     6181 gaaccaacaa ttcattcagt ttttgctcaa catcattttg ctgatcacca aatgctttga
     6241 tagcttcttt taattcaacc gttttttgtt ttgcctgagc agcatcatcc tgcttaccct
     6301 gtttcatgag caaaccgatc tctttcgaca agctgtttaa ttcagccgat gcagtatctg
     6361 cctgaacttg agttgcctta cgcaggttat ctaatcttac tacttcagct acaattgctg
     6421 ctccatcgaa atgttttttt gccaaacgag caataacctc gtctgtattt tcagtgatat
     6481 acttgagtgt caacatattt taatttacaa tttattcatc cgtcagtgga cggacaagtt
     6541 ttacaattta cgattgaaat atcagatagt caaaatcccg gctctaatat tttgttcctt
     6601 cggctgaata aaaaaatctc ccgcaatttt acatggatgt aaaacaacag gagatttatg
     6661 tgtgttgaat atcgactgag cttagttagc agctacttcg ataggtttta cagaaacaaa
     6721 tgacttgttg tctttctttt ttctgaattc tacaattccg tcaaccaatg caaacaaagt
     6781 gtggtctttt cccatgccaa tgttttcacc aatgtgatga actgtaccgc gttgacgaac
     6841 tatgatgtta cctgctttag caaattgacc accgtaaatt ttaacgccaa gtcgtttgct
     6901 ttccgattca cgaccgtttc ttgagctacc cgcccctttc ttatgtgcca ttttcttcta
     6961 atttttatcg gttaagctac aatttcttta ataaacaatt ctgtaaagtt ttgacggtga
     7021 ccgttgcgtt tgcggtatcc tttgcgacgt tttttgtgga aaacgattac tttttcgcca
     7081 cgaacgtgcg ataatacttc acatactact tttgcacctt caactaccgg agcaccaaca
     7141 gtgatagcac cttcgttatc gattaacaat actttgtcaa attcaacctg agagcctctc
     7201 tcagcttctt ccatgcgatg gataaacagt ctttttccgg cttccacctt gaactgttgt
     7261 cccaaaattt ctacgattgc gtacattatt ttaatgactt ttctgattac atcgggaagg
     7321 tgagttgcct acggcattgc ttcttgttta ccttatccga aaagagctgc aaaaatacaa
     7381 ctttattttt aatatacaaa gaattactgc gaaattattt tgaatcatct cccattttaa
     7441 ataaactctg gtaattagaa cattagacac attttacaaa ctgaaattca acctattttc
     7501 actgaagtca tggtcagtga ccccattaca gctttatcat tgaaaaacga aagttcttca
     7561 tcttcacgtt tcaatgccag cgcataaagc aagggcaaga aatgatcggg tgtcggagcc
     7621 gccagctgca ctgcgcggcc taatgatttg taatcaatta atgcctgatg attattctcc
     7681 gatatcagtt tcttcactaa atcattagcc tcaatcgccc aatcgtgacc atattcttca
     7741 tcatcaggcc tatcccatgc cacctgacgc aaattatgaa cgatatttcc acttcccaca
     7801 atcattaccc ccttatcacg aaacgaagca agctcttttg ccagttcata atgttctttg
     7861 ggcgatttat gataatccag gctcatttga attattggaa tatctgcttt tggataaatt
     7921 cgtcgaatca cactccatgt gccgtgatcc agtccccatt tttcgtcagc taaaacctgc
     7981 gtaccagtta ttgacctgat agcttctttt gctagctctg ggttgcctat ggcaggatac
     8041 tggatttggt acaactcctg tggaaagccc ccaaaatcat gaatcgtttg gggattttgc
     8101 atagctgtaa cctgcgtccc acgagtttcc cagtgagcag aaattgcaat aattgctttg
     8161 ggtttaggaa gttctccacc caaatctctc cacgcttgca caaattcatt ttcctcaatg
     8221 gcatacatcg gacttccatg acctacaaac agcacgggca tacgactcgt gctgttttcc
     8281 atatttttta gattcatacg ttttacttga atcagttcac actatttgtc aatttcgata
     8341 tttagcttag ggcaaattca acatcacaca taagtttaat tttttcacct accagtactc
     8401 caccggcttc gagtgccgca ttccagccca taccccaatc tttacggttt atttctcctg
     8461 taactgaaaa gccagccttt ttgtttcccc atgggtcatt cataatacct ccgaactcta
     8521 catccaacga taccggttta gttacacctt taatggtcag tgttccgtta agcacgaaat
     8581 tatcctcatc tttctgcgtc attccttttc cttcgaattc aattttagga taattttcag
     8641 aatcgaagaa atcggcactt ttcaagtgag catcccgatc aggtgcttca gtgtcgattg
     8701 atgcagtgct gattgacaaa ctaacctgtg tcgatgcaaa atcattttcg atcatgcttg
     8761 ctttcccttc aaattccctg aaaactccca atacattgga aatcataaga tgttttacct
     8821 tgaactgtat tttgctgtga gttggatcaa gaacacctac tactaatttt gtttctgttg
     8881 tgctcataat tttttgtttt aaaatttttg ttgatta
//
LOCUS       DATDNM010000062         3374 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_541407, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000062 DATDNM010000000
VERSION     DATDNM010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3374
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_541407"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            461..3205
                     /locus_tag="VI413_01080"
     CDS             461..3205
                     /locus_tag="VI413_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009038046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HEY6913240.1"
                     /translation="MKKQHLFLIFLFPAFLFSAEIPVIQFPTNLPQGFPRTITPENTK
                     ESVVKMIQTEAWAKQIFDKIKERTDKYVSLTAKDPDWLLSRLQMYWNSHSTDVYIRGE
                     VFAYAGGAKVPVPTVRFTGARAANTIYGRPKLEDITPFMDDERGLWLPNNSRVGQPYE
                     WAEPSKTGTIIQSMNREIMGIARDAAFVYWITDDEKYAALARGVFDTYMTGMYYRNVP
                     IDLNNGHQQTLVSLSSFEVIHEDIITELVPLYDFLREDLLKNKTANMDIYGATFKKWA
                     DNLIQNGVPHNNWDLFKSNFILSIALVLDDNPAYKDGKGRQYYIDYVLNKSSIRQWSL
                     PRLMDYGFDKKNGIWAECPGYSINVVADFANFIAWFDGNFNYDLLPQFPVIAKAVSAV
                     PRYLFPNMNTVGFGDTHPGHLRTDLYERMIANAQRYGKREQEVLFTRLLKMVEPHYRN
                     DEKPKAVKAEVASFFENKSLKLDPTIPAGKPDDFISPTFWAPNVSWFTQRNGNDPQHS
                     LMISENASEGNHMHANGISMELYGKGYTLAPDMGIGSGYFALNYAEYYGQFPAHNTVC
                     VNGISSYPIMKSNHAFELRSCYPVPESKTGNYNNISYSDVYFREPESCADQTRLLSIV
                     TTGKETGYYVDIFRSKKVDGNDKMHDYFYHNLGQKMTIMDTNGDSLNLKPTEELAFAG
                     AHLYAYSYLFNKKSVVTDKDVKVTFTMVRPNGDDIYMNMWMKGEKDREIFSALAPMCE
                     GLSRTPGMPYNVKETPTLTYVARQSGEAWTRPFVSVYEPASKNEPSNIATVSFFAAEN
                     ASKEFVGIKVESKNGRTDYIFSNSNATDKAIYNGMSAQSTYSIIGIEKNGDCVLFMGN
                     GTLLANKEVEIETKQAGNVCVEKKDGNWFYTAGANCKITIKGKCYKLPASGYKAIAKL
                     "
BASE COUNT         1019 a          618 c          749 g          988 t
ORIGIN      
        1 tattaccaat gagcctgaac cagggcattt atttagtaaa actttcgcag gacaatacta
       61 ctcatacagt aaaagtgtcg gtattataat tcacaaatga aaggggaagg ctctctttcc
      121 ctttcatttt ttatattttg gctttataag aagcaataac ttgtatcaac tctgattttt
      181 tgcattgtat caactcagag ttgcggttta taagattgaa taaattattg gttgtttaaa
      241 atagttcact atcccgttat tagtttttaa aggtaggaaa gaatgtttgc gctcagcaat
      301 gagtcaggca ttcttttttt atttgttgtg tgtatagtca acagaaacag accagtcatc
      361 aagtgttaat tttgagtatt tattgttatt tcaaaattaa gtgtttattt tgttccattc
      421 gtattagata cagaacaaga ttatacgata gatgatttat atgaagaaac aacatttatt
      481 tctgattttt ctgtttcctg catttctctt ttctgcggaa atacctgtta ttcaatttcc
      541 cacaaatctt ccgcagggtt tcccgcgaac cattacacct gaaaatacca aagagtcggt
      601 ggtgaaaatg attcaaacag aagcatgggc aaaacagata ttcgacaaga taaaagagag
      661 gactgataaa tatgtcagcc tcactgccaa agaccctgac tggctactgt cacgcctgca
      721 aatgtactgg aattcacatt caactgatgt atatatccgg ggcgaggtat ttgcctatgc
      781 cggtggagcc aaagtgcctg tgccgacagt tcgttttaca ggtgcacgag ctgcaaacac
      841 catttatggt cgaccgaagc tggaagatat cactcctttt atggatgatg agcgtgggct
      901 atggttaccc aataacagca gagtgggtca accatacgag tgggccgaac cttccaaaac
      961 aggaactatt attcagtcca tgaatcgtga aataatgggt attgcacgcg atgcggcttt
     1021 tgtttactgg attaccgacg acgagaaata tgcggctttg gcccgtgggg tttttgatac
     1081 ctacatgacc gggatgtatt accgcaatgt gcccattgat ttgaataatg gtcatcagca
     1141 aacgttggtc agcctttcgt ctttcgaagt gattcacgaa gatatcatta cagagctggt
     1201 tccgttgtac gatttcctac gcgaagattt gctgaaaaac aaaactgcca acatggatat
     1261 ttatggagct acttttaaaa aatgggcaga taacctgatt cagaatggcg tgcctcacaa
     1321 taactgggat ttgtttaaat cgaatttcat tttgtctatt gctttggttc tggatgacaa
     1381 cccggcatac aaagatggca aagggcgtca gtattatatt gattatgtgc tgaataaatc
     1441 cagtatccgc caatggtcgt tgccccgctt gatggattat ggttttgata aaaagaacgg
     1501 gatttgggct gaatgcccgg ggtacagcat aaatgtggtg gccgattttg ccaacttcat
     1561 agcgtggttt gatggcaatt ttaattacga cctgcttccg caattcccgg ttattgccaa
     1621 agcggtgagt gctgtacccc gatatctttt tccgaacatg aacacagtag gttttggcga
     1681 tacgcatccg gggcatttac gcaccgattt gtacgaacgg atgattgcca atgcacagcg
     1741 ctatggcaaa cgtgaacagg aagtgctgtt taccagactc ctgaaaatgg ttgaacctca
     1801 ctatagaaat gatgaaaagc ctaaagcagt gaaagcggaa gtggcttcgt tttttgagaa
     1861 caagtcactg aagttggacc cgactattcc tgccggaaaa ccggacgact tcataagccc
     1921 gactttttgg gcgccaaatg taagctggtt tacgcaacgg aatggtaatg acccacaaca
     1981 tagcctgatg atttctgaaa atgcatcgga aggtaaccac atgcatgcca acggaatttc
     2041 tatggaactt tatggcaaag gctataccct tgctccggat atgggaattg gaagcggcta
     2101 ttttgcattg aattatgccg agtattacgg gcaattccct gctcataaca cggtttgtgt
     2161 aaatggtatt tccagctatc cgattatgaa aagcaatcat gcatttgagt tgcgaagttg
     2221 ctatcctgtg cccgaatcga aaacaggcaa ctacaacaat atcagctatt ctgatgtgta
     2281 ttttcgcgaa ccggaatcgt gtgccgacca aacccgcttg ttgagcattg taacaacagg
     2341 caaagaaaca ggctattatg tggatatttt ccgttccaaa aaggtagatg gcaacgataa
     2401 aatgcacgat tatttctatc acaacctggg acaaaaaatg accattatgg atactaatgg
     2461 agattcattg aatttgaagc caacagaaga actggctttt gccggagcgc atttgtatgc
     2521 ttattcttac ctgttcaaca aaaagagcgt tgtaactgac aaggacgtca aagtaacatt
     2581 tacaatggta cggcccaatg gcgatgatat ttatatgaat atgtggatga aaggggagaa
     2641 ggaccgcgaa attttctcag cattggcgcc tatgtgtgaa ggcctgagcc gcactccggg
     2701 aatgccatat aatgtaaaag aaactccaac tctcacttat gtagctcgcc agagcggaga
     2761 agcctggact cgtccgtttg tgtctgttta tgaaccagcc agtaaaaatg agccttcaaa
     2821 tattgcaacg gtttctttct ttgctgcaga aaatgcttcg aaagagtttg ttggaataaa
     2881 agtggagtcg aaaaacggca gaacagatta tattttttca aactcaaatg caacagataa
     2941 agcgatttat aatggcatga gtgcgcaatc aacttattca attattggta tcgaaaagaa
     3001 cggtgattgt gttttgttta tggggaatgg cacgttgctg gctaacaagg aggtggaaat
     3061 tgaaacaaaa caagcaggta atgtatgtgt tgagaaaaag gacggaaact ggttttacac
     3121 agctggtgcc aactgtaaaa tcacgattaa aggaaaatgt tataagttgc cggcttcagg
     3181 gtataaagca atagcaaaac tttgaaatgt atttctttgc tgttccttta tatatttaat
     3241 gtgaaatgag ttgaaagtag cgtagtgagc caaatcaagt gtgtaccgca tttatagaca
     3301 tgttaaattt ttgaatatga attaggtgta actttatttg ctgattagaa attgaagaaa
     3361 cttaataact gatt
//
LOCUS       DATDNM010000063         2095 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_541536, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000063 DATDNM010000000
VERSION     DATDNM010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_541536"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            946..1260
                     /locus_tag="VI413_01085"
     CDS             946..1260
                     /locus_tag="VI413_01085"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6913241.1"
                     /translation="MIKNGNIETNDWIRLELEVIRAENKRIIEQNDEIIRLLRAGHSM
                     PPATEKIYTTEEVMAMLQLSRRTLLTYRKTGKINYKQEGNSIRFLQSHIDDFMRNEGK
                     MN"
     gene            1484..>2095
                     /locus_tag="VI413_01090"
     CDS             1484..>2095
                     /locus_tag="VI413_01090"
                     /inference="COORDINATES: protein motif:HMM:NF024783.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEY6913242.1"
                     /translation="MKLGQSLWTREELILAINLYCKLPFGKMHKTNAAIIELAELIGR
                     TPSSVALKLGNFASFDPTLKARGIKGASNASKLDKAIWDEFYNNWDEALLQSEELLAQ
                     KQHSTIEKINEIDLDQLPKDGKEKERVIKTRVNQSLFRKIVLATYNNQCCITGLAQPE
                     LLIASHIVPWSKNESIRLNPMNGLCLNALHDKAFDSGLIAIRPD"
BASE COUNT          735 a          379 c          392 g          589 t
ORIGIN      
        1 agaattagtc tcttagccac ggagtggcta aatgtgcata ccccccggta agcgaagcgt
       61 aaccggggga taatggaaat aaatgatcat acattcgatt ttcagtcgga ctagtcggac
      121 taaaaatcga atgattataa aatatggtgg ggctgaatag tctcgatttt cagttcaacg
      181 gacattttag cgaaaataac gtgctaacct tgcagaggat ctagaactga agctattaga
      241 ctgacaattt aaaaataaca gatacacaac aaaacagaca atgaaatacg acaactatca
      301 ccccgaggac taaagctaag agcatttgac ataatggaac tttattaaaa tatagcgggt
      361 tttcattaaa atacagcgat tttgtcgctt gttttctctg tttatttgcc cggtaattgt
      421 gctgttgttt aattctcgtt taattctcgt ttaatttttg ctgcgattaa caaaaaatgc
      481 agtatatttt tacagcggat ttatcactta ttttctttga ctatttaccc cggtaccggg
      541 agcgggaaaa gacgaaatag ctgtacaacg aaacacgaaa aaaaaccgaa aaaagtgtcc
      601 tttgaaaaca gtttccgaaa agatagtttt gaagccaaaa atcagtgcca ttttgtcact
      661 gttttttggt gataaaaatt caaacaatgt actttgccta acgaccgggg ctaaaggaat
      721 tttcaggcaa aaaagaaaaa atgacactaa aaagtatgct cacttttgaa acgaacaact
      781 atataattga ttatcaacac aataaaatag atgtttgttt taaccaattc ttgtcttttt
      841 ttttcattgt cccaaattgt agttttggag cgaaaaaaca ggtaacagat ccaatgattt
      901 atatcttata aaaattgata tacgggtcaa cccaaaaata actgcgtgat aaaaaacgga
      961 aacatagaaa ccaatgattg gattcggctc gaattagaag taattcgtgc cgaaaacaaa
     1021 cgcatcatag agcaaaacga tgaaattatt cgtctgctcc gtgccggtca ttctatgcct
     1081 cctgctaccg aaaaaatata taccactgaa gaagtaatgg caatgctgca actatcccgc
     1141 cgcacgctgc tcacctaccg gaaaacgggc aaaatcaatt ataaacagga aggaaactcc
     1201 atccgcttcc tgcaatcgca tatcgatgat tttatgagaa atgaggggaa gatgaattag
     1261 agggaaataa gtcagaattt attccatgat tgctgagttc caaacataca tcatattgat
     1321 tatcaaaaca agaacacaca aaccgtacag aacatttgcg aaactttaaa aagtttaagt
     1381 aaaatacatg gtttttaaga gaaatttagt agatttgcat ttcttacaat tttaataaaa
     1441 acagcacatc aaacgattag aattttaaac taaaattttt agtatgaagc ttgggcaatc
     1501 actctggaca cgtgaagaat taattttagc gattaatctc tattgtaagt tgccgtttgg
     1561 taaaatgcat aaaaccaatg ctgccattat tgaattggct gaactgattg gccgtacacc
     1621 ttcatctgta gccttgaaac tgggtaactt tgccagtttc gacccgacct taaaagcccg
     1681 aggaattaaa ggtgcttcca atgctagtaa attggacaag gctatttggg atgagtttta
     1741 taacaactgg gacgaagctt tgttgcaaag tgaagagttg ctcgcacaaa agcaacactc
     1801 cacaatagaa aagatcaatg aaattgactt ggatcaactc cctaaagatg gcaaagaaaa
     1861 agaacgagta attaaaacaa gggttaatca atcgcttttc cgaaagattg ttttggctac
     1921 ttacaataat caatgctgca ttactggttt ggcgcagcca gaactactga tagccagtca
     1981 tattgtgcct tggagtaaga acgaatccat ccgcctaaat ccgatgaacg ggctttgttt
     2041 gaatgcacta cacgataagg catttgattc aggcttaatc gctattcgcc ccgat
//
LOCUS       DATDNM010000064         2634 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1502570, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000064 DATDNM010000000
VERSION     DATDNM010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1502570"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1178
                     /locus_tag="VI413_01095"
     CDS             <1..1178
                     /locus_tag="VI413_01095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016273417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6913243.1"
                     /translation="AIPILQQLHKLRGNEKLHRKIKVLVVTPTRELAIQIGESFAAYG
                     RFMNFRHTVIFGGVPQNPQVNTLKAGVDILIATPGRLLDLQSQGYIKLNDLSIFVLDE
                     ADRMLDMGFIHDVKKLIKIIPAKRQSLFFSATMPDSIRVLAGTILTNPDEVAVTPVST
                     TAETIQQEMYYVAANDKKDLLIHLLQDKSIKTALVFTRTKHGADKIQRILVKANIKAE
                     AIHGNKSQNARQNALRNFKERSTRVLVATDIAARGIDIDDLNLVINYEIPNIPETYVH
                     RIGRTGRAGLDGKAISFCDEEELEYLRDIQKLISIEIPLITDQPYAADYVLTDKRSKV
                     KPKVATRGKGSRIDPGKGKRRSGTDKNVSKPQSSKSTVLNSPKTENAVKRVFFRKES"
     gene            complement(1338..>2634)
                     /locus_tag="VI413_01100"
     CDS             complement(1338..>2634)
                     /locus_tag="VI413_01100"
                     /inference="COORDINATES: protein motif:HMM:NF027952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YDG domain-containing protein"
                     /protein_id="HEY6913244.1"
                     /translation="NITYGTALSATQLNATVTEGGGALTYTPGLGTVLSAGTHILKVT
                     AAATENYTEVSKEVTIVVDKADPVITIESSSTNSTYGDSVTFTVTASGLGGIAPTGDV
                     IFRCVTTVLGTNTLILGKANFTTSKLEADDTHSPNALYLGDDNYNSATSNYLSHYVSK
                     TTLTISGITIESKVYDGTTIGHLSSTGLLHGIVNGDNVTLDTTNASIEFADRNVGSNI
                     PVTVSGLTLAGSGSHVRSYILTQPDGLTGNITPKPITISAENKSKLFDGAIYSDAYTV
                     SFSGFVNAENETILNGSLIFTGEATTATSAGLYDIIPSGLTASNYEITFINGKLNIID
                     VSSNTNNIVDTKLAVTAYPNPAATDHINFKFRLKEASKVSIDIFDTKGLLVDCIFNEN
                     IQDNDIHIVTYKTNLPTGIYIYRLKSGPEVALGKLMIVK"
BASE COUNT          801 a          512 c          517 g          804 t
ORIGIN      
        1 ttgccattcc tattctacaa caactgcata aactcagagg taacgagaaa ttgcatcgta
       61 aaataaaggt attagttgta actccaacac gcgaactggc tattcagatc ggtgaaagtt
      121 ttgcagctta cgggcgtttt atgaattttc gacataccgt aatttttgga ggcgttccgc
      181 aaaacccgca ggtgaatacg ctgaaagccg gagtagatat tttgatagct acgcctggac
      241 gtttgctcga tttgcaaagc cagggataca ttaagttgaa cgacctgagt atttttgtgc
      301 tcgacgaagc cgaccgtatg ctcgacatgg gttttattca cgacgtaaaa aagctgataa
      361 aaattattcc agcaaaacgc cagtcccttt tcttttcagc aaccatgccc gattcaattc
      421 gtgtattggc cggaacaatt ttgaccaatc cagatgaagt ggctgttacg ccagtatcaa
      481 caactgctga aaccattcaa caggaaatgt attatgtagc tgcaaacgac aaaaaagatt
      541 tgttgattca cttgcttcag gacaaatcaa ttaaaacggc tttggttttc acccgtacta
      601 aacatggtgc cgacaaaatt caacgaattc ttgtaaaagc aaacatcaaa gcggaagcca
      661 ttcatggtaa taaatcgcag aatgcacgcc agaatgcgtt gcggaacttc aaagaacgtt
      721 caacccgtgt gctggttgct actgatattg cagcgcgagg tattgatata gacgatttaa
      781 atctggttat taactacgaa ataccaaaca ttccggaaac ttacgttcac cgcattggcc
      841 gtacgggcag ggcagggctc gatggcaaag ctatttcgtt ttgcgatgaa gaggaacttg
      901 agtatttgcg tgacattcaa aaactgattt cgatagagat acctttaatt accgaccagc
      961 cttatgctgc cgattatgtg ttgactgata aaaggtctaa ggtcaaaccc aaagttgcca
     1021 cacgtggcaa aggatcacga atagatccag gcaaaggtaa acgtcgcagt ggaactgata
     1081 agaacgttag caaaccacaa tcgtcaaagt ctacggtttt aaattcccca aaaacggaga
     1141 atgctgtcaa aagagtattt tttagaaaag aaagttagta aatctgaatt tacaattgcc
     1201 tgaaaaaata aaacccaacc aaatcaaatt ggttgggttt tattatgaaa atcccaaata
     1261 tttactttcg cttgttttta cggtattaat aatcttgtat ttgcttggcg aaattgaata
     1321 atttagttga ttttaaatta cttgactatc attagtttgc ctagggctac ttcaggtccg
     1381 gatttcaatc tgtaaatata tattcctgta ggtaagttgg ttttgtatgt aacgatgtgt
     1441 atatcattgt cttgtatatt ctcattgaaa atgcaatcaa caagcaaccc tttcgtatca
     1501 aaaatgtcta tactcacctt ggaagcctct ttcagacgga atttgaagtt tatatgatct
     1561 gttgcagccg gattaggata agcagttaca gccaatttag tatccacaat attgtttgta
     1621 ttggatgaaa catcaatgat attcaatttg ccatttataa aagtaatttc ataatttgag
     1681 gcagttagtc cacttggaat aatatcatat aatcctgcag atgttgcagt tgtagcctcg
     1741 ccggtaaata tcagacttcc attcaaaata gtttcatttt cggcgtttac aaaaccactg
     1801 aaactaactg tgtaagcatc tgagtatata gcaccatcaa ataatttaga cttattctct
     1861 gctgaaattg ttattggttt tggagttata ttgccagtca atccatcagg ctgtgttagt
     1921 atatagcttc ttacatggct accggagcca gccaaggtaa gaccagaaac agttacaggt
     1981 atgtttgagc ctacatttct atcggcaaat tcaatggatg catttgtcgt gtctaaagtt
     2041 acgttatcgc catttacaat cccgtgtaat aatcctgttg acgaaagatg cccgatagtt
     2101 gtgccatcgt aaactttaga ctcaatggta attccagaaa ttgtcaatgt cgttttcgat
     2161 acataatgcg acaaataatt ggatgtggca ctattgtagt tatcatcacc aagatataat
     2221 gcattaggag aatgtgtatc atcggcttcc agtttactgg tagtgaaatt tgcttttcct
     2281 agtatcaaag tgtttgtacc aagcactgta gtcacacacc taaatattac atcgccagta
     2341 ggagcaatgc cccctaatcc tgatgctgta actgtgaagg tcacagaatc gccataagtt
     2401 gaatttgtac tggaggattc aattgtgatt accggatcag ctttgtccac cactattgtt
     2461 acttctttac ttacttccgt ataattttct gtagcagctg cagtaacttt caaaatatgt
     2521 gttccagcac tcaacactgt gcccagacca ggggtgtaag ttagtgctcc tcctccttcc
     2581 gtaaccgttg cattcaattg agttgcgctt aatgcagttc cgtaggtgat attc
//
LOCUS       DATDNM010000065         2487 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1502612, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000065 DATDNM010000000
VERSION     DATDNM010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2487
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1502612"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(123..284)
                     /locus_tag="VI413_01105"
     CDS             complement(123..284)
                     /locus_tag="VI413_01105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913245.1"
                     /translation="MNENKPAINYTSPDLSKMKKVIIDAKTVIYIPIDADAEAAKEAY
                     LLRVSAKKP"
     gene            524..715
                     /locus_tag="VI413_01110"
     CDS             524..715
                     /locus_tag="VI413_01110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004570569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HEY6913246.1"
                     /translation="MNKGTVKFFNESKGFGFIKDASSTKEYFVHSTGLQDRIQENDEV
                     SFEIVEGKKGPNAVNVKLV"
     gene            981..1571
                     /locus_tag="VI413_01115"
     CDS             981..1571
                     /locus_tag="VI413_01115"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-70 factor"
                     /protein_id="HEY6913247.1"
                     /translation="MDLTSKEILEKVLSGDELSFERIYRHYYPRLNYFARQYLFDSES
                     SKNIVQDVFMELWVNRNTLHMNTNLQAWLFTVTKNKSLKTISHLKSSKNYSSYIISRQ
                     LDINQKALSDLDTSYFVFEELEKQVQQSLEKLSPACRKVFEKSRFENKKNREIAEEMK
                     LSIKTVEAHISKVLRLLKADLKDYLPLFYCLFLFQE"
     gene            1639..>2487
                     /locus_tag="VI413_01120"
     CDS             1639..>2487
                     /locus_tag="VI413_01120"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEY6913248.1"
                     /translation="MNQEKLLGYITGKITSEKEIVEILDWIEISSEHQKRYSELKNLW
                     VISTIADSELLETPPFLFPKTKKLHSNNKFPRSWISYAAVFALAFILGSLTLLLVNRN
                     SQADLSSKYNLIEVPYGKQSQVTLYDGTKVWLNSGTTFRYPVSFSDKLREVYMEGEAF
                     FEVAKNAEQPFVVNAGQLKIQVLGTRFNVCAYPDDQQFSATLDEGSVMAINISNGKTL
                     RLNPGEQVILDRETNLMNHISVDTALYTSWKENMLKFEDAPFEEVIKKMERWYDVKIK
                     VDPSINT"
BASE COUNT          875 a          383 c          433 g          796 t
ORIGIN      
        1 aggtgatttt taggagtaat caatgatata acaatagttt tttctgttgt taaagtaatt
       61 ttaaattatc atttcttcag aaaaaactat tgttgacttt atactttcag gtgatcgttg
      121 tattacggct ttttagcgct cacgcgtaac aagtaagcct ctttagctgc ttcggcgtca
      181 gcatcaatgg gaatatatat gactgttttc gcatcaataa ttactttttt catctttgat
      241 aagtcaggag aagtataatt gatggccggc ttgttttcat tcatgttgtt ttttcctttc
      301 aataattatc aaatgatatc ttttttcctg aaaagattaa ataaacttca ggattaagat
      361 aaatggtatg gacctataaa tttcatttgg tctataaccc tcaaatgtag ctattatata
      421 acagaaaata ggattatttt aaagataaat gaaaatcgtt aagaaataag caaataatct
      481 cgataattaa tggtatattg gtccatcata taaatacaac atcatgaata aaggtacagt
      541 aaaatttttt aacgagtcaa aaggatttgg attcattaaa gacgcaagtt caacaaaaga
      601 gtattttgta cattcaacag ggctccagga caggattcag gaaaacgatg aggtttcatt
      661 tgaaatcgta gaaggcaaaa aaggaccaaa tgcagttaat gtcaagctgg tttagtttga
      721 caatgcacta tgatactcaa tttagtcctg ccattaggcg ggactttttt ttataaataa
      781 ttatcccata ttcaccggta agtagtaaaa agcaattatt ttttcttttt acattccaat
      841 tcactaaacc tctcttacaa tatcttaaac attaataatt atttatgtat tttttggaat
      901 attacctaat acatatctat atatttctat tatatttaca ttaaattcaa gaggttatag
      961 taccgatata aaccctgaac gtggacctga ctagcaaaga gatattggaa aaagtattat
     1021 ctggggatga gctatcattt gagagaatct accgacatta ttatccaagg ttaaattact
     1081 ttgcaaggca atatttattt gattcagagt catcaaagaa catcgttcag gatgtgttta
     1141 tggagctgtg ggttaatcgc aacacgcttc atatgaatac taatctgcaa gcatggttgt
     1201 ttactgttac caaaaacaaa tcgttaaaaa caatcagcca tttaaaatct tcaaaaaatt
     1261 acagtagtta tataatatcc agacaattgg atatcaatca gaaggcatta tctgatttag
     1321 atactagtta ttttgttttt gaggaattgg aaaaacaagt tcaacagtca ttggaaaaac
     1381 taagtcctgc ctgtcgaaaa gtatttgaaa aaagccgctt tgagaataaa aagaacaggg
     1441 agattgcaga agaaatgaaa ttaagtatta aaactgtaga agcccatatt tcgaaagtgc
     1501 tgcgactttt aaaagctgac ttaaaagatt atcttccatt gttttattgc ctttttctct
     1561 ttcaagaata aaaaaacagt cttttggtgt aagggtattt gcagttgatt gggttatact
     1621 atcaaatctt aatcagcaat gaaccaggaa aagttattgg gctacattac aggtaaaatt
     1681 acctctgaaa aagagattgt tgaaatcctt gattggattg aaatatcatc agagcaccag
     1741 aaaagatatt cagagttgaa aaacctttgg gtaatttcaa caatagctga ttcggaatta
     1801 ttagaaacac ctcccttttt atttccaaaa acaaaaaaat tacattcgaa taataagttt
     1861 ccaaggtcat ggataagcta tgcagcagta tttgcactgg cttttatatt gggttcactt
     1921 accctattac ttgttaacag aaacagccaa gccgatctgt cctctaagta taatttaata
     1981 gaagttccct atggaaagca atctcaggtt actttatacg atggcacaaa agtatggctt
     2041 aactctggta ccaccttcag ataccctgtt tcgtttagcg ataaattacg tgaggtatat
     2101 atggaggggg aagccttctt tgaagtggct aaaaatgcag aacaaccttt tgtagtcaat
     2161 gcaggacaat taaaaatcca ggtattaggt acccgattta atgtttgtgc ataccctgat
     2221 gaccagcagt tttcggcaac actggatgaa ggatcggtaa tggctatcaa catcagcaat
     2281 ggcaaaacct taagattaaa ccccggagaa caggtgatac tggatcggga aactaattta
     2341 atgaatcata taagcgttga cacagccctt tatacctcat ggaaagaaaa catgctgaaa
     2401 ttcgaggatg ccccatttga ggaagtaatc aaaaaaatgg aaagatggta tgatgtaaaa
     2461 ataaaagtgg atccctctat taataca
//
LOCUS       DATDNM010000066         5556 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_114782, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000066 DATDNM010000000
VERSION     DATDNM010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5556
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114782"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2306)
                     /locus_tag="VI413_01125"
     CDS             complement(<1..2306)
                     /locus_tag="VI413_01125"
                     /inference="COORDINATES: protein motif:HMM:NF037144.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY6913249.1"
                     /translation="MKQFLLLAIWLLFSIYTSAQTAPVANPDTLTTNEDTPVTFNVTT
                     NDTDIDGNINVSTVDLDPATSGIQTSFTVSGEGTYQTIGSGNIIFTPVANYNGTATPV
                     NYTVSDSLGAVSNISSINITVTAINDAPSFTKGLDQAICENSGVQTVNNWATALSAGP
                     INESSQLLSFTATNNNNTLFTVQPAINATGNLTYTPALNQNGSATITVQINDNGGIAN
                     GGVDKSADQTFSITINPLPVPTFTASAGLTTCIGTDVTYTTQGGGGIINYVWSVPGTL
                     GVDYSITSGGIGTSSNTVTLKWLTAGSKTVTVNYSNSSSCAGLTPATSTTTVSALPVP
                     TFTASAGLTTCVGTDVTYITQGGGGITNYNWSVPGTLGVDYSISSGGIGISSNTVTLK
                     WLTSGSKTVTVNYSNSGGCSGSTPATNTTNVVALPTIYNVTGGGSYCSGGIGVVIGLS
                     GSQTGVSYQLYSGASPVGSAVSGTGSAISFGNQTVAGANYNVIGTNATSCSQAMNGSA
                     TITVNAIPTIYNVTGGGSYCSGGSGVAIGLSGSETGVSYQLYSGASPVGSPISGTGSA
                     ISFGNQTVAGANYNVIATNAASCTQAMNGSVSVTVNALPIIYNVTGGGSYCSGGSGVA
                     IGLSGSQTGVSYQLYSGASSVGSAVSGTGSAISFGNQTVAGANYNVIGTNATSCTQAM
                     NGSVAVVVNPLPASPIVNNANPGNICPLKTVDLTSLLTSTTPIGGAILYKATNDPLGI
                     SVADPTKAGAGTYYLFYQNSTGCYSASTA"
     gene            complement(2529..4925)
                     /gene="pbpC"
                     /locus_tag="VI413_01130"
     CDS             complement(2529..4925)
                     /gene="pbpC"
                     /locus_tag="VI413_01130"
                     /inference="COORDINATES: protein motif:HMM:TIGR02073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1C"
                     /protein_id="HEY6913250.1"
                     /translation="MPFFINITNFKHWCVKHRLQYPKPRFWMLSVFFVLVVWFYFSLP
                     KPLFQASYSTIIEDRNGNFMSARIAPDYQWRFPMSDSVPYKFRESIRCFEDEYFSYHL
                     GVNPVSIVRAFGQYIKKGKVVSGGSTLSMQVIRLSRNAKDRNIFSKIYEMILAFRLEL
                     GYSKKEIMNLYASHAPFGGNVVGLEAASWRYYNRSANRLSWGETAALAVLPNAPALVF
                     PGKNHTIYLKKRNRLLDKLCKLKIIDLNTCELAKSEPLPDKPQALPQLATHLLNKVVN
                     DGYSGQRIQTTLDKKTQQFVTSVATKFARYYTENYINNVAVLVLNTKTGEVLAYVGNA
                     EISGKKTAQYVDNVISNRSSGSILKPFLYAAMLNDGELLPNSLVADIPTRFGGYAPEN
                     FEKSYEGAVPASTALAHSLNIPAVRELEQYGSVRFHSFLKNIGFTSITQPPSYYGLSL
                     ILGGAEVSLLETTSMYAALGRSLLSYTNTYGKYSGNDYQLAQYVLDKDKKEAQLLDHS
                     KLSAGAIWCTLDALSTVNRPWGEIGWEYFASTHKIAWKTGTSFGSRDAWSVGVTPQYT
                     VGVWVGNSNGEGRPGLTGVTHASPIMFEVFKYLNPTNWFEEPRSDMERIAVCRQSGYR
                     ATDNCEVDTVFVPKRGVKVKACPFHQSVFLDATETYRVTGSCYPVGQMHIVSRFVLPP
                     SEEFFYRKLHPEYAPLPPYMTSCIPPHEHVLDIMEPDNNTAIYIPKGIEGEQGMLIFE
                     AVHRNPNATLFWHIDSEYISQTKGTHKIEVSPSIGKHILTVEDEEGNIVKRRFKILGK
                     "
     gene            complement(5013..>5556)
                     /locus_tag="VI413_01135"
     CDS             complement(5013..>5556)
                     /locus_tag="VI413_01135"
                     /inference="COORDINATES: protein motif:HMM:NF036531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913251.1"
                     /translation="LNFNARLRKIVSITNRSNQNMYVHVQQQGIPVMKAQAAVSENLN
                     LTVHYLDMKDRPVNPTQLKQGTDFYAEVTVAHPGVRMNYTDLALSQLFPSGWEIISSR
                     LDAVKSSRFKSDAVRYQDIRDDRVYMYFDLDKGQKKVFKVLLHAAYLGSFYMPSVQCE
                     AMYDNTIQARTTGQWIKVVK"
BASE COUNT         1613 a         1231 c         1161 g         1551 t
ORIGIN      
        1 gctgttgagg cactataaca accagttgaa ttctgataaa aaagataata ggttccggca
       61 ccagcttttg tcggatctgc aactgatatc cctaatggat cattagttgc tttgtataag
      121 atggcacctc cgattggtgt agtactggtc aataatgaag taaggtcaac ggtttttaat
      181 ggacatatat tacctggatt tgcattgttt actatcggtg aagccggaag cggattaacc
      241 actacggcaa cgctgccgtt catagcttgc gtacaactgg ttgcgtttgt accaataacg
      301 ttgtaatttg cacccgctac tgtttgatta ccaaaggaaa tagcagaacc ggtgcccgaa
      361 actgcggaac ctacagaact tgcgccggaa tagagttgat aactgactcc ggtttgagaa
      421 cccgacaaac caatagcaac tccgctgcca ccagaacagt aagaaccgcc gccggtgaca
      481 ttgtaaatga ttggtaaagc attgacagtt accgatacac tgccgttcat ggcttgcgta
      541 caactggctg catttgtagc tataacattg taatttgcac ccgctactgt ctgattacca
      601 aaggaaatgg cagaaccagt gcccgaaatt ggcgaaccaa cagggcttgc accggaatag
      661 agttgataac tgacaccggt ttcagaaccc gataaaccaa tggcaacacc gctgccacca
      721 gaacaataag aaccgccgcc agtcacgttg taaatggttg gtatagcatt aactgttatt
      781 gttgcactac cattcatggc ttgcgaacaa ctagttgcat ttgtgccaat aacattgtaa
      841 tttgctccag ctactgtctg attaccaaag gaaatggctg aaccggtacc cgaaactgca
      901 gaacctacag gacttgcgcc ggaatagagt tgataactga ctccggtttg agaacccgat
      961 aaaccaataa ccactccgat gccacccgaa caataagaac cgccgccagt cacattgtaa
     1021 attgttggta aagctactac attggtggta tttgttgccg gagttgaacc cgaacagcca
     1081 cccgaattgc tgtaattaac cgtaaccgtt ttgctacctg aagtcaacca tttaagcgta
     1141 acagtattgc tcgaaatacc aatcccgccg gaactaatgc tgtaatccac tcccaaagta
     1201 cccggaacac tccagttata attcgttatt ccgccaccgc cctgggtaat ataagtaaca
     1261 tcggtaccta cgcaagtagt taaacccgca gaagcagtaa aggttgggac aggaagtgct
     1321 gaaaccgtag tggtacttgt tgcaggagtt aaacccgcac aactactcga attgctgtaa
     1381 ttgactgtaa cggttttact gcctgcagtc aaccatttta aggtaacggt attactcgaa
     1441 gttccgatac ctccggaagt tatgctgtaa tccacaccca acgtgccggg aacactccag
     1501 acataattga ttattccgcc accgccctgc gtagtataag taacatcggt acctatgcag
     1561 gtagttaaac ccgcggaagc agtaaaggtt gggacaggaa gtggatttat tgttatacta
     1621 aatgtttgat cggcagattt atccacacca ccattagcaa taccaccatt atcattgatc
     1681 tgaacagtta tagttgccga accgttttga ttcagagccg gagtatatgt aaggtttccc
     1741 gttgcattaa tggctggttg tacagtaaat aatgtgttat tattattggt tgcagtaaat
     1801 gacagtaact gggaagattc attaatcgga cctgcactca aagctgttgc ccaattgttt
     1861 actgtttgaa ctccgctatt ttcacaaatt gcctggtcta atccttttgt aaaagaaggt
     1921 gcgtcattaa tagctgtaac cgtaatgttt attgacgaaa tattggatac agcacctaaa
     1981 gagtcactga ctgtataatt tacaggggtt gctgttccat tgtaatttgc aacaggggta
     2041 aatataatat ttccggaacc gatggtctga taagttcctt ctccggaaac agtaaatgaa
     2101 gtttgaatac ctgaagtagc cggatctaaa tctacagttg agacattgat atttccatca
     2161 atgtcagtat cgtttgttgt gacattgaat gtaacaggag tatcttcgtt tgttgttaga
     2221 gtatcaggat ttgctaccgg cgcagtttgt gctgaagtat aaatcgaaaa taataaccaa
     2281 attgctaaaa gtaaaaattg tttcataatc atttactttt tccggattga tagaaactca
     2341 ttaatccgtt atcgattttt gaacttacat gttgattaga aaacaatttg tatttaggta
     2401 ttgtttgcat ttgtaataaa ttgtttacaa actaattaag gacaaaaaaa ttgtgctaca
     2461 taaaatgaaa gcctgctcca attaaggaat aggctttttt tgttattaaa aatgagttat
     2521 tgcaactttt atttccccaa aatcttaaac cttcgtttta caatatttcc ttcttcatct
     2581 tctacagtga gaatgtgttt tccaatggat ggcgacactt caatcttatg tgtacctttg
     2641 gtttggctta tatattcgct gtcgatatgc cagaaaagag ttgcattcgg attacgatgt
     2701 acagcttcaa aaatcaacat tccctgctca ccttcaatac ctttagggat ataaatagcc
     2761 gtattgttat cgggttccat aatatccaac acatgttcat gtggtggaat gcaactggtc
     2821 atatatggtg gcagcggagc atattcgggg tggagcttcc gatagaaaaa ttcctctgat
     2881 ggaggcaaaa cgaaccgcga aacaatatgc atttgcccaa cgggataaca agatccggta
     2941 acacgatatg tttcagtagc gtccagaaaa acggactggt gaaacggaca cgccttgact
     3001 tttacgcccc gttttgggac aaaaactgta tctacttcgc aattatccgt tgcccggtaa
     3061 ccactttgcc ggcaaacggc gatgcgttcc atgtctgaac gcggctcttc aaaccaattt
     3121 gttggattca gatacttgaa aacttcgaac ataatgggcg aagcgtgcgt gactcccgtc
     3181 agtccgggac ggccttctcc attggaattt cccacccaca ctccaaccgt atattgtggc
     3241 gtcactccga ccgaccatgc atcgcgcgaa ccaaaactag tgcccgtttt ccacgcaatt
     3301 ttatgggtgg atgcaaaata ctcccagccg atttctcccc acggacgatt aaccgttgaa
     3361 agcgcatcga gcgtacacca aatggcaccg gcactgagtt tggaatgatc cagtaactga
     3421 gcctctttct tatctttatc caacacatat tgagctagtt gataatcatt ccccgaatat
     3481 tttccatagg tattggtgta cgacaagagc gaacggccca aagctgcata catagaagtg
     3541 gtttcaagta aactaacttc agctccaccc aaaatcagcg acaaaccata atacgaaggc
     3601 ggttgggtaa tggaggtaaa acctatgttt ttgagaaacg aatgaaaacg caccgatccg
     3661 tattgctcca gttcccttac agccgggata ttgagtgaat gcgccaatgc tgtgcttgca
     3721 ggaacagctc cttcgtaact tttctcgaaa ttttccggtg catatccacc aaatcgcgtt
     3781 ggaatatcgg caactaacga atttggcaac aattcgccat cgttaagcat ggccgcatac
     3841 aagaatggtt tcaggatact tcccgagctt cggttagaaa tgacattatc aacgtattgg
     3901 gcagttttct tcccggaaat ttctgcattg ccaacatacg ccaacacttc gccggtttta
     3961 gtattcaaca ccagtaccgc cacattattg atgtaatttt cggtataata acgggcaaat
     4021 ttagtggcaa cggaagtgac aaactgctgc gtttttttgt cgagtgtggt ttgaattcgt
     4081 tggcctgaat aaccatcatt caccacttta ttcaataaat gggttgcaag ttgtggcaaa
     4141 gcttggggtt tatcgggcaa aggctctgat tttgcaagtt cacaggtatt gagatcgatg
     4201 attttcagct tgcaaagttt atcaagcagg cggtttcgtt ttttcaggta aatagtgtgg
     4261 ttttttcccg gaaaaaccag cgcaggtgcg ttcggcaaaa ctgccaatgc cgccgtttcg
     4321 ccccacgaaa gcctgttagc cgaacgattg taatatcgcc aagaagccgc ctctaatcct
     4381 acaacattac caccaaaagg tgcgtgcgaa gcgtacagat tcatgatttc ttttttgctg
     4441 tagcccaact ccaaccggaa agccaatatc atttcataga ttttcgaaaa gatattacgg
     4501 tctttggcat ttcggctcaa acgaataacc tgcatgctga gtgtgcttcc gccgctcacc
     4561 acttttcctt ttttgatata ctgaccaaaa gcacgaacga tggaaacggg atttacgccc
     4621 aaatgataac tgaaatattc atcctcgaaa cagcgaatgg attcacgaaa tttgtacgga
     4681 acagaatcgg acatcggaaa ccgccactga taatcgggag caatgcgcgc cgacataaaa
     4741 ttaccattac gatcttcgat aatagtggaa tacgaagcct gaaacaacgg ttttggaagc
     4801 gaaaaataaa accatacgac caacacaaaa aacacagaca gcatccaaaa ccgtggcttc
     4861 ggatactgca agcggtgttt gacgcaccag tgtttgaaat tggttatatt tataaagaaa
     4921 ggcatttata aaatattttc acgcaaagtc gcagagccgc agattttatt ctttgcgttt
     4981 tcgcgacttt gcgtgagatt actacattcg acttatttca ccacctttat ccattgcccg
     5041 gttgttctgg cctgaatggt attgtcatac atggcttcgc actgaaccga tggcatataa
     5101 aacgatccca ggtaggcggc gtgcagcaaa actttgaata cctttttctg ccctttatcc
     5161 aaatcgaaat acatgtacac cctgtcgtcg cggatatcct gataacggac agcatcgctt
     5221 ttaaaacgag agcttttcac agcatccaaa cgggaactaa taatttccca accagatgga
     5281 aagagttgcg aaagtgccag gtcggtataa ttcatgcgaa cacccggatg agccaccgta
     5341 acttcggcat aaaaatcggt tccttgtttt aattgagttg gattaaccgg cctgtctttc
     5401 atatccagat aatgtacggt gagattcaga ttttctgaaa ctgccgcttg tgccttcatc
     5461 accggaatgc cctgctgctg aacatgcaca tacatattct ggttggagcg gttggtaatg
     5521 ctcacaattt ttctcaacct ggcattgaag tttagt
//
LOCUS       DATDNM010000067         2287 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_8092, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000067 DATDNM010000000
VERSION     DATDNM010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8092"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..788)
                     /locus_tag="VI413_01140"
     CDS             complement(<1..788)
                     /locus_tag="VI413_01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010537566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6913252.1"
                     /translation="MKITIENLNKVYPNGNHALKDVNLEINNGMFGLLGPNGAGKSSL
                     MRILVTLMQPSSGIVKMNGYDLTRDRDKIRAMLGYLPQDFRFFSHLKTYEFLDYAARL
                     AGMKNSKERKLAVDKMLEEVGLFEARDRQANKLSGGMKRRLGIAQALINNPKIIIVDE
                     PTTGLDPEERIRFRNLLSTISTQDVIIILSTHIVGDISSSCTDMALLNMGGLAFTGSP
                     DELVVRAEGKVWLIQATEAEYLEINEKYPVISNVPNSEGWEIQVV"
     gene            complement(976..1653)
                     /locus_tag="VI413_01145"
     CDS             complement(976..1653)
                     /locus_tag="VI413_01145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913253.1"
                     /translation="MKTSNYITLSFFTFLFGGIFILFLAAKIDPRSDQKQEFVTDEKP
                     LDNFSVVIAEPGANIRIKSGEASKIGLYYLKDDTCTLPAYIVRNDTLFVQANPQKNGH
                     WSTNVICRQINSIEGKAKSRINVEQFKCDSLLVRLDNAEFYYRREKNPVGFALRLLAF
                     QSKVNLENAFITNLDVNFNKTDMDAWGSHIKNLSGKLNDKSNLSMGRIDRISLEADST
                     STYRLEK"
     gene            complement(1640..2020)
                     /locus_tag="VI413_01150"
     CDS             complement(1640..2020)
                     /locus_tag="VI413_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY6913254.1"
                     /translation="MEFQSSKGIFLQIADNLCHQILEGLLNPGDRVPSVRDLAEEFEV
                     NRNTVMRTYTILQESGIFDNKRGIGFFVSENAVELIRTNEKAHFFASELPYFIRKVKL
                     LKLNSNDLSELVSEIKNNDSHENQ"
     gene            complement(2022..>2287)
                     /locus_tag="VI413_01155"
     CDS             complement(2022..>2287)
                     /locus_tag="VI413_01155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913255.1"
                     /translation="GSVYFNRFALVKTLIISGICIFTVVVSFVILSHLFYPAETRGFS
                     IQLKTYKVTETLYNVQLAAYLLGCLSWIFFLVLGYFKLKEKEV"
BASE COUNT          610 a          478 c          501 g          698 t
ORIGIN      
        1 actacctgta tttcccaacc ttcgctgttc ggaacattgg aaatcaccgg gtatttttcg
       61 ttgatttcaa ggtattcagc ttctgttgcc tgaatcagcc acacttttcc ttcggcacga
      121 accaccaact cgtcgggcga gccggtaaat gccaaacctc ccatgttcag caaagccata
      181 tcggtacacg agctggaaat gtcgccaacg atgtgagtcg ataaaataat gatcacatct
      241 tgtgttgaaa tggttgaaag cagattccgg aaacggatgc gttcttcggg gtcgaggccg
      301 gtggttggct cgtcaacaat aataattttt gggttattga tcagcgcctg cgcaatacca
      361 aggcggcgtt tcatccctcc tgaaagtttg ttggcttgcc ggtcgcgggc ttcgaataaa
      421 ccgacttctt ccaacatctt gtccacagcc agtttacgtt ctttgctgtt tttcattccg
      481 gcgagccggg ctgcatagtc gagaaattcg taggttttca ggtgcgaaaa aaaacgaaaa
      541 tcctgtggca aataaccgag catggcgcgg attttatcgc ggtcccgggt caggtcgtaa
      601 ccattcattt ttacaattcc cgacgatggt tgcatgaggg taaccaatat gcgcatgagg
      661 ctcgatttgc ctgctccgtt tggcccgagc aagccgaaca tcccgttatt gatttccagg
      721 ttcacatcct ttaacgcatg gttgccgttg ggatagactt tgttgaggtt ttcaatcgtt
      781 attttcactg gcaaaaagtt aggtcacggt ttgtatgact aaatatacaa caataggttt
      841 aattgcttat ttaaaactaa gttacaaatg ttagaggtag attcattatt ttatcgatga
      901 acaggctttt gtgaaagata aaatggccga atgggcagat aagccattca gccatttcct
      961 gttttctgaa catgtttatt tttccagccg gtatgtactg gtcgaatcgg cttcaaggct
     1021 gattctgtcg attcttccca tagaaagatt cgatttatcg ttcaactttc ctgaaaggtt
     1081 tttgatgtga cttccccatg catccatatc cgttttgttg aagtttacat cgagattagt
     1141 tataaacgca ttttcgagat taacctttga ttggaaagcc aataaccgaa gtgcaaaacc
     1201 taccggattt ttttccctgc ggtaataaaa ttccgcattg tcaagcctta ctaataagga
     1261 gtcgcacttg aactgctcaa cattaattct gctctttgct ttcccttcaa tactgtttat
     1321 ttgcctgcag attacattgg ttgaccaatg tccgtttttt tgaggattgg cctgtacaaa
     1381 aagcgtgtcg tttcgaacaa tataagccgg cagggtgcag gtgtcgtctt tcaggtagta
     1441 caaaccaatt ttggatgctt ctcccgattt tatgcgaata ttggcccctg gttcggctat
     1501 aactaccgaa aaattgtcca acggtttttc gtcggttaca aattcttgtt tttggtcgct
     1561 gcgcggatca attttggccg caagaaataa gataaatatt ccgccaaaca ggaaggtgaa
     1621 aaatgaaagt gtgatatagt tactggtttt catggctatc gttgtttttt atttcagata
     1681 ctaattcgct taagtcgttg ctgttcagtt tcagaagttt tactttccgg ataaaatagg
     1741 gcaattcgga agcaaaaaaa tgagcttttt cgttggtacg tatcaattca acagcgtttt
     1801 cggaaacgaa gaatccgatg ccgcgcttgt tgtcgaaaat gcccgattcc tgcaaaatgg
     1861 tgtaagtgcg cataaccgtg ttgcggttta cctcaaactc ttcggccaga tcgcgcaccg
     1921 atggcacccg gtcgcccggg ttgagcaaac cctccagaat ctgatgacat aaattgtcgg
     1981 ctatctggag aaatattcct tttgatgatt gaaattccat gttatacctc tttttctttt
     2041 agtttgaaat atcccagaac caggaagaaa atccaggaga gacaacccag caaataggcg
     2101 gctagctgaa cattatagag ggtttcagta actttatagg tttttaactg aatactgaat
     2161 cctctagttt ctgctggata gaacaggtga gagagaatca caaatgatac aacgacagtg
     2221 aaaatacaaa ttcctgaaat gatgagtgtt ttgaccaatg caaagcggtt gaaataaacc
     2281 gaaccgg
//
LOCUS       DATDNM010000068         4612 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_8133, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000068 DATDNM010000000
VERSION     DATDNM010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4612
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8133"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(14..613)
                     /locus_tag="VI413_01160"
     CDS             complement(14..613)
                     /locus_tag="VI413_01160"
                     /EC_number="1.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016646 - oxidoreductase activity, acting
                     on the CH-NH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HEY6913256.1"
                     /translation="MKKDSTNTEKEHVSWKPGTLIYPLPAVLISCGSSPDDYNLLTIS
                     WVGTICTNPPMCYISVRPERHSYEIIKQTGEFVINLTNEKMAYATDWCGVRSGKDYNK
                     FSEMNLTPAKAEMVNAPMVKESPLCIECKVKEIIPLGSHDMFIADVINVQADTKYIDP
                     ETNTFDLAKAKLIAYSHGHYYKLGEEIGKFGWTVQKKKK"
     gene            complement(610..1068)
                     /gene="pyrI"
                     /locus_tag="VI413_01165"
     CDS             complement(610..1068)
                     /gene="pyrI"
                     /locus_tag="VI413_01165"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009319529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HEY6913257.1"
                     /translation="MPTKELKVAALRNGTVIDHIPADKLFKVVSILHLDTCLNQITLA
                     NNLESAKIGSKGLIKISERAFAEDETNKIALIAPNAKINIIRDFQVVEKRRLILPDEI
                     REIVQCTNPVCVTNNQPITTRFHVQNHEGQIVLKCHYCEREVKQEEVKIK"
     gene            complement(1113..2018)
                     /gene="pyrB"
                     /locus_tag="VI413_01170"
     CDS             complement(1113..2018)
                     /gene="pyrB"
                     /locus_tag="VI413_01170"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HEY6913258.1"
                     /translation="MSTNSLVSISDYSKEEILAILDSAAEFEANPNRKILDGKVIATL
                     FFEPSTRTRLSFETAVIRLGGSIIGFSDASTSSSSKGETLNDTIHMVSCYADAIVMRH
                     PLEGAARYAAEVSPVPIINAGDGANQHPSQTLLDLYSILKTQGTLENLTICLVGDLKY
                     GRTVHSLIMAMSHFHPTFKFIAPDELKMPDEYKVFCRKNNIPFTEVNELNDNFNDADI
                     LYMTRVQKERFQDLMEYERVKNVYTLKNAMLENTKPNLRILHPLPRVTEIDPDVDSNE
                     KAYYFRQAQNGLYVRQAIVSKVLNK"
     gene            complement(2330..2926)
                     /locus_tag="VI413_01175"
     CDS             complement(2330..2926)
                     /locus_tag="VI413_01175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009127135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEY6913259.1"
                     /translation="MSDIYKTISTNTEGIYKEKGSKFLSFAIPVNDVEEVKEIVKEYR
                     KRFFDARHVCYAYVFGAERANFRANDDGEPSGTAGRPILGQINSRELTNILVIVVRYF
                     GGILLGTGGLVTAYKEATADALNQAVIIEKTVTETISINFDYIQMNDVMKAIRDTNPQ
                     IVSQTYDNRCNMQLSIRKQDADLLTGKLEKISSLSIEN"
     gene            3136..3531
                     /locus_tag="VI413_01180"
     CDS             3136..3531
                     /locus_tag="VI413_01180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913260.1"
                     /translation="MPRLELKQIYLELEHEIKRLSLSTDFVYMDATRDDAHQVISEMR
                     QDIDNWMFQLSERTIACYELESLLKSKRDQIQLQRLENKGVEKDQLESLKDEILHAIA
                     QSIMNSYFNSLFRSEAHRINRNLKKEMIF"
     gene            3692..3764
                     /locus_tag="VI413_01185"
     tRNA            3692..3764
                     /locus_tag="VI413_01185"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3725..3727,aa:Thr,seq:cgt)
     gene            3918..4514
                     /locus_tag="VI413_01190"
     CDS             3918..4514
                     /locus_tag="VI413_01190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913261.1"
                     /translation="MKKIIFRFSTTLLILLHAGSVFSQETITKVPKQISVEGGYRFVL
                     PVIDRSAVPFVNSATNGYGFLVDYAWKLSGLNGKKPGIYLSVPIGYSVMLPDDNTSKR
                     VSMLNYGWTVRHELSVNKPITPFLGYGLLLNTLKLDGTDGGVMGHQTQFEFGANLNTK
                     NRLKYFAKLQYSYTSYPKLGDSKRIHFQYFDLRLGVRF"
BASE COUNT         1345 a          836 c          859 g         1572 t
ORIGIN      
        1 ttaggggtcg tttttacttt ttctttttct gtactgtcca accaaatttt ccaatttctt
       61 cgcctaattt ataatagtga ccgtgagaat aagcaattag ttttgctttt gccaaatcaa
      121 aagtatttgt ttctgggtca atatatttgg tatcagcttg cacgttaatt acatctgcta
      181 taaacatatc gtgagagccg agcgggataa tttcttttac tttgcattct atgcaaagag
      241 gcgattcttt taccatgggc gcattcacca tttctgcttt cgccggagtc aggttcattt
      301 cagaaaattt attataatct tttccgcttc ttacaccaca ccaatcggtg gcataagcca
      361 ttttttcgtt tgtgagatta ataacaaatt cgcccgtttg ttttataatc tcgtatgaat
      421 gtctctcggg acgtacagaa atataacaca tgggtggatt tgtacaaatt gtgccaaccc
      481 aactaatagt tagtaaatta taatcgtcgg gtgaactccc gcacgaaatc aacactgccg
      541 gtagcggata tattagtgtt cccggtttcc atgaaacatg ctctttttca gtattagttg
      601 agtccttttt cattttattt taacttcctc ttgtttcact tcccgttcgc aataatgaca
      661 tttcaataca atttgtcctt catggttttg tacatggaaa cgtgtggtaa tgggttgatt
      721 attagtaaca cagacgggat tggtacactg tactatttcc cgaatctcgt caggcaatat
      781 taatcgacgt ttttccacta cctgaaaatc gcggatgata tttatttttg cattaggtgc
      841 aatcagcgca atcttattgg tttcgtcttc ggcaaaagca cgctcggaga tttttattag
      901 tcctttcgac ccaatttttg cactttcaag attgtttgct aaagtgatct gattcaggca
      961 ggtgtccaaa tgcagtatgg aaactacttt gaataattta tccgccggaa tatggtcgat
     1021 tactgttccg ttgcgaagtg ctgctacttt taattctttt gttggcatac gaatttattc
     1081 gatttactta ctgcttactt tcttacctct tactacttgt taagtacttt gctcacaatt
     1141 gcttgtctta catataatcc gttttgggct tgtcggaagt agtaagcctt ttcgttgctg
     1201 tcaacatccg gatcaatctc cgtgacacgt ggtagtggat gtagaattcg caagtttggt
     1261 ttagtgtttt caagcattgc atttttgagg gtataaacgt ttttcacgcg ctcatattcc
     1321 atcaaatcct gaaaacgctc tttctgaacg cgcgtcatat acaaaatgtc ggcatcattg
     1381 aaattatcgt tcagttcatt tacttccgtg aacggaatat tattttttcg gcaaaaaacc
     1441 ttgtattcgt caggcatttt caattcatca ggggcaataa acttgaaagt gggatggaag
     1501 tgagacatgg ccatgataag ggaatgcact gttcgcccat atttcaaatc tccgacaagg
     1561 caaatggtta gattttcaag tgttccctga gttttcaaaa tagagtacag gtcgagcagg
     1621 gtttgagaag gatgctgatt agcaccatct ccggcattga taataggtac cggcgaaact
     1681 tcagctgcat agcgtgctgc accttcaaga gggtggcgca tcacaatggc atcagcataa
     1741 caacttacca tgtggatagt gtcattcaac gtttcacctt tcgacgaact actggtggac
     1801 gcatcggaaa agccgataat tgatccaccc aagcgaatta cagctgtttc aaaacttaat
     1861 cgcgtacgtg ttgacggttc aaaaaacaga gtggctatca ctttgccatc cagtattttg
     1921 cgatttggat tggcttcaaa ttcagcggct gaatcaagaa tggctaaaat ttcttctttg
     1981 ctgtaatcgg aaattgatac taaactgttt gtgctcataa tatgacccca aacccctaaa
     2041 ggggcttttg ttagtttata cttttatttt taaacgctct aatattttca tttcacatac
     2101 tcttgttccc cttaaggagt tagggttgtt ttataaaaaa aaaaccaaca caaatccgat
     2161 gcagatttat attggttttg tatttcttgt aagcaactta cacgcacaac tgtttagcag
     2221 tgagctgctt tgttcgaaaa aatatttaaa gtttctcgtt ttcattttcg aatacaaaga
     2281 tagtcgtttt atttggaata atgaaatgga aattcaagct tttgttggat taattttcta
     2341 ttgataaact actgattttt tcaagttttc cagtcaacaa atctgcatct tgtttgcgga
     2401 ttgacagttg catgttacat cgattatcat aagtctggga cacaatttgc gggttagtat
     2461 ccctgatagc cttcataaca tcgttcattt gaatgtaatc gaaattaatt gatattgttt
     2521 cagttacagt tttttcaata attactgcct gattcagcgc atcggctgta gcctccttgt
     2581 atgcagttac cagcccaccg gtaccaagca aaatacctcc gaaatagcga actactatga
     2641 ccaaaatgtt agtgagttcg cgggagttga tttgccccaa aatcggacgt ccggctgtac
     2701 ccgatggctc accgtcatcg tttgcacgaa aattcgcacg ttctgcacca aacacataag
     2761 cataacatac gtgtcgtgca tcgaaaaagc gtttacgata ttcttttaca atttccttta
     2821 cttcttcgac atcattcact ggaattgcaa atgacagaaa tttgctgcct ttttctttgt
     2881 aaatgccttc agtatttgtg gatatggttt tgtaaatgtc cgacatatgt ttgctcctaa
     2941 cttgcttgcg attggctgca aaattacaac aaaattgaca ataatgaaat ttgaaatcct
     3001 cattagagtt tttatagttt cttagactaa aaaagatgtc attagcagaa catttaggca
     3061 ttaatatatg ttttaatttt taccctgaaa tacagaagaa ttgttgattt atctaacctt
     3121 taaaattata ctattatgcc aagacttgaa ttaaaacaga tttatttgga actggaacat
     3181 gaaattaaac gattgagcct gtctaccgat tttgtttaca tggatgctac tcgtgatgat
     3241 gcgcatcaag ttatatccga aatgaggcaa gatattgata actggatgtt tcagttaagt
     3301 gaaagaacta ttgcttgtta tgagcttgaa agtctgctaa aatcgaagag ggatcaaatt
     3361 caacttcaac ggcttgaaaa taaaggtgtt gaaaaagatc aactagaaag tctcaaagat
     3421 gaaatactac atgcaatagc tcaatcaatt atgaacagtt attttaattc tttatttcgt
     3481 tcagaggccc atcgaataaa cagaaatctc aaaaaagaga tgatcttttg aaaataatta
     3541 tattgccaac aattcttttg attgtttaat aatttgcatg tttatacctg tcggtttttt
     3601 aattgaaaat cggcaggtat ttttgttttt tctgcaaaaa aaacaaaaaa aagtatatat
     3661 ttgcatgctc aattttttga gtgaagattt tgcctcttta gctcagttgg tagagcaatt
     3721 cattcgtaat gaataggtcg cgggttcgag tcccatgaga ggctcttgta ataagccaac
     3781 cagtctggtt ggctttgtta tgttatttga atatgatgaa tttgataact aataatcaag
     3841 attgagatac gtggctaatt atcagtatta tatagaatat tggttttatg gaacaacaga
     3901 aaaaataatt acattgtatg aaaaaaataa tttttagatt ctcaacgaca ctcctcattt
     3961 tactccatgc cggaagtgta ttttctcagg aaacaattac aaaagtgcca aaacaaatca
     4021 gtgttgaggg tggatacagg tttgttttgc cggttatcga tcggtcagca gtaccttttg
     4081 ttaactcggc tacaaatggt tacggatttc tggtagatta tgcatggaaa ctcagtggat
     4141 taaatggcaa aaaaccagga atttacttgt cggttccaat cggatattca gttatgctgc
     4201 cagatgacaa tacttcaaaa cgtgtttcaa tgctgaatta tggttggaca gttcggcatg
     4261 aactgtcagt aaataaacca attactcctt ttctgggtta tgggctcttg ttaaatacgc
     4321 tgaaattgga tggaaccgat gggggtgtaa tgggccatca aacgcaattt gaattcggag
     4381 caaacctgaa taccaaaaac cgattaaaat actttgccaa actacaatac agctatacat
     4441 cttatcctaa attaggtgac tctaaacgta tccatttcca gtattttgat ttgcgacttg
     4501 gcgttcggtt ctaatccatt gaattaattg tgaataacaa aaccggtaga atttaattct
     4561 accggttttg ttgttttaat gtttgaacta tcacttttca cgtgaatgcc gc
//
LOCUS       DATDNM010000069         7313 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1503509, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000069 DATDNM010000000
VERSION     DATDNM010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7313
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1503509"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2392)
                     /locus_tag="VI413_01195"
     CDS             complement(<1..2392)
                     /locus_tag="VI413_01195"
                     /inference="COORDINATES: protein motif:HMM:NF040164.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5723 family protein"
                     /protein_id="HEY6913262.1"
                     /translation="MKRNFIFRISLVLCLGFSGLTATGQQVNTLYFMENVPVRNYFNP
                     AFQATSNFYFGIPALGYTQFGIGNNSITLKDLIYGKNNKTMYFLNQDGDKNKVYNSLK
                     PTTSFRTDLQLSLLDFGFRTGDSYWTFALSEKVDGQGSVPKDLMKLLLYGTPQLENNK
                     YNFQTLGADVTAYTEAAFGYSRILNEKLTVGAKLKFLYGTLNASMSNKNMDLTAGVDQ
                     WTLKGENIINYSAPAMLSGDSIQNFQVNQPNAITDWIKPSGLGAGIDLGVTFKPIKDL
                     TLSAALLDLGMIKWTRNVRNVKTTVDYTFNGFGNFNLDSKANSQALIDSVLTTFSNSP
                     SITQTSEFYTTYTSPKLNIGAEYAFLDNKLSVGLLSRTVRHNKTNFEELTASVNGRPL
                     DWLNASVSYSVLNGRMSNVGAGLGLKTGFVNWVFSADYVPFTYATLPINFSNGTFEAP
                     IGYNSKGLNLAVGINLVFGNRKDSDHDGVVDKKDKCPETPFSVIVDKKGCPVDTDGDG
                     VPDYLDKCPKTPKEAYGKIDQNGCPLDNDSDGVADYKDKCPDTPKDAIAYVDTLGCTP
                     DKDKDGVADYKDKCPDTPAGIKVDTLGCPLDSDADGIADNLDKCSGTPAAARGFVDKN
                     GCPLDTDGDGVPDYLDQCPNTPVEARGFIDKNGCPLDSDGDGVPDYLHKSKVPVVVTN
                     KQEPEIKKEVRNLFQKALQGIQFETGKYVIKPVSYKILNQIAGVLIANPTYIVEIRGH
                     TDNAGKPETNLKLSTKRAEAVMKYLINKKVDAKRMTAKGYGDTFPLQSNKTAVGKAL"
     gene            complement(2409..4151)
                     /locus_tag="VI413_01200"
     CDS             complement(2409..4151)
                     /locus_tag="VI413_01200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913263.1"
                     /translation="MKRNYRLKFLSIICVFSFILSSCNSGIDLSVVDDPSIKIDGSLA
                     IPIGESNLTIKDVIEKIGLPTGVDTVANEIYLQWAFTDDMGFKTLNLADSIKPFDKQY
                     YPVDYIPLSVGIPLPVNSNIAIEIPDFFDLGINGNVDEQRVDSIKINSSQIDINFDVS
                     DDLKAQFLQASDFTIQFIFDKANLKIDDGVIPTYNPSQYNENGKISIGKYSMYLNGLQ
                     QLPYKILIKLNPSVPVTFSALSYVNINMKFSNIDFAVAYGFFDLTEIEQKQVKIPFNI
                     EDYLPKMDLKFANPLVQITATTNVGADLNIKVNYISAYNDSNPANKIWAWFDNHTTNE
                     KTEQIPGPTKVGEWTSKPFEQFDSKNGETDQLFDSKPYPNMLDYMYLVSSDPARKNNY
                     ITPDSKVHLDIKINIPLKIKGGSTYTFSDTIENLNFETLPDNVDSAILVLKLKNGLPL
                     KANYRMTFHKSNSENDTIPAIGGVITKVSDGLTLGNMTSEYVVYSPLVDDEGTVTEIV
                     PQTIKILLNKNQIAELKQTHFIVFHVTLDSEKKIVNGVETPNPIHITTNNSFGVKLGI
                     FLMGSFNKNITTSN"
     gene            complement(4310..5959)
                     /locus_tag="VI413_01205"
     CDS             complement(4310..5959)
                     /locus_tag="VI413_01205"
                     /inference="COORDINATES: protein motif:HMM:NF040164.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5723 family protein"
                     /protein_id="HEY6913264.1"
                     /translation="MPIKRFIRILVILILSGLIRLSVRAQQVNSLYFMENVPVRHYLN
                     PSFQPVNDFYLSLPVIGFSQLDIGNNSIALKDFIYKQNGQTITFLNPQGNVDHFYNVL
                     KRSTIMHADFQTNLLAFGFRNKDDYWTFSVSEKVNGMLSLPKDLFKLSFYGTPDILSN
                     SYNFTTLQTDISVYTEAAVGLSRKIDEQWTVGGKLKFLYGSANFLNTNRKMNLKAGID
                     KWTVTGNGSVNLSSPIEVNIGANFQSFAYRTPTKLTDWLKPSGIGAGVDFGAEYKLNE
                     KIRLSGAILDLGFINWTRNVHNYQYGIDYSFDGVRQFDSSTGLITLQDVYNRLVTGQL
                     TDSLVQLLKSSTTSELTMKTYLSGTTAKLNLAAEYGLLNNILSFGLLSSSRFSKRTVT
                     EEITASLNARPYKWLNGTLSYSVFNGRMSSVGVGMGIKTGFVNWFLSADYIPFQKITL
                     ALSDVGLNSQNKIVLPYNTTTINFSAGVNLVFDGLITKVKSRKMQTAKKLGLRNLNPK
                     VTRKTSTILPDQNKISRNRTRIGSDGLNKKNPTQDCHCDWK"
     gene            complement(5964..>7313)
                     /locus_tag="VI413_01210"
     CDS             complement(5964..>7313)
                     /locus_tag="VI413_01210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913265.1"
                     /translation="TDLVNLGINSPQSTDKIDSIKVTSISMNVTINVTPDMKSIDPAN
                     LKITIILPTDRVRMFGGGSNVITLLPATYGRPVNIPLTDFMLNTSNGATGFPLLLRVD
                     AKSGNVPLALSQNSAVTCDISFSQLVYSVAYGDFESATNLSFTHRRLQEFGKVFPAGQ
                     LKFTNPQLHIKAISNIGTYLSFNVDYIKAFVSSDSSIPPVYAWFYDHTANSVADQFDS
                     KPASPGLSVSKDFKTFDKDWGETNLMFENVNRPDMIEYKFSAGINKTLVQNDPTPSFI
                     TPDAKVKVYFTYTIPFQLNKGSYYEYRDTIRNIFSDLATILDKYAVNKISSVAIVLNI
                     KNGYPVQTQFSLQFLDSLGQKLLTDLEKNYTVPAGNVDANGIVQPGNEANQTITLLVT
                     KAQIPELRKAKSIDFSVRFEGENVQSDIHFTKLNTLDLKVGLFVKADLNEKLGTIIK"
BASE COUNT         2244 a         1427 c         1242 g         2400 t
ORIGIN      
        1 tcagggcttt acctactgct gtcttattgc tttggagtgg gaatgtgtca ccatatcctt
       61 tcgctgtcat tcgttttgca tcaacctttt tattaatcag atatttcata acggcttctg
      121 ctcgtttggt tgatagcttc aaattagttt ccggtttccc tgcattatcg gtatgtcccc
      181 gtatttctac tatataggtc ggattagcga ttaatactcc cgcaatctga ttcaaaattt
      241 tataagagac cggtttaatt acatatttac cagtttcaaa ttgaatgcct tgcaatgctt
      301 tttggaataa gttcctgact tctttcttaa tttcaggctc ttgtttgttt gtaacaacca
      361 caggaacttt agacttgtga agataatcgg gtactccatc accatcagaa tcaagcggac
      421 aaccgttttt atctataaat ccgcgggctt caacaggtgt gttcggacat tgatccagat
      481 aatcaggaac cccatcgcca tctgtatcaa gcgggcaacc attcttatcg acaaatccac
      541 gagcagcagc aggtgttccg gagcatttat ccaggttatc tgctattcca tcagcatcgg
      601 aatctaaagg acagccaagt gtatctactt ttatgcctgc tggcgtatca ggacatttgt
      661 ccttataatc agcaacaccg tctttatcct tatcaggtgt gcagcccaaa gtgtcaacat
      721 atgcaattgc atctttcggc gtatcagggc atttatcctt ataatcagcc actccatcgc
      781 tatcattatc aagcgggcag ccattctggt ctatcttgcc gtaggcttcc ttaggtgttt
      841 tcgggcattt gtccagataa tcaggcacac catcaccatc cgtatcaacc ggacaacctt
      901 ttttgtcaac tatcacgcta aacggagttt ccggacattt atcttttttg tcaaccacgc
      961 catcatggtc gctatctttt ctgtttccaa ataccagatt tatacctact gccagattaa
     1021 gccctttaga attatatcca atcggcgctt caaaagtacc atttgaaaaa tttattggta
     1081 gagtggcata agtgaaaggc acataatcag cagagaaaac ccagttcaca aatccagttt
     1141 ttaatccaag accggcacca acattactca ttcttccatt cagaacagag taagatacag
     1201 acgcattaag ccagtctagc ggacggccat taaccgatgc ggttagttcc tcaaaattag
     1261 ttttattgtg tctgacagtt cttgaaagaa gaccaaccga caatttattg tccaaaaacg
     1321 catactcagc accaatattt agtttgggtg atgtgtaggt agtatagaat tcagaagtct
     1381 gtgttatcga aggtgaattt gaaaaagtgg ttaataccga atcgattaat gcttgggaat
     1441 ttgcttttga atccagatta aaatttccaa atccattaaa agtgtaatca acggttgttt
     1501 tcacatttct tacgttccga gtccatttaa tcattcccaa atcaagtaat gctgcagata
     1561 atgtaagatc tttaattggt ttaaatgtaa cacccaaatc tatgcctgca cccaatcccg
     1621 atggtttaat ccagtctgtg attgcattcg gctgattcac ttggaagttt tgaattgaat
     1681 ctccgcttag catagccgga gcagagtaat taatgatatt ctctcctttt aatgtccatt
     1741 ggtcaacacc ggcagtcaaa tccatatttt tgtttgacat tgatgcattt aaggttccgt
     1801 acaaaaattt caatttagca cctacagtca gtttttcatt caatattctg gaatatccga
     1861 atgccgcttc agtataagca gtgacatcag ccccgagagt ttgaaaatta tatttattat
     1921 tttccaattg tggagttccg tacaaaagca atttcattaa atccttcggc acactgcctt
     1981 gtccatccac tttttccgac aaagcaaatg tccaatatga atctccggta cgaaaaccga
     2041 aatcaagtaa acttaattgt aaatccgttc ggaacgacgt tgttggctta agcgaattgt
     2101 aaaccttatt tttatcgcca tcctgattta agaaatacat ggttttatta ttctttccat
     2161 aaatcaaatc tttaagcgta attgaattat ttcctatccc aaattgagta tatcctaaag
     2221 caggtattcc aaagtagaaa ttgcttgttg cctgaaatgc gggattaaaa taatttcgaa
     2281 ccggcacatt ttccatgaaa tacaacgtat ttacctgttg gccggttgcc gttaaacccg
     2341 aaaagcccaa acaaagaacc aggcttattc tgaatataaa atttctcttc ataattcgaa
     2401 tggcttattt agtttgaggt agtaatattt ttgttgaaac ttcccatgag aaaaattccc
     2461 aatttaaccc caaaactatt attggtagtg atatgaattg gatttggcgt ttcaactccg
     2521 ttaacaattt tcttttcact atcaagcgtt acgtggaaaa caataaaatg agtttgtttc
     2581 agctcagcta tctggttttt attcaagagt attttaattg tctgtggtac tatttctgtc
     2641 actgtacctt cgtcatcaac aagcggtgag tacacaacat actcactggt catatttcct
     2701 aacgtcaatc catctgaaac tttagtaatt actccaccaa tagcaggtat tgtatcattt
     2761 tctgaatttg atttatggaa agtcattctg taattagctt tcagaggcaa tccgtttttg
     2821 agtttcaaaa ccagaatagc cgaatctaca ttatccggaa gcgtttcaaa attaaggttt
     2881 tcaatcgtat ctgaaaatgt atacgtacta cctcctttta ttttcaacgg gatattaatt
     2941 ttgatatcaa gatgaacttt actgtctggt gtgatatagt tgttttttct cgccggatca
     3001 ctcgacacta aatacatata atccaacata ttaggatatg gtttactgtc aaacaattga
     3061 tctgtttcgc catttttaga atcgaactgt tcaaatggtt tgcttgtcca ttcgcctacc
     3121 tttgtcggac caggtatttg ttctgttttt tcgtttgttg tatgattatc aaaccaggcc
     3181 catattttat ttgcaggatt tgaatcgtta taagcactaa tataattaac ttttatattt
     3241 aaatcggccc caacattcgt agtagcggta atttgaacca acggattagc aaatttcaaa
     3301 tccatttttg gtaaataatc ttctatatta aatggaattt ttacctgctt ttgctctatc
     3361 tcagtcaaat caaagaagcc ataagcaact gcaaaatcaa tgtttgagaa cttcatattt
     3421 atattaacat acgataatgc tgaaaaagtt acaggcacac tcggatttaa tttgattaaa
     3481 attttgtatg gtaactgttg aagaccattt aaatacatcg agtattttcc aattgaaatt
     3541 ttaccgtttt cattatattg ggaaggatta tatgttggta tgacaccatc atcaatcttt
     3601 aaattagcct tatcaaaaat aaattgaatt gtaaaatcac tggcctgaag gaactgagct
     3661 tttaaatcat cagacacatc aaaatttata tcaatttgag atgaatttat ttttatacta
     3721 tccacacgtt gttcatctac atttccattg attcccaagt caaaaaagtc gggtatctca
     3781 attgcaatat tggaattgac cggtagtgga attccaacag ataacggaat ataatctacc
     3841 ggataatatt gtttgtcgaa gggtttaatt gaatcggcca gattaagggt tttaaaaccc
     3901 atatcatcgg taaatgccca ttgtaaatag atttcattag ccacagtgtc aactccggtg
     3961 ggcaatccta ttttttcaat aacatcttta atagtgagat ttgattcacc tattggaatc
     4021 gccaacgatc catcaatttt gattgaagga tcatccacaa cacttaaatc aatgcctgaa
     4081 ttacacgaac tcaaaataaa agaaaataca caaataatgg atagaaattt taatctataa
     4141 tttcttttca taatttatat tttttggaag ttgacatttt taagcggaaa aacagaatgg
     4201 attagacctc ggaaaaatcc gcattatttt agtgaaaatt taaaaatgct caaagataac
     4261 aactttttat ataaattggc tcatatttgg aacgaaatgc taacgaaatt tatttccaat
     4321 cgcaatgaca atcctgagtt gggttctttt tgtttaaacc atccgagcca attcgtgtgc
     4381 ggtttcggct aattttattc tggtcgggta atatcgttga cgttttacgt gtaactttcg
     4441 gatttaagtt tctcaagcct aattttttag ccgtttgcat ttttctggat ttaactttag
     4501 ttatcaggcc atcaaaaaca agatttaccc ctgctgaaaa attaatagtt gttgtattat
     4561 aaggaagtac aattttattt tgagaattta atcccacatc cgacaatgct aaagtaattt
     4621 tttgaaaagg aatataatcg gctgataaaa accaattcac aaaaccggtt ttgattccca
     4681 tgccgacacc aacagaactc attcggccat taaacaccga ataactcagc gttccattca
     4741 gccacttata aggtcgggca ttgagcgaag cggttatttc ttcggttaca gttctttttg
     4801 agaagcgaga actggatagc aatccgaaac ttaaaatatt gttcaacaaa ccatattccg
     4861 cagccagatt tagtttggca gttgttccac tcaggtaagt tttcatcgta agttccgaag
     4921 tcgtagatga tttcaataac tgaacaagag aatcggttaa ctggcctgta acaagtcggt
     4981 tgtagacatc ctgcaaagta attagacctg tactgctatc aaattgccgg actccatcaa
     5041 aactgtaatc tatgccatat tgataattat gtacattccg ggtccaattt ataaacccta
     5101 aatcaagaat ggctccagac aaacgaatct tttcattcaa cttatattca gcgccaaaat
     5161 ctacccctgc tcctattccg gaaggtttca accagtctgt aagttttgtt ggagtacgat
     5221 acgcaaaaga ctgaaaatta gcacctatat taacttcaat gggactagac aaattaaccg
     5281 atccattccc tgtcacagtc catttgtcaa ttccggcctt aagattcatt ttccgattcg
     5341 tatttaaaaa attggctgac ccatataaaa atttcagttt gcctccaacg gtccattgtt
     5401 catcaatctt gcgtgacaaa cccacagcgg cttcagtgta aacagaaatg tcagtttgaa
     5461 gtgtggtaaa attatacgag tttgaaagaa tatccggagt tccgtaaaac gaaagtttga
     5521 aaagatcttt aggcagagag agcatgccgt tgactttttc tgaaactgag aaagtccaat
     5581 aatcatcttt atttctgaat ccgaacgcca gcaaattggt ttgaaaatca gcatgcatga
     5641 tggtagatct tttcagcaca ttatagaaat ggtcaacatt tccttgtgga ttcagaaacg
     5701 tgattgtttg tccgttttgt ttatagataa aatctttcag cgcaattgaa ttattaccaa
     5761 tatccaattg actaaaacct attacaggca aactcaggta aaaatcgttc acaggctgaa
     5821 atgagggatt caggtagtgt ctcacaggaa cattttccat aaaataaaga gaatttacct
     5881 gttgcgccct taccgaaagc cgtattaaac ctgataatat cagtataaca aggattcgta
     5941 tgaatctctt tattggcatt ttattatttg ataatggttc ctaatttttc gttcaaatca
     6001 gctttcacaa acaatccaac ctttaaatct aaagtattca actttgtaaa atgaatgtcc
     6061 gactgcacat tctcaccttc aaagcgaact gaaaaatcta ttgatttagc tttcctcagc
     6121 tcaggtattt gagccttagt tactaataaa gtaatggttt ggttagcttc attccccggc
     6181 tgaactattc cattagcatc aacattccca gccggaacag tatagttctt ctcaagatca
     6241 gttagtaatt tctgccccaa tgaatcaaga aattgtaatg agaattgggt ctgaaccggg
     6301 tatccgtttt tgatattcaa aactatggcc actgaactga ttttattaac tgcatattta
     6361 tccaatatcg tcgctaaatc gctaaaaata ttccggatcg tatcacgata ttcgtaataa
     6421 cttcctttat tgagttgaaa aggaattgta tacgtaaaat atacctttac ttttgcatca
     6481 ggtgtaatga agcttggtgt cggatcgttc tgaacaagcg ttttattaat tccggcggag
     6541 aatttatact caatcatatc gggtctgttc acattctcaa acatcaggtt agtttcgccc
     6601 caatctttat caaatgtttt aaaatctttg ctcacgctca aacccggaga tgctggcttt
     6661 gaatcaaact gatcggcaac agaattagcg gtatgatcat aaaaccatgc ataaaccggc
     6721 ggaatggaag aatcagagct aacaaaagct tttatataat caacgttaaa actcaaataa
     6781 gttccaatat tgctaattgc ttttatgtgt aactgaggat ttgtgaattt taattgccca
     6841 gctgggaaaa ctttcccaaa ttcctgtaat cttctatggg taaagcttaa atttgtggct
     6901 gattcaaaat cgccataagc tactgaataa accagttggc taaaacttat gtcacatgtg
     6961 acagcggaat tctgagataa agccagcgga acattgccac tttttgcatc cactctcaat
     7021 aaaagtggaa atccggttgc cccattactt gtgttcagca taaaatcagt aagcggtata
     7081 ttaaccggcc gaccataagt tgctggcaat aaagttatta cgttcgaacc gccaccaaac
     7141 attctaacgc ggtcggtagg cagaataatt gtaattttca ggttggccgg atctatgctc
     7201 ttcatatcgg gagtaacatt tattgtcacg ttcatagata tggaggttac tttaatgcta
     7261 tctattttgt cagtgctctg aggggaatta attcccaaat tcactaaatc agt
//
LOCUS       DATDNM010000070         2854 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_756246, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000070 DATDNM010000000
VERSION     DATDNM010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_756246"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..486)
                     /locus_tag="VI413_01215"
     CDS             complement(<1..486)
                     /locus_tag="VI413_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014299566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEY6913266.1"
                     /translation="MENNYCIIMAGGVGSRFWPFSRNNRPKQFLDFFGTGRSLLQLTF
                     DRLRHLVPAENILIVSNVIYKDLILEQLPEIKADQVLLEPNRRNTAPCIAYAVNRIKA
                     MTDKANIIVAPSDHLIMKETDFLDTIRFGLDFIEKNDCLLTLGIKPSRPETGYGYIQI
                     DE"
     gene            1279..1980
                     /locus_tag="VI413_01220"
     CDS             1279..1980
                     /locus_tag="VI413_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005469382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEY6913267.1"
                     /translation="MKQTESLTNTEILKIISTNRERTNILRKSEQATIAFLVKRIPSW
                     VSSNMLTGIGLMGNVITFLSFVLAAYVNSYYLLLGTLGYAVNWFGDSLDGRIAYYRHK
                     SRKWYGFALDMTIDWLGIMLMGFGFVVYADGPWEIAGFAFVLMYGWEMITTLLRYKIT
                     GKYSIDSGLFGPTEVRIVISMILILEVIFKGSILYISSIATAILFVINMVDTRKLLKL
                     ADECDIREKEQAGNN"
     gene            1937..2398
                     /locus_tag="VI413_01225"
     CDS             1937..2398
                     /locus_tag="VI413_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009433072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEY6913268.1"
                     /translation="MSAISEKKSKLVITNIVARLIIFAKAQVSAFVGGVTDYAIMVFF
                     TEVFHVHYTVSIVIGGVIGAVVNFSLNNKWTFHSENAPYKNSTRKQLFRFVLVVVNSI
                     LLKSTGTYAITTFLGIDYKISRLITDLFVSIGFNYTLQRYWVFKKANKLSV"
     gene            2433..>2854
                     /locus_tag="VI413_01230"
     CDS             2433..>2854
                     /locus_tag="VI413_01230"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6913269.1"
                     /translation="MNIKTAFLGIFLTLIPFFGFSETNSNEILKVVVLDAQNNEPIPY
                     ASIFLPDNGYKTRADAKGMFSINLSNLTLASNKAKISCVGFKPEFVSLSKTDKEITVK
                     LNSLVQDLQEVKVKKQRYQRKNNPAVDLIEKVIANKKN"
BASE COUNT          892 a          481 c          535 g          946 t
ORIGIN      
        1 ttcatcaatc tggatatatc cgtaaccggt ttcggggcga cttggtttaa ttcccagggt
       61 gagcaggcag tcgtttttct caataaaatc aagtccgaac cggatggtat ccagaaagtc
      121 agtttctttc attatcaggt ggtcagatgg ggcaactata atgttagcct tgtcagtcat
      181 ggctttaatg cgatttacag cataagcaat gcaaggtgct gtatttctac ggtttggttc
      241 taaaagtacc tggtccgctt tgatctccgg aagttgttcc agaattaaat ctttatagat
      301 gacattagat acgataagaa tattctcagc gggcactaaa tgacgtaacc ggtcaaaagt
      361 aagctgtaaa agcgagcgtc cggttccaaa gaaatccagg aactgtttag gacggttatt
      421 tcgactgaat ggccaaaagc ggctacctac gccacctgcc ataataatgc aataattgtt
      481 ttccatgaat gtgaaaggtt agagttttga ctcgtgttta ttgtaaaaaa tcggactaag
      541 atactgcgtt tttctgaaga acccaaattt taaaacaaca aaaaaggtag ctgcttcttt
      601 aagtgagagt gagtgtaaag ttaactgcaa taaagcaaga atattagaat aattaaatat
      661 ttaaataaag ttgttattcg tttcattttt tccactgcca atagaatatc attgtcgata
      721 gtttgaaaaa atttaatcca gctaaaatat ttatttgcgg acaaatctac acaaatatct
      781 gctgagtttg aatacctgga aacatgcctc tttatttgta attaactttt atacaatcgg
      841 ttgtattgca gtttacatta ataaacaata taattttgga ccaatgcaaa ataagtagtt
      901 cagtattttc ataatatttc tctattcatt atgggtataa gtgctttatt atttggcttt
      961 tattattact tttgtactct catttccccg tatttatcca gtactattta tcaatgtgaa
     1021 tttatatcgc tttgtttttt aagtatttat atgtgttatt cgtttgctta tttgttctac
     1081 acttcaagat ttgtaggtga aattgaatca aaaaaattca aaaatgagca aaattacatg
     1141 aacttttttt tagaaaaatc atttttgggt tctttaatat gtcatttcag aacccaatat
     1201 tgccgtttga gtaattgcct ttacaaacgc taaaatattt cgtaataatt ttgcaaaaaa
     1261 tacaataaaa ctaaatgtat gaaacaaaca gaaagtctga caaatacaga aattttgaaa
     1321 ataatttcga caaatagaga gcgcactaat atattgagaa aatcggagca agccaccatc
     1381 gcttttttgg tcaagcgtat accgtcgtgg gttagttcta atatgcttac cggcattggc
     1441 cttatgggaa acgtaattac ttttctcagt tttgttctgg cagcttatgt gaatagttat
     1501 tatctccttc tcggcacttt aggctatgct gtaaactggt ttggagactc tctcgatggc
     1561 cgtattgctt actacaggca taaatcaagg aaatggtatg gattcgccct ggatatgact
     1621 atcgattggc tgggaattat gttaatggga ttcggttttg tggtgtatgc agatggacca
     1681 tgggaaatag ccggcttcgc ttttgttctt atgtatggtt gggaaatgat aaccaccttg
     1741 ctccgttata aaattaccgg taaatactct attgattcag gtcttttcgg accaacggaa
     1801 gtcagaatcg tgatctccat gattttaatt ttagaagtaa tcttcaaagg ttccattctg
     1861 tatatttctt caatagcaac agccattctg tttgttataa acatggttga tacacggaaa
     1921 ctattaaaac tggccgatga gtgcgatatc agagaaaaag agcaagctgg taataactaa
     1981 tatagttgcc aggcttatta tatttgcaaa ggcccaggta tcggcatttg tgggtggagt
     2041 aactgattat gccatcatgg ttttttttac agaagttttc catgtgcatt atactgtttc
     2101 cattgtcatt ggaggtgtga taggggcagt tgtcaatttc agcctgaata ataaatggac
     2161 tttccattcc gaaaatgcac cctataaaaa ctcaacgcgt aagcagttgt tcagatttgt
     2221 gttggttgtt gttaacagca tcctcttaaa atcaaccggg acttacgcca taaccacatt
     2281 cctggggata gactataaaa tcagtcggtt aattaccgat ctgtttgtct ccatcggatt
     2341 caattacaca ttacaacgct attgggtttt caaaaaggcc aataagcttt ctgtctaaac
     2401 acaagattac ttttatcgga ttctttttta aaatgaatat aaaaacagcc ttcctcggca
     2461 tttttctgac tcttatccct ttctttggct tttcggaaac aaactcaaac gaaatcctga
     2521 aagtagtggt gctcgacgcc caaaacaatg aacctatacc atacgcatcc atttttttac
     2581 ctgataatgg ctataaaacc agagcagatg caaaaggtat gtttagtatt aatcttagca
     2641 acttaacgtt ggcttcaaat aaggccaaaa tatcttgcgt cggatttaaa ccggaatttg
     2701 tttcattgtc gaaaactgat aaagaaatta cggtgaaatt aaattcgctg gtgcaggatt
     2761 tacaggaagt taaggtgaag aaacagcggt atcaacgtaa aaataatccg gctgtagatc
     2821 taattgaaaa ggttattgcc aacaaaaaga ataa
//
LOCUS       DATDNM010000071         4331 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1076382, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000071 DATDNM010000000
VERSION     DATDNM010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4331
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076382"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(782..1264)
                     /locus_tag="VI413_01235"
     CDS             complement(782..1264)
                     /locus_tag="VI413_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6913270.1"
                     /translation="MPVIIRQIQETDNAPLAKLIRKVFREFKIDMPGTVYTDPTTDKL
                     FELFQAEKSVYWVAEENGKLLGGCGIFPTAGLPKGCAELVKFYLSPHARGGGIGRLLM
                     QVSNNTARSLGYEQLYLESFPQLEGAVSIYLKQGFEYLDAPLGNSGHHACTIWMVKEL
                     "
     gene            complement(1426..2337)
                     /locus_tag="VI413_01240"
     CDS             complement(1426..2337)
                     /locus_tag="VI413_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine acetyltransferase"
                     /protein_id="HEY6913271.1"
                     /translation="MMKPSLLSIIQKNISLLTSDSIPEYEYIPLHDKPLPSLQKLSQI
                     IDLFRIIIFPGYYGESASDVDTLKFHMGVNQERLFSLLKEQLQTGLCFNAPEDQCIES
                     HKLANGIAKALIEKLPELKRVVSTDVKATFDGDPAAKSYGEVIFCYPTIRAVFNYRIA
                     HELLKLDVPVIPRVLTEMAHSETGIDIHPGAKIGEYFSIDHGTGVVIGETSIIGNRVR
                     LYQGVTLGAKRFSLDEDGNPMNTPRHPIIEDNVVVYANTSILGRITIGRDSIIGGNVW
                     LTTSVQPGSRILQQKATVSSFNEGLGI"
     gene            complement(2360..2755)
                     /locus_tag="VI413_01245"
     CDS             complement(2360..2755)
                     /locus_tag="VI413_01245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HEY6913272.1"
                     /translation="MIRIPTHIYDGIVAQAYAELPNEACGLLVGKEGEVAKQHALTNI
                     DHSPEHFSFDPAEQFQVFRSARAEGLEIIANYHSHPETPSRPSVEDIRLAYDPNILYL
                     IVSLAAEIPVLKAFSIQDGISKEIPIEVL"
     gene            complement(2752..2979)
                     /locus_tag="VI413_01250"
     CDS             complement(2752..2979)
                     /locus_tag="VI413_01250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEY6913273.1"
                     /translation="MANYKLDITKEHCPMTFVKTKIELSKLKAGDTLEVLLTEGEPLE
                     NVPRSSTEQGFKVLSVSEAEVKGIHKVVIQK"
     gene            complement(3018..3521)
                     /locus_tag="VI413_01255"
     CDS             complement(3018..3521)
                     /locus_tag="VI413_01255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/DrsH-like family protein"
                     /protein_id="HEY6913274.1"
                     /translation="MATTEIKLDPTTKKLSLISFSGDFDKLVAVFTLATGAAAVGYEV
                     NVFFTFWGLDAIKTKQGRSPVGKGFLPKVFGVFMGGLKSAPVSRLNFGGISPGIFRHL
                     MRKNNVATLEELVEAAKVLGINFYACEMAMHILGIQKSDLIPEVKEVLGVASFLRLAD
                     GGQTLFI"
     gene            complement(3616..>4331)
                     /locus_tag="VI413_01260"
     CDS             complement(3616..>4331)
                     /locus_tag="VI413_01260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEY6913275.1"
                     /translation="VGAGGLGAPIALYLAAAGVGTIGIIDGDVVDLSNLQRQVIHFTP
                     DVDKPKVISAKEKINLINPDVKVVTYQKLLTAENALEIINDYDFVVDGTDNFPVKFLI
                     NDACVIAKKPFSHGGILRFDGQTLTYVPGAACYRCLFHSPPPPNAVPTCSQAGVLGAI
                     AGMLGTIQAAEVLKYLTGVGDLLTNRLLTFNAKTMEFRTIKTKHNDNCPVCGSNPTVT
                     GLVDYEQAVCDIESHRKQK"
BASE COUNT         1142 a          961 c          889 g         1339 t
ORIGIN      
        1 gtgaaatttg ctacttttcg ctcaactaat catatccaac taattataag ctcgttgtta
       61 tattctcttt ttttactttg caaacataca aaaaacaatt aacatactgg tcgttttatc
      121 taaaaataat ctttctttgg atgcagtgat aaaatccaca gtttctgcca gacttacttc
      181 cactaaattt cttctttttt gtttgaaaac atcccgttgc agccatatta gtttgccttg
      241 tttcggcatt caggtatatc aataaagtac cggggcttat ccatgtgatt tcaatgtagc
      301 cggataaaat atcgttgcat aaagttagcc caacgggtcg gttggataag actacgcata
      361 actttgaagg tgtaacaaag tactttgtag cggcttcata gtatctttct atttcttcaa
      421 agtaccttga aggaatagaa aggtaccttg tagtgactaa aaagtactgt gaaggaacta
      481 cattgtgtct tgaagaaact acaaagtact atgtagtgac tacaaagtac cttgaagaaa
      541 cttccgtgta cccgctagaa ctttcaaagt catgtgtccg gacgtgatta acattatgcg
      601 gttttctaac gtgctgaaaa taaactaaaa tgcattttgc acggtttaag cttacttccg
      661 taatttctgc aaaatgccgt gttttggaaa gtgaagtttt tgttcaggaa accactattt
      721 tggttgctga aaaatgaaat attgattaag gttgaagagt tttttggaaa aaagaatggt
      781 actataactc ttttaccatc caaatggtgc aggcatgatg tcccgagttg ccgagtggtg
      841 catccaggta ttcaaatccc tgtttcagat atatggaaac agcgccttcc aattgcggga
      901 aactttcgag gtaaagttgt tcgtagccca aactcctggc cgtattatta cttacctgca
      961 ttagcagccg accaattcct ccacccctgg catgtggaga taaatagaat ttaaccaact
     1021 cggcgcagcc ttttgggagg ccggcagtgg ggaaaatacc acaaccaccc aatagttttc
     1081 cgttttcctc ggctacccaa taaactgatt tctccgcttg aaataattca aacaacttat
     1141 cggttgtggg gtcggtatac actgttccgg gcatatcaat tttgaactcc cggaatactt
     1201 tccggattag ttttgctaac ggtgcattat ccgtttcctg tatttgtctg attataactg
     1261 gcatatagta aaattgacgg gaccacccgg ttgaggtagc ctcgtcaatg aattttagtg
     1321 tttattattc gactgttgtc tctgcttttt ctaacgtaat aaaagacaaa aaattttgca
     1381 gatactgttt tatttatgtt ttttggcaat aattatgcca atagcttaaa ttcccaaccc
     1441 ttcgttgaat gagctgacag tggctttttg ttgcaggatt cttgacccgg gctgaacact
     1501 tgttgttagc cagacgttcc cgccaatgat ggaatcccgt ccgatagtta ttcttcctaa
     1561 aatacttgta ttggcataaa ctaccacgtt gtcttcaata ataggatgtc ggggtgtgtt
     1621 catcggattt ccgtcttcgt ccaacgagaa acgtttggca ccaagggtta cgccctgata
     1681 taacctgacc cggttgccga taatacttgt ttcgccaatc actacacccg taccgtggtc
     1741 gatactgaaa tactctccga tttttgctcc tggatgaatg tcaatacctg tttcggaatg
     1801 ggccatttcg gtaagtaccc gcggaataac cggtacatcc agttttagca gttcatgcgc
     1861 aatgcggtaa ttgaacacgg cccgtatagt tggataacaa aaaatcactt cgccatagct
     1921 tttggctgca ggatcgccat cgaaagtggc tttgacatct gtcgatacaa cgcgtttcag
     1981 ttcaggtagt ttttcaatca atgcctttgc tataccattt gccagtttgt gcgactcaat
     2041 gcattggtct tcgggagcat taaaacacaa cccggtttgc aactgctctt tcagcaggct
     2101 gaataaccgc tcctgattta cacccatgtg aaatttcagc gtgtctacgt cgctggccga
     2161 ttcgccataa tatccgggga aaatgattat ccggaacaaa tcaattattt gcgatagctt
     2221 ttgcaacgaa ggcagcggct tatcgtgcag cggaatatat tcatattcag gaatactatc
     2281 actggttaag agtgatatgt ttttttgaat aatacttaat aatgaaggtt tcataattcg
     2341 ggcattaaag attatactat cacaatactt ctatcggaat ttctttactg ataccatcct
     2401 gaatgctgaa agctttgaga acaggaattt ctgcagccaa cgaaacaatc aggtacagga
     2461 tgttcggatc gtatgccagc cggatatctt caaccgaagg gcgcgaaggg gtttcggggt
     2521 ggctgtggta attggctatg atttccaacc cttcggcccg tgccgaacgg aacacctgga
     2581 attgctcagc cggatcgaac gagaaatgct cggggctgtg gtcaatattg gtcaatgcat
     2641 gttgcttggc cacttcgccc tctttgccaa ccaacagccc gcaagcttcg ttaggcagtt
     2701 cggcataagc ctgcgccact attccatcgt atatatgtgt tgggatgcgt atcatttctg
     2761 aattaccact ttatgtattc cttttacttc agcttcactt accgaaagca ccttgaatcc
     2821 ctgttctgta gaactacggg gcacgttttc gagcggctca ccttcagtaa gcagcacttc
     2881 gagcgtatca cccgctttca gtttcgacag ttcaattttt gtctttacaa aagtcattgg
     2941 gcaatgctct tttgtgatat ctaatttgta gtttgccata atttttcttt tttaggcccc
     3001 tttaggggtt ggggtcatta aataaacagt gtttgtccac catccgccaa tctaaggaag
     3061 ctggccacac cgagtacttc ttttacttcc ggaattaaat cggatttctg aataccgaga
     3121 atgtgcattg ccatttcgca agcataaaag ttgataccaa gtactttggc ggcttcaacc
     3181 agttcttcga gtgttgccac attgttttta cgcattaagt ggcgaaaaat cccggggctg
     3241 ataccgccaa agttcaaccg gcttacgggt gcacttttca gtccacccat aaatactccg
     3301 aatactttgg gcaaaaatcc tttgcctacc gggctgcggc cttgttttgt ttttatagca
     3361 tccaaccccc aaaaggtgaa gaatacattc acttcgtaac caacagctgc tgcgccggtg
     3421 gctaacgtga aaactgctac cagtttgtcg aaatcgccgc taaagctaat cagtgaaagc
     3481 tttttcgtag ttgggtctaa ttttatttcc gttgttgcca tgattatctt tatttgggtc
     3541 tcttatcggg tctcgcgatt tccaaatcgc gtatatataa cattattgcg atttccaaat
     3601 ctcaagaccc atttcttact tttgtttccg gtgactttca atatcgcaaa ccgcttgttc
     3661 gtaatcaacc aaacctgtaa cggtagggtt gcttccacaa accggacaat tgtcgttatg
     3721 ttttgttttg atagttctga attccattgt ttttgcgttg aaagtcaata accggttcgt
     3781 tagtaaatca cctacgccag tcaggtattt caacacttcg gccgcctgga tggttccaag
     3841 cattcctgct atggctccca aaactcctgc ctgcgaacaa gtcggaacgg cattgggtgg
     3901 gggaggagag tggaacaagc agcgataaca agccgcaccc ggcacataag taagtgtttg
     3961 tccgtcaaag cggaggattc ctccgtgcga gaatggtttt tttgcaataa cgcacgcatc
     4021 gtttatcagg aattttaccg ggaaattatc tgttccatct accacaaagt cataatcatt
     4081 tataatttcc aatgcgtttt cagccgtcaa taacttctgg taagtaacca ctttcacgtc
     4141 gggattgatc aaatttattt tctcttttgc cgaaatgact ttcggcttat ctacatcggg
     4201 ggtaaaatga ataacctggc gttgtaggtt gctcaaatcc accacgtcgc cgtcgataat
     4261 tccaatcgta cctacgccgg cagcagccag ataaagcgca ataggcgcac ccagtccgcc
     4321 cgcaccaact a
//
LOCUS       DATDNM010000072         2451 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1397402, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000072 DATDNM010000000
VERSION     DATDNM010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1397402"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..416)
                     /locus_tag="VI413_01265"
     CDS             complement(<1..416)
                     /locus_tag="VI413_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle receptor subunit
                     alpha"
                     /protein_id="HEY6913276.1"
                     /translation="MGLFNFFSKEKKETLDQGLSKTKESVFSKLTRAVAGKSKVDDEV
                     LDNLEEVLITSDVGVETTLRIIERIEKRVAQDKYVNTTELNAILKAEIASLLAENNSD
                     SPADFDAVLPTKPYVIMVVGVNGVGKTTTIGKLAHQ"
     gene            complement(581..733)
                     /locus_tag="VI413_01270"
     CDS             complement(581..733)
                     /locus_tag="VI413_01270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005638125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4295 domain-containing protein"
                     /protein_id="HEY6913277.1"
                     /translation="MAKKAVASLQKGEGRAFAKVIKMVKSPKTGAYMFQEEIVHNDKV
                     KDYFVK"
     gene            complement(743..931)
                     /gene="rpmG"
                     /locus_tag="VI413_01275"
     CDS             complement(743..931)
                     /gene="rpmG"
                     /locus_tag="VI413_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012573149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEY6913278.1"
                     /translation="MAKKSKEARIQVILECTEHKESGMPGTSRYITVKNRKNTPARME
                     LKKYNPILKKVTVHKEIK"
     gene            complement(951..1190)
                     /gene="rpmB"
                     /locus_tag="VI413_01280"
     CDS             complement(951..1190)
                     /gene="rpmB"
                     /locus_tag="VI413_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005857630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEY6913279.1"
                     /translation="MSKICQITGKKAMVGNNVSHSKRRTKRTFDVNLFTKKFYWVEQD
                     TWISLNVSANGLRTINKIGLDAAIKKASEKGYLYA"
     gene            complement(1348..>2451)
                     /locus_tag="VI413_01285"
     CDS             complement(1348..>2451)
                     /locus_tag="VI413_01285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide amidohydrolase family
                     protein"
                     /protein_id="HEY6913280.1"
                     /translation="DADHIVESLQMALKRADIVLFTGGIGPTNDDITKQTLARFFDTK
                     LVYDETVLRNIEQLFSTRPNFVINELTRAQAMVPEKCTVIQNLVGTAPVTWFEKDGKV
                     IVSMPGVPYEMKHVMDTEILPRLQNYFRTPSIVHKTVQVYGYGESALALKIADWENAL
                     PENVSLAYLPNYGVVKLRLSGISEDVLALEFSMNQQIDKLSQILGDAIVAYEDISIEI
                     LMGNLLKSKGLMASTAESCTGGNIASRFTSIPGSSDFFKGSVVAYSNEVKTNVLQVSS
                     GDLEKHGAVSQIVVEQMAVGVRRLLKSDVAIATSGIAGPTGGTVEKPVGTVWIAVCSD
                     DKIVSKEYRFGALREQNIQRATQAALLLLKEII"
BASE COUNT          709 a          554 c          364 g          824 t
ORIGIN      
        1 aactgatgag ccaatttgcc aatagtcgtt gtttttccaa ctccattcac acccactacc
       61 atgataacat agggttttgt cggcaaaaca gcgtcaaaat cggctggtga atcagaatta
      121 ttttctgcca gcaatgatgc aatttctgct ttaagaattg cattcagctc ggtagtattc
      181 acatatttat cttgcgccac ccttttttca attctttcga ttattctcaa agtggtttca
      241 acgccaacgt cagacgtaat gagcacctct tccagattat caagcacttc atcatcaact
      301 tttgattttc cggccacggc acgtgtcagc tttgaaaaaa cgctttcttt ggttttcgat
      361 aaaccctgat cgagtgtttc ctttttttcc ttactaaaga aattaaataa acccatattt
      421 ttcaattaag aattcacaat tataccatca acacattagc actttggcat attgataatt
      481 agcttacaaa attaagtctt ttttctgagc aaacagcaaa aaaaaacctc tcatttctat
      541 aaatgagagg attctttcta tttttaagaa cgaaaatgaa ttattttaca aaataatctt
      601 tcactttatc gttgtgtaca atttcttcct ggaacatata cgcaccggtt tttggtgatt
      661 tcaccatttt aataaccttt gcgaatgcac gaccttcacc tttttggaga gatgctaccg
      721 ctttctttgc catgattcaa tattatttaa tttctttatg aactgttact tttttcaaaa
      781 tggggttgta ttttttcaac tccatacggg ccggcgtgtt ttttctgttt ttcacagtaa
      841 tataacgtga agttccgggc attccgcttt ctttatgctc tgtgcactcc aaaatcactt
      901 ggattcttgc ttctttcgat ttttttgcca tggtgtaatt ctcctactaa ttatgcgtat
      961 aaataccctt tttctgacgc ttttttgatg gcagcatcca atccaatttt gttaatggta
     1021 cgtaatccat tagctgatac atttaagcta atccaggtat cttgctcaac ccaatagaat
     1081 ttctttgtaa acaggttcac atcaaaggtt cttttggtac ggcgttttga gtgtgatacg
     1141 ttgtttccta ccattgcttt tttaccggta atctgacaaa tttttgacat ttctatatct
     1201 ttttattgtt tacatttttt ctcaaaaaca gtgtgcaaaa gtacactata tttttcattt
     1261 atacaagcat ttccagctat taatttcaat aattatccca cacccaccca acaaataatt
     1321 caaccagctg ataattcagc atttaaatca aattatttct ttgagtaaga gcaacgcagc
     1381 ttgtgttgcc cgttgaatat tttgttcgcg taacgctcca aaacgatact ctttactaac
     1441 aattttatca tcagaacaca ctgcaatcca aacagttcca actggttttt ctacagttcc
     1501 tccggtaggt cccgcaatcc ccgaagtggc aatcgcaaca tccgatttca ataacctgcg
     1561 aacaccaaca gccatttgtt caacgacaat ctgactcact gcgccatgtt tttccaaatc
     1621 cccagacgaa acctgcagaa catttgtttt cacttcgttt gaataagcaa caacagaacc
     1681 tttaaaaaaa tctgaacttc ctggtattga cgtaaatctg gatgcgatat ttccaccagt
     1741 gcaactttca gcagtggagg ccatcaatcc tttcgatttc aacaaattac ccatcaaaat
     1801 ttctattgaa atatcctcat atgcaacgat agcatcacca agtatctgac tcaatttatc
     1861 aatttgctga ttcattgaaa attccaatgc aagcacatcc tccgagatac cactcaatcg
     1921 caattttacg acaccatagt taggcaaata agccaacgaa acattctccg gcaatgcatt
     1981 ttcccaatca gcaattttca acgccagggc ggattcccca tatccataga cctgaacggt
     2041 tttatgaact atcgacggag ttctgaaata attttgcaat cgtggaagta tttccgtatc
     2101 cattacatgt ttcatctcat atggtactcc cggcattgaa acaatcactt ttccgtcctt
     2161 ttcaaaccag gtaaccggag cagttccaac caggttttga ataaccgtgc atttctcggg
     2221 aaccattgcc tgagccctgg ttaattcatt aatcacaaaa tttggccggg tcgaaaaaag
     2281 ctgctcaata ttccgaagaa cagtttcatc ataaactaat ttagtatcaa aaaaccttgc
     2341 gagcgtctgc tttgtaatat catcgttagt cggtcctatt cctccggtaa ataaaacaat
     2401 atcagccctt ttcaaagcca tttggagcga ttctacgata tgatcggcat c
//
LOCUS       DATDNM010000073         2737 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1183987, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000073 DATDNM010000000
VERSION     DATDNM010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1183987"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1264
                     /locus_tag="VI413_01290"
     CDS             <1..1264
                     /locus_tag="VI413_01290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007484350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015616 - DNA translocase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEY6913281.1"
                     /translation="LEYDIMLSLAATGIRIIAPIPGKGTIGIEVPNADPQVVSMHSII
                     ASKKFQESKFELPVAFGRTITNDIFMVDLAKMPHLLVAGATGQGKSVGLNAIITSLLY
                     KKHPSQLKLVLVDPKKVEFNIYGDIEKHFLAKLPDGDDAIITDTSKVVETLNSLCKEM
                     DDRYDLLKKAHVRNIKEYNEKFFIRHLNPEKGHRFLPYIVVIVDEFGDLIMTAGKEVE
                     MPIARIAQLARAVGIHMIIATQRPSVNIITGVIKANFPARVAFRVSSMIDSRTILDSP
                     GANQLVGRGDMLFSQGNDLTRVQCAFVDTPEVENIVHHIREQQAYPTAFYLPEYTGDG
                     GEGIDVSSVDMSKRDPLFEEAARLIVANQQGSTSLIQRKFSIGYNRAGRIVDQLEVVG
                     IIGPFEGSKARQVLVMDDYHLEQILKNL"
     gene            1363..2001
                     /locus_tag="VI413_01295"
     CDS             1363..2001
                     /locus_tag="VI413_01295"
                     /inference="COORDINATES: protein motif:HMM:NF015510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA];
                     GO_process: GO:0044874 - lipoprotein localization to outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein carrier protein LolA"
                     /protein_id="HEY6913282.1"
                     /translation="MKKNIIYAFILVLFSATNISAQNNPQAEKILSDLLLSAKTSAIK
                     TNFKLATNDKNTSQAVATGTFTLKGNKFVLDMDDMKVWFDGKTQWAYNQQNNEVSITE
                     PTEKELSDTNPMAILSAYKAKCLIKFSNKTKSAQNHCIEMTPKVKNKDIAKIEVQVNK
                     TNANLFSIKLINTNGSTSLLTVNNFQNGLKVADNFFVFNQSKYKGISVNDLR"
     gene            2110..>2737
                     /locus_tag="VI413_01300"
     CDS             2110..>2737
                     /locus_tag="VI413_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009276260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6913283.1"
                     /translation="MKTNMNEKVRCLIIGSGPAGYTAAIYASRANLSPILYEGMQPGG
                     QLTTTNEVENFPGYPTGITGPELMEDLKKQAERFGADIRFGMATATDLSAAPYKVTID
                     GEKVIEADTIIISTGATAKYLGLPDEQKYAGSGVSACATCDGFFYRKMTVAVVGGGDT
                     ACEEATYLAGLASKVYLIVRKNFLRASKIMQDRVFNNPKIEVLFEHETL"
BASE COUNT          858 a          574 c          569 g          736 t
ORIGIN      
        1 cctggaatac gacattatgc ttagccttgc tgcaaccggg attcgtatca ttgcgccaat
       61 tccgggcaaa ggaaccattg gtattgaggt tccaaatgcc gatcctcagg tagtttcgat
      121 gcactcgatt attgcttcca aaaaattcca ggaatcgaaa tttgaactcc ctgttgcctt
      181 tggacgaacc attactaatg atattttcat ggtggatttg gctaaaatgc ctcacttgct
      241 ggttgcaggt gctaccggac aaggtaaatc ggttggattg aatgcgatta ttacatcgct
      301 gctttataaa aaacacccat cgcaactgaa gctcgtattg gttgacccta aaaaggtgga
      361 attcaacatt tatggggata tagaaaagca cttccttgcc aaattaccgg acggcgatga
      421 tgccattatt accgacacca gcaaagtggt ggaaactttg aactcgcttt gcaaggaaat
      481 ggacgatcgt tacgacttgc tcaaaaaagc gcacgttcgt aatattaaag aatacaacga
      541 gaaattcttt atccgccatt tgaatccgga aaaaggacac cgcttcctac catatattgt
      601 ggttattgtc gacgagtttg gtgacctgat tatgactgcc ggaaaagaag tagaaatgcc
      661 tattgcccgt attgcccagt tggcccgtgc ggtgggaatc cacatgatca ttgccactca
      721 acgtccatcg gtaaacatta ttaccggggt gattaaggct aacttccctg cccgtgtagc
      781 attccgcgtt tcgtccatga ttgactcgcg aaccattctc gattcgccgg gtgccaacca
      841 gttggttggt cgtggcgata tgcttttctc gcaaggaaac gatttaaccc gtgtgcaatg
      901 tgcatttgtt gatacgccgg aagttgaaaa tatcgtgcat catatcaggg aacagcaggc
      961 atacccaaca gccttctatc tgccggaata taccggtgac ggaggcgaag gaatcgatgt
     1021 aagttcagtg gatatgagta aacgtgaccc gctttttgag gaagccgccc gtttaattgt
     1081 tgctaaccaa caaggttcaa catcgcttat ccaacgtaaa ttctccattg gctacaaccg
     1141 tgcaggacgc attgttgacc agctggaagt ggtcggcatt attggtccgt tcgaaggcag
     1201 caaagcccga caggtgctgg ttatggacga ttatcatttg gaacaaatcc tgaaaaattt
     1261 ataatttaag gagaacttgc gtgcgaggtc tctgtcattt caagtcaacc attttattgg
     1321 tatgttcttt gtaaagaaaa tgccaaatta aactccaaca atatgaaaaa aaatattatt
     1381 tacgccttca ttctggttct tttctctgct actaacattt cggcacaaaa caatcctcag
     1441 gctgaaaaaa tccttagcga tttacttttg tcggcaaaaa ccagtgccat caaaacaaac
     1501 ttcaaactgg ccacaaacga caaaaacact tcacaagcag tcgcaaccgg tacattcacg
     1561 cttaaaggga ataaatttgt attggacatg gatgatatga aagtgtggtt tgatggcaaa
     1621 actcaatggg cctataacca acaaaataat gaagtctcca ttactgaacc aacagaaaaa
     1681 gaactctccg atacaaaccc aatggccatt ttgtcggctt acaaggctaa atgcctgata
     1741 aaattttcaa ataaaacaaa atcggcacaa aatcattgta ttgaaatgac gcctaaagtc
     1801 aaaaacaaag acatcgcaaa aattgaagtt caggttaaca aaacaaatgc aaatctgttt
     1861 tccatcaagt tgattaacac aaatggaagt acgtcgttgt taactgtcaa taattttcaa
     1921 aacggattga aagttgcaga caatttcttt gtctttaacc aatcaaaata caaaggtata
     1981 tctgtaaacg atttgcgtta atcgatttta tttataaacc gatagaggtt tcggcttaaa
     2041 aaaattaccg gatttttaat tacacagcaa cattatactt tatctttgca aaaaaaaaca
     2101 gaacaagata ttaagacaaa tatgaacgaa aaagtacgct gcctaatcat aggctcagga
     2161 cctgccggat atacggctgc catttacgct tcacgtgcaa atctatcccc tatattatac
     2221 gaaggtatgc aaccgggcgg acagttgaca acaaccaacg aagtggagaa tttcccgggt
     2281 tatccaaccg gaataaccgg accggaattg atggaagact taaagaaaca agctgaacgc
     2341 tttggtgccg atattcgttt tgggatggca acagctaccg atttatctgc agcaccatac
     2401 aaagttacaa ttgatggcga aaaagttatt gaagccgaca ccatcattat ttcaaccggt
     2461 gcaaccgcga aatatttggg cttaccggat gaacaaaaat atgctgggtc tggagtttcg
     2521 gcctgcgcta catgcgatgg atttttttat cgcaaaatga ccgttgccgt tgttggtggt
     2581 ggcgatacag cctgtgaaga agcgacttat ctggccggac ttgcaagcaa agtgtatctg
     2641 attgttcgta aaaacttttt gcgcgcatct aaaatcatgc aggacagagt tttcaacaac
     2701 cccaaaattg aagttttgtt tgagcacgaa acacttg
//
LOCUS       DATDNM010000074         2309 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_756975, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000074 DATDNM010000000
VERSION     DATDNM010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_756975"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /locus_tag="VI413_01305"
     CDS             <1..242
                     /locus_tag="VI413_01305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6913284.1"
                     /translation="ILAIDDYDVWDKLETIECPVLILGATKDKFHVHDETRKMVSLLK
                     NCSYADIEDNQRSHSAEAAVLIRGYIKSTTAHKPG"
     gene            complement(255..1340)
                     /locus_tag="VI413_01310"
     CDS             complement(255..1340)
                     /locus_tag="VI413_01310"
                     /inference="COORDINATES: protein motif:HMM:NF023327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3419 family protein"
                     /protein_id="HEY6913285.1"
                     /translation="MAALFDFGISQEDATTEQFVLGVKPTDRILSVASGGEVPLSLLS
                     LNDNITICAVDLSENQIRLCRFKLMAAIHLDFPLNGQFLGYAELKGKIRSKFYREYIR
                     PHLSAGDSLFWDQNLKHIENGIVNAGRFEQYIQKMRFIVNLFIGKQNLNQLINCKTLE
                     EQKMIFNEKIVTRKSLQLLFKIAFHPTIYKNRGLQEQALIHAEKTTGERFYSKFEDFC
                     TSGLASGNYFLQYFLTGSCITKESFPAYLQPANKNRFMNNLNGLEFQATSFQNALNEK
                     EKGYYNKIHLSNLGDWMNGEDFAQLLDQLRRKCNPETKICYRYLQKNHFPENGLVNFS
                     IDKNLSALAQKQDRFPFYEILSITMQP"
     gene            complement(1343..>2309)
                     /locus_tag="VI413_01315"
     CDS             complement(1343..>2309)
                     /locus_tag="VI413_01315"
                     /inference="COORDINATES: protein motif:HMM:NF013641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913286.1"
                     /translation="PDFQKASDTGLRILFNRLQIMLEGKPFKIISRNLMQGKVHFTFY
                     VLPFDTSQLEIVSRWGKKRFYIAKVQEAVDTLTREGAVCLSLGAHTSIITGNGLNLAE
                     HESCKILTGNTLTVASCIYYLNQYLKNSSTRAHKPRTIAVVGASGNIGSGLVECLADP
                     IYNQYEIILAGNNEKRLEKLKDKMPASNSAIRCTNDLFELKRADIIICCANTNDHIIY
                     PHHLQTGNQVFIIDISVPGAVADEVKPLKNIIFCKDASSVFLHDNPYMLFSTHTPEGK
                     TFCCAGESILYGLNHLQIPMKGHINKEAVSELVQLAMSEKFFNLK"
BASE COUNT          613 a          450 c          520 g          726 t
ORIGIN      
        1 ctattcttgc cattgatgac tatgatgtgt gggacaaatt ggaaacgatt gagtgtcctg
       61 ttttgattct tggtgcaacg aaagataaat ttcatgtaca tgacgaaacc cgaaaaatgg
      121 tttcgttgct aaaaaactgc agctatgcag atatagaaga taatcaacga tcgcacagtg
      181 cagaagccgc agtgttaatc cgcgggtata taaagtccac cactgctcac aagccgggct
      241 gaaacccgta tttatcaggg ttgcatagtg attgaaagta tttcgtaaaa tgggaacctg
      301 tcctgttttt gtgctaaagc agataaattc ttatcgatgg agaaattgac gagtccattt
      361 tctggaaaat gatttttttg aagatagcgg taacatattt tggtttcagg attacatttt
      421 ctcctcagct ggtccaataa ttgggcaaaa tcttccccgt tcatccaatc gccaagattt
      481 gacaaatgga ttttgttgta gtatcctttc tctttttcgt tgagtgcatt ttgaaacgat
      541 gtagcttgga actccaaacc gttgagattg ttcatgaacc ggtttttgtt tgctggctgc
      601 agataggccg gaaaagactc tttagttatg caacttccgg tgagaaagta ttgcagaaag
      661 taatttccgg aagctaaacc ggaagtgcag aaatcttcga atttgctgta gaatcgttcc
      721 cctgtagttt tttcggcatg gataagtgct tgttcctgca gacctctgtt tttgtagatg
      781 gtaggatgga aagctatttt gaatagtaac tgcaaacttt tgcgggtgac aatcttttca
      841 ttgaaaatca ttttttgttc ttctaaagtt ttgcagttta tgagttggtt taaattctgt
      901 ttaccgataa ataaattgac aataaatctc attttttgga tgtattgctc aaaacggccg
      961 gcatttacaa tcccattttc aatgtgtttc aggttttgat cccagaaaag tgaatcgcct
     1021 gcagagaggt gagggcggat gtattcccgg taaaatttgc tccgtatctt tccttttagc
     1081 tctgcatatc ccagaaactg accgttcagc gggaaatcaa gatgaatggc tgccatgagt
     1141 ttaaaccggc acaatcttat ttgattttct gataggtcta ccgcacagat cgtaatattg
     1201 tcgttcaggc ttaacagcga taacggaact tcccctccgc tggctacaga aaggattctg
     1261 tcagtcggtt ttacacccag aacgaattgt tcagttgtag catcttcctg ggatattcca
     1321 aagtcaaaga gtgcagccat aattatttca gattaaagaa tttttcagac atagccagct
     1381 gaaccaattc gctgacagct tctttattta tatgcccttt cattgggatt tgcaggtggt
     1441 tcagtccgta taaaatgctt tcgccggcac agcaaaaggt ctttccttcg ggagtatggg
     1501 tactgaaaag catatacgga ttgtcgtgca aaaaaacaga agaggcgtct ttgcagaaaa
     1561 taatattttt cagaggctta acttcatctg ctactgcgcc tggaaccgat atgtcgataa
     1621 taaatacctg attgcctgtt tgcaggtgat gcgggtaaat gatatggtcg ttggtgttgg
     1681 cgcaacaaat aataatgtcg gcacgcttta attcgaaaag atcgttggtg catctgattg
     1741 ctgagttact ggccggcatt ttatccttta gtttctccag gcgcttttcg ttgtttcctg
     1801 ccagtataat ttcgtattga ttatagattg ggtcggcgag gcattcgacg agaccggaac
     1861 cgatattgcc acttgctcca actactgcaa tggttcgcgg cttgtgtgcc cgggttgaag
     1921 agtttttcag gtattggttc aggtaataaa tacatgaggc gacagtaagt gtgtttcctg
     1981 tcagtatttt gcatgattca tgttctgcca gatttaaccc attgccagtg atgatggacg
     2041 tatgggcacc caggctcagg caaacagcac cttcccgcgt cagtgtgtcc acagcctcct
     2101 gaaccttggc gatgtaaaat cgttttttgc cccaacggct cactatttcc agttgcgaag
     2161 tgtcgaaagg aagaacataa aatgtaaaat gcactttccc ctgcatcaga tttctgctga
     2221 taatcttgaa tggcttgcct tcgagcatga tttggagacg attgaataaa atgcgcaagc
     2281 cggtatccga tgccttttga aagtccggc
//
LOCUS       DATDNM010000075         2418 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2038646, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000075 DATDNM010000000
VERSION     DATDNM010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2418
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2038646"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            795..1226
                     /locus_tag="VI413_01320"
     CDS             795..1226
                     /locus_tag="VI413_01320"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY6913287.1"
                     /translation="MLPVFKSRTLPGLFDEFFGSNLLPNYIEEGAWKSTPAVNIYETN
                     EKFEIEIAAPGLDKEDFKIDLKEEYLMVYSEKKDKKEEKEKGKVVRTEFRYSSFQRSF
                     ALPKNIDVAAIQATHKNGILKIELPKKVEQKENGTRQIEIQ"
     gene            complement(1304..1792)
                     /locus_tag="VI413_01325"
                     /pseudo
     CDS             complement(1304..1792)
                     /locus_tag="VI413_01325"
                     /inference="COORDINATES: protein motif:HMM:NF004064.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0009972 - cytidine deamination [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
     gene            1876..>2418
                     /locus_tag="VI413_01330"
     CDS             1876..>2418
                     /locus_tag="VI413_01330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009126020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004040 - amidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEY6913288.1"
                     /translation="MIEVMNNYRLLILFLLLTINGVAASRQFTREEYIQKYYPLAISE
                     MHRSGIPASITLAQGCWESQNGNSRLATEANNHFGIKCKEEWKGKTIHHDDDAKHECF
                     RSYQHAEASYIDHTDFLMTRDRYAFLFKLDPKDYVGWAKGLKQAGYATDPTYAERLIK
                     IIEENKLYLYDEYGDKQPIAS"
BASE COUNT          814 a          418 c          443 g          743 t
ORIGIN      
        1 tgcgtaaatt gatagaacaa aggtaggctt ttaaggttgc gaaaccaact atttcaattt
       61 aattgtgtca tcattaaatt tgggtaaaca tgttaaaaga tcgacctcta ttcaagtcga
      121 agaacaggtt gcaaatcact attgagcatt tatcaattga aggtttatta gtttttcata
      181 ccaccttgcc tctttggttt ttccatctaa aaaattgatt tttattcttt ctaaaactga
      241 tatttaaaac cttaaggtga ccttaatcta ccaatggtta ttagaagatc attcgaaggt
      301 ggttcgaagg ttattcgaag ttgatacaat taaattcgaa taaccttcga ataactttct
      361 aataattaat gattaagttt ctaatgatta ttggtggttg agagttggga taattaattt
      421 tcttaatgtg aaagaaatta tttctaattg gaatatatat ttcctgttgc cacccatcta
      481 aatagcacaa gatctttctt gttgaaaaaa ctttagttta tctaagcaac tacttttaag
      541 tgtagacccc gttaaatgaa aatgaaactg caaatgacct tcagatttgg tgtttggaga
      601 tcaacagaac gataaagtcg gtttaagcag aaaaaatgtc attatatttt ttttaatgta
      661 gaatatttga cagctaaaat gactttatga cactaaagat cagctgtata gcctttggca
      721 tttcctttga aataagggat attgaaaaca ataaaaaatc aataattatc acttaaagaa
      781 tggaggatta aactatgtta ccagtattta aaagcagaac attacccgga ttatttgatg
      841 aattctttgg cagcaacttg cttccaaatt atattgaaga aggagcctgg aaatcaactc
      901 cggctgtaaa catttatgaa accaacgaga aatttgaaat tgaaattgca gctccaggat
      961 tggataagga agatttcaaa atcgacctta aagaggaata tttaatggtt tattctgaaa
     1021 agaaagacaa aaaagaggaa aaagaaaaag gcaaggtagt acgtaccgaa tttaggtatt
     1081 cttccttcca acgttcattt gccttaccaa aaaacattga tgttgccgcc attcaggcaa
     1141 cccacaaaaa tggaatatta aaaattgaat tgccaaagaa agttgaacaa aaagaaaacg
     1201 gcacaagaca gatagaaatc caataatttt tgagtagatt ttaataggat tagattttaa
     1261 taaaaaggga ttgtaccacg gtggtacaat ccctttcttc tttttacaaa tcttttcttg
     1321 agaaacttaa tggcaacaaa ctttctaccc cttgcagcat aagaatggaa tcctggccat
     1381 ccaaaatgat gcgtataggt ttttgaaacc ttacttccgt ttcggccagg gcttgtcggc
     1441 atgaaccgca tggtttgact gtatctttta ccaatgcgcc atttttagct gccgaaacgg
     1501 cgatggtcaa tacttccgaa tcaggataat tggcattggc ataaaacatg gcaacccttt
     1561 cagcacataa accggaagga taagctgagt tttcctgatt gttgcccgtg attattttac
     1621 cgtttcccaa caaaatggca gcaccaacat gaaaccccga ataaggagca taagccattg
     1681 aggtggcctt tcttgcttct gccagtaaat gctggtcatc tgaagggagt tcctttatat
     1741 tagcaaattc gtgtacaata attttaattt ctgtcgtttt cattgataaa ttgtttgctc
     1801 caaaagtacg ctaatagttc ttatttcaca attaactttc gtgacaacat tttcttattt
     1861 ttgccaaaca cacgtatgat tgaagttatg aataactacc ggttactgat actgtttttg
     1921 cttttaacga ttaatggggt tgctgcctca agacaattca ccagggagga atatattcag
     1981 aagtactacc cattggccat ttccgaaatg cacagaagcg gcattcctgc cagtattacc
     2041 ctggcccagg ggtgctggga atcccaaaat gggaacagcc gccttgcaac agaagcaaac
     2101 aatcatttcg gcattaaatg taaggaagaa tggaaaggaa aaaccattca tcatgacgat
     2161 gatgccaaac atgaatgttt cagaagctat caacatgccg aagcttcata tatcgatcac
     2221 actgactttt taatgaccag agatcgttat gcctttttgt ttaaacttga ccctaaagac
     2281 tatgtaggct gggccaaggg attaaagcag gccggttatg caacagatcc cacttacgct
     2341 gaacggttga taaagatcat tgaggagaat aaattatatc tgtacgatga atatggtgat
     2401 aaacagccta ttgcatca
//
LOCUS       DATDNM010000076         4969 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_437204, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000076 DATDNM010000000
VERSION     DATDNM010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4969
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_437204"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1817)
                     /locus_tag="VI413_01335"
     CDS             complement(<1..1817)
                     /locus_tag="VI413_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NPCBM/NEW2 domain-containing protein"
                     /protein_id="HEY6913289.1"
                     /translation="MNIRKKVLQVTDLFAAAGAQAQNPITQTIYTADPAHPINYKLKM
                     NTTSKSIFTLVFAIISLVSISTLSAQTVWLDELDLSPTTQGWGIPKKNRSVDGNIMTI
                     AGKTFERGFGTHAESSLFIQLDGKANSFTAQVGIDEEVKGRPSSVEFIVYGDGVKLWS
                     SGIMHEGDIARLCSVKLSGVKQLELRVTDAGSGDSDHANWADAKFEASGVASFVTFYP
                     VSSEPYILTPKPSAKPKINSASVFGVRPGSPFQFRIPATGDRPMTFLVTDLPQGLKLD
                     QKTGLITGKLEKAGTYVVQLKAKNAKGIAEKSLRIICGDKIALTPPMGWNSWNCFAGE
                     VSGEKVKRAAEAMVKTGLVNYGWDYVNIDGYWQNNRDSKDPDLQGKLRDEAGNIVPNK
                     RFGDMKALTDYVHGLGLKIGIYSSPGPWTCDGGAGSYGYEKQDADTYAKWGFDYLKYD
                     WCSYGGVLNGIPDNDPNKVVSISYNGGYQLSTAVKPYKIMGEYIHQQPRDIVFSLCQY
                     GMSEVWKWGDSVGGNSWRTTNDITDNWSNVKGIALAHDQSAAWAKPGNWNDADMLVVG
                     YVGWGNLHPSLLRPDEQYLHVSLWSLFSTPLLIGCDLEKL"
     gene            complement(1995..3596)
                     /locus_tag="VI413_01340"
     CDS             complement(1995..3596)
                     /locus_tag="VI413_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006799187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase 43 family protein"
                     /protein_id="HEY6913290.1"
                     /translation="MIKTFLSCVALLSCMFFLNNVHAQQATNPIIFADVPDMSMIRVG
                     KNYYMSSTTMHMNPGVPIMKSTDLVNWKIINYAYDTLADMPELNLTEGKNTYGKGSWA
                     SSLRYHKGMYYVTTFAQTTGETYIFKTKDIEKGNWQRVSFKPSLHDHSLFFDDDGKVY
                     LIHNAESLKIIELNEDLTGIKQGVAERVLIDNASAPTGKEVGLGAEGSQLFKVKGKYY
                     LFNICAPRGGMRTVLIHRADNINGPWEGRVGLQDRGIAQGGLIDMPDGRWFSYLFRDF
                     AAVGRVPYLVPVKWEDGWPVLGVNGKVPDTLDLPASTGLIPNLVASDEFKRKKGEAAL
                     PLVWQWNHNPDNKLWSIKERKGFLRLKTGRIDTLFTQVRNILTQRTIGPTCTGSTLLD
                     VSKMKEGDFAGLCVFQKKYGQVGVKVENGQKSIVMLSAGLDKPVEVQQIPLTQDYIYL
                     EIDCDFTGMNDEATSLWTLNGKDEAKFSYSLDGKVWNPIGNILKMIYDIPHFMGYRFG
                     LFNYATKNTGGYVDFDFFHITDTIQ"
     gene            complement(3850..>4969)
                     /locus_tag="VI413_01345"
     CDS             complement(3850..>4969)
                     /locus_tag="VI413_01345"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 5 protein"
                     /protein_id="HEY6913291.1"
                     /translation="TQLGSLYPSYNLSPIAPDSTGMNSTAWQLAAKMQMGMGINFGNT
                     MESPQEADWQNSKLTESYVKFVKSLGFNSVRLPCNWAWTHLSDRSKAKIDPAWLARVK
                     EVVGWCVANDMYVILNSHDSSNANAIKQDSVNAMQKAIWQQIATAMRDFDEHLIFAGL
                     NEPPAEDAQQMAILNGYHETFIKAVRSTGGRNSYRVLVVQAPSTDQNKAATLMKTLPA
                     DKVPNKLMVEVHDYTPSVFTIVLDGDKSWGNMVYYWGAGNHSTIEPDRNATFGEEDAV
                     NVELQKMKVNFVDKGIPVVLGEYAAFRRTPDYTKYTPMDMDMHNKSINYWTYFVTKQI
                     IAHGILPFYWEQGPVLDRLNNTVLDHGIYGSLVEAYKK"
BASE COUNT         1375 a         1145 c          910 g         1539 t
ORIGIN      
        1 agcttttcca aatcgcaccc aattaacaga ggagtagaga aaaggctcca aaggctgacg
       61 tgaagatact gctcgtctgg tctgagcaag ctcggatgaa ggttacccca gcctacatat
      121 cctacaacca gcatgtccgc atcgttccag ttaccgggtt tagcccaggc tgcagactga
      181 tcatgagcta atgcaatgcc tttaacgttg gaccagttgt ccgttatatc attcgttgta
      241 cgccagctgt ttccacctac cgaatcgccc catttccaaa cctccgacat tccgtactga
      301 cacaagctga aaacaatgtc gcggggttgc tgatggatgt actctcccat tattttgtat
      361 ggttttacgg cggttgacaa ttgataacct ccattgtaag atatggagac tactttgttt
      421 gggtcgttat caggtattcc atttagcact cctccatagc tgcaccaatc gtatttcaga
      481 taatcgaaac cccatttggc ataagtatcg gcatcttgct tttcatagcc ataactaccg
      541 gcaccgccat cacaggtcca gggaccagga ctggaataga tgccgatctt caaaccgaga
      601 ccatgcacat agtctgtcag ggctttcata tctccaaacc ttttattagg aactatatta
      661 ccagcctcgt cccgcagctt accttgcagg tcgggatctt tcgaatcgcg gttattttgc
      721 cagtatccgt caatatttac ataatcccat ccgtaattta caagtccggt tttaaccatt
      781 gcttccgcag cgcgcttaac tttctcacca gaaacttctc cagcgaaaca attccaacta
      841 ttccaaccca ttggcggggt aagtgcaatt ttatctccac agataatgcg taaacttttt
      901 tcggctatcc ctttcgcatt ctttgccttc aactgaacaa cgtaagtgcc ggctttttca
      961 agcttaccgg tgataagtcc tgttttttga tccagcttta gtccctgagg caagtcggta
     1021 accagaaagg tcattggccg atctccggtg gcaggtatcc tgaactgaaa tggcgagccc
     1081 gggcggacac cgaaaacgct tgcgctatta attttcggtt ttgccgatgg cttaggggta
     1141 agaatgtagg gctcacttga gacaggataa aaagtaacaa aacttgccac accagacgcc
     1201 tcaaattttg catctgccca gttggcatga tcactgtcac cgcttcctgc gtctgttacc
     1261 cgcagctcaa gttgtttcac acccgaaagt ttcacactac atagccgggc aatatcacct
     1321 tcatgcatta taccgctcga ccaaagcttc actccatctc cgtatacaat aaactctacg
     1381 gaggacggac gccctttcac ctcttcatca atgccaacct gcgcagtaaa cgaatttgcc
     1441 ttaccatcga gctgaataaa aagagaactt tccgcatgtg taccaaagcc acgctcaaag
     1501 gttttgcctg cgatagtcat aatgttgcca tcaaccgacc tatttttttt aggtatgccc
     1561 cagccctgtg tagttgggct gagatccagt tcatctaacc aaacagtttg tgcggaaaga
     1621 gtacttatgc ttactaagct gataatagcg aaaacaagcg taaatatgct tttacttgtt
     1681 gtattcattt ttaatttata attgatagga tgcgctggat cggctgtata aattgtttgt
     1741 gtaatcgggt tttgagcctg cgcccccgct gcagcaaaaa gatctgttac ctgcaatact
     1801 ttttttctga tattcattgt tgttctaaat gtgtgtgtga tacgtatgaa aatctccgta
     1861 ataaattttc aatctgaatt tttatttaaa atttacggat aaaagcaaaa atacttccat
     1921 cctgtatgca attcgacaag tttatatttt taaaattatg taatccttgt ggatcacata
     1981 atttataggc gttatcactg aattgtatcc gtaatatgaa agaaatcaaa atctacatat
     2041 ccgccggtat ttttggtcgc ataattaaac aagccaaaac gataccccat aaaatgtggg
     2101 atgtcgtata tcattttcaa gatatttcca ataggattcc acacttttcc atctaagctg
     2161 tacgagaatt tagcttcgtc tttcccatta agagtccaaa ggcttgtagc ttcatcgttc
     2221 atgccggtaa aatcgcaatc aatctctaaa taaatgtagt cttgtgtcaa aggaatttgc
     2281 tgcacctcta caggtttatc taaaccggca cttagcatta ctatcgattt ttgaccattt
     2341 tcgaccttta ctccaacctg tccgtatttt ttttgaaaga cacataatcc tgcgaaatca
     2401 ccttccttca ttttggaaac atccaacaaa gttgaaccag tacatgttgg gccaattgta
     2461 cgttgcgtaa gtatatttct tacctgtgta aataaggtgt caattcttcc tgttttgagg
     2521 cgcaggaatc cctttctttc ttttattgac caaagtttgt tatctggatt atgattccat
     2581 tgccatacta aaggaagtgc tgcttctcct ttttttcgct tgaattcatc agaagcaacc
     2641 aaattcggaa tcaaaccggt actggcaggt aggtctaaag tatccggaac tttaccattc
     2701 actcctaata caggccagcc gtcttcccac ttaacaggaa cgagataagg aacgcgacca
     2761 acagcagcaa aatcgcgaaa aagataagag aaccaacgtc cgtctggcat gtcgataagt
     2821 ccaccttgag ctattcctct atcctgtaag ccaactcttc cttcccaagg gccgttaata
     2881 ttatctgccc tatgtataag tacagttcgc attccacccc gtggcgcgca aatattaaat
     2941 agataatatt tcccttttac tttaaataat tgagatcctt cagctccaag acctacttct
     3001 tttcctgttg gtgcgctggc gttatcgatg agaactcgct ccgcaacgcc ttgcttaatt
     3061 cctgttagat cctcatttaa ttcaataatt tttagacttt ccgcgttatg aattaaatat
     3121 acctttccat catcatcaaa aaatagagaa tggtcatgga gggatggctt aaaagaaact
     3181 ctttgccagt ttcctttttc tatatctttt gttttaaaaa tataagtttc acctgtggtt
     3241 tgtgcaaaag tggttacata atacattccc ttgtggtagc gcaaactact tgcccatgaa
     3301 cctttaccgt atgtgttttt tccttctgtc aaatttagct ccggcatatc tgccaaagta
     3361 tcataggcat agttgatgat tttccaattg acaagatccg tagatttcat aatgggtaca
     3421 cccgggttca tgtgcatcgt tgtactgctc atataataat ttttaccaac cctgatcata
     3481 gacatatcgg gaacatcagc aaaaatgatt ggattggttg cttgttgtgc atgaacatta
     3541 tttagaaaaa acatgcaact caaaagcgca acgcaggata aaaaagtttt gatcattatt
     3601 taaaaatgta taattgcaat tactgttatt ctatttagtg ttgttctcct ttttggtttt
     3661 ctaagcagct tcgctggcaa ccgacaatac accttctttt agtttgtata attttttgta
     3721 gtaataatgt gaattgatta attattcttt aagctacagt aacaaagagg ttaatccttc
     3781 ccagaaacta gcaaacgttc aaccaatctc tgggaaggga aataacctta tgctataatt
     3841 gacactatac tatttcttat atgcttcaac tagggagcca taaattccat gatcaagcac
     3901 agtattgttt aggcggtcta aaacgggacc ttgttcccaa tagaatggca gaataccatg
     3961 tgctataatc tgtttggtca caaaatatgt ccagtaattt atagatttat tgtgcatatc
     4021 catatccatt ggagtatatt tggtataatc gggagtccgc ctaaaggctg catattcgcc
     4081 cagcaccaca gggatacctt tatcaacaaa attcactttc atcttttgta attcaacatt
     4141 gaccgcatcc tcttctccaa aggtggcgtt gcgatccggc tcaatagtag aatgatttcc
     4201 ggcaccccag tagtaaacca tgttgcccca acttttatct ccatccaata ctatcgtaaa
     4261 tacagaaggc gtgtagtcat gcacctcaac catcaacttg ttaggaacct tgtctgctgg
     4321 aagagttttc atcaaagtag cagctttatt ttggtcagtg ctaggtgcct gcacaaccag
     4381 cacccggtaa ctgtttctgc ctccggtaga gcgaactgcc ttgataaatg tttcgtgata
     4441 accattaagt attgccatct gctgagcatc ttcagccgga ggttcattca agccggcaaa
     4501 aataaggtgc tcgtcaaaat cgcgcatcgc tgtagcaatc tgctgccaaa tcgccttttg
     4561 catcgcatta acagaatctt gcttaattgc attggcattg gaactatcgt gagaattcag
     4621 tatcacatac atatcattgg ccacacacca tccaaccact tctttcaccc gcgcaagcca
     4681 tgcagggtca atttttgcct tactcctatc gcttaaatgg gtccaagccc agttacaggg
     4741 aagccgtaca gagttgaacc ctaaactttt tacaaatttc acatacgatt cagtcaattt
     4801 actattctgc caatcagctt cttgtgggga ttccatggta ttcccaaaat ttattcccat
     4861 tcccatttgc atttttgctg ccagttgcca ggcggtgcta ttcattcctg ttgagtcggg
     4921 agctataggc gataaattat atgatgggta taaactacct aattgagta
//
LOCUS       DATDNM010000077         4825 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1504891, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000077 DATDNM010000000
VERSION     DATDNM010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4825
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1504891"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VI413_01350"
     CDS             complement(<1..233)
                     /locus_tag="VI413_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445006.1"
                     /note="23S rRNA m2A2503 methyltransferase; methylates the
                     C2 position of the A2530 nucleotide in 23S rRNA; may be
                     involved in antibiotic resistance; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEY6913292.1"
                     /translation="MNKTPLAGKTLDELKTVVSELGMPSFTAKQLSDWIYKKRAFSID
                     EMTNISAKNRASLSEKYEIGRTEPVQVAESKDGT"
     gene            complement(378..2492)
                     /locus_tag="VI413_01355"
     CDS             complement(378..2492)
                     /locus_tag="VI413_01355"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HEY6913293.1"
                     /translation="MATLEKIRSKGVLLVVVVGLALLAFIVGDFLNSGSSYFNKSRET
                     VAKIVGEDINIKDYTAAIEQMTEVYKIETGKTELNEETMTQLRQSVWENMVNERILYA
                     EAKKLGLAVSPDELSDRLIGKNIHPLIQQRRTFAGENGQFSHQALVQFLSSLEQAPAN
                     EEMKQQIAKAKSYWMFWEKNVKTSILQEKYNTLIAKAVTANSLDAKMSYQDRKVSVDV
                     AYVVKPYYSIPDSVVKVSDSEIKDRYNKQKEQYKQEANCAIKFVAFDIKPMKEDYKEA
                     EVWMNKLVDEFKTTTDVAGLVNSNSDVMYDGRAYSEKTVPASLKDFAFGGAAGAVLGP
                     IFANDTYTMARIMESGIMQSDSVKLRHIFLVEKDAAKADSLIAAIKGGADFAALAKQY
                     SAVQQTAANGGEIGWLTENVQGMDKEITTNAFSKPVNEVFTIKNAQGVQIMQVTEKTP
                     ARHKVKLAILERKVVASSKTYSKIYNDAKQFAVDLKSENFDSKAKEKGYIVRPAADIL
                     QSVDRIADIPQSRQIVRWIFNNKIDKVSDVFDCGSQFVVVVNTEKNDKGYRSVEKVSD
                     QLKAEIIKDKKAELMIKNLTEQLAKNPSLEALAASMNDSVKVAAGVNFAAYQFGVAGF
                     EPTVIGKSTVVALNKVSAPIKGNAGVFVIRTGNKVENPQPFDARMEKMQLNGRMSYSL
                     PYMIIQDLKDKADIVDNRLNFF"
     gene            complement(2668..3918)
                     /locus_tag="VI413_01360"
     CDS             complement(2668..3918)
                     /locus_tag="VI413_01360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005646522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEY6913294.1"
                     /translation="MDSFTYIFLTLSLSAFFSGLEIAFVTSNKLRFELDKQQRNLTSA
                     ILSIFYRNPQQFISTMLVGNNISLVIYGLLMAKVMTPWLSPIGNQFLITLLQTIFATA
                     IVLITGEFLPKTIFRVNPNLWMRIFSWLLLFFYVSLYPVSRFGTWVSMGILKLFKVQI
                     SQSTQENVFTRIDLNYLIQETFENKDSEKELENEVKIFQNALDFSKVKLRDCYVPRTE
                     IMALDYNSSVEVLKQTFIETGLSKIPIYKGDVDNIIGYIHSSEMFEHQKDWRKQINQI
                     PIVPENMAAQKLMKTFMLQKKSIAVVVDEFGGTAGIITLEDIMEEIFGEIEDEHDTRD
                     YLAKKITDNEYLLSGRLEVRAANLKFNLNIPETDDYETIAGFILHNHQHFPKVNEVVR
                     IEGYTIRCVKVTNNRIELVKITTG"
     gene            4217..4289
                     /locus_tag="VI413_01365"
     tRNA            4217..4289
                     /locus_tag="VI413_01365"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4250..4252,aa:Lys,seq:ttt)
     gene            4321..4393
                     /locus_tag="VI413_01370"
     tRNA            4321..4393
                     /locus_tag="VI413_01370"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4354..4356,aa:Lys,seq:ttt)
     gene            complement(4510..>4825)
                     /locus_tag="VI413_01375"
     CDS             complement(4510..>4825)
                     /locus_tag="VI413_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEY6913295.1"
                     /translation="ADDVAVKILQKMVKQRKESAQIYTEQNRPELAQNELAEAYVIEK
                     YLPVQMTDAELEAAVAAIIAQVGAVGPQDMGKVMGVASKQLAGKTEGRLISEKVKALL
                     AK"
BASE COUNT         1370 a         1035 c          838 g         1582 t
ORIGIN      
        1 gtgccatctt tcgattcagc aacctgaacc ggttcggtgc ggccaatctc gtatttttcg
       61 ctgagtgaag ctctgttttt ggcagagata tttgtcattt cgtcaatgct gaaagcacgc
      121 tttttataaa tccagtccga caactgttta gccgtaaaag acggcatgcc cagttccgaa
      181 acaacggttt ttaattcgtc aagtgttttg cctgcaaggg gagttttatt catttggaga
      241 taagttgata agtgaattag ctaactggtt tatggctttt atgtctttcc gcaaagttac
      301 acaaacttaa cgacaaaaag aaaacggaat gaaattactc actccgtttc ctgtatttca
      361 attatatcgt tttgttatca gaagaaattc aaacgattgt ctacgatatc tgctttgtct
      421 ttcaaatcct ggataatcat ataaggcaat gaataactca tacggccgtt caactgcatt
      481 ttttccattc ttgcatcaaa tggttgtggg ttttcaactt tattgcccgt gcggataaca
      541 aatacacctg cattaccttt gattggagca gaaaccttat tcagtgcaac tacagttgat
      601 tttccaataa ctgttggttc aaaacctgca acaccaaact gataagcggc aaaatttaca
      661 cctgcagcta ctttcaccga atcattcatt gaggccgcca atgcttcaag cgaaggattt
      721 tttgccaatt gctcagtcag gttcttaatc atcaactcag cttttttatc tttgatgatt
      781 tcagctttca actgatcaga cactttctct accgaacggt atcctttatc atttttctct
      841 gtgttcacta caaccacgaa ttgtgatcca caatcgaata catccgatac tttgtcaatt
      901 ttattattga atatccaacg tacaatctga cgtgattgag ggatatcagc aatacggtct
      961 acactttgca ggatatcagc tgcagggcga acgatatatc ctttttcttt tgctttgctg
     1021 tcgaagtttt ctgatttcag gtcaacggca aattgtttgg catcgttgta tattttgctg
     1081 taagttttgc tgcttgcaac aactttacgt tccaaaatag ccagttttac tttatgacgg
     1141 gctggagttt tttctgttac ctgcataatt tgtactcctt gtgcattttt tatagtaaac
     1201 acttcgttta ccggtttgct gaaagcattt gttgtaattt ctttgtccat tccctgaacg
     1261 ttttcagtca accagcctat ttcaccacca ttggcagctg tttgctgaac ggctgagtat
     1321 tgttttgcca aagcagcaaa gtcagcacca cctttaatag cagcaataag gctgtcagct
     1381 tttgcagcat ctttttcaac aaggaagata tgacgcaatt ttactgaatc cgattgcatg
     1441 atacctgatt ccataatgcg ggccatagta tatgtatcgt ttgcgaatat cgggccaaga
     1501 acggcacctg ccgctccacc aaaggcaaaa tctttcaacg aggcaggaac tgttttttca
     1561 gaataagcac gaccatcgta cattacatct gagttagagt ttaccaatcc ggctacatca
     1621 gtggttgttt taaattcatc caccagttta ttcatccaca cttcagcttc tttgtaatct
     1681 tctttcatcg gtttgatgtc aaaagcaaca aatttgattg cacagttagc ttcttgtttg
     1741 tattgttcct tttgtttgtt gtaacggtct ttgatttcac tatcgcttac ttttacaact
     1801 gaatcgggaa ttgaatagta tggtttcaca acatacgcca catctacact taccttacgg
     1861 tcctgatagc tcatttttgc atcaaggctg ttagcagtaa ctgctttagc aataagtgta
     1921 ttgtattttt cctgcaaaat gcttgttttc acattttttt cccagaacat ccaatagctt
     1981 tttgccttgg caatctgctg tttcatttct tcgttagcag gagcttgctc caggctactc
     2041 aaaaactgaa ctaaagcctg atggctgaat tggccgtttt cgccggcaaa agtacgacgt
     2101 tgttgaatca gagggtgaat attttttcca atcaggcggt cagaaagttc atccgggcta
     2161 actgcgagac ctaatttttt agcttcagca tacaaaattc gctcatttac catgttttcc
     2221 cacaccgatt gacggagttg agtcatggtt tcttcgttta attctgtctt gccggtctca
     2281 atcttataca cttctgtcat ttgttcgatg gcggcagtgt aatctttgat attgatatct
     2341 tcacccacaa tttttgcaac cgtttcacgc gacttattaa agtacgatga tcccgaattc
     2401 aggaaatcgc ctacaataaa ggcgagtaac gcaagtccta ccactactac cagtaaaact
     2461 cctttgcttc taatcttttc taatgttgcc attttttgaa attaatttgt attttttgtt
     2521 ttaatttttt cagtattttt gagggcacga atatacaaaa aaaaagttta tgcccgtgct
     2581 atttctaaat ttttctgcat tttttaagtc tatgactgcc gtttacagaa tataacagcc
     2641 ctgattttct ttaatttcgg aaaaattcta tccggtagtt atcttcacca attcaatccg
     2701 gttattggtt accttcacgc aacgaatggt atacccttca atacgaacaa cttcgttcac
     2761 ctttgggaag tgctggtgat tatgcaaaat aaatccggct atcgtttcat aatcatctgt
     2821 ttcaggaata ttcaggttga acttcagatt agcagctctc acttccaacc tgcccgaaag
     2881 caggtattca ttatcagtaa tcttcttcgc cagataatca cgtgtatcat gttcgtcttc
     2941 aatctcccca aaaatttcct ccataatatc ttccagggta ataatacccg ccgttccgcc
     3001 aaactcatcc accactactg caatactttt cttttgtagc ataaaggttt tcatcagttt
     3061 ttgtgctgcc atattttcag gaacaatcgg tatttggtta atctgttttc tccaatcctt
     3121 ctgatgttca aacatttcag aagaatgaat ataaccaata atattatcga catctccttt
     3181 gtaaatagga atctttgaca agcccgtttc aataaatgtc tgcttcaaca cttcaacact
     3241 ggagttataa tccaacgcca ttatttcagt tcgcggcaca taacagtcgc gcaatttcac
     3301 ttttgagaaa tcgagtgcat tctgaaatat ctttacttca ttttccaact ccttctcact
     3361 atccttattt tcaaaagttt cctgaatcaa ataattcaga tcaatacggg taaatacatt
     3421 ttcctgtgtc gactggctta tctgcacttt aaacagcttc aaaataccca tcgacaccca
     3481 tgtgccaaaa cgggacaccg gatataaact aacatagaaa aaaagtaata accacgaaaa
     3541 aatgcgcatc caaagattcg gattcacccg aaatatggtt ttaggaagaa attctccggt
     3601 gataagaaca atagctgtgg cgaaaatagt ttgaagtagc gtaatgagaa attggtttcc
     3661 aatcgggctg agccatggag tcatcacttt agccattagt aagccataaa taaccagact
     3721 aatattattt ccaacaagca tagtggatat aaattgctgt ggattgcggt aaaaaatgga
     3781 caaaatagca gatgtcaggt tacgttgctg cttgtctaac tcaaaacgca gtttatttga
     3841 ggtaacaaaa gcaatttcca atcccgaaaa gaaagccgag agcgaaagag tcaaaaagat
     3901 atatgtaaaa ctgtccaaaa ttagtctgtt ctatataaat taacgccgtt atgactgcaa
     3961 agatacaata ttttactatc cacaagccaa taaatatcga aaattacacc tcctcaaagt
     4021 gacatttcct taaaaaaaac aacgaataat aagtgttatc cgaatagaat tgaagcataa
     4081 tatcattttt atttattttc aaattattgt attcctgaac attaaaaact aaatacgaaa
     4141 taatccggtt tttattgccg tgcacatttg tgagtttaaa aaaaagccgt atctttgcaa
     4201 ccgctttcga gaaaacgatc tagtagctca gcaggtagag cacatccctt ttaaggatgg
     4261 ggtcctgggt tcgagcccca gctggatcac ttagttttcg aaacgcacac aaagtttgat
     4321 gagctagtag ctcagcaggt agagcacatc ccttttaagg atggggtcct gggttcgagc
     4381 cccagctggc tcacgagtca aagccttccg attaatttcg ggaggcttct ttgttttcag
     4441 gaacatcaga acacaaaaaa aatccctcat ttcaattaaa atgagggatt tttcagtatt
     4501 aaaaagtctt tatttcgcca ataatgcttt tactttttca gagatcaggc gaccttcggt
     4561 tttaccggca agttgcttgc tggctactcc catcactttt cccatatcct ggggtccgac
     4621 agcaccaacc tgagcaataa tggccgcaac agctgcttcc aactcagcat cggtcatttg
     4681 aaccggcaaa tatttctcaa ttacgtatgc ttcggccaat tcattttggg caagttccgg
     4741 ccggttctgc tccgtataaa tctgagcaga ttctttacgt tgtttcacca ttttctgcaa
     4801 aattttcaca gccacatcgt cagct
//
LOCUS       DATDNM010000078         2207 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1504971, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000078 DATDNM010000000
VERSION     DATDNM010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1504971"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            215..1321
                     /locus_tag="VI413_01380"
     CDS             215..1321
                     /locus_tag="VI413_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEY6913296.1"
                     /translation="MISKNSILPFYARAGIFLIGLSALLAILYIAQGIIVPLIFSFII
                     AVLLHPVVNLFVRFKINRIISIIITLLIALIIIIGFSIFIYNQAANFSDSWPILVKRF
                     TLIVDQTISATSEYLNIRPSIIHAWISKTQHELVNIDGTLVGQTLVSVGGSLATIFIV
                     PVYVFVILYYQPLLMEFIHRLFGKTHLVQVTEIITQTKSVIQRYLVGLFFEAIIVGVL
                     NAAGLLLLGIEYAILLGVIGALLNLIPYLGGIVAVALYMMVALVTKSSAWFAVYVFGI
                     HIFIQLIDNNYIVPKIVASKVKINALFSIIVVLVGNALWGIPGMFLSIPLLAIVKVIF
                     DHIESMKPWGFLFGDTMPPLIKKKKKKQVNNENH"
     gene            1357..1830
                     /locus_tag="VI413_01385"
     CDS             1357..1830
                     /locus_tag="VI413_01385"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY6913297.1"
                     /translation="MKTNKIKKVLIALDYDPTAKKVAEAGVALAKAMEAEITLLHVIV
                     DPSLYASAYDSMGVWQIDKEYTLDTFENIKSSSRHFLEKAKRHLGDPTIQTIQKEGDF
                     AYSILETANELDIDIIVMGSHSHKWLENIIMGSVTEEVLRKSTIPLFIVPTKKRE"
     gene            1885..>2207
                     /locus_tag="VI413_01390"
     CDS             1885..>2207
                     /locus_tag="VI413_01390"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEY6913298.1"
                     /translation="MKGNIKMMTLLLNSLLADEFTFIHQYLLHSKMCGSWGYSKLHEA
                     IRKQAMDEMLHAEWLIERIIFLDAIPIVSKLNPMKIGKTVLEMINNDNVDELNSVRAY
                     NEAIVL"
BASE COUNT          691 a          375 c          429 g          712 t
ORIGIN      
        1 cctgattgag aacatggtgg gtgctattac agggctggca agtgggtatg tgtcaaaaaa
       61 aaattgctgt aggaacatcg cataacatat ttagaaaaat tatgggttct gtgcttcagt
      121 ttacggttac aaacctggta gctcaacatc cggacattct aaaaaatctt ggtcaaatta
      181 ttatcgaaaa gatatttcat aaagccgaaa aaacgtgatt tctaaaaatt ccatattacc
      241 cttttacgcc agggccggca ttttcttaat tggcctgtct gccctgttag caatattata
      301 tatagctcag ggcattattg ttccactgat attttccttt attatagctg tattacttca
      361 tccggttgtc aatttatttg ttcggtttaa aataaacaga attatttcca ttatcataac
      421 actgcttatt gctctgataa tcattatagg tttcagcata tttatttata accaggctgc
      481 aaattttagt gattcgtggc caatccttgt aaagagattt acattgattg tggatcaaac
      541 cattagcgcc acttctgaat atctgaatat cagaccttcc attatacatg cctggatttc
      601 taaaacccag cacgaactgg tcaatatcga tggcacatta gtggggcaaa cccttgtaag
      661 tgttggaggc agcctcgcta ccatatttat agttccggtg tatgtttttg tcatacttta
      721 ctatcaaccg ctcttaatgg aatttattca ccgccttttt ggtaagacgc atctggttca
      781 ggtaactgaa attattactc aaacgaaatc tgttatccag cgctatctgg tcggattgtt
      841 ttttgaagcc atcattgttg gggtactcaa cgctgccgga cttttgctgc ttggaattga
      901 atatgctatt ttgttaggtg ttatcggtgc tttgctcaac ctgattccat atttaggcgg
      961 aatagtggcc gttgcattgt atatgatggt agcgttggtt accaaatcat cggcatggtt
     1021 tgccgtttat gtttttggta ttcatatttt cattcaactg attgacaaca actatattgt
     1081 accaaaaatt gttgcttcta aagtaaaaat aaatgcgctg ttttctatca ttgtagtact
     1141 tgtgggaaat gcactttggg gaataccggg gatgtttctt tccattccgc tattggccat
     1201 tgttaaagtc atttttgacc atattgaatc gatgaagccc tggggatttt tattcggaga
     1261 caccatgccg ccattaataa agaagaagaa gaagaagcaa gttaataatg agaatcatta
     1321 agccgtaaac aataaataaa aaacaattat tatcgtatga aaactaacaa aataaaaaaa
     1381 gtattgattg cactggatta tgacccaact gcaaagaaag tagccgaagc gggagttgca
     1441 ttggctaaag cgatggaagc agaaatcaca ttgctgcatg ttatagttga tccttcattg
     1501 tatgcttctg cctatgatag tatgggtgtt tggcaaatag ataaggaata tacacttgac
     1561 acatttgaaa atattaaatc cagctcccgg cattttctgg aaaaagcgaa acggcatttg
     1621 ggagatccaa cgattcaaac cattcaaaag gaaggtgatt ttgcatattc aattcttgaa
     1681 acggccaatg aactggacat tgacattatt gtcatgggtt ctcacagcca taaatggtta
     1741 gaaaacatta ttatgggtag cgttacggaa gaagtgttga gaaaatcaac tattccgttg
     1801 ttcattgtcc caacaaaaaa gagagaatag ggcaaaatac ggtaagtatt atgcaacttt
     1861 tcaaatttta aaaaaaatac gattatgaaa ggtaatataa agatgatgac cttattattg
     1921 aattccttac tggctgatga atttacattc atacaccagt acctgctaca ttcaaaaatg
     1981 tgtggcagtt gggggtattc aaaactacat gaggctatca gaaaacaggc aatggatgaa
     2041 atgcttcatg ccgagtggct tattgaacga attatctttt tggatgctat accaattgtt
     2101 tcaaaactta atccgatgaa aattggtaaa acagttttag aaatgattaa taacgataat
     2161 gttgacgaac ttaattctgt tcgtgcttat aacgaagcca tagtact
//
LOCUS       DATDNM010000079         2892 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_650705, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000079 DATDNM010000000
VERSION     DATDNM010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_650705"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..1184)
                     /locus_tag="VI413_01395"
     CDS             complement(51..1184)
                     /locus_tag="VI413_01395"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEY6913299.1"
                     /translation="MNTRPYTFDRVVRMLIGLTVLVLLFLLMKRLSSVLLPFLIAWLL
                     AYLLQPIVHFFQHKLKFKSRVLSIAATLIGFLGIITAVVWVLTPIITSEIQKVSRLIL
                     DYSQNLNVNSFLPLSWQNEIRNYLSHLDIQSILQDENIMAGIKRLAPQLWDLIYGSVD
                     FVLGLAVVLVVFLYLVFILLDFENISTGMVGIIPVKYRTLVVEIIEDMETGMNRYFRG
                     QSLIGLIVGVLCAIGFTIIQLPLAIVAGLLIGLLTIVPYLKVVGLIPCAILGLLQSVE
                     TGRSYVSILLGIIIVFVVVQMIEDLFLTPKIMGKVTGLNPAVIMLSLSIWGSLMGMVG
                     LIIALPVTTLIISYYKRFVLNDTIEEETEPLVDEPEQPTNVEM"
     gene            complement(1227..1808)
                     /locus_tag="VI413_01400"
     CDS             complement(1227..1808)
                     /locus_tag="VI413_01400"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004797 - thymidine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HEY6913300.1"
                     /translation="MIYSEKNHPNQQRRGSIEVICGSMFSGKTEELIRRLKRAKFAKQ
                     EVEIFKPKIDTRYSEDEVVSHDRTAIRSTPVESSGSILLMSGDVDVVGIDEAQFFDEG
                     LVDVCTKLADQGIRVIIAGLDMDFRGVPFGPMPALCAIAEDVYKVHAICVRCGALAYI
                     SHRLVESDKRVLLGEMREYEPICRECYNKTKAV"
     gene            1966..2763
                     /locus_tag="VI413_01405"
     CDS             1966..2763
                     /locus_tag="VI413_01405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913301.1"
                     /translation="MNRKLLVTLLRKDIQELDMITEGFMEMNEYPKAIILLSQRKADD
                     IQSYIKQLAELKTDANPSEDVIPSKVEIYEVEEKPIPAETIIQEPVIDKNSEEQVPEE
                     VQTEQDFTIELLEGEEMPAVESTENTVELIVEQPIIEQPVYELAIEEIKPVAEETRKT
                     VLSERAVTGVPSRNETLSKTDNSIGAILANKKIDDIKHAINIGERFRFQRELFKGNGE
                     DMNKTLNYINQLATLAEVQSFLDSKYNWAEDNESVEDFYQIVRRRFL"
BASE COUNT         1001 a          628 c          498 g          765 t
ORIGIN      
        1 cggctgaata cttattattc accggcttct tttattttaa acagcatttt ctacatttcc
       61 acatttgttg gttgttccgg ctcatccacc aacggctccg tttcctcttc aatagtatca
      121 ttcaacacaa atcgtttata atacgagatg attaacgtgg taacaggcaa tgcaattatc
      181 aacccgacca tccccattaa tgaaccccaa attgaaagtg acagcataat aacagccgga
      241 ttcaaacctg ttactttacc cattattttg ggtgtcagga aaaggtcttc tatcatttgc
      301 accaccacaa aaacaataat aatgcccaac agtatggaga cataactacg accggtttcc
      361 acagactgca acaatccgag aattgcacag ggaatgagac caaccacttt caggtaagga
      421 acgatagtca gcaagccaat taacaatcca gccacaatag ccaacggcaa ctgaataata
      481 gtaaaaccaa tagcacataa tacccctaca atcaacccaa tcaatgactg tcctctgaaa
      541 tagcgattca tgccggtttc catatcttca ataatttcca caacgagagt tctgtattta
      601 accggtataa ttcctaccat tcctgtcgag atattttcaa aatccagcaa aataaagacc
      661 aaatacaaaa acacaacaag aaccacagca agccccaaaa caaaatcaac tgaaccataa
      721 atcaaatccc acaattgcgg agccagccgt ttaatccccg ccataatatt ttcatcttgt
      781 aaaatagatt gaatatccag atgtgaaaga taattccgga tttcattttg ccatgaaagt
      841 ggcaaaaacg aattgacatt caaattctga ctataatcaa gtatcaaacg ggatactttc
      901 tgaatttcac tggttataat tggagtcaaa acccagacaa cagctgtaat aattcctaaa
      961 aagcctatca atgtggctgc aatagaaagc acacgacttt taaatttcag tttatgttga
     1021 aaaaaatgaa cgatgggttg taagagatac gccaacaacc aggcaataag aaaaggcagt
     1081 aaaacactac tcaatcgttt catcaaaagg aaaagcaata ccagtactgt caagccaata
     1141 agcattcgca caacgcgatc aaaagtataa ggtctcgtat tcattttatt tattggttaa
     1201 ttcgttgatt cgtaaacaaa aagcaattaa accgcctttg tcttattata gcattctcgg
     1261 caaataggct catattctct catttcaccc aacaataccc gcttatcact ttcgaccaac
     1321 cgatgtgaaa tataagccaa cgctccacac cgtacacata tagcatgaac tttataaaca
     1381 tcttcggcga tagcgcaaag cgccggcatg ggtccaaacg gaacaccgcg aaaatccata
     1441 tccagtccgg caataatcac acgaatgccc tgatcggcaa gttttgtgca aacatccacc
     1501 agcccttcat caaaaaactg agcttcatct atcccaacca catccacatc gcccgacatg
     1561 agcaaaatgc ttcctgacga ttcaaccggc gtagaacgaa tagctgtgcg gtcgtgcgac
     1621 accacttcat cttcagaata acgggtgtca attttaggtt taaaaatttc cacttcctgt
     1681 ttggcaaact tagcacgctt caaccgcctg atcagctctt ctgtttttcc tgaaaacatg
     1741 gagccacaaa taacttcgat acttcctcgt ctttgttgat ttggatggtt tttttcagag
     1801 taaatcatgg tgttttattg aaaattagtt gttctttttt ttcttatctc tttcgtttat
     1861 tgtaccttta cagccggttg caaatggcct gaattttgtt attccaacat agcagggcaa
     1921 aattaaagaa aataataaga taaaaattgt tttagcagaa aagatatgaa cagaaagtta
     1981 ttagtgacct tacttcggaa agatatacaa gaacttgaca tgattaccga aggatttatg
     2041 gagatgaatg aatatccgaa agccatcatc ttgctgtctc aacgtaaagc cgacgacatc
     2101 caatcttata ttaaacaatt ggccgaatta aaaactgacg cgaatccgtc agaagatgtg
     2161 attccgagta aagttgaaat ttatgaggtt gaggaaaagc cgatccctgc agaaactatt
     2221 attcaggaac ctgttatcga caaaaattcc gaagaacaag ttccggaaga agttcaaaca
     2281 gaacaagact ttacgataga actgctcgag ggagaagaaa tgccggcagt agaatcaact
     2341 gaaaacacag ttgaattaat cgtcgagcaa ccaatcattg aacagcctgt ttatgagtta
     2401 gctattgaag aaataaaacc ggttgcagaa gaaacaagaa aaacggtttt gagcgaaaga
     2461 gctgttaccg gcgttccatc ccgaaatgag acactgtcaa aaacggataa ttccattgga
     2521 gcaatactgg caaataaaaa aatagatgat attaaacacg ccataaacat tggggagcgt
     2581 tttcgttttc aacgggagct atttaaaggt aatggtgagg acatgaataa aacactgaac
     2641 tacataaacc agttagccac attggccgaa gtgcagtctt tcctcgattc taagtacaac
     2701 tgggcagaag ataatgaatc ggttgaggac ttctaccaga ttgtgagaag acgatttcta
     2761 tgattcaatt catcggacca gaaagcaatg agctaaaact ttcatatttt tcgactctta
     2821 atccatctaa ctttcaactc cttttttaat gaaattatac gtagttccca cgccggtcgg
     2881 aaacctggaa ga
//
LOCUS       DATDNM010000080         2147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_757737, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000080 DATDNM010000000
VERSION     DATDNM010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757737"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            43..>2147
                     /locus_tag="VI413_01410"
     CDS             43..>2147
                     /locus_tag="VI413_01410"
                     /inference="COORDINATES: protein motif:HMM:NF024977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6913302.1"
                     /translation="MRLETRNLLLAINKEEQQEAIMLTEIAEIDAVKQFGVLKANYLG
                     SQADVDSAYNDFISWKVARQENTRLAVLGEVEKVKESIQADGRVGSFREGMIEHLNTI
                     DHFAQNKAVSLFAESKKIKEDLTRNLILCVLAIIILSLVIVYLLVLSVRTPIKELISV
                     TDRFKEGNLNARSSLTLKNEFGNLAESFNEMVEKIQTDVELTLKTERINSSMLTVDNS
                     HLFFREFLPVFRELTNSQMAAVYLLAEDKTKYVHYESVGMTEEVTKHDFLASGLHGEF
                     GGVLSSRKIEHIRNIPIDTKFIFQTVSGQIIPREIITIPIISGREIIAIISLASVRKY
                     SDQTNKFLDRVFDVLTARVEGILTYRKMRKFAKQLEVQNDELDIQRREMEQQSIELTE
                     QNRELEMQKNQLNEANRLKTNFLSNMSHELRTPLNSVIALSGVLNRRLENSIPEDEYS
                     YIEVIERNGKHLLSLINDILDISRIEAGREDIEITKFNPNNLVGDIVSMIKQQAVQKN
                     IELIQVNASADLSMYNDVDKCRHILQNLVSNAVKFTEVGKVEITVKPQKNTIRFIVSD
                     TGIGISEENINHIFDEFRQADGSTSRRFGGTGLGLAIAKKYANLLGGNISVESVVDKG
                     SVFTLTLPVKYVGENNTEEIASISEKSLKFSKPNYERPKKQNLNKTILIVEDSEPAII
                     QMKDFMEEGGYKVLTARNGA"
BASE COUNT          713 a          352 c          480 g          602 t
ORIGIN      
        1 gtaagagctg ctattggacg tttgcaatca gacatcctta aaatgcgttt agagacccgg
       61 aaccttctgt tggccatcaa taaagaagaa caacaagaag ccattatgct cacggagatt
      121 gcagagatag atgctgtaaa gcaatttgga gttttaaaag caaattattt aggatcgcag
      181 gcagatgtag attctgcata caatgatttt ataagctgga aagttgcccg gcaagaaaat
      241 acaagacttg cagtgctggg cgaagtagaa aaggttaaag aaagtataca ggcagatggc
      301 agggtagggt cctttcggga aggaatgata gaacacctta atacgattga ccattttgct
      361 caaaataaag ctgtaagtct ttttgccgag tcaaaaaaga taaaagaaga tttaaccaga
      421 aatttaattc tatgtgttct tgctatcata atcttgtcat tggtcattgt ttatctttta
      481 gttttaagcg tccggactcc aataaaagag cttattagtg ttaccgaccg gtttaaagaa
      541 ggtaatttga atgcacgtag cagtttgaca ttgaaaaatg aatttggaaa cctggctgaa
      601 tcgtttaatg aaatggtgga aaaaattcaa acagatgtag agctaaccct taaaacagag
      661 cgtataaatt catcgatgct tacggtagat aattcgcatt tatttttcag ggaatttttg
      721 ccggtattca gggaactgac caattcacaa atggctgcag tctatttatt ggctgaagat
      781 aaaaccaaat acgttcatta cgaatctgtt ggtatgacag aggaagttac aaagcatgat
      841 tttttggctt ccggacttca tggagagttt gggggtgtat tgtcgtcgcg taaaattgag
      901 catatcagaa atatccctat tgataccaag tttatatttc aaacagtgag cggccagata
      961 attccccgtg aaattataac aataccaatc atatccggcc gtgaaattat cgctattatc
     1021 tcgctggcta gtgtccgcaa gtattcggac cagactaaca agtttcttga ccgggtattc
     1081 gatgtgctta ctgcccgtgt tgaaggcatt ttgacatatc ggaaaatgcg taagtttgcc
     1141 aagcaactgg aagttcaaaa tgacgaactg gatattcaac gtcgggagat ggaacagcag
     1201 tccatcgaat tgaccgaaca aaaccgggag ttggaaatgc agaaaaacca acttaatgag
     1261 gccaatcgcc taaaaaccaa ctttttgtcg aatatgagcc atgaacttcg tacaccgctc
     1321 aattcggtaa ttgcactttc cggggtgctt aaccgccggt tggaaaacag tattccggaa
     1381 gatgaataca gttacattga agtgattgaa aggaatggaa aacacttgct ctcgctgata
     1441 aatgatattt tggatatttc gcgaattgaa gcaggtcggg aagatattga aataacgaaa
     1501 ttcaatccga ataatcttgt aggagatatt gtaagtatga taaaacagca ggccgttcag
     1561 aaaaatattg aactcataca agtaaatgca agtgctgatt tgtctatgta taatgatgtt
     1621 gataaatgcc gtcatattct acaaaatttg gtgtcaaatg ccgttaagtt taccgaagtc
     1681 ggcaaggtgg aaataactgt aaaacctcaa aagaatacaa ttaggtttat tgtttccgac
     1741 accggtatag gcatttcaga agagaatata aatcatattt ttgatgaatt tcgtcaggca
     1801 gatggcagca catcccgtcg ttttggcgga accgggttgg ggctggccat tgccaaaaaa
     1861 tatgctaatc tgttgggagg caatatctct gttgagagtg ttgttgataa agggtctgta
     1921 tttacgttga ccttgcccgt aaaatatgtt ggtgaaaata atactgaaga aattgcaagt
     1981 atttcagaaa agagtttgaa attcagcaaa cccaactacg aaagacctaa gaaacagaat
     2041 ttgaataaaa ccattcttat agttgaagac agtgaaccgg ccattattca aatgaaggat
     2101 tttatggaag agggtggata taaagtgttg acggccagaa atggtgc
//
LOCUS       DATDNM010000081         2453 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1077548, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000081 DATDNM010000000
VERSION     DATDNM010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1077548"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..860
                     /locus_tag="VI413_01415"
     CDS             <1..860
                     /locus_tag="VI413_01415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEY6913303.1"
                     /translation="AYLYTKKQVDFGARVPNTKAHDDCALYLSAQLKKFGAEVIEQKA
                     NLTAFDGTVLKSVNIIGSFNPKAETRILLFSHWDSRPWADNDPDPKNHKKPVMAANDG
                     ASGVGVLLEMARMMGKNLPAVGVDIIFFDSEDYGKPASAGGDPAEDSWCLGTQYWAKN
                     PHVPGYTARYGILLDMVGAPGATFCREQSSEYFAGSVVNNVWSQAKSLGFGQYFKDQK
                     GGAITDDHIYVNKIIGIPSIDIIHYDPNSESGFGEYWHTTHDTMDKVDKNTLNAVGTT
                     LMHVVYSEK"
     gene            886..1968
                     /gene="proB"
                     /locus_tag="VI413_01420"
     CDS             886..1968
                     /gene="proB"
                     /locus_tag="VI413_01420"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016275410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEY6913304.1"
                     /translation="MSLRFKKIAVKIGSNVLTRADGTLDITRMSALVDQISLLHKKGV
                     EVVMISSGAVASGRSVLGITKKMDVVDQRQLFSAVGQAKLINHYYDLFREHGITVGQV
                     LTTKENFSSRRHYLNQRNCMQVMLENKVIPIVNENDTVSVSELMFTDNDELSGLIASM
                     MDMQALIILSNIDGIFNGNPSDPASKVIQRIEKGQDVSDFIQTTKSTFGRGGMLTKTT
                     IARKIADQGIDVIIANGKKDSILLELLDKKADVVCTQFVASSGDVSSVKKWIAHSKGF
                     AKGEIHVNENAAKALTGESAVSLLPIGATEIVGDFEKDDIVKIIDQNGHSLGIGKVQY
                     DSEKAREILGKKNQKPLVHCDYLYLE"
     gene            1980..>2453
                     /locus_tag="VI413_01425"
     CDS             1980..>2453
                     /locus_tag="VI413_01425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913305.1"
                     /translation="MNRLSKMLKMLLITATLFLTACISTGDFSNIVKSKLGVYVQMTE
                     SKQADNVIIKTDKLHFIDSAVVVRKQKSYFIPAIIYWQKVNTLSCDINNRYFVNMFTD
                     VFKEAVSEFQLKKHLGSRRLEISLETVPSNFVYSDRFYGVFTMICFSLYREDIRPV"
BASE COUNT          767 a          378 c          590 g          718 t
ORIGIN      
        1 cggcttacct ctatactaaa aaacaagttg attttggagc acgcgttccg aacacaaaag
       61 cgcacgatga ttgtgcgttg tatctttcgg ctcagttgaa aaaattcggt gctgaggtga
      121 ttgaacagaa agccaatctg actgcatttg atggaactgt attgaaatcg gtaaatatta
      181 ttggttcatt taatcctaaa gcagaaacgc ggattctgct tttttcgcac tgggattctc
      241 gtccgtgggc agataatgat ccggatccca aaaatcataa aaagcctgtt atggctgcca
      301 atgacggagc aagtggagta ggagtattac tcgaaatggc tagaatgatg gggaaaaacc
      361 tgccggcagt tggtgtcgat ataatattct tcgattcgga agattacgga aagccagcca
      421 gtgcaggtgg tgatcctgcc gaagattcct ggtgtcttgg aactcaatat tgggcgaaaa
      481 atccgcatgt gccaggttat acagctcgat atggaatttt acttgatatg gttggagcac
      541 ccggtgctac tttttgccgg gagcagtcgt cggaatattt tgcaggaagt gtggtaaata
      601 atgtttggtc gcaagcaaaa agcctgggtt ttgggcagta ttttaaagat caaaaagggg
      661 gagcaattac cgatgatcat atttatgtga ataaaataat tggtattcca agtattgata
      721 ttatacacta cgatccgaat tccgaaagtg gattcgggga atattggcat acaacgcacg
      781 atacgatgga taaggtagat aaaaatacgc ttaatgccgt aggaacaaca cttatgcatg
      841 ttgtttatag tgaaaaataa atgatagtta atagtaagaa ggaatatgtc attgcgattt
      901 aaaaagatag cggtaaaaat aggaagtaat gtgttgacac gtgctgatgg aacgcttgat
      961 atcacccgta tgtcggcatt agtagatcag atttctctat tgcacaaaaa aggagttgaa
     1021 gtagttatga tttcttccgg agcagttgca tcgggacgaa gcgtgttggg aattacaaag
     1081 aaaatggatg tggtggatca aaggcagctt ttttcggccg tggggcaggc aaaactcatt
     1141 aatcactact acgatttatt tcgcgaacat ggaattactg taggtcaggt gctgacaacg
     1201 aaagaaaact ttagcagtcg tcgccattat ctgaatcagc ggaattgtat gcaggtaatg
     1261 ctggaaaata aagttattcc gattgtaaat gagaatgata cagtttctgt ttctgagttg
     1321 atgtttaccg ataatgacga actttcgggt cttattgcct cgatgatgga tatgcaggca
     1381 ttgataatac tcagtaatat tgatggaatt ttcaatggaa atccctcaga cccggcttcg
     1441 aaagtgattc aacgtattga aaaaggccag gatgtttcag actttataca aactaccaag
     1501 tctacttttg gtcggggtgg aatgctgact aaaacgacta ttgcacgtaa gattgccgat
     1561 caggggattg atgtaatcat tgccaacgga aagaaagata gtattttgct ggaattgctg
     1621 gataaaaaag ccgatgtggt ttgcacgcag tttgtggctt caagtggcga tgtttcaagt
     1681 gtaaaaaaat ggattgctca tagcaaaggt tttgctaaag gcgaaattca cgtgaacgaa
     1741 aatgcggcta aagcgctgac cggtgaaagt gcagtgagtt tactgccgat tggagcaact
     1801 gaaattgttg gtgattttga gaaagatgat attgtaaaga ttatagacca aaacgggcat
     1861 tcgctcggca ttgggaaagt tcaatatgat agcgaaaaag cccgggaaat actcggaaag
     1921 aaaaaccaga aaccactggt tcattgtgat tatttgtacc ttgaataaaa tagtgggcta
     1981 tgaatcgatt atctaaaatg ctcaaaatgt tgcttattac tgcaactttg tttttgacag
     2041 cttgtataag tacaggggat ttttcgaata tagtgaaatc aaaattgggt gtttatgttc
     2101 agatgactga aagtaaacaa gctgacaatg tgattataaa aacggataag cttcatttta
     2161 ttgattcggc ggtagtcgtt cgcaaacaaa aatcatattt tattccggcc attatttact
     2221 ggcaaaaagt gaatacgctg agttgcgata taaataatcg ttattttgtc aatatgttta
     2281 cagatgtttt taaggaggct gtgagtgaat ttcagttgaa aaaacatctt ggctcaaggc
     2341 ggttagaaat aagccttgaa acggtcccgt cgaattttgt ttatagcgat agattttacg
     2401 gagtatttac tatgatttgt ttttcattat atcgtgaaga tattcgcccg gta
//
LOCUS       DATDNM010000082         6412 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_224214, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000082 DATDNM010000000
VERSION     DATDNM010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6412
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224214"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..304
                     /locus_tag="VI413_01430"
     CDS             47..304
                     /locus_tag="VI413_01430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007212861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HEY6913306.1"
                     /translation="MKSGIHPENYRPVAFKDMSNGDTFISRSTVNTKETIDIDGVTYP
                     VVKMEISSSSHPFYTGKSKLVDTAGRVDKFMTRYAKRGEKK"
     gene            complement(356..1018)
                     /locus_tag="VI413_01435"
     CDS             complement(356..1018)
                     /locus_tag="VI413_01435"
                     /inference="COORDINATES: protein motif:HMM:NF023074.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3256 family protein"
                     /protein_id="HEY6913307.1"
                     /translation="MTRLKLNKCAIVCLMILSSVAVFSQNIEKCYINMPERLNPVVPQ
                     KSRLELLEYHKAGQSDSIQNRFGNQVVLQVFDTLNNRIVVKNTESTTFEMKLLKTETG
                     VPVVGLIRTVCSPICQSTVEFYDTVWNVIPLQFVMPKAIQWINKEKLAGNPDLDKVWV
                     ANVLENGFISLQFDAANQYIIATNNSAEFLDDKDRKVILPLLNEQPVIYELKGRTWVQ
                     KP"
     gene            complement(996..5519)
                     /locus_tag="VI413_01440"
     CDS             complement(996..5519)
                     /locus_tag="VI413_01440"
                     /inference="COORDINATES: protein motif:HMM:NF016260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HEY6913308.1"
                     /translation="MGISLWFHKIIGYFCEIKSKSIKKTAKILGFSLAGIVLFFALLY
                     VLLQNSDIQKAIAQTIVKELATKLHTKVSVGKVEYKLFNVLSINDLYVEDLQKDTLLF
                     VREADAHFDFWKFFKNKIIFTTIDIDQLHGNLVVDKNGHSNLDFVIKAFQKPQTTDTT
                     RVEYRIKNFRLHNSTFTYHNFKLYKQSPKGVFNGNNLKFNHINANVSLDLLKKDTLSA
                     EIKELNAIEQSGLQITDLRTQIFGSKTAVYIPGVELSLPNSNIKLEEIKLKYDSLADL
                     KKLVDKVRWNVPIAPSTVTLSDLKAFLPQFKNVKGVASLKGLLSGRISSMRFQKMEIK
                     YGKSFLLKADLDINGLPNLSEAFIYGQINEFDVQPTDVQDFISQLSGKPFLLPKELNQ
                     LGLLKYKGNVTGFLSNLVAYGNLNTKLGSVSTDILLKLENNLKDLSYNGTIKTSDFQL
                     GRLLNNKQFGKVSFNLNTKGSKKEKSSLRGIITAKVPEIQFNNYSYRDIKFEGKYDGT
                     GFDGKADVEDNNVHAHFNGIIDLTKKLPVFDFDLKVANTNLNALHLIDKYPGATLSFN
                     GKTNMVGNSLDNINGFVRFDSIAFTNQGKKLNVDNIQVISRIDKDFTRVNIVSDYING
                     SLSGNFKYSTIGLTISKIVQNYLPALSIATKKKERNPNHIDVDLQIANTKEISDVLVL
                     PYSLDGVSTIKGFIDERTNRIDVFGNVPALKSSSQFVESITLHCENPKQQLQLTSRAL
                     LHEKDGSLLNLFMTASAAKDSVSAQLGWQNSHKITNAGQISAVTKFRKENDKTAARLS
                     LLPSEIIISDSIWNLHPCTVDFNADSTIRVNDFLFDNHKQFVHVNGVASKSQNDGMTV
                     EMNDLNLEFLLSTLLKLRTITIGGNVTGKVTLFSLLKQPIYEANLSVKGVSLNHKFIG
                     DATLFSTWDKVNSQVLANAVFVNDKKETLATAGGVYVPKNDSLDFLFDAHHLSVEFLD
                     RYFESVIQNFKGYASGKIRMFGPSKVLGFEGNAYVDQGQGSVKMLRTTYFFNDSVHLT
                     RKTIQLRNIKLYDQERNQGSLTGLIRHNGLFQQMLYDVNVSGRNILAMNTHAEDNDYF
                     FGKAYANGNVHIFGDEKVANIWVNAVSQPKTKCYINMGGASTASDNSFINFVNKRVNT
                     NTGPVSQKPAPSAFNVKVNLQIDVTPAAEMELIVDPKGGDLITGKGNGNLRVEFDTFS
                     DIKLFGTYTIDNGYYLFTLQNLIRKEFKIDKGSTLAWSGDPFSAQVDIRALYPLSASL
                     KDLDPDLTTQSQNRSSVPVNCVLKLTDDLMKPTINFDIDLPQSDESMKQRVRSIINTE
                     EMMNRQILYLLVFNKFYTPEYMQNASATNSIVPNEAISFGLSTLSAQVNSWISHASRN
                     FTLGFDYKPSAQVQNEYQVQTQLLYQPNNRLIINGNFGYSNENANSSTNNNKFIGDVD
                     VEYLLSQSGKLRMKAYNHTVDRYRLTTAKTTQGVGVLYKEDFATVGEMINYYWRLLTG
                     AGKKKTNDQTETK"
     gene            5664..>6412
                     /gene="tsaD"
                     /locus_tag="VI413_01445"
     CDS             5664..>6412
                     /gene="tsaD"
                     /locus_tag="VI413_01445"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEY6913309.1"
                     /translation="MNSTIILGIESSCDDTSASVIRDGVMLSNVIANQDVHTSFGGVV
                     PELASRAHQLNIIPVVHEALKLAGVDKSELSAIAFTRGPGLLGSLLVGTSFAKGFAQA
                     LNIPLVDVNHLQAHVLAHFISEGKPNERHPEFPFLCLLVSGGNSQIVLVKAYNEMEVI
                     GQTIDDAAGEAFDKCAKVMGLPYPGGPHIDRLAKEGNPKAFAFNKPQIPDYNYSFSGL
                     KTSFLYLLRDKIKENPTFVEENTNDLCASIQA"
BASE COUNT         1932 a         1421 c         1138 g         1921 t
ORIGIN      
        1 gcaagcccaa acaagaagta agaaaaataa attaaaacat acagatatga aaagcggaat
       61 ccatccagaa aattatcgtc cggtagcatt taaagatatg tcgaacggcg acacctttat
      121 ttcacgttca accgtaaaca cgaaagaaac tatcgatatt gatggtgtaa cttatcctgt
      181 ggttaaaatg gaaatttcaa gttcttcaca ccctttctac acaggtaaat ctaaattggt
      241 agatactgca ggacgtgttg acaagtttat gactcgctac gcaaaacgcg gcgaaaagaa
      301 ataatgctga aaagcagata taaaaaagcc ccggcgataa tcgccggggc tttttttatg
      361 gtttctgaac ccaggttcga ccttttaact cataaatgac cggctgttca ttcagcaaag
      421 gtaaaataac cttacggtct ttatcgtcga gaaattcagc actattattt gttgcaatta
      481 tatactggtt agctgcgtca aactgtagcg agataaaacc gttctctaac acattagcca
      541 cccaaacctt atccagatcg ggattaccgg caagcttttc tttatttatc cactgaatgg
      601 ccttaggcat aacaaactga agaggaatca cattccatac tgtatcgtag aattcaacag
      661 tcgactgaca aatcggcgaa caaacagtcc ggataagtcc gacaacaggt actccggtct
      721 cagttttcaa caatttcatt tcaaaagtag tgctttcggt atttttgacc acaattcggt
      781 tgttcaacgt atcaaaaacc tgcaaaacaa cctgattacc aaaccggttc tgaatgctgt
      841 cactttgacc cgctttgtgg tactcaagca actccagcct tgatttttgt ggaacgaccg
      901 gatttagcct ttcaggcata tttatataac acttttctat attctgagaa aacactgcaa
      961 cgcttgataa tatcatcaaa catacaatag cacatttatt tagtttcagt ctggtcattt
     1021 gtcttctttt ttccggctcc ggtcaatagg cgccaataat aattaatcat ttcaccaacc
     1081 gtagcaaaat cttctttata taaaacaccc actccctgag ttgtcttcgc tgtagtcagg
     1141 cggtaacggt ccacagtgtg attataggct ttcatgcgga gctttcccga ttgcgaaagc
     1201 aagtactcca catctacatc gccaataaac ttattgttat tcgtactcga attcgcattc
     1261 tcgttactat atccaaaatt tccattgata atcaaccggt tgttcggctg atacaacaat
     1321 tgggtttgca cctgatactc attttgcacc tgggcagaag gcttgtaatc aaaacctaac
     1381 gtaaaatttc tgcttgcgtg tgaaatccag ctatttacct gcgcactcaa cgttgaaaga
     1441 ccaaacgata ttgcttcatt tggcacaatg ctattggtcg ctgaagcatt ctgcatatac
     1501 tcaggggtat aaaacttatt aaacaccagc agataaagta tctggcggtt catcatttct
     1561 tcggtattga taatgctccg cacgcgctgt ttcatacttt cgtccgattg cggtaaatca
     1621 atatcaaaat ttatggttgg cttcatcagg tcatccgtaa gcttcagcac acaattaacc
     1681 ggaacacttg aacgattctg ggactgagta gtcaaatcag gatccaggtc tttcagcgag
     1741 gccgacaacg ggtacagggc ccgtatgtct acctgggcac taaacggatc accgctccag
     1801 gccagcgtac ttcccttatc tattttaaat tccttacgaa tcaggttctg aagcgtaaat
     1861 aaataatagc cattatcaat agtgtaggta ccaaaaagct ttatatcgga gaaagtatcg
     1921 aattccaccc gaaggtttcc atttcctttt ccggtaatta aatcaccacc tttcggatct
     1981 acaatcagtt ccatttcggc agcaggagta acatcaatct gaaggttcac tttcacattg
     2041 aaggcactcg gagcgggctt ctgagacaca gggcctgtat ttgtatttac gcgcttgttt
     2101 acaaaattga taaaactatt atcagaagct gttgatgcac cacccatgtt aatataacat
     2161 ttcgtctttg gttgcgacac ggcatttacc cagatattag ctactttctc atctccgaaa
     2221 atatgcacat tcccattagc ataggccttt ccaaagaaat agtcattatc ttcggcatgt
     2281 gtgttcatag ccagaatatt ccttccggaa acattcacat cataaagcat ttgctgaaaa
     2341 aggccgttgt gccttatcaa tcccgtcaaa gatccctgat tccgttcctg atcgtatagc
     2401 tttatattcc tgagctggat tgtctttcgg gttaaatgta ccgaatcatt aaagaagtaa
     2461 gttgttctga gcattttaac cgacccctga ccttgatcaa catacgcatt tccttcaaaa
     2521 ccaagaacct tcgatggacc gaacatcctg atttttccac ttgcatatcc tttaaagttc
     2581 tgaataacac tttcgaaata acgatccaga aattcaacac tcaaatgatg agcgtcaaac
     2641 agaaaatcaa gagaatcgtt cttaggcaca tacacaccac ctgcagtagc cagcgtttcc
     2701 tttttatcgt ttacaaatac agcattagcc aaaacctggc tattcacctt atcccatgta
     2761 gaaaacaaag tggcatcacc tataaattta tgattaaggg ataccccctt cactgaaaga
     2821 tttgcttcat aaattggctg cttcagcagg ctaaacaatg tcactttacc ggtcacattt
     2881 cctccaatgg taatagttct caatttcaac agagtggaca aaagaaattc aagattcaaa
     2941 tcattcattt caactgtcat accatcattc tgacttttag acgcaacccc attgacgtgc
     3001 acaaactgct tatgattatc aaaaagaaaa tcatttaccc gaatcgtact atcagcatta
     3061 aaatcaaccg tacaggggtg gagattccag attgaatcgg aaataattat ctccgagggc
     3121 aaaagcgaaa gacgtgcagc tgttttgtca ttctctttcc gaaacttagt gactgcactg
     3181 atttgtccgg cattcgttat tttatgcgaa ttttgccatc ccaattgagc cgaaacacta
     3241 tcctttgcag ccgaagcagt catgaaaaga ttcagcaacg acccgtcttt ttcgtgcaat
     3301 agcgcgcggg aggttaactg caattgttgc ttcggattct cgcaatgcag tgtaatactt
     3361 tctacaaact ggctactcga ttttagtgca ggcacattac cgaacacatc aatcctgttt
     3421 gttctttcat caataaatcc ctttattgtt gaaactccat caagtgaata aggcaaaacc
     3481 aacacatcgg aaatctcttt ggtattggca atctgcaggt caacatcaat atgatttgga
     3541 ttccgctctt tcttcttggt tgctatagac agggcaggca aataattttg aacaattttg
     3601 ctgatagtca atccaatagt actatactta aaattaccgc taagggaacc attaatataa
     3661 tccgacacga tattgacacg ggtaaaatct ttatcaatcc gtgaaattac ctggatatta
     3721 tccacattca gtttctttcc ctggttggta aatgctatgc tgtcaaaacg gacaaaccca
     3781 ttgatattat ccagcgaatt acccaccata ttggttttac cgttgaacga cagagtagca
     3841 cccggatatt tgtcaatcaa atgcagcgcg ttcaaattag tattagccac tttcaggtcg
     3901 aaatcgaaaa cgggcagttt ctttgtaagg tcgattatac cgttgaagtg tgcatgcaca
     3961 ttattgtcct caacatccgc cttgccatca aacccggtcc catcatattt cccttcaaac
     4021 ttaatatcac gataagaata attattaaac tgtatttcag gaactttagc agtaataatc
     4081 cctctcaggc ttgacttttc ctttttagac cctttggtat tcagattaaa agacactttg
     4141 ccaaattgtt tgttattcag caatctgccc agttgaaaat cagacgtctt tattgttccg
     4201 ttgtacgaca gatctttcag gttgttttcg agttttaata aaatatctgt tgaaacgctt
     4261 cctagtttcg tattcaggtt tccatacgcc accagattac tcaaaaatcc ggtcacattt
     4321 cctttatact taagcagccc caattgattc agctctttag gaagcaagaa aggtttgccc
     4381 gagagctggg aaataaaatc ctgcacatcg gttggctgca catcaaactc attgatttgc
     4441 ccgtaaataa aagcttcact caagttcgga agtccgttta tatccaaatc tgcctttagt
     4501 aaaaacgatt tgccatattt aatttccatc ttctggaaac gcatgcttga gattcggcca
     4561 ctcagcaatc ccttcagtga cgctacgcct tttacgtttt taaattgcgg gagaaaagcc
     4621 tttagatccg ataaagttac cgttgaggga gcaattggca cattccagcg aaccttgtca
     4681 accaactttt taaggtcggc taagctgtca tatttaagct ttatttcttc cagcttaata
     4741 ttcgaatttg gcaagctcag ttcaacgccg ggaatatata cagccgtttt agaaccaaaa
     4801 atctgtgtcc tcaaatcagt aatttgcaat ccggactgct caatggcatt taactcctta
     4861 atttctgcac tcaacgtatc ttttttcaac agatctaacg atacatttgc atttatatga
     4921 ttgaatttca aattatttcc attaaaaaca cctttgggcg actgtttata aagtttgaaa
     4981 ttatggtaag taaatgttga attgtgtagt ctgaagtttt taatccggta ttcaaccctt
     5041 gtggtatcag tagtttgagg tttttggaat gcttttatta caaagtcaag attggaatgt
     5101 ccgtttttat caactaccag atttccatgc agttgatcta tatcaatggt tgtaaagata
     5161 attttattct taaagaactt ccagaaatcg aaatgcgcat ctgcttcgcg aacaaacagc
     5221 aaagtatctt tctgcaaatc ttcaacgtat aaatcattta ttgacaacac attaaaaagt
     5281 ttgtactcaa ctttacccac agacaccttc gtgtgaagtt tagttgccag ctcttttaca
     5341 atggtctggg caatagcctt ctgtatatca ctgttttgga gcaacacata cagcaatgcg
     5401 aaaaataaaa ctattcccgc aaggctaaaa cctaatatct tagctgtttt ttttatactt
     5461 ttggacttta tttcgcaaaa gtaaccaata attttgtgaa accataatga aatgcccata
     5521 agtaagctat ttaaagaatt aaaaaatata aaatacaatt gccgtgccag cataattagc
     5581 ttttcaattt tgcgttaatt attttacata aaaagacaat caaacaaaac aatttcctca
     5641 aattcaggca cctttccact acaatgaatt caactattat attaggcatc gaatcatctt
     5701 gcgatgacac ttcggcttcc gtaatccggg acggggtaat gctatcaaat gtgattgcca
     5761 accaggatgt tcacaccagt tttggaggcg tagtgcccga actggcttcg cgtgcccatc
     5821 aactcaatat tatccctgta gttcacgaag cattaaaact tgccggagtg gataaaagcg
     5881 aacttagcgc catcgccttt acacgtggcc ccggcttact tggttcgttg ttggtaggaa
     5941 cttcttttgc caaagggttt gcgcaagcac tgaacatacc gctggtggac gtaaaccact
     6001 tgcaggcaca cgtattggct cattttatca gcgaaggaaa gcccaatgaa cgccaccctg
     6061 aatttccgtt cttatgccta ttggtttcgg gtggcaactc ccagattgtg ctggtaaaag
     6121 cctacaacga aatggaagtt atcgggcaaa ccattgacga tgcagccgga gaagcatttg
     6181 ataagtgcgc aaaagtcatg gggctaccct accccggcgg gccacatatc gaccgcctgg
     6241 ctaaagaggg taatccgaaa gcttttgcat tcaacaaacc tcagataccg gattataatt
     6301 acagtttcag cggattaaaa acctcattcc tgtatttgtt gcgcgacaaa atcaaagaaa
     6361 atccaacctt tgtggaagaa aacacaaacg atttgtgcgc ttcgatccaa gc
//
LOCUS       DATDNM010000083         2152 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1185154, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000083 DATDNM010000000
VERSION     DATDNM010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1185154"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..495
                     /locus_tag="VI413_01450"
     CDS             <1..495
                     /locus_tag="VI413_01450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913310.1"
                     /translation="LDIQIALSTLQQEVPTLEKYLKLPHVHLGIDPEFSMKEGHRPGT
                     KIGTMDATDINYCSDYLAKLVKDNNLPPKILIVHRFTQGMVRNYKNIKIHPEVQIVMN
                     MDGWGEPILKRSTYKLYIYKEPVQFTGFKLFYKNDLKKAPNVMLTPTDLMKLKPQPIY
                     IQYQ"
     gene            complement(594..1346)
                     /locus_tag="VI413_01455"
     CDS             complement(594..1346)
                     /locus_tag="VI413_01455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913311.1"
                     /translation="MILISPVLYSCTLAYIPNAVNTPLLSDKGDLKSAIRCGSSGLDL
                     QFAGAVTNHIGLMLNGNFATMPDLDEESDGFMNVNNVYSDYAPGATGSGEQHFFGEFG
                     VGCFTRVGLIARLEAFAGVGYGSFQVGDFSFDSGLDNHIDANGYRFFVQPTAGLSTAS
                     FDISLTARFVKLNFLRHSPVYPNLSGSFVDPVLTFKAGKGNTRFVAQVGYSVPIQSDI
                     IQFEYRPLLISVGLEVTDSFDNVFRIFRKNGK"
     gene            1674..1865
                     /gene="rpsU"
                     /locus_tag="VI413_01460"
     CDS             1674..1865
                     /gene="rpsU"
                     /locus_tag="VI413_01460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016275258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEY6913312.1"
                     /translation="MIVVPVKEGENIERALKKFKRKFEKTGVVKELRRRQCFDKPSVV
                     GREEKMHAIYVQKMQLGEE"
     gene            1943..>2152
                     /locus_tag="VI413_01465"
     CDS             1943..>2152
                     /locus_tag="VI413_01465"
                     /inference="COORDINATES: protein motif:HMM:NF014898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEY6913313.1"
                     /translation="MNEFLQYLQYEKNYSSHTVLSYHTDLNQFSEFLQTEPDQLNPQN
                     ISAQQIQQWVLSLMSAEISARTLSRK"
BASE COUNT          793 a          435 c          349 g          575 t
ORIGIN      
        1 ttagatatac aaatagcact aagtacattg cagcaggaag ttccaacact cgaaaagtac
       61 cttaaattgc ctcatgttca tctaggtatc gaccccgaat tttcaatgaa agaaggacat
      121 aggcccggta ctaaaatcgg gaccatggat gctacagata taaattattg ttcagattat
      181 ctggctaaac tcgtaaaaga caacaacctt ccacccaaaa ttcttatcgt gcatcgcttc
      241 acacagggaa tggtgagaaa ttacaagaat atcaagatac atcccgaagt tcaaatagta
      301 atgaatatgg atggttgggg cgaaccgata ctgaaacgca gcacttataa attatacatt
      361 tacaaggagc ctgtgcaatt taccggattc aagttatttt ataaaaatga cctgaaaaaa
      421 gcaccgaatg tgatgttgac gcctacggat ctaatgaaac tgaaacctca acctatctac
      481 attcaatatc aatagacatt tgcaaaaaga cagcaatagc tttgaacctt ataataagaa
      541 agccgcgaac aacctgatag ttgctcgcgg cttttcattt gagtattgcg taatcacttt
      601 ccgtttttcc tgaatattcg gaagacatta tcaaaactat ctgtaacctc aagccctaca
      661 gatatcaaca aaggccggta ttcaaactga ataatgtcag actgaatagg tactgaataa
      721 cctacttgag ctacaaaccg ggtgtttcct tttcctgctt taaaagtcaa tacaggatca
      781 acaaatgaac cggacaaatt cgggtaaacg ggagaatgcc taagaaaatt aagcttcaca
      841 aaccttgccg tcaaactaat atcaaaagaa gcagttgaca atccagctgt gggctgaaca
      901 aaaaaacgat aaccgtttgc atcgatatga ttatccaggc cactatcaaa tgaaaaatca
      961 ccaacctgaa aacttccgta tcctacaccc gcaaaggctt ccaaacgagc tattaaacca
     1021 accctggtaa aacaccccac cccaaactct ccaaaaaaat gttgctcccc cgaacctgtt
     1081 gcacccggag cataatctga ataaacatta tttacattca taaatccatc cgactcctca
     1141 tccaaatcgg gcattgtagc aaaattaccg ttcagcatca gcccaatatg atttgtaacc
     1201 gcacctgcaa actgaagatc aaggcctgaa gaaccgcatc ttattgccga ctttaaatca
     1261 cctttatcac tcaacaaagg agtatttact gcgttaggaa tatatgctaa tgtacacgaa
     1321 tataaaacgg gggatattaa gatcaaacaa aagaaattga ttcttttcat cttagttatt
     1381 tattttaggc agcattagta cccagaaaat actgattaat aaaaaaagaa tttgatcaat
     1441 tgaaagcttc aggagtgaat caaatatata acacttcaac aattagcatt gttccaagcg
     1501 cctcattatt atataactgc taatagtttt aaataaaatt atctgcagtt aggatacggt
     1561 atataatcat aagataaaaa aaataaaata ttgcattgcc aattaaaaat cattctctat
     1621 ctttgcagtc ccaaacaaaa aacaaaagta aacctattaa ataattaata attatgatcg
     1681 tagttccagt aaaagaaggc gaaaacattg agagagcatt gaaaaaattc aaacgtaaat
     1741 tcgaaaaaac aggtgttgtc aaagaattac gtcgtcgtca atgtttcgac aaaccttctg
     1801 tagtaggtcg tgaagaaaaa atgcacgcga tttacgttca aaaaatgcaa ttaggcgaag
     1861 aatagtaaat aaaacggacg gaaagcttgt tttcccgatt tatttatgtt attttcgttg
     1921 cagatttgag catacggtta tgatgaacga atttctgcaa tatttacagt atgagaagaa
     1981 ctactcttct catactgttt tgtcgtacca tacagatcta aatcaattta gcgaatttct
     2041 gcaaactgag ccagatcaac tcaaccctca aaacataagc gctcagcaaa tacaacaatg
     2101 ggtcttatca ttaatgtcag ccgaaatatc ggctcgcaca ttgtctcgta aa
//
LOCUS       DATDNM010000084         2189 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1611864, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000084 DATDNM010000000
VERSION     DATDNM010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1611864"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            583..1386
                     /locus_tag="VI413_01470"
     CDS             583..1386
                     /locus_tag="VI413_01470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913314.1"
                     /translation="MEKSIKKKIEIVFVAFIIIALPMGYIMIASIKQEKANKAYEQAM
                     VYDDNKIDFAIQEIDNALKFVFWKSNLTNQKVQLLYKKKEYRKILNCIKNTKAYLYKG
                     LIYEQLQESDSANVFYIKEIPELKKQLGEYSDKEYLSLQIERQLALIYTFLKETDSAR
                     IFLKEIPNDYNLIQKRMIQQYDFYIENYQSGGYKDFLEGETVHFGMDSLPSNLDIDSL
                     FEKNRFYYNGYTTNDNVYEYEIKKIFEKKALSLGMNKIVKTKSNSIYSQ"
     gene            1641..>2189
                     /locus_tag="VI413_01475"
     CDS             1641..>2189
                     /locus_tag="VI413_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HEY6913315.1"
                     /translation="MNFERGIFQRTELLLGREIMEKIASKNVIIFGIGGVGSWCAESL
                     VRSGIRKLTLVDSDRVCITNINRQLHATTLTVGKVKTEALKARLLEINPSAQITTLQK
                     IYEPETADSFNLESYDFIIDAIDSLSNKIDLIRRATRTKATFFSSMGASLKLDPTKIR
                     VAEFWKVKGCPLGSIIRKKIRKG"
BASE COUNT          779 a          368 c          381 g          661 t
ORIGIN      
        1 tgatttggat attataactg atgttcaaat tgaaaactcc aataaagctg aggagattat
       61 cgactatgaa caacgattca ttcaaaagcg taaataaagc atccgaaaga aattaaagga
      121 atttgatatt atccaacagg atctggtgtt attattagga caccctaaat catacatgag
      181 tgaattaatc aatggagtat ctcaattcac attaaaagat ttaatcatta tccatcgggt
      241 tttaggaatt cacctcaata ctttaattcc aaccactctc caatcagaaa cacgggatca
      301 acttgctgaa ttcattaaaa aattaaacaa gccaaaacta agattgagaa tgaccaaatt
      361 gatataaata tcttttgcca aaaattactt cttcaaaaag acttttcacc atttattatt
      421 ttgccaatcc atttgaggat actatcggaa agtatagctt tggaaaaaat acaatgcaat
      481 gctggttaat cctttttgtg aagatatcaa ctcagtcttt tttagtagaa ataactagca
      541 tggatgtggt acataaaaac gttaggtttc attttaaaag gaatggaaaa atcaattaag
      601 aagaaaatag aaatagtatt tgttgcattt attataattg ctcttcctat gggatatata
      661 atgattgctt cgattaaaca ggaaaaagca aataaagcgt atgaacaagc aatggtttat
      721 gatgataaca aaattgattt cgctattcag gaaatcgata atgcattaaa attcgttttt
      781 tggaaaagta atttaactaa tcaaaaagta cagttacttt ataagaaaaa ggaatatcgg
      841 aaaattttaa attgtattaa aaatacaaaa gcctatctgt ataaaggttt gatatatgaa
      901 caattacaag aatctgattc tgcaaatgtt ttctatataa aagaaattcc agaattgaag
      961 aaacagttag gtgaatatag tgataaggaa tatttatctc tgcaaattga aagacaatta
     1021 gcattaatat atacatttct taaagaaaca gatagtgcta gaatattttt aaaggaaatt
     1081 cctaatgatt ataatttaat tcaaaaaaga atgatccaac agtatgactt ctatattgaa
     1141 aattatcaat caggaggata taaagatttt ttggaaggag aaacagttca ctttggtatg
     1201 gatagtttac catcaaattt agatatagac agcctatttg aaaaaaatag attttattat
     1261 aatggatata ctacaaatga taatgtatat gagtatgaga ttaaaaagat ttttgaaaag
     1321 aaagcattat cattaggtat gaataagata gtaaaaacga aatctaatag catctattcc
     1381 caataacaat ttgataccgg tgtgtcccgc agaaaatttg tagcagggga cattgacgaa
     1441 acccgcaaag cggctaccgg tcatagttgc tgacagttat actccaaatt tcttctcttt
     1501 attcaaatct gctgttccct cttattctac ctccctaatt ccccctgttt ttccaatccc
     1561 ctttttttgt actttcgccc cgcaataatc aatgcatccc tgggttaatt atttgcgatt
     1621 caaaacgttt attacttact atgaattttg agagaggaat atttcagcgc acagagctac
     1681 tgctgggccg tgaaataatg gagaagattg catctaaaaa cgtcatcata ttcggcattg
     1741 gcggggtggg aagctggtgt gccgaaagcc ttgtccgcag tggtatccgt aaacttaccc
     1801 tggtggattc cgacagggtg tgcatcacca atatcaaccg tcagttgcat gccactaccc
     1861 ttacggtggg taaagtgaaa actgaagcct tgaaagcacg cctgctggaa atcaaccctt
     1921 cggcccaaat tacaaccttg cagaaaatct atgaacctga gacggctgat tccttcaacc
     1981 ttgaatccta tgattttatc atagatgcca ttgacagcct gagcaataaa attgatttga
     2041 tccgcagggc tacacgcacc aaggccactt ttttctcttc catgggcgct tccctgaaac
     2101 tggaccctac caaaatcagg gtggcagagt tctggaaggt gaagggctgt ccgctgggat
     2161 ccattatccg caagaaaatc cgtaaaggc
//
LOCUS       DATDNM010000085         3162 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1185267, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000085 DATDNM010000000
VERSION     DATDNM010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3162
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1185267"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..565
                     /locus_tag="VI413_01480"
     CDS             <1..565
                     /locus_tag="VI413_01480"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913316.1"
                     /translation="LEVASLPNPTPMSVSNQNLIMGEGAMWRGRGLIGKLGYVRMWSV
                     AKTKQEIRTNANVYVTGSEANLLAAWNNDVMNATILADKKATYPGTIGSDVAWFGLTN
                     AVNSVYNNSVNIESAFYGRTVEVSNKTNGRLQFAIYSATGQKVMSDYVNAGSKLQKEL
                     KNLNGSYILKAVAEDGSTYTKKFIVTK"
     gene            994..2955
                     /locus_tag="VI413_01485"
     CDS             994..2955
                     /locus_tag="VI413_01485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007216614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 97 protein"
                     /protein_id="HEY6913317.1"
                     /translation="MRHLITKQRWSLIVVALLLFCAGNASAAQFELKSPDGKLKVSVD
                     LKDKIFYNISYGQDELLKNCSLQLDLQNESLGLNPKLQSKKVSTINETITPTVPLKNA
                     TIKNNCNVLLLNFKNDYSVEFRAYNDGVTYRFITRKKKESTVLNEDFSIRFPNTYLAH
                     LSLTGSFKTSYEHPYSHINTSEFKENDQMTTLPVLIETDKQYKILVSEADLTDYPGMF
                     LKSTGDNGMKSAFPKYPLTFGDDGDRSVKITKEADYIAKTSGTRTFPWRLFIITTEDK
                     QLIENEMVSKLSKPNVLVNVNWIKPGQVSWDWWNATFSPYGVDFKSGINTATYKYYID
                     FASKFKIPYIILDEGWAKDTRDAFNTNPDLDLQELIKYGKEKNVRLILWLSWLTVENN
                     FDLFKIYSEWGIAGVKVDFMDRSDQWMVNYYERVAKEAAKYKMIVDFHGAFKPSGVTV
                     TYPNVLSIEGVLGLEQGGNCKPQNNIYLPFIRNAVGPMDFTPGAMINQQPESYRAERP
                     NNASVGTRVHQLSMFVIFESGLQMLADNPTLYYRERECTDFITSVPVTWDETKVLYAK
                     VGEAVVVAKRKGDKWFFGGMTNNQSRTIDLNFDFLPQGKEFTLTAFEDGINADVQGLD
                     YKKKTIRVSSNTKLTIKMERNGGWAGSLE"
BASE COUNT         1079 a          583 c          611 g          889 t
ORIGIN      
        1 tctggaagta gcttcattgc ctaacccaac cccaatgtca gtttcaaatc aaaatttaat
       61 aatgggtgaa ggtgctatgt ggagaggtcg tggattaatc ggtaaattag gttacgttcg
      121 catgtggagt gttgccaaaa cgaagcaaga aatccgcacg aatgcaaatg tgtatgttac
      181 cggttcagaa gctaatttgc ttgcagcctg gaataacgat gtgatgaatg caactatttt
      241 ggctgataaa aaagcaactt atccgggtac aataggttcg gatgttgcct ggtttggtct
      301 gacaaatgca gtaaattctg tttataacaa ctccgtaaat atcgaatcgg cattttatgg
      361 ccgtacagtt gaagtttcaa acaaaaccaa tggcaggtta caattcgcaa tttacagtgc
      421 aaccggacaa aaagttatgt ctgattacgt aaacgcagga agtaaacttc agaaagaact
      481 gaagaatctg aatggttctt acattttgaa agctgtggcc gaagatggat ctacatatac
      541 aaaaaagttt attgtaacta aataaaccgg tttcttctaa aaacttaaat gataaaatcc
      601 ccaccatagt tgtggggatt ttttgagaac tctggtcgtt aaatcaattc atccagtgtt
      661 actcttttca aaaacaaaaa cacttgacac aaaaaagaat tatcaattaa acaacagcgg
      721 attgacttgc gatataacaa tgcttatttt tcaaattgtt aaagaataag atattgacaa
      781 tgcaaccgaa aaaatatagt ttagtagctt tttcgaaacc tctggatatt ttttcaagat
      841 tatatcaagt agaccgctaa gcacctgata caacctgata ctaattttca acaacttaca
      901 caatgtgtat caagcaattt tgctgactat caacatttca ctcaaaagag accaaactat
      961 tgtaacaaga acaccttaaa taaaagaatt aaaatgagac acctaattac caaacaacgt
     1021 tggtcgttga tcgttgttgc tcttctcctc ttttgtgctg gaaatgcttc ggctgcacag
     1081 ttcgaactaa aatcgcctga tggcaagtta aaagtcagtg tagatctgaa ggacaaaatc
     1141 ttctacaata tttcttatgg ccaggatgag ctcctgaaaa attgctcgtt acaattagac
     1201 ctgcaaaacg aatctttggg actaaatcca aaattgcaaa gcaaaaaggt ttctactatt
     1261 aatgaaacaa taacccccac cgttccatta aaaaacgcga caataaaaaa taactgcaat
     1321 gtattgttgc tcaatttcaa aaatgattat tcggttgagt ttcgcgccta caacgatgga
     1381 gttacttatc gttttatcac ccgtaaaaaa aaggaatcaa cggtgctgaa tgaagatttc
     1441 agcattagat tcccgaatac atatttagca catttatcac ttaccggctc attcaaaacc
     1501 tcttacgaac atccttattc acatataaat acaagcgaat tcaaagaaaa cgatcagatg
     1561 actactttgc ctgttttaat tgaaacagat aagcaatata aaattcttgt ttcggaagca
     1621 gatttgacag attatcccgg catgtttctt aaaagcactg gtgataatgg tatgaaatca
     1681 gcttttccta aatatccgtt aacctttggc gacgacggcg atcggagcgt aaaaatcact
     1741 aaagaagccg attatatagc taaaacctct ggcacgcgca cttttccatg gcgtttattt
     1801 attattacta cagaagacaa gcaactgatt gaaaatgaaa tggtatcgaa attatcgaaa
     1861 ccaaatgtac tggtaaatgt aaattggatt aagccagggc aagtaagctg ggactggtgg
     1921 aatgcaactt tttcgcccta tggcgttgat tttaaatctg gtattaatac cgccacctat
     1981 aaatactata tcgattttgc ctcaaaattt aaaattccat acatcattct tgacgaagga
     2041 tgggcaaaag acacacgcga tgcctttaat acgaatcctg atttagattt gcaggaatta
     2101 ataaagtatg gaaaagaaaa aaatgttcgg ttaatacttt ggttgtcgtg gttgacagtc
     2161 gaaaacaatt ttgatctgtt caaaatatac agtgaatggg gtattgcggg agttaaagtt
     2221 gattttatgg atcgtagcga ccaatggatg gtgaattatt acgaacgggt agcaaaagaa
     2281 gctgcgaagt ataagatgat tgtcgatttc cacggtgcat ttaagccttc cggagttacg
     2341 gttacttacc cgaatgttct ttcgattgaa ggtgtccttg gattggaaca aggcggaaac
     2401 tgtaaaccgc aaaacaacat ataccttcca ttcatccgca atgccgtggg tcccatggat
     2461 ttcaccccgg gagctatgat taatcagcaa ccggaatcgt atcgcgcaga acgccccaac
     2521 aacgcaagcg tgggaacaag agtacatcaa ttgtcgatgt ttgtaatttt cgaaagcggg
     2581 ttgcaaatgt tggccgacaa ccctacactt tactatcgcg aacgagaatg taccgatttt
     2641 atcaccagtg taccggttac ctgggatgaa accaaagtgc tatacgccaa agttggcgaa
     2701 gcagtggtag ttgccaaacg caaaggtgac aaatggttct ttggaggaat gaccaataac
     2761 caaagccgga ctattgacct gaactttgat tttcttcctc agggaaagga atttacgctg
     2821 actgctttcg aagatggaat taatgctgac gttcagggac tggattataa aaagaaaaca
     2881 atccgtgtaa gcagcaatac aaaactgacc atcaaaatgg aacgcaacgg aggttgggcc
     2941 ggatcattgg aatagtattt aaaacaacat cagtatttta agtaatcgac catttaaaaa
     3001 aatcttttcg gttttacaaa tgactattga aatatagtcg atcaacatat aaaaaacaat
     3061 taaatctcat gtaccaattt gacaaacgta tcgtaatgac tttagatgcc ggcggaacca
     3121 atttcgtatt ctcggccgta caatccaatg tagaagtagt aa
//
LOCUS       DATDNM010000086         2497 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_224422, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000086 DATDNM010000000
VERSION     DATDNM010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224422"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..152)
                     /locus_tag="VI413_01490"
     CDS             complement(<1..152)
                     /locus_tag="VI413_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEY6913318.1"
                     /translation="MAKQLTIRPQRGRVKEQPNRINEKIKGLKEVRLVGDNVEQGVYS
                     YEEAIR"
     gene            complement(300..1451)
                     /locus_tag="VI413_01495"
     CDS             complement(300..1451)
                     /locus_tag="VI413_01495"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEY6913319.1"
                     /translation="MNQTIERMTSFIVMDVLERANELQRQGVDIIHLEVGEPDFDMPD
                     CIAKAAIEANQNGITHYTHSLGDPQLREAISEFYKSEYNVTVDPDCIVVTSGSSPAIL
                     MALLLLCKAGDEVIMSNPGYPCYRNFALACHAEPITVSLHAECDFQYDINEIKQKITD
                     KTSAIFVNSPMNPTGTLVADNVYKELAELNIPIISDEIYHGLIYDGKAHSILEFSDKA
                     FVVSGFSKRFAMTGLRLGYLIAPKEYMRSLQILQQNLFICAPSTAQKAGIAALKEAQT
                     DVDSMRSIYNERRLYIIERLKNMGFIIHTEPKGAFYVFCDARKFTSDSYRFAFDVLEK
                     AHVGITPGVDFGTNGEGFVRFSYANSLENIQIAMDKLEAYLQNMTQQAD"
     gene            1696..2271
                     /locus_tag="VI413_01500"
     CDS             1696..2271
                     /locus_tag="VI413_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007833198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEY6913320.1"
                     /translation="MKSFDLKGTVRTGLGKKATKAERVAENVPCVLYGTAENVHFTTT
                     VSEIRKLVYTPEVFVVNLEIEGKVTKAIMKALQFHPVTDKVLHMDFLAISEDKPVVVN
                     LPVKLEGLAEGVKAGGKLALEMRNLKVKGLYTQIPENIVIDVTELGLGKTIQVAKVSV
                     PNLEILNAKNAVVAQVKLTRAARGAAANAGK"
     gene            2283..>2497
                     /locus_tag="VI413_01505"
     CDS             2283..>2497
                     /locus_tag="VI413_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005841628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEY6913321.1"
                     /translation="MKYLIVGLGNIGNEYQDTRHNIGFTILDAFAKASNVFFTENRYG
                     ATCEVKLKGRTLILLKPSTYMNLSGNAL"
BASE COUNT          767 a          464 c          498 g          768 t
ORIGIN      
        1 atacgtatag cttcttcgta cgaataaacg ccttgctcta cgttgtcacc taccaaacga
       61 acttctttta accctttaat tttttcgttg atacgattgg gttgctcttt taccctacct
      121 ctttgaggtc tgatggttaa ttgtttagct attgcttgtt tcctccctaa ctttagaaaa
      181 tgaataaaat attgttttgc attttgagcc cgcaaatata atactttttt ttgaattata
      241 agttgtattg ctaaaaataa tcaaaacaat ttgtaaacct cttatcttat aatctgcaat
      301 caatctgcct gttgggtcat attttgcaaa tatgcttcca atttgtccat tgcaatttgg
      361 atattttcaa gcgaattggc atatgagaat cgtacaaatc cttcgccatt ggttccaaaa
      421 tcaacaccgg gagtaatgcc aacatgcgct ttttccaaaa cgtcgaacgc aaaacggtaa
      481 gaatcggaag tgaattttcg agcgtcacag aaaacgtaga atgcaccttt gggttctgta
      541 tgaattataa atcccatgtt ttttaatcgc tcaattatgt acaaccgtct ttcattataa
      601 atagaacgca ttgaatctac atcggtctgc gcttctttga gtgctgcaat tccggctttc
      661 tgggctgtac tcggagcaca aataaataaa ttttgttgca atatctgcaa cgagcgcatg
      721 tattcttttg gcgcaatcag gtatccgagc cggagtccgg tcatggcaaa ccgcttggaa
      781 aaaccgctta caacaaatgc tttgtcagag aattcaagaa ttgaatgcgc ttttccgtca
      841 taaataagac catgatatat ttcgtcagat ataattggaa tatttagttc ggccagttct
      901 ttataaacat tatctgctac gagtgttccc gttggattca tgggcgaatt tacaaaaatg
      961 gcacttgttt tatcagtgat cttctgcttg atttcgttta tatcatattg aaagtcacat
     1021 tcggcatgca acgatacagt aatcggttcg gcatggcaag ctaacgcgaa atttctgtaa
     1081 caaggataac ccgggttaga catgattact tcgtctccgg ctttgcaaag caataacaat
     1141 gccatgagaa tggcgggcga ggagccggaa gtgactacaa tgcaatcggg atcaactgta
     1201 acgttatatt ccgatttgta aaattcgctg attgcctcac gcagttgtgg gtcgcctaac
     1261 gaatgtgtgt aatgcgttat accgttttgg ttcgcttcaa tagctgcttt ggcaatgcaa
     1321 tcgggcatgt caaagtcggg ttcaccaact tcgagatgga tgatatcgac accctggcgt
     1381 tgcaattcat tggctcgttc gagtacatcc attacaataa aggatgtcat gcgttctatc
     1441 gtttgattca tcttttttga cttgttgaaa caggttgcaa aagtacttaa aatgaccaag
     1501 gtggttgcat gtttctaaag aaaaatagta tcgaaaaaac agttgtattt tctcttaatg
     1561 gagatattgc acatttccga aaatataact acctttgtcc cacttttttg aaaaagaaag
     1621 tgtgatggga aattaagcga caaatcactt aaaaataacc gcttaaattt tgagtaacac
     1681 aataaaaata acaaaatgaa atcatttgat ttaaaaggaa cagtgagaac tggccttggc
     1741 aaaaaagcca ctaaagcaga aagagtagct gaaaacgtac cttgtgtatt gtatggaaca
     1801 gctgaaaatg tacacttcac aactacggta agtgaaattc gcaaattggt ttatactccg
     1861 gaagtatttg tagttaacct ggaaattgaa ggaaaagtaa caaaagctat catgaaagcg
     1921 ttgcaattcc accctgtaac tgacaaagta ttacacatgg actttcttgc tatcagcgaa
     1981 gataaacctg tagttgtaaa tcttcctgta aaacttgaag gtttggcaga aggtgtgaaa
     2041 gccgggggta aattggctct cgaaatgcgt aatttgaaag taaaaggttt atatactcaa
     2101 attcctgaaa acatcgttat tgatgttact gaattaggat tgggaaaaac tatccaggtt
     2161 gcaaaagttt cagttccaaa tttggaaatc ctgaatgcta aaaacgctgt agttgcacag
     2221 gttaaattga caagagctgc ccgtggtgct gctgcaaatg ctggcaaata atttttgaac
     2281 agatgaaata cttaattgtc ggattgggca atattggtaa cgagtaccag gatacccgcc
     2341 acaacatagg ttttacaata ttggacgctt ttgctaaggc gtccaatgtt ttttttaccg
     2401 aaaaccgtta tggtgcaact tgcgaggtga agttgaaagg tcgcacatta atactgctca
     2461 agccttccac ctacatgaac ctgagtggga acgccct
//
LOCUS       DATDNM010000087         2873 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1719461, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000087 DATDNM010000000
VERSION     DATDNM010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2873
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1719461"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1683
                     /locus_tag="VI413_01510"
     CDS             <1..1683
                     /locus_tag="VI413_01510"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6913322.1"
                     /translation="DYSNTEKREFNKTWGTADRINSTNGLNVSNESSINWTINSTLNY
                     SVKWSEDSNLSALVGTEAVKQAGYGLYASDSQFTNSSPDFLFIGKGVGTKSESQGEWG
                     SSLLSFFGNVNYNYSQKYYVSGIIRRDGSSRFSSGHKWGTFYSVSGGWNLDSEDFLKD
                     RPNISKLKLRTGYGSIGNQNIPLYAYSDRYGSQHYYTFGGASYNGYAQTTLGNVDLKW
                     ETNNQFNLGVDLEMFKGTIGASLDYYYKITNDMLLPASFPPSVGNASPPYINSKGNVL
                     NTGFDLELFYRKMYKDGGFNITLNGGFLHNEVLKIDAPYFAGTVDTGVSATKTDVGHP
                     IGSFYLYQMAGIFQNTTEILTSAYQGNNIQPGDVKYVDQNKDNVIDAKDRTFVGSAIP
                     SVNMGLNLSGNYKGFDMSVFFQGAFGQKIFSQVNYDIEGYYRGFNLTERYYKEHWTGE
                     GTSNTQPRASWAAKSNNVRASTRFLEDGSYVRLKNIQFGYTIPNTKKLKIQTIRLYLA
                     ATNLLTFTKYTGFDPEMTVSTNSASQGDLANGIDWGTYPVAKNYTFGLNITF"
     gene            1696..>2873
                     /locus_tag="VI413_01515"
     CDS             1696..>2873
                     /locus_tag="VI413_01515"
                     /inference="COORDINATES: protein motif:HMM:NF024181.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913323.1"
                     /translation="MKKRHYILIAIASIGLFSSCNDFLTADLKGDYTSANYYTSPEAA
                     TMAVTGIYNSLYGSTLWMFGDVASDDAVKGGNAGDQADINGINDFTATSDNGIINTYW
                     QATYETVARANNAIAYIAPMSFDATLRDRLVGEAKFLRAYSYFNLVNIYGKVPLKLLP
                     QLSTETVNVGLSDVPAIYAQIEKDLTEAIAVLPVSYPTEAGRVTQGAALALLAKADLY
                     QKKYTECLANIQTLENLNKYDLVKNYADLFKAGAEDSVEVIFGVRYINNTEVSLGNNL
                     SVWFSPAIEGGYYFDAPTQSYVDAFVDKTVGGLDDPRLDASIGREGKPWFNNSTFSST
                     WSEATGYLVKKYDEDTRVGVAKDQSTIPYNGIRYADIVLMKAEALNELGDANAVANAA
                     T"
BASE COUNT          855 a          587 c          650 g          781 t
ORIGIN      
        1 gattacagta atactgaaaa gcgtgagttt aataaaacat ggggaactgc ggaccgtatc
       61 aatagtacca atggtttaaa tgtttcgaat gaaagcagca taaactggac catcaacagc
      121 acgttgaatt acagtgtaaa atggagcgaa gacagtaacc tgtcagcgtt ggttggtacc
      181 gaagcggtga agcaagctgg ctatggtttg tatgccagcg atagccagtt tacaaactca
      241 agtcctgatt tcctttttat cggcaagggt gtaggaacca aatcggaaag ccagggagaa
      301 tggggctcaa gcctgctttc tttcttcgga aatgtgaact acaattacag tcaaaaatat
      361 tatgtatccg gaatcataag gcgtgatggt tcttcccgtt ttagcagtgg ccataaatgg
      421 ggaacattct attctgtttc cggtggttgg aatctggact cggaagattt tctgaaagac
      481 agacctaata tcagcaaact gaaactccgt accggttacg gttctatcgg gaatcagaac
      541 atacctttat atgcttattc cgatcggtat ggatcacagc actattacac ttttggagga
      601 gccagttaca atggctatgc ccaaacaaca ttgggtaatg tggatttaaa atgggaaaca
      661 aataatcagt tcaatttagg tgtcgacctt gaaatgttca aaggaacaat tggcgcttcg
      721 ctcgattatt actataaaat taccaatgat atgttgttac cggcttcatt tcctccttct
      781 gttggaaatg cttcgcctcc ttacatcaac agcaaaggaa acgtacttaa tacaggtttc
      841 gaccttgaat tattttaccg aaaaatgtat aaagacggtg gatttaatat cacgttgaac
      901 ggaggatttt tacacaacga agtgctgaaa attgatgctc cctattttgc cggaacagtt
      961 gatacaggcg tttctgcaac aaaaacagat gttgggcacc ccattggatc cttttatttg
     1021 taccagatgg ccggaatctt tcaaaatacc acagaaattc ttacttcggc ttaccagggg
     1081 aataatatac agccgggcga tgtgaaatac gttgaccaga ataaagacaa tgtgattgat
     1141 gcaaaggaca ggacttttgt cggaagtgcc attcccagcg tcaatatggg cctgaacctt
     1201 tcgggcaatt acaaaggatt tgatatgtct gtatttttcc agggagcttt cggacaaaag
     1261 atattctcgc aggtgaatta cgatattgaa ggttactacc gcggattcaa tctgaccgaa
     1321 agatattaca aagaacactg gactggcgaa ggaacttcca acacccaacc ccgtgcttca
     1381 tgggctgcaa aatcgaacaa tgtaagagca tcaacccggt ttttggaaga tggttcttat
     1441 gtccggctga aaaatataca attcggttac accataccta atacgaagaa gctgaagata
     1501 caaactatcc gcttgtatct ggcagcaacc aatttattga cgtttacaaa gtatacaggt
     1561 tttgatccag aaatgacggt tagcaccaat tcggccagcc agggcgacct tgccaacgga
     1621 attgactggg gaacttaccc ggtagctaag aattacacct ttggactgaa cataaccttt
     1681 taatattaca caatcatgaa aaaaagacac tatatactaa ttgccattgc gtccattggt
     1741 ttgttcagct cctgcaatga ctttttaacg gcagatctga aaggggatta tacctctgcg
     1801 aactattata cttcgcctga agctgctacc atggcagtaa ccggaatcta caattcgctc
     1861 tacggtagca cgctgtggat gtttggcgac gtggcttcgg acgatgctgt gaaaggcgga
     1921 aatgccggcg accaggccga tatcaatgga atcaacgatt tcacagctac ttccgataac
     1981 ggtattatta atacctattg gcaggcaact tacgaaactg tggccagggc aaataatgct
     2041 attgcttaca ttgctccgat gagttttgat gccactttgc gcgaccgcct ggtgggcgaa
     2101 gctaaattcc tgcgggctta ttcttatttc aacctggtga atatctatgg aaaggttcca
     2161 ttgaaattgt tgccacagct ttctaccgaa actgttaatg taggattgag cgacgtacct
     2221 gctatttatg cccagataga aaaagacctt acggaggcaa ttgctgttct tccggtttct
     2281 tatccaaccg aagcagggcg tgttactcag ggtgcagcat tggctttact ggctaaagct
     2341 gatctttacc aaaagaaata caccgaatgc ctggcaaaca tccaaacctt ggagaatttg
     2401 aataaatacg acctcgtgaa aaattatgcc gacttgttta aagccggtgc cgaagacagt
     2461 gtggaagtga tttttggagt gcggtatata aataataccg aagtgtcttt gggaaataat
     2521 ttgagtgtgt ggttttcacc ggccattgaa ggtggttatt atttcgatgc gcccacccaa
     2581 agttacgtag atgcatttgt agataaaacc gttggcggac tggatgatcc ccgtttggat
     2641 gcatccattg gtcgcgaagg aaaaccctgg tttaataatt caactttctc ttcaacatgg
     2701 tcggaagcta ccggctatct ggtgaaaaaa tatgatgaag acacgcgggt aggagtagca
     2761 aaagaccaat ccaccattcc ttataatggc atccgttatg ccgatattgt actcatgaag
     2821 gcagaagcac taaacgaact cggggatgct aatgcagtgg ccaatgcagc cac
//
LOCUS       DATDNM010000088         5260 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2039882, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000088 DATDNM010000000
VERSION     DATDNM010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5260
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2039882"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..444
                     /locus_tag="VI413_01520"
     CDS             <1..444
                     /locus_tag="VI413_01520"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913324.1"
                     /translation="NESKSPSVKAKIGNGSWINVSVQPFTDTWQTQSVVISPDAAQNL
                     SLQIGRGSSTFDFEVDNVMIIGTKKTSAVKDVSAEALKLYPNPVKDILYAPKGVERIE
                     ILSLQGSTLISAVGNKVSLSELSKGIYIVRSFINGSSYVNKVVKD"
     gene            458..1684
                     /locus_tag="VI413_01525"
     CDS             458..1684
                     /locus_tag="VI413_01525"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEY6913325.1"
                     /translation="MSKLYILLIFLLTTSIGYSQTKSWLHVDGNVIKDTTGNPVTLRG
                     VSIIAPEYANRNPGNPKTPAEYIAWLADSTRGWYSRILRIPVCELNTTPEKAYNFIDP
                     LVQQAISLGLYVIIDFHNVSDYGSGGTSQFTVLNFWKYFAPRYANSSNVLFEVYNEPV
                     KPADWTQWKNFIQPVVNAIRAVAPKNIILMGSPQWSTYTNSAVSNPIYGDNIVYVFHI
                     YPNQGVPTSYLLDSKFGNAAKSIPVMITEFGWNQNAGYSDAITYGKTSNWGIPFRTYM
                     DAHSNISWVNWVFDNYWMPSIFDQNWDIMGDENQGEFIRKWLADSYKTTTGVENARSN
                     YSRLAIYVIDGKISVSLDEINRVDVYSVTGKLITSLIASDNNISINNTLNNGFYIIRA
                     YNESGLAFTKKMLVIN"
     gene            1748..2542
                     /locus_tag="VI413_01530"
     CDS             1748..2542
                     /locus_tag="VI413_01530"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEY6913326.1"
                     /translation="MKKILYFMVISSLAFTQAGWARKPFSKLVFKEEFSGRGLPNELY
                     WGYEEGYTRNGELQYYTVKRPENCYQKDGFLHIITLNDSARIDGKVCPVTSASIITKG
                     KKAWKYCKVEVRAKLPACLGTWPAIWMMPVDDKYGKWPKSGEIDIMENVGYDPGKVHY
                     AVHSDKYNHTKDNQKRFTVDCPTAFTDFHVYGLEWTKNQINWYLDGKLQYTVKKDESG
                     WSAWPFDQPFYLILNSAFGGGWGGRNGVDVTRLKQEYIIDYVRVYQ"
     gene            2583..4058
                     /locus_tag="VI413_01535"
     CDS             2583..4058
                     /locus_tag="VI413_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009317967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6913327.1"
                     /translation="MIDRRKFLKTTGMLALASTIPFMTTAARDDEKIKSLFSTNGKSL
                     RLKNNKLTIDDQWDVIVIGGGPAGCAAAISAAREGAKTLLIEGMGCLGGMGTSGMVPA
                     WTPFSDGEKIIYRGIAEKVFNESKKGVPHEPKDKLDWVAINPEWLKLVYDRMVAAAGA
                     KVLFFSHLAAVEMKNGKEVDAIVIANKSGLTAYRAKVYVDCTGDGDLAAWAGASFTKG
                     NAKGISMPATHCFEIVNLNVNPSNVGSFNSLYGGNKNSPIWEIVASGKYPLIKDAHLC
                     INYIGPNAVGLNAGHLFEVDSTNPQSMSDAMSHGRELANQFMAGLKEFRPDIFKDAFL
                     INTGQLMGIRESRIIEGDYRLTLKDWVARASFPDEIGRNNYFIDIHNSIEEIDKVLKE
                     KNFENNLGRPEPYKKGESHGIPYRCLTPKGLKNVLVAGRCISTEQIVQGSVRVQSACL
                     VTGEAAGMAAAHAIKNHRNNVHLIDVDFLRKRLIAEGQYLR"
     gene            4688..5059
                     /locus_tag="VI413_01540"
     CDS             4688..5059
                     /locus_tag="VI413_01540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913328.1"
                     /translation="MKYTHEINPEDQTINVVMEGSLETKEVADLCLKIMLKAKELNYK
                     IIFDCRQSRTKITIAEAYYWYTTHYDHIDIELRKIPLAYIVNREDWDFYSFFECTCIN
                     KGIQIKVFQEEADVLNWIESL"
BASE COUNT         1668 a          840 c         1164 g         1588 t
ORIGIN      
        1 aatgaatcta aaagcccaag tgtgaaagca aaaattggca atggtagttg gataaatgta
       61 tctgtacagc ctttcacaga tacgtggcaa acccagtcag ttgttatttc tcctgatgcg
      121 gcacaaaatc tcagtttgca aattggacgg gggagcagca ctttcgattt tgaagttgat
      181 aacgtaatga taatcggtac aaaaaaaacg tcggcagtga aggatgtctc ggctgaagcc
      241 ttgaaattat atccaaaccc ggtgaaagat atattgtatg caccgaaggg tgttgaaaga
      301 attgaaattt tgtcattaca gggtagcacc ttgatttcag cagttggaaa taaagtatct
      361 ctgtcagagc tttcaaaagg gatttatatt gtcagatcgt ttataaatgg cagtagctat
      421 gtaaataaag ttgtaaaaga ttgatgatta ccagaagatg agcaaattat atattttatt
      481 gatcttttta cttacaactt ccattggata tagccaaaca aaatcctggc tgcatgttga
      541 tggcaatgta atcaaagaca ctacaggaaa tcctgtaacc ttgcgtgggg tatctattat
      601 agctcctgaa tatgctaaca gaaatccggg taatccgaaa acaccggctg aatatattgc
      661 ctggttggcc gattcaacaa gaggttggta ttcgcgtatt cttcgaattc cggtatgtga
      721 acttaacact actcctgaga aagcctataa ttttatagac ccattagtac agcaggctat
      781 tagtttaggg ctctatgtaa ttattgattt tcataatgtt tctgactatg gaagtggtgg
      841 aaccagccaa tttacggttc tgaacttttg gaagtatttt gctcccaggt acgcaaattc
      901 atccaatgtg ctattcgaag tctataacga accggttaag ccggccgact ggactcaatg
      961 gaaaaacttt attcaaccgg tggttaatgc gatccgggct gttgctccca aaaatattat
     1021 tttaatggga agccctcagt ggagtacata tactaactct gcggtatcaa atccaatata
     1081 tggagataac atcgtttatg tttttcatat ttaccccaat cagggagttc ctacttctta
     1141 tttgctcgat tcaaagttcg ggaatgcagc taagtcaatt cctgttatga taacagaatt
     1201 tggctggaat caaaatgccg gttattctga tgcaataacc tatggaaaga caagcaattg
     1261 gggaataccg ttccggactt atatggatgc acattctaat attagttggg taaactgggt
     1321 attcgataac tattggatgc caagtatttt tgatcagaat tgggatatta tgggtgatga
     1381 aaaccagggt gagtttatac gtaaatggct tgctgattcg tataaaacta caaccggagt
     1441 agaaaatgct cgtagtaact actcccggtt agccatttat gttattgatg gaaagatctc
     1501 tgtttctttg gacgagatta atcgtgttga tgtctattca gtaacaggga agctaattac
     1561 ttcgctaatt gcttctgata ataacataag tataaataac accctgaata atggctttta
     1621 cattatcagg gcttataatg aaagtgggtt agcctttaca aaaaagatgt tagttatcaa
     1681 ttagatttag tgcaagtttt gtatcttgcg tggataagat ttcatgtaat caattattca
     1741 gaaaagaatg aaaaagattt tatattttat ggttattagt agtctggctt ttactcaggc
     1801 tggttgggcg cgaaaacctt tctcaaaatt ggtattcaaa gaagaatttt caggcagggg
     1861 actacctaat gaattgtatt ggggatacga ggaaggttac acccggaatg gcgagttgca
     1921 atactacacg gttaagcgtc cggagaattg ctatcagaaa gatggttttc tacatattat
     1981 tacattgaac gacagtgccc gtattgatgg aaaagtttgc ccggtaactt cggcaagtat
     2041 tattaccaaa ggcaagaagg cctggaaata ctgtaaagta gaagtccgtg caaaattgcc
     2101 cgcctgtttg ggaacctggc ctgccatttg gatgatgccg gttgatgaca aatacggcaa
     2161 atggcctaag agcggtgaaa tagatataat ggaaaatgtg ggttacgacc cgggtaaggt
     2221 acattatgcc gttcattccg ataaatacaa ccacacaaag gataatcaaa agaggtttac
     2281 agttgattgt ccgacagcat tcaccgactt ccacgtgtac ggccttgaat ggacaaaaaa
     2341 tcaaatcaac tggtacctgg atgggaaatt gcaatatacg gtaaaaaaag acgaatcagg
     2401 ttggtcggca tggccgttcg atcaaccgtt ttacctgatt cttaactctg cctttggtgg
     2461 cggttggggt ggtcgaaatg gtgtagatgt aaccaggctg aaacaagagt atattattga
     2521 ttatgtgaga gtgtatcagt aaattgtcga ttaaaataaa gattaaaatg aagaatgata
     2581 aactgattga cagacgtaaa tttcttaaaa caacagggat gttggccctg gcatcaacca
     2641 tcccatttat gacaacagct gccagggacg atgaaaagat taaatctcta ttctctacaa
     2701 atggcaaatc attgcgttta aaaaacaata aacttacgat tgatgaccaa tgggatgtga
     2761 tagtaattgg aggcggacct gccggttgtg cggcagctat ttcagcggcc agggaaggag
     2821 cgaaaacact tttgattgaa ggtatgggtt gcctgggtgg aatgggaacc tccggaatgg
     2881 tgcctgcatg gacaccattt tcagatggag agaaaattat atatagagga attgctgaaa
     2941 aagtatttaa tgaatcgaag aaaggtgtgc cacatgagcc gaaagataaa ctggattggg
     3001 ttgccattaa tcccgaatgg ttgaaattgg tttatgatcg gatggttgct gccgccggtg
     3061 caaaagttct gttcttttca catcttgctg cagtagaaat gaaaaacggg aaagaagttg
     3121 atgcgatcgt cattgcgaat aaatcgggat taacagctta tcgcgcgaaa gtatatgttg
     3181 actgtacggg cgatggagat cttgctgcat gggcaggagc ttcttttaca aaaggaaatg
     3241 caaaaggtat ttcgatgcct gcaacgcatt gcttcgaaat tgtaaatttg aatgtaaatc
     3301 catcaaatgt cgggtcgttt aattcactgt atggaggcaa taaaaatagt ccgatatggg
     3361 aaatagttgc ttccgggaaa tatccactta ttaaagatgc acatttatgt attaattata
     3421 ttggtcctaa tgcagtgggg ctcaatgccg gtcatttgtt tgaagtcgac agtacaaatc
     3481 ctcagagcat gtccgatgct atgtctcatg gccgggagtt ggcaaaccag tttatggccg
     3541 ggctaaagga attccggccg gatattttta aggatgcatt tttgatcaat acgggtcagt
     3601 taatgggcat ccgtgaatcg agaattattg aaggggatta caggttaacc cttaaggatt
     3661 gggttgcccg tgcttctttt cccgatgaaa tagggcggaa caattatttt atcgatattc
     3721 ataattcaat tgaagagatt gataaagttc tgaaagaaaa gaacttcgaa aataacctgg
     3781 gtcgtccgga accttataaa aaaggcgaat cgcatggaat accatatcgt tgccttacgc
     3841 ctaagggatt gaaaaatgtg ttggttgccg gtcgttgtat ctctacagaa caaatcgttc
     3901 agggtagcgt tcgtgttcag tcagcatgcc tggtgaccgg tgaggcggct ggtatggcag
     3961 ctgctcatgc tattaaaaat catagaaata atgtgcattt aatagatgtt gattttctga
     4021 gaaaaagatt aatagcagaa ggacaatacc tgaggtagtt tatttgtaat atgaattcga
     4081 caactcaatc gggactgatt ttttttagta acgtcaggag ttatcaatag aaaaacagaa
     4141 gaatgaaaac aaagataaaa gggataatga cgaatttaca aatagcgata tttataacaa
     4201 caatgatgtt ggtcgctttt tcaatgatat atgtttattt gtcataagtt tagtgtgttt
     4261 tttgagatta agggtgcttt aacagactgt ataattaagt tcactatcac tatattcgtt
     4321 ttttaaggta ggtaagaatg tttacactca gagtgagtca ggcattcttt ccttgttgaa
     4381 taataagaat ctgctctccg gagtcttgtc atttaataac aaaacagctt tattggattg
     4441 gcttttgaaa cagagaagtc gtcttgactt tttataatgt cgctcctacg gagcttttta
     4501 ttcttaaaaa ctgataattg ctaccataat attgctccta aaggagcttt ttttaagctt
     4561 cggagaagcg ttattatggt agaactgttc atatatattc ttcagagctc cgttacgagc
     4621 gaaattataa tcaatacaaa agtcaagacg gcttcagaat agatcactga taggtcaaag
     4681 aaagtttatg aaatatactc atgaaataaa tccggaagat caaactatca atgtagtaat
     4741 ggaaggtagt ttagaaacaa aagaagtagc tgatttgtgc ctgaaaatta tgttgaaagc
     4801 aaaagagctg aattataaaa taatcttcga ttgcaggcag tcaagaacca aaatcacaat
     4861 tgctgaggca tattattggt acactacaca ttatgatcat attgatattg aattgaggaa
     4921 aattccttta gcttacatag taaatagaga ggattgggat ttctattctt tctttgaatg
     4981 cacatgcata aataaaggta ttcagataaa agtatttcag gaagaagcag atgttttgaa
     5041 ttggattgaa agtttgtgat aactgaaaag ttattctgaa tgcttaacta tgtatgactc
     5101 ctctaagcag aggtttagtt gctgtatggt actttgtaac tattcattga atgtgttgaa
     5161 ttaaattcac tatccctata ttcgtttttt ttaaggtcca caagaatgcc tgcactcagc
     5221 aatgagtcag gcattctttc tttttataaa ctacacgcta
//
LOCUS       DATDNM010000089         4392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_224661, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000089 DATDNM010000000
VERSION     DATDNM010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4392
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224661"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..624
                     /gene="upp"
                     /locus_tag="VI413_01545"
     CDS             <1..624
                     /gene="upp"
                     /locus_tag="VI413_01545"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEY6913329.1"
                     /translation="SVLKHYIKEIRSVKIQKDSMRFRRNMERIGEIMAYEMSKTMRYK
                     GEDVKTPLGTAHTDVIDEKIVISTILRAGLPFHQGFLNYFDAAENAFVSAYRKYKDAL
                     KFDIFIEYIASPAIDGKTLIITDPMLATGSSMELAYGALLTKGKPAHIHVATVIASQQ
                     AIDYVASHFPEAKTTVWAAAIDPDLNEHSYIIPGIGDAGDLAYGEKL"
     gene            complement(718..1860)
                     /locus_tag="VI413_01550"
     CDS             complement(718..1860)
                     /locus_tag="VI413_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005858243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6913330.1"
                     /translation="MKNSNRVFYVVLFVMVISLIVLSIIYAGKNKQSGTQKSLTYSNP
                     LPVSLGDPYVLLASDGKYYMYGTDETGKIEGFGVYCSDNLIDWKYEGQVYRGNTSGSW
                     TLRNFWAPEVYERDGKFYMFFSADWKYNPTNEGENFRIGVAVADKPTGPFKEISDKPL
                     FDPGYPTIDANILQFKNKTYLYYSRCCYKNPVESEVAVWARKVNLFKEIEESWVYGVE
                     IAPDFKSVIGEPVLLLQPPKTMADKQSEWESRSVTGGEVNRRWTEGSFAFVHNDLIYM
                     MYSANYFGGKNYAVGYATSTSPLGPFKKAENNPVLQKNTDNGGIVTGTGHNCVTRSKD
                     YKTMYCVYHGRTTKTGDKRVVFIDKMMIDKNGLLIVDGPSTNQKTL"
     gene            complement(1953..3758)
                     /locus_tag="VI413_01555"
     CDS             complement(1953..3758)
                     /locus_tag="VI413_01555"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913331.1"
                     /translation="MKKTILFSIACFAITTASAQFTEFDATFDMQHGDIVTADIDNDG
                     DLDIIASGETGNPVATKNAIFINNGGTYTLQGTENVITPGHFADIKLGDIDGDGDLDA
                     IFNGNSNAEMGKGIALNGGSGNFTRSTLDVTSATISCGFGDFNNDGLLDYYVIGNGTA
                     NMGTLFFQNVDGTFTKDQSSFTSLNLIDADVTTVDFNNDGYIDMFISAWDDTAKSRYS
                     AILINDGFGKFTAMAQPNLIRKGYGSSVWGDVDGDGWLDLLLNGDGGADGEGSSDIYR
                     LYKNNGGSLEPKATFNDYRQISVGDGSRLVDWDNDGDLDIILTGWSGTKGRQVTMLFE
                     CTNAANFTYVENALSNTDFPGVSECSIETADLNKDGKIDLMITGYNGNQATQVGKFNR
                     NICGYYLNQTAKVNTKPSVVAGLAQVVSVSGNETMVAFTWNAATDAETPQKSLTYNLA
                     LKNTTTGKWFYNPMAVIGGATDGWRKVSAHGNVFANKRWEIYNLPAGNYEWTVQAVDA
                     NFVGGPFATAKTFSITANGISQIIMGLTISSENGKLLVSNKTGDIMDIQIYTVTGSLV
                     KEMNTSADVSLALRKGIYVVKANNGNQTMIQKVVL"
     gene            complement(3807..>4392)
                     /locus_tag="VI413_01560"
     CDS             complement(3807..>4392)
                     /locus_tag="VI413_01560"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6913332.1"
                     /translation="NSIDPYLFQTGKGANRKSYLFWGSFFGIYGIELSADLKSVKGSK
                     FKIAGNAFEASYIKEKKGKFYFFGSVGSCCDGANSQYRVCVAVSTHIKGPYKDKTGVD
                     IINDGVEGTLLISGNKSMGWVGPGHNSKIITDDAGKDYFLYHAIDVSNAHLQGGATRR
                     PLMMEPLIWVNGWPEITNGSPNINSQKNPRIFSK"
BASE COUNT         1283 a          994 c          793 g         1322 t
ORIGIN      
        1 tccgtattaa aacattacat taaagaaatc cgttccgtaa aaattcagaa agattcgatg
       61 cgtttccgcc ggaatatgga gcgaattggc gaaataatgg cgtacgaaat gagcaaaacc
      121 atgcgctaca aaggagaaga cgtaaaaaca ccacttggca cagctcatac cgatgttatt
      181 gacgaaaaaa ttgtgatttc tacgatttta cgtgccggat taccttttca ccagggcttt
      241 cttaactatt tcgatgctgc agaaaatgct tttgtctcgg cttaccgcaa atacaaagat
      301 gcgctgaagt ttgatatctt tattgaatat attgcatcgc ctgctatcga tggaaaaacc
      361 ctgattatta ccgacccgat gctcgccacc ggcagttcca tggaattggc ttacggcgca
      421 ttgctgacta aaggaaaacc ggctcatatc cacgttgcaa cagttattgc aagccaacaa
      481 gctatcgact atgttgcatc gcacttcccc gaagcaaaaa caaccgtttg ggcagccgct
      541 atcgatcctg atttgaacga acattcgtac attatcccgg gaattggcga tgcaggtgat
      601 ttggcatacg gcgagaaatt gtaaaaaaac aaccccttac ccctgaaggg gaataagaaa
      661 aaaaccttca ttctgaattg aatgaaggtt ttttttctat taaaagtatc taaactctta
      721 aagcgttttt tgatttgtag aaggcccatc tacaatgagt aaaccgtttt tatctatcat
      781 cattttatca ataaaaacga ctcttttgtc gccagtcttg gttgtccggc catgataaac
      841 gcaatacatt gttttatagt ctttagatcg tgttacgcag ttatgtcctg tgcctgtgac
      901 tatgcctccg ttatcggtgt ttttttgcaa cacagggtta ttttcggcct ttttgaatgg
      961 tccaagcgga cttgtagaag tggcgtagcc gacagcatag tttttgccgc caaaataatt
     1021 ggccgaatac atcatgtaaa tcaaatcgtt gtgcacaaag gcaaacgaac cctccgtcca
     1081 gcgacgattt acttctccgc cagtcacaga tctgctttcc cattcagact gcttgtcggc
     1141 catcgttttg ggtggttgta ataataaaac aggctcacca atcactgatt taaaatcggg
     1201 agcaatttcg acaccataca cccaactttc ttcaatttcc ttaaacaaat tcacttttct
     1261 ggcccataca gcaacttcac tttcaaccgg attcttgtaa caacaacgtg aataatacag
     1321 gtatgtttta ttcttaaact gcaagatatt agcatcgatg gtaggatagc ccggatcaaa
     1381 caagggcttg tcggaaattt ctttaaacgg cccggttggt ttatcggcca cggctactcc
     1441 aatccggaaa ttttcaccct cattggtagg attatacttc caatcggcac tgaagaacat
     1501 gtaaaatttg ccatcacgtt catacacttc cggtgcccag aaattacgta atgtccacga
     1561 gccggaagta ttcccccggt aaacctgccc ttcgtatttc cagtcgatta aattgtcgga
     1621 gcaataaacc ccaaaccctt caattttacc cgtttcatcc gtgccataca tgtagtattt
     1681 gccatcggaa gccaacaaca catacggatc gccgagcgat acgggaagtg gattggaata
     1741 tgtcagtgac ttttgagtgc ctgattgttt gttttttcca gcgtatatta tcgataatac
     1801 aataagtgaa attaccataa cgaacaacac cacataaaaa acacgattgc tatttttcat
     1861 caaaagaatg ttgattgggc aataagccat tgaaaattta atattgaaaa aacgggagac
     1921 accagtatat ccgtgtctcc cggcatgaaa gattacaaca ctactttttg tatcattgtc
     1981 tggtttccat tattggcttt caccacataa atacctttcc tcaaggcaag tgaaacatcg
     2041 gcagatgtgt tcatttcttt taccaagcta cctgtaaccg tgtaaatctg aatatccatt
     2101 atatcgccgg ttttattgct taccaacagt ttcccatttt cagagctaat ggttagaccc
     2161 atgattatct ggctaatgcc atttgctgta attgaaaatg ttttagcggt tgcaaatggt
     2221 ccgcctacaa agttggcatc gacagcctga acagtccatt cataatttcc ggctggcaaa
     2281 ttataaatct cccaacgttt gtttgcaaat acatttccat gcgccgatac ttttctccaa
     2341 ccatcggtag ctccaccaat cacagccatt ggattataaa accatttgcc tgtagtcgtg
     2401 ttttttaatg ccagattata tgtcagtgat ttttgaggag tttcggcatc agttgcagcg
     2461 ttccatgtaa atgcaaccat tgtttcattt cctgatactg aaactacctg tgccaagccg
     2521 gccacaacag atggtttggt attgactttt gctgtctgat tgagataata tccacaaata
     2581 ttacggttga atttacctac ctgagtagcc tggttgccat tataacccgt aatcataagg
     2641 tcaattttac cgtctttatt caaatcggct gtttcgatac tacattcgga tacacccgga
     2701 aaatcggtat tactcaatgc attttcgaca taagtaaaat tagctgcatt ggtacattca
     2761 aataacatgg ttacctgacg gcctttggtt ccactccagc ctgtaaggat aatatccaaa
     2821 tcaccatcat tgtcccagtc aaccaaacga gagccgtcgc caacacttat ctgacgatag
     2881 tcgttgaaag tagctttagg ctccaacgaa ccaccattgt ttttatacaa acggtaaatg
     2941 tccgaacttc cttcaccatc agcacctccg tcaccattca gtaataagtc caaccaacca
     3001 tcaccatcaa cgtcgcccca aaccgatgaa ccgtaccctt tacgaataag gtttggctgt
     3061 gccatggctg tgaattttcc aaatccatcg ttaatcagga tagctgaata acgtgatttt
     3121 gccgtatcgt cccatgcgct tataaacata tcaatataac catcgttgtt gaaatcaaca
     3181 gtggtaacat ctgcgtcaat taaattaagg cttgtgaacg atgactggtc tttggtgaaa
     3241 gtaccgtcta cgttttggaa aaacagcgtt cccatattgg ctgtgccatt accgattaca
     3301 taataatcaa gcaatccatc attgttgaaa tcgccaaaac cgcatgaaat tgttgccgaa
     3361 gtcacatcca atgttgagcg cgtaaaatta cccgaaccgc cattcagcgc aattccttta
     3421 cccatttctg cattactgtt tccattaaaa atagcatcca aatcgccatc accatcgata
     3481 tcacccaatt tgatatcggc aaaatgtccg ggagtgataa cgttttctgt accttgcaat
     3541 gtgtatgtgc caccattatt aataaaaatg gcattttttg ttgccacagg gttacctgtt
     3601 tcaccgcttg caataatgtc taaatcgcca tcattatcaa tgtcggcagt aacaatatcg
     3661 ccatgctgca tatcgaacgt ggcatcaaac tctgtaaatt gagcacttgc tgttgttata
     3721 gcaaagcaag caattgaaaa gagaatagtt tttttcattt tcattagaat taaaattgtt
     3781 agtaattatt tagatttaaa attgcgttat tttgagaaaa tacgtggatt cttttgagaa
     3841 tttatgtttg gagatccatt cgtaatttca ggccatccgt tcacccatat taaaggctcc
     3901 atcataagcg gcctacgggt agcaccgccc tgtaaatggg cattggaaac gtcaatagca
     3961 tgatataaaa aataatcttt acctgcatca tcggtaataa tttttgaatt gtgacccggg
     4021 ccaacccaac ccattgattt gttcccgctt attagtaaag tgccttcaac cccatcatta
     4081 attatatcta ctccggtttt atctttgtac ggccctttaa tatgggtaga aaccgctacg
     4141 caaacccgat attgactgtt tgctccatcg cagcaactgc caacagatcc gaagaaatag
     4201 aatttccctt ttttctcttt aatgtaagag gcttcgaatg cgtttcctgc aattttgaac
     4261 ttggaacctt tcacgctttt caaatcagcc gatagttcta ttccataaat tccaaaaaag
     4321 cttccccaaa acaggtaaga tttccggtta gcaccctttc cggtttgaaa taagtaaggg
     4381 tcaatactat tt
//
LOCUS       DATDNM010000090         2663 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_758578, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000090 DATDNM010000000
VERSION     DATDNM010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2663
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_758578"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..286)
                     /locus_tag="VI413_01565"
     CDS             complement(<1..286)
                     /locus_tag="VI413_01565"
                     /inference="COORDINATES: protein motif:HMM:TIGR04134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM-associated putative lipoprotein"
                     /protein_id="HEY6913333.1"
                     /translation="MKKLIFKPYDKIIIAILGVVGFLTGCNLINPPLVEYGTPTADYE
                     IKGTVTDSITSTPIAKARVIITRSQAYIANDSTVTHIDTLAIKETDSAGKY"
     gene            complement(255..473)
                     /locus_tag="VI413_01570"
     CDS             complement(255..473)
                     /locus_tag="VI413_01570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913334.1"
                     /translation="MKKLLLKIYDKLIVAILFSAFFLASCEPDEPQPEYGVIVPMYGV
                     PTTTVSVQNISETTPIVNDEKTDFQTVR"
     gene            717..1565
                     /locus_tag="VI413_01575"
     CDS             717..1565
                     /locus_tag="VI413_01575"
                     /inference="COORDINATES: protein motif:HMM:NF023205.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3316 domain-containing protein"
                     /protein_id="HEY6913335.1"
                     /translation="MKKNIVLIFLLLTTVFVSAQNNMEEKYLLTTKVTTFGLSVPNIT
                     DPYLSPLVYSGIGLNYNTDNRRYFKPDNTNYSMQSKFSLSTGMLLNPVFSSEMLYFGA
                     NYGWGANYHFRLKNKLRILAGGLWDMDFGFKNVPRNVNNPVNLDMATNLNLTGLLMYD
                     LNLRRNTLHFQVALQTQVLGYMFVPPGGASYYDMFELGNTANAFHFSSLHNKLGLNQT
                     YSVDVPFKQSIWRFGLHFQSLKYKANDLVFVHNEASLIVGTTFDVISFGGKKRKAPSN
                     FISTND"
     gene            1586..2593
                     /locus_tag="VI413_01580"
     CDS             1586..2593
                     /locus_tag="VI413_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013546056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY6913336.1"
                     /translation="MKRYIYILLSFAALLSSCINEPETQPDTYKGNFESLWKIIDEKY
                     CYLDYKNINWDSIHTVYKMQVDTVTDQYRFFDMMAAMLGELKDGHVNLYSNFDKSRYW
                     KWFTDYPANFSSSLIFSEPYLGDDYRIAGGFRYKKIANDSIGYMYYGDFSNQFSDTNI
                     SLILKSFSDCKGLIIDVRDNGGGYLNLSEQLASYFFTEEKITGYMSYKTGVGHSDFSK
                     PVEVKTPAHKTIQWQRPVIILSNRMSFSATNSFVCRMKQAPKATIVGDKTGGGGGLPL
                     SSELPNGWLVRFSAEPMFDADLNQTEWGIDPDVKVDMNATDEKNGYDTIIEKAIALLK
                     E"
BASE COUNT          795 a          465 c          551 g          852 t
ORIGIN      
        1 catattttcc tgcactgtct gtctctttaa ttgccaatgt gtcaatatga gtgacggttg
       61 aatcattggc tatgtatgcc tgactccggg taatgataac tctcgctttt gcgattggcg
      121 tagacgtaat actatcagta acggtacctt ttatttcgta atcagctgta ggggtaccat
      181 attcaactaa tggtgggttg attaaattac aaccggttag aaagccgaca actccaagga
      241 tggcaataat aattttatcg tacggtttga aaatcagttt tttcatcgtt gacaattggg
      301 gtggtttcag aaatgttttg gacagacaca gtagtggtcg gaacaccata catcggaacg
      361 atgactccat attccggttg cggttcgtcc ggttcacagg aagccaggaa aaaagcagaa
      421 aataatatag caacaatcag tttgtcgtaa attttcaaaa ggagcttttt cataatagtg
      481 attttgaagt gattcattta ttatgatgca attcagccgg gaaacgctgc ttcaactgca
      541 attaaaaata caattttatt aatacaacaa agatagaaat ctaatttgat atttaacgtt
      601 ttattctctg atatttttta gttgtgttta aaatgagacc aattactacc aatcagtcac
      661 aatccgaatc tttttgttat ttttgtgttt gtaaatttat cattgaattt atccggatga
      721 agaaaaatat tgtattgata ttcttgttgt taacgacagt ttttgtttct gcgcaaaata
      781 acatggaaga gaaatatctc ctgacgacaa aagtgaccac atttggtctg tcagtgccga
      841 atattaccga tccatatctt tcgcctttgg tttatagcgg cattggtttg aattataata
      901 cagataaccg ccgatatttt aagcccgata ataccaatta ttccatgcag agtaaatttt
      961 ctctttctac gggaatgctg cttaatccgg ttttttcaag cgagatgctt tattttggcg
     1021 ccaattacgg ttggggtgcc aattaccatt tcaggctaaa aaataaactc cggattttgg
     1081 cgggaggact ttgggatatg gattttggtt ttaaaaatgt tccccgtaat gtgaataatc
     1141 cggtaaatct ggatatggca accaatttga atctgacagg attattaatg tacgatttga
     1201 acctgaggag aaataccttg cactttcagg tagcgctgca aactcaagtt cttggttata
     1261 tgtttgttcc accgggtggt gcgtcatatt acgatatgtt tgagcttgga aatacggcga
     1321 atgcatttca tttcagctct cttcacaata aattgggatt aaatcaaacc tattcagtag
     1381 atgttccttt caaacaatca atatggcgct ttggactgca tttccagagt ttgaaatata
     1441 aagcaaacga cttggttttt gtgcacaatg aggccagttt aatagtagga acgactttcg
     1501 atgtaatttc tttcggaggg aaaaagagaa aagcaccgag taattttatc agcacaaatg
     1561 attaaaaatt ccaataaata gaattatgaa aagatacata tatattcttt tgtcgtttgc
     1621 tgccctgctt tcttcgtgta taaacgagcc tgaaacgcag cccgacactt ataaaggaaa
     1681 ttttgagtcg ctttggaaaa tcattgacga aaaatactgc tatctcgatt ataaaaacat
     1741 aaactgggat tccattcaca cggtttataa aatgcaggtt gatacagtta ccgaccagta
     1801 taggtttttt gatatgatgg ctgctatgct gggtgaactg aaagacgggc atgtgaatct
     1861 ttattccaat ttcgacaaaa gccgttactg gaaatggttt accgattatc cggctaattt
     1921 cagttcgtca cttatattct ccgaaccgta tttgggtgat gattatcgga ttgccggtgg
     1981 attccgttat aagaaaattg ccaacgattc cataggatat atgtattatg gcgatttttc
     2041 caatcagttt tctgatacca atatctcgct cattctgaaa tctttctccg attgcaaggg
     2101 attgattatc gatgtgaggg ataatggcgg cggttatctg aatttgtcgg aacagttggc
     2161 ttcctatttt tttaccgaag aaaaaattac cggatacatg agttataaaa ccggagtggg
     2221 gcactcagat ttttccaaac cggtagaagt gaaaacgccg gcacataaaa ccattcagtg
     2281 gcaacgccct gtaataatac tttccaaccg tatgtcgttt agtgctacca attcctttgt
     2341 atgccgcatg aagcaggcac caaaagcaac aattgttggt gacaaaaccg gaggtggcgg
     2401 tggtttgcca ttgtcgagcg agttgccaaa cggttggctg gttcgttttt cggcagaacc
     2461 catgttcgat gctgatctga atcaaacgga atggggaatt gacccggatg taaaagtaga
     2521 tatgaatgct accgatgaaa aaaacggata tgatacgatt attgaaaaag caatagcatt
     2581 attgaaggag taagaggcaa gaggtaagga ataagcaatt tgtctggctt gttcttttct
     2641 tacctcttac ctcttacctc tta
//
LOCUS       DATDNM010000091         5865 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_759069, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000091 DATDNM010000000
VERSION     DATDNM010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5865
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_759069"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1281)
                     /locus_tag="VI413_01585"
     CDS             complement(<1..1281)
                     /locus_tag="VI413_01585"
                     /inference="COORDINATES: protein motif:HMM:NF025620.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding domain-containing protein"
                     /protein_id="HEY6913337.1"
                     /translation="MRKAGVIFLSVACLFTVLAQDKLFIHKTDKSVLEVLVSAIDSLS
                     FSNDQTQFDIHKTDKTIATYPVSTIDSLNFGSGTDTVTITYSGATATVVNPLKKHGVE
                     VTQSGADVVVNSTLDQSEVTYILSGTTTEGSFKIYSIYRLNLQLKGVNITNTDGPAIN
                     IQSGKKISVNIADGTSNVLTDGVVYATSTEDQKGAFFSEGQLQFTGNGSLSVKSNSRH
                     AICSDDYIQVDAGNITVPGAAKDGVHSKDYFRMNGGSLNVTATGDGVECELGDVIING
                     GTITTLNAAADTKGIACDSLMTISGGTLNLTVSGNQGKGLKSKQAMTLSGGTITINTS
                     GGPALTVLGSGYDPSYCTGIKSSTNVDIAGANITITSTGVAGKGISADGSINMSSGTV
                     KITCSGTGTTYVNSLGAKDSYNASCFTASMNLNVT"
     gene            complement(1278..1766)
                     /locus_tag="VI413_01590"
     CDS             complement(1278..1766)
                     /locus_tag="VI413_01590"
                     /inference="COORDINATES: protein motif:HMM:NF039201.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913338.1"
                     /translation="MKRRLLFTLMLTIFLGLSITKSQSQSNLILRFTDGSEKGSALSS
                     LTKITFSGTNMLLSYTDGTTGTFDESSVSKMIFGVVSAVGPVVGNDSKLVLYPNPATD
                     YISVKNAAEEAMNYTIYGLDGAALISSNLLSASQQIDISALKKGFYVIKVNNQAMKFL
                     KL"
     gene            2055..2696
                     /locus_tag="VI413_01595"
     CDS             2055..2696
                     /locus_tag="VI413_01595"
                     /inference="COORDINATES: protein motif:HMM:NF039701.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6249 domain-containing protein"
                     /protein_id="HEY6913339.1"
                     /translation="MRRIGFLLVAIFLFIGVQATTAGVNVDSLKNELKEEIVKSSKEL
                     HDLQKDSLMLSKLSPNQLLDLKRQEFEVEKQRIENESRSDMPLNGFGIFMIVMLPFLF
                     IVMVLVIQSRVRNRESQRRYDIYMKSIEMGQTVPEHFFDEPKKTNAPSNLKKGILWLV
                     IGLGIVISFLVMKEKDGLIVGIIPGFVGIGYLLVHKLDKPKTDSTVNNDEQHG"
     gene            2680..3225
                     /locus_tag="VI413_01600"
     CDS             2680..3225
                     /locus_tag="VI413_01600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005808274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6913340.1"
                     /translation="MSNTDDIRWVTQVALLGDKSAFDKLTCKYQSSIRRFFLNLTMGD
                     VPLSDDLAQETFIKAYLNISSFRGLSGFSTWLYRIAYNVYYDSVRAHKPYADIDEYQI
                     DSQHQTQNEFSAEKMDIYKALKILRKEEQTAVLLFYMEDKTHKEIARIMNCPLGTAKT
                     YILKGKERLSVYLTQAGYGNK"
     gene            3212..3526
                     /locus_tag="VI413_01605"
     CDS             3212..3526
                     /locus_tag="VI413_01605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008766458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5056 domain-containing protein"
                     /protein_id="HEY6913341.1"
                     /translation="METNDNMLKDFFSENKKEIADFGFSQRVMRKLPEQRDRSWVMWL
                     FAGIGIVLTLLLGLSTGIIQYLFLYLQIIPQLYILIGVLAFSLIGGVGILLAQTRNYR
                     AI"
     gene            3788..>5865
                     /locus_tag="VI413_01610"
     CDS             3788..>5865
                     /locus_tag="VI413_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010536039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HEY6913342.1"
                     /translation="MRKRIFIIYLLSFIGLGFSYAASPTNQLIGKNVLVFYPANYDAK
                     AHQPSFALIKEPKVIGVVPGSWKLKPDFYSKDGKSIAVLPVAAGTSLYGTGEVTGSLL
                     RNGKTVKLWNTDNFKYMADEGKRLYQSHPWALGVNKDGTAFGVIADNTWKQQIDLSDS
                     IRFISEGPVFRVIIIQRNTPQEVVEELGNLVGKMEMPPLWALGYQQCRYSYVPDTRIK
                     EIADTLRMKKLPCDVIWMDIDYMDKFKIFTFDKVKIPDPKGVNDYLHTKGFHSVWMID
                     PGVKVEKDYPVYESGSKGNHWVQTPDGKEFNGSVWPGPCSFPDFTRPETRSWWGGLYK
                     DYMATGIDGVWNDMNEPSVFDGPDGTMPENNLHRGGGNLQPDIHQRYHNVYGMLMVKA
                     SREGILKVNAHKRPFVLSRSGYLGSNRYAATWTGDNCGNEEHMKMSIPMTLNLSLSGQ
                     PFNGPDMGGFALNTPAELFGQWIAFGTFFPFMRGHATNDVNNKEPWAFGPEIENVSRT
                     ALNRRYQLLPYLYTLFHEASATGLPIMNPVFFTNPKDTMLRKEDQAFLLGNDLLIIPK
                     WAEKPALPSGIWRKFTFENEKTDKYQAEVKIKAGAIIPVGKIIQNTTEYSTDSLTLVV
                     SLDKKGKAAGILYEDAGDGFGYQKGEYLISTFSAKQSAAGVTVVISSKEGNYKSGEKK
                     YRVLLITDNGV"
BASE COUNT         1720 a         1242 c         1261 g         1642 t
ORIGIN      
        1 cgtaacgttt agattcatag atgctgtgaa gcaagaagcg ttgtatgaat cttttgcacc
       61 taatgaattt acatacgttg tacccgtgcc ggagcaagtt atttttactg tacctgaact
      121 catgtttata ctgccatctg cagaaattcc ctttccagcc acaccagtgc ttgtaatggt
      181 aatattagcc cctgcaatat caacgtttgt actgcttttt attccggtgc aataggacgg
      241 atcgtaaccg gagcccaaaa ctgtgagcgc aggaccacct gaagtattga tggtaattgt
      301 accgccgctc aaggtcatgg cttgtttcga tttcaacccc ttgccctgat tgccacttac
      361 ggtcaggttc aatgttccgc cagaaatggt catcaggcta tcgcaggcta ttccttttgt
      421 gtcagccgca gcatttaaag tggtgatagt tccaccattg attatcacgt cacccagttc
      481 gcattccaca ccatcgcccg ttgcggtcac attgagcgaa ccaccattca tgcggaaata
      541 atccttggag tgtacaccgt cttttgccgc tccgggaact gtgatgtttc ctgcatcaac
      601 ctgaatataa tcatcgctgc aaatagcgtg tctgctatta ctctttaccg ataagcttcc
      661 attacctgta aactgcagct gcccttcgct gaaaaatgcc cctttctgat cttcagtgct
      721 ggtggcataa acaactccgt cggtcagcac attgctggtt ccatcggcta tattcacgct
      781 tatctttttg cctgactgga tattgatggc aggtccatcg gtgttggtaa tattaacgcc
      841 ttttaattgt aaattaaggc ggtagatgct gtaaatttta aacgagcctt cggtagttgt
      901 tcccgataaa atgtaggtta cctcgctttg gtcgagggta gaatttacta ccacatcagc
      961 gcctgactgg gtaacttcca caccgtgttt ttttagtgga ttaactacag tagccgttgc
     1021 acccgaatag gtaatggtaa ctgtatcagt tccgctccca aagttcaggc tgtcgatggt
     1081 ggacacggga taagttgcaa ttgttttatc cgttttatga atgtcgaatt gtgtctggtc
     1141 gttagaaaaa ctcaagctat cgatagcaga aacaagtact tccaacacag atttgtcagt
     1201 cttatgtata aatagcttgt cctgcgccaa cacggtgaac aaacatgcca cacttagaaa
     1261 tattactcct gcctttctca taatttcaaa aacttcattg cctggttatt cactttaatt
     1321 acataaaatc cctttttcag tgcgcttatg tcaatctgtt gggaggcaga tagtaaattt
     1381 gaggagatca gtgcagcccc atcaagcccg taaatagtgt aattcattgc ttcttcagct
     1441 gcattcttca ctgaaatata atctgtagca ggattggggt ataaaactaa tttggagtca
     1501 ttccccacaa cagggccaac ggctgaaaca acaccgaaaa tcatttttga aacagacgat
     1561 tcgtcgaatg tacctgttgt accatcggtg taactcagga gcatgttcgt tccggaaaaa
     1621 gtgattttag tgagcgagct caaagccgac cctttttcgg atccgtcagt aaaccgcagg
     1681 attaaattac tttgcgattg tgatttcgta atgcttagcc caagaaatat ggttagcatc
     1741 agggtaaaga gtagccttct tttcatttcc aacaggtatt tttatatcaa tatcgtaatg
     1801 atagtttccg aaattttgtg tgaaaatact gttcttttct atttctcaaa aaaaatatcg
     1861 gtaaaacccc tgttttcatc agtagaaagc aaaatacgtt aaagaatact tattttaaaa
     1921 catgcccggt catgcttcta aaaccataaa gggttaaata aatatttttt ttattcaatt
     1981 caaatccaaa tgatatattc gttgcgtcta acaggaaaac aaacactaaa tttacacttt
     2041 aaaattctac aattatgaga cgtattggat ttttattagt agctatattc ctgtttattg
     2101 gggtacaagc caccacagcc ggcgtaaatg tcgacagttt gaaaaatgaa ttgaaagaag
     2161 aaatcgtcaa aagcagcaag gaactgcacg acctgcagaa agattcgttg atgctttcaa
     2221 aattatctcc aaatcaactt cttgacttaa aacggcagga atttgaagtt gagaaacagc
     2281 gcatcgaaaa cgaaagtcgc agcgatatgc cgttgaacgg atttggcatt ttcatgattg
     2341 ttatgcttcc tttcctcttt atcgttatgg ttttggttat ccagtcaaga gtccggaaca
     2401 gagaatcgca acgtcgttac gatatctaca tgaaatcgat tgaaatgggg caaaccgtac
     2461 cggaacattt cttcgacgag ccgaaaaaaa ccaacgctcc atcaaatttg aaaaaaggaa
     2521 tcctgtggtt ggttatcgga ttgggaatag tcatttcgtt tttggtaatg aaagaaaagg
     2581 atggcctgat cgtaggaatc attccgggtt ttgttgggat aggttattta ttggttcaca
     2641 agctggacaa acccaaaacc gattcaacag taaacaacga tgagcaacac ggatgatatc
     2701 cggtgggtta cacaggttgc gttgcttggc gataaaagcg cattcgataa actaacctgt
     2761 aaataccagt cgtccatacg caggttcttt ctgaacctga ctatgggcga tgttccgttg
     2821 agcgacgatc tggcccagga aacctttatc aaagcctatc tgaacatcag ttcattccgc
     2881 gggctttcgg ggttttccac ctggctttac cgcattgctt ataacgttta ctacgactcg
     2941 gttcgggcgc ataaacctta tgccgatata gacgaatacc agattgacag ccagcatcaa
     3001 acgcaaaacg agttttcggc agaaaaaatg gacatttaca aagcgttaaa gattctgcgg
     3061 aaagaggaac aaacggcagt tttattgttt tatatggaag acaaaacgca caaagaaatt
     3121 gcccgcatta tgaattgccc gctcggaaca gcgaaaacat atattctgaa aggaaaagaa
     3181 agattaagtg tatatctaac tcaggccgga tatggaaaca aatgacaaca tgctgaaaga
     3241 ctttttcagc gaaaataaaa aagaaattgc cgatttcggt ttttcgcaac gcgtaatgcg
     3301 aaaactcccc gaacaacgtg accgcagttg ggttatgtgg ctgtttgcag gcattggtat
     3361 agtgcttacg ctgctgcttg gtttgtcaac cggtataatt cagtacctgt ttttatacct
     3421 tcaaataata ccacaactat acattttaat tggtgtgctt gctttctcat tgattggagg
     3481 tgttggcatc ctgctggctc aaaccaggaa ttaccgggcg atttgataga agcagcgttc
     3541 tggttataag aaaaagagtt ggttgataca aaattcgaac agctcttttt tattttcggt
     3601 cattccatca tcaacatgga gaaataaaat attctggttg aaacagcata ctcaatcgtt
     3661 tgcggaaggt tttgacaaac taaacattca aatctgattg tgacatgatt atcctgtcta
     3721 tttttgtgtc gcaactatgc aacaacaact aattaattaa aaatggttgc aaaaaaacat
     3781 tactccagtg agaaaaagaa tttttattat ttatctgctt agctttattg gcttaggatt
     3841 tagttatgca gcaagcccga caaaccaact gatcggcaaa aacgtgttgg ttttttatcc
     3901 ggccaattac gatgccaaag cgcatcaacc atcgtttgca ttgatcaaag aacctaaagt
     3961 aattggtgtt gtccccggaa gttggaagct aaaacccgat ttctattcca aagacggtaa
     4021 atcaattgca gtattacctg tagctgccgg aaccagcctg tacggtaccg gtgaagtaac
     4081 aggctccctg ctccgtaatg gcaaaaccgt aaaactctgg aatacggaca attttaaata
     4141 catggccgac gaaggcaaac ggctctacca gagccacccg tgggcactgg gcgtaaacaa
     4201 ggatggaacc gcttttggcg ttattgccga caatacctgg aagcaacaaa tcgatctgtc
     4261 agacagtatc cgctttattt cagaagggcc agttttccgg gtgattatca ttcaacgcaa
     4321 cactccacag gaagtagtgg aagaactggg caacctggta ggaaaaatgg aaatgccacc
     4381 actttgggcg ctgggttacc agcaatgtcg ttactcctat gttccggata cacgtattaa
     4441 agagattgca gatacgctcc ggatgaaaaa actgccctgt gatgtgatct ggatggatat
     4501 tgattatatg gataaattca aaatttttac tttcgacaaa gtaaaaatac ctgatcctaa
     4561 aggcgtaaac gattacctgc acactaaggg ttttcattcg gtatggatga ttgaccccgg
     4621 tgtcaaagtc gaaaaagact atcctgtata cgaatccggt tcaaaaggaa accattgggt
     4681 acaaactccc gatggcaaag aatttaatgg tagtgtttgg cctggccctt gctctttccc
     4741 tgactttacc cgccccgaga cccgcagttg gtggggtggc ttatacaaag attatatggc
     4801 tacgggtatt gatggcgttt ggaacgacat gaacgagcct tcggtttttg acgggccgga
     4861 tggcactatg cctgaaaata acctgcaccg cggaggaggc aatctgcaac ccgacattca
     4921 ccagcgctac cataatgtgt acgggatgtt gatggtaaaa gcttcgcgcg aaggaatttt
     4981 gaaggtaaat gcccataagc gcccgtttgt actgtcgcgt tcgggctatc tgggcagcaa
     5041 ccgctatgca gctacctgga caggtgataa ctgcggaaat gaagaacaca tgaaaatgtc
     5101 gattccaatg actctgaatc tgagtctttc aggacagccg tttaatggcc ccgacatggg
     5161 cggtttcgcc ctgaatacac cagcagaatt attcggacag tggattgctt ttggcacctt
     5221 cttccccttc atgcgcggcc atgctaccaa tgatgtgaac aataaagagc cctgggcctt
     5281 cggaccggaa attgaaaatg tctcgcgcac tgcgctaaac cgccggtacc aactcttgcc
     5341 ttatctgtac accttgttcc acgaagcttc tgcaacagga cttccaatta tgaatcctgt
     5401 gttttttacc aacccgaaag acactatgct tcgcaaagaa gaccaggcat tcctgctcgg
     5461 aaatgatttg ttgattatac caaaatgggc agaaaaacca gccttgccca gtggtatctg
     5521 gagaaaattt acttttgaga atgaaaaaac agacaaatat caggcggaag taaagataaa
     5581 agccggtgcc attattcctg tgggtaaaat tattcagaac accaccgaat acagcaccga
     5641 ctcattaacc ctggtggttt cactggataa aaaagggaaa gctgccggaa tcctgtacga
     5701 agatgcaggt gatggctttg gataccaaaa aggggaatac ctgatttcga cttttagtgc
     5761 caaacaaagt gccgcaggtg ttactgtggt gataagctct aaagaaggca attacaaatc
     5821 cggggagaaa aaatacaggg ttctgctgat taccgataat ggtgt
//
LOCUS       DATDNM010000092         4200 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1933929, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000092 DATDNM010000000
VERSION     DATDNM010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4200
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1933929"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..3320
                     /locus_tag="VI413_01615"
     CDS             201..3320
                     /locus_tag="VI413_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018074795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6913343.1"
                     /translation="MLCSFGLASAQNSDGKISGKVLSEKDGEPLVGVSILVKGSKVGT
                     VTDLNGAFTLQAKTGETLAVSYIGYLSQTIKVAGTNLTIKLSEDTKSLDEVVVVGYGV
                     QKKKLVTGATVQVKGDELAKMNTTNPLQALQGKTPGVNISSTSGQPGSDMKVTIRGLG
                     TIGKSGPLYIIDGVEGDITTLNASDIQSIDVLKDAASAAIYGSQSANGVILVTTKQGT
                     RGKGQVSFDAYYGVQNVERKVPLLNAKEYKMIMDEQQINSGLSPFNWAQKGEKDFADT
                     DWIGQMIKKDAKTQNYSLNINGGSETSIYSLSLSYNSQEGIVGGSAVSNYERYGARIN
                     TEHKLYKDVLVVGQHLNFNYINTVGINVGNQYFNTLRGAFQTSPLAPVYSDNNLYNSP
                     YNDTSKSLWSKTEGNPYGAMMTNTQNLNSNQKLLGDVYAELQLIKNLKIKSTFGINYY
                     ANNYHSLTPIFRFSDYSYNEDHETVKQSMNSGNTLTWTNTASYDFKVNEDHAFNALIG
                     TEAIKFQGVDMSAENWNLVPQMDDFNHAYLGNTTGKAYIDNTDPQNPKVVEARTVNGG
                     PAVDYSRLSYFGRLGYNYKEKYMLNATFRADGSARFASGHRWGYFPSVSAGWTISNES
                     FMASTTDWLDQLKVRASWGQVGNNNIVGDYRYAALINTSTNVSSNNPAAFYDFGNSGV
                     NTSGAYLKGLPNKDLKWETSEQTNIGVDARLLKNRLSVTGDFYIKTTKDWIVEAPLPV
                     TSGFDSWLINGGNVKNTGVELALNWNDNIGEFKYNIGVNGAYNNNVVGEIPTGDGLIH
                     GLTNMLYANSEEFYRAENGHALGYFWGYQTAGLFQNQADITAWKAAGNGIKQSDVQPG
                     DVKFVDQNHDGVIDNKDKIDLGNGMPKINIGFNLGFQYKNFDFSVNATGAIGNKIVQA
                     YGQTGAQSNYTTEILNRWTGDGTSNRIPRVTVNNINWLFSDLYVHAGDYLRISNISLG
                     YDFAKLIGLKTISQCRIYGSVQNAFTFTKYNGMDPEIGYGVENWVSGVDLGYYPRPRT
                     VLVGVNLKF"
     gene            3341..>4200
                     /locus_tag="VI413_01620"
     CDS             3341..>4200
                     /locus_tag="VI413_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913344.1"
                     /translation="MKRFKLNILIAGALTLGLFSSCSDSFLNSEPKTSLLDENFYKTE
                     ADAEMALVGCYDGFQSTSSGFPIYTVAEVASDECFGGTGANDGPGYQMIDRLDKTKST
                     ADNNVFNDTWRNYYKAIFRCNNLLQKLPTIQTWKSKSDSANNVTKKRIEGETRFLRAI
                     MYFDLVRLFENIPLLTEPSAENFPQADPSDVYKLIASDLKFAAANIPANAYPKAQAAT
                     NDGRVTRYAAEALLARVYLFYTGYYAKDDLGVTKPDVLAGLEDVIASNQFDTIPYKKL
                     WPAASYVPVPA"
BASE COUNT         1393 a          719 c          860 g         1228 t
ORIGIN      
        1 tggtattgat aaaactataa atgaattcaa aacgttgaaa tacataggaa gtaaaacttc
       61 tattcctcta aattaaatct actgaaaaac aatcaattac taactttaaa ttaaaatgaa
      121 ttatgaatga aaatcacgcg attcaatgtg ttcgaagggt agcaaaaaac ctgttgaaca
      181 agtatgcaat ccttgcggtt atgttatgtt cttttggact ggcttctgca caaaattccg
      241 atgggaaaat ctcgggtaag gtcttatccg aaaaagatgg cgaacctctt gtaggagtta
      301 gcattttagt aaaaggctct aaagttggaa ccgttaccga tctaaacgga gcatttacgc
      361 ttcaagcaaa aacaggagaa actcttgctg tttcgtatat agggtacttg tcccagacca
      421 taaaagtagc tggcacaaac ttaacaatca agttaagcga agataccaaa agtttagatg
      481 aagttgttgt tgtagggtac ggtgttcaga aaaagaaatt agtaaccggg gctacagtac
      541 aagtaaaagg cgatgaactt gctaaaatga atactaccaa tcctttgcaa gctttgcaag
      601 gcaaaactcc cggtgtaaat atttcatcga cttccggtca acctggttct gacatgaaag
      661 tgactatccg tggtttggga acaattggaa aatcagggcc attatacatt attgatggtg
      721 ttgaaggaga tattacaaca ttaaatgcat cagatattca atcaattgat gtattaaagg
      781 atgctgcttc agctgctatt tatggttccc agtctgccaa tggcgttatt ttggtaacga
      841 caaaacaagg aactagagga aaaggtcagg tatcatttga cgcctattat ggtgttcaaa
      901 atgttgaacg taaagttcct ttgttgaacg cgaaggaata taaaatgatt atggatgaac
      961 agcagattaa ttcagggctt tcaccgttta actgggcaca aaaaggagag aaagactttg
     1021 ctgataccga ctggattgga caaatgatta aaaaggatgc caaaacccaa aattactccc
     1081 tgaatattaa tgggggctct gaaacttcaa tctattcact gtcattaagt tataattcac
     1141 aggaaggtat cgttggtggt tcggctgttt ctaactacga acgttacggt gcccgtataa
     1201 acactgaaca caaattatat aaagatgtac ttgttgttgg tcagcactta aatttcaatt
     1261 atatcaacac tgtaggcatt aatgtaggaa atcagtactt taatacatta cgtggtgctt
     1321 tccaaacatc tccactagca cctgtatata gcgacaataa tctttataac agcccgtata
     1381 atgacacaag caaatccttg tggagtaaga ctgaaggtaa tccttatgga gcgatgatga
     1441 caaatacaca aaatctaaac tcaaaccaaa aacttttagg tgatgtttat gcagagcttc
     1501 agcttattaa gaaccttaag attaaatcta cttttggaat taattattac gctaataatt
     1561 accatagttt aacgccgata tttagatttt cagattattc atacaatgaa gaccatgaga
     1621 ctgttaaaca aagcatgaac agtggtaata ctcttacatg gacaaataca gccagttatg
     1681 attttaaagt aaacgaggat catgctttca atgccttaat tggaactgaa gccataaaat
     1741 tccagggtgt agatatgagt gctgaaaact ggaatctggt accgcaaatg gatgatttta
     1801 atcatgcata tttaggtaac actacaggaa aagcttatat agataatact gatccccaaa
     1861 acccaaaagt tgttgaagca cgcactgtaa atggaggtcc tgcagtagat tatagccgac
     1921 tttcatattt cggaagattg ggttacaact ataaggaaaa atacatgttg aacgcaacat
     1981 ttagagcaga tggatctgca agatttgctt cgggacaccg ttggggctac ttcccatctg
     2041 tatctgcggg ttggacgatt agcaatgagt cctttatggc ttctacaacc gattggctcg
     2101 atcagttgaa ggtacgtgca agctggggac aggtaggtaa taataatatt gtaggtgatt
     2161 atagatatgc agcgcttatc aacacttcta caaatgttag tagtaataat cccgcagcat
     2221 tttacgattt tggtaattcc ggagtgaata cctccggagc ttatctgaaa ggattaccaa
     2281 ataaagatct taaatgggaa acatccgaac aaacaaatat tggggtagat gcccgcttac
     2341 ttaagaaccg tttgtctgta accggagatt tttatataaa aaccacaaaa gactggatag
     2401 tggaagcacc tcttccggta acttccggtt ttgatagctg gttgattaat ggtggtaatg
     2461 taaaaaacac aggagttgaa ttagcactta actggaatga taatatcggt gagtttaaat
     2521 acaatatcgg agtgaatggc gcttataaca ataatgttgt aggagagatt cctaccggag
     2581 atggcctgat acacggattg accaatatgt tgtacgccaa ttccgaggaa ttctatcgcg
     2641 cagaaaatgg acatgctctt ggatatttct ggggatacca aacagccgga cttttccaaa
     2701 accaagctga tattaccgca tggaaagctg caggaaatgg aattaaacaa tcggatgtac
     2761 aaccaggtga tgtgaaattc gtagaccaaa atcatgatgg tgttattgat aacaaagata
     2821 aaattgattt aggcaatggt atgccaaaaa tcaatattgg ctttaatctt ggttttcagt
     2881 acaaaaactt tgattttagt gtaaatgcta ccggagcaat aggtaacaaa atcgttcaag
     2941 cgtatggtca gactggtgca caatcgaact atacaactga gattttaaac cgttggacag
     3001 gtgatggaac ttcaaaccgt atcccacgcg tgacagttaa caatataaac tggttgttct
     3061 ctgatcttta tgtacatgca ggtgattatt tgcgtatcag taatatttcc cttggttacg
     3121 attttgctaa actcatcggt ttgaaaacaa tcagccagtg ccgtatatat ggttcagtac
     3181 aaaatgcgtt tacatttacc aaatacaatg gaatggatcc tgaaattggt tatggtgtag
     3241 aaaactgggt ttcaggcgtt gatttaggat attatccacg tcctaggact gtattggttg
     3301 gagttaacct caaattttaa atattttaat acatattgtt atgaagagat tcaaattaaa
     3361 tatattgata gcaggggcat tgacccttgg tcttttttcg tcatgttcag atagttttct
     3421 aaattcagaa ccgaaaacaa gccttcttga tgaaaacttt tataaaacag aagctgatgc
     3481 agaaatggca ttggtaggct gctacgatgg attccaatct acaagttccg gatttcctat
     3541 ttacacagtg gcagaagttg catcagatga atgttttggt ggaaccggag ccaatgatgg
     3601 ccctggttat caaatgattg accgtttaga taaaaccaag tcaacagcag ataacaatgt
     3661 ttttaatgat acatggcgta attattacaa agctattttc cgttgcaaca atttgttgca
     3721 aaaactgcca actattcaaa cgtggaaatc aaaaagcgat tccgctaaca acgttacaaa
     3781 aaaacgtatc gaaggagaaa cacgattctt acgtgcaatt atgtactttg atttggtgcg
     3841 tttgtttgaa aatattcctt tattgacaga gccatcagct gaaaattttc ctcaggctga
     3901 tccttcggat gtatataaat tgattgcgag cgatttgaaa tttgcggcag caaatatccc
     3961 tgccaatgcc tatccgaaag ctcaggcggc aacaaacgat ggacgtgtta cacgttatgc
     4021 agctgaagct ttgttggccc gtgtatattt attttataca ggatactatg ctaaagatga
     4081 tcttggggta acaaaaccag atgtcttagc tggtttggaa gatgtaattg ccagcaatca
     4141 attcgatact ataccttaca aaaaactttg gccggcagca agttatgttc ctgttcctgc
//
LOCUS       DATDNM010000093         6689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_118789, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000093 DATDNM010000000
VERSION     DATDNM010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6689
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118789"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1088)
                     /locus_tag="VI413_01625"
     CDS             complement(<1..1088)
                     /locus_tag="VI413_01625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY6913345.1"
                     /translation="MYIQHKKISIRILMVILIAIGFASCRNYKDLAKVPQPETKNLVR
                     DAAENSTDTTSLANIPWRTYFPDAKLQTLITEGLERGYNMQVAMTRIQQSEASLYMSK
                     SALLPSVGAAARVDYTRMSSGSRGTDVFGYTSNINTLGLTASWEADLWGKLNSQTKSK
                     YAAYLNTLEYKKLIQTTLISSIAKSYYSLMALDEQLRTTKETIVLLQKSTETLQALKD
                     AGQLTAAAVEQSKALLYNTQLSVFDLESRMRQQENAICVLIGRAPGAIERGSINDQII
                     PATMNGNVSVRTLANRPDVKQAELSLQSAYALTDAAKAAFYPSLSINTLSVGFAAGGF
                     SNLFSPASLAAEIIAGITQPIFSRGQLKG"
     gene            complement(1177..4329)
                     /locus_tag="VI413_01630"
     CDS             complement(1177..4329)
                     /locus_tag="VI413_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY6913346.1"
                     /translation="MLKTFIERPVLSTVISVLFVVLGIIGIFSLPIEQYPNIAPPTIR
                     VSTNYSGANAEAVLKSVIVPLEEQINGVEGMTYMTSSAANGGSASINVFFKQGVNPDM
                     AAVNVQNRVSQAAALLPAEVTRNGVTVQKQQSSTVLMIMLKSKNPDYDGKFMQNYVNI
                     NILPQIKRVMGVGDATVYGAKDYTMRVWLKPDVMKSYNITPGEVTAALQDQNIEAAPG
                     ELGANSNQSFQYALKYTGRLKNTEEFGNIIVRSKNAQVLRLKDVATVELGAQSYSIFT
                     KNNNTEAVVMAINQTAGSNAQDIIKEVKSVMEVAAKKFPSGISYEYQTDASEFLNASI
                     EKVLHTLLEAFILVFIVVFLFLQNFRATLIPAIAVPVAIIGTFFFLLLFGFSINLLTL
                     FALVLAIGIVVDDAIVVVEAVHAKMDAGMTDAKEAAIAAMGEIAPAIVSITLVMAAVF
                     IPVSFIGGTSGVFFKQFGLTLAIAILISAVNALTLSPALCAIFLKSEHNPDVHDKSLI
                     RRFYYYFNVGFTALTAKYKKTLEFLGKKKHRWITASIIVVFTAILAVTMKMVPNGFVP
                     NEDSGNVMGMISLSPGASLERTAQVTSQVTKIAESIPHVHNTISLTGLSFMSGMGSSY
                     GSVIMKMDPWNERDISTGEVTAILKQRTDSIKDAKFMFFGTPTLQGFGMSSGVELKMQ
                     DKTGGDVDKFYGITNEFLDKLRKRPEVMMVMNTFDPRFPQKQIEANMAKIKDAGLTLN
                     DVMSTLQAYVGSMYVSNFNSYGKQYRVVVQAAPQYRSKLDDLNGLTVKTSNGVMTPIS
                     EFITVKDVTGPQALTRFNLFTSMDVTVIPNYMKGYTSGDVLKALKEIDLPEGYGYDFG
                     GMTREEANSSNQTILIFLLCIIFVYLLLAALYESYILPLAVLLSLPIGLTGVFVFVLV
                     GMMNGSGIVNNIYVQISLIMLIGLLSKNAILIVEYALQRRQQGMSIVKAAVEGATARL
                     RPILMTSLAFIFGLLPLALASGAGAVGNKSIGISAVGGMLFGTVFGILVIPSLFIIFQ
                     NLHEHFSKTKIVTIDEHHEK"
     gene            complement(4353..5423)
                     /locus_tag="VI413_01635"
     CDS             complement(4353..5423)
                     /locus_tag="VI413_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY6913347.1"
                     /translation="MKSRKILVGSIALMLCITSCKNKQAEAKPADQAKAFPVATMAIQ
                     DVELQASYPAVLKGQEDIDIKARVEGYIDAIYVDEGTVVKKGQPLFKINSPSSVQLIE
                     NARANYNTAQLDVERIRPLAEKGIMSQVKLQAYENVLASAKATLNQAKATLNWATVTS
                     PVNGVVGAIAFRQGSLATNTTVLTTVSNISNVVAYFSVNEKELLSLLKEYKGATQAEK
                     IKNMPAVKLLLSDGTEYEETGRIETISGVVDATSGSVNFRAIFPNKHGLLRSGSSAKV
                     IIPSEHKGAIVIPQKATFAQQDKVLVYKFQGDSVIQKVVSVKATPDSQSYVVTEGLSV
                     GDKIVTDGIATLTNGQKIKEQK"
     gene            complement(5603..6061)
                     /locus_tag="VI413_01640"
     CDS             complement(5603..6061)
                     /locus_tag="VI413_01640"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY6913348.1"
                     /translation="METSKMPLGLVVVNMLKPMFSVLEMRAAKQTDIKLTMPQFVLLF
                     TISEEKEEVILKDMADKLGKDKSAILRMIDLLENKELVRRAVDLNDRRKNQLLVTKKG
                     ERLISDFRKIESDVNCELLEGLSDADMQAFYKVVNHIKAKADQLKIASTI"
     gene            6486..>6689
                     /locus_tag="VI413_01645"
     CDS             6486..>6689
                     /locus_tag="VI413_01645"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEY6913349.1"
                     /translation="MNKKIEELLNAQIVKEGYSSNLYLAMASWAEAEGYAGISEWLYA
                     QAEEEHIHMLKLLHYINDRDGRGI"
BASE COUNT         1908 a         1476 c         1290 g         2015 t
ORIGIN      
        1 cctttcaact gtcctctcga aaagataggc tgagtaattc cggctattat ttcggcggct
       61 aaacttgccg gactgaataa attggaaaac ccaccggcgg caaatcccac cgaaagcgtg
      121 ttgatgctaa gcgaaggata aaaagccgct ttagcagcat cggtaagcgc ataagccgat
      181 tgcaacgaaa gttcagcctg tttcacgtcc ggacgattgg ccagcgtacg caccgacaca
      241 ttaccgttca tagtggccgg tatgatctgg tcgttgatag atccgcgctc gatagctccg
      301 ggtgcacggc cgataagtac gcaaatggca ttctcctgtt gacgcatcct gctctccaga
      361 tcaaaaaccg agagttgagt attgtaaagc aatgctttgc tttgttctac agctgctgca
      421 gtgagttgtc ctgcatcttt caaagcctgt agggtttcgg tgcttttttg caacagcaca
      481 atggtttctt tggtggtacg caattgttcg tccaacgcca tcaagctgta ataacttttg
      541 gcaatagatg aaatcagcgt tgtttgaatc agctttttgt attcaagcgt attcaggtaa
      601 gcagcatatt ttgatttggt ttgactatta agctttcccc ataaatcggc ttcccagctg
      661 gcagtaagtc ctaatgtatt tatattagag gtataaccga aaacatcggt tcctctgcta
      721 cctgagctca tgcgtgtata atcaacgcgg gctgcagcac ctaccgaagg taaaagagca
      781 gatttagaca tatacaaact tgcttcagat tgctgaatac gcgtcattgc cacctgcatg
      841 ttgtagccac gttcaaggcc ttcggtaatg agtgtctgta gtttggcgtc ggggaaataa
      901 gtccgccagg ggatattggc cagcgaggta gtgtccgtgc tgttttcagc ggcatcccgc
      961 accaggtttt tcgtttcggg ctgaggcact ttggcaaggt ccttatagtt ccggcacgac
     1021 gcgaacccaa tggcaattag tatcaccatc aaaatccgta tgcttatttt tttatgttgt
     1081 atatacatat ctatattttt atgattatgt tgaatcgtac cgaaaaaatc agatcgtttt
     1141 ctacgcttcc aattttccgg tacaaataaa caagggttat ttttcgtgat gttcgtctat
     1201 cgttacaatt ttcgttttac tgaaatgctc gtgcaaattc tggaaaatga taaagagtga
     1261 cggaataact aatattccga atactgtacc gaataacata cctccgacag cactgatacc
     1321 aatggattta ttacccactg caccggcacc tgaggcaagt gccaacggaa gcaatccaaa
     1381 gataaaggcc agcgaagtca tcaaaatcgg acgcaaacga gccgtagctc cttcaacggc
     1441 ggctttcaca atactcattc cctgctgacg gcgttgcaat gcatattcca caataagaat
     1501 agcatttttc gacaacaaac caataagcat aatgagcgaa atctgtacat agatattatt
     1561 tacaatacca ctgccgttca tcattcccac aagaacgaaa acaaacacac cggtcagacc
     1621 gatgggcagc gaaagcagaa cggctaacgg cagaatgtaa ctttcgtaca aagcagccaa
     1681 cagaagatac acaaagatga tacacagtaa aaaaatcaga atcgtttgat tactgctgtt
     1741 cgcttcttca cgggtcattc caccaaagtc ataaccatat ccttcgggca aatctatttc
     1801 tttcaaagcc ttcaatacat cacccgaagt atatcctttc atatagttag gaataacggt
     1861 tacatccatc gacgtaaaca agttgaaacg cgttagtgcc tgcggaccgg ttacatcttt
     1921 tactgtaata aactcgctga tgggtgtcat aactccattc gatgttttca cagtcaaccc
     1981 attcaagtca tcgagcttag aacgatattg cggtgcagcc tgtactacca cacggtattg
     2041 tttaccgtat gaattgaagt tggacacata catacttccc acataggctt gcagggtcga
     2101 cataacatca ttcaacgtaa gtccggcatc cttaattttg gccatattgg cttcaatttg
     2161 tttttgaggg aaacgcgggt cgaaggtatt cataaccatc attacttccg ggcgcttacg
     2221 cagtttatcc agaaactcat tcgttatacc gtagaactta tccacatcgc cacctgtttt
     2281 gtcctgcatt ttcaattcca caccactgct cataccaaat ccctgaaggg ttggcgttcc
     2341 gaagaacatg aatttagcat ctttaatcga atcggttcgt tgtttcagta tagcggttac
     2401 ttcgcccgtt gaaatatcac gttcattcca tggatccatt ttcataatca ccgatccgta
     2461 cgagctaccc attccgctca taaaactaag tcccgtaagg ctgatcgtgt tatgtacatg
     2521 agggatagat tctgcaattt tcgtcacttg gctggtcacc tgtgcagtcc gttcgagcga
     2581 ggcaccgggt gaaaggctaa tcatacccat cacgtttcca ctatcttcgt ttggcacaaa
     2641 tccgtttggt accattttca ttgttactgc caaaatagct gtaaatacca caataatact
     2701 tgcggtaatc caacggtgtt tcttttttcc taaaaactcc agcgtctttt tgtatttggc
     2761 cgttagggct gtaaatccta cattgaagta ataataaaac ctgcgtatca gacttttatc
     2821 atgtacatcg ggattgtgtt ccgattttaa aaagatagca cacaaagcgg gactaagtgt
     2881 aagtgcattt actgccgaaa taagaatggc aatagcgagg gtaagaccaa attgcttgaa
     2941 gaacacacca cttgtaccgc cgataaaact tacaggaata aatacggcag ccatcaccag
     3001 cgtaatggaa acaatggccg gggcaatctc acccatagca gctattgcag cttctttagc
     3061 atctgtcata cctgcgtcca ttttggcgtg tacagcttct accaccacga tggcatcatc
     3121 taccacaatc ccgatagcca gtactaacgc aaagagcgta agcaggttaa tggaaaagcc
     3181 gaatagaagt aagaaaaaga atgttccgat aatggccaca ggcactgcaa tggcaggaat
     3241 aagtgtggct ctgaaattct gtaagaacag gaataccact ataaatacca ggataaatgc
     3301 ttccaataaa gtatgaagaa ccttctcgat agatgcatta agaaactcac tggcatccgt
     3361 ttgatactca taactgatac ctgaaggaaa ttttttggca gcaacttcca tcacgctttt
     3421 tacttccttg ataatatcct gtgcattgga tcccgcagtc tggttgatgg ccataactac
     3481 tgcttcggta ttattgtttt tagtgaaaat agaataactc tgagcaccaa gctccacagt
     3541 ggctacatct ttcaggcgca agacctgggc gtttttcgaa cggacgatga tatttccaaa
     3601 ctcttcggta tttttcaacc gtccggtata tttcagtgca tactgaaacg actggttgct
     3661 gttagccccc aactcgcccg gtgctgcctc gatattctga tcctgcaatg ctgccgtcac
     3721 ttcacccggt gtgatgttat acgatttcat tacatccggt ttcaaccata cacgcatggt
     3781 ataatcttta gcaccataca cagtagcatc accaactccc attacccgtt taatctgagg
     3841 caggatattg atgtttacgt agttctgcat aaattttcca tcataatccg gattctttga
     3901 ttttagcata atcatcaaaa ccgtactact ctgttgtttc tgaacagtca ccccatttcg
     3961 cgttacttcc gctggcagta aagctgctgc ctgcgaaacc cggttttgca cgttcaccgc
     4021 tgccatatca gggtttactc cctgtttgaa aaatacattt atagaagcag aacctccatt
     4081 ggcagcagac gatgtcatgt aggtcatccc ttccacacca tttatttgct cctcgagtgg
     4141 tacaattaca ctttttagca cagcttcggc attggcacca ctataattgg tagaaaccct
     4201 tatggttggt ggagcaatgt ttggatattg ttcaatcggc aatgaaaaaa taccaatgat
     4261 acccagcacg acgaaaagaa ctgaaataac cgtagataaa acgggtcttt ctatgaaagt
     4321 ttttagcatt ttcttttttg attttgagta atttactttt gttctttgat tttctggcca
     4381 ttcgtcaaag tggcaatgcc atcggtaact attttgtcac ccaccgataa accttcggta
     4441 acaacatagc tctggctgtc aggagttgcc ttcacgctaa ctactttttg aattaccgaa
     4501 tcgccctgga atttataaac cagcacttta tcctgctgag caaaagtggc tttctgagga
     4561 ataacaatcg ctcctttgtg ctcgcttgga ataataacct tagcactgga accgctgcgc
     4621 aacaaaccgt gcttgttggg gaatatagct ctgaagttaa ccgatcccga agttgcatcc
     4681 accacacccg aaatcgtttc gatacgtccg gtttcctcat attcggttcc atcggaaagc
     4741 aacagcttca cggcaggcat atttttaatt ttttcagcct gagtagcacc tttgtactcc
     4801 ttcagtaagg ataacaattc tttttcgtta accgaaaaat aggcaactac attggatata
     4861 ttcgatactg tagtcagcac tgtagtgttt gtagccaaac ttccctggcg gaatgcaata
     4921 gcacccacca caccatttac ggggctggta acagtagccc agttcaatgt agcttttgcc
     4981 tgattgagcg tggcttttgc cgaagccaat acattctcgt aggcctgaag cttcacctga
     5041 ctcataattc ctttttctgc caatggacgg atacgttcca catcaagttg ggctgtatta
     5101 taattggctc tggcgttttc aattaattga accgatgagg gagaattaat cttaaacagg
     5161 ggctgaccct tttttactac tgtaccttca tctacataaa tagcatcgat atatccctcc
     5221 acccgggcct ttatatcaat gtcttcctgg cctttaagca ctgcaggata gcttgcctgc
     5281 aattccacat cctgaatcgc catagtggca acaggaaagg cttttgcctg atctgccggc
     5341 tttgcttcgg cttgtttgtt cttacacgaa gtgatgcaca acatgagtgc tatacttcca
     5401 actaaaattt ttcttgattt catacactta actttacaac ttatacatta attaactata
     5461 ggagatatga tacctttaaa taaagaatta ataactctat ccatatcctt ttagttcggt
     5521 caaacgaatt tattttcgta ataatgacca gggtttattt atcttttttt tattctaaat
     5581 tgaatatgat tgactatgtc aattatattg ttgaagcgat tttcaattga tctgctttgg
     5641 ctttgatatg attcacaact ttgtaaaaag cctgcatgtc ggcatccgaa agtccttcca
     5701 gaagctcaca attcacgtcc gattctattt tgcgaaaatc agaaataagc cgttcacctt
     5761 ttttagtaac cagtagttgg ttttttcttc tgtcatttag atcaacagcc ctgcgtacca
     5821 gctctttatt ttctaataaa tcaatcattc tcaatatggc cgacttatct ttacctaatt
     5881 tatcggccat atctttcaga attacctctt ccttttcttc acttattgtg aaaagcaata
     5941 caaattgagg cattgtaagc tttatatctg tctgcttggc ggcacgcatt tccaatacgg
     6001 aaaacattgg tttcaacata ttgacaacga ccaatcctaa aggcattttt gatgtttcca
     6061 tgatttggat attaaatttt gtgcaaagga acgaataatg attgatatat gcaactaaat
     6121 atattgtgtt taaaataatg gcgtttaata caaagccaaa tcccttttta gagcaatgat
     6181 ggtggttgtt tctcaagaac attacagatt ggaaatgcaa atctgaaaat taaatgtaac
     6241 agaaacgagg cgattgtgat taatttgatc aggcaagcaa tattggttca attcaaaccc
     6301 ggcatattgc attttgggat ataattctat attcctaaaa ttattttcct aaaacctgct
     6361 atattttgca aacaagaact gtttgccgtt tgttagaagt tcattgagta ttaaaatttt
     6421 atgaataata taatcgtgag tttgtaaata tatatgatta ttaaacaaat taatacctga
     6481 ttgttatgaa taagaaaatt gaagaattat taaatgccca gattgtaaag gaaggctatt
     6541 cttccaattt atatttggca atggcatcct gggccgaagc ggaagggtat gccggaattt
     6601 cagaatggct ttatgcacaa gccgaagaag aacatataca tatgttaaag ctgttgcatt
     6661 acattaatga tcgggatgga cggggcatt
//
LOCUS       DATDNM010000094         4514 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_439184, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000094 DATDNM010000000
VERSION     DATDNM010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4514
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439184"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..299
                     /locus_tag="VI413_01650"
     CDS             <1..299
                     /locus_tag="VI413_01650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006800304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEY6913350.1"
                     /translation="KAQENLPKEEIINYVTEIYEPFTQDEVSVKIAQMLTPAEVDCPV
                     ELVYQTIEGLHKACPNHTGDWYFSGNYPTPGGNRLVNKAFLDYYEGKDGLTYGC"
     gene            335..670
                     /locus_tag="VI413_01655"
     CDS             335..670
                     /locus_tag="VI413_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY6913351.1"
                     /translation="MQSENFIFNSEAKWETVGEGMRRQILGYDDQIMLVKIEFKAGGI
                     GYVHQHVHRQCSYVVSGVFEFQVGEDIQIVNAGDGLYMEPNVLHGVKCLEEGVLIDTF
                     SPIREDFLK"
     gene            complement(840..2588)
                     /locus_tag="VI413_01660"
     CDS             complement(840..2588)
                     /locus_tag="VI413_01660"
                     /EC_number="5.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007486519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HEY6913352.1"
                     /translation="MENNALLTEVMAKAQIWLNGNYNEETKNEVRRLMEADDKTELIE
                     SFYRDLEFGTGGLRGIMGVGTNRMNIYTVGAATQGLSNYLKAQFPEVPQISVVIGHDC
                     RNNSRLFSEISANIFSANGIKVYLFEDLRPTPEASFAIRHLGCQSGIILTASHNPKEY
                     NGYKAYWNDGGQMILPHDENVITEVNKIKSVDDIKFNGNPELIQIIGEEIDKPYIDAI
                     KTISLSPDAIKRNNDLKIVYTPIHGTGVMLVPRALKAFGFTNIIPVPEQNVVSGDFPT
                     VISPNPEEPAALDMAVKKAIETDADIVMASDPDADRLGIAVKNDKGEWILVNGNQTAL
                     IFIYYIIRRWNELGKVTGKEYIVKTIVTTEIIKQIAERNGVEMFDCFTGFKWIAAVIR
                     ENEGTKQYIGGGEESYGFLAEEFARDKDAVSACTLMAEIAAWAKDNGKTLFELLQDIY
                     VEYGFGKEKGISVVRKGKSGAEEIAQMMSDFRNNPPKEIAGSKVALIKDYETLIATNV
                     ASGEQSALDFPTTSNVLQYFTEDGTKISVRPSGTEPKIKFYIEVRGEMKSRAEYDAAD
                     AAANQKVEAVRASLGV"
     gene            complement(2739..3875)
                     /locus_tag="VI413_01665"
     CDS             complement(2739..3875)
                     /locus_tag="VI413_01665"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004312824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HEY6913353.1"
                     /translation="MKKMFFSLAVVGLLLAACTPKSSDTTLSGLVKKNFQTEKDGKKT
                     DLYVLKNKAGMEVCITNFGGRIVSIMVPDKAGKMQDVVLGFDSVQDYINVPSDFGASI
                     GRYANRIGQAKFTLDSVEYKLPANNFGHCLHGGPKGFQYVVYDAKPIDDQTLELTYLA
                     KDGEQGFPGNLTCKVTFKLTDDNAIDINYEATTDKATVVNMTNHSYFNLNGDPKQTIL
                     DNLLTINADSYTPVDSTFMTTGEIVPVKGTDMDFLAPTAVGSRINNYSFIQLKNGNGY
                     DHNWVLNTKGDVKQVAATVESPVTGIVLNVFTNEPGIQVYTGNFLNGTVKGKKGIVYN
                     QRAALCLETQKYPDTPNKPQWPSAVLRPGETYKSECIFAFSVKK"
     gene            4258..>4514
                     /locus_tag="VI413_01670"
     CDS             4258..>4514
                     /locus_tag="VI413_01670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913354.1"
                     /translation="MKKNIFLFASAFTLLFALNSCKKDVLDLDKNLKFSTQTVEQQKQ
                     TIEQNGIDFINKVDAMQNTKAMIALQAFSSNTGGPDFVKPLA"
BASE COUNT         1364 a          806 c          832 g         1512 t
ORIGIN      
        1 caaaagctca ggaaaattta cctaaagaag agataattaa ttatgtaact gaaatttatg
       61 agccatttac tcaggatgaa gtttcagtga aaatagcaca aatgcttacg cctgcagaag
      121 ttgattgtcc ggtagagtta gtgtatcaaa ccattgaagg acttcacaaa gcttgtccaa
      181 atcataccgg tgactggtat ttttcaggaa attatccaac cccaggtggt aatcgtttag
      241 tgaataaagc ttttttagat tattatgaag gtaaagatgg attgacgtac ggctgttaat
      301 caatcgtatt taaaaatcat tcaataaatt cagtatgcaa agcgaaaatt ttatctttaa
      361 ttccgaggct aaatgggaaa ctgtaggaga aggaatgcgt cgtcaaatcc tgggttacga
      421 tgatcagata atgttggtga aaattgaatt taaagccggg ggcattggtt atgttcatca
      481 acatgttcac cgtcaatgtt cttatgttgt cagtggagtt tttgaatttc aggtaggtga
      541 ggatattcaa atagttaacg cgggtgacgg actttacatg gaacctaatg ttttacatgg
      601 agttaaatgt ttagaagaag gtgttttgat tgatacattt agtccgattc gggaagattt
      661 tttgaagtga tttattctat atttaaacaa aagtgcctgg ttctgtattg gaccaggcat
      721 ttttgttttt attttaattg cagtgtattt cagtatcgaa ttaaaaagat gtgtgtaaca
      781 aaaaaaaagt tgcaaggctt aattaacctt acaacttttt tatggtgagt tttattgtac
      841 taaactccta atgaagctct tactgcctca actttttgat tggcagctgc atcggcagca
      901 tcatattcag cacgtgattt catttcacca cgaacttcta tgtagaattt gatttttggt
      961 tcagttcctg aaggacgaac agaaatctta gttccatcct cagtaaagta ctgtaataca
     1021 ttagaagtag tagggaaatc aagggcagat tgttctccag aagctacatt tgttgctata
     1081 agagtttcat aatctttaat aagggccact tttgaaccgg caatttcctt tggaggattg
     1141 ttgcggaaat cgctcatcat ttgagcaatt tcttcggcac cggatttacc tttacgcact
     1201 accgaaatac ctttttcttt gccaaatccg tattcaacat agatatcctg caataattcg
     1261 aacaatgttt tgccattatc ttttgcccat gcagcaattt cagccatcaa tgtacatgca
     1321 gaaaccgcat ctttgtcgcg ggcaaattct tcagccaaga atccgtagct ttcttctcca
     1381 ccaccaatgt attgtttggt accttcgttt tcacgtatca cggctgcaat ccatttaaat
     1441 ccggtgaaac agtcgaacat ttcaacacca ttgcgctcag caatttgttt gataatttca
     1501 gtagttacta tcgtttttac aatatattct ttgccggtta ctttaccaag ttcattccag
     1561 cgacgaatga tatagtaaat aaaaatcaat gcggtttgat ttccgttaac cagaatccat
     1621 tcgcctttat cattttttac tgcaatacct aaccggtctg catcagggtc agaagccatt
     1681 acgatatcag catctgtttc gattgctttt tttactgcca tatccaatgc tgcaggttct
     1741 tccggatttg gagaaataac ggttgggaaa tcaccgctaa ctacgttttg ttcaggtaca
     1801 ggaatgatat ttgtaaatcc gaacgctttt aatgctcttg gaaccaacat aacacctgta
     1861 ccgtgaatgg gcgtgtacac aatcttcaaa tcattgttgc gtttgatagc atccggagat
     1921 aacgaaattg ttttaattgc atcgatataa ggtttgtcaa tttcctcacc aataatttgt
     1981 atcagttcag gatttccatt gaatttgata tcgtcaacac ttttgatttt gtttacttcg
     2041 gtaataacgt tttcatcatg tggcaaaatc atttgaccgc catcattcca gtatgctttg
     2101 tagccgttat attctttcgg attatgagaa gcggtaagaa taattccact ctggcaaccc
     2161 aaatgacgaa tagcgaagga agcttccggg gtaggacgga ggtcttcgaa taaatatact
     2221 ttaatgccgt tggcagaaaa aatattggca gatatttcag agaaaaggcg gctgttatta
     2281 cggcagtcgt gtccaataac cacactgatt tgaggaactt caggaaattg agctttcagg
     2341 taattgctta atccctgagt ggcagcacca actgtgtaga tgttcatacg atttgttcca
     2401 acacccatta tgccacgtaa acctccggta ccgaattcca aatcacgata aaacgattct
     2461 ataagctctg ttttatcatc agcttccatt aagcgacgaa cttcattttt agtttcttcg
     2521 ttatagttgc cattcagcca tatttgggct ttggccatta cttctgttag taatgcattg
     2581 ttttccatat cgtttgttat ttgattagta aaattaattg ggagtataaa aatacaactt
     2641 ttttttgaaa gtggaaaatg cattataaaa gaatcagctt taccaaacct gcaagcagag
     2701 ttcgataaag ctgattttga atgtgttttt ttgtaacttt attttttcac agagaatgca
     2761 aaaatacatt cgcttttgta agtttctccc ggacgaagca ctgccgatgg ccattgtggt
     2821 ttgttagggg tgtcagggta tttttgagtt tcaaggcata aagctgcacg ttggttataa
     2881 acaattcctt ttttaccttt tacagttcca ttcaggaagt tgccggtgta aacctgaata
     2941 ccaggctcat ttgtaaatac attcaataca atgcctgtaa cgggagattc aactgtagca
     3001 gccacctgtt taacatcgcc ttttgtgttc aatacccagt tatggtcata gccgttacca
     3061 tttttcaatt gaatgaaact atagttgttg atacgtgaac caactgccgt tggagctaag
     3121 aaatccatgt ctgtaccttt taccggaaca atttctccgg tagtcataaa ggttgaatca
     3181 accggagtat acgaatcggc atttatagtt aacaagttat ctaaaattgt ttgttttgga
     3241 tctccattca ggttgaaata gctatggtta gtcatgttta ctacagttgc tttgtcggtt
     3301 gtagcttcat aattaatatc aatagcgtta tcatcagtca gtttgaaagt tactttgcaa
     3361 gtcaggttgc ccggaaatcc ttgttcacca tcttttgcca ggtaagtcaa ctcaagagtt
     3421 tggtcatcga tcggttttgc atcgtacacc acatactgaa atcctttagg acctccatga
     3481 agacagtgtc cgaaattatt tgcaggcaat ttatattcaa cactatcaag cgtgaatttt
     3541 gcttgtccga tacggtttgc ataacggccg atagatgctc cgaaatcact gggaacattg
     3601 atataatcct gtacagaatc aaatccaaga actacatcct gcatcttgcc ggctttatcc
     3661 ggaaccatga tagaaacaat acgaccgcca aagtttgtga tacaaacttc catacctgct
     3721 ttgtttttca aaacgtacaa atctgttttt ttaccgtctt tttcagtttg aaaattcttt
     3781 tttaccaagc cggaaagagt tgtgtcagaa cttttgggag tacaggcggc caataataag
     3841 ccaactactg ccaatgagaa gaacattttt ttcattgtaa ataaattgtt tgagggttta
     3901 atattataag ttattactta tttgttttta tcccgacaaa gttattaaaa attctaatgt
     3961 ttcaaatagg gcatactgca gaaaactggt caaattaggt caattttgta tataaatggc
     4021 agacaaaatg ctattgagat tgtttaatca agaaaaagta atggtttgta tagagaattt
     4081 acttactgga atagaaaaaa tcctttttat ttcaaaatga aattcttttc ttgttttctt
     4141 gatgttattt tcttcaattt cccaaaaaat attgaaaaac gttacaaatt gaaaaataaa
     4201 actattattt ttgttgaaac attttctaca aaactataac attaaaaaat tatcgctatg
     4261 aaaaagaaca tttttctctt tgccagtgca tttacattgc tttttgcact aaattcctgt
     4321 aaaaaagatg ttttggattt ggacaaaaat ctgaaatttt caacacagac ggtagaacaa
     4381 cagaaacaaa ccattgagca aaacggcatt gattttatca ataaagttga tgccatgcag
     4441 aacacgaaag caatgattgc tttgcaggct ttttcaagta atacgggtgg acctgatttt
     4501 gtaaaaccac tggc
//
LOCUS       DATDNM010000095         2419 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1613603, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000095 DATDNM010000000
VERSION     DATDNM010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2419
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1613603"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1150
                     /locus_tag="VI413_01675"
     CDS             <1..1150
                     /locus_tag="VI413_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HEY6913355.1"
                     /translation="FTSNNKAVLRKEVNAAFDRLKALYNPIVLEGAGSISEINLREVD
                     LVNMSMAAHANAVVILVADIDRGGVFASVYGSILLLNEEERKLVKGILINKFRGDIRL
                     FESGVKMLEELCGIPVVGVVPYYKDIHIEEEDSVMLHTKNRAAQSGKVNIVVILLQHM
                     SNFTDFNALEHDERVHLFYSNQPSDISNADIIIIPGTKNTLHDLQILRRDGIAQAILQ
                     AHQNGKTILGICGGYQMLGRELHDPNQIESDLMQMPGLNLLPISTTLEGEKITRQVNF
                     RFKGSQTECKGYEIHNGRTDLLADIEPLNVLEDNSNDGCISNNCIGTYIHGILDNSEF
                     VDYLLAAHLTDKSTESFNYFKFKEEQFDKLADHVRSHVNMDLIYSFIK"
     gene            1147..2175
                     /locus_tag="VI413_01680"
     CDS             1147..2175
                     /locus_tag="VI413_01680"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6913356.1"
                     /translation="MINGHGDEIQTELIANFSSNVWYGADNSALYQHLSTSLPQIARY
                     PEADAHSLKLALATQNEVEASQIIVCNGSTEAFYLIANAFSGKKSLIVTPTFSEYADA
                     CRIHNHIVYQTNRNNISENIERLQPDLVWICNPNNPDGHCFTATELIQLFCCFPISTF
                     IIDQAYIDFTLTEANIIPEIPHCNNVIVVQSLTKRFAIPGLRLGYIVSSKESINNIEK
                     YKMPWSVNSLAIEAGKYILNGANKDFKVEVWLKKSILFRKQINDLGNYETFETTTPYF
                     LVKLKRGKAKDLKSFLLKEHILIRDATNFEGLEGEFIRICTLSTELNNLLLLNLKIWS
                     QFTSPSSL"
     gene            2142..>2419
                     /locus_tag="VI413_01685"
     CDS             2142..>2419
                     /locus_tag="VI413_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005645629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0048472 - threonine-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HEY6913357.1"
                     /translation="MEPIYFTLLALVLGFVLDQLLGDPEALPHPVVGFGKVISFFEKR
                     LNKGRFRLANGAITTLILAFSTYILCWETIDILNKIHPLAGVSGTLIL"
BASE COUNT          777 a          469 c          460 g          713 t
ORIGIN      
        1 tttcacttcg aacaataaag ctgtgttgcg caaagaagta aacgctgctt tcgaccgtct
       61 taaagccctt tataatccaa tagttttgga aggtgccggc agcatttcgg aaataaacct
      121 gcgcgaagtg gatttagtca acatgtccat ggctgcacat gcaaacgcgg tagttatttt
      181 ggtggctgat attgaccgcg gtggtgtgtt tgcctctgtt tacggttcta tcctgctatt
      241 gaacgaagaa gaacgaaaac tggtgaaagg gattctaatc aataagttca ggggtgatat
      301 acgtttattc gaatcaggag tgaaaatgct cgaagaactt tgcggcattc cggtggtagg
      361 cgttgtgcct tattacaaag acattcatat agaagaagaa gattcggtaa tgcttcacac
      421 caaaaaccgc gcagcgcaat cgggtaaggt aaacattgta gtgatacttc tgcaacacat
      481 gtctaacttc actgatttca acgcattgga acatgacgaa cgtgtgcatc ttttttactc
      541 caaccaacct tccgatatta gcaatgcaga tattattatc attcctggga ctaaaaacac
      601 gcttcacgac ctgcaaatcc ttcgtcgtga cggaatagcc caagctattt tgcaagcaca
      661 ccaaaacgga aaaaccatac tgggaatttg cggaggctat caaatgcttg gacgtgaact
      721 acacgatccg aatcagattg aaagcgatct gatgcaaatg cccggcctga acctgttgcc
      781 cataagcaca accctcgaag gcgaaaaaat aacccgtcag gtaaattttc gtttcaaggg
      841 ctcacaaacc gaatgcaaag gatatgaaat tcataatgga cgaacagact tgctggcaga
      901 tattgaacct ttaaatgtat tggaagacaa ctctaatgat gggtgcataa gtaacaactg
      961 cattggaact tacattcatg gaatcttaga caatagcgag ttcgtagatt atttacttgc
     1021 tgctcatttg actgataaat cgacggaatc attcaactat tttaaattca aagaagaaca
     1081 attcgacaaa cttgccgatc atgttcgtag tcatgtaaat atggatttaa tctactcatt
     1141 cataaaatga taaacggcca cggagatgaa atacaaaccg aactgattgc taatttcagt
     1201 tccaacgttt ggtatggtgc tgataattca gctctatatc agcatctttc aacgtcattg
     1261 ccgcaaattg cccgctatcc ggaagcagat gcacattcat tgaaacttgc tttagcaaca
     1321 caaaatgaag ttgaagcttc tcaaataata gtatgcaatg ggtcaacaga agctttttac
     1381 ctgattgcaa atgcattttc gggtaaaaaa tcattgattg tcactcctac tttttctgaa
     1441 tatgcagatg cttgccggat tcataatcac attgtttatc aaacaaatag aaataacata
     1501 agtgagaata ttgaaaggtt gcaaccggat ttggtttgga tttgcaaccc gaataaccct
     1561 gacggacatt gctttacagc tactgaatta attcaattat tttgctgctt tccaatctca
     1621 acttttatta tcgatcaggc ttatattgat ttcactttaa ctgaagccaa tatcattcct
     1681 gaaataccac attgtaataa tgtaattgta gtccagtcgc ttaccaaacg ttttgccatt
     1741 ccgggattgc ggcttgggta tattgtcagt tctaaagaaa gtatcaataa tattgaaaaa
     1801 tacaaaatgc cgtggtcagt caattcactt gccatagaag ccggcaaata cattttaaat
     1861 ggtgcaaaca aagactttaa agttgaagta tggcttaaaa agtctatact ttttagaaag
     1921 caaatcaatg atttaggtaa ttatgaaaca tttgaaacaa ctacaccgta ttttctcgta
     1981 aaactaaagc gaggaaaggc aaaagaccta aaatcatttc ttttaaaaga gcatatttta
     2041 atccgtgatg cgactaattt cgaaggttta gaaggagaat ttatccgaat ttgcacctta
     2101 tcaacagaat taaataattt actactattg aatttaaaaa tatggagcca atttacttca
     2161 ccctcctcgc tttagtgctt gggtttgtac ttgatcaact tttgggcgat cccgaagcat
     2221 tgccgcatcc cgtagttggc tttggaaaag tgatttcttt cttcgaaaaa cgactcaata
     2281 aagggcgctt ccggcttgcg aatggcgcaa taacaactct catacttgca ttctcaactt
     2341 atattttgtg ttgggaaaca atcgatattt taaataaaat acatccttta gccggagttt
     2401 caggcacatt gatacttat
//
LOCUS       DATDNM010000096         2884 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1294184, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000096 DATDNM010000000
VERSION     DATDNM010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2884
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1294184"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1580
                     /locus_tag="VI413_01690"
     CDS             <1..1580
                     /locus_tag="VI413_01690"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6913358.1"
                     /translation="EHSYVAGLEQQIIINEIARVCFVGPKYAQDKWDFLDTADVLILP
                     SYSENFGIVVAEALAMGIPVITTKETPWKELETKQCGWWIDLSVANIIQSITDATTCS
                     PDKLVEMGRRGRKLIEQNYDIKAVAKHIKQLYDWILGAVEKPGFVYLPDNTSKKNPAT
                     LKIIHFITSIDKSGGGTTAFLQLISGELKKEVDLVIVTKETTQSVELKDIKVRFLNLS
                     ISRLLVLEKEFLHLLKAEQPDIVHINGIWEPQTWLFQKTAQQLGIKVIMSPHGMLEPY
                     ILNRHPLKKQLALALYQRKAVKSVDYLHATAQSELKQFRKLGYLQPAEIIANGIELAD
                     IKSKTTWNEVRNILFLSRVHPKKGLEILIEAVARLENKQLLLITIAGEGEPDYVESLK
                     KLAVEQHVSHLFNFIGPVYGCRKWDLYENSDLFVLPTYSENFGIVVAEALATGIPVIT
                     TTGTPWQELETNRCGWWIDLNVQNLVKTLNEAINKTSAELKEMGLRGRKLIGDKYEIK
                     AVSASMFLFYNKIIKGQ"
     gene            1608..2228
                     /locus_tag="VI413_01695"
     CDS             1608..2228
                     /locus_tag="VI413_01695"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF018696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6913359.1"
                     /translation="MSDYQDYNWKNDELTNAHNCFMLPIIKMLPTDGSPILDIGCGNG
                     SFANYLISKGYNVYGTDASITGVSIANKKNPERFFIQDLSKDELPEELKEIKFKTIIS
                     TEVIEHLYNPRKYILFCKSILERSSGGNLIISTPYHGYLKNLILAVFNAWDKHLTVLW
                     DGGHIKFWSKKTLSELLKEYDFKTIEFKGCGRIPFVWKSMVINSKI"
     gene            2232..2789
                     /locus_tag="VI413_01700"
     CDS             2232..2789
                     /locus_tag="VI413_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009319462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative colanic acid biosynthesis
                     acetyltransferase"
                     /protein_id="HEY6913360.1"
                     /translation="MNPIKVDLSKYESSFSISNKLGRICWNIIYCILFRPFSSVLFRS
                     WRNFILRLFGAKLSSQVNIYASAKIWAPWNLEMGENACLGPYVKCYNQGKISIGANTV
                     VSQDAYLCASSHDISDPKHALILKPIVIEDQVWVAADAFIGPGVTIMQGAVVGARSAV
                     FKDVEAWTVVGGNPAKFIKKRELTK"
BASE COUNT          952 a          471 c          623 g          838 t
ORIGIN      
        1 gtgaacatag ctatgtggca ggattagagc aacagataat aataaatgaa atagcccgtg
       61 tgtgttttgt gggtccgaaa tatgctcagg ataaatggga cttcttagat acagccgatg
      121 tgttgatatt accatcgtac agcgagaact ttgggatagt ggttgccgaa gcattggcta
      181 tgggtattcc ggtaattacg actaaagaaa caccatggaa agaactggaa acaaaacaat
      241 gtggctggtg gattgattta tcggtagcga atatcatcca atccattacc gatgcaacaa
      301 cctgtagtcc cgataaactg gtggaaatgg gacgacgggg caggaagtta attgagcaga
      361 actacgatat taaagcggtt gccaaacaca ttaaacagtt atacgactgg atattgggtg
      421 ctgtagaaaa acccggtttt gtttatctgc cggataatac ttcaaaaaag aaccctgcta
      481 ctctcaaaat aattcatttt attacctcca ttgataaatc aggaggagga accactgcat
      541 ttttacagtt gatatcgggt gaattaaaaa aagaggttga tctagtaata gtaacaaaag
      601 agacaactca gtcggttgaa ttaaaggata tcaaggttcg atttttaaat ttatctatct
      661 cccggttact tgtgctggaa aaagagtttt tacatttgct caaagccgaa caaccagata
      721 tagtgcatat aaatgggatt tgggaaccgc aaacctggtt gtttcagaaa acagcacaac
      781 aattggggat taaagtaata atgtcgcctc atggtatgtt agagccttat atcctgaatc
      841 ggcatccgtt gaaaaaacaa ctggcattgg cattatatca acgtaaggct gtaaaaagtg
      901 ttgactacct gcatgccacc gcacaatcgg aattgaagca atttcgcaaa ctgggctacc
      961 tgcaaccagc cgaaataatt gcgaatggta ttgaactagc cgatataaaa tccaaaacaa
     1021 cctggaacga ggtacggaat attttatttc tttcgcgcgt tcatcccaaa aaagggctgg
     1081 aaatattgat tgaagcagtg gcacggttgg aaaataaaca gttattgctg attaccattg
     1141 caggtgaagg ggaaccggac tatgtggaat cgctaaaaaa actggcagtt gaacaacatg
     1201 tttcgcacct gtttaatttt atcggaccag tttatggttg tcggaaatgg gatctctacg
     1261 aaaattcgga tttatttgtt ttgccgactt acagcgagaa ctttggaata gttgtggctg
     1321 aagcccttgc cacaggaata cctgtaataa ctactacggg cactccctgg caggaactgg
     1381 aaaccaatcg gtgtggctgg tggatagatt tgaatgtgca aaatctggta aagactttaa
     1441 atgaagctat aaacaagact tcggctgaac taaaagaaat gggtctgaga ggaagaaaac
     1501 tgataggaga taagtatgaa ataaaagctg ttagtgcaag tatgtttcta ttttataata
     1561 aaattataaa aggtcaataa tttaaccata ttaaagtttt ttaaacgatg tcagattatc
     1621 aagactacaa ttggaaaaat gatgagctta ccaatgctca taattgtttt atgctgccta
     1681 tcataaaaat gctacctact gatggttctc caatactgga cataggctgt ggaaacggat
     1741 cgtttgcaaa ttatttgata agtaaaggat acaatgtata tggtacagac gcttctataa
     1801 ctggtgtaag tattgcaaat aaaaaaaatc ccgaacgttt ttttattcaa gacttatcaa
     1861 aagacgagtt gcctgaagaa ttgaaagaaa taaaatttaa aacgattatt tctaccgaag
     1921 taatagaaca tctgtataat ccacgtaaat atattttgtt ttgtaaatct atccttgaaa
     1981 gatcttcggg tggaaatttg attatttcaa ctccatatca tggttattta aaaaacctca
     2041 ttctcgccgt ttttaatgca tgggataaac accttacagt actttgggat ggtggtcata
     2101 taaaattctg gtcgaaaaag accttgagtg aattgttgaa agaatatgat tttaagacta
     2161 tcgaatttaa aggttgtgga agaataccct ttgtttggaa gtcaatggtt attaattcca
     2221 aaatttgaat catgaatccg attaaagtcg atttatcaaa gtacgaatcc agtttcagca
     2281 tatccaacaa acttggacga atctgttgga atataattta ttgtattttg tttcgccctt
     2341 tcagttccgt attgtttcgg agttggcgta actttatcct ccggttgttt ggtgcaaaat
     2401 tatcatcgca ggttaatata tatgccagtg ctaagatatg ggcaccctgg aatttggaaa
     2461 tgggagaaaa tgcttgcctg ggtccttatg taaaatgtta caatcaggga aaaatcagca
     2521 ttggagcaaa tacagtagtt tcgcaggacg cgtatttatg tgcgtcgagc cacgatattt
     2581 cagatccaaa acatgcattg atactgaaac ccattgtgat tgaagatcag gtgtgggtgg
     2641 cagccgatgc atttattggt ccgggagtta ctattatgca aggggctgta gtgggagcga
     2701 ggtctgccgt atttaaagat gtagaagcct ggacagtggt gggtggtaat cctgcaaaat
     2761 ttatcaagaa acgagaacta acaaaataat atgtccacca tatcagccat aatcctaact
     2821 tataacgagg aattgcatat tgcccgatgc attcattcac ttaagggagt tgtagataca
     2881 attt
//
LOCUS       DATDNM010000097         3421 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1507539, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000097 DATDNM010000000
VERSION     DATDNM010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1507539"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1207)
                     /locus_tag="VI413_01705"
     CDS             complement(<1..1207)
                     /locus_tag="VI413_01705"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEY6913361.1"
                     /translation="MNVVTKTITLGDGRTISIETGKLAKQADGSVMVRMGDTMLLATV
                     CSAKDAVPGTDFMPLSVDYKEKFASSGRFPGGFLRREGRASDYEILVSRLVDRALRPL
                     FPDDYHAETFVTVTLFSADGADMPDALAGLAASAALAVSDVPFNGPISEVRVARINGE
                     FVINPTFEALENADMEIIVAATLDNIMMVEGEMKEVSEDDLLAAMKVAHEAIKVQCQA
                     QIELMQEVGKTVKREYCHEENDEDLKKDVWAKTYDKAYALATACNTDKHSRGENFEAV
                     KAEYIAGLDPEVAAAKKGLISKYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWSEV
                     DYLPGTHGSAVFTRGETQSLTTVTLGTKMDEKLVDEALIRGKERFLLHYNFPPFSTGE
                     ARASRGVGRR"
     gene            complement(1447..2127)
                     /locus_tag="VI413_01710"
     CDS             complement(1447..2127)
                     /locus_tag="VI413_01710"
                     /inference="COORDINATES: protein motif:HMM:NF022142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HEY6913362.1"
                     /translation="MRKATRIIIFAFLAWAYPHFLFAQTNDAGVIGSLSLSKDIGRNM
                     SASIEQELRFNQNISSFDRSLTSVSVDYSLIKKLLKAELNYDFIYQRQDTYFEFRHRA
                     AASLSAQLKYNSFGFKLRTRGQSTWRDESMGDYKFNPKYVWRNKLECEYTIFGSPVKP
                     FVSGEIFCPLNSANGFFMDGYRAVIGAKYRMSSRTTLQFLLRYDQEVQVANPKSIVYG
                     GIGWNYKL"
     gene            complement(2127..2768)
                     /locus_tag="VI413_01715"
     CDS             complement(2127..2768)
                     /locus_tag="VI413_01715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005930137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4956 domain-containing protein"
                     /protein_id="HEY6913363.1"
                     /translation="MGIPIFQDDALIQLLIRFGFNILICWIIIRYFYYRKSGRRDFLF
                     TFTLFAVTIFLLIFLLDSVKLQIGMALGLFAIFGIIRYRTEQVSIREMTYLFVIIGIS
                     VINGLAMTISISELLVANVLFIGAIALMESRRFVKHTATKAVLYERIDLIKPEKYPEF
                     KADLEERTGLKIIRAEVGHIDFLRDVAFVKIYYRPEGNDPNSIDTITRLSDFS"
     gene            complement(2836..>3421)
                     /locus_tag="VI413_01720"
     CDS             complement(2836..>3421)
                     /locus_tag="VI413_01720"
                     /inference="COORDINATES: protein motif:HMM:NF020916.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polyphosphate polymerase domain-containing
                     protein"
                     /protein_id="HEY6913364.1"
                     /translation="IYFDTEDVIMYTMHHNGKLNRYKIRTRTYLNSGHAFLEIKIKNN
                     KGRTSKKRIEIHGDDFQSMAFTEAENSFIHKRVPYSPESLKPQLQNYFQRVTLVDKNK
                     TERVTLDMGLVFRNTTNDLTKSVDDLVIVEMKQDGVSRSYFREYLYELNVLPGSMSKY
                     CLGMVLVNPAVKYNRFKKKLRKISKITKKDYDSI"
BASE COUNT         1103 a          755 c          602 g          961 t
ORIGIN      
        1 cacgacggcc aacaccacgg gaagcgcgag cttctccagt tgagaatgga gggaagttat
       61 agtgcaacaa gaaacgttct ttaccacgga tcaatgcttc atcaaccagt ttttcatcca
      121 ttttggtacc caatgtaaca gtagtcaacg attgagtttc accacgcgta aacacagctg
      181 aaccgtgagt tccgggaagg taatcaacct ctgaccagat tggacgaatt tcggtagttt
      241 tacgaccatc caagcgtttg ccttcatcca aaatagaacg acgcatagct tctttttcca
      301 catcgtggta atatttgcta atcaatcctt ttttagcagc agctacttca ggatcaagtc
      361 cggcaatgta ttcggctttt acagcctcga agttttcacc acgtgaatgt ttgtcagtat
      421 tgcaagcagt tgccaaagca tatgctttat cataagtttt tgcccaaaca tcttttttca
      481 gatcttcgtc attttcttcg tggcaatatt cgcgtttcac agtttttcca acctcttgca
      541 tcaattcaat ctgagcttga cattgaactt tgatagcttc gtgagctact ttcatagcag
      601 ccaacaaatc atcttcactc acttctttca tttcaccttc caccatcata atattatcca
      661 gagtagcagc aacaatgatt tccatgtcgg cgttttccaa cgcttcaaaa gtaggattga
      721 taacgaattc gccattaatg cgagccacac gtacttctga gatcggaccg ttgaaaggca
      781 catcagacac tgctaacgca gcagaagcag ctaaaccagc caaagcatca ggcatatcag
      841 caccatcagc agagaaaagg gttactgtaa caaaagtttc agcgtggtaa tcatcaggga
      901 acaaagggcg caaagcgcgg tcaacaaggc gtgaaactaa aatttcgtaa tccgaagcac
      961 ggccttcgcg acgaaggaaa ccacccggaa aacgacctga agaggcaaat ttttctttat
     1021 aatcaaccga aagcggcata aaatccgttc cgggtacagc gtctttggca gaacaaactg
     1081 ttgccaaaag catggtatcg cccatgcgaa ccattacaga accatcggct tgttttgcca
     1141 acttacctgt ttcaatcgaa atggtacgac catcacccaa tgtgatagtt tttgtaacta
     1201 cattcataaa attacatttt ttctttttaa acttctaaat ttcgcgcgca aagatacgac
     1261 attttttctc aagaataatt aaaacgccag taaaatagtc attttttgag gtttgataac
     1321 tacatgaaaa caaaatgatt cagttttaaa acaacacata gctgaattaa ataaaaaaac
     1381 actgattccc gggtccgatc agaatcagga cagccagaaa tcagtgaaaa gagaagtaag
     1441 ttttcgttat agcttatagt tccaacctat gccgccatat acaatacttt tggggttggc
     1501 aacctgaact tcctggtcgt aacgcagcaa aaactgaagc gtagtacgag atgacatgcg
     1561 atattttgca ccaattacag cccggtatcc atccataaaa aatccattgg cactattcaa
     1621 cggacaaaaa atttcgccac taacaaacgg ctttacaggt gacccaaaaa tcgtatattc
     1681 acattccaac ttattacgcc aaacatattt gggattaaat ttataatcac ccatactctc
     1741 atcgcgccat gtcgactgac cacgggttcg caatttgaaa ccaaacgaat tatatttcag
     1801 ttgggccgac aaagaagcag cagccctgtg ccggaattca aaataagtat cctgacgttg
     1861 ataaataaaa tcgtaattca gttcagcttt cagtagcttt tttataagtg aatagtcaac
     1921 gctaaccgaa gtaagcgacc ggtcaaacga agaaatattt tgattaaacc taagttcctg
     1981 ctcaatactg gcactcatat ttcgtccgat atctttcgat aatgacaacg agccaataac
     2041 acctgcatca tttgtttgtg caaacaagaa atgaggataa gcccaggcga gaaaggcaaa
     2101 aataattatt cgggttgctt ttctcattaa gaaaaatcgc taagtcgtgt tattgtatca
     2161 atggaatttg gatcgttacc ttctggacga taataaatct taacaaaagc tacatcccga
     2221 aggaaatcaa tgtgcccaac ttcagccctt attatcttca atccggttct ttcttccaaa
     2281 tcagccttaa attcaggata cttttctggc tttatcaaat caattctttc gtacaaaaca
     2341 gccttcgtgg cagtatgttt cacaaaccgc cggctttcca tcaaagcaat agcaccaata
     2401 aacaatacat tggcaaccaa caattcagaa atactgatag tcattgccag cccattgatg
     2461 acagagattc cgataataac gaacagataa gtcatttccc gaattgaaac ctgctccgtt
     2521 cgatacctta taataccaaa aatggcaaat aagcccagcg ccattccaat ttgaagtttg
     2581 actgaatcca acaaaaagat cagtagaaaa atagtcacag caaaaagcgt aaacgtgaat
     2641 aaaaaatcgc gtcgaccact tttgcgataa taaaaatacc ggatgataat ccagcaaatc
     2701 aatatattga atccgaaacg gatcaacaat tgaattaatg catcatcctg aaaaataggg
     2761 atacccataa agtcggggcc ggaaaatcct tcggttccat attgctttgc aatggtagga
     2821 tcaaattctg ggaaatcaga ttgaatcata atcttttttt gtgatttttg agattttacg
     2881 taatttcttt ttaaagcgat tatattttac tgccgggttg actaaaacca tacccaaaca
     2941 atacttactc atacttccgg gcaaaacatt gagttcatag agatactccc tgaaatagga
     3001 cctgctaact ccatcctgct tcatttcaac gataaccagg tcgtcaacag atttggtcag
     3061 atcattggtg gtatttctga aaaccagccc catatcaagt gtcacgcgtt cagttttatt
     3121 tttatcaacg agcgtaaccc gctgaaaata gttttgaagt tgaggtttca gggattcggg
     3181 actatagggc acgcgtttgt gaataaacga attttctgcc tccgtaaaag ccattgattg
     3241 aaaatcatct ccatgaattt caatacgctt tttggaagtt cggcctttat tgttctttat
     3301 ttttatttca agaaaagcat gacctgaatt aagataagtc cgcgtcctga ttttataccg
     3361 attcaacttc ccgttatgat gcatggtgta cataatcaca tcctccgtat caaaataaat
     3421 a
//
LOCUS       DATDNM010000098         4363 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_866546, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000098 DATDNM010000000
VERSION     DATDNM010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4363
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_866546"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VI413_01725"
     CDS             <1..507
                     /locus_tag="VI413_01725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913365.1"
                     /translation="PKHGAVLLKVMGKHTKLRETFEAEYAWINNFNLRRNSRLVHRQG
                     RVIQTKNCSGGAKVGWLGKRPDNCLEFRDVYAYTSGTYRLTISYMCKRKSSVKICVNN
                     KDTVLRNLHSGSRSKVADITINVSINKGYNTICFSNPKEHLPDFDKIHLNLNDIPYLM
                     ANSSANTK"
     gene            complement(649..1602)
                     /locus_tag="VI413_01730"
     CDS             complement(649..1602)
                     /locus_tag="VI413_01730"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GSCFA domain-containing protein"
                     /protein_id="HEY6913366.1"
                     /translation="MFQTNVEIPPTDLTITYGDRIMTLGSCFAENIGGRMKQLYFDTE
                     INPFGVLYNPVSISNSIKMLIDNRPFTEDDLFQNRGLWQSFSHSSLFSATTAEKCLEA
                     INERFHAAADFLRETNILVITFGTAWVYEEAKGGRVVSNCHKLPASSFIRRRLTVDEI
                     VSDYSELVTRLKTLYPRLQIIFSVSPIRHWKDGAHGNNVSKSTLLLAIDALQNEFDNV
                     HYFPAYEIQLDELRDYRFYASDMLHPSDVAVDYIWQRFAETYFDEATNRTKKELEQLQ
                     GDLSHRPLFPDSEEYEKFRRSTEKRKQKLISKYPFLVKRMK"
     gene            complement(1701..1937)
                     /locus_tag="VI413_01735"
     CDS             complement(1701..1937)
                     /locus_tag="VI413_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913367.1"
                     /translation="MKKKIAILSLIAIFAAATSMTAQTATAKTQKATAQTEQKACCKD
                     KKAGECCKDKKADAKACTKTDKAACEKKAEVKKK"
     gene            complement(2155..3336)
                     /locus_tag="VI413_01740"
     CDS             complement(2155..3336)
                     /locus_tag="VI413_01740"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY6913368.1"
                     /translation="MITYKFKSIILFSALLLGLVSCGKATKKEAEGEEEVLPENVVEL
                     RDDQIKLAKIELGAVEMRSLSGTLKVNGVVSVAPQNLATVCMPMGGFVKSTSLTPGSP
                     VRKGQTLAVLENQEFIDIQQNYLETKNKLEYAEAEYKRHNELYKDDVYSQKNVQQVTT
                     EYRNLKAQLRALEQKLSLIGFNPARLTEDNISRSVALVSPISGYVKAVNVSIGKSVAA
                     SDVLFEIVNTDKLFLELTLFEKDADKVTNGQKIHFYINNESEEHEALIYQTGKSINDD
                     KTYKVYANVIGQCRNMMPGMYVNAVVETKNHETAALPSEAVVSFDDKDYIFVFDKNKD
                     EGGKKMTEYKMIEVQKGVSENGFTEVILPEDFNIRATKIVVKGAYNLLSAKKNAGEMS
                     C"
     gene            complement(3414..>4363)
                     /locus_tag="VI413_01745"
     CDS             complement(3414..>4363)
                     /locus_tag="VI413_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY6913369.1"
                     /translation="HKLAGATVKSSEWELKSTQLEIATQVKQVYHQLGYLYAKQKLFL
                     WQDSLYGGFLRAAELRLKTGETNRLEMITARSQGMEVRNQLKQLNADILIFNQKLGVL
                     INSSASVLAADTMLSRISFLPPTDSMIVATNPTLEFMQQQSEISKVETNLERSRMLPD
                     LSIGYFSQTMQGEQEINGVPRTFGKGDRFSGIQAGISIPLWFAPYTAKIKAAKQKSQQ
                     AQINAENYSKTLAGNYQSLIGEYSKYASNLDYYEKQAVPEADLIIDQATKSYRAGAID
                     YLDYIQSLSRALTIKLNYLDALNNYNQTIISIDYITGRL"
BASE COUNT         1140 a          948 c          858 g         1417 t
ORIGIN      
        1 ccaaagcatg gtgctgttct gttgaaagtt atgggtaaac atacgaagct gagggaaaca
       61 ttcgaagctg aatatgcctg gattaacaat ttcaacctgc ggcgaaacag caggttggtt
      121 caccggcaag gaagagttat acagactaaa aactgctcgg gtggtgcaaa ggttgggtgg
      181 ttaggaaagc ggccagacaa ttgtctggaa ttccgtgatg tttatgcata tacgtccgga
      241 acttatcgcc tcacaatttc atatatgtgt aaaagaaaaa gttcggtgaa aatatgtgta
      301 aataacaagg atacggtatt gagaaacctt cactcaggca gtcggtcaaa ggtggccgat
      361 ataaccatta acgtatcaat aaataaaggg tacaacacta tttgcttctc caatcccaaa
      421 gaacatttac ccgattttga taaaattcat cttaatctga atgacattcc ttatttgatg
      481 gctaattctt cggcgaacac taaataatgt aagagttggt agatccacag cctactacaa
      541 agggtttcca acaataccca caggtattgt tactatatgc tcccttctcc tcctcgttgc
      601 aaacgagggg ggcaattgtt ttatgttttt aaacgttata aacacatttc atttcatccg
      661 cttcaccaga aacggatact tacttatcaa tttctgcttc cgcttctctg tacttcttct
      721 gaatttttca tattcttccg aatcggggaa cagcgggcgg tgggataaat cgccctgcaa
      781 ttgctctaac tcttttttag ttcggttagt tgcctcgtcg aaataggttt ccgcgaaccg
      841 ttgccaaata taatccacgg ccacgtcaga cggatgcaac atatccgaag catagaagcg
      901 gtaatcgcgc aactcgtcca gctgaatttc gtaagccggg aaataatgca cattgtcgaa
      961 ttcattctgc agcgcatcaa tggccagcaa caatgtgctt ttgctcacat tgttcccgtg
     1021 cgcaccatct ttccagtggc gaatgggact gacgctgaaa ataatttgca accgcggata
     1081 taatgttttg agtcttgtta ccagttccga ataatcgcta acaatttcgt cgacagtaag
     1141 ccggcggcga ataaaactgc tggcaggcag cttgtggcaa ttggaaacca ctctcccacc
     1201 ctttgcttct tcgtaaaccc atgccgtgcc aaaagtaata accagaatgt tggtttcgcg
     1261 aagaaaatca gcagctgcat ggaagcgttc gttgatagct tcgaggcatt tttcggccgt
     1321 ggtagccgaa aacaaactgc tatgcgaaaa actctgccac aaaccccggt tctgaaacaa
     1381 atcatcttcc gtgaacggcc tgttatcaat cagcattttt atactgttgc ttatggaaac
     1441 tggattgtaa agcactccga aagggtttat ctcagtgtca aagtacaact gtttcatcct
     1501 ccctcctata ttttcggcaa aacaggagcc aagcgtcata atgcgatccc cataagttat
     1561 ggtcaggtcg gttggtggta tttcaacgtt ggtttggaac atagctggct tattttaaaa
     1621 acaaaaatag agcaaataat ctaatgcaca aaaaagcccc gaaataagtt tcagggctat
     1681 ttgaggaatt tgggttttta ttatttcttt tttacttctg cttttttctc gcaagctgct
     1741 ttatctgttt ttgtacaggc tttggcatct gcttttttgt ctttgcagca ttctcctgct
     1801 tttttatcct tgcaacatgc tttttgttct gtttgagcag ttgctttttg agttttagct
     1861 gttgcagttt gagctgtcat gcttgttgca gctgcaaaaa tcgcgataag cgataaaatg
     1921 gcaattttct ttttcatctt taaaattgat ttaatgttga tatttgtatt tattgttatt
     1981 tgttttggtt ttacaaagat agaaatctta aatgagttta caaagatttg gaatccaatt
     2041 cagtattatt aagattttat caggtatatt cattatttag tgtttagtgt ttagtgttta
     2101 gtgtttagtg tttagtgttt tgaaaatcaa ctatcaacta ttaactatag actatcaaca
     2161 actcatttct ccggcattct ttttagcgga cagcaagttg tacgcaccct ttacaacaat
     2221 ctttgttgcc cgaatgttga aatcctccgg aagaatcact tcggtaaagc cattctccga
     2281 cacccctttc tgtacttcaa tcatcttgta ttcagtcatt ttctttccgc cttcgtcttt
     2341 atttttgtcg aatacaaata tatagtcttt atcgtcgaag ctgacaaccg cttcagatgg
     2401 caaagctgct gtttcgtgat ttttggtttc gacaacagca ttcacataca ttccgggcat
     2461 catattccgg cattggccga taacgttggc atacacctta taggttttat catcgtttat
     2521 cgactttccg gtctgataaa tcaaggcttc atgttcttcc gactcattgt tgatataaaa
     2581 atggattttc tgtccgttgg tcactttatc ggcatctttt tcgaatagcg taagttcgag
     2641 gaataatttg tcggtattta caatttcgaa caatacatcc gaagctgcaa ccgacttgcc
     2701 aatgctgaca ttgacagctt ttacataccc cgaaatgggt gaaaccaatg ctaccgaacg
     2761 gctgatatta tcttcggtca gccttgccgg attaaagcct ataagcgaca gtttttgttc
     2821 caatgccctt agttgtgctt tcaggttccg gtattcagtt gtaacctgtt gtacgttttt
     2881 ctgcgaatac acatcgtctt tgtacaactc gttgtgccgt ttgtattcgg cttcggcata
     2941 ttccagtttg tttttcgttt ccaggtaatt ttgctgaata tcaataaact cctgattttc
     3001 gagcactgcc agcgtctgtc cttttctcac cggacttccc ggagtcagcg aagtgctttt
     3061 cacaaagcca cccataggca tgcaaactgt tgccaggttt tgcggtgcaa cagacactac
     3121 tccgttcacc ttaagcgttc cgctcaatga acgcatctcc acggcgccaa gttcaatttt
     3181 tgccagcttt atctggtcgt cgcgcagttc cactacgttc tcgggcaata cttcctcttc
     3241 gccttccgct tctttctttg tggcttttcc gcacgatact aaaccgagca ataaagccga
     3301 aaataaaatg attgatttga atttatatgt tatcataatg tttttataat gagttatgga
     3361 ttgggagtta taaactataa actataaact ataaactttg aactataaac tatctaaagt
     3421 cgtcctgtta tataatcaat tgaaattata gtctggttgt aattattcag cgcatccagg
     3481 taattcagct ttatagtcaa tgcccggctt aggctctgaa tataatccag gtaatcgata
     3541 gcacccgccc tgtagctttt tgttgcctgg tcgataatca aatcggcttc gggcacagct
     3601 tgtttctcgt aataatccag gttggaagca tatttgctgt attcgcctat caatgattga
     3661 taatttccgg ccagcgtttt cgaataattc tccgcattga tttgtgcctg ttggcttttc
     3721 tgtttcgctg cttttatctt ggccgtgtag ggtgcaaacc acagcggaat ggaaatacct
     3781 gcctgaatac cgctgaaacg atcgcctttg ccaaaagtac gggggacgcc gttgatttcc
     3841 tgttcaccct gcatagtctg gctgaaataa ccgatactta aatcgggtaa catacggctg
     3901 cgttccagat tcgtttccac tttcgaaatt tcagattgct gctgcataaa ttccaacgtt
     3961 ggatttgttg ctacaatcat gctgtcagtg ggtggcagaa aactaatacg actcaacatg
     4021 gtatcggctg ctaaaaccga tgccgaacta tttatcagca ctcccaattt ctggttgaaa
     4081 atcaaaatat cggcgttgag ttgtttcaac tggttgcgta cttccattcc ttgcgaacgt
     4141 gcggtaatca tttccaatcg gtttgtttcg cctgtcttca accttagctc ggccgcacgc
     4201 aagaaaccgc cgtataaact atcctgccac aaaaacaatt tttgtttggc atacaaatag
     4261 cctaattgat gatacacctg ctttacctgt gtggcaattt ccaattgggt agatttcagt
     4321 tcccactcac tgctctttac cgtagcaccc gccagtttat gtt
//
LOCUS       DATDNM010000099         2114 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1507635, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000099 DATDNM010000000
VERSION     DATDNM010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1507635"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..604)
                     /locus_tag="VI413_01750"
     CDS             complement(<1..604)
                     /locus_tag="VI413_01750"
                     /inference="COORDINATES: protein motif:HMM:NF013300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004560 - alpha-L-fucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEY6913370.1"
                     /translation="MKNLLFIFISLLLGAQSTFAQETATKEYTANYQKVMERTQWWRD
                     ARFGMFIHFGAYAVPARGEWVKSNERLTTEAYQKYVDEFNPKDFDAKAWAKTAKAAGM
                     KYAVLTAKHHDGFCMFDSKLTDYKLSKNFGGRDLVREFLDAFRAEGLKVGLYYSLIDW
                     HHPDYPNVGNHPQRDDKEYGKRTFNWDNYLKYMHGQVEELV"
     gene            complement(1075..1350)
                     /locus_tag="VI413_01755"
     CDS             complement(1075..1350)
                     /locus_tag="VI413_01755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913371.1"
                     /translation="MTAKEFVEEKLRFLISIFKGVHIKYKYLPGERSHLVEIIPAEFM
                     QGNEDYFKEEAQIIEEFDQLFPDESIDFISNDSDIRIEDVDLELSSR"
     gene            complement(1730..>2114)
                     /locus_tag="VI413_01760"
     CDS             complement(1730..>2114)
                     /locus_tag="VI413_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013610860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UTRA domain-containing protein"
                     /protein_id="HEY6913372.1"
                     /translation="EILTFFGLAPNTRVLALERLRGKENFPFVYFKSYFNPAVGLTGN
                     EDFSQPLYEILQQKLNVVASISYEEISAIKSSSFLRNKLNIESDDPVLFRKRFVYDQN
                     QRPIEYNLGYYRGDSFVFTIESERK"
BASE COUNT          596 a          413 c          394 g          711 t
ORIGIN      
        1 ttaccaattc ctcaacttgc ccgtgcatgt atttcaggta attatcccag ttaaaggtac
       61 gtttgccata ctctttgtca tcgcgttgcg gatggttgcc cacattagga taatcaggat
      121 gatgccagtc gatgagtgaa taatacaaac caactttcag cccttccgca cgaaaagcat
      181 ctaaaaattc acggaccaga tcacggccac cgaagttctt actgagttta tagtcagtaa
      241 gtttactgtc gaacatgcaa aagccgtcgt ggtgtttggc cgtgagaacg gcatatttca
      301 taccggcagc tttggcagtt tttgcccatg ctttcgcatc aaagtctttg ggattaaatt
      361 catctacata cttttggtag gcttcggtgg ttaaccgttc attcgatttg acccattcgc
      421 cacgagccgg aacagcatag gccccaaagt ggatgaacat tccaaaacgg gcatcgcgcc
      481 accactgggt gcgttccatt actttttggt agttggctgt gtactctttg gttgcagttt
      541 cctgtgcaaa ggtgctttgg gctcctaaaa gaagcgaaat aaaaataaat aacagatttt
      601 tcatgattaa cctatttagc ttagttggat tgtttttact attgaaatat gcctttttga
      661 caagccttaa tggacatgta ctttccattt ttcagaggga tagccaattt tcggctatcg
      721 ctttgtgctt ttattgtctg aaaagctggc aataagaaac acacaaaata aagctttccg
      781 atgatcttat gaaggtagtt catgttccag gtttagtatt tcagttcaat tgctgtatgc
      841 actgtaaaag taggcacttt tattaacatt tagtttcctt ctcttttgaa attgagcttc
      901 tttttataga aaatctggta aatcactttt cactttctga ggaatatcaa taattttaac
      961 ctttggcgaa gtaattcgag tcaacaaatt cgtaggcaaa ataattctat acaataagcc
     1021 tttccctaat gcaatatttt tttaatgcag ttggccagtg ctgattcatt attcttaccg
     1081 gctgctcaat tccaaatcga catcctcaat tctaatgtcc gagtcattcg atataaagtc
     1141 gatactttcg tctggaaaca attgatcaaa ttcttctatg atctgggcct cttccttgaa
     1201 ataatcctca ttgccctgca taaactcagc aggaataatt tcgaccaggt ggctcctttc
     1261 accgggtaaa tatttatact tgatatgtac acctttaaat atggatatca aaaaccttag
     1321 tttctcttct acaaattctt ttgctgtcat ggtttgaaat tttggttact gctatcttgt
     1381 cttttttatt ttatcaatag gtgatctctt tattagcctt gttatcacct gttgacttat
     1441 actgatttat tgccataatt gtttcttcag catatatttt catttgccgg gctccagata
     1501 acttctgcta ttatatgaag cattttttgt cataggtaat tcctgctact gaaaatttat
     1561 ggatatgcct gacaagaaca aagctgagca tccaggttat gaaaataaac agcacaccaa
     1621 agggagtgaa agtctttgac tttctttaaa tgaaccatta cgggatagcg catccgtaat
     1681 cggcacagcg gaaaacgtgg agggcgaaag aagggtaaat tttcagtaat tattttcttt
     1741 cactttcaat ggtaaataca aaactgtcgc ctctgtaata gcccaggttg tattcaatgg
     1801 gcctttgatt ttgatcgtaa acaaatcttt ttcgaaaaag tacagggtcg tccgattcaa
     1861 tattcaattt attgcgtaaa aaggaacttg attttatggc gctgatttct tcataagaaa
     1921 tacttgccac cacattaagc ttttgctgca ggatttcata taaaggttga ctgaaatctt
     1981 catttcctgt aagacctacg gccggattga aataagattt aaaatataca aaggggaagt
     2041 tttcttttcc tctgagcctt tcaagggcca gcacgcgggt gttgggagct aacccaaaaa
     2101 atgtaaggat ttca
//
LOCUS       DATDNM010000100         2801 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_12819, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000100 DATDNM010000000
VERSION     DATDNM010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2801
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12819"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..2665
                     /gene="gyrA"
                     /locus_tag="VI413_01765"
     CDS             53..2665
                     /gene="gyrA"
                     /locus_tag="VI413_01765"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009125911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEY6913373.1"
                     /translation="MIDQDRIIKVNIDEEMKSSYIDYSMSVIVSRALPDVRDGFKPVH
                     RRVLFGMNELGNNSDKPYKKSARIVGEVMGKYHPHGDSSIYGTLVRMAQHWSMRYPLV
                     DGQGNFGSIDGDSPAAMRYTEARLRKLSEDMLVDINKDTVDFQLNFDDTMKEPTVLPS
                     RIPNLLVNGSSGIAVGMATNMAPHNLTEAVNAITAYIENKDIEISELMHHIKAPDFPT
                     GGIIYGYAGVKDAFETGRGRIVVRSKVEIETDAQGREKIIVNEIPYQVNKVELIKSVV
                     ALVEDKKIEGISHINDESDREGMRIVIDIKRDANSNVVLNKLFKYTALQTSFSVNNIA
                     LVKGRPRMLNLKELIHYFVEHRHDVVIRRTQFELGEAEKRAHLLEGFMIILDNLDEAI
                     QIIRDSKTPEEARNRLMERFGLSDIQSRAIVEMRLRQLTGMEQDKLRAEYEEVLALIA
                     RLKDILANVELRMQIIKDELLEVKAKYGDERRTQIVYSSEEFNPEDFYSDDEMIITIS
                     HLGYIKRTPLTEFRAQNRGGVGSKGGSSRDEDFIEYIYPASMHNTMLFFTQKGKCYWL
                     KVYDIPEGTKISKGRAIQNMLNIDGDDKVNAFIRVKGLNDSEYINSHYLIFATKNGVI
                     KKTSLEAYSRPRQNGVNAITIREDDQVIQVRLTDGNSEVLMANRNGRAIRFHESKVRE
                     MGRTATGVRGMTLDEDAEDEVVGMICVNKEDKESIMVVSQQGYGKRTLLDEVDENGEL
                     VIENGEPVAVYRVTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRIK
                     VADFRIMGRATQGVRLINLEKRNDEIASVCKVLSEQEAEEVVEEAIEEVAETAESIEA
                     TKNPAIETEENIEE"
BASE COUNT          886 a          463 c          656 g          796 t
ORIGIN      
        1 aaatgtagta ctttagtgcg attttttaga tagtaataaa attaaaaaat agatgattga
       61 tcaagacaga attattaagg taaacattga cgaagaaatg aagtcttcgt acatcgatta
      121 ttccatgtcg gtgatagttt cgcgtgcatt acccgatgtt cgcgacggtt ttaaaccggt
      181 tcaccgtagg gtattgtttg gaatgaacga attgggaaat aactccgata agccctataa
      241 aaaatctgca agaattgttg gggaagtaat gggtaagtat cacccgcacg gtgactcgtc
      301 catttatggt accctggtcc gtatggctca acattggtct atgcgttatc cgttagtgga
      361 tgggcaagga aactttggtt ctatcgacgg tgacagccct gctgccatgc gttataccga
      421 ggcccgttta cgtaaattgt ctgaagatat gttggtggat atcaacaaag atacagttga
      481 ttttcaactg aactttgacg acaccatgaa ggaaccaacc gtgcttccaa gccgtattcc
      541 aaaccttttg gtgaatggtt catctggtat tgcagtaggt atggctacca atatggctcc
      601 tcacaacctt acagaggctg ttaatgctat aaccgcgtat atcgaaaata aagatattga
      661 aatttcagaa ttgatgcacc atatcaaggc accggatttt cctacaggtg gaattattta
      721 tgggtatgct ggtgtaaaag atgcttttga aacgggacgt ggacgtattg ttgttcgttc
      781 aaaagttgag attgaaacgg atgctcaggg gcgcgaaaaa atcattgtaa atgagattcc
      841 ttatcaagta aacaaagtgg aactgattaa atcggttgtt gctttggttg aagacaaaaa
      901 aatcgaaggt atcagtcata tcaacgatga gtccgaccgc gagggtatgc gtatcgtaat
      961 tgacatcaag cgcgatgcaa attcgaatgt tgtattgaat aaattgttta aatatacagc
     1021 tttacaaaca tcgttcagcg taaataatat cgctttggtg aaaggtcgtc cacgcatgtt
     1081 gaatctgaaa gaattgattc attatttcgt tgaacaccgt catgatgtag ttattcgccg
     1141 tacacaattc gaattgggtg aagctgaaaa gcgcgctcac ttgctggaag gttttatgat
     1201 tattctggat aacctggatg aagcaatcca gattattcgt gattcaaaaa cgcctgaaga
     1261 agcccgtaac cgtttgatgg agcgcttcgg attgtcagat attcaatccc gtgctattgt
     1321 tgaaatgcgt ttgcgccagc ttacaggcat ggagcaagat aaattgcgtg ccgaatacga
     1381 agaggtatta gcattaattg ctcggttgaa agacatattg gctaatgtgg aattgcgtat
     1441 gcaaatcatt aaagatgaat tgctcgaagt gaaagccaaa tatggcgatg aacgtcgcac
     1501 acagattgtt tattcttccg aagaattcaa tccagaagat ttctattcgg atgatgaaat
     1561 gattatcact atttctcacc tgggttatat taaacgcact ccgttgacag agtttagagc
     1621 tcaaaaccgc ggtggggttg gctcgaaggg tgggagttca cgcgacgaag acttcattga
     1681 atatatttat cctgcttcga tgcacaacac tatgttgttc ttcactcaaa aaggaaaatg
     1741 ttactggttg aaagtgtacg atattccgga aggaacaaaa atatcgaaag gccgtgctat
     1801 tcagaacatg ttgaatattg atggcgatga caaagtgaat gcatttattc gtgtgaaagg
     1861 tttgaatgat tcagaatata tcaattcgca ttatttgatt tttgcaacta agaatggtgt
     1921 aatcaagaaa acttcgttgg aagcatattc acgtccacgt caaaatggtg taaatgcgat
     1981 tactatccgc gaggatgatc aggtgataca agttcgttta acagacggaa attcagaagt
     2041 attgatggct aaccgaaatg gtagggcaat tcgtttccat gaatccaaag tgcgcgaaat
     2101 gggccgtacg gcaactggag tacgtggtat gacgctcgat gaggatgcag aggacgaagt
     2161 tgttggcatg atttgtgtaa acaaggagga caaggaaagc atcatggtag tttcacaaca
     2221 gggttatggt aaacgtactc tgcttgatga ggttgatgaa aatggtgaat tagttatcga
     2281 aaatggtgag ccggttgctg tttatcgtgt tactaaccgt ggtggaaaag gtgtaaaaac
     2341 catgaatatc accgaaaaaa caggtaaatt ggttactatc aaaagcgtta ctgatgagaa
     2401 cgacttgatg attatcaata aatcgggtat caccattcgt atcaaggtgg ctgactttag
     2461 aattatggga cgtgctactc agggagttcg tttaataaat cttgaaaaac gcaacgacga
     2521 aattgcctct gtatgtaaag tattatctga gcaggaggcc gaagaggtgg ttgaagaagc
     2581 tattgaggaa gtggcagaaa cagctgaatc tattgaggcg actaaaaatc ctgctatcga
     2641 aacagaagaa aacattgaag aataaatatc gagaaccgaa ccgattatta catcggttcg
     2701 gtttgaatta aacactaaaa acaaaaaatt actcgtcatg aaaaaaatta ttttatcact
     2761 tattttggcg ataagcttta cttctgcatt tgctcaaaag g
//
LOCUS       DATDNM010000101         2617 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_866788, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000101 DATDNM010000000
VERSION     DATDNM010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_866788"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            753..>2617
                     /locus_tag="VI413_01770"
     CDS             753..>2617
                     /locus_tag="VI413_01770"
                     /inference="COORDINATES: protein motif:HMM:NF037085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HEY6913374.1"
                     /translation="MRKILLLIIIQSIFGCFLKAQINTDTPNLSFESAALSTGWKLYL
                     GDYILNPADSSYTYSWTLKTPVQAGTRIMLLGNGPTVNDPVIACGGLYTNPKTLVARI
                     GDPTKTERRNTLNTAAAEKLEYSFKVTANTTLLSYKLAAVLKVPSGDTHGPLQLPSYK
                     MNITVKDAGGVSYILPCSSYDSKADSLNHSLTRNIVCNSSIGSPSTDYVYQKWISGNI
                     DLSNQIGKTVTITIINHDCLVKSGANIIGGSHDSYGYFWAETKKIELTSFSCENSDAT
                     IVAPLGFTSYIWTRSDGKPITIPDVTQPWIASIEKSLNLDGVVYSCAMDNTNSACGAI
                     TVSSTITPVKLHPNFTSVAIDAGKIKFTSTSTAEGDSITNYYWDFGDGVGYSNLQNPT
                     YTYSEFKPFNVKLTVTSSKGCSKTISYNVLPTKELTAKIFPPANLVYNGQTKDFTDSV
                     NIAGLQRNIDYYIRYTNRPGTPFYNSYSAPATVGDYTATFELSYLSLLKYFMTTVPST
                     NFTITKAPITVTISNVAKTYGESITLLREAFTQNMKPLYAGDKIYELELKCNGLSDTA
                     SVGTYTIKADSAIGLGVRNYEILFVNGTLTVNQKLLNIAAIDNSKIYGDQVNTTD"
BASE COUNT          881 a          464 c          436 g          836 t
ORIGIN      
        1 ttagacaatg gattttcctc aacaggaaaa tccattgtct ttttttattg tatttcgtct
       61 ttaattaaga ttataatcca caaaaaaaga cacaattaac aagctcgttt atagcaacca
      121 gcctattaac actgaaattt attatattaa aacagttgta tttttaaaac gtattgagta
      181 gatttgagaa ccaaactatg aaatacaaga tattagctca ttatgaaaca gtatattaca
      241 gcattttgta gtaaaatttc ttttgtttca atgcaattgt aggaataaat gtttttaaga
      301 aaaatcaaaa aaatatattc acatacttta acgtatcgat ttcaacgttt tttttcacaa
      361 ccaaccttat tcccagctgt tgtttcacta aaccaagatt atctaatttt ttgattttgt
      421 ttactatatc attttataaa aaaaatgata tcaatagctc gttatctatt ttcatcaaca
      481 ctgattaaat ttgaaagatc cattaatatt ttagcaataa acttttaaaa atacagaaaa
      541 atcttattca aaaaaaatta aatagttata gaaactttac ccgggaattt gagttaacaa
      601 aatccgctca tttatattat taatagagac aatgcacaac gctcaaacta ttggaaatta
      661 tcattctggt caaaattgca gatcattaag cgggaactat ccgaattatc aacgcatgga
      721 attcggtttc ttaaactttt aagtaattta gcatgagaaa aatactactc ttaattatta
      781 ttcaaagcat cttcggctgt tttctgaaag ctcaaattaa taccgacacg cccaatctta
      841 gttttgaatc tgcggcgtta agcaccggct ggaaacttta tttaggagat tacatattaa
      901 atcctgccga ttcttcatat acatacagtt ggacgttaaa aacgcctgtt caagccggta
      961 cgcgaatcat gcttttgggg aatgggccaa cagttaatga cccggttatt gcttgtggtg
     1021 gactttacac aaaccctaaa acattggtgg ctcgtattgg tgatcctact aaaacagaaa
     1081 gaagaaatac tctaaatacc gctgctgcgg aaaagttaga atattctttt aaagttaccg
     1141 ctaacaccac tttactatca tataaactgg ctgctgtgct aaaagttcct tctggtgata
     1201 ctcatggtcc tttgcagtta ccatcttaca aaatgaatat tactgtcaaa gatgctggtg
     1261 gggtttcgta tattttacca tgtagcagtt atgactctaa agctgatagt ttaaaccata
     1321 gtttaactcg taatattgtt tgtaatagtt caattggaag tccgtctacg gattatgttt
     1381 atcaaaagtg gatttccggg aatatcgatt tatcaaatca aattggaaaa acagttacta
     1441 taactattat caatcatgat tgcttggtga aaagtggtgc aaatattata ggtggcagtc
     1501 atgattctta tggctatttt tgggccgaaa caaagaaaat tgaactaaca tcgtttagtt
     1561 gtgaaaactc cgacgcaacc attgttgctc ctcttggttt cactagttat atatggaccc
     1621 gatcagacgg gaaaccaatt acaattcccg acgtaacaca accttggata gcttctatcg
     1681 aaaaatcgct gaatcttgac ggagttgttt attcatgtgc aatggataat acaaacagtg
     1741 cttgtggagc tattacggtt tcgagtacca ttactcctgt gaaattacat cctaatttta
     1801 cgagtgtggc tattgatgcc ggaaaaatca agtttacaag caccagtact gcagaaggcg
     1861 attctattac aaattattat tgggattttg gcgatggtgt tggctactct aatctacaaa
     1921 acccaactta cacctattca gaatttaaac cgttcaatgt aaagcttaca gttacttcca
     1981 gtaaaggttg tagtaaaaca atcagctata atgtattacc aaccaaagaa ctaacggcca
     2041 aaatttttcc tccggccaat ttagtttata acggtcaaac aaaagacttt actgattcgg
     2101 tcaatattgc cggactgcaa cggaacatag actattatat tcgttacacg aaccgccccg
     2161 gaacaccatt ttacaatagt tattcagcgc ctgcaacggt aggtgattat acggctactt
     2221 ttgagttgag ctacttgtcg ctgctcaaat actttatgac tacggttccc agtacaaact
     2281 tcacaataac aaaggctcct attacagtta ccatcagtaa tgtggcaaaa acctatggag
     2341 aatcgattac tctgcttcgt gaggcattta cccaaaatat gaaacctctg tatgcaggtg
     2401 ataaaattta cgaattggaa ctaaagtgta atgggttgag tgacacggct tcggtgggta
     2461 catatacaat taaagccgac tcagccatag gcctgggggt tagaaactat gagattcttt
     2521 ttgtaaatgg aacacttaca gtaaatcaga aattattaaa tatagcagcc attgataatt
     2581 ctaaaatata tggcgatcag gtaaatacta cagataa
//
LOCUS       DATDNM010000102         3007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1935437, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000102 DATDNM010000000
VERSION     DATDNM010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1935437"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..293
                     /locus_tag="VI413_01775"
     CDS             <1..293
                     /locus_tag="VI413_01775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913375.1"
                     /translation="DRNKMQFTHSAVQLQVCLHVSDSKTSSRVTTCITHHHFPYCPHG
                     LFAQQSIHPAVGARLEVVRHYTNYSDYHLSTFGFHSVYFRFPFIDNTYIIHI"
     gene            543..1352
                     /locus_tag="VI413_01780"
     CDS             543..1352
                     /locus_tag="VI413_01780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913376.1"
                     /translation="MAIVKGAFQMTGSIKGVSFYTVRGSDKVIMRTKGGASKDKIKSS
                     PKFEGLRKQQKEWSGCAKFGSMARYAFGGLHRLADYNLTPVLNGIGKNLMKLDTESDT
                     GRRSLKLSVYPQALEGFNFNRNYPLNTVLRVAPVAQLNREKLEASVSIPRINTDIDLL
                     NIQRLPFFRLIVAIGTISDMQYNAATNDYEPLVPELHGVSETRTGEWHSTQTILPEHV
                     MTAALEEREINALTENVTVLVSMAVEFGNVGFTGKPVEVKYAGCGKVMRVG"
     gene            1796..>3007
                     /locus_tag="VI413_01785"
     CDS             1796..>3007
                     /locus_tag="VI413_01785"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6913377.1"
                     /translation="MKTHKSYFIRNFKFEFRITLTYLIFGFLWILFSDKLLDLLEKDD
                     SLLTQFQTYKGAFFILVTSVFLYLLVKGHMQSIRLAESKLMESESHYKALFNNNHSVI
                     LLINPHTAGIEDANPAACKYYGWTHSELCRKSIYDFNIIDKEKVNARLQAVEANMQNH
                     FVSQHRLASGEIRDVEVFSSSIHVENKTLIYSSIHDITEQRIAESELRKLSKAVEQSP
                     VAICITNPDGIIEYANPRVAQLTGFSTDELINKNTRLFSSGEKPQQEYAELWQNIKSG
                     NIWSGEFHNKKKNGELYWESATISPIFDSTGQITHFLAIKEDITDRKRAEIALNKSEE
                     LLRKFASHLQNVREEEKVALAREIHDDLGQTLIALKIDMGLLKNKIVKFDTPNDPKEI
                     VDKFDNIVNLID"
BASE COUNT          990 a          612 c          622 g          783 t
ORIGIN      
        1 ctgaccggaa taaaatgcaa ttcactcaca gcgcagtaca acttcaagtt tgcttacatg
       61 taagtgatag taagacttcg agtcgtgtta ccacttgcat aacccaccat cacttcccct
      121 attgcccaca cgggttgttc gcgcagcaat ctatccatcc cgcagtcggt gcacgacttg
      181 aagtcgtacg ccactatacc aattactccg actaccacct atccacattc ggttttcatt
      241 cagtttactt tcgttttcca tttatagata atacatacat aatacatatc taatacatac
      301 taaacactta attaatactt atttataaaa gaattgtttt atctgtgttt ttattttgtt
      361 tttcagaaga tttttctaaa tttgcaaaca gaaagagaga agaaagaaaa cccttagccc
      421 ctaaagggga aggcgaacga ttagtgatta acgattagtt gtaaaaggca tattatcact
      481 gattgacgac aatttaacac taaccattta tcgttaatca ctaaccacct atcactaaaa
      541 aaatggcaat agtaaaagga gcatttcaaa tgacgggaag catcaaaggt gtttctttct
      601 atacggttcg tggaagcgac aaggtgataa tgcgcaccaa aggcggggct tccaaagaca
      661 aaatcaaaag ttcgccaaag tttgaagggt tgcgcaagca gcaaaaagaa tggagcggct
      721 gtgccaagtt cggttctatg gcccggtatg cttttggtgg cttgcatcgc ctggccgact
      781 ataacctcac gcccgtgttg aacggcatag gtaaaaacct gatgaagctg gataccgaat
      841 cggatacagg gcgtcgcagc ctgaaactgt cggtttaccc gcaggcactg gaaggcttta
      901 acttcaacag aaactatccg ctcaataccg tgttgcgggt ggcaccggtc gcccaactga
      961 accgcgaaaa gctagaggca agtgtaagca ttccgcgcat caacacggat atcgatttgc
     1021 tgaacataca acggttgccg ttcttccgac tgatagtggc tattggcaca atatcggaca
     1081 tgcaatacaa tgcggcgaca aacgattatg agcctctggt acctgagttg cacggtgtaa
     1141 gcgaaacacg gaccggcgag tggcactcca cacaaacgat attaccggaa catgtgatga
     1201 ctgctgcatt ggaagagcgg gaaataaatg cactgaccga aaatgtaacg gtgctggtaa
     1261 gcatggccgt ggaatttggc aatgtaggct ttacgggtaa accagtagaa gtaaaatatg
     1321 cgggatgcgg gaaagtaatg agggtgggat aacgttagct tagccatcaa tattcattcg
     1381 agtatagcgg tttctttttt caacaggccg accgtgtagt tgggcaaaag aaacaacatt
     1441 aattgtgtgc agtagcgcac agcaaataat ccggcgtctg cactgagaag agatgcaaaa
     1501 taatcgtcgg gcacattcca gaaacgaagc ggcaaacaac tctctctact cctgcagaag
     1561 gcgctcctct gcagcgaaaa taaaataaag atgattgagc ggagaggaaa ttgagaaatg
     1621 tttcaaaata aatgccatcc tgttaaatac atttcaaatg aatgtgtata tttgtaaccg
     1681 caactatatg aaaatctgct tcctattcgg ttcgttttgt tctcttacat tctagttaac
     1741 ggtcagtgta aaaaaagacc aatgaagtta catcgaagaa aacaattatt tacgcatgaa
     1801 aactcataaa tcttatttta tccgaaattt taaatttgaa tttagaatta cgctcaccta
     1861 tttgattttt gggtttctat ggattctgtt ttcagataaa ctgcttgatt tgctggagaa
     1921 agacgacagt ttgttgactc aatttcagac atacaaaggc gctttcttta ttttggtaac
     1981 ctccgtattc ttgtatttgc ttgtcaaagg ccatatgcaa agcataagac ttgctgaatc
     2041 taaacttatg gaaagcgaga gtcattacaa agcactgttc aataataatc attccgtaat
     2101 ccttcttata aatccacaca ccgccggaat tgaagatgca aacccggctg cctgcaagta
     2161 ctatgggtgg acacacagcg aattatgccg caaaagcatt tacgatttta atattataga
     2221 taaagaaaag gtaaatgcca gattgcaagc tgtagaagcc aacatgcaga atcattttgt
     2281 tagccaacat cgccttgcca gtggtgaaat aagagatgtg gaagtatttt caagttctat
     2341 acatgttgag aataaaaccc tgatttattc aagtattcat gatataaccg aacaacgcat
     2401 cgccgagtca gaactccgga aactttctaa agcagtagaa caaagccccg ttgccatatg
     2461 cattaccaac ccggatggaa taattgaata tgccaatccc agagttgctc agttgacagg
     2521 attttcgacc gatgaattga taaacaaaaa caccaggcta ttcagttcgg gtgaaaaacc
     2581 gcaacaggaa tacgctgaac tgtggcaaaa tataaaatcg ggaaatatat ggagcggcga
     2641 atttcacaac aagaaaaaaa acggtgaact ttactgggaa tcggctacca tttctcccat
     2701 tttcgattca acagggcaaa taacacattt tctggccata aaggaggata taaccgaccg
     2761 aaaacgagcc gaaattgcat tgaataaatc agaagaacta ctacggaaat ttgcttcaca
     2821 ccttcaaaac gtgcgggagg aagaaaaagt agctttagcc cgcgaaatac acgatgacct
     2881 tgggcaaact ttaatcgcac ttaaaattga tatgggcttg cttaaaaaca agatcgttaa
     2941 atttgacacc ccaaatgatc cgaaagagat agtagataaa tttgataata tagtaaacct
     3001 gatagac
//
LOCUS       DATDNM010000103         2009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1721713, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000103 DATDNM010000000
VERSION     DATDNM010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1721713"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..237)
                     /locus_tag="VI413_01790"
     CDS             complement(<1..237)
                     /locus_tag="VI413_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007834315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEY6913378.1"
                     /translation="MNLEQVAASIRNVPDFPKPGILFKDITTAMKDAEVLRFIADELY
                     EYYKDKGITKVVGVESRGFVLGSILAYKLGAGFVL"
     gene            complement(240..1196)
                     /locus_tag="VI413_01795"
     CDS             complement(240..1196)
                     /locus_tag="VI413_01795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine carbamoyltransferase"
                     /protein_id="HEY6913379.1"
                     /translation="MKTYTNVKDLGNLQEAIKEALEIKKNRYAYKHIGENKTLLMVFF
                     NSSLRTRLSTQKAGMNLGMNTMVLDINSGAWKLETERGVIMDGDKPEHILEAIPVMAS
                     YCDVIGVRAFAGLEDKSFDYQETIINQFIQYSGKPVFSMEAATGHPLQAFADLITIEE
                     YKKTARPKVVLTWAPHPKALPQAVPNSFADFMNEADVDFVITHPKGYELADEFVRGAR
                     VEYDQMKAFEGADFIYAKNWSAYQDPNYGKILSTDRDWTVSSRQMAVTNNAHFMHCLP
                     VRRNMIVTDDVIESPQSIVIPEAANREISAQVVIKRLLENIK"
     gene            complement(1201..>2009)
                     /locus_tag="VI413_01800"
     CDS             complement(1201..>2009)
                     /locus_tag="VI413_01800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009016776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PglZ domain-containing protein"
                     /protein_id="HEY6913380.1"
                     /translation="LMNEFYQFNEEELYCSMLPTATQYARNSIFSGLLPLQIQQMFPD
                     LWVEEEDEEGKNLNEKDLLQTMFQRYRKNYTFSYHKINDSNSCERLIDQLPRIDNNQL
                     NVCVLNFIDMLSHARTESKMMRELANDAEAYRSLTLSWFRHSPTYELFKAIAQRGYKV
                     IFTTDHGTIQVNNAIKVIGDRNTNVNLRYKVGKNLSYNKKEVFEITQPSKVGLPSPNV
                     SSAYIFAYNENFFAYPNNYNHYVSYYKNTFQHGGISLEEMLIPLIVMQPK"
BASE COUNT          588 a          430 c          342 g          649 t
ORIGIN      
        1 caaaacaaat ccggctccaa gtttatatgc cagaatactt cccaacacaa aaccacggct
       61 ttcaactcca actactttag ttattccttt atctttataa tattcatata gttcatcggc
      121 aataaacctc agcacttcag catctttcat tgctgtagta atatccttaa ataaaattcc
      181 tggcttggga aaatccggta cgttccgaat ggaagcggca acttgttcta aattcattgc
      241 tattttatat tttctaataa tcgtttaata acaacctgag cagaaatctc acggtttgca
      301 gcttccggta ttacaataga ttgcgggctt tcaattacgt catccgttac aatcatattt
      361 cgtcgtacag gcaaacaatg cataaaatga gcattatttg tcacggccat ttggcgactg
      421 cttaccgtcc aatcacgatc agtgctcaga attttaccat aattcggatc ctgatatgct
      481 gaccagtttt tggcataaat aaaatctgcg ccttcaaacg ctttcatttg atcgtattca
      541 acacgggcac cacgtacaaa ttcgtcagcc aattcatacc cttttgggtg tgtaatgaca
      601 aaatccacat cagcttcatt cataaagtct gcaaatgagt ttggcactgc ctgtggcaaa
      661 gctttcggat gcggagccca ggtcaaaaca acttttgggc gagctgtttt tttgtattct
      721 tcaatcgtaa tcaaatcggc aaaggcttgc aacggatgac ctgtagctgc ctccatactg
      781 aaaaccggtt tcccagaata ttgaataaac tggttgataa ttgtttcctg ataatcgaat
      841 gatttatctt ccaggcctgc aaatgcacga acaccaatca cgtcgcaata gcttgccata
      901 accggaatag cttccaggat atgttccggt ttgtcgccat ccattattac tccacgttca
      961 gtttccagtt tccaagcacc tgaattgata tcgagcacca tagtgttcat tcccaggttc
     1021 attcccgctt tttgagtgct caaacgtgta cgcaagcttg aattaaaaaa caccatcaac
     1081 agtgttttat tttcaccaat atgtttgtaa gcataacggt ttttcttgat ttccaatgcc
     1141 tcctttattg cttcctgcaa gttgccgagg tctttaacgt tagtataagt cttcatattt
     1201 ttatttcggt tgcattacaa ttaatggaat cagcatttct tccaatgaaa ttccaccatg
     1261 ttgaaatgtg tttttataat agcttacata gtgattataa ttattcggat aagcaaaaaa
     1321 gttctcgtta tatgcaaaaa tataagccga actcacattc ggactaggga gtcctacttt
     1381 agacggttgg gttatttcaa aaacctcttt cttattataa ctcagatttt taccaacctt
     1441 gtaacgaagg tttacattgg tatttctgtc gccaataact tttatcgcat tatttacctg
     1501 aatggttcca tggtctgtcg taaaaataac cttgtaacca cgctgagcaa tagctttgaa
     1561 aagttcgtat gttggtgaat gtctgaacca tgatagtgtc agcgaacgat aagcttcagc
     1621 atcgttagcc agttcacgca tcattttaga ttcggtccgg gcatgcgaaa gcatatcgat
     1681 gaaattcaac acacaaacat tcaactggtt attatcaatc cgaggcaatt gatcaatcaa
     1741 gcgctcacac gaattagaat cattaatttt atgatacgaa aatgtataat tcttccggta
     1801 acgttgaaac atagtttgca acaaatcctt ctcattgagg tttttgcctt cctcatcttc
     1861 ttcttcaacc cacaaatcag ggaacatctg ctgaatttgt agtggcaaaa gacctgaaaa
     1921 aattgaattc cgggcatatt gcgtagctgt tggaagcatg ctacaataaa gttcttcttc
     1981 gttgaattgg taaaattcat tcattaatt
//
LOCUS       DATDNM010000104         2232 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1188014, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000104 DATDNM010000000
VERSION     DATDNM010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1188014"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            144..1313
                     /locus_tag="VI413_01805"
     CDS             144..1313
                     /locus_tag="VI413_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008862465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase related protein"
                     /protein_id="HEY6913381.1"
                     /translation="MSDQRYNLRGVSASKEDVHNAIKNIDKGLFPKAFCKIIPDFLGN
                     DPDYCNIMHADGAGTKSSLAYVYWKETGDISVWKGISQDALIMNIDDLLCVGATDNIL
                     LSSTIGRNKNRIPGEVISAIINGTNELVEELAGMGVNIYPTGGETADVGDLVRTIIVD
                     STVTCRMKRSDVIDNANIKPGDVIVGLSSSGQATYEKEYNGGMGSNGLTSARHDVFAN
                     YLAVKYPESYNADIPQDLAYSGSCKLTDKVEGLGIDAGKLVLSPTRTYAPVVKKLLAE
                     LRPQIHGMVHCSGGAQTKILHFVENLKVVKNNLFPVPPLFQLIQKESRTDWKEMYKVF
                     NMGHRLEVYLPAEYAEKVIEISKSFNIDAQIVGYCEASDKTELLIESEFGRFEYR"
     gene            complement(1377..1952)
                     /locus_tag="VI413_01810"
     CDS             complement(1377..1952)
                     /locus_tag="VI413_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEY6913382.1"
                     /translation="MKFSLIQITSAFMVLFAIIDILGSIPIILNIKRKGQSVHALRAS
                     AVALLILIVFLFSGEAVLRLFNVDIQSFAVAGALIIFIFSIEMILDVEIFRNKGPEGG
                     SSIIPIAFPLIAGPGSFTTLLSLRAEYATENIIIALVLNMLFVFFVLRSTSRIEKLIG
                     EGGIYILRKFFGIILLAIAVKLFTTNIGSLL"
     gene            complement(1984..>2232)
                     /locus_tag="VI413_01815"
     CDS             complement(1984..>2232)
                     /locus_tag="VI413_01815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY6913383.1"
                     /translation="FDERFFMYPEDIDLTRRIHIKYRTVYFPNVSVIHHHAQSSYVNL
                     KMLYIHVTNMVKYFNKWGWIFDKERKIINKKTLEQLRM"
BASE COUNT          737 a          382 c          474 g          639 t
ORIGIN      
        1 gcaaaatcgg ggagatgaac aatgatgtga taatgggctg atgagataat ttgctaataa
       61 gataatatgt aaattgtagg gaagacaatt ttgtgataaa gaaatcaact aattaactga
      121 taaaccaatc aacaataata caaatgagtg accaacggta taatttaaga ggtgtgtctg
      181 cgtcgaaaga agatgtacac aatgcaataa aaaacattga taaaggactt ttccccaagg
      241 ctttttgtaa aataattccc gattttttgg gaaatgatcc tgattattgc aatattatgc
      301 atgctgacgg tgcgggaacc aaatcttcac tggcttatgt ttactggaaa gaaactggtg
      361 atatttcagt atggaaggga atttcgcaag atgcgttgat tatgaatatc gatgatttgc
      421 tgtgtgtggg tgctactgat aacatccttc tttcctcaac tattggccgg aataaaaacc
      481 gcattccggg agaagtgatt tcggccatta taaacggcac taacgagctg gttgaggaat
      541 tagccggcat gggagtaaat atttatccta cgggtggtga aacagctgat gtgggcgatt
      601 tagtccgtac cattattgtg gatagtacgg ttacatgccg tatgaaacgt tcggacgtga
      661 ttgataatgc aaatatcaaa ccgggtgatg tgattgtcgg cctatcctcg agcggacaag
      721 ccacatacga gaaagaatat aacggcggta tgggaagtaa cggtttaacc tctgcgcgcc
      781 acgacgtttt tgccaactac ctggctgtaa agtatcctga aagttataat gccgacatac
      841 ctcaggatct ggcttattcg ggttcatgca agctgacaga taaagttgaa ggattaggaa
      901 ttgatgcggg aaaattagtg ttgtcaccaa cacgtactta tgctccggta gtaaagaaac
      961 tgttggcaga gcttcgtccg caaattcatg gaatggttca ttgttcaggc ggtgcacaaa
     1021 caaagatttt gcattttgtt gaaaacctga aagtagtgaa aaataacctt ttcccggttc
     1081 cacccttgtt tcaactgatt caaaaagaat ccagaaccga ttggaaggaa atgtacaaag
     1141 tgttcaatat gggacaccga ttggaagtat acttgccagc tgaatatgca gaaaaggtaa
     1201 ttgaaatctc aaaatcattt aatatcgatg ctcaaattgt tggatattgc gaagcttctg
     1261 ataaaacaga gcttttgatt gaaagcgagt ttggtagatt tgaatatcga taaattgcat
     1321 aaaaaaaagt cttaggaaga ttatttcttt cgaagacttt tttctgtagt gtctgactaa
     1381 agtaatgaac caatgttggt tgtaaaaagc ttcactgcaa ttgccaacaa aatgatgccg
     1441 aagaattttc gcagaatgta aattcccccc tcaccaataa gcttctcaat acgagaagtt
     1501 gacctgagta cgaaaaacac aaaaagcata ttcagtacca gtgcgatgat aatattttcc
     1561 gtggcatatt ctgcccgcaa ggataggagg gtggtaaatg aacccgggcc tgcaattagt
     1621 ggaaaagcaa tggggataat agatgaaccg ccttcagggc ctttgttcct gaaaatttct
     1681 acatccaata tcatctcaat tgaaaaaatg aaaataatga gcgcccccgc aactgcaaat
     1741 gattgaatgt caacgttgaa taaccggagc acggcttcgc cggaaaacag gaaaacaatc
     1801 aggattaaaa gcgctacagc acttgctctt aatgcatgca cactttgtcc cttacgtttg
     1861 atattgagta taataggaat agatcctaaa atatcaataa ttgcaaagag aaccataaag
     1921 gcactcgtta tttgaatgag gctgaatttc ataacagaat ataagtatat ttatacaaag
     1981 atattacatt ctcagttgtt ccaatgtttt tttattgata atttttcttt ctttgtcaaa
     2041 aatccaaccc catttgttga agtacttcac catattggtt acgtggatat acagcatttt
     2101 cagattcaca tacgaacttt gggcatgatg atgaataaca ctgacatttg ggaaatatac
     2161 agtcctgtat ttgatatgaa ttcggcgtgt taaatctata tcttcaggat acataaagaa
     2221 gcgttcgtca aa
//
LOCUS       DATDNM010000105         2109 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1614936, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000105 DATDNM010000000
VERSION     DATDNM010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1614936"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1041)
                     /locus_tag="VI413_01820"
     CDS             complement(<1..1041)
                     /locus_tag="VI413_01820"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEY6913384.1"
                     /translation="MKRNSIGFVIIIATISVLGILLIQFFFLKYSYDLNEKKFHELTT
                     SALRSVANQINEYNSKAYGSKTISDACPVDQISNNYYVVNVNDVIDPNLLEHFLVQEF
                     RKRNLNVPFEYGIYDCNSKKMINGSSLKTDTTLVFNKPAKNCDTASCSDEQQMYDKHA
                     SKINKKAKACNLPTCEKYTYYFGVHFPNRSQFYNSRLIGWYFMTGILFFVVVFFGYAL
                     YIIIKQQRLSEIQKNFINNLTHEFKTPIASIDLAAKVLSGPKILEQPERLKEYVKIIG
                     QQNKRLSDHVEKLLQMATIEKTKLQLNLEPVELNSFISESILEFKNSQNGNEYLIHLE
                     STVAQAMIKADKL"
     gene            1247..>2109
                     /locus_tag="VI413_01825"
     CDS             1247..>2109
                     /locus_tag="VI413_01825"
                     /inference="COORDINATES: protein motif:HMM:NF019242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1573 domain-containing protein"
                     /protein_id="HEY6913385.1"
                     /translation="MKITLTLLMAILFCMPFVNKAQTAPAKSHITFEKLQHNFGTFKE
                     ELGPQSISFNFKNEGTVPLILNNVQASCGCTTPEWTREPVAPGAKGIIKVSYDPRNRP
                     GVFNKTIRVSSNADNADVVLTILGEVTPRARTVEEDYPNEIGPLRAKTNHIAFVQMKE
                     NQVKKDSTEVINMSDKPVQLSFKTPPSHLTAEIKPSKLAPKQKGYIVVSFDASKIKAY
                     GFVMHRIYLNVDGQDDYKNSIAVSTTIEEDFSKLSAADLANAPVVKYDAESFDFGDIK
                     PGSKVEHTFNL"
BASE COUNT          666 a          400 c          409 g          634 t
ORIGIN      
        1 aagcttgtcg gcctttatca tagcctgggc aacggtggat tccagatgga taagatattc
       61 attcccattc tgactgttct tgaattcaag aatagattct gaaataaaag agtttaattc
      121 aaccggctca aggtttaact gcagctttgt tttctcgatg gttgccattt gcagcagttt
      181 ctccacgtga tcggaaagcc ttttattctg ttgcccgatg attttcacat attcctttaa
      241 tcgctcgggc tgctccaata tctttggacc ggaaagcact tttgccgcca aatcgataga
      301 agcaattggc gttttgaatt cgtgggtcag gttgttaata aagttttttt gtatttcact
      361 gagtcgttgc tgtttgatga tgatatacaa ggcatatcca aagaaaacaa ctacaaaaaa
      421 caggatgccg gtcatgaaat accaccctat caggcgggaa ttataaaact gggaccggtt
      481 gggaaaatga accccgaaat aatacgtata cttctcgcag gtaggtaaat tgcaggcttt
      541 ggccttttta tttattttac tggcatgttt gtcatacatc tgttgttcat cgctgcaaga
      601 ggcagtatca caattctttg ccggtttgtt gaaaacaagg gtggtgtccg tttttaaaga
      661 actaccgttg atcatctttt ttgaattgca atcatagatg ccatattcga acgggacatt
      721 taaattgcgt tttctaaatt cctgaaccag gaagtgctcc agcagattgg gatctattac
      781 atcgttgaca ttgaccacat agtaattatt ggaaatctgg tcgacagggc aagcatccga
      841 gatggtcttg ctgccataag ctttgctgtt atattcatta atttgattgg caacactgcg
      901 taaggcgctg gtagttaatt catgaaactt tttctcattc agatcatacg aatatttcag
      961 gaagaaaaat tgaatcaaca gaattcccag aacagatatg gtggcaataa ttattacaaa
     1021 accgatcgaa tttctcttca taaaagctaa ggtcatttag gatatacgaa actacataaa
     1081 aaataaatgc atatctgcca ttaacagttc attaacaaaa ctttggacca attaagaatt
     1141 attattagaa acatttaata gatttgtaat ggtgaagaac aataaaataa atttgtctgt
     1201 atatttgggc aataatacga tcactaccat attaaaaaaa acttatatga aaattacact
     1261 gacgctatta atggcaattt tattttgtat gccatttgtt aacaaggcac aaacagcacc
     1321 tgccaaatca cacattacct ttgaaaaatt acagcacaac tttggtacct tcaaggaaga
     1381 attaggtccc cagagtattt cctttaattt taaaaacgaa ggaactgtgc cattgattct
     1441 taataatgtt caggcctcct gtggttgcac aacccctgaa tggacccgtg aacctgttgc
     1501 cccaggggca aaaggaatca taaaggtaag ttatgaccct agaaaccgtc ccggtgtatt
     1561 taataaaacc atccgggtta gttccaatgc tgataatgcc gatgtggtat tgacaatttt
     1621 gggagaagta actccaaggg cccgtacagt tgaagaggat tatcccaatg aaattggtcc
     1681 attgcgtgcc aagaccaacc acattgcttt tgtgcagatg aaagaaaacc aggtaaaaaa
     1741 agacagcacc gaggtgatta acatgtcaga caaacctgtt cagctaagtt ttaaaacccc
     1801 tccatcacat ttaacagctg aaatcaagcc ttcaaaactg gctcccaaac aaaagggata
     1861 catcgtggtg agttttgatg cctcaaagat taaagcctat ggctttgtga tgcaccgtat
     1921 ttatttgaat gttgatggtc aggatgacta taaaaattca attgctgtaa gtactaccat
     1981 tgaagaagac ttttcgaaat tatcagctgc cgatttggcc aatgctcccg ttgttaaata
     2041 tgatgccgaa tcctttgact ttggcgatat taaaccggga agcaaagtag agcatacttt
     2101 caaccttaa
//
LOCUS       DATDNM010000106         2684 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_120941, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000106 DATDNM010000000
VERSION     DATDNM010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120941"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(229..>2684)
                     /locus_tag="VI413_01830"
     CDS             complement(229..>2684)
                     /locus_tag="VI413_01830"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY6913386.1"
                     /translation="GGYIISTEGGSPTNHGYSLRLSGSKLQFSFGDGSGWPGITTSTD
                     IVPKTWFHAAVTYSGTQVTMYINGVQAATAIVATPMVASPDNVILGDSPTWTNRCFNG
                     IMSDFRFWNVVRTQTDIATDMTNSLTGTETGLVAGWKMNEGTGTSVADVKAVFPITIS
                     SNVAWYPATAITVSGTAISTDGGTTQMAATINGNATAARNITWAVSDPKIATINADGL
                     LSARKNGTVTVTATATDGSGVNGTVQVVVSNQIAPVKQVFVDFGLSTGTTPVGADSYG
                     NYWNNSSDPAITAAAVALVDNTNVASGFNLYVTAAFQANGPTAGGLTTPIASYLGEFA
                     IATATQDYFYATAGALKITGLNVNKGYRFKLFGSRDNTETRKTQFVFTGSNSVTTTEL
                     QTSGSNIGGTGINGNNSTILRSDLIYPTTAGEITIAVNKIAGSFAHLNIMKIEEFDKI
                     AVTGITVSGNAISNLGGTSQLTASVLPANATLKDVAWSVNNPNVATISSTGLLTANGN
                     GTVTATATSKDGSNVTGSVQIVVSNQPTPVKQALIDFGPATQSTLSKLTVSPDVTTNY
                     YWNNYTGDVVNSTATLVDKANASTGITITTLTAFSVNATPGAPGLESTNALALGDLSV
                     ANATLDYFFTQSTASMKFSGLNINRGYKFYAFGCRLSSTDTRVSQYTFTGAVTTVGTL
                     KTSEANLGGTGIHGNNSSLYITPIIYPDANGEIKLDMTSTQGGYAYLNDLKLEEYNMN
                     VATGLDKNSADIKVFPVVFNDKVSVKGATKMVELFNSTGVKVLSQPATSETSINTSNL
                     PKGVYVLVVDKKQSYKLIK"
BASE COUNT          779 a          533 c          497 g          875 t
ORIGIN      
        1 actaaaaaag aatagatttt tttcatcatt ttactatttc tttgtgttgt tcgaaaaaac
       61 taaatatgct ttattatttt aatatccaga ttgattgcag gcgaaagaaa attcggggca
      121 tgtataaaag ttacaataac caacaagata gcctcaaaaa tgaagctatc ttgttttgtt
      181 cataatatgt tcgttattgc taacaactca tatctataaa atcggttatt atttgatcag
      241 tttataactc tgttttttgt caacaaccaa tacataaact ccttttggaa gattggatgt
      301 attaattgaa gtttctgaag ttgcaggttg acttaatact ttcacaccag ttgagttgaa
      361 taattccacc attttagttg caccttttac agacacttta tcattaaata ctacagggaa
      421 tacttttata tcagctgagt ttttgtctaa tccggtagct acattcatat tgtattcttc
      481 cagcttcaaa tcattcagat atgcataacc gccttgcgta ctggtcatat caagtttaat
      541 ttcgccatta gcatccggat aaattatcgg agtaatatac aagctgctgt tattcccatg
      601 aataccggtt ccacctaagt ttgcttccga tgttttaagt gttccaacgg ttgttacagc
      661 tccggtgaaa gtatattgag atacacgggt atctgttgat gacaaccggc aaccaaatgc
      721 atagaattta taaccccggt taatattcaa ccctgaaaat ttcatacttg ctgtactttg
      781 agtgaagaaa tagtctaaag ttgcatttgc tacagataaa tcgcctaacg ccaatgcatt
      841 agttgattcc agaccaggag ctcccggggt agcatttaca gagaaagctg tcaaagtggt
      901 tatagttatg cctgtagaag catttgcttt atcaactaac gttgcagttg agtttacaac
      961 atcgcccgta taattattcc agtaataatt agtagttaca tcggggctta ctgtaagttt
     1021 actcaaagtc gattgagtgg caggtccaaa atcaattaat gcttgtttta ctggagttgg
     1081 ttgattgctc accactattt gtacacttcc ggttacattc gacccatctt tgctggtggc
     1141 agttgcagtt acagtcccat tgccattggc agtaagtaac cctgttgaac tgattgtggc
     1201 aacatttgga ttgtttacac tccatgctac atctttaagc gttgcatttg ctggcaatac
     1261 gcttgcagtt agttgcgaag ttccgcctaa atttgaaata gcattacctg aaacagttat
     1321 tcctgtcaca gcaattttat caaactcctc tatcttcatg atattaaggt gagcaaaaga
     1381 tcctgctatt ttattaactg caatagttat ttcgcctgca gtagttgggt aaataagatc
     1441 tgatcttaaa attgtgctat tattgccgtt tataccagta ccacctatat ttgatcctga
     1501 agtttgaagt tctgttgtag taacagaatt tgaacctgtg aaaacaaact gtgttttacg
     1561 agtttcagta ttatcgcggc ttccaaaaag tttaaaccga tatcctttat ttacattaag
     1621 tccggtaatt ttcaacgcac ctgctgtagc ataaaaataa tcctgagtag cagttgcaat
     1681 ggcaaactcg cccaaataag atgcaattgg agtcgttaac cctccagcgg tgggaccatt
     1741 tgcttgaaaa gctgcagtta catataagtt aaagcctgaa gctacatttg tattatcaac
     1801 caatgccact gcagctgctg taatagctgg atctgacgaa ttattccagt aattgccata
     1861 agaatctgca ccaacaggag tagttccggt gctaagtcca aaatctacga acacttgttt
     1921 tacgggggct atttgattgc tgacaactac ctggacagtt ccatttacac ctgaaccatc
     1981 cgtggctgta gctgttacag ttactgttcc attttttctg gccgatagta atccatccgc
     2041 atttatggtt gcaattttgg ggtcacttac tgcccatgtt atatttcttg cagcagttgc
     2101 atttccattt atggtagcag ccatttgagt agttcctcca tctgttgaaa tagcagtacc
     2161 tgaaacagtg attgcggttg caggatacca ggcaacattg gacgatatag taattggaaa
     2221 aacagctttt acatcggcaa cagaagttcc ggttccttca ttcattttcc agccggcaac
     2281 aagtcctgtt tcagtgccgg taagcgaatt tgtcatgtca gttgcaatat cagtctgtgt
     2341 acggacaaca ttccaaaaac gaaaatcaga cataattcca ttgaaacatc tatttgtcca
     2401 tgtagggcta tcacccaaaa taacattatc aggagatgct accattggtg ttgcaactat
     2461 agctgttgca gcttgtacac catttatata cattgtcact tgtgttccgg aataagttac
     2521 agcagcatga aaccatgttt ttggaacaat gtctgttgaa gtggttatgc caggccatcc
     2581 actcccatct ccaaatgaaa attgaagttt gctcccagat aaacgtaagg aatagccgtg
     2641 attagtcggg cttccacctt cggtagaaat aatgtatcca cctc
//
LOCUS       DATDNM010000107         2009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_13825, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000107 DATDNM010000000
VERSION     DATDNM010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13825"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VI413_01835"
     CDS             complement(<1..306)
                     /locus_tag="VI413_01835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="solute carrier family 23 protein"
                     /protein_id="HEY6913387.1"
                     /translation="MARRTIGIHEKLPILESLPLSLQHLTAMFGATILVPILLGVDPA
                     IALLMNGLGTLLYSWITKGGIPAYLGSSFAFIAPVILISTSYGGFSHAQSGFIFFGLF
                     "
     gene            complement(374..1384)
                     /locus_tag="VI413_01840"
     CDS             complement(374..1384)
                     /locus_tag="VI413_01840"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY6913388.1"
                     /translation="MSIFQNCNKRQFKINRIGFAILAIISLTYISCTDNYLKPHPYFP
                     QANDFLRHADTASLHFFVLSDWGFNGGFSQKDVAAEMAQISKLVGISFILTCGDNFQY
                     TGVDSVNDPLWKDNYENIYNDSALHIPWYPSLGNHDYYGNPDAEIAYSSISKYWEMPS
                     RYYTFTRKINTRGNARFIVLDTQGLINSYQGLSDTTLLDSIPQYSWVKKLLSESTEKW
                     IFVTGHHPVFSASSFHGDTYEMKKLIKPLFDQYKVDFYICGHDHDFEHTKDKANYTDY
                     IVTGTGGYVRPEGRNERTMYSMSAPGFSYLSVGADTVKLYFITAEGKIGYSLKKTKST
                     LN"
     gene            complement(1421..1942)
                     /locus_tag="VI413_01845"
     CDS             complement(1421..1942)
                     /locus_tag="VI413_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HEY6913389.1"
                     /translation="MKRLPADFYKQDAVTVAEKLLGKILVRGCEDGTEARYRITETEA
                     YLGEEDKACHASKGRTPRTEVMFSVGGKVYVYLIYGMYWMLNVVTGAENHPQAVLIRG
                     IDNIIGSGKVGRELRLDKSFYAEDLLDSKRIWIEDAPDVAEFKTAPRIGIDYAGDEWR
                     DKPWRFVLASFDK"
BASE COUNT          637 a          431 c          334 g          607 t
ORIGIN      
        1 aaacaatccg aaaaagataa acccagattg tgcatggcta aacccaccat acgatgtact
       61 aataagaatg accggagcaa taaaagcaaa actggaaccc aaatacgcgg gaattcctcc
      121 ttttgtaatc caggaataaa gtaacgttcc aagtccgttc atcagcaatg caatggccgg
      181 atcaactcct aataaaatag gaacgagaat tgttgcccca aacatggctg taagatgttg
      241 aaggctgaga ggcaggctct ctaaaatcgg tagtttttca tgaattccaa tggttcgtct
      301 tgccataatt ctgtgtttaa aagtaaatga ttagttttta ttatatatga tattttcgag
      361 atgatattga gtttcaattc agcgttgatt tagtcttttt caaactatat cctattttcc
      421 cttctgctgt tataaagtac aacttcacag tgtcggcgcc aacagacaaa tagctaaatc
      481 cgggagcaga catagaatac attgttcgtt catttcgccc ttccggcctt acgtaaccgc
      541 cggttccagt aacaatataa tcagtataat tcgctttatc ttttgtatgt tcaaaatcat
      601 gatcatgccc acagatataa aaatcaactt tatattgatc aaaaagaggt ttaatgagtt
      661 ttttcatttc gtaagtgtcg ccatggaaag aacttgcaga aaacactgga tgatgtcctg
      721 taacaaaaat ccacttctct gttgattctg acaatagttt tttaacccaa gaatactgag
      781 gaatcgaatc cagcagagtt gtgtcagata aaccttgata tgaattaatt aatccctgag
      841 tgtccaacac tataaagcgt gcattgcccc tcgtattaat ttttcgtgta aaagtataat
      901 agcgggacgg catttcccaa tatttactga ttgaggaata tgcaatctca gcatcaggat
      961 tgccataata atcgtgattg ccaagagaag gataccaggg gatatgcaat gcgctatcat
     1021 tgtatatgtt ctcgtaatta tccttccata gcggatcatt cacactatct actcctgtgt
     1081 attgaaaatt atctccacag gtaagaataa aacttatgcc aacaagtttc gaaatctgag
     1141 ccatttcggc agccacatct ttctgactaa aaccgccatt aaagccccaa tcgctcaaca
     1201 caaagaaatg caaggaagca gtatcggcat gccttaagaa atcatttgcc tggggaaaat
     1261 acggatgagg ttttagataa ttatccgtac aagatatata cgtcaatgaa ataattgcca
     1321 aaatcgcaaa tccgatccgg tttattttga attgtcgttt attgcaattt tggaaaatac
     1381 tcatgtatga atgtttcagc aataatttaa aatgtaaaat ttatttatca aaagaagcta
     1441 gaacgaacct ccacggctta tcacgccatt catcaccagc gtaatcaatt ccaattcgtg
     1501 gggctgtttt aaattcagcc acatccggcg catcttcaat ccaaatccgt ttggaatcaa
     1561 gcaaatcttc cgcataaaaa ctcttatcca gcctgagttc ccggcccact ttaccagacc
     1621 ctattatatt atcaattcca cgaattaaaa ccgcttgcgg atgattttcg gctccagtta
     1681 ctacattcaa catccaatac ataccatata taagataaac ataaaccttt ccacccactg
     1741 aaaacattac ttcagtccgg ggcgtgcgtc ctttgcttgc atgacaagct ttatcctctt
     1801 cacccagata agcttcggtt tctgttattc gatatctcgc ttcagttcca tcttcgcagc
     1861 cccttacaag tatctttcct aaaagttttt cggctactgt aactgcatct tgtttataga
     1921 aatcggcagg caatcttttc atgctgcaaa cttacttatt ttccctcaaa attacagttt
     1981 atttgccccg aaaaagctgt ttaaaaaaa
//
LOCUS       DATDNM010000108         4224 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1295506, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000108 DATDNM010000000
VERSION     DATDNM010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4224
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1295506"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..607
                     /locus_tag="VI413_01850"
     CDS             <1..607
                     /locus_tag="VI413_01850"
                     /EC_number="1.1.1.69"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013618397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="gluconate 5-dehydrogenase"
                     /protein_id="HEY6913390.1"
                     /translation="ADVTNEDQINAIVAQIATEVGEIDILVNNAGIIKRIPMHEMSAA
                     EFRQVIDIDLNGPFICAKAVIPSMMKRGAGKIINICSMMSELGRETVSAYAAAKGGLK
                     MLTKNIASEYGEFNIQCNGLGPGYIATPQTAPLRETQADGSRHPFDQFIIAKTPAARW
                     GNAEDLVGPAVFLASPASDFVNGHVLYVDGGILAYIGKQPK"
     gene            643..1773
                     /locus_tag="VI413_01855"
     CDS             643..1773
                     /locus_tag="VI413_01855"
                     /inference="COORDINATES: protein motif:HMM:NF027479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4861 family protein"
                     /protein_id="HEY6913391.1"
                     /translation="MKKIGFSILASLLLVSGIFAQRSIIVTNNTGMNRNAEMVEAKAC
                     CKKSCIITKSVVLKNEKGQEVPYQLVYNNKKEVQSIIFQADVKANSSAVYMLTEGKPA
                     AVKAKTFGRFVPERKDDFAWENDFAGYRMYGPALAKENPSNGVDYWAKCTEELIVDEF
                     YNGELKQGLSYHRNRGHGMDFYKVAHTLGCGGIAPYAADSLWVGNHFDSYKVLENGPL
                     RTVFALTYDSVKVGNDFYKQTITITANAGSLLNKAVVSFTGKARKMQLAAGIFLHDGK
                     GDLKLNVANGTVAYAEEAVSEFKEPSGRNYVGVLVPSKVSDSKKKNAHAILLSDYKVG
                     ACFTYYFGGGWNNWKFPTDADWFKAVNDFTAKIKSPLKVKMK"
     gene            1933..2619
                     /gene="tsaB"
                     /locus_tag="VI413_01860"
     CDS             1933..2619
                     /gene="tsaB"
                     /locus_tag="VI413_01860"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008770767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEY6913392.1"
                     /translation="MVILHIETSTNVCSVALSENGTSLFTKSNGDGMNHAALLSVFIA
                     EALEVLKPQSKKLDAVAVSSGPGSYTGLRIGVSTAKGLCYGYGIPLIAVSTLEILTAE
                     ALKFVEKGGDALFCPMIDARRMEVYAAFYNEKCEMKREISADIIDSDSYEEMLAAHPV
                     YFFGNGAEKCKTTLTHSNARFLDNLVPLAENMIAFAEKAYSEGKFVDVAYFEPFYLKE
                     FQTTTPKKNL"
     gene            complement(2626..4143)
                     /locus_tag="VI413_01865"
     CDS             complement(2626..4143)
                     /locus_tag="VI413_01865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913393.1"
                     /translation="MVLPECLKKNIDSLIAAVLGFIVVQLFTHPGGIGISPDSIAYTG
                     TARNLIAGKGFTEFSGGAMVSFPLLYPFFLAAIMFVTQTDIIVVAPYLNGLLFAVLIF
                     LSGTIIEHFKYKTNIYKRILLAIMICSPSLIEIYTMLWSETLFILLVVIFIYFFKHYF
                     RTHSFKSLLIAAFIVALAFDTRYAGITLIGTGCLLIFFDKNLNWTNKFRHIFVFGCGG
                     SSLACINLIRNAVVGGMATGMRQKGITPFAKNVGYSGNVFSDWFTFQFEGQLFFEILL
                     VAVMVLFLIFFLKNFRHWKAYYTFENVAVSFFIVYVLFIVISSTLSRYETINNRLLSP
                     AFIPLLWISTCQIPKWRKQVTHKQLSWIFFAITLGIAFVIIGSYIITNREKLFYVRVS
                     GIHGYNEDAWRNSRIVSYLQHHNEYFDKDSTIYSNHSQAVYFLTNHLVSTLPERVYKE
                     DVKEFKAESPIVLIWFYNDPNPDLLTLKEIHKYKKIKLVKSFSDGAIFILTNEVN"
BASE COUNT         1370 a          743 c          853 g         1258 t
ORIGIN      
        1 tgctgacgta actaacgaag atcaaatcaa tgctattgtt gctcagattg caacagaagt
       61 tggcgaaatt gatattctgg taaataacgc aggtattatc aagcgtattc caatgcacga
      121 aatgagtgct gccgaattcc gtcaggtaat tgacattgac ctgaatggtc ctttcatttg
      181 tgctaaagcg gttattccaa gcatgatgaa aagaggtgcc ggcaaaatta tcaatatttg
      241 ttcaatgatg agcgaacttg gccgcgaaac tgtatcggct tatgctgcag ctaaaggcgg
      301 tttgaaaatg ttgactaaaa acatagcttc tgaatatggt gagttcaata ttcaatgtaa
      361 tggcttagga ccgggttata ttgccactcc tcagacagct ccattgcgcg aaactcaggc
      421 tgatggttca cgtcacccat tcgaccaatt tattatcgct aaaactcctg cagctcgttg
      481 gggaaatgct gaagaccttg ttgggccggc tgtattcctt gcttcacctg cttctgactt
      541 cgtaaacgga cacgttcttt atgttgacgg tggcattttg gcttatatcg gaaagcaacc
      601 taaataattt agcatttatt catttacaat ttactaatta gaatgaaaaa aataggattt
      661 tcaattttag cttcactcct actcgtttcg ggtatttttg cgcaacgctc tatcattgtg
      721 acaaacaaca cgggaatgaa tcggaatgct gagatggttg aggcaaaagc ctgctgcaaa
      781 aaaagttgta tcatcaccaa atcagttgta ctcaaaaatg agaaaggaca ggaagttcct
      841 tatcagttgg tttacaacaa taagaaagaa gtacaatcga ttatttttca ggcagatgta
      901 aaagcaaaca gttctgcagt ttatatgttg actgaaggaa aaccggcagc agtaaaagcg
      961 aaaacttttg gccgttttgt accggaacgt aaagatgact ttgcctggga aaatgatttt
     1021 gcaggatatc gcatgtacgg tccggctctg gctaaagaaa atccgagcaa cggagtggat
     1081 tactgggcaa aatgtactga ggaactcatt gtagatgaat tttataacgg tgaattgaag
     1141 cagggacttt cttaccacag aaaccgtggc catggaatgg atttttataa agtagctcat
     1201 acactgggat gtggtggaat tgctccttat gctgcagatt cattgtgggt tggaaatcat
     1261 ttcgacagct ataaagttct tgaaaatggt ccgttacgca cggtttttgc cctgacttat
     1321 gattcggtaa aggttggcaa cgatttctat aaacaaacta ttacaattac tgccaatgca
     1381 ggttcacttc taaacaaagc agtggttagc ttcaccggaa aagccaggaa aatgcaattg
     1441 gcagcaggaa tttttctgca tgacgggaaa ggcgatctga aattaaatgt tgcgaatggc
     1501 actgtagctt atgctgaaga ggctgtttcg gaattcaaag aaccttcagg acgtaattat
     1561 gtgggtgttt tggttccctc aaaagtaagc gatagcaaga aaaagaatgc acatgcaatt
     1621 ttattgtccg actacaaagt tggtgcttgt ttcacttatt attttggtgg tggctggaat
     1681 aactggaaat ttccaactga tgcagattgg tttaaggcag tgaatgattt tactgcaaaa
     1741 atcaagagtc cgttgaaagt aaaaatgaag taagtttcaa ttataatttc tgtaaatccc
     1801 tgttttcgtt tgaaagcagg gatttgtttt ttacattcgg caaaaatgtt taattttgta
     1861 cactttcaaa ttctaatcac attctgtaaa ttcgattggg tcaaacacag atttaaaata
     1921 gtaaattaat aaatggttat tctccacata gaaacttcta ccaatgtttg ctcagtagct
     1981 ttgagtgaaa acggaacctc cctttttact aaatcaaatg gcgatggtat gaatcatgct
     2041 gcgttgttga gtgtattcat tgcagaagcg ttggaagtgc ttaaaccaca aagtaaaaaa
     2101 cttgatgcag tggctgtaag cagcggcccg ggatcgtaca ccggtttgcg aataggcgtt
     2161 tctacagcta aagggttgtg ctatggatat ggaattcctc ttattgctgt cagcacgtta
     2221 gaaatattga cggctgaagc tttgaaattt gttgaaaaag gaggagatgc tttattttgc
     2281 ccgatgattg atgcccgtcg aatggaagta tatgctgctt tctacaatga aaaatgtgaa
     2341 atgaaacggg aaatttctgc tgacattatt gattctgatt cttatgaaga aatgcttgct
     2401 gctcatccgg tttatttctt tggaaatggt gctgaaaaat gtaaaactac cctcacccac
     2461 tctaatgcac gttttttaga taatctggtt cctttggctg aaaatatgat tgcctttgca
     2521 gaaaaggcat attctgaagg taaatttgtt gatgtggctt attttgagcc attttatctg
     2581 aaggaatttc agactaccac gccaaagaaa aatttgtaac gataattagt tcacttcatt
     2641 tgtcaatata aaaatggcac cgtcagaaaa tgatttgaca agttttatct ttttatattt
     2701 gtgtatttct ttcaaagtta gtaaatctgg attcggatca ttgtaaaacc aaataaggac
     2761 aataggactt tcggccttga attccttaac atcctcttta tagactcttt cgggtaatgt
     2821 acttactaaa tgattagtaa gaaaataaac tgcctgactg tgattggaat aaatggtaga
     2881 atctttatca aaatactcat tgtgatgttg cagataactt acaatacgtg aatttctcca
     2941 ggcatcttcg ttatagccat gtattcctga taccctaaca taaaataatt tttctctgtt
     3001 cgtaattata tagctaccaa taatcacaaa agcaattcca agtgtaatag caaaaaatat
     3061 ccagctcagt tgcttgtgag taacttgctt tctccatttg ggaatctgac atgtggaaat
     3121 ccatagaaga ggaataaatg ctggagacaa caaacggttg ttgattgttt cgtaacgcga
     3181 taaagttgaa gaaattacga taaaaagaac ataaacgata aaaaaactta ctgccacatt
     3241 ttcgaatgta taataagctt tccagtgccg gaaattcttc aaaaagaaaa taagaaacaa
     3301 aaccatgacg gcaaccagta gaatctcgaa aaacagttgt ccttcaaatt gaaatgtaaa
     3361 ccaatcagaa aaaacattgc ctgaatatcc tacatttttt gcgaatggtg taatgccttt
     3421 ctggcgcatg ccggttgcca ttcctcccac aactgcattt ctgatcagat ttatgcatgc
     3481 aagagatgaa cctccacagc cgaacacgaa aatatgcctg aatttattgg tccaattcag
     3541 gtttttgtca aagaatataa gcaaacaacc agttccgata agagtaatcc cggcgtaacg
     3601 tgtatcgaaa gccagtgcaa caataaaggc ggcaattaga agcgatttaa aactgtgtgt
     3661 tcgaaaataa tgcttaaaaa agtatatgaa aattacgacc agaagtatga acaacgtttc
     3721 agaccaaagc atggtgtaaa tttcgatgag cgaagggctg caaatcatta tggccaacaa
     3781 gatacgttta taaatattgg tcttatattt aaagtgctca ataatagttc cgctcagaaa
     3841 aataagtacc gcaaacaaca atccgtttaa ataaggcgct accacaatta tatcagtttg
     3901 tgtcacgaac ataattgcag ccagaaaaaa cgggtataaa agaggaaaag aaaccattgc
     3961 tccacccgag aattcagtaa atcccttccc ggcaattaaa tttcgggcag tacctgtgta
     4021 ggctattgaa tctggagaaa ttccaattcc accaggatgg gtaaatagtt ggactacaat
     4081 aaaccccaga acagcagcaa taagtgaatc aatattcttt tttaaacact ccggaagaac
     4141 cacgtatcta ttattttaag cgttataaaa atgatgactc tgtttataaa tcaaactctt
     4201 gccccggttc tggtatttca atgt
//
LOCUS       DATDNM010000109         2334 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1402682, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000109 DATDNM010000000
VERSION     DATDNM010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1402682"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VI413_01870"
     CDS             <1..470
                     /locus_tag="VI413_01870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913394.1"
                     /translation="DNQTTINIVNEIMTDPRSSDELKAEARYNRAKAYIALGQSSQAT
                     SDLKLLATETRTANGAESKYLLANLYFEQGKLADTEKEVLDFAKKNTPHQFWLARSFV
                     LLADVYIKQNNDFQAKQYLLSLQKNYTTADVIQTLITDRLNAISEREKNTIIN"
     gene            515..2284
                     /locus_tag="VI413_01875"
     CDS             515..2284
                     /locus_tag="VI413_01875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913395.1"
                     /translation="MKTLKYILPVLLFATGSTTQLLAEDSIVNRNITVEREFKPVIKD
                     AGKINSTPQTLEPKVEKVAAKFSDFNYPLNADYNIHTLPAAELQREKRPDAKGGFARL
                     GVGNNINTLADFAYPLIKSKETKLDFSLNHLGTFNYQAHSTTKAALSFDQYFSTFNLY
                     AGLGGGHEYLKYYGYNFNGKNSVIDLDTLAKTNGSDSYLEQNLVSINRTAHNFTVNEL
                     ANDSNSNTFWRFNAFAGVRSLPLSKGIRYQAEIQYKVFDARNGLTENLLHTKAGFNGQ
                     SEKNRMGLDLDMYNLSYKSSNPAVLNYLDAYTIFAMNPYYSIERKNFDMRLGVKSSFS
                     FVHGSPFSPSADIHAEWKAIPKYFSIYAGITGGYNVNTMDEMFSENRYLYNDVRVKDT
                     YSPYEFYAGIKVKPIYNLLLDGYVDYRRIDNQYFFVNKEYKSNIITTADSVIFTNRFN
                     VLYSGASHLKIGVRANYNVRNLVNVQFKGAYNGWEVASEDYAWNKPKWEANLSTDFRI
                     NHDLSVSANVFYEGERYAKLGNLLPIRMHDKVDINIGAAYSYNDWFTVFMKVNNLINN
                     PYQDFYGYDVQGFNGLVGVAFSF"
BASE COUNT          767 a          493 c          461 g          613 t
ORIGIN      
        1 acgacaacca aacgacgata aacattgtaa acgaaattat gaccgatccc cgttcaagcg
       61 acgagttgaa agccgaagcc cgttacaatc gagccaaagc atatattgca ctgggacagt
      121 cttcacaagc aacttccgat cttaaattat tggccacaga aacacggact gcaaatggag
      181 ccgaatcgaa atatttgcta gcaaacctgt atttcgaaca aggcaaattg gccgacaccg
      241 aaaaagaagt ccttgatttt gcaaagaaaa acacaccgca ccagttttgg ctggcgcgta
      301 gttttgtgtt attagccgat gtttatatca aacaaaacaa tgattttcag gcaaaacaat
      361 atttattaag tttgcaaaaa aactatacga cagccgacgt aattcaaaca ttaattacag
      421 accggttaaa tgctatcagc gagcgggaaa agaacacaat cattaattaa tcgctgagag
      481 ttcatatttc aactatcata actttataaa ttgtatgaaa acattaaaat atatattgcc
      541 tgtgcttttg tttgcaaccg gttcaactac gcagctattg gccgaagatt ccatcgtgaa
      601 ccgcaacatc acggttgaac gggaattcaa acccgttatt aaagatgccg gaaaaataaa
      661 ttccacgcca cagacactgg agcctaaagt ggaaaaagtg gcagcaaaat tcagtgattt
      721 caattacccg ctgaatgccg attacaatat ccacaccctg cctgcagcag aattgcaacg
      781 cgaaaaaaga ccggatgcga aaggtggatt tgcccgcttg ggagttggga ataatataaa
      841 cacattggcc gattttgctt atccgctcat taaaagcaag gaaacaaaac ttgatttctc
      901 gctgaatcat ttgggtacct tcaattacca ggcacattca acgaccaaag cagctctttc
      961 gttcgaccag tatttcagca ctttcaattt gtatgccggc ttaggtggcg gacatgaata
     1021 cctgaaatat tacggatata acttcaatgg caaaaattct gttatcgatt tagatacact
     1081 ggcaaaaaca aacggctcag attcatatct ggagcaaaat ctggttagta tcaatcgcac
     1141 agctcataac tttactgtaa atgaactggc aaatgattcg aacagcaata ccttttggcg
     1201 attcaacgcc tttgcaggtg tgcgttcgct tccgctatca aaaggcatac ggtaccaggc
     1261 cgaaatacaa tacaaagtgt ttgatgccag aaacggactg acagaaaacc tgcttcacac
     1321 aaaagccggg ttcaacggac aaagcgaaaa aaatcgcatg ggacttgacc tcgatatgta
     1381 taatttgtca tacaaatcca gcaatccagc cgtattgaat tatttagacg cctacaccat
     1441 atttgccatg aatccgtatt acagcatcga acgcaaaaac tttgatatgc gtttaggtgt
     1501 gaaatcaagc ttctcgtttg tacatggcag tcccttcagc ccttcagccg acatacatgc
     1561 cgaatggaaa gcgattccaa aatacttttc catatatgcc ggaattactg gcggatataa
     1621 cgtaaacacc atggacgaaa tgttttccga aaaccgatat ttatacaacg atgttcgtgt
     1681 aaaagacacc tattcgccct atgaattcta tgcaggcatt aaagtaaaac caatttataa
     1741 cctgttgttg gatggatatg ttgattatcg gcgtatcgac aaccaatact tttttgtaaa
     1801 caaagaatat aaatcaaaca tcattaccac tgctgattct gtgatattta ccaaccgctt
     1861 caatgtgctt tacagcggag cttcgcatct gaaaattggt gtacgtgcca actacaatgt
     1921 acggaacctg gtgaatgttc agttcaaggg agcctacaac ggctgggaag tagcttcgga
     1981 agattatgca tggaacaagc ctaaatggga ggccaacctg agtaccgact tccggattaa
     2041 tcacgacctg agtgtttcgg ctaacgtatt ttatgagggc gagcgatatg ccaaactcgg
     2101 caacttgctt ccaatacgaa tgcacgataa agtggatatt aatatcggtg cagcttattc
     2161 ctacaacgac tggtttactg tttttatgaa agtcaataat ttgataaata acccttatca
     2221 ggatttttat ggttacgatg tgcaaggctt caatgggtta gtgggagtag cattttcgtt
     2281 ctgaactaaa aattgcagat aaattatccg tactgaagtc cccaaaaccg ggga
//
LOCUS       DATDNM010000110         2468 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_441439, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000110 DATDNM010000000
VERSION     DATDNM010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441439"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(513..1139)
                     /locus_tag="VI413_01880"
     CDS             complement(513..1139)
                     /locus_tag="VI413_01880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913396.1"
                     /translation="MGTIKVSTDFSSRSYTDTELSVTAISITDNMTGNAHFETPIPPL
                     ADIKATIASYNAALAKAEKGSPDDRLVKNTLRTKLEGELKELGLYVQLTSKGDSLIIS
                     SSGFYVNKKPTAVGPLAKPENVMVKMGDNPGSVVVSCDSITSVVFYEFDYAEVTPDGI
                     LNWIHKTSTKRKLLIEGLISGKQYIFRVAGAGSDPSRIWSDKITTFVV"
     gene            1531..2316
                     /locus_tag="VI413_01885"
     CDS             1531..2316
                     /locus_tag="VI413_01885"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEY6913397.1"
                     /translation="MSELKTEFQELLHAHTCTITDSMKFKRDAQFEMLPKLTRQKANS
                     YTVFDMNEGRYVFHSSAHAKWLNAPCIEVDRQDNTGLLYELTHPDDLTNVLKNKLKGF
                     SDLMKLQAGERADFSFRYLSRIKDNKGGYQLYIHCVSVMLCDEKDIPWLILIVTERLP
                     ECCCNEKCMADIYNLLPLLDYSKSLNKTNLYLSAHHLKILGMVYDGLNQHQIAFNLNI
                     SPDTIRGHYTLIRKKLNIKSILMASIYAKIIGLMNVFLICLVL"
BASE COUNT          736 a          488 c          442 g          802 t
ORIGIN      
        1 gcttctagaa gttctcttaa aaataaattc aatccgtttt tcttcgtgta agcagaaaaa
       61 ccaataaaat tttcaaattc attatccata aaagattttc tgagatagta ttcagtcgtc
      121 ttcaatgtgc catttaagcc gtttccaatc agttctactc tcattttttc ttttttttaa
      181 tatgctgcat aacattcctg tatgagcacc ttggtgctta tagtacagct atatctggaa
      241 gttaataatg ttttattgtg cagcttgtca gacacataca tcggaatcac atttttaacc
      301 caagtgttca tacaggaatt taaccagtat ttaatttata gtgtttagca ggtcttttat
      361 ttttttcagc cccaaagata aacaacacat ttaacacaac caattatttc tttaattatt
      421 tttaattaat tcgtaaaaaa aaccgtgtgg cctgcacgac tacacggttt tcaacaaaac
      481 atctatctga cggggttgat tatctctgaa atttaaacta caaaggttgt tattttgtcg
      541 ctccaaatgc gcgaagggtc gctgcctgca cctgccaccc tgaaaatata ttgtttgccg
      601 ctaatcagcc cttcaatcaa tagtttgcgt ttggtagagg ttttatgaat ccagttgagt
      661 atgccatcgg gtgtaacttc agcataatca aattcgtaga aaaccaccga agtaatgcta
      721 tcgcaactta ctaccacact tccggggtta tctcccattt ttaccatcac attttccggt
      781 tttgctaatg gccctaccgc cgtaggtttc ttatttacat agaaaccact gctactgata
      841 atcaggctat cgcctttact ggttaattgg acatacaaac ccaattcctt aagctcacct
      901 tccagtttag tgcgtaaggt gttttttacc aaccgatcat ccggacttcc tttttcagct
      961 ttggctaaag ctgcattgta actggcaata gttgccttta tgtctgccag aggcggaatg
     1021 ggggtttcga aatgtgcatt accggtcatg ttgtccgtaa tacttattgc agttacactt
     1081 aactctgtgt cggtgtaact ccttgacgaa aaatctgtcg aaacttttat tgttcccata
     1141 ctttttcttg ttttgttttt aatagttatt atcagataga atgtttctta ttgatttgca
     1201 gcacattgaa tactatttaa gcttattgat tcttctgtgt tcttcgttga aaaagcatta
     1261 aaagttgggt cgtttttcta ttctgctacc atttcatccg aataaaaatg tcagtttcaa
     1321 caagcaaagg gcatttctta attcggttgt aaagaaagag ggttctaatt gtattaacaa
     1381 tagtacctaa gtactgattt ttattatttg attaaaataa tcagatagaa atgcaatata
     1441 atcggaatat gcgtgttaac tttgttatct gaattgataa taataatcct attgataatt
     1501 gctaaccaga agctaaatat gaatgcccca gtgtcagaac taaaaacaga atttcaggag
     1561 ttgcttcatg cgcatacctg taccataacc gattccatga aatttaagcg cgatgcacaa
     1621 tttgaaatgt tacccaaact caccaggcaa aaagctaact cttacacagt gttcgacatg
     1681 aacgaaggca ggtatgtttt ccattcgtcg gctcacgcca aatggctgaa cgcaccttgt
     1741 atagaagtag accggcagga taacaccgga ctgctgtatg aacttaccca ccctgacgat
     1801 ctgactaatg tattgaaaaa taaactgaaa ggtttttcgg atttaatgaa actgcaggcg
     1861 ggggaaaggg cggatttttc gtttcgctac ctgagcagaa taaaagataa taaaggtgga
     1921 taccaactgt atatccattg tgtgagtgtt atgctgtgcg atgagaagga tattccgtgg
     1981 ctgatactga ttgttaccga gaggttaccc gaatgttgct gcaacgaaaa gtgcatggcg
     2041 gatatttata acctcttgcc cctactcgac tactcaaaaa gcctgaataa aaccaattta
     2101 tatttgtcgg cgcatcattt aaaaatactc ggaatggttt acgacggact taaccagcac
     2161 caaattgctt tcaacctgaa tataagtccg gataccattc gtggacatta tacccttatc
     2221 cggaaaaaat taaatatcaa atccattctt atggcttcta tctatgcaaa aataatcggg
     2281 ctgatgaatg tgtttctgat ttgtttagtt ttgtgagaaa ccttttcccg gacaaattag
     2341 aaatagaata taacaaaccc ctccgctacg ctcgtcccct taaaaagggg acatccgaga
     2401 aatccggagt tatttacaat gaatgagctt ggtgactcag aacaaccgcc ctaagcggtt
     2461 tgtaggct
//
LOCUS       DATDNM010000111         2619 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_548439, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000111 DATDNM010000000
VERSION     DATDNM010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2619
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_548439"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..598
                     /locus_tag="VI413_01890"
     CDS             <1..598
                     /locus_tag="VI413_01890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006281210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6913398.1"
                     /translation="FTIYECLIDNVPSIQAIHPTDVENLFILPSHIDLVGAEIEMLNM
                     DNRERVMQNLITPLKENYDYILIDCSPSLGLITVNALTASDSVIIPVQCEYFALEGIS
                     KLLNTIKIIKSKLNPALEIEGFLLTMYDNRLRLANQVYAEVKKHFQGMVFEAVITRNV
                     RLSEAPSHGKPVLLYDSESKGSSNYMDLAKELIAKHSN"
     gene            655..1536
                     /locus_tag="VI413_01895"
     CDS             655..1536
                     /locus_tag="VI413_01895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEY6913399.1"
                     /translation="MAKNTGLGLGRGLGALIDTDNISTSGSSSISEVELNLIFANPNQ
                     PRTYFDEDSLTELATSIRELGVISPITLRKNDDGTYLIIAGERRFRASKLVGLKSIPA
                     YVKTAADEQVMEMALIENIQREDLNAIEIALTFYRLMEEYKLTQERLSERVGKKRATI
                     ANYLRLLRLPAEIQMGIKDKKIDMGHARAILGLNDPAAQLHLYEAILENDFTVRKVEE
                     LVRMYIETGAFEIKSKATPNPIKNLPEFDDLKTQLTKVFGTKVQFACNPDGKGKISIP
                     FSNDEELARIMELFDKI"
     gene            1550..2230
                     /locus_tag="VI413_01900"
     CDS             1550..2230
                     /locus_tag="VI413_01900"
                     /inference="COORDINATES: protein motif:HMM:NF040144.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5683 domain-containing protein"
                     /protein_id="HEY6913400.1"
                     /translation="MNRYLNIVFLIFFLISFGVHAQVIPDSSKVVPDTLKSVLKKPIA
                     AIQEIKMPDTMALKPFKPDPMKVVWMGAIIPGYGQILNRKFWKLPLVYGGFLGCAYAL
                     AWNGSKYQSYKTAYRDITDTDPTTNTFLDILPPGLTIDSPGIGGMSTFTNTLKQKQEN
                     FRRYRDLSIIATVGYYALTLVDAYVDAQLYDFDISPDLSLRLQPTMLENSFGQRNTFG
                     MQCCINLK"
     gene            2262..>2619
                     /locus_tag="VI413_01905"
     CDS             2262..>2619
                     /locus_tag="VI413_01905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase"
                     /protein_id="HEY6913401.1"
                     /translation="MRFKTLLSVGLFFLLSSTCGFSQELVKSNLNDGDLNMEASLAIP
                     DEFDNSLDYLTHSWIIQRAKSSNCKSSEDVPVSDSICKLRLSKMPCLMEMPYNSTVRS
                     FIDLYTVRKRNQVEYML"
BASE COUNT          825 a          428 c          551 g          815 t
ORIGIN      
        1 atttaccatt tacgaatgtt tgattgataa tgttccgtca atccaagcta ttcatccaac
       61 agatgttgag aacttattta ttcttccgtc tcatattgac ttagttggtg ctgaaattga
      121 aatgctaaac atggacaatc gcgagcgtgt gatgcaaaat ctgattacac cgctaaagga
      181 aaattacgat tatattttaa ttgactgttc gccttctttg ggtttgatta cagttaacgc
      241 actgacagct tccgattcgg ttattattcc ggttcaatgt gagtattttg cattagaagg
      301 aatcagtaag ttgttgaata ccataaaaat aataaagagt aaattgaatc ctgcacttga
      361 aattgaaggt ttcttactta ctatgtacga caaccgcttg aggttggcta atcaggttta
      421 tgccgaagtg aaaaaacatt ttcagggcat ggtattcgaa gcagttatca cccgaaatgt
      481 tcgtttgagc gaggcgccaa gtcacggaaa accggtgttg ctctacgatt cagaatcgaa
      541 aggttcttca aattatatgg atttagcaaa agaacttatc gccaaacatt caaactgatc
      601 attgtttttt aaggcggaat aaaagtttat aaaagaagtt ttttacatac aaatatggca
      661 aaaaatacag gattaggttt aggtagaggc ttaggggctt tgattgatac agacaacatc
      721 agtacgagtg ggtcatcgtc aataagtgag gtggagttga atttgatttt tgcaaatcca
      781 aatcagcccc gtacatattt tgatgaagat tcattaaccg aactggcaac ttcgatacgc
      841 gaattagggg ttatttcacc tattactttg cgtaaaaacg atgatggaac ttatttgatt
      901 attgcaggtg aacgtaggtt cagggcatcg aaactggttg ggctgaaaag catccctgct
      961 tatgtgaaaa cggctgctga tgagcaagta atggaaatgg cgttgattga aaatattcaa
     1021 cgcgaagatt taaatgccat cgaaattgca cttacgtttt atcgtctgat ggaagaatat
     1081 aaactgacac aggagcgttt gagtgaacgt gtaggtaaaa agcgtgctac catagccaac
     1141 tatttgcgtt tactccggtt gccggctgaa attcagatgg gaatcaagga taaaaaaatt
     1201 gacatgggac atgcccgtgc cattttagga ttgaacgacc cggcagcgca attgcatttg
     1261 tatgaagcaa ttctcgaaaa tgattttact gtacgtaagg tggaagaact ggttcgtatg
     1321 tatattgaaa ccggggcatt tgaaattaaa tcaaaagcta caccaaatcc gataaaaaat
     1381 ctgcccgaat ttgatgactt gaaaacgcaa ctgaccaaag tttttggtac taaagttcag
     1441 tttgcttgta atccagacgg taaaggtaaa atctcaattc ctttttcgaa tgatgaagaa
     1501 ttggcacgca tcatggaact tttcgataaa atttaatgaa aacccgttgg tgaacagata
     1561 tttaaatata gtttttctga ttttcttcct aatatcattt ggagttcatg ctcaggtgat
     1621 ccccgatagt agcaaagtag ttcctgatac gttgaaaagc gtattgaaaa aaccaattgc
     1681 tgcaatacag gagatcaaaa tgcctgatac aatggcacta aagccattta agcctgatcc
     1741 aatgaaagta gtttggatgg gggctattat acctggatac ggacaaattc tgaatagaaa
     1801 attctggaaa ctgcctttgg tttatggtgg atttttgggc tgtgcttacg ctttggcgtg
     1861 gaatggaagc aagtatcaat cgtacaagac agcatacaga gacataactg atacagatcc
     1921 aactactaat acttttttgg atattttacc tcctgggtta accattgata gtcccggaat
     1981 tggaggtatg agtacgttta caaatacatt aaagcaaaag caggaaaatt ttcgtcgtta
     2041 ccgtgacctg agtattattg caacagttgg atattacgcc ctgacattag ttgatgctta
     2101 tgttgatgct caattgtatg attttgatat aagcccagac ttatcattgc gtttacaacc
     2161 aaccatgctt gaaaattcgt ttggacaacg gaatacattt ggaatgcagt gctgcattaa
     2221 tttgaaatag agtagtttta taaaagaaat aatgttttgt aatgagattt aagacccttc
     2281 tttctgtagg tttgtttttt ctgttgagta gtacgtgcgg tttttctcag gaattggtga
     2341 aaagtaattt gaacgatggt gatctgaata tggaagcttc attggccatt cctgatgaat
     2401 ttgataattc tcttgattat ttaactcact catggattat tcaacgagca aaaagttcca
     2461 attgcaaatc gagtgaagat gttcctgttt ccgattcaat atgtaaacta cgactttcga
     2521 aaatgccatg tttgatggag atgccctaca actcaaccgt acgatcattc atagacttat
     2581 acactgttcg taagagaaat caggttgaat atatgttgg
//
LOCUS       DATDNM010000112         3107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_761483, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000112 DATDNM010000000
VERSION     DATDNM010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_761483"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..673)
                     /locus_tag="VI413_01910"
     CDS             complement(<1..673)
                     /locus_tag="VI413_01910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913402.1"
                     /translation="MPKILFIQPTQYAESGKLCKQTKINLPGLAFPLLAAYTPKHWEV
                     ELLIEVVDEIDFESNADIIGIGTMGHATFRGLEIAAEFKKRGKTVIMGGYMASIAYKE
                     AMKYVDSVIIGDAEISYPKMLKDFEDTGKVEPLYNCPINELKNLPVPRYDLLMQKKIG
                     AMLPVQAGRGCTFTCSFCSIACLYEGQYLFRPVDEVIRDIKEVKRLGFNRFYLIDDNI
                     VSNPKY"
     gene            complement(666..2036)
                     /locus_tag="VI413_01915"
     CDS             complement(666..2036)
                     /locus_tag="VI413_01915"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY6913403.1"
                     /translation="MKILMIRPKPTSETIGLQHMMIVEPLELEVLCALKRESDSVVIV
                     DMILEKRSFESFFLEHKPDILCITGYITNVSTIISYCRIAKTMNNKIVNIVGGVHCEV
                     CPEDFENEAIDYRVVRNAAIVFTDLLNHIDQRTALPAGVFRPGDTLENTTLPAFDFRV
                     PFPDRKQVANYRNKYFYIFHEKVALIKTSFGCPYQCSFCFCRIITNKIYYQRPLAEVI
                     EELEQIEESEIYIVDDDFLVDKKWLQAFIAEVKKRNINKHYLVYGRADFIAQHPDIMH
                     ELAGIGLRTVIVGFESFSDKELDKYNKKTSVAMYRETMAVLNREKIDVFATIIIPPEW
                     DRADFNNMVKVIKELGIHFVNLQPLTPLPKTGVSYPENRILIDRSDYDKWDLAHISVQ
                     PEKLTVPEFYKEILKAYNAVIFRPDVLWKYLKTYRLPMLFKMLVGSYRVSKQYKTKIK
                     EAEKHA"
     gene            complement(2033..3040)
                     /locus_tag="VI413_01920"
     CDS             complement(2033..3040)
                     /locus_tag="VI413_01920"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6913404.1"
                     /translation="MIEFKLIETTVEFPKTWDKLAENYFQQRKFLTHAEKFNPCRQRY
                     YICFEDGEAVAAAIVYSIRIDILTFVKVKSPLKMNIVGIPCSVSSPGVFGKKAFVEAL
                     KTYIYQAEDGLLLFLNLPEKTKDMSHASGYTLPTIVFSNKYVDWNDYVASLRTGYRRR
                     LKQINQNNPDLRLEKKKCSAFTEEMYKQYLEVYNRSNGKLEKLTFDFFRNLPPEFILT
                     VCYEKDTIIGWNLALAHENMYYFFLGGIDYKRNRINNTYLRLLSGLIHDGIERKAEFI
                     ELGQTAETPKMRMGGKPETLYMEAYHSNGLMNGLLKLGKPLLEYKRKLENTNALKEEL
                     R"
BASE COUNT          842 a          688 c          625 g          952 t
ORIGIN      
        1 gatatttcgg attggaaaca atattgtcgt cgatgaggta aaaacgattg aaaccgagcc
       61 gcttcacctc ttttatatca cggataacct cgtcaacggg ccgaaacaag tattgacctt
      121 cgtacaggca agcaatggag caaaacgagc aggtaaaagt acatcccctg cccgcctgaa
      181 caggcagcat cgctcctatt ttcttttgca taagcaggtc gtaacgcggc accggaagat
      241 ttttcagttc attgatgggg cagttataca aaggctctac tttgcctgta tcttcaaaat
      301 ctttcagcat tttaggatac gaaatttccg catcgccaat gattaccgaa tccacatatt
      361 tcatggcttc cttgtaggca atggatgcca tgtaaccacc cattatcact gttttgccac
      421 gctttttaaa ttcggcggca atttccaacc cgcggaaagt ggcatgtccc atggtgccaa
      481 tgccaataat gtcagcattc gactcaaaat caatttcgtc gacaacttct ataagcaatt
      541 ccacttccca gtgtttgggt gtgtaagctg ccaataacgg aaaggccaac cccgggagat
      601 tgattttagt ctgtttgcac agcttgccac tttcggcgta ttgcgtgggt tgtataaata
      661 gaattttagg catgtttttc ggcttcttta attttagtct tatactgttt tgacacgcgg
      721 taacttccta cgagcatttt gaaaagcatg ggcaatcgat atgttttgag gtatttccaa
      781 agtacatccg gtctgaaaat aacggcattg tacgctttga gtatttcttt gtagaattcc
      841 ggaactgtga gcttttccgg ctggactgag atgtgtgcca aatcccattt gtcgtaatct
      901 gatcggtcaa tcagtatgcg gttttcgggg taactaacgc ccgtcttggg gagcggtgtc
      961 agcggttgca ggttcacaaa atgaataccc agttccttaa taaccttcac catgttgttg
     1021 aaatcagccc tgtcccattc gggcggaata atgatagtgg caaaaacatc aatcttttca
     1081 cggttcagca cagccatagt ttcccgatac atagccactg aagttttttt attgtatttg
     1141 tccagttctt tgtccgaaaa actttcaaaa ccaacaatca cggtacgcag gccaataccg
     1201 gcaagttcgt gcataatatc aggatgttgg gcaatgaaat cggcccggcc atataccagg
     1261 taatgcttat taatattgcg tttctttact tctgcaataa atgcctgcag ccattttttg
     1321 tcaaccagaa aatcatcgtc tacaatgtaa atttccgatt cttctatttg ttccagctcc
     1381 tcgattactt ctgccaatgg cctttggtaa tagattttat tagttataat ccggcaaaaa
     1441 cagaaagaac attggtacgg gcagccaaac gatgttttta tgagcgccac tttttcatgg
     1501 aaaatgtaga agtacttgtt tctgtagttt gccacttgct tccggtccgg aaatggaacg
     1561 cggaaatcaa atgcaggaag tgttgtgttt tccaacgtat cgcccgggcg aaaaactccg
     1621 gcaggcaatg ctgttctttg atcgatatga ttcagtaaat cggtaaaaac aatagctgca
     1681 ttccgtacca cgcggtagtc tatggcttcg ttttcaaaat cttccggaca aacttcgcaa
     1741 tgtacgccac caacgatatt cactattttg ttgttcatag ttttggcaat ccggcagtaa
     1801 gaaattatgg tggaaacatt ggtgatgtat ccggtaatac acaatatgtc aggcttatgt
     1861 tcaagaaaaa atgattcgaa cgaccttttt tctaagatca tatccacaat caccaccgag
     1921 tcggactcac gctttagggc gcacaaaacc tccagttcca gaggctccac aatcatcata
     1981 tgctgcaatc cgattgtttc ggaagtcggc ttagggcgta tcattaatat cttcatcgca
     2041 attcctcctt tagtgcgttt gtattttcaa gtttccgttt gtattccagc aacggcttgc
     2101 ctagtttcaa taatccattc atcaacccgt tgctgtgata tgcttccata taaagcgttt
     2161 caggcttgcc gcccatgcgc atttttggtg tttcggcagt ttggcccagc tctataaatt
     2221 ctgctttacg ctcaatacca tcatgaatta accctgacaa cagccttaaa tacgtgttgt
     2281 taatcctgtt tcgcttataa tctattcctc ccaaaaagaa atagtacata ttttcatggg
     2341 cgagagccag attccaacca ataatagtgt ctttttcgta acaaaccgtc agaataaatt
     2401 ccggaggcag gttcctgaag aaatcgaagg taagtttttc aagttttcca ttactccggt
     2461 tgtacacctc caggtattgt ttgtacattt cttcggtaaa agcggaacac ttttttttct
     2521 caagccgcaa atccggatta ttctgattga tttgctttag ccgacgcctg taaccggtgc
     2581 gtagtgatgc aacgtaatcg ttccagtcaa cgtatttatt tgaaaaaaca atggttggta
     2641 aggtataccc ggaggcatgt gacatatctt tggttttttc gggcagattc agaaacagca
     2701 aaagcccatc ttctgcttgg taaatgtaag ttttcaacgc ctcgacgaaa gctttttttc
     2761 caaaaacgcc gggacttgat actgaacatg gaattcccac aatgttcatt ttcaacgggc
     2821 ttttgacttt gacaaacgtg agaatgtcaa tccggataga ataaactata gcagcagcaa
     2881 cagcttcgcc atcttcaaaa catatataat accgttgccg gcaaggatta aatttctcag
     2941 catgcgtcag gaacttccgt tgttggaaat agttttccgc cagcttgtcc catgttttgg
     3001 gaaactctac cgttgtttca atgagtttga attctatcat taaagtgtag tttcaaatgt
     3061 ggcatattga cgataaatct ccggttcaac accataacac cgttgca
//
LOCUS       DATDNM010000113         2299 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_761540, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000113 DATDNM010000000
VERSION     DATDNM010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_761540"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..845
                     /locus_tag="VI413_01925"
     CDS             <1..845
                     /locus_tag="VI413_01925"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEY6913405.1"
                     /translation="YFGLNFLKGIDIFSSVNNYYATYENIDGLVPSSPVYVKGFKVGQ
                     VEEVKYDFTKKQSFVIKISVSNDIQLPKGTIIQLYDNGLMGGKAIQLVYAPVVPTQAM
                     YEPNDTIASEVGIGLMGQLAGDLMPKIQSISTQADSLIRSVRVLVENKNLNKSISSIE
                     RTTADLAVSSAQLKKMMSADVPHILSNVNTVTSDFKQITGNLKKIDYAATFASIDHTI
                     ANLNLITEKMNGSEGTIGLLLNNKDLYINLSNTAANSDKLLIDLKENPKRYVQFSLFG
                     SKTK"
     gene            1245..>2299
                     /gene="dnaA"
                     /locus_tag="VI413_01930"
     CDS             1245..>2299
                     /gene="dnaA"
                     /locus_tag="VI413_01930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEY6913406.1"
                     /translation="MLNNHDQLWSRCLSVIKDNISEASFNTWFAPIVPLKYENNIFVL
                     QVPSQFFVEYIEEKYIDLLRMTLYREVGVGTRLEYRVLIDKSSGKGTQIPSASEQPKP
                     KAAANNSAYVSPYHKPQLPEIDPQLNPAYNFNNLIEGNSNKLARTAGISIGNEPGKNI
                     FNPLFVYGQSGVGKTHLANAIGVMTKQLHPEKRVLYVSANTFQIQYTDAVRSNTVNDF
                     LNFYQTIDVLIVDDIQEFAGKTGTQNTFFHIFNHLHQTGKQLILTSDRSPIVMVGLEQ
                     RLLTRFKWGLSAEIEKPDFDLRRSILESKIYRDGLEIPEEVVDFIAEHVVDNVRDLEG
                     VLVSLLAHSTLANMPID"
BASE COUNT          748 a          398 c          448 g          705 t
ORIGIN      
        1 tatatttcgg attgaatttt ctgaaaggaa tagatatttt ctcttctgtc aataactatt
       61 atgcaacata cgagaatatt gacggcttgg ttccttcatc accggtttac gtgaaagggt
      121 ttaaagttgg ccaggtggag gaagtaaagt atgactttac taagaaacaa tcttttgtaa
      181 ttaaaatatc tgtttctaac gatattcagc tgcctaaagg aactataatt cagctttatg
      241 ataacggttt aatgggtggt aaagccattc agttggttta tgctcctgtt gtaccgacac
      301 aggcaatgta tgagccaaat gatacgatag cttcggaagt gggaattggc ttgatggggc
      361 agttggcagg cgatttgatg cctaaaattc aaagcatatc tacgcaggct gactcactta
      421 ttcgttcagt tcgcgtattg gttgagaaca agaatttgaa taaaagtatc tcatcaattg
      481 aacggacaac ggcagatttg gctgttagtt ctgcccagtt gaaaaagatg atgagtgctg
      541 atgttcctca tattttaagc aatgtaaata ccgtaacttc tgactttaaa caaattaccg
      601 gaaaccttaa gaaaattgac tacgcagcta cttttgcaag catcgatcat accattgcca
      661 atctaaatct gattactgag aaaatgaatg gttctgaagg tactattggt ttgctgctga
      721 acaataaaga tctgtatatc aatctctcta ataccgcagc aaactctgat aaattactga
      781 tagatttgaa agaaaacccg aaacgttacg ttcaattttc actttttggc agtaaaacta
      841 aatgagttgt tatttaattc gattctaaat agtagaaagc gctaaaaata gtttactttg
      901 ggatttttta tagccgaaac cttttgttaa caagagtttc ggctttttta tctgtaaatt
      961 tgataaaatt acttacaatt cgttaatcgc tttaatatca gagatgtttc aaaaatgtta
     1021 cgattaaatg tctgtaaatc aagggtagtg tctaatgcac tgataataaa acggatgata
     1081 ggccagtccg agttgcaaaa attaaatgat ttttttatct cggaaaagtt ttagaatttt
     1141 gtagtgctga aaatagcccg ttgtagaaac gcattccagc aagtttaatt tataatgttt
     1201 gtaccaactc gtagtcttta atttttttct gaactaaaac caaaatgctg aataatcacg
     1261 atcaattatg gagccgctgt ctaagcgtta ttaaagacaa tattagcgaa gcatcattta
     1321 atacatggtt tgcacccata gttcccttaa aatacgaaaa caatatattt gtattgcaag
     1381 tacccagcca gttttttgtt gagtatattg aagagaaata catcgatttg ttgcgaatga
     1441 ccctatatcg tgaagtgggt gttggaacac gcttggaata tcgcgtgctg attgacaaat
     1501 caagtgggaa aggtactcaa ataccaagtg ccagcgaaca accaaagcca aaagcggctg
     1561 cgaataattc agcatatgtt agcccatacc acaaaccgca attgccagag attgatccgc
     1621 aattgaaccc tgcgtacaat ttcaacaatt tgattgaagg aaacagcaat aaactagctc
     1681 gtacggccgg aataagcatc ggaaacgagc cgggtaaaaa tattttcaat ccattgttcg
     1741 tttacggaca atcaggagtt ggaaaaacac accttgcaaa tgcaattggt gtaatgacaa
     1801 aacagttgca cccggaaaaa cgcgtgttgt atgtttcggc taataccttt cagattcaat
     1861 ataccgacgc agtaagaagc aatacagtaa acgacttttt gaacttctat caaacgattg
     1921 atgtattgat agttgatgat attcaggaat ttgccggtaa aaccggaact caaaatactt
     1981 ttttccatat tttcaaccat ttgcaccaaa caggtaaaca actgatattg acttcagacc
     2041 gttcgccaat tgtaatggta ggattggagc aacgcctgct tacccgtttc aaatggggat
     2101 tgtcggctga aattgaaaaa cccgattttg atttacgcag atcaattctt gaaagtaaaa
     2161 tttatcgcga tggactcgaa attcctgaag aagtagttga ttttattgct gagcacgtag
     2221 ttgataacgt acgtgacctt gaaggtgttc ttgtttcctt actggcacac tcaacgttag
     2281 ccaatatgcc gatagatat
//
LOCUS       DATDNM010000114         2881 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_975735, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000114 DATDNM010000000
VERSION     DATDNM010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2881
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_975735"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1381
                     /locus_tag="VI413_01935"
     CDS             <1..1381
                     /locus_tag="VI413_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6913407.1"
                     /translation="FKLNNSSDWILMYDMYTSGRYQFTRSSNLEDFKVIDQDVTMDFH
                     PRHGTVLPITANEASRLKTYYTKAEDILTSAKAEGLRPVNIVVDNTAKKVTFPVESTT
                     DLSTFKPNFGSDKEISVKPAGNSDFSKGDVTYNLKIGKTTKKYTATAVKNHNPVLNGL
                     YADPDVLYSEKTGKFYIYPTSDGFTGWSGTYFKCFSSDNLVNWKDEGVILQLGKDVSW
                     ANRNAWAPCIVEKKINGQYKYFYYFSAAQKVGVAVSDNPTGPFVDLGKPLIESRPEGV
                     NGGQVIDQDVFTDPKTGKSYLYWGNGFMAGAELNDDMTSIKQETLTILKPDRTFREGT
                     YVFYRNGIYYFMWSEDDTRSENYRVRYATSNSPLGEFTIPENNLVIAKDKEAGIFGTG
                     HNAVLQIPGKDEWYIVYHRFNYPKGINMGDAAGYNREVCIDKMEFNADGSIKQVTPTH
                     KGIEPVSLK"
     gene            1461..>2881
                     /locus_tag="VI413_01940"
     CDS             1461..>2881
                     /locus_tag="VI413_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-N-arabinofuranosidase"
                     /protein_id="HEY6913408.1"
                     /translation="MKTRSVFLLLLIGISLQAEQKKTNNSKQISPDLVGVFFEDINYA
                     ADGGLYAEQVQNRSFEYAPSDKSGWNSLTAWEYVAWGFGYGTVSVETSSPIHPNNPHY
                     AVLNIEEVGREGIGLKNSGFDGMVVKAGEKYNFSVFLRQLSENEVPFGIKIYNRKGKL
                     LGETTLSAASKDWKKYNATINITQSSDTADLVLLATGKGKVAIDMVSLFPEKTFKNRT
                     NGLRADLAQAIADLQPKFMRFPGGCLVHGDGLGNMYRWKNTIGPVEQRIEQRNIWGYH
                     QTAGLGYFEYFQFCEDMGAKPLPVVAAAVSCQNSGGTWRIGGTGQKGIPQAEMPEYIQ
                     EVLDLIEWANGPVTSTWGAKRAEAGHPKPFNLEYIGIGNEDKITPEFKERFKMIFDVV
                     KAKYPQIKVIGTVGPAPDGEDFELGWKFANQENIPLVDEHYYMKPTWFIANQKRYDSY
                     DRSKSKVYLGEYASQGNSLFNAIA"
BASE COUNT          914 a          586 c          639 g          742 t
ORIGIN      
        1 attcaaactt aacaattctt ccgattggat tttaatgtac gacatgtaca ccagtggccg
       61 ctatcagttt acacgcagtt ccaatctgga agatttcaaa gttatagacc aggatgtaac
      121 catggatttt cacccgcgtc atggaactgt gctacctatt actgccaatg aagccagccg
      181 cctgaaaaca tactatacaa aggctgaaga tattctgact tcagctaaag cagaaggtct
      241 gcgtccggta aatatcgtag tggataatac agctaagaaa gtaactttcc ccgttgaatc
      301 aacgaccgat ttgagtactt tcaaaccgaa cttcggttct gacaaagaaa tttctgtaaa
      361 accggcgggg aactctgatt tcagtaaagg cgacgtaacg tacaacctga aaatcggaaa
      421 aacaactaaa aaatatactg ccacagcagt aaaaaatcac aatcccgtgt tgaacggtct
      481 ttacgctgac ccggatgtgt tgtattccga aaaaaccgga aaattctaca tctatcctac
      541 cagcgacgga tttaccggtt ggtcaggcac ttatttcaaa tgtttttcgt ccgacaatct
      601 tgttaactgg aaagacgaag gcgttattct gcaactgggt aaagacgtaa gttgggcaaa
      661 ccgtaacgcc tgggcacctt gtattgtgga aaagaaaatc aacggacaat ataaatattt
      721 ctattatttc agtgctgccc agaaagttgg tgtggccgtt tcagataatc caaccggtcc
      781 gtttgttgat ttaggtaaac cgctgattga aagcagaccc gaaggagtta atggtggaca
      841 ggttattgac caggatgtat ttacagatcc gaaaacaggc aaaagctacc tgtattgggg
      901 aaatggtttt atggcaggag ctgaacttaa cgacgacatg acttccatta agcaggaaac
      961 gttgaccatt ctgaaacctg accgcacttt ccgcgaagga acttatgttt tctatcggaa
     1021 tggcatttat tattttatgt ggtcggaaga cgacacgcgt agcgaaaact accgggtacg
     1081 ttacgccact tccaactctc cgcttggaga attcacgatt cccgaaaata atctggtcat
     1141 tgccaaagac aaagaagccg gaatattcgg aacaggccat aatgcagtac tgcaaattcc
     1201 gggcaaagat gaatggtata ttgtgtacca ccgcttcaat tacccaaaag gaataaacat
     1261 gggtgatgct gccggttata accgagaagt ttgtatcgac aaaatggaat tcaatgccga
     1321 cggaagcatc aaacaggtaa cacctactca caaaggaatt gaacctgtga gtttaaaata
     1381 aaactttatc attcattttc ttcatatagt ctgagtatgg cttccggtcg cactcaggct
     1441 atattcatta atctactgtt atgaaaacaa gatccgtatt tctattatta ttgattggaa
     1501 tttcgcttca ggccgaacaa aagaaaacga ataattcaaa acaaatcagc cccgacttag
     1561 ttggtgtatt tttcgaagac attaattacg ctgccgatgg aggattatac gccgaacagg
     1621 ttcaaaatcg ttcatttgag tacgcaccaa gcgacaaatc aggctggaac tccctcacag
     1681 catgggagta tgtagcctgg ggatttgggt atggaactgt ttccgttgaa acgagttcac
     1741 caatacatcc taacaatccg cattatgcag ttttgaatat cgaagaggtt ggacgtgagg
     1801 gaatcggatt gaaaaattcg ggcttcgacg gaatggttgt aaaggccgga gaaaagtata
     1861 acttctcggt ttttctgcgc cagctttcgg agaatgaggt tccatttgga atcaaaattt
     1921 acaatagaaa aggtaaatta ctgggcgaaa ccacactttc agctgcatca aaagactgga
     1981 aaaaatataa tgccacaata aatatcactc agagttcaga caccgccgat ttagttcttt
     2041 tagccacagg caaaggtaaa gttgctattg atatggtttc gctttttcct gaaaaaacat
     2101 ttaaaaaccg gacaaacgga ttacgtgcag atttggcgca agctattgcc gatcttcaac
     2161 ctaaatttat gcgtttcccg ggaggttgcc tggttcacgg tgatggactt ggcaatatgt
     2221 acaggtggaa aaatacaatt ggcccggtag aacagcgcat tgaacaacga aacatatggg
     2281 gctatcatca aaccgccgga ctaggatatt ttgaatattt tcagttttgc gaagatatgg
     2341 gagctaaacc actaccggtt gtggctgctg ctgtgagttg ccaaaactca ggcggaacct
     2401 ggcgcattgg cggaacggga caaaaaggta ttccgcaagc cgaaatgccg gaatacattc
     2461 aggaagtatt ggatttgata gaatgggcaa acgggcctgt aacttccacc tggggagcaa
     2521 aacgtgccga agcaggacat ccaaaaccat ttaatcttga atatatcggt attggtaacg
     2581 aagataaaat taccccggag ttcaaagagc ggttcaaaat gattttcgac gtggtaaaag
     2641 caaaataccc tcaaattaaa gttattggaa ctgtagggcc ggcacctgac ggagaagatt
     2701 ttgaactggg ttggaaattt gcgaatcagg aaaatatacc actcgtcgac gagcattact
     2761 acatgaaacc aacctggttc attgctaatc aaaagcgtta tgattcctac gaccgatcaa
     2821 aatcgaaagt ctatctcggc gaatatgcat cgcagggaaa cagcttgttc aacgccattg
     2881 c
//
LOCUS       DATDNM010000115         5544 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_14261, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000115 DATDNM010000000
VERSION     DATDNM010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5544
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14261"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            217..1731
                     /locus_tag="VI413_01945"
     CDS             217..1731
                     /locus_tag="VI413_01945"
                     /inference="COORDINATES: protein motif:HMM:NF014453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEY6913409.1"
                     /translation="MKLYKPAYIYFFIDILLLLLSFYVVLDWLPLTTNTPFDKYSLPS
                     LYYLLTWLVCSYALQRYRPLKKQNYFTAILKLFYTTLFVFVLYGVLIYYFYKPYSGFV
                     LLTISTGVFVVNYILLSLYFAYRFAVEYNDIDIKPYKKRIHAILKRAERLDEDSYKML
                     ASTIVGHSGKNLLDFLNKHVNLKSGNTLVYLSTEPENLEMMPNYQYSTIIQLERLNFM
                     RNVNKRLYIINEKLPDNGVFVCCFESKSTRKKRILHKYPFFINHIVYFIDYMFKRVMP
                     KIFLTRGLYYFITGGKNRIFSKTEVLGRLYCFGFKVIREKKIGKLTYIFAEREKEPVI
                     GQTKIYGPLIRLHRYGKNGEPFEVYKMRTMHPYSEYLQSYIYERNSLKDGGKFNRDIR
                     VTNLGSMLRKYWLDELPMIFNLLKGEMKLVGVRPLSAHYFSLYSKELQEKRIKYKPGL
                     LPPFYADMPRTLDEIQESELKYLTLCEEKGVFITDIKYLFGILKNILFKRARSA"
     gene            2062..4062
                     /locus_tag="VI413_01950"
     CDS             2062..4062
                     /locus_tag="VI413_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEY6913410.1"
                     /translation="MFMEEEKITGLPENASRVLRDGEEYKPLLSPDKNYPEVNMRSVT
                     WGLLMAVLFSAAAAYLGLKVGQVFEAAIPIAIIAVGLSSATKRKNALGENVIIQSIGA
                     SSGVVVAGAIFTLPALYILQAKYPGISVSFMQVFLSSLLGGVLGILFLIPFRKYFVSD
                     MHGKYPFPEATATTQVLVSGEKGGDQAKPLILAGLIGGLYDFVIATFGSWAETFTSRV
                     LPYGEALAEKAKVVFKINVGAAVLGLGYIVGLKYAAIICAGSALIWFVIVPVFPMLSD
                     SLVHVLNPSFTGILTDLPPEAIFKTFARHIGIGGIAMAGIIGIVKSRSIIKSAVGLAS
                     KEFKGKGHVVSADVKRTQRDISMKIIVIGVILALIATFIFFYFGVVTNLLHAVVGILV
                     VAIIAFLFTTVAANAIAIVGTNPVSGMTLMTLILASVVMVAVGLKGTTGMVAALVIGG
                     VVCTALSMAGGFITDLKIGYWIGTTPAKQETWKFLGTLVSAATVGGVIMILNKTYGFS
                     GEGALVAPQANAMAAVIEPLMSGVGAPWYLYGIGALISLVLTYFRIPALAFALGMFIP
                     LELNTPLIVGGAISWYVSTRSRDKALNTARHEKGTLLASGFIAGGALMGVVSAALRFG
                     GIDLMNTAWVESNGAEWLALVMYGAVIGYFVWDSMRVKSEEL"
     gene            complement(4383..>5544)
                     /gene="ettA"
                     /locus_tag="VI413_01955"
     CDS             complement(4383..>5544)
                     /gene="ettA"
                     /locus_tag="VI413_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HEY6913411.1"
                     /translation="RRRVALCRLLLRNPDILLLDEPTNHLDAESVEWLEHHLQQYAGT
                     VIAITHDRYFLDNVSGWILELDRGEGIPWKGNYTSWLEQKTARMAGEEKQASKRRKTL
                     ERELEWVRMAPKARHAKGKARLEAYDKLINEDQREKEEKLELFIPNGPRLGNKVVEAI
                     DVSKAFGDKLLFDNLNFMLPPNGIVGIIGPNGAGKTTLFRMMMGIEKADKGTFEVGET
                     VKIGYVDQSHADIDPEKTVYQVISGGTEFIRVGGREINARAYLSRFNFAGGDQEKLCG
                     VLSGGERNRLHLALTLKSEANVLLLDEPTNDIDVNTLRALEEGLEAFAGCAVVISHDR
                     WFLDRICTHIIAFEGNSEVFVFEGSYSEYEENKKMRLGDEAPKRIRYKKLMV"
BASE COUNT         1450 a         1126 c         1320 g         1648 t
ORIGIN      
        1 acactaaaca ctaaacacta aacactaaac actaaacact aaacactaaa cactaaacac
       61 taaacactaa acactaaaca ctaaacacta aacactaaac actaaacact aaacactaaa
      121 cattaaacac taaataataa acttgaatac ttgcttcaat ttctcaaaaa tcatcgtatt
      181 tttgtgttca ctattgaata attatccgaa ttaataatga aattatacaa accggcctat
      241 atttactttt ttatcgacat tctattgctc ctgctgagct tttatgttgt attagactgg
      301 ttaccactta ctacaaacac tccgtttgat aagtattcat taccatccct ttattattta
      361 ctgacctggt tggtttgttc ctatgcattg caacgctaca ggccattgaa gaagcaaaac
      421 tattttacgg cgatactgaa gttattttac actaccctct ttgttttcgt tctttatggg
      481 gtgctgattt attattttta taaaccttat tcgggatttg tattgctgac catatcaacc
      541 ggtgtttttg tggttaatta tattctgctt tcactttatt ttgcctatcg gtttgctgta
      601 gaatacaacg atatagatat caaaccgtat aaaaagcgta tacatgcgat actgaaacgg
      661 gccgagaggt tggatgagga tagctataaa atgctggctt cgactatcgt tgggcattcg
      721 gggaaaaacc tgctggactt tttgaataaa catgtcaacc tgaagagcgg gaataccttg
      781 gtttacttat ctaccgagcc ggagaacctg gaaatgatgc cgaactacca gtattcgact
      841 attatccaac tcgaaaggct gaattttatg cggaacgtca acaaacgact gtatatcatt
      901 aacgaaaagt tgcccgataa cggtgtcttt gtttgttgct ttgagtcaaa gagtacccgt
      961 aaaaaacgga tcctgcacaa atacccgttt tttattaacc acattgttta ttttattgat
     1021 tacatgttta aacgggtgat gcctaagata ttcttaaccc gtggcttgta ttattttatt
     1081 acgggcggta agaacaggat tttctccaaa acggaagtgc tgggccggtt gtattgcttt
     1141 ggttttaaag tgatccggga gaaaaaaatc gggaagctta cgtatatttt tgccgaacgg
     1201 gaaaaggagc cggtgattgg acaaaccaaa atttatggtc cgctgatacg tttgcaccgc
     1261 tatggtaaaa acggagaacc gtttgaagtg tacaaaatgc ggactatgca tccgtattcg
     1321 gaatacctgc aaagctatat ttatgaacga aacagtttaa aagacggtgg taagttcaac
     1381 cgggacatcc gtgttaccaa cctgggaagc atgctgcgca agtactggct cgatgaactg
     1441 cctatgattt tcaatctgct gaaaggcgaa atgaaactgg ttggtgtacg gcctttgagt
     1501 gcacattatt ttagtttgta cagcaaagaa ttacaggaaa aacgtatcaa gtacaaaccc
     1561 ggattgttgc cgccgtttta tgccgatatg ccccgcacac ttgacgaaat tcaggaatcg
     1621 gaattgaaat accttaccct gtgcgaggaa aaaggagtct ttattaccga tataaagtac
     1681 ttgtttggga ttctgaaaaa catattgttt aaaagagcca gaagtgcgta gggagattgt
     1741 tagaaggagt aagaggtaag gagtaaggag taagaggtaa gaggtaagag gtaagaggta
     1801 agaggtaaga ggtaagaggt aagaggtaag aggtaagagg taagaggtaa gaggcaagtt
     1861 tatagccaat agtttataat tcatatctaa atatacaaga cggaactaac tacaatctcc
     1921 tttagagcca gtccgacatt tgacggaggc tgtgggcggt ttgtttatca ggagttcaaa
     1981 attttaattc caccaacctt ttccaacgta aatgaacctt tggaaaggaa gctaaacgct
     2041 aatcattaat cactttaata catatttatg gaagaagaaa aaatcaccgg cttaccagaa
     2101 aatgcttcac gcgtgttgcg ggacggagag gagtacaaac ctttgctctc gcctgacaaa
     2161 aattatcccg aagtcaatat gcgctccgtt acgtggggat tgctaatggc tgtcctgttt
     2221 tcggctgctg ctgcctacct gggcctgaaa gtagggcagg tgtttgaagc ggccatccca
     2281 attgctatca tagccgtggg actttccagc gctaccaaac gcaaaaatgc gctgggcgaa
     2341 aatgtaatta tccagtctat tggtgccagt tcgggtgtgg ttgttgccgg ggccattttt
     2401 acgttgccgg ctttgtatat tcttcaggca aaatatccgg gtatctccgt cagttttatg
     2461 caggtgttcc ttagctcgct gttgggcggt gtgttgggca tccttttcct gattcctttc
     2521 cgtaaatact tcgtgtccga tatgcacggt aaatatcctt ttccggaagc tactgccact
     2581 acgcaggttc ttgtctccgg cgaaaaaggc ggcgaccagg cgaagcctct tattctggca
     2641 ggcttgattg gtggattgta cgattttgta attgctacct ttggttcatg ggccgaaaca
     2701 tttacttcgc gtgtgttgcc ttatggcgaa gcattggccg aaaaagcaaa agtggttttt
     2761 aaaatcaatg tgggggctgc ggttctcggg ttgggttata tcgtagggtt gaaatatgca
     2821 gccattattt gtgccggttc agctttgatc tggtttgtga ttgtgccggt atttccgatg
     2881 ttgagcgata gtctggttca tgtactgaat ccatctttta cgggtatcct gaccgatttg
     2941 cccccggaag ctatctttaa aacctttgcg cgtcatatcg ggattggtgg tattgccatg
     3001 gccgggatta ttggtattgt aaaatcgaga agcattatta agagtgcggt tggtctggct
     3061 tccaaagagt ttaaaggaaa aggacatgtt gttagtgccg acgtaaaacg cacccaacgt
     3121 gatatttcca tgaagataat tgtgataggt gttattttag cccttattgc cacgtttatt
     3181 ttcttttatt ttggtgttgt gacgaatctg cttcatgcag ttgtggggat tctggttgtt
     3241 gccattattg cctttctgtt taccacggtg gcggctaacg ctattgctat tgtaggcaca
     3301 aacccggtat cgggcatgac gttaatgacg ttgattcttg cttcggtagt tatggtggct
     3361 gttggcctga aaggcacaac gggtatggtg gccgcgctcg taatcggcgg tgtggtttgt
     3421 actgctttgt cgatggccgg cggctttatc accgacctga aaattggtta ctggatagga
     3481 acaacacctg cgaaacagga aacctggaaa ttcctgggaa cacttgtatc ggctgcaacg
     3541 gttggtggtg tcattatgat tctgaataag acctatggtt tttcaggcga aggtgcactg
     3601 gtagcgcctc aggctaatgc catggctgca gttatcgaac cgttgatgtc aggtgtggga
     3661 gcaccctggt atttgtatgg aatcggtgct ctcatttcgt tggtcctgac ttatttcagg
     3721 attccggcac tggcttttgc gttaggtatg tttattccgc tggaactgaa tacgccgctt
     3781 atcgttggag gtgccattag ttggtatgtg tcaacccgaa gccgtgataa agcattgaat
     3841 actgcccgcc atgaaaaagg aacactactg gcttccggat ttattgccgg tggtgctttg
     3901 atgggagtgg tgagtgctgc tttgcgtttt ggcggtatcg atttaatgaa tacagcctgg
     3961 gtggagagca acggggccga atggctggca ctggttatgt atggtgctgt tatcggttat
     4021 tttgtgtggg attccatgcg ggtgaaatca gaagaattat agccataaag gtgaaggaaa
     4081 ggtattcata accaaatata attatctttt agaatcctga aaggattcaa tgtgaataac
     4141 cacgggttgc acccgcggtt atttacataa aagtccgaag gacttttaaa acaagccact
     4201 ttctttaatt tgacaatagt catgtcgaac tcacgttaat tatatacttt tgatgcataa
     4261 agtgaagcgc tatacttctg gattagaatt ttgagcagga tctgagcaaa cataaaaaac
     4321 ggctgatctg aattactcag gtcagccgtt tttgcgtgat gttgattatt gaaaccctgt
     4381 ttttatacca tcagtttttt gtaacggata cgtttcggag cttcgtcgcc cagacgcatt
     4441 ttcttgtttt cttcgtattc ggagtatgaa ccttcgaaca caaatacttc ggagttacct
     4501 tcgaatgcga taatgtgcgt acaaatacgg tcgaggaacc aacggtcgtg ggagattacc
     4561 acggcgcaac cggcaaaagc ttccagccct tcttccaatg cacgcaaggt gtttacgtca
     4621 atatcattgg tcggctcatc gagtagcaat acgttggctt ccgattttaa cgtcagtgcc
     4681 aggtgcaggc ggtttcgctc accaccggac agcacgccgc agagtttttc ctggtcgcca
     4741 cctgcaaagt tgaagcgcga aaggtatgca cgggcattga tttccctgcc gcctacgcgg
     4801 ataaattccg ttccgcccga aatgacctga tacacggttt tctccggatc aatgtcggca
     4861 tggctctggt ccacataacc gatttttacg gtttcaccca cttcaaatgt tcccttgtcg
     4921 gctttttcaa ttcccatcat catgcggaaa agtgttgttt taccggcacc attcggtccg
     4981 ataataccca caatgccatt tggaggaagc atgaagttga ggttgtcgaa caagagttta
     5041 tcgccaaacg ctttggaaac atcaatggct tccactactt tatttccaag gcgtggccca
     5101 ttcggaataa agagttcgag tttttcttct ttttcgcgtt ggtcttcgtt tatcaacttg
     5161 tcgtaagctt ccagacgggc tttccctttg gcatggcgtg ctttaggggc catgcgaacc
     5221 cattccaact cacgttccaa cgttttgcgg cgcttgctgg cttgcttttc ttcgccggcc
     5281 atacgggctg tcttttgctc cagccacgag gtgtagttgc ctttccatgg gatgccttcg
     5341 ccacggtcga gctccaggat ccatcccgaa acattatcga ggaagtaacg gtcatgggta
     5401 atggcaataa cggttccggc atattgttgc aggtggtgtt ccaaccattc caccgattcg
     5461 gcatcgaggt ggttggtagg ctcatcgagc aacaggatgt caggattgcg gagcaacagg
     5521 cggcacaagg ccacacggcg gcgc
//
LOCUS       DATDNM010000116         2149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_121819, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000116 DATDNM010000000
VERSION     DATDNM010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121819"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..338
                     /locus_tag="VI413_01960"
     CDS             <1..338
                     /locus_tag="VI413_01960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenine deaminase C-terminal domain-containing
                     protein"
                     /protein_id="HEY6913412.1"
                     /translation="SHNIVAVGTSDEEIASAINQIIDSKGGILACVGEITCLLPLPVG
                     GTMSDAEGHVIAQRYEEIDAMAKELGSTLHAPFMTVAFMSLLVIPELKLGDRGLFDGR
                     IFEFVDLME"
     gene            446..1138
                     /locus_tag="VI413_01965"
     CDS             446..1138
                     /locus_tag="VI413_01965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913413.1"
                     /translation="MKHIILGFFISIFFISEAQTKSAEKPVLNTLEDFFRFENVEQLT
                     SYFGTKNVFSETVYFSDPSNGGKPYLVSEVNFGTAQSILVTWNSKGTEIFQVQVSSYF
                     QDRETGKMRMISNNWKTKQGLYAGMKLSQITRINWFPFSFNTQLNKGVENKGEILLHF
                     GWIKKDIKVPFSSQKLVYSYTLDLKRISDYFPQLSALTLKSNNKLVRKWNPTLELITI
                     YREGLNPQNVSK"
     gene            complement(1193..>2149)
                     /gene="gap"
                     /locus_tag="VI413_01970"
     CDS             complement(1193..>2149)
                     /gene="gap"
                     /locus_tag="VI413_01970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEY6913414.1"
                     /translation="VFRAAQERNDVQIVAVNDPFMDIDYMVYMLQYDTVHGRFQGTAE
                     HKDGKLVINGKEIAFFAEKDPANIGWGAVGADYVVESTGVFTTIDKAGLHLKGGAKKV
                     VISAPSNDAPMFVCGVNLNEYKADMNVVSNASCTTNCLAPLAKVINDNFGIVEGLMTT
                     VHAATNTQKTVDAPSAKDWRGGRSILGNIIPSSTGAAKAVGKVIPALNGKLTGMAFRV
                     PTADVSVVDLTVRLEKAASYDEIKAAVKLASETTMAGVLGYTEDSVVSTDFVHEVRTS
                     VFDAGAGIALNGNFVKLVSWYDNEWGYSNKVLDLIAHMDSVK"
BASE COUNT          679 a          394 c          420 g          656 t
ORIGIN      
        1 atagtcataa cattgtggct gttggtacat cggatgagga aattgcttca gccataaatc
       61 agattataga tagtaaagga ggtattttgg cttgtgttgg tgaaattacc tgtttgttgc
      121 ctttgccggt tggtggcact atgtctgacg ctgaaggcca tgtgattgcg caacgctacg
      181 aagaaattga tgctatggca aaagagcttg gatcgactct acatgctcct tttatgacgg
      241 ttgcttttat gtcattgctc gttattccgg aacttaaatt gggagacagg ggtttatttg
      301 atgggcgaat atttgaattc gttgatttaa tggaataatg tcttaaatat atcaggtata
      361 aaacgagcat gaacgagggc gtttaaaccg gaggccatgt tcattgtgag ttccatacga
      421 ccttaaaaaa aacaattatt atcgtatgaa acatataatt ttaggctttt ttatttccat
      481 cttttttatt tccgaagcac aaacgaaatc agccgaaaag ccggttctga atacattgga
      541 agactttttt cgtttcgaaa atgtggagca gttgacttct tatttcggaa caaaaaatgt
      601 attttctgag actgtctatt tttctgaccc ttcgaatggt ggaaagcctt atttggtctc
      661 agaagtgaat tttggaactg cacaatcaat attggttacc tggaatagca aaggaactga
      721 aatatttcag gttcaggtaa gtagctattt tcaagatcgt gaaacgggga aaatgagaat
      781 gatttccaat aattggaaaa caaagcaagg gttatatgca ggtatgaaat tatctcaaat
      841 tacaagaata aattggtttc cgttttcatt caatacgcaa ctgaataaag gcgtcgaaaa
      901 taaaggagag attcttttac atttcggttg gattaaaaaa gatataaaag ttcctttttc
      961 gtctcaaaaa ctggtttata gctatacatt ggacttgaaa cgcataagtg attacttccc
     1021 gcaactttct gcattaaccc tgaaaagcaa taataagtta gtcaggaagt ggaatcccac
     1081 gttggagtta attacgattt atcgggaagg gttgaatccc caaaatgtca gtaaataaaa
     1141 aaatcccttg caacttaatg ttacaaggga tttttgaaat tataaggtca acttatttta
     1201 ctgaatccat gtgtgcgatc aaatctaaca ctttgttaga ataaccccac tcattgtcat
     1261 accagctaac taattttacg aagttaccgt tcaatgcgat acctgcacct gcatcaaata
     1321 cagaagtacg tacttcgtga acgaagtctg tagatactac tgaatcttca gtgtaaccaa
     1381 gaacaccagc cattgtagtt tcagaagcta attttacagc agctttgatt tcgtcgtaag
     1441 aagcagcttt ttccaaacgt acagttaagt caactacaga aacgtcagca gttggtacac
     1501 ggaaagccat accagttaat ttgccattca aagcaggaat tactttacct acagctttag
     1561 cagcaccggt agaagaaggg ataatatttc ctaaaattga acgaccacca cgccagtctt
     1621 ttgcagaagg agcatcaact gttttttgag tgttagtagc agcgtgaact gttgtcatca
     1681 aaccttcaac gattccgaag ttgtcattga taactttagc caaaggagcc aaacagttag
     1741 ttgtacaaga agcattagaa actacgttca tgtcagcttt gtattcgttc aagtttacac
     1801 cgcaaacaaa cataggagca tcgttagatg gagcagagat aactactttc tttgcaccgc
     1861 ctttcaagtg aagacctgct ttgtcgatag tagtgaaaac accagttgat tcaacaacat
     1921 agtcagcacc tacagcaccc caaccaatgt tagctggatc tttctcagca aagaatgcaa
     1981 tttctttacc gttgataacc aatttaccgt ctttgtgttc agctgttccc tggaatcttc
     2041 catgaactgt gtcatattgc aacatgtaaa ccatgtaatc aatatccata aatggatcat
     2101 ttactgcaac gatctgaaca tcgtttcttt cttgagctgc acggaaaac
//
LOCUS       DATDNM010000117         2909 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1509444, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000117 DATDNM010000000
VERSION     DATDNM010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2909
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1509444"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..280
                     /locus_tag="VI413_01975"
     CDS             <1..280
                     /locus_tag="VI413_01975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913415.1"
                     /translation="AAPFTSGSTQLVWGLGVGNVDFYVDNITFSGIESAATDTKDIFE
                     DNASVVATEYYTITGQRVINHRNNLKGVFIVRYILSNGKVKTIKALYL"
     gene            397..>2909
                     /locus_tag="VI413_01980"
     CDS             397..>2909
                     /locus_tag="VI413_01980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009131177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase 115 family protein"
                     /protein_id="HEY6913416.1"
                     /translation="MITNGSCFSNLRRKLITGVFFLLITFNAFTQQIGLIPGVIIEKA
                     LTEADFPIVSTSRSVASIRYDVNEYKGVVRAIGDLQNDIDSVTGYKPEILSSGLSTGY
                     EIVVGTVGKSKLIDQLIASKKLDAKDLKGKWESFVLATIKDPKPGVKQCLVIAGSDKR
                     GTIYGIYELSRQLGVSPWYWWADVPAIKRSSAYVRAGRYASGEPKVKYRGIFINDENP
                     CMQRWARGKFAGMNSKMYTHIYELLLRLNANLLWPGMWGSFKEYKPLIPLLKNEDGSY
                     EGNSFNDDDPDNPRLADEYGIIMGTSHHEPMQRSQQEWIRNKSKYGNGEWNYVTNKAG
                     IQQFFRDGIEHTKNYESLITMGMRGDEDRPMVDAGSAEANFKVLEGIMRDQRKIIEDV
                     TGKPAAKTPQVWTLYSEVLDYFDQGMKVPDDMIILLCDDNWGHVRRLPDLNGKKHPAG
                     YGMYFHAGYYGAPRACKWLNVTQIQQMWEQLQLSYNYGVDKLWILNVGHLKPNEYPMD
                     FFLKMAWNPIAFNENNLTDYSQKFCTQQFGEQQADEAANILNTYCKYASRVTPEMMDD
                     KTFSLETGEFKMVKDEFISLEARALRQFLALPASYHDTYKELVLYPVQGLSNLYDLYY
                     SVAMNRKLAADKNISANSLADHAELCFKRDSLLYSDYNHNIAGGKWNHMMDQVHIGYT
                     SWHGPQFNIMPEVKRINPNEAKQGGYVFAEKSGVVVMEAEHYFDAKPGVNTKWTVFPD
                     QGRMLSGIALMPYTKATDGASVSYKMSLKAKQDSVTVRIIFESTMPFVKGGHNVAVSF
                     DGGTKKVINLNKDFTWKNNYSKMYPTGAARIIETVTTLQ"
BASE COUNT          882 a          541 c          684 g          802 t
ORIGIN      
        1 agctgctccg ttcacttcag gttctactca acttgtatgg ggactgggtg ttggaaacgt
       61 tgacttttat gtagacaata taaccttctc cggaatagaa tcggcagcaa cagatactaa
      121 agatattttt gaagataatg cttcagttgt tgcaaccgaa tattatacca ttacggggca
      181 gcgggtgata aatcacagaa ataatttaaa gggtgttttt attgttcgat atattttgtc
      241 taatggtaaa gttaagacta taaaagcttt gtatttgtga taataagtag ataagaatta
      301 tttatagttg caacatgtta gccattacac ctcttttccg ggggtgtaat ggtattgttg
      361 ttttttgtag tatttatcca aaacattatt ttttgtatga taacaaacgg aagttgtttc
      421 tcaaatcttc ggcggaaatt gattactgga gttttttttc tccttattac gttcaatgcc
      481 ttcactcaac agatcggttt gattcccgga gtgataattg aaaaagcact aaccgaagcc
      541 gattttccaa ttgtcagcac aagtcgctct gtggcatcta ttcggtatga cgtaaatgag
      601 tacaaaggcg ttgttcgtgc cattggcgat ttgcaaaatg atattgacag tgtaacagga
      661 tataagcctg agattttgag ctccggattg tcaaccggat atgagatagt agtgggtaca
      721 gttggaaaaa gtaagttgat tgaccaactg atagcttcta aaaagctgga tgcaaaagat
      781 ctgaaaggga aatgggagag ttttgtgttg gcaacaataa aagatccgaa accgggtgta
      841 aagcaatgtt tggtaattgc aggtagcgac aagcgcggaa ccatttacgg aatatacgaa
      901 ctttcccgtc agttgggcgt gtcgccctgg tattggtggg ccgatgttcc tgctataaaa
      961 cgatcttcag cctacgtcag agccggtcgt tatgcttcgg gtgaaccaaa agtgaaatac
     1021 cgcggaattt ttattaacga cgagaaccct tgtatgcaac gttgggcacg cgggaaattt
     1081 gctggcatga acagcaaaat gtacacgcat atatacgaat tgcttttgag actaaatgcc
     1141 aatctgcttt ggcccggcat gtggggatcg ttcaaagaat ataaaccatt aattccgctg
     1201 cttaaaaatg aagatggtag ttacgaagga aattcgttta acgacgatga ccccgacaat
     1261 ccccgtttgg ccgacgaata tgggataata atgggaactt cgcaccacga acccatgcag
     1321 cgctctcagc aggaatggat tcgtaataaa tcgaaatatg gcaacggtga gtggaactat
     1381 gtgaccaata aggctggaat tcaacagttt ttccgggacg gcattgaaca taccaaaaac
     1441 tacgagagcc tgattaccat gggaatgcgt ggcgacgaag acagacccat ggtggatgcc
     1501 ggaagtgcag aagcaaactt caaagtgttg gaaggcatta tgcgagatca gcgtaaaata
     1561 attgaagatg ttaccggaaa acctgccgct aaaacgccac aagtgtggac gctttacagc
     1621 gaagtgctcg actattttga tcagggcatg aaagtgcccg acgacatgat tatattgcta
     1681 tgtgacgata actgggggca tgtgcgtaga ttacctgatc ttaatggtaa aaaacaccca
     1741 gcaggttacg gaatgtattt tcatgccggt tattatggtg ctccacgcgc atgtaaatgg
     1801 ctcaatgtta ctcagattca gcaaatgtgg gagcagcttc agttaagcta caattatggg
     1861 gtggataaat tatggatact caatgttggt cacttaaaac cgaacgaata tccaatggat
     1921 ttcttcctga aaatggcctg gaatccaata gcattcaacg agaacaacct gactgattat
     1981 tcgcaaaaat tctgtacgca acagtttgga gagcagcagg ccgatgaagc tgcaaatatt
     2041 ctgaatacgt attgtaaata tgccagtcgc gtgactcccg aaatgatgga tgacaaaaca
     2101 tttagtctgg aaacaggaga gttcaaaatg gtaaaagatg aatttatttc gctcgaagcc
     2161 cgtgcgctca ggcaattttt ggcccttcct gcgagctatc acgacacgta caaggagctt
     2221 gtactctatc ccgttcaggg gttgtcaaac ttgtatgatt tatattactc ggttgctatg
     2281 aaccgcaaac tggcggcaga taaaaatatt tcggcaaatt ccttggccga tcatgccgaa
     2341 ttatgcttta agcgcgattc gttattatat tccgattaca atcataacat tgctggtgga
     2401 aaatggaatc atatgatgga tcaggtgcac attggttata cctcctggca cggtccgcaa
     2461 ttcaacatta tgcctgaagt aaagcgaatt aatccaaatg aagctaaaca aggcggatat
     2521 gtctttgccg aaaagagcgg tgttgtggtg atggaggccg aacattattt cgacgctaag
     2581 ccgggtgtaa acaccaaatg gacggttttt cccgatcagg gacgaatgct ttcgggaatt
     2641 gcgctgatgc cttatactaa agctactgat ggtgcttcag tttcctataa aatgagtctc
     2701 aaagcaaagc aggatagtgt gacagtcaga attattttcg agagtacgat gccatttgtg
     2761 aaaggtggac acaatgtggc tgtctcgttc gacggtggca ctaaaaaagt aataaatctc
     2821 aataaagatt ttacatggaa aaacaactat tcaaaaatgt accctaccgg cgctgcgcgg
     2881 ataatcgaga ctgtcacaac attgcaatt
//
LOCUS       DATDNM010000118         2338 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_868513, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000118 DATDNM010000000
VERSION     DATDNM010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_868513"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..580)
                     /locus_tag="VI413_01985"
     CDS             complement(<1..580)
                     /locus_tag="VI413_01985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913417.1"
                     /translation="MKKSILFLSLIAAFSCKAQQAANTAEKINDSNTPLHLMKPEYKT
                     PYGVAKPEEVKAVIDRILVFLEKATPTKVINKDTKVEITDFSKIDKNSLLERGQFRLA
                     SYEWGVTYAGMLLAAETSGDARYSKYVSDRFSFFASVAPYFEKLRKEGIVDPQMRQIL
                     HPEALDDAGAVCSAMIKAQIARIKFNGRPLIDN"
     gene            complement(664..2127)
                     /locus_tag="VI413_01990"
     CDS             complement(664..2127)
                     /locus_tag="VI413_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010536729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 28 protein"
                     /protein_id="HEY6913418.1"
                     /translation="MKKHIFLLLMLVSVQIQATTIFNIRDFGAKGDGKTIDSPAINAA
                     IDAATQTGGGTVVFPAGIYASYSVRLKSNICLQLEAGAILLAATPGENAGYDPAEPNE
                     FNKFQDFGHSHWQNSLIWGENLENVTICGQGLINGAGLTRAEKYKSGIGNKAISLKLC
                     RNVILRDLKMLMCGHFALLATGVDNMTIDNLTIDTNRDGLDIDCCRNVRVSNCTVNSP
                     WDDAIVLKASYGLGFFRDTENVTITNCFVSGFDKGTLMDGTNQRNDPQAPDKEFVTGR
                     IKLGTESSGGFRNIAISNCVFERCRGLALETVDGGVLEDIVVSNITMRDIVNSPIFLR
                     LGARMRSPENTPVGKMRRISIDNVNVYNADSRFGCVISGMPDNYIEDVKLSNIRIRYQ
                     GGGTAEQAKVLVPENEKDYPEPSMFGPIPSSSFYIRHVKNIELSGIDISFVTPDFRPS
                     IQLDDVKSSEFRNIKINQPNAPKLFKLINSDKPIVYK"
BASE COUNT          650 a          526 c          453 g          709 t
ORIGIN      
        1 agttatcaat caacgggcga ccattgaatt taattctggc aatctgtgct tttatcatag
       61 ccgaacaaac cgcaccggca tcgtccagcg cctcgggatg aagaatctga cgcatttgcg
      121 ggtccacaat tccttcttta cgcagttttt cgaaataagg agccacactg gcaaaaaaac
      181 taaagcggtc ggaaacgtat tttgaataac gggcatcccc cgaagtttct gcagcgagta
      241 acattcctgc ataagttacg ccccattcgt aactggctaa gcgaaactga ccacgctcga
      301 gcagtgagtt tttatctatt ttgctgaagt cggttatttc aactttggtg tctttattga
      361 taactttggt aggagtggct ttttcaagaa aaaccaatat tcggtcaata acggccttta
      421 cttcttcggg tttggcaact ccataaggcg ttttgtattc cggcttcata aggtgaagcg
      481 gcgtgttcga gtcgtttatt ttttcggccg tattggctgc ttgctgagct ttgcacgaga
      541 acgctgcaat tagagataga aataagattg attttttcat tgttttaata tagtaagttg
      601 caaaattaga gctataagac tcaagttcca cttaaaaata tgagcaaaaa ggtgtttgtt
      661 ttgtcatttg taaacaatcg gtttatcact atttatcagt ttgaataact ttggtgcatt
      721 gggttgattt atcttgatat tcctgaactc agaacttttc acatcgtcca gttgaataga
      781 cggtcgaaaa tcgggagtta caaagctgat atcaataccg gataattcga tattctttac
      841 gtgacgaata taaaatgacg atgacggaat cggtccgaac atggatggtt ccggataatc
      901 tttttcgttt tcagggacaa gtactttagc ctgttcagca gttcccccac cctgataccg
      961 aatacggata ttgctcagtt tcacatcttc aatgtaatta tcgggcattc cactaatcac
     1021 gcaaccaaaa cgtgaatcgg cattatacac atttacatta tcgatgctga ttcgtcgcat
     1081 tttaccaaca ggcgtatttt caggactccg catgcgcgcg ccaagccgaa gaaaaatagg
     1141 cgaattgaca atatcgcgca tggtaatgtt agaaacaaca atatcttcta aaacaccacc
     1201 gtcaacagtt tcgagagcta gtccacggca acgttcgaaa acacagtttg aaatggcaat
     1261 gttgcgaaat ccgccgctcg attcagtgcc caacttaatt ctacctgtta caaattcttt
     1321 atcgggtgcc tgcggatcat tccgttggtt tgttccgtcc ataagcgtac ctttatcaaa
     1381 accacttaca aagcaattgg ttattgttac attctcggtg tccctgaaaa atccaagtcc
     1441 gtaggatgcc ttcagaacta tcgcatcgtc ccagggcgaa ttcaccgtgc agttagaaac
     1501 ccgaacgttc cggcagcaat ctatgtcgag tccatctctg ttggtatcaa ttgtcagatt
     1561 gtcaatagtc atattatcaa cacctgttgc cagcaaagca aaatgcccgc acatcaacat
     1621 tttcaggtca cgcaaaatta cattcctgca aagcttcagg ctgatagcct tgttgcctat
     1681 tcccgacttg tatttttcag cgcgtgttaa tccggctcca ttgattaacc cttgtccgca
     1741 aatagtcaca ttttcaaggt tttcacccca tatcaaacta ttctgccaat ggctgtgtcc
     1801 gaaatcctgg aatttattga attcatttgg ttcagccgga tcgtacccgg cattttctcc
     1861 aggagttgct gccagcaaaa ttgctcctgc ttccaattgc aaacagatat tgcttttcaa
     1921 ccggactgaa tagcttgcgt atattcctgc cggaaaaaca acagttccac caccagtttg
     1981 cgtagcagca tcgatagcag cattaatagc cggcgaatct atggtttttc catcaccttt
     2041 agctccaaag tcacggatat taaagattgt ggttgcctga atctgaacag acacaagcat
     2101 cagcaaaagg aaaatgtgtt ttttcatcaa ttaatttgga acatttaaag tttaatgcga
     2161 atcaggagtt gaaatctagc aacctaattg ggtttcgcgg tttgtaacca cgttattaaa
     2221 gcttataccg cggttacaaa ccgtgaaacc cctctctatt acaaatgttt acttcaatgc
     2281 ctttctcaat ttcttcaact gtttatcttt cgaagcctta ataccttctg caactgtc
//
LOCUS       DATDNM010000119         2640 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_762090, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000119 DATDNM010000000
VERSION     DATDNM010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_762090"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(204..386)
                     /locus_tag="VI413_01995"
     CDS             complement(204..386)
                     /locus_tag="VI413_01995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913419.1"
                     /translation="MKRSFSVFFLFTFFVCSIFATSEIPTVVYPKPAPPFPRIVSVSS
                     QNQALPLASVTIPETK"
     gene            669..2321
                     /locus_tag="VI413_02000"
     CDS             669..2321
                     /locus_tag="VI413_02000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913420.1"
                     /translation="MSFRNIIFILLSCFAFAACKPGYTKNETILQAESILYSHPDSAY
                     RLLSSIRNPEKLSEADYAAWCLHYTHAQYKLYMDIKSDSLINIAISYFNKTKLVEYNG
                     TAYYLAGCIAQMHQDNKRAMSAYKRAADLFEKTKNEDLKGLNYFKIGHIYFQDNLYNQ
                     SLIYFKKTIICFTHSGNKQYLAYSYRLMADLYDIMKYPFRNVISSIDLAIKLSKEAGD
                     STNYYSNIARKGELLFKTDYQESKRLLLLGYNFIPGNRCEIAVFLSLVYSQLNMNDSA
                     RYYLNITLPDSISLNKSLICLAGAYVARGEGNHDQAFHYLEKAHVLNDSSFQRSTRNQ
                     LYRIDKQYDLTEKQKENAQLKIANQQKVIIIIGLTLIVLAIMYILLLLRSRHKHIQAK
                     LELENQRLEFENETKRMENEQKRNLLVAKLKNKIENTLQFNRLKMGFQDADKHDEFIK
                     EIARQAIISENEWKYYTDEVNHLFDNKINELKTKITLLTPLDLIVISLICLDIDITNA
                     CSLLDMSSNTMYTRRVRLKSKIGIAKEVDLEKWVKQNVAVYA"
BASE COUNT          918 a          447 c          469 g          806 t
ORIGIN      
        1 tgccgttagt gtggctgaaa taagattttg tgccatagct caattctttt ttaattgttt
       61 ataaaaattt tagagaaata tcagtagatg aatagcggta cagttaaacg aagattagtt
      121 cactatcact agactcaaaa attggactgt accgctattt tagtttgaat gagaggcttt
      181 acaattccca acccctgtag tgactattta gtttcaggga tagtgacgga agcaagtggc
      241 aaagcctgat tttgggaaga aacagaaaca atacgtggaa aaggtggtgc tggctttggg
      301 tacacaacgg taggtatttc tgaagttgca aaaatactac atacgaaaaa tgtaaaaagg
      361 aaaaatacag aaaaagaacg tttcataaaa tttagttttt aatagttttg attagctgca
      421 ataattttgt tatttttgct atcaaagtta gcctaagcat ttttagaatg caaaaattac
      481 attcgtacat caggcaaaac cgaattttat aaactgttga ttttcagagg ctagttttac
      541 tataaaaaac taatattcgt acatgcattt acattgttcc aaaacagcct gtatttaaca
      601 aaccgttttg ggcaaaatca aggatagtgg atatttcttt tatctattgc ttaaaaccta
      661 tttaatctat gtctttcagg aatattattt tcattcttct cagctgtttc gcatttgctg
      721 catgtaagcc cggttatact aaaaatgaaa ctatccttca ggctgaatcg attctttatt
      781 cacatcccga cagcgcctac cggttactat cttctatcag aaatccggag aaactttcgg
      841 aagccgatta tgctgcatgg tgcttgcact atacacatgc gcagtacaag ctgtatatgg
      901 acattaagtc tgatagcctg atcaatattg ctatcagcta ctttaataaa actaagttag
      961 ttgagtataa cggtacggca tattatctgg caggttgcat tgcccaaatg catcaggata
     1021 ataaacgggc tatgtcagct tataagcgag ctgctgattt attcgagaaa acaaaaaacg
     1081 aagatttgaa aggattaaat tatttcaaga taggccatat ctattttcag gataatttat
     1141 acaaccagtc tttaatctat ttcaaaaaaa ccataatatg ttttacacat tccggaaaca
     1201 aacagtatct tgcttactca tacagactca tggctgatct atatgacata atgaaatatc
     1261 cttttagaaa tgttataagc agtattgatt tagcgattaa actatcaaaa gaggccggtg
     1321 attcaacaaa ttattacagc aacattgccc gaaaaggaga attattattt aaaacagact
     1381 atcaggaatc caaacgattg ttactattag gatataattt tatacctggc aacagatgcg
     1441 aaattgcggt ctttctttca ttggtatatt ctcaattgaa tatgaatgac tctgccagat
     1501 attacttaaa tatcacctta cctgattcca tatctttaaa caaatctttg atttgtctgg
     1561 ccggtgcgta cgttgcaagg ggagaaggta atcatgatca ggcatttcat tatttagaaa
     1621 aagcacatgt attaaatgat tcctcttttc aaagaagtac ccgtaatcag ctttaccgca
     1681 ttgataaaca atatgatttg acagaaaaac agaaagaaaa tgcacagctg aaaatagcga
     1741 atcaacaaaa agtgataata atcatcggac taacactgat tgtacttgca ataatgtata
     1801 ttctgttgtt gcttagaagc cggcataagc acatacaggc aaaactggaa ctggaaaacc
     1861 aaaggctgga gtttgaaaat gaaaccaaaa ggatggaaaa cgaacaaaag cgcaatttgt
     1921 tggtggcaaa actcaaaaat aagattgaaa atacactcca gtttaaccgc ctgaaaatgg
     1981 gctttcagga tgccgataaa cacgatgaat ttataaaaga aattgccagg caggctatta
     2041 tttccgaaaa tgaatggaag tattacaccg atgaagtaaa tcacttgttc gacaataaaa
     2101 taaatgaact gaagaccaaa attaccttgc tcacaccgct cgatttaatc gttatctcgc
     2161 ttatttgcct ggatattgat attaccaacg cttgcagctt gctggatatg agttcaaata
     2221 caatgtatac ccgcagggta agattaaaaa gcaaaatagg aatagctaaa gaagtggatt
     2281 tggaaaagtg ggtgaagcaa aatgttgccg tgtacgcgta atggcgcaaa ccttattctg
     2341 ccaatgtatt atcgtaaatt tccagcaaat tttgcttatt gcctaataca agttggcagt
     2401 tccggacaga aaagaaaaac cgcttacttc cacttttcta aattaaaatt taaaccactt
     2461 aaggcacata agtaaccaca taagcttgat tttccttttc gtattttcac ccaaaagttc
     2521 atataagttg tcttacttat gttttcttat gtagcttatg tggtggaatc ttcttttata
     2581 ttcgttaggt tagtaactcg cacacagaac acacagatta aatggagaag caccgaatat
//
LOCUS       DATDNM010000120         2168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_442214, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000120 DATDNM010000000
VERSION     DATDNM010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442214"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1808)
                     /locus_tag="VI413_02005"
     CDS             complement(<1..1808)
                     /locus_tag="VI413_02005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013616304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase family protein"
                     /protein_id="HEY6913421.1"
                     /translation="MSEFKAGNWQENIDVRDFVTRNITPFDGDESFLSKPTERTLHLW
                     KICLEAIKEERDRNGVRAIDNETISTIVSHAAGYIDRESELIVGLQTDMLLKRAMKPY
                     GGIAVVEKACSENGLEASPIVKEIFTKYAKTHNDGVFDVYTSEIRTFRSVGILTGLPD
                     NYARGRIIGDYRRLALYGTVRLIEGKKEDLKGLTGPMSDERIRLREEVAEQIKALKHI
                     QELGQSYGLDLSRPAENAREAVQWVYMGYLAAVKEQDGAAMSLGNVSSFLDIYIEKDL
                     KTGLITEEYAQELVDQFVMKLRMVRHLRMDAYNEIFAGDPTWVTESIGGTMADGRHKV
                     TKTSYRFLQTLYNLGPSPEPNMTVLWSQRLPEPFKLFCSKVSIDTSSIQYENDDLMQS
                     TRCSDDYGIACCVSYQEIGKQIQFFGARCNLAKTLLLAINGGRCEISGKKVINGVPDL
                     KSDVLDFDEVMENFHIAMREVSRVYAEAMNIIHYMHDKYYYEKAQMSLIDTNPRINIA
                     YGAAGLSIVADSLSAIKYAKVTVVRNEQGVSHEFKIAGDFPYYGNDDDRVDVFAQEIP
                     TYFDKMLKEHATYKNAEHTLSILTITSNVVYGKKTGA"
BASE COUNT          628 a          490 c          402 g          648 t
ORIGIN      
        1 gcacctgttt tctttccata taccacgttc gaagtaattg tcaggatact cagtgtatgt
       61 tctgcatttt tgtaagtagc atgttccttc aacatcttat cgaaataagt tggaatttcc
      121 tgtgcaaata catctacgcg atcgtcatcg tttccataat atgggaagtc accagcaatc
      181 ttaaattcat gcgaaacgcc ctgttcattg cgaacaactg ttactttcgc atatttgata
      241 gccgacaatg agtcagccac aatactcaga cctgcagcac cgtaagcgat attaatacgc
      301 ggattggtat caatcaacga catttgggct ttctcgtaat agtacttgtc gtgcatgtag
      361 tgaataatgt tcatcgcttc ggcgtaaaca cgtgaaactt ccctcatagc aatatggaaa
      421 ttttccatta cttcgtcaaa atccaaaaca tccgatttca gatcgggaac accgttgata
      481 accttctttc ctgaaatttc gcaacgaccg ccgttaattg ccaaaagcag tgttttagcc
      541 aggttacaac gcgctccgaa gaactgaatt tgctttccga tttcctggta agaaacacag
      601 caggcaattc cgtaatcgtc gctgcaacga gtgctttgca tcaggtcatc gttttcgtac
      661 tggatagacg aagtatcgat agacactttt gaacagaaca atttaaacgg ctcgggcaag
      721 cgttgcgacc aaagcacagt catgtttggt tcaggtgatg gtccgaggtt gtaaagtgtt
      781 tgaaggaaac gatacgaagt tttggttact ttatgacgac catcggccat cgttccgcca
      841 atcgattcag ttacccaggt aggatcaccg gcaaaaatct cgttgtaagc atccatgcgc
      901 aggtggcgca ccatacgcaa cttcattaca aactgatcca ccagttcttg tgcatattct
      961 tcggtaatca gtcctgtttt caggtctttt tcaatataaa tatcgaggaa tgacgatacg
     1021 tttccaagcg acatggcagc accatcctgc tctttcacag ccgccagata acccatataa
     1081 acccattgta cagcttcacg ggcattctca gccggacgtg ataaatccaa tccgtaagat
     1141 tgtcccaatt cctgtatatg tttcagggct ttaatttgtt cggccacctc ttcgcgcaaa
     1201 cggatacgct cgtcgctcat tgggcctgtc aatcctttca ggtcttcttt tttaccctca
     1261 attaagcgga cagttccata aagtgccaac cggcgataat caccgataat acgtccacgg
     1321 gcatagttat cgggtaatcc cgtaagaatt ccgacactac gaaaagtacg aatttcagaa
     1381 gtataaacat caaatacacc atcattatgc gttttggcat actttgtaaa aatctcctta
     1441 acgattggtg atgcttccag gccattttcg ctgcacgctt tttccaccac ggcaatacca
     1501 ccataaggtt tcatggcacg tttgagcagc atatcagtct gtaatccaac tatcagctcg
     1561 ctttcgcggt cgatataacc ggctgcatgc gacacaatgg tagaaatagt ttcattgtcg
     1621 atagcacgaa caccatttct gtcgcgttct tctttaatcg cttccagaca aattttccac
     1681 aaatgcaatg ttcgttcagt tggcttgctc aggaaagact catctccgtc gaacggggta
     1741 atgttgcgtg ttacaaaatc acgaacatcg atattttcct gccagttgcc agctttaaat
     1801 tcactcataa aaaaagggtt ttgtttatat taaagtatta aattattatc taatgaaatc
     1861 cgttttgcgg tgcaaagtta ctgaaggttt caattgcaac caacaaaata ctgcaaaaaa
     1921 tatgtttttt agcatgtttt tgtccacttt tgaccatttt gaagcttttt atcagaaacc
     1981 agtatttaca ttttgtcaga aaatgtactg attataaata attattgaaa aactacattt
     2041 caaatcgtca aagaagtttc ggaaaacttc ggtgcaaaga tagggcattc ctgccgaaca
     2101 aattgtaaca tctgttacac aaaaaaatac cgactaaaga cattgtttat ataaatatca
     2161 ttttacaa
//
LOCUS       DATDNM010000121         2264 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_335035, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000121 DATDNM010000000
VERSION     DATDNM010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335035"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1089
                     /locus_tag="VI413_02010"
     CDS             <1..1089
                     /locus_tag="VI413_02010"
                     /inference="COORDINATES: protein motif:HMM:NF020337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913422.1"
                     /translation="IANPAYANLLDVDNYIDYMLINYYLGNQDWDKNNWTASRNRITN
                     AEGFKFFCWDAETTMTAIGTNLVSASPTSGNPTAFLQYLKKNPDFLVTMADHIQKQMI
                     NEGGALTPKVAAERYNKLADEIDLAIISESARWGDWYNNTGPYTKNGHWLPRKNALLT
                     TYFPYRTDTVIKQLRTAGYFPTVNAPKFSHNGGTITSAINLGMTTNTGTIYYTVDGSD
                     PRTSITGAIVGSAQTYTGAFSVGSSITVKARAKTSTEWSAIAEATFVYTTPNAVEIPL
                     SEQLACSNYPNPFSESTRIQLTLPYDSDLQLDIYSVDGRLVKQLFKGKAIGGTNQFDW
                     VPGNIESGIYICRITCLGQSSYLKLLKK"
     gene            1337..1756
                     /locus_tag="VI413_02015"
     CDS             1337..1756
                     /locus_tag="VI413_02015"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6913423.1"
                     /translation="MVTNAIIWNRSEMQLNKFRSSDFTKKIFEIVQKKDFELDLTLDL
                     LADRLCIAKSTLCNKLKKETGLSPIEFVRSVKLHLSVQLMSETELSIKEIAYSTGFND
                     PKYFSRCFKRQFGVTPKEYKVKLSAPMSYKWNYFNLN"
     gene            1931..>2264
                     /locus_tag="VI413_02020"
     CDS             1931..>2264
                     /locus_tag="VI413_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007852566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEY6913424.1"
                     /translation="MFLWLIFSWLPVASAQQPDWENHHILQINREPPRAAFIGYSNNP
                     GDCQLTLNGLWKFHWSPTPEGRTADFFTSSFNDADWKNFPVPANWEVNGYGTPIYVSS
                     GYPFKIDPP"
BASE COUNT          692 a          434 c          466 g          672 t
ORIGIN      
        1 attgctaatc cggcttacgc taatttgttg gatgttgata actatatcga ttacatgttg
       61 attaattact acctgggaaa tcaggattgg gataaaaata actggaccgc aagcaggaac
      121 aggataacta atgctgaagg attcaaattt ttctgttggg atgccgaaac taccatgaca
      181 gctatcggaa ccaatctggt gtcagcaagt cctacttcgg gcaatccgac tgcgttttta
      241 caatacctga agaaaaatcc ggattttctt gtaacaatgg cagatcacat acaaaaacaa
      301 atgattaatg aaggaggtgc ccttactccc aaagtggcgg cagaacgcta caataagctt
      361 gccgatgaaa tagatctggc tattatttcg gaatcagcac gttggggcga ttggtacaat
      421 aatactggcc catataccaa aaacggacat tggttgccac gtaaaaatgc ccttctgaca
      481 acttatttcc cgtatcgtac cgacaccgtt atcaagcaat tgcgtactgc aggctacttt
      541 cctacggtga atgcccctaa attctcgcat aacggcggaa ccattacttc agcaataaac
      601 ttgggaatga ctacgaacac cggtacaatt tattacacgg tagatggttc cgatccgagg
      661 acttccataa caggagcgat cgttggttcc gcacaaactt ataccggcgc tttcagcgtt
      721 ggaagcagca ttacagtgaa agcccgcgct aaaacgagca ccgagtggtc ggctattgcc
      781 gaagccacgt ttgtttatac tactccgaac gctgttgaaa ttccgttgtc ggaacaactg
      841 gcttgcagca attatccgaa tccgtttagc gaatcgacac gcattcagtt gacattgcct
      901 tacgacagcg atttgcagct ggatatctat agtgttgatg gacgattggt aaaacaattg
      961 tttaaaggca aagcaatcgg tggtacaaat cagtttgact gggttcccgg aaatatagaa
     1021 agcggaattt atatctgtcg gataacttgc ctcggacaaa gcagttacct gaaattgttg
     1081 aagaaatagt ttcaaggaaa taaattaaaa actccaaagt atttaaaccg ctttggagtt
     1141 ttttttgtac ttacgcaaag ttgttttcat gtctgtaagc tttaaaaaat acttcgaaaa
     1201 gaaataaatc gttgttttca ttgattgtat tgcttagttt gtgagtcatt aatgacgatt
     1261 ttgtgtatta tccggtgcca taattacgtc tatttttgag ctatcaaaat ttgataaaac
     1321 cttagaattt aagattatgg taacaaatgc aattatttgg aatagatcgg agatgcaatt
     1381 gaataaattc agaagctctg atttcacaaa gaaaatattt gaaatagttc agaaaaaaga
     1441 tttcgagttg gacctgacac ttgatttgct ggcagacaga ctttgtatag caaaatcaac
     1501 tttatgcaat aaacttaaga aggaaaccgg actgtctcca attgaatttg tgcgttcagt
     1561 gaagcttcat ttgtctgttc aattaatgtc cgaaaccgaa ttatcaataa aagaaattgc
     1621 ctattcaacg ggctttaacg atccgaaata tttttccaga tgttttaaaa gacagtttgg
     1681 ggtaactccc aaagagtata aggtgaagtt gagtgcacca atgtcgtata aatggaatta
     1741 ctttaattta aattgattct gttttcagaa gaataagaga aaaaatggtt tttaaggtag
     1801 ctatttgtta atagcaacag aagagacggg gttttaagta atcccgtctc ttctgttttt
     1861 ttttgagtac aacgaggctt tctcaacgtc tttttttaaa gctctacaga tagtgataaa
     1921 aagagaatac ttgtttcttt ggttgatatt cagttggttg cctgttgcgt ccgcccaaca
     1981 gcccgactgg gaaaatcatc atatactcca aattaatcgt gaaccgccac gagctgcttt
     2041 tattggctat tccaacaatc cgggcgattg tcagctgaca ttgaatggtt tatggaaatt
     2101 ccactggtcg ccaactcccg aaggtcgaac tgcagatttc tttacttcca gttttaatga
     2161 tgccgattgg aaaaactttc ccgttccggc caactgggaa gtgaacggtt acggaactcc
     2221 catttatgtg tcgtccggct atccgttcaa aatcgatccg cccc
//
LOCUS       DATDNM010000122         5841 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1723629, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000122 DATDNM010000000
VERSION     DATDNM010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5841
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1723629"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..206)
                     /locus_tag="VI413_02025"
     CDS             complement(<1..206)
                     /locus_tag="VI413_02025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913425.1"
                     /translation="MNLVRGFVLIPVIAICLIPFLKLKGKAIAVYAAVSMIAILTSFV
                     AVKALLGDTFNLTLQGSFISGPIR"
     gene            complement(203..2200)
                     /locus_tag="VI413_02030"
     CDS             complement(203..2200)
                     /locus_tag="VI413_02030"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEY6913426.1"
                     /translation="MIELINLSWITALLAIVALLLVPAKIKAYTAILSVITNSIITSW
                     LAILALTGQIINFNFPGGNLFGDITIRLDELSAWFILIINFTCLTGIFYGIEYLKKQK
                     EPEKRLTLHWILFVLFQASMLWVCMIQHGLVFLIIWEIMSLSSVLLVMFDYHNPKIVK
                     AGINYLIQMHLSIVFLTIGFIWLYFQTGSFSFDAFATYFGTQSNVGLFLVLFIGFGLK
                     AGFIPLHSGLLQGDPAAPSHIAGIMSGVLVKLGIYGIFRVCSFLKSDFLLLGEIVLTV
                     SILTGLFGILNAAVHRNLKKMLAYCTVENIGTIGIGIGIGLIGLGNHSPILYYLGFGG
                     ALLHVLNHSLFKSLLFFSSGSVAQQTGTSDMEKLGGLIKRMPRTAVVFLIAAIGICGL
                     PPFNGFISEFLIYSGLIEGVKIHNTNEMILFSLSLAGLSVIGGLSILTFTKSFGTVFL
                     GNTRKKLPVEPREVSLKMLIPQYVIIALMLSVAILPQFYLQIVGRVLSGLTRSVTVPQ
                     PMEFGNYISIMQNISIYSVLFIGLILGFWGIRSFMLHGKTRAIQTTWSCGYTAPTSKI
                     QYTGKSFSKSLSKMFNFIVIERKQYEELNPGEIFPKERKHASHYHDFFEFRFIHVVTN
                     QLIYAANYFKFIQNGRIQSYVLYGIAFILFIFILTAFNIVL"
     gene            2531..4315
                     /locus_tag="VI413_02035"
     CDS             2531..4315
                     /locus_tag="VI413_02035"
                     /EC_number="1.17.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
                     synthase"
                     /protein_id="HEY6913427.1"
                     /translation="MSKLNQFNYSRRQSDAIQIGSLLLGGTNPVRVQSMANTDTNDIE
                     NSVAQCLRIVEAGGEIVRFTTQGVREAESIGKIHAALREQGCNVPLVADIHFNANAAD
                     VAATHVEKVRINPGNYVGSIKIGDTSDYTDEEFELEYQKIRARFIPFLNICKAHNTAI
                     RIGVNHGSLSERMMNRYGDTSRGMVESCMEFLHICNEENFHNVVISMKTSNTVMMVQT
                     VRLLADEMEKAGLHFPLHLGVTEAGDGEDGRIKSAVGIGALLADGIGDTIRVSLSEDP
                     EFEIPVGRLLVSYTTQRAGHEPIVALENILHSRFEYNRRKTHAVGNVGGENVPVVIAS
                     GDGGFATIPDYILSGGKVLDPSGETYPIYSADTIAALLQDTADKKFLEINYADLTPKL
                     LGLLIEKQDIVVLLYTDHLNGVGDQRAFFHTLLNAGCTVPVILCRNYSEDELQFLQIK
                     AAADLGVMFIDGFGDGILLENKGSISTEAINSVAFGILQASRVRVTKTEFISCPGCGR
                     TMFHLQHVIARIKARTSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKVSLYKKK
                     ECLERNIAEDEAVDKLINLIKVNGDWHE"
     gene            4417..4887
                     /locus_tag="VI413_02040"
     CDS             4417..4887
                     /locus_tag="VI413_02040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913428.1"
                     /translation="MRKILFTLALVASLLGNGLNAQVKGKAIGLRLANEAHGGEISFQ
                     APLGRANRLELDLGFNNWYERYYGYGPGFELTGVYQWVWGLNQIATGLNWYLGLGGTV
                     GTYNPDFGLGIVGQVGLEYNFKIPLQISLDWRPTIFNSYYTYYGGNGLSIRYRF"
     gene            4970..5461
                     /locus_tag="VI413_02045"
     CDS             4970..5461
                     /locus_tag="VI413_02045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913429.1"
                     /translation="MKKIILTLALVLSIAGAVSAQADGQSIGLRLGYPTELSYQKALS
                     NSNRLELGLGFRSYGYGVGSNYSRISLSGVYQWVWDLSSLADGFNWYAGVGASVGYYS
                     YSYMNYTYSALPVSILGQVGIEYNFNIPIRLSLDYRPAFQLNGNGNGFVGDGIALGVR
                     YCF"
     gene            complement(5538..>5841)
                     /locus_tag="VI413_02050"
     CDS             complement(5538..>5841)
                     /locus_tag="VI413_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009275402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HEY6913430.1"
                     /translation="IKEEITATVEILEVFKITKVGTIAGCLVREGKIKRGNKVRIIRD
                     GIVVFTGELDSLKRFKDDVKEVGTNYECGLNIKGYNDIRVGDMVESYEETEVRKTL"
BASE COUNT         1765 a         1062 c         1261 g         1753 t
ORIGIN      
        1 aaccggatgg gtccgctgat aaagctgccc tgcaaagtca gattaaatgt atctccaagc
       61 aatgctttta cagccacaaa acttgtgagg atggcaatca tacttacagc agcatacaca
      121 gcaatggctt ttcctttcaa tttcagaaaa ggaatgaggc atattgctat gacaggaata
      181 agtacgaaac cacggactaa gttcataata cgatgttgaa agctgtcagt ataaagataa
      241 acaggataaa tgcaatgccg tataatacgt aggactgaat gcgtccgttc tggataaatt
      301 tgaaataatt tgccgcgtaa atcaattggt ttgttaccac atgaatgaag cggaactcaa
      361 agaaatcgtg ataatgcgaa gcgtgtttcc gctctttcgg gaaaatctca ccggggttta
      421 attcctcgta ttgcttgcgc tctataacta taaaattgaa cattttgctc aacgatttcg
      481 agaatgattt accagtgtat tgtattttgc tggttggtgc cgtgtagcca caactccagg
      541 ttgtttgtat tgcacgggtt tttccatgca acataaaact tcggatgccc cagaaaccca
      601 gaatcaaacc aataaaaagc actgaataaa tgcttatatt ttgcatgata gaaatgtagt
      661 tcccaaattc catcggttgt ggtacggtaa cactccttgt caggcctgaa agaacccttc
      721 ctactatctg caaataaaat tggggcagaa tagcaacact caacatcaag gcaataatca
      781 catattgagg gataagcatt ttcaatgaaa cttcacgtgg ctcaacaggc aacttttttc
      841 gggtatttcc taaaaatacc gttccaaaag attttgtaaa tgtcagtatg gaaagcccgc
      901 caattacgct caatccggct aaactcagtg aaaacagaat catttcattg gtgttgtgga
      961 tttttacgcc ttcaataagc ccgctgtaaa tcagaaattc ggaaataaat ccgttgaaag
     1021 gcggcagtcc gcaaatgcct atggcagcaa tcagaaacac aactgccgtg cggggcattc
     1081 gtttgataag cccgcccagt ttttccatat cggatgttcc cgtttgttgc gcaacagagc
     1141 cggatgaaaa aaacaatagg gatttaaaca gcgaatggtt taaaacgtgt aagagcgctc
     1201 cgccaaatcc cagatagtat aaaatgggtg aatgattacc caacccgata agcccgattc
     1261 caattccaat cccaattgtt ccaatgtttt caacagtgca ataagccagc attttcttta
     1321 agttgcggtg tactgcagca tttaaaatcc caaataaacc ggtgagtatc gaaacggtaa
     1381 gcactatttc gcccaataat agaaaatcgc ttttcagaaa cgagcatacc ctgaaaatgc
     1441 cataaatccc cagtttgaca agtacgcctg acataatacc cgctatatgc gacggagcgg
     1501 cggggtcgcc ttgaagcaat ccgctgtgca ggggaataaa acctgctttc aggccgaatc
     1561 ctataaacag aaccagaaac agacccacat tactttgcgt tccgaaataa gtagcaaagg
     1621 cgtcaaaact gaacgaacct gtttgaaaat atagccagat aaatccgata gtcaaaaaca
     1681 cgatgctcag gtgcatttga atcagataat taatcccggc tttgacaatt tttggattgt
     1741 ggtagtcgaa catcacaagc aacacagaag ataatgacat aatttcccaa ataataagga
     1801 aaaccaatcc gtgttgaatc atacataccc acagcatgga cgcttgaaac aaaacaaaca
     1861 atatccagtg cagagttagt cttttttccg gttctttttg tttcttgagg tattcaatcc
     1921 cgtaaaaaat gcctgtcagg caagtgaagt tgataataag tataaaccag gccgaaagtt
     1981 catccagtct gatagttata tcgccaaaca gattgccacc cgggaagttg aaattgatta
     2041 tttgtcctgt taaggcaaga atggctaacc aactggtaat tatagaattt gtgattactg
     2101 aaaggatggc tgtataagct ttgattttgg cgggtacaag cagcagggca acaattgcca
     2161 gcagcgctgt tatccaactc aaattaatca actctatcat aaaaaataag ctttgtttga
     2221 ttgcaaaatt acggtaaaat aagagaaaat gttcaaaaaa tgtatatttt cttatttttt
     2281 ctttgtcaat tcacagtcaa ttaaggcttt aagtatcttg tgtttacctg taaaaaagta
     2341 tatattttgt gtttttgtaa gttcgctgta tttttattct gggatatatg ccgtatttaa
     2401 aaataattaa caacatggaa ataacttttt aggttcgtca acgttacatt ctcaaaaaag
     2461 tgtaatttta cactctctta aaaattaaat aaatcttgta acctcaaatt aatgtccgga
     2521 actttataaa atgtcaaaac taaatcaatt taattatagt cgccgtcagt cggacgcgat
     2581 tcagatagga agtcttttgc tgggaggtac taacccggta cgtgtacaat ctatggctaa
     2641 taccgatacc aatgatatcg aaaattcagt agcccaatgt ttacgaattg tggaagcagg
     2701 tggtgaaatt gtccgtttta caactcaggg cgttcgcgag gccgaaagta ttggcaaaat
     2761 tcatgcagca ttacgtgaac aggggtgtaa cgttcctttg gtggctgata ttcatttcaa
     2821 tgccaatgca gcagatgtgg cagctacgca tgtagagaag gtgcgtatca atcccggaaa
     2881 ctacgtggga agtatcaaga ttggcgacac ttccgattat actgatgaag agtttgagtt
     2941 ggaatatcag aaaatccggg cgcgtttcat tccgtttctg aatatctgta aagcacataa
     3001 tacggctatt cgtatcggag ttaaccatgg ttcgttgagc gaacgaatga tgaaccgcta
     3061 tggtgatact tcacgcggta tggtagaatc gtgtatggaa ttcctgcata tttgcaacga
     3121 agaaaatttc cataacgtag tgatttccat gaaaacgtcc aatacggtca tgatggtaca
     3181 aacagtacgg ttgctggctg atgaaatgga aaaagccgga ttgcactttc cattgcattt
     3241 gggagtgact gaagcaggag atggcgaaga tggacgtatt aaatcggctg tggggatcgg
     3301 ggctttgctg gccgatggca ttggcgatac cattcgtgta tcattgagcg aagatccgga
     3361 atttgaaatt ccggtgggac gtttgctcgt ttcctatacc acgcagcgtg cgggtcacga
     3421 gccaattgtg gctcttgaga atatcttaca ctcgcgtttt gaatacaatc gccgtaaaac
     3481 gcatgcagtg ggcaatgttg gtggtgaaaa tgtacctgtt gttattgcaa gcggcgatgg
     3541 tgggttcgca actattccag attatatttt gtcaggtggc aaggtattgg atccttccgg
     3601 tgaaacctat ccgatttatt ctgccgacac aatcgctgca cttctgcagg atactgcgga
     3661 taagaagttt ctcgaaatta actatgcaga tttgactccg aaactgcttg ggcttttgat
     3721 tgaaaaacaa gatattgttg tgttgcttta tacggatcat ttgaatggag taggggacca
     3781 acgcgcattt ttccatacgt tgctgaatgc gggttgtaca gttcctgtta ttctgtgtcg
     3841 caattacagt gaagatgaac ttcagttcct tcagattaaa gctgctgccg acttaggcgt
     3901 aatgtttatc gatggcttcg gtgatggtat attgcttgaa aataaaggta gtatttctac
     3961 cgaagctata aattcggttg cttttggaat tttacaagcc tctcgcgtgc gcgttacaaa
     4021 aaccgagttc atttcctgcc cgggttgcgg acgcacgatg ttccatttac aacacgtcat
     4081 tgcgcggatt aaagcccgca catctcattt aaaggggttg aagataggta ttatgggttg
     4141 catagtaaat ggaccgggtg aaatggctga tgctgactat ggttatgttg gagccggacg
     4201 tggaaaagtg agtctttata agaaaaaaga atgcctcgaa cgcaatatag ccgaggatga
     4261 agccgttgat aagttgataa atttaattaa agtaaatggt gactggcacg aataggcatg
     4321 atatttgaac ttatttataa aaaaatatgt ttaaatagat gttcgaactg ttagcaaaaa
     4381 aagaaacagg gagtgccgga attaaaattt gattgtatga gaaaaattct ttttactctc
     4441 gcactggttg cgagtctgtt aggtaatggt ttaaatgccc aggttaaagg taaagctatt
     4501 ggtttgcgtt tagccaatga ggctcatggt ggagaaatat cttttcaggc accgcttgga
     4561 agagccaatc gtttggaatt ggatttaggg tttaataatt ggtacgagcg ttattatgga
     4621 tatggcccgg ggtttgagtt aacgggtgtg tatcaatggg tatggggctt gaatcaaatc
     4681 gcaaccggtt tgaactggta tcttggatta gggggtacag ttggtactta taatcctgat
     4741 tttggcttgg gcattgttgg acaagtgggt ttggagtata atttcaagat tcctttgcaa
     4801 atttcattgg attggcggcc aactatattt aattcatatt atacctatta tggaggtaat
     4861 gggttatcaa tacgttacag gttctgatgc ttttacaatt tttagatcaa gaatgaaata
     4921 taaacaataa actattacag ataaattata taaactaaaa atgaacagta tgaaaaaaat
     4981 tattcttacg ctcgcattag tattgagcat agcaggcgca gttagtgcac aagcagatgg
     5041 ccagtcaatt ggtcttagat tggggtatcc tactgaatta tcttatcaaa aagctttaag
     5101 taactcaaat cgcttggaat taggcttagg atttcgttct tatggttatg gggttggcag
     5161 caactactca cgaatttctt tatctggtgt ttatcaatgg gtttgggatt tatcaagttt
     5221 agcagatggt tttaattggt atgctggtgt tggtgcatcc gtaggttatt attcatattc
     5281 gtatatgaat tatacatatt cggcattgcc tgtttcaata ttaggccagg taggaattga
     5341 atataatttt aatatcccga tcagattgtc attagattac aggccagcct tccaacttaa
     5401 tggaaatgga aatggctttg taggagatgg aattgccttg ggagttcgtt attgtttcta
     5461 aaagcaggcc tttggcagta taaaaaaagc aggattcaat ttgaatcctg ctttttttat
     5521 tatttaattg tcactaatta aagtgttttc cgtacttctg tttcttcgta gctttcaacc
     5581 atgtcaccaa cgcgtatatc gttataacct ttgatattca aaccgcactc atagttagtc
     5641 ccaacttctt ttacatcgtc tttgaatcgt tttaaagaat caagctcacc ggtaaatact
     5701 acgatgccat cgcgaatgat acgcaccttg tttccacgtt tgatttttcc ttcgcgaacc
     5761 aaacagcctg caattgtacc cactttggtg attttgaata cttcaagaat ttctactgta
     5821 gcggtaattt cttccttaat t
//
LOCUS       DATDNM010000123         4405 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1937695, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000123 DATDNM010000000
VERSION     DATDNM010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4405
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1937695"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1009)
                     /locus_tag="VI413_02055"
     CDS             complement(<1..1009)
                     /locus_tag="VI413_02055"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY6913431.1"
                     /translation="MFGKTIVKWFMLASNLVAASFMLITLLGSVLSPEKLILPAYFAL
                     AFPIILAVNVAFVIFWMLVRKWAFLISLSLLLFSATQIKDTFPVHIGKTEYVIPTIQP
                     VHILSYNMMMSGKLKKHTKKRPNKVIQYILDSDADIVCLQEFMVSLKDEYITNSDMLR
                     IFKKYPYKHICYSHKQVSKLSGIATFSKFPIVNKQRINYPSYANLSIYSDIKVNGTII
                     RLVNNHLESNRLTENDKAMPIRLKDNFDAENLTGVTMHFSRKLGIAYKMRASQADIVA
                     KVIAMSPYKVLVCGDFNDVPVSYAYTKVKGNLKDAFSETGNGLGWTFNQKFYGFRIDY
                     VL"
     gene            complement(1064..1954)
                     /locus_tag="VI413_02060"
     CDS             complement(1064..1954)
                     /locus_tag="VI413_02060"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008862891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEY6913432.1"
                     /translation="MSISDNLKQTFRHGNSVIKLIYINGAVFLILNLFLLVFQLFNSS
                     GDFLLNYLAVPASLSELLRKAWTPLTYMFLHKDILHFFFNMLTLFWFGKIFLMYFSEK
                     QLIGLYLLGGLLGAFFYIAAFNLFPYFAPVLNHSILLGASASIMAIILATAIQSPNLQ
                     LQVLLLGNVKLKYIAVFFVLMSVFGITSDNGGGQLSHLGGALAGYIFIVSLRQGRDLT
                     KGISRILDSAFNVFGPRKLKVKPNPHRRKAPMNDAEFNVNKARKMEEIDKILDKIKTS
                     GYESLTAEEKKRLFEQGNKN"
     gene            complement(1967..2698)
                     /locus_tag="VI413_02065"
     CDS             complement(1967..2698)
                     /locus_tag="VI413_02065"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEY6913433.1"
                     /translation="MSNYQPSFLSSIPPVVKNLIGINIVLFLASIVMPTIFSRMGLNV
                     NLNDILGMHYWESSKFNPAQLVTYAFMHGGFMHIFFNMFALYMFGGVLEHVWGTKRFL
                     IYYLVTAIGAGIIQQIFWTVEFHSALTAINQAISSDALNAPSLIEQKRLFLDSPNFIT
                     IGASGSVFGLLLAFGWLFPEERLFLMFIPVPIKARIFVFIYGVVELFQGVANFSGDNV
                     AHFAHLGGMLFGAILILIWKRKKRY"
     gene            2990..3298
                     /locus_tag="VI413_02070"
     CDS             2990..3298
                     /locus_tag="VI413_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004368971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEY6913434.1"
                     /translation="MFIVSNKKNQNLMNKAELINAIAAEAGLSKVDAKKALDAVVKSV
                     SDALVAGDKVSLVGFGTFSVAERAARPGINPATKQAITIEAKKVAKFKAGAELTAAVN
                     "
     gene            complement(3437..3979)
                     /locus_tag="VI413_02075"
     CDS             complement(3437..3979)
                     /locus_tag="VI413_02075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1 family glyoxalase III"
                     /protein_id="HEY6913435.1"
                     /translation="MKAYFFLANGFEEIEAIAPIDIFRRANIEVITVSISDNKEVAGA
                     HGVSVLADNLFSEIDFNGDFLIFLPGGMPGTKNLDAHEGLKNLINTQVKAGKPIAAIC
                     AAPSILGKMGLLEGKEAICYPGFENQLLGAKISEKKIVKSGTISMAKGAGVTIQFALK
                     LVEDLKGKAEADRITNSICL"
     gene            complement(3990..>4405)
                     /locus_tag="VI413_02080"
     CDS             complement(3990..>4405)
                     /locus_tag="VI413_02080"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY6913436.1"
                     /translation="KEQDAINKANSSMSGLFGNSTSAGNGNGTGTGSGEGPGRQGNPA
                     GKGYSGGHSWSLNGRSLSGTLASPSYDKDVEGKVTVNIRVDEYGRVISASIGSPTTIS
                     DADTRNAAISAANRAHFSPGSGNATGSITYYFRLK"
BASE COUNT         1478 a          920 c          730 g         1277 t
ORIGIN      
        1 aaagcacgta gtcgattcgg aaaccataaa atttctgatt gaaagtccag cccagaccgt
       61 ttccggtttc cgaaaatgca tcttttaaat ttcctttcac ctttgtatac gcatatgaca
      121 caggcacatc attgaaatcg ccacacacca acactttata aggcgacatg gcaattactt
      181 ttgcaacaat atctgcttgc gaagccctca ttttataagc aattccgagc ttccgggaaa
      241 aatgcatcgt tacgcccgtc aggttctcgg catcaaaatt atcttttagc cgtataggca
      301 tcgctttatc attttcagtc aaccggtttg attccaaatg attattaacc aaccgaataa
      361 tggttccatt cactttaata tccgaataaa tagaaagatt ggcgtacgac ggataattta
      421 tacgctgctt atttacaatt ggaaatttag agaaagtggc tatcccgctc agctttgaaa
      481 cttgcttgtg cgagtagcaa atatgtttgt atgggtattt tttgaaaata cgtagcatat
      541 cggaattcgt tatatactca tctttaagac tgaccataaa ctcctgcaaa caaactatat
      601 ctgcgtcact atcaagaatg tattgaatga ctttgttcgg gcgttttttg gtatgtttct
      661 tcagctttcc gctcatcatc atgttatacg acaagatatg aaccggttga atcgttggaa
      721 ttacatattc agttttccct atatgaactg gaaaagtatc cttaatttgt gttgccgaaa
      781 acagcagtaa acttaacgat atcagaaaag cccacttgcg aaccaacatc caaaagatta
      841 caaaagcaac attgacagct aatatgattg gaaaagcaag ggcaaaatag gccggcagaa
      901 tgagtttttc ggggctcagg acactaccca gcaaggttat gagcatgaat gatgccgcca
      961 ctaaattgga agcaagcata aaccatttca ctatagtttt tccaaacata acctttatta
     1021 attcataact caatattcat aattaagagc tataaattat gaatcagttt ttgtttcctt
     1081 gttcaaacaa ccgttttttc tcttcggctg tcagactttc atatcccgac gtttttattt
     1141 tatcgagtat cttatctatt tcttccattt tgcgtgcctt atttacatta aattcagcat
     1201 cgttcatagg agcttttctt cggtgtggat taggtttaac tttcagttta cgaggcccaa
     1261 agacattaaa agcagaatcg agtatccggc ttattccttt cgtcaaatcc ctaccttgtc
     1321 gcaaagatac aataaatata taacctgcca aagccccgcc aagatgtgat aattgaccgc
     1381 caccgttatc cgaagtgata ccaaaaacgc tcattaaaac aaaaaataca gcaatatatt
     1441 taagcttgac attacctaaa agaagcacct gtaattgcag gttgggcgat tgaatagcag
     1501 ttgccagaat aatggccatt atcgatgcag atgcacccag caggatacta tgattcaata
     1561 cgggagcaaa gtaaggaaac agattgaaag cagcaatata aaaaaacgca cctaataaac
     1621 cgcctaaaag ataaagcccg attaattgtt tttcggaaaa atacatcaag aatattttgc
     1681 caaaccaaaa caatgtcaac atattaaaga aaaagtgcaa tatatccttg tgaagaaaca
     1741 tataggttaa cggcgtccat gctttacgca gcaattcgga aaggctggca ggcacagcca
     1801 aataattcag caggaaatca cccgaagaat taaataactg aaaaacaagc agaaataaat
     1861 tcagaatcag aaatactgcg ccattaatgt agatgagctt tataactgag ttcccgtgcc
     1921 tgaaagtttg ttttaaatta tctgatatgc tcatattatc taagctttaa tatcgttttt
     1981 ttcttttcca aatcaaaatc agaatggcac caaacagcat accacccaaa tgagcaaaat
     2041 gcgccacatt atcgccggag aagttagcca ctccctgaaa caattccaca acgccatata
     2101 taaacacaaa aatacgcgct ttaatcggga ccggaataaa cattaagaag agtctctctt
     2161 ccgggaaaag ccaaccaaat gccaacaata aaccaaatac cgaacctgaa gcaccaatag
     2221 ttataaaatt tggagaatct agaaataatc tcttctgctc gataagtgaa ggtgcattca
     2281 gggcatcaga agaaatagcc tgatttattg cagtaagtgc agaatgaaac tcaaccgtcc
     2341 aaaaaatttg ttgaataata ccggccccga tcgcggtcac taaatagtaa atcagaaatc
     2401 gttttgttcc ccacacatgc tccaaaacac caccaaacat gtacaaggca aacatattaa
     2461 agaaaatatg cataaatcct ccatgcataa aagcataagt cactaattga gcaggattga
     2521 atttagaaga ttcccaataa tgcattccta aaatgtcatt taaatttaca ttcaagccca
     2581 tgcggctgaa tattgttggc ataacgatac ttgccagaaa caatacgata ttgatgccaa
     2641 ttaaattttt tacaacagga ggtatggaac ttagaaaaga tggctgatag ttactcattt
     2701 tagaatttag aatataaaaa tgtataaaaa taacacatat taggatttat tttttagaat
     2761 cctacagtta ttattgctgt tttatggatt ttgagatctt attttttcga cttagtatgt
     2821 tcataaacac cctaaaaacc tcatttttgt actacaaaag taatgaaatc taagtcaaaa
     2881 atatgttttc taacatattt tacgaaaaat cataaaataa actgattttt tttaatttaa
     2941 atgcttgtat attatataca aactactaca tttgcaatat caaaaatcta tgtttatcgt
     3001 ttctaataaa aaaaatcaaa atcttatgaa caaagcagaa ttaatcaatg ccatcgctgc
     3061 tgaagcaggt cttagcaaag tagatgcaaa aaaagctctt gacgcagtag ttaaaagcgt
     3121 atctgacgcc cttgttgctg gcgacaaagt aagtttagtt ggtttcggta ctttctctgt
     3181 tgccgaacgt gctgcccgtc cgggtatcaa tccagccaca aaacaagcta ttactattga
     3241 agctaaaaaa gtagctaaat ttaaagccgg agctgaatta acagctgcag ttaactaaga
     3301 tcagagcatt gactcacaac agaaaaaagg aatatgaatt catattcctt tttttatatc
     3361 tgctaacgaa aaaacggttc ttttgttcag atacaacaca accctccaaa tagatttaac
     3421 tttgccaata tcgaatttac aaacatatag aattggtaat gcggtcagcc tcggctttac
     3481 ctttcagatc ttcaaccaac ttcaacgcaa attgaatagt aacgcctgct cctttagcca
     3541 tgctgatagt gccggatttt actatttttt tttccgaaat tttcgctccc aacaattgat
     3601 tctcaaaccc tggataacaa atagcttctt tgccctccaa caatcccatt ttacccaaaa
     3661 ttgaaggtgc agcacaaatt gctgcaatcg gctttccggc ttttacctgc gtattaatca
     3721 gattcttcaa tccttcatgc gcatccagat tctttgttcc cggcataccg ccaggcaaga
     3781 aaataagaaa atcaccatta aaatctattt cagaaaacaa attatcggct aaaacagaaa
     3841 caccatgagc accggcaacc tctttattat ctgaaataga aacggtaatc acctcaatgt
     3901 ttgcccgtct gaaaatatcg atgggcgcaa tagcttcaat ttcttcaaag ccatttgcaa
     3961 gaaaaaaata agctttcata tttttactat tattttaacc tgaaataata tgtgatagac
     4021 ccggtagcat taccacttcc gggtgaaaaa tgagcacgat tggctgccga gatagcagca
     4081 ttccgtgtgt cggcatccga aatggttgtt ggcgaaccga ttgatgcgct gataacacgt
     4141 ccatactcgt caacacgaat atttactgta accttacctt ctacgtcttt atcataactt
     4201 ggcgatgcca gagtccccga taacgaccgt ccattcagcg accaggaatg accgcccgaa
     4261 tatccttttc cggcagggtt accctgacgt ccgggtccct cgccggagcc tgttcctgtt
     4321 ccatttccgt taccggccga agtagaattg ccaaacaagc cgctcatgga cgaatttgct
     4381 ttatttatgg catcctgttc tttcc
//
LOCUS       DATDNM010000124         5685 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_15404, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000124 DATDNM010000000
VERSION     DATDNM010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5685
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15404"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..362
                     /locus_tag="VI413_02085"
     CDS             <1..362
                     /locus_tag="VI413_02085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913437.1"
                     /translation="TFAKVCFPIKVTPAILGKCGFKHEFGDWYINRAAEGIEEGLPFL
                     RYRGIDNGWYLGKIKLLSQPLYLHQLQNLFYALSNEELKIDLGCFENSAMTGIVDFFV
                     KPIERQTRIMETYVRIH"
     gene            749..1051
                     /locus_tag="VI413_02090"
     CDS             749..1051
                     /locus_tag="VI413_02090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913438.1"
                     /translation="MNDIISYNIDEETISTLGLIITDKQVNAQSTPHARVFEYPHLDN
                     VFIMENDLYGTTMPEHTCFIAFNGRHGLVGKYLAIEELKKFSVEEIRQLVADNSEG"
     gene            complement(1398..1553)
                     /locus_tag="VI413_02095"
     CDS             complement(1398..1553)
                     /locus_tag="VI413_02095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0937 family membrane protein"
                     /protein_id="HEY6913439.1"
                     /translation="MTNLLYIIAVILIVGWLLGFFFFHAGNLIHILLVIAVVVILVRV
                     IQGRKVV"
     gene            complement(1717..2829)
                     /locus_tag="VI413_02100"
     CDS             complement(1717..2829)
                     /locus_tag="VI413_02100"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HEY6913440.1"
                     /translation="MKPKISGIPFEETVKVEPKNTKALPTMKALVYGGPGKMELKNVP
                     IPTITKPTDALIKVLKTTICGTDLGILKGKVPTVKPGTTLGHEGVGVVEQVGAAVRNF
                     KKGDHVIISCITSDGTCEYCKKQMYAHCKDGGWMLGHTINGTQAEFVITPHADNSLHH
                     IPAGSDEEALVMLSDILPTGHEIGVLNGRVRPGDSIAIVGAGPIGMSALLTAQFYSPA
                     RIYMIDLDDNRLQTAKKFGATDIVNSSKKDAVEKIMTDTGDGVDVAIEAVGLPESFDV
                     CQNIIKPGGHIAVVGVHGHSVDLQLQKLWIQNITLTTGLVSTNTTPMLLKTVSSGKLD
                     PKKLITHHFDLNEILKAYSIFGNAGKEKAMKVIIEV"
     gene            complement(3067..3240)
                     /locus_tag="VI413_02105"
     CDS             complement(3067..3240)
                     /locus_tag="VI413_02105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913441.1"
                     /translation="MYQPQPYVLLIDDDQEELEMFSSGLEMKGVKVKAFDSPSKALRH
                     LALRFGNMDNDYA"
     gene            3615..4175
                     /locus_tag="VI413_02110"
     CDS             3615..4175
                     /locus_tag="VI413_02110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006844262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6913442.1"
                     /translation="MKLLIKNMVSLRCKMIVKSELEKMHIRSNVVELGEVEIAEQLTS
                     EQQQELKVSLSKFGFELMEDKKSMLIEKIKNTVIEMVHYSDEPPLLNFSAYLSKKLNY
                     DYNYLSNLFSEVKGTTIEHFIIAHKIERAKELLIYNELSLTEIAEKLHYSNVAHLSNQ
                     FKKVTGLTPTFFKNMKHKRLIALENL"
     gene            4269..4634
                     /locus_tag="VI413_02115"
     CDS             4269..4634
                     /locus_tag="VI413_02115"
                     /inference="COORDINATES: protein motif:HMM:NF018008.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY6913443.1"
                     /translation="MKTDKNNRFDITELEKSKAHIIVEISEYVPNSVLTKTIIKKTTG
                     NITVSAVDEGEELAEKTLAFDSFVQIIDGSADVIINGGKFKLALGEGIIIPAHSSHSI
                     EATEQFKMISTIIKSGYED"
     gene            4686..5129
                     /locus_tag="VI413_02120"
     CDS             4686..5129
                     /locus_tag="VI413_02120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913444.1"
                     /translation="MKYIHTKSITRSILSITAAFLILFHFNSCAKKISFQNSSMVPAA
                     RGDVKVKKDNNNNYSIQIALSNLAEPKRLTPPKSTYVVWMKTDDNVTKNIGQINSSTG
                     FLSGKLKASFGTVSATKPRQIFLTAEDDAGVQFPGGEVVLTTRDF"
     gene            5358..>5685
                     /locus_tag="VI413_02125"
     CDS             5358..>5685
                     /locus_tag="VI413_02125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913445.1"
                     /translation="MKTIKFVCSDPRQKQFAVSVRKNVNSYFRSNGISIKGNLRLAIQ
                     TTVMLLLYLSPFVLLIVIPMNAWIAMLMAALIGTGMAGVGMCVMHDAIHGSYSDKEWM
                     NKMLGRT"
BASE COUNT         1727 a         1115 c         1122 g         1721 t
ORIGIN      
        1 acacgtttgc aaaagtctgt tttcctatca aggtaacacc tgctatttta ggcaaatgtg
       61 gttttaagca cgaattcgga gattggtaca tcaatagggc tgctgaagga atagaagaag
      121 gtttgccttt tttgagatat cgcggtattg ataatggctg gtacctggga aaaataaaac
      181 tactgtcgca acctctttat ttgcatcagt tgcaaaacct tttttatgca ttgtctaatg
      241 aagaactaaa gattgactta ggctgttttg aaaacagtgc tatgacggga atagtcgatt
      301 tctttgttaa accaattgaa agacaaacaa gaatcatgga aacatacgta aggattcatt
      361 gaaatccgta aaactataaa accaggtttt aaatgatgca ataatcgggg ttatgcaaag
      421 cattgctctt tgttacatag gtttttcaca ggatattgga agttaatctt tgcccatctg
      481 acaatatgaa agccagcagg ttaaaatctg caggctttat taatgtggat agccgaagca
      541 attaaacctt ccaggttaag tccagatctc caagaatgaa agtgcggctg aattcaggat
      601 agctactata agcgcctcaa tcagaagcca atcatgtaac tctggatgac agatttagtt
      661 tgtccgcctg actgaaaatc gcaccgcccc ttcgaacact ttgattactt cagcggtggg
      721 tttgttaata atcataaata ataaaattat gaacgacatt atcagttata acatagatga
      781 agaaacaatc agcacgcttg gattgattat tacagataaa caagtaaatg cgcaaagtac
      841 gccgcacgca agggtatttg aatatccaca cctggataat gtgtttataa tggagaatga
      901 tctgtatgga actactatgc ctgagcacac atgctttatt gcttttaatg gcaggcatgg
      961 gttagtgggt aaatatttag ccattgaaga acttaagaaa ttcagcgttg aagagatacg
     1021 ccaacttgtg gccgataatt cagaaggtta aaatcagtca tcaagcaata agtattttcg
     1081 gcctaacgat aatacgattt ccgtatccga attcaatacg aaaaaactgg tcgttcgcgg
     1141 gatgtatctc ttctctgatt tattctttgg actgaacgct cattaataca agctgactat
     1201 cctcaaaatg tattatactt tccgaaagtc agaattgttc tttgccatct ttagatattt
     1261 gcttaaatac tttcacatta cccaattgat tgtttaagga tgtaaacgca gctatgagcc
     1321 ctgccaaccg atacagcagt tcttcgtgat gaaaaaccct tgcatgttag ccggaatcag
     1381 aatcatcgac ccgattatta gactactttt cttccctgga taacccttac caggatgaca
     1441 acaacagcga taaccagaag aatatgtata agatttcctg catgaaaaaa aaagaatccc
     1501 aacagccaac caacaatcaa aatgactgcg atgatgtaaa gtaaattggt cataaaattt
     1561 gttttaaaag taaaaaatca ggctcttccc cccccggttt tccacttacg actgttgctg
     1621 ttttcgatga ctgaaaccat tggggcctca tacggtacgg atcgaaaaga attcgcttcc
     1681 gaaaatccgg ctgatcaaat caggattgag gaaacctcaa acttcaataa ttactttcat
     1741 cgctttttct ttccctgcat ttccaaatat tgaataagct ttcagtattt catttaagtc
     1801 gaaatgatgg gttatcaatt ttttgggatc gagttttccc gatgaaacag tcttcaacaa
     1861 catcggcgtt gtattggtgc ttaccaatcc tgtagtaagt gtaatattct gaatccataa
     1921 tttctgaagc tgtaaatcga cactatgccc atgcacacca accacggcaa tatgtccccc
     1981 tggtttaata atgttctggc atacatcaaa gctttcagga aggccgacag cttctatcgc
     2041 aacatccact ccatcaccgg tatcagtcat gatcttttct accgcatcct tttttgatga
     2101 gttaacaata tctgtagctc caaatttctt tgccgtttgc agacggttat cgtcaaggtc
     2161 gatcatatag attctagcag gagaataaaa ctgtgcagtc aataaagccg acattcctat
     2221 aggtcctgcg ccaacgatag caatggagtc tcccggtcgc acacgtccgt tcaatacacc
     2281 aatttcatgg ccggttggta aaatatcact tagcatcaca agggcttctt catccgatcc
     2341 tgcaggaata tgatggaggc tgttgtcggc gtggggagtg atcacaaatt ctgcctgggt
     2401 tccattaatg gtgtggccca gcatccagcc tccatctttg caatgagcat acatttgctt
     2461 tttgcagtat tcacaggttc cgtccgaagt gatgcaggaa ataattacgt ggtcgccttt
     2521 tttaaaattt cttacagcgg ctcccacttg ttcgaccacg ccaacacctt catgtcccag
     2581 cgtagtacct ggttttacgg ttggcacctt accttttaag atgcccaggt ctgttccgca
     2641 gatcgtggtc ttcaggactt tgatcagggc atcggtaggt tttgtaatgg ttgggatagg
     2701 tacgtttttc aattccattt ttccggggcc gccatacact agcgccttca ttgttggcaa
     2761 agcctttgta tttttcggtt cgacttttac tgtttcttca aacggtattc cgctgatttt
     2821 tggcttcata caaatttttt tatcgtttgt aatacaaatg ctaattcctg tattttttca
     2881 acctggctgt taaactcgtt gttcgtccag gacttactaa aacaatccaa tgctcctcag
     2941 ctagcagttg ggttctaaga acctcggaca gctggttgaa tacatgacaa cagggacgtg
     3001 tccggtgctc ttattgcctt tgatttcctg taacacctgg tgtccgttct ttttgcgaat
     3061 gtgtagtcaa gcataatcat tgtccatatt gccaaatcta agcgctaaat gacgcagtgc
     3121 ttttgatggc gaatcgaagg ctttgacttt aacacccttc atttctaacc cggaagagaa
     3181 catttcaagt tcttcctggt catcatcaat caataagaca tatggctgag gttggtacat
     3241 ataacaggtt ttatggcttg cgatctattt cttttcaata aaagaaatgc caacactatt
     3301 cagtaaagaa gatcgtggca agagcgtttt caagcattca gagagtaata aatactgccc
     3361 ggtttagaac cgggctagta tttggcagga caataggcac gattgcgacc gtacaactaa
     3421 acttcacatg atgatgtaaa attgcatgga ttgccccgca ttattattac agcatttggt
     3481 gcaacaattg taagatttac agattttggc tgatgtaaaa caggtagagt gccccgcttt
     3541 ttaaaattgt acctttggtt gttcttatta gtacaatcaa taagcacgta gcatgtgctt
     3601 tttacttctg ggatatgaag ctccttataa aaaacatggt aagtcttcgc tgcaagatga
     3661 ttgtaaaatc ggagcttgag aaaatgcata tccgttctaa cgtagtagaa ttaggcgagg
     3721 ttgaaatcgc cgagcagctt acttcggagc aacagcaaga gctgaaagtt tccctttcta
     3781 aatttggttt tgaattgatg gaggataaaa aaagcatgct cattgaaaag ataaaaaaca
     3841 ctgttattga aatggtgcat tacagtgacg aacctccttt gttgaacttt tctgcttacc
     3901 tgagcaagaa gctaaattat gattacaatt acctttctaa tcttttttct gaggttaaag
     3961 gcactaccat cgaacacttc attattgccc ataaaattga aagggcaaag gaattattga
     4021 tctataacga actttcccta actgaaattg ctgaaaaact tcactacagc aatgtggctc
     4081 atctatcaaa tcaattcaaa aaagttacag ggctaacccc tacttttttt aaaaacatga
     4141 aacataaaag actgattgct ttggagaatt tatagtcatc tatctttctc ttctaaaaca
     4201 ataaatcttg taacaataga agctaatgat gtaatgtttt gtccatacaa taagatgacc
     4261 tttagtaaat gaaaacggac aagaacaatc gatttgacat tacagaactt gaaaaatcga
     4321 aggcccatat tatcgtggag atatcggaat atgtgccgaa ttctgtttta accaaaacca
     4381 taatcaaaaa aactacgggt aacattacgg tttcagcagt agatgaaggt gaagaattag
     4441 ctgaaaaaac actggctttt gattcttttg ttcagatcat agatggatca gcggatgtca
     4501 tcataaacgg agggaaattt aaactggccc ttggtgaagg catcattatt cctgcccatt
     4561 cgtcgcattc tattgaagca acagagcagt ttaagatgat atctaccata attaaaagtg
     4621 gatacgagga ctgatcagat tgcttcgcag atttgtctgt tgaattaaac tttaaactaa
     4681 atagcatgaa atatattcat acgaaatcga taacccgctc gattctttca attacagctg
     4741 cctttttgat actgttccat tttaactcgt gcgctaagaa aatcagtttt caaaattctt
     4801 ccatggttcc agccgcaaga ggtgatgtta aggttaaaaa agacaacaac aacaactaca
     4861 gtattcagat agctctcagt aacctggcgg agccaaaaag attgacgcca cccaaatcta
     4921 cttatgtggt atggatgaag acggacgata atgtcaccaa gaacatagga cagatcaata
     4981 gctctacagg ttttttatca ggtaagctaa aggcttcatt tggaaccgtg tctgcaacga
     5041 aaccacggca gatttttctt accgccgagg acgatgcagg tgttcaattt cccggcggag
     5101 aggttgtgct gacgacgagg gatttttgat tccggggcta tcgtgattgc agaaaatcgt
     5161 tactgattga tgcctggtaa gaactgaaaa tttgacgtag agaaaagggg aatgaccatc
     5221 aagaccaatt gattcgttct ttttattcaa attctcctca ttcggtccta agcactgtaa
     5281 tcagtcatca aatgttctga ctccgatcat ttcgtggttt gcttcattcc catattttta
     5341 agttgttaag caagcgtatg aaaactataa aattcgtttg tagtgatccc cgtcaaaaac
     5401 agtttgctgt ttcagttcga aagaatgtta attcgtattt caggagcaat ggaatatcaa
     5461 taaaaggtaa tctgcggctt gccattcaaa caacagtaat gctattgctg tatttatctc
     5521 cattcgtgct actaattgta atcccaatga atgcctggat tgcaatgttg atggcagctt
     5581 taattggtac tggaatggcg ggggttggca tgtgtgtaat gcacgatgca attcatggat
     5641 cttattcgga caaagaatgg atgaacaaaa tgctgggcag aacca
//
LOCUS       DATDNM010000125         3966 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_762968, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000125 DATDNM010000000
VERSION     DATDNM010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3966
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_762968"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            452..1645
                     /locus_tag="VI413_02130"
     CDS             452..1645
                     /locus_tag="VI413_02130"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY6913446.1"
                     /translation="MTKLRLLLSVFMTGILFFGILFSSCNSPDLQSVAISKVGVPTLV
                     ASSAMNNKYIVVINEDVDQKAINLQTRKDNVISKAQGILKKHQIPGDLEEVYQSALKG
                     FTVRLTPAQVKLLANDNSIKSIEPDAVISLSPINANGKPTPPAPTQTTPWGVTRVGGG
                     TTTPTGTAWIIDTGIDLDHPDLNVDLTRSVTFLGAKTTPNDENGHGSHVSGIIAAKNN
                     SIGVVGVAPGAKLVSVRVLNRSGSGTISGVIAGVDYVAEKGQAGDVANMSLGGSASSS
                     LDLAVFNASATVKFVLAAGNETDNANNHSPARVNGPNIYTISAMNSSDNWASFSNFGN
                     PPVDYCAPGVSIYSTYKDAGYATLSGTSMAAPHVSGLLLIGALQTSGTVNGDPDGNPD
                     PIAHH"
     gene            complement(1769..3769)
                     /locus_tag="VI413_02135"
     CDS             complement(1769..3769)
                     /locus_tag="VI413_02135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011107440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043169 - cation binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha amylase C-terminal domain-containing
                     protein"
                     /protein_id="HEY6913447.1"
                     /translation="MKDLAIIKSDPWLAPFAGAINGRYEYFESVEKKLTGDGQTLSGF
                     ATGYLYFGLHRVSDGWVFREWAPNATAIFLIGDFNNWQRHPDYQLKKMQNGIWEIRLP
                     EFAIAHSQLYKLLIEWEGGSGERIPAWARRVVQDDSTKIFSAQVWSPFQPYVFKNTKF
                     VPKTDPLLIYECHIGMSSSEEKVSTYDEFRTNVLPRISRAGYNCIQIMAIQEHPYYGS
                     FGYHVSSFFAASSRFGTPEELKHLIDDAHGMGISVIMDIVHSHAVRNEVEGLGRFDGT
                     PYQYFHGGSRREHPAWDSLCFDYAKPSVLHFLLSNCKFWLEEYKFDGYRFDGVTSMLY
                     RSHGLGEDFSGYESYYNLNQDGDAICYLTLANKLIHEVNPNAISVAEEVSGMPGLATK
                     VEDGGIGFDYRMAMGIPDFWIKMIKEVKDEDWKVGHILWELTNRRSDEKTISYAESHD
                     QALVGDKTIIFRLIDSEMYWHMQRGDNTLIVDRGVALHKMIRLITASTINGGYLNFMG
                     NEFGHPEWIDFPREGNGWSHKYARRQWELVDNEKYLYNALGEFDREMIAMINSVPEFN
                     ETPVQQLWDKEGDQVLAYQRGKFVFVFNFNGSKSFTDYGILADKGSYKIVLNTDKTVF
                     GGFNLIDENIEHFTLPNPKEPTGKEWLKLYIPARTAFVLKRQ"
BASE COUNT         1244 a          857 c          706 g         1159 t
ORIGIN      
        1 acttaatttt ctcacataaa ttactcaaag cagacgggct ttttgtattg gaacattcag
       61 cgaaacattc atttataaat catcctaatt tttcagatca ccgtaattac gggaatgtaa
      121 acttcagttt cttcgaatta aaagaataag attttcggga gtgtatcatc cttatttcta
      181 gtcactaaaa caatagtatt ttatactctt cacatctaaa accggctgaa tatcgaaatt
      241 gatattcagc cggtttttta tttatcaaat gtttatctaa tcgaaaaaga caaaaaacta
      301 tactgattcc tgcattgtta tataatagca acaaaaaagt ctattatcgc aaatcaacta
      361 aataaaagtg accttaattt gaatcatttt tatgcattta aattaaattg cgtctaatct
      421 aattaaacat taatttaaaa aaatcggaat catgactaaa ctcagactac tcttatcagt
      481 ttttatgacc ggaatattat ttttcggaat attattctca agttgtaatt ccccggattt
      541 acaatcggtt gctatatcga aagttggagt tccaacattg gttgcaagtt ccgctatgaa
      601 taataaatac attgttgtga ttaacgaaga tgtagatcaa aaagcgatta atcttcaaac
      661 acgtaaagac aatgtaatct caaaagcaca gggcatatta aaaaaacacc aaatccctgg
      721 ggacctcgaa gaagtttacc aatcggcact gaaaggattt acagtaaggc ttactcccgc
      781 acaggtcaaa ctgctagcta atgacaattc aattaaatca atcgaacctg atgctgtaat
      841 ttctttatcc cctattaatg caaacggaaa accgacacct cctgctccca ctcaaactac
      901 gccctggggc gttacacgcg ttggtggagg aactacaacc ccaaccggaa cggcatggat
      961 tattgatacc ggtattgatt tagaccatcc ggatttaaat gtagacttaa ccagatcggt
     1021 gacattttta ggagctaaaa caaccccgaa tgatgaaaat gggcatggtt cacacgtttc
     1081 ggggattatt gcggccaaaa acaactcaat cggagtagta ggtgtagccc ccggagcaaa
     1141 attagtatct gtacgcgtgc ttaaccgttc gggaagtgga acaatatctg gcgtaatagc
     1201 cggtgtggat tatgttgcag aaaaaggaca ggcaggcgat gttgcaaata tgagtttagg
     1261 tggcagtgca tccagtagcc ttgatctggc tgtatttaat gcatcagcca ctgtgaaatt
     1321 tgttctggct gctggcaatg aaactgacaa tgcaaacaat cactctcccg ctcgtgtaaa
     1381 cggacctaac atctacacta tttcagcaat gaacagttcc gataactggg cttcgttttc
     1441 aaactttggc aatccacctg ttgattattg tgcaccgggt gtttccatat actcaacgta
     1501 taaagatgca ggatatgcaa ctttgtcagg cacctccatg gcagctccgc atgttagtgg
     1561 gttattgctg attggtgctc tacaaacgag cggaacagta aatggagacc cggatggaaa
     1621 tccggatcca attgcccatc actaacttta tttcagtaca aactattaat aactaataaa
     1681 acaggctgaa catcaaaatg atattcagcc tgtcttatta ataaacctca aagatctaac
     1741 tttgctttga gtttttatat tcggcagatt attgtctttt caatacaaaa gctgttcttg
     1801 ccggaatata tagtttcaac cattctttgc ctgttggctc tttaggatta ggcaaagtaa
     1861 aatgttcaat attttcatca atcaggttaa agcctccaaa aacagtctta tctgtattta
     1921 acactatttt ataacttcct ttatcggcaa gaattccata atcggtaaac gatttggatc
     1981 cattgaaatt gaaaacaaat acgaattttc cgcgctgata agccaatacc tggtcacctt
     2041 ctttgtccca caattgctgc accggcgttt cattaaattc cggaactgaa tttatcatag
     2101 caatcatttc gcgatcgaat tcacccaaag cattatagag gtatttctca ttatcaacca
     2161 gttcccattg gcgacgggca tatttgtgcg accaaccatt tccttcgcgg gggaaatcaa
     2221 tccattcagg atgtccaaat tcgttaccca taaaattcaa atacccaccg ttaatagtgc
     2281 tggcagtaat aagtctgatc attttatgca acgcgactcc cctgtccaca atcaacgtgt
     2341 tatcaccacg ttgcatgtgc cagtacattt cggaatcaat taaacggaaa ataattgttt
     2401 tatcacctac caacgcctgg tcgtgacttt ccgcatagct aattgtcttt tcatcggacc
     2461 ggcggttagt taactcccat aaaatatggc cgactttcca gtcttcatcc ttaacttcct
     2521 tgatcatttt gatccagaaa tcaggaattc ccatagccat acggtaatca aaaccaatac
     2581 caccatcttc cacttttgtt gccagccccg gcattccact aacttcttca gccacagaga
     2641 tagcattagg gtttacctca tgtattaatt tattggctaa agtcagatag caaatggcat
     2701 caccatcctg attcaggttg taatatgatt cgtaaccgct aaaatcctct cccaacccat
     2761 ggctacggta aagcatcgat gttacaccat caaagcgata accatcaaat ttgtattctt
     2821 cgagccagaa tttgcagttg gaaagtaaaa agtggagtac tgaaggttta gcataatcaa
     2881 aacaaagtga atcccaagcc ggatgttcac gtcgtgagcc accatggaaa tattggtaag
     2941 gtgtaccatc gaaacgtcca agaccttcta cctcgttacg aacagcgtga gaatggacaa
     3001 tatccataat cactgaaatt cccatgccat gcgcatcatc aatcaagtgc tttagttctt
     3061 ccggggtacc gaagcgggat gaagctgcaa aaaaactgga aacatgataa ccaaacgagc
     3121 cgtaatacgg atgttcctga atggccataa tctgaatgca gttatatccg gcacgtgata
     3181 tgcgcggcaa cacattcgta cgaaactcat cgtaagttga tactttctct tccgaacttg
     3241 acatgccaat atgacattcg taaatcaaaa gtggatcagt tttcggaaca aatttggtat
     3301 ttttaaatac ataaggttga aaagggctcc aaacctgtgc actgaaaatc ttggttgaat
     3361 catcctgaac tactctgcgc gcccaggcag gaatacgttc tccactacca ccttcccatt
     3421 caatcagcaa cttataaagc tgagaatgag caatggcaaa ttcaggtaaa cgaatttccc
     3481 aaatgccatt ttgcattttt ttcagttgat aatccgggtg tctttgccag ttattgaaat
     3541 cgccaatcaa aaatatggct gtggcattgg gagcccactc ccgaaaaacc cacccgtcgg
     3601 aaacccgatg taaaccaaaa tacaaatagc ccgttgcaaa acctgataaa gtttgtccat
     3661 caccagtcag ctttttctca acactttcaa aatattcgta acgtccgttt attgcaccgg
     3721 caaaaggtgc cagccacgga tcagatttaa taatagcaag gtctttcata cgataataat
     3781 tgatttttaa aggtcgtaag gaactcgcat gtcagatttt catctatact agtgaacgct
     3841 cacgttcatg ctcgtttcat gcgtgaataa ttattttact gtcacacaaa attcgaataa
     3901 attttcaacc actttgtacg gttaagcgtt tatgctcgtt tcatgtaatc aagttgtgcg
     3961 aatttc
//
LOCUS       DATDNM010000126         2488 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_763252, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000126 DATDNM010000000
VERSION     DATDNM010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_763252"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /locus_tag="VI413_02140"
     CDS             <1..465
                     /locus_tag="VI413_02140"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6913448.1"
                     /translation="NALKIDSLFAFAWDNMGLCYRKMDKYDEAIYAYNKSLELDPLGL
                     MPLQNIAVVYRYKKEYQKALAAYETLAQLDAKNPEVYYGIGLIYAYNLNDMEKGLDNM
                     CKAYNYYVAQKSPYRTDAEKVISVIYTEMKKQGKEAAFAEILKNNNITPNVM"
     gene            811..1401
                     /gene="ruvA"
                     /locus_tag="VI413_02145"
     CDS             811..1401
                     /gene="ruvA"
                     /locus_tag="VI413_02145"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016278555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEY6913449.1"
                     /translation="MIDYIKGEIAELTPAYVVLETAGIGYLVHITLPTFSFLGEQTSA
                     KLFIYEAIREDAHVLYGFRLQSERHLFLLLISVSGIGANTARMIMSSYSAEEIQEMIA
                     SGNVSALNAIKGIGTKTAQRIIVDLKDKIVKGTGGAEIPGFAASAHSEQKEEAVAALV
                     MLGFAAAASQKTVDKIIKEQPALKVEQLIKLALKMM"
     gene            1544..>2488
                     /gene="sprA"
                     /locus_tag="VI413_02150"
     CDS             1544..>2488
                     /gene="sprA"
                     /locus_tag="VI413_02150"
                     /inference="COORDINATES: protein motif:HMM:TIGR04189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein SprA"
                     /protein_id="HEY6913450.1"
                     /translation="MIFSNKTFTIILFCGIVFSSAYAFVRASEHIAAVPEASEITVAP
                     ADSDKQPKPTFPIKKYTQNSYEELDTKYPMDAPKPDNVKSVVEYDTKSGNYILRTMVG
                     ETEIATPFLMTEQEYRNYSAKKDLQQYWKEKNGKSEKNNEDKFSISDMKFNIGPADKV
                     FGPGGVQIKTQGSAELVFGYKSNKIDNPALTERMRKTGSFNFDEKIQLNVTGSVGDKV
                     NFGLNYNTESSFDFDQKMVKLAYKGKEDDIIKSIEAGNVSMQLNSSLISGSTALFGVK
                     TEMQFGRLNVSAIASQQESQTQTVSSKGGAQTTKFEVNI"
BASE COUNT          822 a          406 c          520 g          740 t
ORIGIN      
        1 aatgccttaa aaatagactc tttatttgca ttcgcatggg ataatatggg gttgtgttac
       61 agaaagatgg ataagtatga tgaggctatt tatgcttata ataaatcgtt ggaactggat
      121 ccgttaggtc ttatgccttt acaaaatatt gccgttgtct acaggtataa aaaagaatat
      181 caaaaggcac ttgccgctta cgaaaccctt gctcaacttg atgctaaaaa tccggaagtt
      241 tattatggca ttggacttat ctatgcttac aatctaaatg atatggaaaa agggcttgac
      301 aatatgtgta aagcttataa ttactatgtc gctcaaaaat caccttacag aacagatgca
      361 gagaaagtaa taagtgtgat ttataccgag atgaaaaaac aaggaaaaga agctgctttt
      421 gctgaaattt taaaaaataa taatataacc cctaatgtta tgtagttacg gcttaaaata
      481 ttttgttcta tagagtttta aaactgaaaa cttaggcagt ttgtttttga ctttccaagt
      541 tcgaaaagca gaaaaaggca cacgaaattg tgcctttttc tgctttcgga attttctggt
      601 gtagaaatat ggctttaatg aaaatatttg ttcagctgaa agtacatttt ttatgctgtt
      661 tagtactaat tattaatata tttcgttatt gatttcgatg catttctttc gcaggcttga
      721 aagatgcatt tcattttgga gaggtcgcaa ataatctgta tatttgcagg ttaaaaaaat
      781 taagatttag ggaattttac actacattca atgatagatt atataaaagg agaaattgct
      841 gaactgacac cggcttatgt tgtgctcgaa accgctggaa taggttatct tgtgcatatt
      901 acgcttccta ctttttcttt tctgggcgaa caaacttctg ccaaattgtt tatatatgag
      961 gctatccgcg aagatgcgca tgtgctttat ggattccggt tgcaaagcga gcggcacttg
     1021 tttttgctgc tgatttctgt ttccggcatt ggagccaata ctgcccgcat gattatgtcg
     1081 tcatattcgg ctgaagaaat tcaggagatg attgcttcgg gtaatgtgtc ggcgttgaat
     1141 gcaattaaag gcattggaac caaaacggcg cagcgtatta ttgttgacct gaaagataaa
     1201 atagtgaaag gaaccggcgg agctgaaatt ccgggttttg cagcaagtgc tcacagtgaa
     1261 cagaaagaag aagctgttgc agcgttggtt atgcttggtt ttgcggctgc agcttcacaa
     1321 aaaacagttg ataaaattat caaggaacaa ccagctctca aagtcgagca attaatcaag
     1381 ttggcattga aaatgatgta aatcagttga cagttaataa ttgtcaatga cccataaatc
     1441 ctccaagagg aatctgaggg ctaaatatac aataattaag aaaaaacaat ctgactttgt
     1501 aaattagtta ggagttttgc aaaaatgatt acccataata tttatgatat tttctaataa
     1561 aacatttact ataattcttt tctgcggtat tgtttttagt tccgcctatg cttttgtaag
     1621 ggcttctgaa cacattgcgg ctgttcctga agcatctgaa ataaccgttg ctccggctga
     1681 ttcagataaa caacctaagc caacctttcc gattaagaaa tatacccaaa attcgtacga
     1741 agaactggat acaaagtatc caatggatgc tcccaagccc gataatgtaa aatctgtagt
     1801 ggaatacgat actaaatccg gaaattatat actgcgtact atggtgggtg agaccgaaat
     1861 tgcaacgcca tttttaatga ccgaacagga gtatcgtaac tactcggcaa aaaaggattt
     1921 gcagcagtac tggaaagaaa aaaatggcaa atcagaaaaa aacaacgaag ataagttttc
     1981 catttccgat atgaaattca atatcggtcc tgccgataag gttttcggtc ccggtggagt
     2041 tcagattaaa acgcagggtt ctgctgaatt ggtatttgga tataaaagca ataaaattga
     2101 taacccggca cttacggagc ggatgcgtaa aaccggcagt tttaatttcg atgaaaaaat
     2161 tcagttgaat gtcaccggta gtgtgggcga caaagtgaac tttgggttga attataacac
     2221 tgaatcgagt ttcgatttcg accagaaaat ggtgaaactt gcctataaag gaaaggaaga
     2281 cgatattatc aaaagcattg aagccggaaa tgtaagcatg caactgaaca gctcgctgat
     2341 ttcaggaagt acagctttgt ttggtgtaaa aacagagatg cagttcggaa ggttgaacgt
     2401 atcggccatt gcttcgcaac aggaatcgca aacacaaacc gttagttcaa aaggcggtgc
     2461 gcaaactact aaattcgaag taaatatt
//
LOCUS       DATDNM010000127         2711 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1297756, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000127 DATDNM010000000
VERSION     DATDNM010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2711
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1297756"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..872)
                     /locus_tag="VI413_02155"
     CDS             complement(<1..872)
                     /locus_tag="VI413_02155"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HEY6913451.1"
                     /translation="MNKVQIDKGTYLPEFISTFEFYSQIIDSLQDYSIFTTDKELRIN
                     SWNEGSSKMFGYENEEVIGKHIEMIYTEEDRKKSIIQTKIETALKEGRVADYRWSVHK
                     DGSRFYAYEVIFPLKGKEGELLGFVKILRDLTERQKSEQAIQAYIKELEELNTHKENI
                     LAILSHDLRSPLSGIIQMAELLKTNYQNMEEDQLKTMLDSQYELANKELAMLDYLVEW
                     ARIKYASEVFTPRQIHLLPYVKKVFDTLGEVAAKASIQLHVEIEEDIQVFADEKMLLS
                     IMQNLVSNAIKHSVT"
     gene            1339..>2711
                     /locus_tag="VI413_02160"
     CDS             1339..>2711
                     /locus_tag="VI413_02160"
                     /inference="COORDINATES: protein motif:HMM:NF013125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HEY6913452.1"
                     /translation="MKRIIILLALMFFYTVGIGQVTINEFMASNTSTVKDPDYNNDAD
                     WIELYNNGDTPVNLNGYFLTDNLSKPNKWTITNLTIEPKGFAILWADSKDSASHTNFN
                     LSATAEQIGLFKPDLSIVDTLSYGLQDPNISYGRSTDGGSVWTLFTKATPGATNNSTS
                     YTGIVKSDPSFSLPGGVYHSSLTLTLKSIFGGDVRFTLDGTEPNEQSPIASAPITIDK
                     NTVVRARIHKSGEILGPVNTYTYLIDTENKINKLPIVCVSSDPANFWDPVKGIYTVHT
                     VKPDWEIPVNIELYENDGRTGAAFNLKAGVKSTGLYSWQLPEKMLGVSFRKEYGTSKL
                     EYPLIFDKERKTFKTFSLRASGSDWGNTMFRDGMIQSAAVENTNIDDSGFRACVVYIN
                     GQYMGIHNIREKIDEDYIVGNHGLESGSFDMIEETDAGHYAETGDFVANDYFLSLTAK
                     DLSNQAN"
BASE COUNT          815 a          560 c          511 g          825 t
ORIGIN      
        1 gtaactgaat gttttattgc attggaaaca aggttttgca taatggagag cagcattttt
       61 tcatctgcaa aaacctgaat gtcctcttcg atttccacat gcagttgtat ggaagcttta
      121 gcagctactt ctcctaaagt atcaaaaacc ttcttcacat atggcaacag gtggatttgc
      181 ctgggggtaa acacctccga ggcatatttg attcttgccc attccaccag gtagtccaac
      241 atggccagct ctttatttgc caattcatac tggctatcga gcatagtttt taattgatcc
      301 tcctccatgt tttgataatt ggtttttaac aattcggcca tttggataat tccacttaat
      361 gggcttctta aatcatgaga taggatggca aggatgttct ccttatgggt attcagctcc
      421 tccagttctt tgatatatgc ctgaattgct tgctccgatt tttgtctttc agtcaggtcc
      481 ctgagtattt taacaaagcc cagcaattca ccctctttgc ccttaagtgg aaaaattacc
      541 tcataggcat aaaacctact accgtcctta tgcacgctcc acctgtaatc tgcaactctt
      601 ccctctttca atgcagtctc aatttttgtt tggataatgc ttttttttct gtcctcttcc
      661 gtataaatca tttcgatatg tttaccaata acttcctcgt tttcataacc aaacattttt
      721 gaagagcctt cattccagct gttaatacgc aattctttgt ctgtggtgaa aatggaatag
      781 tcttgaaggc tatcaataat ttgactgtaa aattcaaatg tagaaatgaa ttcaggcaaa
      841 taggttccct tatcaatctg gactttgttc attacatgga tttataagaa tttaaaaacg
      901 aataccacat tagaaattag atccttcaac aaaccaaatg atgataatct aataaacaat
      961 tcaatggatt tcaacagtca gatattttct ttctcccctt tctttggtgt acggattgct
     1021 gccgacgtgc aaatattttc attacgaaaa ttaaatcaga aagttatctg cccgcctcgc
     1081 aattgtcgca ataccggttt ttgaataaac ataaaactac aaatccaaaa tatttgccat
     1141 tgggagttgt taattcgagg ccttaatgat tataaattca aaatatttac acatacttgt
     1201 actgacatta ggtcatagga aactgcgcgt gcgggattat taatcaaatt gcctgtatat
     1261 atttagtttt tatagccaac atgcctatta atatcagtca gttatatgta atattttaca
     1321 tcaacaatca ccctagaaat gaaacgtata ataattttac tagccttaat gtttttttac
     1381 acagtgggaa ttggccaggt aactatcaat gaatttatgg cctccaatac atccactgtc
     1441 aaagatcctg attacaataa tgacgcagac tggattgaat tgtacaataa cggggatacg
     1501 ccagtaaact taaacggcta ttttctgact gataatttaa gcaaacccaa taaatggact
     1561 attaccaacc tgaccataga acccaaggga tttgcaattt tatgggccga ttcaaaagat
     1621 tctgccagtc acaccaattt caacctgagc gccactgctg aacagattgg attgtttaaa
     1681 ccggatttat ccattgtgga taccctcagt tacgggttac aggaccccaa tatttcgtat
     1741 ggaagatcaa ctgacggtgg cagcgtctgg acattattta ctaaagcaac tcccggagca
     1801 acaaacaatt cgaccagcta tacgggaatc gtaaaaagtg atcctagttt ttcacttccc
     1861 ggaggtgtct atcacagttc gttaaccctt actctaaaaa gcatttttgg aggtgatgtc
     1921 cgcttcaccc ttgatggaac tgaacccaat gagcagtcgc caattgccag tgcccccatc
     1981 acaattgaca aaaacacagt tgtacgggca agaattcata aatcaggcga gattttgggt
     2041 cctgtcaata catatactta tctgatcgat actgaaaata aaatcaataa actgcctatc
     2101 gtttgtgtga gttcagaccc ggccaatttc tgggatccgg taaaaggcat ttacacggta
     2161 cataccgtaa agccggattg ggagatcccg gttaatattg aactttatga aaatgacggc
     2221 agaacgggag ccgccttcaa tttaaaagct ggggtaaaat caaccgggct atactcatgg
     2281 cagttgccgg aaaagatgct gggggtttca tttcgaaaag aatacgggac cagtaagctg
     2341 gaatatcccc tgatttttga caaggaacga aaaacattca aaaccttctc cctcagggcc
     2401 tctggaagtg actggggcaa taccatgttt cgcgatggca tgattcaaag cgccgctgta
     2461 gaaaatacca atatcgacga ttcaggtttc agggcttgcg tggtttatat caacgggcag
     2521 tacatgggta ttcacaatat ccgggagaaa attgatgaag attatatcgt gggcaaccat
     2581 ggtctggagt caggaagttt tgacatgatt gaagagaccg atgcaggcca ttatgcggaa
     2641 acaggtgatt tcgtggccaa cgactatttt ctttctctta cagcaaagga tttatcgaat
     2701 caggccaatt a
//
LOCUS       DATDNM010000128         4158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_977749, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000128 DATDNM010000000
VERSION     DATDNM010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4158
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_977749"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2157)
                     /locus_tag="VI413_02165"
     CDS             complement(<1..2157)
                     /locus_tag="VI413_02165"
                     /inference="COORDINATES: protein motif:HMM:NF012475.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HEY6913453.1"
                     /translation="MKKHNSFLLSLALLTSFSGITNLKAQQTSAASKAPQKTVAPASA
                     FMTNYDEPYRPQFHFSPRVGWMNDINGVWFYNGVYHVSYQANPHGLEWANMHWGHATS
                     TDMMHWVEQPVMLEPGVNVPGACYSGSTVVDVNNTSGFQTGTNPPIVTIYTATTKGTC
                     LAYSNDLGATWVAYAGNPVAVGTTNESTRDPHVFWYAPTSKWVCLLYENGTSFYTSPD
                     LKTWTKASNISFGYECPDFFELPVDDGATKKWVLLEADSKYYIGTFNGITFTPDAGGP
                     YTMVNNSGIGAGFYASQTFFTSNFPGNRIIQMGWMSGLAAGNTAPWTHNATFPCEVKL
                     KTFPEGVRAARTPISEISNLYGDTQTWDAQTIGSNQNLFAGKMSKCYDIEAVIDVSGT
                     TATSVTFQLANRTFTYDLQNQTFLGATLKPINNLVKIRLLVDRGEFEAFGNDGQLSYA
                     QNFKFSPSNGTISMIGNGSIKLVSARYSAVNRVWPGAACTAYADDPVSSGTTYTGNWI
                     VASGESGYYNTTLHVSNTTGAYAEYSFNGTQISWYGLKNNDLGMATVYIDGALAADNI
                     DCYSTERITQQLFTKTDLPAGNHIIKVAVKGTKNAASAGTALVHDYIGTVASLTSPTA
                     ADDTDPKTAYTGTWVTDVNGIYYNTTCHVTNTTGSYFQYDFTGTQVYWYGLKNNDLGM
                     AAVYIDGVLAADNIDCYSNTKAINLLFCKTNLSNTTH"
     gene            2750..3448
                     /locus_tag="VI413_02170"
     CDS             2750..3448
                     /locus_tag="VI413_02170"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047689 - aspartate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HEY6913454.1"
                     /translation="MKKIGIIGGLGPEATVDYYKEIINSFKNGSSDLNYPEIIVYSVN
                     MSEFIGLMRLRKYELATAYLSERIDSLKHAGAEFAALSANTPHQLFDELREKSTIPLI
                     SIVEATCEEAKKRGAKRAGLFGTEFTMNASFFPDVFKKEGIEVIMPDKEDKELINYKL
                     FSEIELGIFTDDTRELLIGIIEKMVREQHIDSLILGCTEFPLILDKETYAGIPMLNTT
                     KIHVESIVKYCNGN"
     gene            3922..>4158
                     /locus_tag="VI413_02175"
     CDS             3922..>4158
                     /locus_tag="VI413_02175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913455.1"
                     /translation="MKTDFNFVAPVYDEIFEREQQKEFSKVIYFGNGIELEEASGKIT
                     RLLKNEIHEEYLCFDSGAEVRIDRIISINGIPGPA"
BASE COUNT         1294 a          806 c          817 g         1241 t
ORIGIN      
        1 gtgcgtagta tttgaaaggt ttgttttgca aaataacagg tttattgctt tggtgttgct
       61 gtagcaatca atattatctg ccgccaacac cccgtcaata taaacggccg ccatacctaa
      121 gtcgttgttt ttaagaccat accaataaac ttgcgtaccg gtgaaatcat actgaaaata
      181 agatccggta gtattagtca cgtgacaagt ggtgttgtaa tagattccat ttacatccgt
      241 aacccaggtt ccggtgtaag ctgttttagg gtcagtatca tcagctgcgg taggcgatgt
      301 caacgatgca actgtaccaa tatagtcatg tacaagagca gttccagcgg atgcagcatt
      361 ttttgttcct ttaactgcca ctttaataat atggttgccg gcaggaagat ctgtttttgt
      421 gaaaagttgc tgagtaatac gttcggtact gtaacaatca atattatcag ccgccaacgc
      481 cccgtcaata taaacggttg ccatacctaa atcattattt ttgagaccgt accatgaaat
      541 ttgtgttcca ttgaaactat attcagcata agcaccggta gtattgctta catgtaaagt
      601 ggtattgtaa tagccgcttt cgcctgaagc aacaatccag tttccggtat atgttgttcc
      661 actgcttaca ggatcatcgg catatgcagt acatgctgca cccggccata cgcgatttac
      721 ggcgctgtat cgtgccgaaa cgagtttgat acttccattt ccaatcattg aaatagtacc
      781 gttcgatggc gaaaacttaa aattctgtgc atacgataat tgcccatcgt ttccaaaggc
      841 ttcaaactct ccacggtcaa ctaacaaccg gattttcacc agattattaa tcggtttaag
      901 agttgcccca aggaaagtct ggttttgcaa atcgtatgta aacgttctgt tagccaattg
      961 gaaagtgaca cttgtagcag ttgtacccga cacatcaatc acagcttcaa tatcgtagca
     1021 tttcgacatt ttaccggcaa acaagttctg gttcgatcca attgtctgag catcccatgt
     1081 ttgggtatct ccatatagat tgctgatttc cgaaataggc gttcttgctg cccttacacc
     1141 ttccgggaat gtttttagtt ttacttcgca aggaaatgtg gcattgtgag tccagggagc
     1201 agtatttccg gctgccaagc cagacatcca acccatttga ataattctat tgcctgggaa
     1261 gttacttgta aaaaatgtct gtgaagcgta aaatccggca ccgattccag agttattaac
     1321 catagtgtat ggtccgcctg catcgggcgt aaaagtaatt ccgttgaaag tgccgatata
     1381 atattttgaa tcagcttcga gtaaaaccca ttttttggta gccccatcgt ctacaggcag
     1441 ttcaaaaaag tcaggacact cataaccaaa actaatgttg cttgccttag tccatgtttt
     1501 caaatcgggc gaagtgtaga aactggttcc attctcgtat aaaaggcaaa cccacttact
     1561 agtcggagca taccaaaaca catgcgggtc gcgggtcgat tcgttagtgg tacccacagc
     1621 caccggattg ccggcataag caacccaggt tgcacccaaa tcgttgctat aagcaagaca
     1681 tgtacctttt gttgttgctg tataaatcgt tactataggt ggatttgtac ccgtttgaaa
     1741 accggaagta ttatttacgt ccaccaccgt tgagccggaa taacacgcac ccggaacatt
     1801 tacgcccggt tccagcataa caggctgttc cacccagtgc atcatatcgg tgctggttgc
     1861 atgcccccag tgcatattgg cccattccaa cccatgtgga tttgcctggt atgaaacgtg
     1921 atacacaccg ttgtagaacc agactccatt gatatcgttc atccacccta ctcgtggaga
     1981 gaaatgaaat tgtggacgat aaggttcgtc gtaatttgtc ataaatgccg acgcgggagc
     2041 aacagttttc tgaggtgctt ttgatgctgc tgaagtttgc tgggctttca aattagtaat
     2101 tcctgaaaat gacgttaaaa gtgccaggct tagcaaaaaa gagttgtgtt ttttcataaa
     2161 atcttatttt aaaataaata gcatttattc gataatcaaa tttatatatg attcgaaata
     2221 atcagaatga ttaggttgtc tgttttattg catgataagc cctatttaaa ttaaagacta
     2281 ccagatttcg gaactttcaa attaatatga caaaattata attaagaata atatgttttg
     2341 agtaataact ggccgaaaaa caatacaaac aaataaaata caatcattta atatagatat
     2401 tttcatattc tgttttctga aagtacagtt gaatttagct ataaatgaga cctaaaaaat
     2461 agtgtaaata tgctcaacta actatcaaat ttgattcatc aatatgtaat tttgatacaa
     2521 catcttcaat tttattgtaa aaaccagctt tttaaaatat ccgaatctga cttttctttt
     2581 tttcttcctt ttcaaaccaa tttaaatttc cacggaaatt taaatttatc tcattcttta
     2641 gttataagca gtaccagcac gcaaacttaa tctggtcagg aggcgttatt attcaatgtg
     2701 atttttcggg aacaataatc ctttaaacag aatataaaga gaatagaata tgaagaaaat
     2761 tggaattatc ggagggttag gccctgaagc aactgttgat tactacaagg aaataatcaa
     2821 ctcattcaag aatggaagca gcgatttaaa ttatcccgaa attatagttt atagcgtgaa
     2881 tatgtccgaa tttattggcc taatgagact cagaaaatat gaattggcta ccgcttattt
     2941 gtcggaaagg attgacagcc tgaaacacgc cggagccgaa tttgctgcat taagtgccaa
     3001 cacgccccat caactgttcg acgagctacg cgaaaaatcg accatcccat tgatcagtat
     3061 tgttgaagct acctgcgaag aagctaaaaa aagaggagca aaacgtgccg gcttattcgg
     3121 gacggagttc accatgaatg cctctttctt ccctgatgta ttcaaaaaag aaggaattga
     3181 ggttattatg cccgacaaag aagataaaga attgattaat tataagttat tcagcgaaat
     3241 tgaacttggg atctttactg atgatacgcg tgaattattg attggaatta tcgaaaaaat
     3301 ggtcagggag cagcatatcg actctttgat actgggttgc actgagtttc cattaatttt
     3361 ggacaaagaa acttatgcgg gcattccgat gttgaacacc accaaaattc atgtagaatc
     3421 aattgtaaag tattgcaatg gcaattgatt attcctatca gtcaaaagat aaaatgttta
     3481 cccgcaaagc ttgctgattc aacaagaact attatttgta aaacagttga aaaatctata
     3541 ctaagattgg actgagcctc tccctcatgc ttgcctgcat tgtattggtt atttgaccat
     3601 tcaactggca ccgatatagt tactttgaca cgtacgtgtc aagcactttg acaggtatga
     3661 gtcaaacacc ttgacaggta cctgtcaaag tgcttaatgt atccttatca aagtatcata
     3721 tacgacttag atagatagta aataaggagc aaatgcagta gtttatggtt cggttagtga
     3781 aatagtcctt cctgcagatt gcggcctccg tgttttgctt taccggggcg gcgttgattt
     3841 accaagtctt gataaaatcg taggacactt tgcagataaa cattaaagag aataataaaa
     3901 caactatcta ataacaagat aatgaaaaca gatttcaatt tcgtagctcc tgtttacgat
     3961 gaaatatttg aaagagaaca gcaaaaggaa ttttcaaaag tgatttattt tggaaatggc
     4021 attgaactgg aagaagcttc cggcaaaata acccggttgc tgaagaatga aatacatgag
     4081 gaatacttgt gttttgactc cggagcagaa gtgcgtatag accgcatcat atctataaat
     4141 ggaataccag gcccggct
//
LOCUS       DATDNM010000129         4246 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1405630, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000129 DATDNM010000000
VERSION     DATDNM010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4246
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1405630"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(449..676)
                     /locus_tag="VI413_02180"
     CDS             complement(449..676)
                     /locus_tag="VI413_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019539908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5652 family protein"
                     /protein_id="HEY6913456.1"
                     /translation="MWCNLENFHWKLAPFEWLILVLILWDLVWKAFALWKAARNNHVV
                     WFICIAIFNTIGILPIIYIMRDIKGKLSKEL"
     gene            complement(853..1866)
                     /locus_tag="VI413_02185"
     CDS             complement(853..1866)
                     /locus_tag="VI413_02185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913457.1"
                     /translation="MSNSPCFLRSFRHFFVILLILPLGLYSQIQNENSNQDNEITIFV
                     IPSVAPIDWSNPAMLYKTTLNSYIKSIFRKNYYAIGHTIARVSSPILPAPRFFAMSGK
                     VFSEKPKLVLIKKNGLGTLGVTMQGHVEPEMNIIKSLKLYSSRNMVAYIKFRVPQEAV
                     FRVLEFLEQFQKKTINGLAPGDLYNGATWPRYRNEGSGCSAFGMSVLDVANLLPGESC
                     SWRICVKVPINLIGGEINNNKKVKLSTILKAKNWYEGVGLVDVDYVDYNVFDPSLIFQ
                     WIKNKQTGNDPDYQPDSESGMSGLVVDRRDIVYENDDSVFQQRKDSGLFVKQYYRGLR
                     SMK"
     gene            2491..2859
                     /locus_tag="VI413_02190"
     CDS             2491..2859
                     /locus_tag="VI413_02190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913458.1"
                     /translation="MKKMLVLVMVLVASAAHTFAMNPGDYTAFYKLNNKVAYTALIGY
                     IDADREQAAFLQHVFNVTAEEMKVAVQKGNETAAENVLNYNLRNTKCILSEEQYRKYL
                     SFVNVYLNNENNFALLTENK"
     gene            2972..3337
                     /locus_tag="VI413_02195"
     CDS             2972..3337
                     /locus_tag="VI413_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913459.1"
                     /translation="MKKILVTIMVLVAGATSTYAINPGDYEVFNKLNDNSTFNGLVRY
                     LNADSEQAESLKYVFSVAGNKIQAALKSENEADAEKAMNFNLGNAKNILTDYQYKKYL
                     TIINLTINNRYNEVLLTEK"
     gene            3553..>4246
                     /locus_tag="VI413_02200"
     CDS             3553..>4246
                     /locus_tag="VI413_02200"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6913460.1"
                     /translation="MYDRLIQSQSENTEFLPLTIKEIIFSPLSHRSENSNVICSHIEN
                     RLITITLSTFRKITCTISDKLISLGLKNGDTILLASFSSSNELANALIFAAATCTGIR
                     VFVPMFPEPSEFGNWKKQTDFGCIIMPYRETLQLKGHEREKEVIYTLQKSCNENNIPF
                     LDTQEDLFVFELLLQTISNPNQLDRAKIPQTTITPQTEAVIFTTSGTSGISKLLVYTH
                     QALANCCQAWQQA"
BASE COUNT         1462 a          814 c          666 g         1304 t
ORIGIN      
        1 aagtaatata attttcagtt attacaacca gtttatcaag aaaaagttca aaaaaacttc
       61 aaattaatac tgttgtccga caaaaagctt acattttcag catttggggg tgttgtgcta
      121 taattctttt gatagtttat agttggtagt tggtagttta aaacaaaaaa atcctgctca
      181 tgtttgagca ggattttcat gtattagtta tttattgttt gttttttaca taaagaatat
      241 cctgctctca cttactaaag taaaagtaaa aataaaaata tgtaaaaaat cggtttacca
      301 taatgatgtt gtctttttcc ttagacgctg caaaagtaat ataattttca attattacaa
      361 ccggtttatc aataaaaagt tcaaaaaaac ttcaaattaa tacacttgca ggcctaaaag
      421 cttacatttt cagcatttcg ggtttgtgct ataattcttt cgaaagtttt cctttgatat
      481 cacgcatgat atagataata ggcaaaattc caatcgtatt gaaaatagca atacatataa
      541 accaaacaac atgattgttc cgggcggctt tccacaacgc aaaagccttc cacaccagat
      601 cccacagaat aagtaccaat atcaaccatt caaacggagc gagtttccaa tggaaatttt
      661 caagattgca ccacataatg tttaattttt aaaggtaaaa cttcaaacgc aaggaaatga
      721 tctatcataa tgaatatgtt gcaaatttaa taaattatta ctaattctat catctttagc
      781 tattaatttt atctttttta tacataggta gttaaatggg gaaaacacat ttttaaatga
      841 caaataacac cgtcatttca tacttctcaa accgcgataa tactgcttta caaacaagcc
      901 ggagtctttc cgctgctgga aaacagaatc atcattttcg taaactatat ctcgcctatc
      961 cacaaccaaa ccggacatac cgctttcgct atctggctga taatccgggt cattaccggt
     1021 ttgtttattc tttatccact gaaatatcag acttggatca aaaacattat agtcaacata
     1081 atccacatca actaacccta ccccctcgta ccagttcttg gccttcagta tagtactcaa
     1141 ttttaccttt ttattattat ttatttctcc accaatcaaa ttaatgggca ctttcacaca
     1201 gatccgccaa ctacacgact caccggggag gagattcgcc acatccaata ccgacattcc
     1261 aaaagcggaa cagcccgaac cttcatttcg atagcggggc cacgtagctc cgttatacaa
     1321 atcgccgggt gctaagccat taatagtctt tttctgaaac tgctccagaa attccaatac
     1381 ccgaaaaaca gcttcttgtg gcactctgaa tttaatataa gccaccatat ttcggctcga
     1441 atataatttc aggcttttta tgatattcat ttccggttct acatgcccct gcatagtaac
     1501 acccaacgta ccaagaccat ttttctttat caatacaagt ttgggctttt cggaaaatac
     1561 ctttccactc atggcaaaaa aacgtggagc aggcagaatg ggcgaactta cccttgcaat
     1621 ggtatgtccg atagcataat aattctttcg aaaaatggat ttaatgtaac tgttcaacgt
     1681 ggttttgtaa agcatagctg gatttgacca atcaatcgga gccacagacg gaataacaaa
     1741 aatagttatt tcattatcct gattgctgtt ttcgttctga atttgcgaat acaatcctag
     1801 cggtaaaatc agaagtatta cgaaaaagtg acggaacgaa cgcaggaaac agggggagtt
     1861 tgacatagca ttaaagcgtt aatagattaa acagtatgca aacagatata aatatatatt
     1921 aataaacaaa atcaattctg atattgtttc caaaatacta aaaaaatgta tactaacacc
     1981 tgtttgtctc atcactcata cttttttggg ctaatcggta tttttatctg tacaaaatca
     2041 ctcaagattt cacctgtttt attttttccg gaaattcctc atttcaccca aatctctcaa
     2101 taattcaatc taatagactg tactactgaa atatagccct tatttataca atttacccct
     2161 tatttcttag ttcagtggat tgaaattatt ctgtcatttt taaatgtatt ttatacactt
     2221 acaaaacatt acataactca ttagaaataa aagacatacc acacattttc aatttaacta
     2281 aaagttaaac ttttaggccc aactaattat ttaactcgaa atatgcgatt tttatgttgt
     2341 aaaacatata attttgcatc gtcaataaga aagaaattat tattgacgaa aatctaatac
     2401 aaagcaatac ccgtaataaa atcacatggg gattctttgt attttttgtt tttaaaagat
     2461 aacaataggt gttatttaaa tttttatcgt atgaaaaaga tgttagtttt agttatggta
     2521 ttagttgcaa gtgcagctca tacattcgca atgaatccgg gtgattacac cgcattttac
     2581 aagttgaaca acaaagtggc ctacactgcc ctgatcggat atattgatgc agaccgcgaa
     2641 caagctgctt tcttgcaaca tgtatttaat gtgacagctg aagaaatgaa agtggccgtt
     2701 cagaaaggca atgaaacagc cgctgaaaat gtactgaact acaatttgcg caacacaaag
     2761 tgtattctgt ctgaagaaca atacagaaaa tacttgtcat tcgtaaatgt gtatttaaac
     2821 aacgaaaata acttcgcatt actcaccgag aataaatgac gaaggtaggt attagaaaaa
     2881 aaagattatg tattataaaa gttaaggtta tgaaacgagc tccgttttta cgggcgagtt
     2941 ccatacgaca actctaaaaa attattaacg tatgaaaaag attttagtta caataatggt
     3001 tttggttgcg ggagcgactt ctacctatgc cattaatccg ggcgattacg aagtgtttaa
     3061 taaattgaat gacaattcca catttaatgg actggttcgc tacctgaatg ctgacagtga
     3121 acaagcggaa agcttgaaat atgttttctc tgttgccgga aataaaatac aggcagcatt
     3181 gaaatctgaa aatgaagctg atgctgaaaa agcaatgaat tttaatctgg gaaatgcaaa
     3241 aaacattctc acagattatc aatataaaaa gtatctgaca attatcaact taacgattaa
     3301 caacagatac aacgaggtat tactgactga aaaataaatt taaattgttt acaacaaggt
     3361 ttgagggagc gtatatcgat acgttccctc tttttatatt atattttacc ctcaataaat
     3421 cgagcagccg aatccggatt cattattttt acaaaaataa gaacaaagta tttgaattct
     3481 gcgtttaata tttaaaaatc aactcattaa ttaggtattt tgtcgttata ttttgcaata
     3541 atttgtaaaa atatgtatga taggctaatt caatcccaaa gcgaaaacac agaatttctg
     3601 ccgctgacaa taaaagaaat tattttttcg ccactctccc accggagcga aaactccaat
     3661 gtgatctgca gtcatattga aaaccggctt atcaccatca ccctctcaac tttccgaaaa
     3721 atcacctgta ctatttccga taaattaata tcattggggc tgaaaaatgg cgacacaatc
     3781 ttgctggcct cctttagcag ttccaatgaa ttggccaacg ccctgatttt tgctgccgca
     3841 acctgcacag gaatacgtgt tttcgtaccc atgtttcccg aaccatctga gttcggcaac
     3901 tggaaaaagc agactgattt tggttgtatc ataatgcctt atcgcgagac cctccaactc
     3961 aaaggccacg aaagagagaa agaagtaatt tacacattac aaaaaagttg caatgaaaat
     4021 aatatcccct ttttagatac acaggaagat ttatttgtct ttgaacttct actgcaaaca
     4081 ataagcaacc ccaaccaatt ggaccgggca aaaattccgc agaccactat tactccacag
     4141 acagaggcgg taattttcac cacttcggga accagcggta ttagtaaact attggtttat
     4201 acccatcaag ccctggccaa ctgctgccag gcgtggcaac aggccg
//
LOCUS       DATDNM010000130         2504 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_17068, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000130 DATDNM010000000
VERSION     DATDNM010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17068"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..235
                     /locus_tag="VI413_02205"
     CDS             <1..235
                     /locus_tag="VI413_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HEY6913461.1"
                     /translation="DCLYHEATFMEDELTRCKQTEHSTARQAAEIALKANVKKLIIGH
                     YSARYPNQNEILNEAKNVFKNTILGEDMKAYEI"
     gene            complement(296..550)
                     /locus_tag="VI413_02210"
     CDS             complement(296..550)
                     /locus_tag="VI413_02210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913462.1"
                     /translation="MKLVPTSNPKEQEIDLDALIMRKAELKGQIQNQKQQIIVSSKNL
                     FSPASLPIYLHRAFSKGLTLVDGVMVGFKVIKTIRNIFRR"
     gene            complement(555..914)
                     /locus_tag="VI413_02215"
     CDS             complement(555..914)
                     /locus_tag="VI413_02215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008760687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEY6913463.1"
                     /translation="MPNNQEPAENLQQLYADVKKYVELQTEYVKIEFVEKLTIILSAL
                     LIIGLIIVLVIAALFYLFFSLAYTLQPLLGSLAASFAVISCIYVLLIGIFLMFRKQVV
                     INPLVKFLSNLFLKKQE"
     gene            complement(940..1143)
                     /locus_tag="VI413_02220"
     CDS             complement(940..1143)
                     /locus_tag="VI413_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEY6913464.1"
                     /translation="MKNSVGIIAAFLGGALVGGVLGLLFAPESGEDTRKKIVEALEKK
                     GIKLNKKEMDDLVDEIKSQVTTE"
     gene            complement(1177..2058)
                     /gene="era"
                     /locus_tag="VI413_02225"
     CDS             complement(1177..2058)
                     /gene="era"
                     /locus_tag="VI413_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018710652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEY6913465.1"
                     /translation="MHKSGFVNIVGNPNVGKSTLMNALVGERISIITSKAQTTRHRIL
                     GIVNGDDFQIVYSDTPGVLKPNYRLQESMLNFSRSALTDADVLLYVTDVFDSYEKNED
                     FVEKVKLNPAPLLLIINKIDLIDEEKLVVLVEKWKELLPKAEIYPVSAIEKFNVDTLF
                     SRIKALLPESPAFFDKDQLTDKPARFFVTEIIREKILLNYDKEIPYSVEVEVEQFQED
                     DRLIRINAVIYAERDSQKGILIGHGGKSLKKVGTEARKDMEMFFDKKVFLELYVKVEK
                     DWRNKDIKLKGFGYNLD"
     gene            2197..>2504
                     /locus_tag="VI413_02230"
     CDS             2197..>2504
                     /locus_tag="VI413_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6913466.1"
                     /translation="MTFSTNKLYELTRHLKLVFIVIAVGIVLASTIFTNRLANSLAAE
                     EKKKVEIWAEAIRQSVLLEEGTNTDLIVKIIEGNTTIPIIMADAKNNVISSLNIIEPK
                     T"
BASE COUNT          842 a          499 c          381 g          782 t
ORIGIN      
        1 ggattgctta tatcacgaag ctacttttat ggaagatgag ctgactcgtt gcaaacagac
       61 cgaacattct actgctcgcc aggcagcgga aattgcccta aaagccaacg taaaaaaact
      121 tatcatcggg cactattccg cacgctatcc caatcagaac gagatactta atgaagcaaa
      181 aaacgtattt aagaacacca tactaggtga agatatgaaa gcatatgaaa tataatttat
      241 tcaaatgaaa aaaggcggta aaccgccttt tttatcttgt attgttgcca aaaagttatc
      301 ttctgaaaat attacgaatg gtttttataa ctttaaaacc gaccatcaca ccatcaacca
      361 aagttaaccc tttgctaaag gcccggtgaa ggtaaattgg cagcgaagca ggcgaaaaca
      421 aattttttga agagacaata atttgttgct tctgattctg tatttgcccc tttaattcgg
      481 ccttacgcat gattaaagca tccaaatcaa tttcttgttc tttggggttt gaagtcggaa
      541 ctaatttcat aatactactc ttgttttttc aaaaataaat tcgacaaaaa tttaaccaat
      601 ggattgataa caacctgctt acgaaacatc agaaaaatgc caatcaaaag aacatatata
      661 caggaaatga ctgcaaaact agctgccaaa ctaccaagca aaggttgaag cgtataagct
      721 aaggaaaaaa acaagtaaaa aagtgctgca attaccaaca caattattaa ccctattatc
      781 aacaaagcag aaagtataat tgtcagtttc tcaacaaact ctatttttac atattctgtt
      841 tgcagctcaa catacttttt tacgtcggcg tacaattgtt gtaaattctc ggccggttcc
      901 tgattatttg gcatggtaaa agttattaat aaatcatttc tattctgttg ttacttgtga
      961 tttaatttca tcaaccaaat catccatttc ctttttattc aactttattc ctttcttttc
     1021 tagtgcctcc acaatctttt ttcgggtatc ttctccactt tcgggagcga acaacaaacc
     1081 caaaacaccc cctacaagag ctccacctaa aaatgctgca ataataccaa ctgaattttt
     1141 cataatagta taactttaaa ttatcagcaa aattaattaa tccagattat atccaaaccc
     1201 tttaagtttg atatctttgt tacgccagtc tttttccact tttacataaa gttccaaaaa
     1261 aaccttcttg tcaaaaaaca tttccatgtc tttacgagct tcagttccaa cctttttcag
     1321 tgactttcca ccatggccaa tgagaattcc tttttgtgag tcacgttcgg cataaatcac
     1381 tgcatttata cgaattaaac gatcatcttc ctgaaattgt tcaacttcta cctctacaga
     1441 ataaggaatt tccttgtcat aattcaataa aattttctca cgaataattt cagtcacaaa
     1501 aaatcgggcc ggcttatccg tcaactgatc tttatcaaaa aatgcaggcg attcgggcaa
     1561 aagagcttta attcggctaa acaaagtatc aacattaaac ttctcaatag ctgaaactgg
     1621 ataaatttcc gctttcggga gtaactcttt ccatttttcg accaatacaa cgagcttttc
     1681 ttcgtcaatc aaatctattt tattaattat gagcaaaagc ggagccggat taagtttcac
     1741 cttttcaaca aagtcttcgt tcttttcgta cgaatcgaaa acatcagtta cataaagaag
     1801 cacatctgca tctgttaatg cagaacggga aaagttaagc atcgactcct gcaagcgata
     1861 attaggcttt agtacccccg gtgtgtcaga ataaacgatc tgaaaatcgt cgccatttac
     1921 tatccctaaa atacgatgac gcgtagtttg tgctttggaa gtgataatgg aaattcgctc
     1981 accaaccaga gcattcatta atgttgactt acctacgttt ggattaccta ctatatttac
     2041 gaaaccggat ttatgcatga ttattctgtt atctgttgta ttttctgcaa agatacgata
     2101 ttttatgcag atgtaaaatt gaagctcact ttcatacttt tttagtatat ttggcgttcc
     2161 tattttcaaa aatcagaact ccaaaaacta tagtgaatga catttagtac caacaaatta
     2221 tatgaattaa cgcgccatct gaaactggtt tttatcgtca ttgctgtcgg tattgtcttg
     2281 gcatcaacta tctttacaaa tcggttggca aattcgctgg cagctgagga aaagaaaaaa
     2341 gtagaaatct gggctgaggc tatccgtcaa tctgtcttac ttgaagaagg aacaaataca
     2401 gatctgattg taaaaattat tgaagggaat acaaccatcc ctattataat ggcagatgca
     2461 aaaaacaatg taatttcatc gttaaatatc attgaaccaa aaac
//
LOCUS       DATDNM010000131         5500 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_657618, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000131 DATDNM010000000
VERSION     DATDNM010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5500
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_657618"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VI413_02235"
     CDS             <1..188
                     /locus_tag="VI413_02235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446311.1"
                     /note="NADH-dependent; catalyzes the conversion of
                     pyrimidines to 5,6-dihydro compounds in pyrimidine
                     degradation; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dihydropyrimidine dehydrogenase"
                     /protein_id="HEY6913467.1"
                     /translation="VEGLEVSKWGTVVVNNDTMQSAVPIIFAGGDIVRGGATVILAMG
                     DGRKAAKSMDEWIKSNN"
     gene            complement(266..715)
                     /locus_tag="VI413_02240"
     CDS             complement(266..715)
                     /locus_tag="VI413_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913468.1"
                     /translation="MKTKIVILLLSAFAILNTVKASDPVYLEVISNPSKSVNYTVGIY
                     PSKLSNNEAGDRTFLTMYLINDGTSDLVWTRMNHILAVLKNNTLVRNYNTENDSDAYS
                     CAYIVPLAKGFHEQILCFEGKFTANDIANIYLQENDEIYQLDYSSGE"
     gene            complement(825..1040)
                     /locus_tag="VI413_02245"
     CDS             complement(825..1040)
                     /locus_tag="VI413_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913469.1"
                     /translation="MNEEQNYDCKNRNHNHPATASGGAVYGLGMIGAAIYFIAKATTF
                     WVGVLGFLKALVWPAILVFEALRALGA"
     gene            complement(1037..1525)
                     /locus_tag="VI413_02250"
     CDS             complement(1037..1525)
                     /locus_tag="VI413_02250"
                     /inference="COORDINATES: protein motif:HMM:NF042809.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HEY6913470.1"
                     /translation="MSAETKDFECCPPFDPLPWDDKMHRWDNKLFIKDKVFTCFYIPL
                     NFGGAMKRLNKRVEKAGAEIPDWLCLSDHTSKWNMDLYLAVDKEIPGTENVKLSGTFY
                     SRVYEGDFNQTGKWCTDFETKAKEKNLKIEKWYMWYTTCPKCAKKYGKNYTVIIGKIQ
                     PL"
     gene            complement(1687..3303)
                     /locus_tag="VI413_02255"
     CDS             complement(1687..3303)
                     /locus_tag="VI413_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006800470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEY6913471.1"
                     /translation="MITVSNLAIQFGKRVLFSDVNLKFTAGNCYGVIGANGAGKSTLI
                     RMLSGDLDPTRGTIQFGPGERLSVLKQDHFEFDEFTVLDTVMMGHTVLWQVKEEKDAI
                     YLKEDFSDADGLRASELEDKFSEMNGWNAESEAASLLSGLGIKEDLHYQLMKELSGME
                     KVRVLLARALFGKPDNLLLDEPTNDLDVETVMWLENYLANYENTVLVVSHDRHFLDAV
                     STHTVDIDFGKVQAFAGNYSFWYESSQLALRQQQNQNKKAEEKKKELEEFIRRFSANV
                     AKSKQATSRKKMLEKLNIDEIQPSTRKYPGIIFTPEREPGNMVLEIAGLGKTLEDGTV
                     LFKDVNFNVEKNDKIVFLARDPRAMTAFFEIINDHDKNHEGTFNWGITITHAYLPLDN
                     SEFFNTDLNLVDWLGQFSSDTTESFIRGYLGKMLFAGEEIYKKASVLSGGEKMRCMIS
                     RMMLKNANVMVLDSPANHLDLESIQAFNNTLVNFKGNVLMASHDREFIQTVCNRIIEL
                     TPKGIIDKQMDYDDYVTSEDVKAIRERMYK"
     gene            complement(3462..4649)
                     /locus_tag="VI413_02260"
     CDS             complement(3462..4649)
                     /locus_tag="VI413_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEY6913472.1"
                     /translation="MSQLSNVLGQYDAPQQAKAMGVYPYFRPIESDQDTVVTIDGKRV
                     LMFGSNSYLGLTNHPRLKEASIKAIEKYGTGCAGSRFLNGTLDIHLELEERLAKLVHK
                     EGALVYATGFTVNSGVVPCVTGREDYLIFDEFDHASIIEGKRLSFSKQLKYRHNDMDA
                     LEKLLKKCEPERLKLIVIDGVFSMEGDVAKLPEIVELSKKYNASIYVDEAHSLGVFGK
                     TGAGICEHFGVSNDVDLIMGTFSKSLGTIGGFIAADNNIINYLKHNSRTLIFSASITP
                     ASTGCVLAALDVMEEETWRKDALWANTNRAKAGFLKAGFEIGHTETPIIPLYVRDNTK
                     TFLLTKTLMDDGVFVNPVVSPAVRSEDSLIRYSLMATHTFDQIDESIEKISKAARTLG
                     IIE"
     gene            4779..5264
                     /locus_tag="VI413_02265"
     CDS             4779..5264
                     /locus_tag="VI413_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEY6913473.1"
                     /translation="MSKQLDYKLLPVLAAKAAPEWKHFLAKNKKKLEGMDLQVHALHD
                     KISERTDCLQCANCCRSLGPRITDKDVERMAKALRLKAADVISKYLRIDEDGDMVFQS
                     MPCPFLGDDNYCAIYENRPKACREYPHTDRKRFYQIYNLSIKNAYTCPIVYEVLEELR
                     K"
BASE COUNT         1685 a         1177 c          997 g         1641 t
ORIGIN      
        1 cggtagaagg acttgaagtt tccaaatggg gaactgtggt ggtaaacaac gacaccatgc
       61 agtcagctgt tccaatcatt tttgcaggtg gcgacattgt tcgtggtggt gctacggtta
      121 tcctggccat gggtgatgga cgtaaagcag caaaatcgat ggacgaatgg ataaaatcta
      181 ataactaaaa agtaatttga tactatcaaa cagaatgcgc ttcctgactg agtcgggaag
      241 cgcatttttt atggcaggat tttaattact cgccactgga ataatccaat tgatatattt
      301 catcattttc ctgtaaataa atattcgcaa tatcatttgc agtaaatttg ccttcaaaac
      361 acagtatctg ttcatgaaac cctttagcta aaggaacaat atacgcacat gaataagcat
      421 cggaatcatt ttctgtatta taattgcgaa ccagcgtatt atttttcaat actgcaagaa
      481 tatgattcat ccttgtccat actaaatcac tagttccgtc attaattaaa tacatggtaa
      541 gaaaagtacg gtctccagct tcattattgc tcagcttcga tggataaatc cccaccgtgt
      601 aattgactga tttggaagga ttggaaataa cttccaaata aacagggtca cttgccttta
      661 cggtatttaa aattgcaaaa gcagacagaa gcaggataac gatttttgtt ttcatataaa
      721 taggtattta tgatttccgg taataatcta ataaaatcac atatacaaaa aatgcgccat
      781 ttgtatacca gaacagcgca ttttcaaaac aaataagtta catgctaagc acctaaagcc
      841 cgtaatgctt caaatacaag aatagccggc catacaaggg ctttcagaaa accgagcact
      901 cccacccaaa aagtagttgc ttttgcaata aaataaatag ctgctccgat cattcccaaa
      961 ccatagacag ctccacctga agctgttgct ggatgattat ggtttctgtt tttgcaatcg
     1021 taattttgtt cttcgttcat aagggttgaa ttttaccaat gattactgta tagttttttc
     1081 cgtatttctt ggcacatttg gggcaggttg tataccacat ataccatttt tcaattttta
     1141 gatttttctc ttttgctttt gtttcgaagt cggtacacca ttttccggtc tgattgaagt
     1201 ctccttcgta aacacgactg taaaaagtac cgcttagttt tacattttcc gttccgggta
     1261 tttccttgtc aactgccaga tacaaatcca tattccattt ggaagtatga tcggacaggc
     1321 acagccaatc tggaatttca gcacctgcct tttctacacg cttatttaag cgtttcatag
     1381 ctccaccaaa gttcagagga atgtaaaagc aggtaaacac tttatcctta ataaaaagtt
     1441 tgttgtccca cctatgcatc ttatcatccc agggcagtgg gtcaaaaggt gggcaacatt
     1501 cgaaatcttt agtttcagcg ctcatgattc ctaaagttta aggttaataa tgaacagata
     1561 gtcgttgcaa atgtaattat ttttttcata aagatacagt ataaaaacaa ttttcatcat
     1621 tccataaaaa acaaataggg ttgcaaaaca tattgcaacc ctattctata tcttttacaa
     1681 cttcaattat ttatacattc gctcgcgaat tgcttttaca tcctccgaag ttacataatc
     1741 atcataatcc atttgtttgt caatgatacc tttaggcgtc aattcaataa tacgattaca
     1801 tacagtctga ataaattcac ggtcatgcga agccattaaa acgtttcctt taaagttcac
     1861 caacgtatta ttgaatgcct ggatcgactc caaatccagg tgattggcag gcgagtcaag
     1921 caccattaca ttcgcgtttt taagcatcat gcgcgaaatc atacaacgca ttttttctcc
     1981 tccggaaagt acgctggctt ttttataaat ctcttcaccc gcgaaaagca ttttgcccag
     2041 ataaccacgg ataaacgatt ccgttgtgtc gcttgagaat tgtccgagcc agtcaaccag
     2101 attcaaatcc gtattgaaaa attccgaatt atcaagcggc aaataagcat gcgtaatcgt
     2161 tattccccag ttaaatgtac cttcgtgatt cttatcgtga tcattgatta tttcaaagaa
     2221 agcagtcatg gcgcgtggat cacgagccag aaaaacaatc ttatcattct tctcaacgtt
     2281 gaaatttaca tctttgaaaa gtacagttcc atcttccagt gtctttccaa gtccggcaat
     2341 ttccaacacc atgtttccgg gttcacgttc cggagtgaag ataattcccg gatatttacg
     2401 tgtagaaggc tggatttcgt cgatattaag tttttcgagc attttcttac ggctggttgc
     2461 ttgttttgat ttagcaacgt tggcactaaa gcggcgaata aactcttcca gttctttctt
     2521 tttctcttca gccttcttat tctggttttg ctgttggcga agcgccaatt ggcttgattc
     2581 gtaccaaaaa ctataattcc cggcgaatgc ctgaacttta ccaaaatcaa tatcaacagt
     2641 atgcgtactt acagcatcga ggaagtgacg gtcgtgagat acaaccaaca cagtattttc
     2701 ataattagcc agatagtttt ccagccacat tactgtttcc acgtccaggt cattggtagg
     2761 ctcatcgagc aacaggttgt ccggttttcc aaaaagcgca cgtgccaaca aaacacgtac
     2821 tttttccata ccgctcaact ctttcatgag ctggtaatgc aaatcttctt taattccaag
     2881 tccgctcaac aatgaagcag cttcactttc ggcattccaa ccattcattt ccgaaaattt
     2941 atcttccaat tccgaagcac gaagtccatc ggcatccgaa aaatcttctt tcagataaat
     3001 tgcatctttc tcttccttta cctgccaaag cacagtatga cccatcatta cagtatctaa
     3061 cactgtaaat tcatcgaatt cgaagtgatc ctgcttcaat acagataacc gttcgcccgg
     3121 accaaactga atagttccgc gggttggatc caaatcgccg ctaagcatac gaatgagagt
     3181 tgactttccg gcaccatttg caccgataac gccataacag ttgcctgctg taaatttcag
     3241 gtttacatcg gaaaataaaa cacgtttgcc aaattgaatg gccagattag aaacagtaat
     3301 cattttgttg attgaagata aagtaaatta tatattaggc tgattctcat cagccgggta
     3361 aaataatcag gtagtattct aaaacaaaga atagaaccaa tctgttttcg agatttgttc
     3421 tattcttcta tatcctgaac ttatgtttat tttaaagcca attattcaat aattcccaat
     3481 gtacgggcag ctttagatat tttttcaatt gactcgtcaa tttggtcgaa agtatgtgta
     3541 gccatcaacg aataacgtat cagggagtct tccgaacgca cagccggaga aacaaccgga
     3601 ttaacaaaaa cgccatcatc catcaatgtt tttgtaagca ggaaggtctt tgtattatca
     3661 cgtacataca aaggaataat cggagtttcg gtgtgtccaa tttcaaaacc tgctttcagg
     3721 aatcctgctt tcgcacggtt cgtatttgcc cacagcgcat ctttacgcca cgtttcttct
     3781 tccatcacat ccaaggctgc caacacacaa cctgttgaag ctggagtaat cgaagcgctg
     3841 aaaatcaatg tgcgggaatt atgtttcaaa taatttataa tgttattgtc ggcagcaatg
     3901 aaaccaccaa tggtaccaag cgatttgctg aaagtaccca tgatcaaatc aacatcattt
     3961 gaaactccga aatgctcaca aataccggct cctgttttac cgaatacacc taacgagtgg
     4021 gcttcgtcaa cataaataga ggcgttgtat tttttagaaa gctctactat ttcaggtaat
     4081 tttgctacat ctccttccat actgaaaact ccatcaataa cgataagttt caatctttcc
     4141 ggttcacatt ttttgagtaa tttttctaaa gcatccatat cgttgtggcg atatttcagt
     4201 tgtttggaga atgaaagacg ttttccttca ataatagaag catggtcgaa ttcatcaaaa
     4261 atcaggtaat cttcacgacc ggtaacacat ggcacaacac ctgaatttac ggtaaaacct
     4321 gtagcataaa ccaatgctcc ttctttgtga accagtttag ccaaacgctc ctctaattca
     4381 aggtgaatat ccaacgttcc gttcaggaaa cgtgatccgg cacaaccggt tccgtatttt
     4441 tctattgctt taatcgaagc ttctttcaat cgggggtgat tggtaagtcc caaatagcta
     4501 ttagaaccaa acatcaatac tcgtttacca tcgattgtaa caactgtatc ctgatcagat
     4561 tcaataggtc ggaagtatgg gtaaacgccc attgcttttg cttgctgggg cgcatcatat
     4621 tgtcccaaca cattacttag ttgactcata aatttatgtg tttgtaaata aaacggctgc
     4681 aaagatacaa aaattttcct gcaaacaagc ataaattttg attggtacgg gataattgaa
     4741 tacttttgca acccgaaatt caacaacaaa cctgtagcgt gagtaaacaa ctggattata
     4801 aactattgcc cgttttagcg gccaaagcgg cgccggagtg gaagcacttc ctggctaaaa
     4861 acaaaaagaa actggaagga atggacttac aggttcatgc cttgcatgat aaaatttccg
     4921 aacgcaccga ctgcctgcaa tgtgccaact gctgccggtc gttaggcccg cgcattaccg
     4981 ataaagatgt ggaacgaatg gccaaagcgc ttcggttgaa agctgccgat gtaatttcaa
     5041 aatacctgag gattgatgaa gacggcgaca tggttttcca atcgatgccc tgccctttcc
     5101 tgggcgacga taactactgc gccatttacg aaaaccgccc caaagcctgc cgcgaatatc
     5161 cgcacaccga ccgcaaacgg ttttaccaga tttataacct gtcgataaag aatgcttata
     5221 cctgccccat tgtgtatgaa gtgctggagg aattgaggaa atagttggga gttttgggtt
     5281 ctgaattatt tgagaaaaag tattgacaaa aaaaacaaac attcataatc caaaaataat
     5341 tggggagtcg gagataaatc tgacgtgagt cggaaaactg cgcacaattc caaccaaaac
     5401 tctataacct aaaaatgctt ttcttgagca caccagattt ctcaaacgaa aaatgcactg
     5461 taaacaaaat gctcagggcg atacttagca ccgtggaagc
//
LOCUS       DATDNM010000132         2156 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1084715, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000132 DATDNM010000000
VERSION     DATDNM010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1084715"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..177)
                     /locus_tag="VI413_02270"
     CDS             complement(<1..177)
                     /locus_tag="VI413_02270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018666258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase N-terminal domain-containing
                     protein"
                     /protein_id="HEY6913474.1"
                     /translation="MTKSRILLLLAICSLASLSAQSNDCKLWYDKPAQVWTEALPLGN
                     GRLGAMVFGNPASEQ"
     gene            complement(338..>2156)
                     /locus_tag="VI413_02275"
     CDS             complement(338..>2156)
                     /locus_tag="VI413_02275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008761658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3826 domain-containing protein"
                     /protein_id="HEY6913475.1"
                     /translation="GKVVPFADFRIRPYSVEESLTNVLSLFDYKFAKQDEKTYKIKAY
                     EYPRRTPEDGKKMLAYLNTLYKDSAEWNARKACLKKEVREKLQIDSAFAKRIHSKPIL
                     SKIRNYDGYSVQNFAIETLPGLYVCGSIYNPLSKGKHALILCPNGHWADGRYNADEQH
                     RFGTLARMGATCVSYDLFGWGESELQVTYTAHRTSVAHIIQIMNGLTILDYMLTRKDI
                     DPKRVAANGGSGGGSQVVLLSALDNRFTAACPTVSLASHFDGGCPCESGMPISLSCGG
                     TNNAELMATFAPKPVCVISDGKDWTASVPELEYPYLQRIYGFFNATQHVSNVHIPTEG
                     HDFGINKRKAVYDFFISTFGLDRSKLDETKVTIEPKEAMYSFGSKGEKMPTNAIREFA
                     QVEKFFNKKADAKIHSDIDLEKRAKTFVDSLKLNDKEKEVRVFNVIKTHMKAVRDWHN
                     DHPYTIIPKGINPRTGELMTDVHRDVVACSTKPKSVHENLMTGLRKDLTEEQVEKVLD
                     LYTIGKYQFTLKGFKAIVPNMTEKEEAYVVSQLRQAREEAVDYKTMKGEISAVFEIYK
                     DKCEKYFNENGRSWKLMYKEFTNKLKAEKEAKKKAEEGK"
BASE COUNT          536 a          483 c          460 g          677 t
ORIGIN      
        1 ttgttccgat gccggatttc caaaaaccat ggcacccaac cgtccgttac ccaatggcaa
       61 tgcttccgtc caaacctgag cgggtttgtc gtaccatagt ttgcagtcgt tggattgtgc
      121 tgacagagag gctaaactgc aaattgcgag tagaagcagt attcgtgatt tagtcattaa
      181 atatctcatt tttcagttgt gtttttactt ttcaaaagta atataaatga cgtgaaaaaa
      241 tgggttttgt acccaaaacg aattggtcat atgtaaaata aaaatggcag tatgaagtta
      301 attcataccg ccttttctat cttcccgaaa agggaaacta ttttccctct tccgctttct
      361 ttttcgcttc tttctccgct ttcagtttgt tggtgaattc tttgtacatc aacttccaac
      421 tgcgaccatt ttcgttgaag tatttttcgc atttgtcttt gtagatttca aatacggcag
      481 atatttcacc tttcattgtt ttataatcta ccgcctcctc gcgagcctgt cgtaactggc
      541 tcacaacgta cgcttcttct ttttcagtca tatttggaac aatggctttg aatcctttta
      601 gcgtaaactg gtatttgcca atggtgtaca gatccaatac tttttccact tgttcttctg
      661 tcaggtcttt gcgaagcccg gtcatcaggt tttcatgaac cgattttggt ttggtggagc
      721 aggcaactac atcacgatga acatcagtca tcagttctcc tgttctggga ttgataccct
      781 ttggaatgat ggtatacgga tggtcattgt gccagtcgcg cacagctttc atgtgtgttt
      841 tgataacatt gaatacccgg acttcttttt ctttgtcgtt tagtttgagc gaatcgacaa
      901 atgttttagc gcgtttttcc aaatctatgt ccgagtgaat tttggcatct gcttttttgt
      961 tgaagaattt ttccacttgt gcaaactcgc gaatggcatt ggtgggcatt ttttcgcctt
     1021 tggaaccaaa actatacatt gcttctttcg gctcaatagt tacttttgtt tcgtccagtt
     1081 tacttcgatc gaggccaaat gttgaaataa agaaatcgta cacggcttta cgtttgttga
     1141 taccaaaatc atgtccttcg gttgggatat gaacattcga aacatgttga gtggcattga
     1201 aaaatccata aattcgttgc aaatacggat attccaactc aggaacagaa gctgtccagt
     1261 cttttccgtc ggaaataacg caaaccggtt ttggtgcaaa ggtagccatc agttcagcat
     1321 tgtttgttcc gccacatgac aacgaaatag gcataccgct ttcgcacggg caaccgccgt
     1381 cgaagtgcga tgccagacta actgtaggac acgcagccgt aaaacgatta tccaaagccg
     1441 aaagcaacac tacctgcgaa ccaccgcccg aaccaccgtt agcagccaca cgtttagggt
     1501 caatatcttt gcgggtaagc atataatcga ggatggtcaa tccgttcata atttgaataa
     1561 tatgcgccac cgaagtgcga tgagccgtgt aggtaacctg caattccgat tcgccccacc
     1621 caaaaaggtc atagctcacg caagtagcac ccatgcgagc cagtgttcca aaacgatgtt
     1681 gttcatcggc attgtaacgt ccgtcggccc agtgtccgtt cggacaaaga atcagcgcat
     1741 gttttccttt gctcaacggg ttgtaaatcg atccgcaaac atacaaaccc ggtaatgttt
     1801 cgatggcgaa attctgcacg gaataaccgt cgtagttgcg tatttttgag aggatgggtt
     1861 ttgagtggat ccgcttggca aatgccgaat caatctgcag tttctcccgg acttcttttt
     1921 tcaggcaagc tttgcgggca ttccattcgg ctgaatcttt gtagagcgtg ttcaggtaag
     1981 ccagcatttt ctttccatct tccggtgtgc ggcgtgggta ttcataggct tttatcttgt
     2041 aggttttttc gtcctgcttt gcaaacttgt aatcgaaaag cgacagcaca ttggttagcg
     2101 attcttccac cgagtacggg cgtatacgga aatcggcaaa cggaacaact tttccg
//
LOCUS       DATDNM010000133         2446 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_871167, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000133 DATDNM010000000
VERSION     DATDNM010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_871167"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..686
                     /locus_tag="VI413_02280"
     CDS             <1..686
                     /locus_tag="VI413_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEY6913476.1"
                     /translation="KAPSLKVAEASKIIENAQRDVNISFVNELALIFDKVGIDTNDVL
                     EAAGTKWNFLKYSPGLVGGHCISVDPYYLASKAESLGYVPQVILSGRHVNNSIAPFIA
                     NKVLKLMIHKTHTIKGSNVLILGVTFKENCPDIRNTKVVDIYRELCDFGLEVDIYDPW
                     ASADEVKHEYDVDIITKLDHSKEYQAVLLTVSHDEFKTIDFEKYYRAGAVIFDAKAVV
                     DRRWVDGRL"
     gene            769..>2446
                     /locus_tag="VI413_02285"
     CDS             769..>2446
                     /locus_tag="VI413_02285"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEY6913477.1"
                     /translation="MNKFRLILLSFFVVTGLMAQDLSKLTPEQMEMYKKYMAGKNSTA
                     TTVSTATTPKDNVTARRFDENDSTKIMPDSLVEKASKLSVFGSYLFNKQNLTFEPKLN
                     IPTPPKYVLGTYDELVIDISGLYEANYKLKVSPEGLVRIPNVGPVKVAGIMIEDASRL
                     IKNQVSKVYMGVSSGETRVNVTLGSIRSIRVTIVGEATRPGTYTLPSLATAFNALYAC
                     GGPNDIGSMRDIKVIRGGKVIAKLDVYQFLVDGLMANNTALQDEDIIRIDPYKIRVAL
                     NGAVKHPAIFQGQQGETLQSLIRFAGGFADNANKSKITVFRLTEKGRTVIDVQDNNIS
                     SFVLKSGDSCNVTKTYNKFDNRVDIKGSIYRPGAYAIEPGLTVKQLVAKADGIKEDAY
                     LNMAYISRKKENQIPQIIGFNLGDVLSGKAEDILLQKDDSVVIQSLFEYREGQKVTIL
                     GAVKAPGTFPLIENITLKDLIFKAKGFTEMASTDSVELVRVVKDQQTLLTTNQKSTVQ
                     KFALDKDMNFVNGSGDILLENGDQVIVRSISGFEGIRMVRVEGEVIHPGSY"
BASE COUNT          801 a          375 c          514 g          756 t
ORIGIN      
        1 ataaagctcc cagtcttaaa gtagcagaag cctccaagat tattgaaaat gcacaacgtg
       61 atgtaaatat ttcttttgta aatgaattag ctttaatttt tgataaagtc ggtatcgata
      121 cgaatgatgt gttagaagct gccggtacaa aatggaactt tctgaaatat agtccgggct
      181 tggttggagg tcattgcatt agcgtggatc catattatct ggccagcaaa gcagaatcat
      241 taggatatgt gccacaggtg attctttcag gtagacatgt taataacagc attgcccctt
      301 ttattgccaa taaggtgttg aaactgatga tacacaaaac ccacacaatt aaaggttcaa
      361 atgtccttat tctgggagtt acttttaagg aaaattgtcc ggatatccgt aatacaaaag
      421 tggttgatat ttatcgtgaa ttatgtgatt tcggcttaga agtggatatc tatgatcctt
      481 gggcttctgc ggatgaagta aaacatgaat atgatgttga tattataact aaacttgatc
      541 attcaaaaga atatcaggct gttctattga ccgtatcaca tgatgaattt aaaacaattg
      601 atttcgaaaa atattatcgt gcgggtgctg ttattttcga tgcgaaagca gttgttgaca
      661 gacggtgggt tgatggaagg ctatgattta gtttgtaata agtgatttat aatatatagt
      721 ttataatata tagtttataa taagtagttt gatcttaagt aaatacgtat gaataaattt
      781 agattaattt tactttcatt ttttgtagtt acaggtttga tggctcagga tttgagcaaa
      841 ctaactccgg agcaaatgga aatgtataaa aaatacatgg ccgggaaaaa ttcaactgca
      901 actactgtct ctacggctac tacacccaaa gataatgtaa ctgcccgtag atttgacgaa
      961 aatgactcaa cgaaaataat gccggattca ttagtggaaa aagcatctaa actctcagtt
     1021 tttgggtctt atttgtttaa caaacaaaac cttacttttg aaccgaaact aaatatccct
     1081 actcccccaa aatatgtttt aggtacttat gatgagttgg ttattgacat ttccggcttg
     1141 tacgaagcaa attacaaatt aaaagtctca cccgaaggtc ttgtccgcat tccgaatgtt
     1201 ggtcctgtaa aagtggcagg tataatgatt gaggatgctt ctcgattaat taaaaatcag
     1261 gtttccaaag tatatatggg tgtttcttcc ggggaaacaa gagtaaatgt aacgctggga
     1321 agtatcagga gtattcgcgt aacaattgtt ggagaagcaa cacgtcccgg aacttataca
     1381 ttaccatcgt tggcgacagc ctttaatgct ttgtatgctt gcggaggccc gaacgatatt
     1441 ggtagcatgc gtgatattaa agttattcga ggtggaaaag taattgcaaa attagatgtt
     1501 tatcaatttc tggttgatgg cttgatggcc aataacacag ctcttcagga cgaagatatt
     1561 atcagaatcg atccatataa aattcgtgta gcactcaatg gtgctgtaaa acatcctgcg
     1621 atttttcagg gacaacaagg tgaaacgtta caaagcctga ttcgttttgc cggaggtttt
     1681 gccgacaatg ccaataagtc aaaaataact gttttcagac taacagagaa gggaaggact
     1741 gtcattgatg tacaagataa caatatatca tcttttgtgt tgaaatcagg tgattcatgt
     1801 aatgttacaa aaacctataa taaatttgat aatcgtgttg atataaaagg ttccatttac
     1861 cgtcccggtg cttatgcgat tgagccgggt ttaactgtaa agcaacttgt tgccaaagca
     1921 gacggaatta aggaagatgc ctatttaaat atggcctata tcagtcgtaa aaaagagaat
     1981 cagattccgc aaatcatcgg attcaattta ggggatgtct tgagtggaaa agcagaagat
     2041 atcttattac aaaaagatga ttctgttgtt attcagagtt tatttgaata ccgggaaggg
     2101 caaaaagtta caatattggg cgctgtaaaa gcaccaggaa ctttcccgtt gattgaaaat
     2161 ataactctga aagatcttat ttttaaggca aaaggattta ccgaaatggc ttcaacagat
     2221 tctgttgaac ttgtacgggt tgttaaagat cagcaaactt tattgacgac taatcagaag
     2281 tctacagtac aaaaatttgc attagataaa gatatgaatt ttgtaaatgg atccggggat
     2341 attttgcttg aaaatggtga tcaggtcatt gttcgaagca tatccggttt cgaaggaatt
     2401 cgtatggtac gtgttgaagg agaagtaatt cacccgggaa gctata
//
LOCUS       DATDNM010000134         2477 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_871241, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000134 DATDNM010000000
VERSION     DATDNM010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2477
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_871241"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..760
                     /locus_tag="VI413_02290"
     CDS             <1..760
                     /locus_tag="VI413_02290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY6913478.1"
                     /translation="QLTAAAVEQSKALLYNTQLSVFDLESRMRQQENAICVLIGRAPG
                     AIERGSINDQIIPATMNGNVSVRTLANRPDVKQAELSLQSAYALTDAAKAAFYPSLSI
                     STLSVGFAAGGFSNFFSPASLAAEIIAGITQPIFSRGQLKGNLKITKAQQEEALLTFS
                     NTLLVAGQEVSDILYSYKSLVSKNEWRDKQVESLTKSVDYTQELLKAGEANYTEVLTA
                     QQNLLSAQLSKVNDKLDQLTQSVSLYKALGGGVK"
     gene            complement(962..2398)
                     /locus_tag="VI413_02295"
     CDS             complement(962..2398)
                     /locus_tag="VI413_02295"
                     /inference="COORDINATES: protein motif:HMM:NF017835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcvB/VirJ family lysyl-phosphatidylglycerol
                     hydrolase"
                     /protein_id="HEY6913479.1"
                     /translation="MEKKIYILLTGLLIFGLSAHASNVDTLSVGGFGKVNIYIPGNVP
                     GAIVLLVSGTEGWNKEMAGIAQNIKAQGALVAGVNLKYYLKQLNTSKAKCMYPAGDFE
                     SLSMDIQKKYKFKQYLPPILVGCSSGATFIYGVLAQSPPETFKGAISFGFSPEITTGN
                     PLCEGNGLKSVPTKNKGNYYLQPCSTLKDPFVVLQGALDKVRTNAAIQQYMTGLTNGE
                     LILLPGVGTNFTDSKGWLPRFCLAYNKILNKSVSLDKQTIQKIETPDAKPLSVNNDLP
                     LTIIPPKSNKKMPLLFFISGDGGWKKFEQRVGEIVSEKGMPVIGLDALKYFWNERQPK
                     EAADEISAVISYYMKQWDRSSFILVGYSFGAGVVPFIANNFPDQLKGKIKGVYCFSPD
                     KTSDFEIHISDMLSMNTKEKYNVLNELKIIIPFNPVCIFGSKEDAKLKKQFFIKGIRI
                     ESLPGEHHYNNDYNAIAGIMLKDFLNGY"
BASE COUNT          712 a          548 c          484 g          733 t
ORIGIN      
        1 tcaactcact gcagcggctg tagaacaaag caaagcattg ctttacaata ctcaactctc
       61 ggtttttgat ctggagagca gaatgcgcca acaggagaat gccatttgcg tacttatcgg
      121 ccgtgcaccc ggagctatcg agcgcggatc tatcaacgat cagataatac cggccaccat
      181 gaacggtaat gtgtctgtac gtacgctggc caatcgtccg gacgtaaaac aggctgaact
      241 ttcgttacaa tcggcttatg cccttactga tgctgctaaa gcggcttttt atccttcgct
      301 tagcatcagc acgctctcgg tgggatttgc cgccggtggg ttttccaatt ttttcagtcc
      361 ggcaagttta gccgccgaaa taatagccgg aattactcag cctatctttt cgagaggaca
      421 gttgaaaggc aatctgaaaa ttacaaaagc ccaacaagag gaggcattgc tcacgttctc
      481 gaataccctg ttggtagccg gacaagaagt gtcggatatt ttgtatagct acaaatcgtt
      541 ggtcagtaaa aacgagtgga gagataaaca agtagagtcg ctcaccaaat cggtggacta
      601 cacgcaggag ttactcaaag ccggcgaagc caactatacc gaagtgctta cagcacaaca
      661 aaacctgctt tcggcacaac tcagcaaggt aaatgacaaa ctcgaccagc taactcagag
      721 tgtgagtctt tacaaagctc ttggaggtgg cgttaaatag gcagctatcc ttttattagt
      781 ttatattatg aatcagccca acttaatgca gcattaagtt gggctgtttc tatttaaaat
      841 gtaatcgcta ttttttttga aagcatttcg ttattgacag aatgccctcc ttcaaactct
      901 ttagaaccta gcccaatggc aacatcctga actgaaaagc aattggaaca atttaaaaag
      961 gctaataacc attaagaaaa tccttaagca taattccggc tatggcattg tagtcgttat
     1021 tgtagtgatg ttcaccgggc agactttcaa ttcttattcc ttttataaag aattgttttt
     1081 ttaatttagc atcctcctta cttccgaaga tacaaacggg attaaaaggg ataattattt
     1141 ttaattcatt tagcacattg tatttttcct ttgtattcat agacaacatg tcggagatat
     1201 gaatttcaaa atcactcgtt ttatctggcg aaaagcaata cacgcctttg attttccctt
     1261 tgagctggtc tggaaaatta ttggctataa aaggtacaac tcccgctccg aatgaatatc
     1321 ccacaagaat gaacgaacta cggtcccact gtttcatata ataagaaatc acggccgaaa
     1381 tctcatccgc ggcctctttg ggttgccttt cgttccaaaa gtatttaagg gcatcgagcc
     1441 cgataacggg cattcctttt tccgaaacaa tttctccaac cctttgctca aactttttcc
     1501 agcccccatc tccggaaatg aagaatagca gcggcatttt tttgtttgat ttcggtggaa
     1561 taatggtcag tggcaaatcg ttattcacag aaagcggctt cgcatccggt gtttctattt
     1621 tttgtattgt ttgtttgtct agcgaaacag atttattcag gattttattg taagcaagac
     1681 aaaaccgggg cagccaacct ttagaatccg taaaattagt tccaacaccg ggcaataaaa
     1741 tcaattctcc gttggttaaa cctgtcatgt attgttgtat agcggcatta gtccgtacct
     1801 tatccaacgc cccctgaagc actacgaacg ggtctttcag ggtgctgcag ggttgcaggt
     1861 aataatttcc cttattcttt gtcggaacgg acttcaggcc attcccttca caaagtggat
     1921 tgccggtggt tatttcggga ctaaaaccga aacttattgc ccctttgaac gtttcgggag
     1981 gtgattgagc caatacgcca taaataaagg ttgctcccga tgaacaacct accaatatgg
     2041 gtggaagata ttgtttgaat ttatattttt tttgaatatc catgctcagt gattcgaagt
     2101 cgccagcggg atacatacac tttgctttag aagtattcag ttgttttaaa taatacttta
     2161 aatttacccc tgctaccaaa gcaccttgcg ctttaatgtt ctgcgctatc ccagccattt
     2221 ctttgttcca gccttcagta cccgaaacca gaagtacaat tgcaccgggc acattccccg
     2281 gaatgtagat attgactttt ccaaaacctc caactgataa agtatcaaca ttggaggcat
     2341 gtgcgcttaa cccaaaaatc aacagtccgg tcaataatat ataaattttc ttttccatat
     2401 gcttttacac tttaattact ttagacaaaa cagccggcgc tttcaacaaa tcatagtcat
     2461 tctgataaat cagatat
//
LOCUS       DATDNM010000135         3405 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_445097, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000135 DATDNM010000000
VERSION     DATDNM010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3405
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445097"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            33..713
                     /locus_tag="VI413_02300"
     CDS             33..713
                     /locus_tag="VI413_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009017160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1990397 - queuosine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="queuosine precursor transporter"
                     /protein_id="HEY6913480.1"
                     /translation="MKKQVSVAFMMCGLLFTVCLIVSNIVEQKLITIFGIECTAGLLI
                     FPISYIINDLIAEVWGYRKVRLIIWNGFLMNFLAVLVFRISIWAPGSEHFTNQSAFAS
                     VLGNTERIVVASFIAFLFGSFLNAYVMSKMKILQHGRGFSIRAVVSTIVGEGADSLVF
                     FTIAFSGIIPQRALLMLILTQTALKTGYEIIALPLTNVVVKWVKKREQTDVYDRGISY
                     NPLKVKEI"
     gene            1141..1620
                     /locus_tag="VI413_02305"
     CDS             1141..1620
                     /locus_tag="VI413_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913481.1"
                     /translation="MANLISATFTEENEKKAMELLAQLKELFPFGIKLSAIERKRLAG
                     LDDARIPFADKGLFYGGQQPLVVPPFIDLAEYKKDLEFVKATSRVGAELMSFAEMVND
                     TRVAAGSDAYQAALSIYSSSKAAAKQGVPGTQTIVDEMGKLFDGQRNNAKSGEATAK"
     gene            2394..3059
                     /locus_tag="VI413_02310"
     CDS             2394..3059
                     /locus_tag="VI413_02310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913482.1"
                     /translation="MTPLQKKQIETLMDKMLLEYDFEIIPVKLEVFSIEKQCYSNVEK
                     KVKQDGGKIHYGWSVHFNKGIIVEAERHAVWENDNEDLICVTPHPSGNKEVIFLSYNI
                     PVDPKLQIDNIRMNITNNPLVDDWIYLADIVGHIFYKYTDRIDDERVSIDTSVSIAIK
                     QIEEWRDLVMGLIKLGKKEKSSCYCESGFYNSRKYLDCHSKIFKNEIPILLDNIKEYA
                     KRE"
     gene            3177..>3405
                     /locus_tag="VI413_02315"
     CDS             3177..>3405
                     /locus_tag="VI413_02315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913483.1"
                     /translation="MTYKIRTHNPIISLFILVVVFIIASRFIHDKFGSGIEFFLFVIL
                     YLASEITNYYLFNNKTIVTVTEKGINANWMQS"
BASE COUNT         1091 a          569 c          716 g         1029 t
ORIGIN      
        1 tgtgcttgaa taccacgtaa aaaacaagag taatgaaaaa acaagtttcc gtcgcattta
       61 tgatgtgtgg gctgctattt acagtatgcc tcatcgtttc caacattgtt gagcaaaaat
      121 taatcaccat tttcggcatt gaatgtactg ccggtttgct cattttcccg atatcttata
      181 ttatcaacga cctgattgcc gaagtgtggg gctatcgaaa agtgcgcctg atcatctgga
      241 atggtttcct gatgaatttc ctggctgtgc tggtgttccg gatcagcatt tgggcaccgg
      301 ggtcggagca ttttaccaac cagtcggctt ttgcttccgt gttgggcaat accgagcgca
      361 ttgtggtagc cagtttcata gcgtttctgt tcgggtcgtt cctgaacgcg tatgtgatga
      421 gtaaaatgaa aatcctgcag cacggccgcg ggttttccat ccgtgcggtg gtttctacta
      481 ttgtgggcga aggggccgat tcgctggtgt ttttcaccat tgccttctcg ggtattattc
      541 ctcagcgggc cttgttgatg cttattctta cccagactgc tctgaaaaca ggttacgaaa
      601 tcattgccct accactcacc aacgtagtgg taaaatgggt taagaaacgt gaacaaaccg
      661 atgtgtacga ccggggcatt tcgtataatc cgcttaaagt taaagagatt taaagaaata
      721 tagacttgtt caggtctaca aaaagctgct tcaatcatgg ttttgaggca gctttttgtg
      781 tttttgtaac ccattgtacc actgcaaaag aatgtctctg cttttattta caaagaaata
      841 gttcggtgct ctgcaccttc atttaaggtg cagagcaccg gactatttgt agagaaattt
      901 caggaatgtg caattgaagg tgcagcgcac cgaaccatcc aaccagaata ctgtagaaat
      961 ttgtttatgt cgtattcgcg ttaatctagc cggggatgtt aacagtatgt taacgttaaa
     1021 taataaactt taattgctag ctatcgatcc tatgttaatt gtatatttgt gaaaattatt
     1081 tatttgtaac agaataaaac attttatttc ataattataa actttaaaaa cgaagtatct
     1141 atggcaaatc tcatttcagc cactttcaca gaagaaaatg aaaagaaagc aatggagtta
     1201 ttggcacaac tcaaagaact gttccctttt ggcattaaac tgtcggccat cgagcgtaag
     1261 cgccttgccg ggttagacga tgcgcgcatc ccttttgccg acaaaggatt gttttatgga
     1321 gggcaacagc cgttggtagt accaccgttt atcgatttgg cggaatacaa aaaagacctt
     1381 gagtttgtga aagctaccag cagggtaggt gccgaactaa tgagttttgc ggaaatggtg
     1441 aacgacaccc gcgttgctgc cggtagcgac gcttatcagg cagcactttc tatctacagt
     1501 tcttccaaag ccgctgccaa acaaggcgta ccgggcaccc aaaccattgt ggacgaaatg
     1561 ggaaaactgt ttgatggaca acgcaacaat gcgaaatcgg gcgaggctac tgccaagtga
     1621 ggcaaggcta acccggaagt aagcaagcca ggtaaaaagg taggcttgct tacctccgga
     1681 gtaggcaagg ctggttctga agtaagcaag ctcggttata accaggcttg cttatgtttt
     1741 agttaggcaa gcctactttt ttacgaggct tgcttacctt ttatgtaagc aggcctgaat
     1801 tcgaataagc tttgcttcgg ttttttaaaa gttcaatcct aaaccgatcg agataaaaga
     1861 caaatggttt taaactcggg gtagattgtt attcaaaccc aattaattac atttgtgaac
     1921 aatttggtga gcggggtagc gaaaatttga gtatctggtg ctcagatttt aatgttaggg
     1981 cattttagaa aaaagaaaat cgacatgatt actatacaga aaatcgacat atacaacaag
     2041 tatcttggtg actcagacgg ttttgttaga tgcgggacta agtatgagaa aaaattattt
     2101 cttccgagtg actgggcgtt aattgaaacg accttacaag acttagagtt aatatataaa
     2161 ggtctatgtt cgcaggaata taaagaaaaa acatacatac gacttaaaga aaattttgaa
     2221 ccagcaacaa tcacactctt gacaaataaa caatgatttt tagttttaca cgctgtgcag
     2281 atttgtaact tcggtaaacc agatatgtca tctttcaaat gaataaattt ggcagaatgg
     2341 atatctggat aacaaatcat aatgaaattc cgaagcttta atctatttat tttatgacgc
     2401 ctttacaaaa aaaacaaatt gaaactttaa tggacaaaat gctgttggaa tatgatttcg
     2461 aaattattcc tgttaagcta gaagtatttt caatcgagaa acaatgttat tctaatgtag
     2521 aaaagaaagt aaaacaagat ggagggaaaa tacattatgg ttggtcagtc catttcaata
     2581 aaggaattat tgttgaagct gaacgacatg cggtttggga aaatgataat gaagatttaa
     2641 tttgtgttac gcctcatcca agcggcaata aggaagtcat atttttgtca tataacatac
     2701 cggttgatcc aaaattacaa attgacaata taagaatgaa tattactaac aatccattgg
     2761 tcgatgattg gatttattta gcagatattg ttggacatat attttataaa tacactgata
     2821 ggattgatga cgaacgtgta agtattgata cgtcagtttc tatagctatt aagcaaattg
     2881 aagagtggcg agatttggtg atgggtttaa ttaagcttgg caaaaaagag aaaagtagtt
     2941 gttattgtga aagcggcttt tataatagta gaaaatactt agactgtcac agtaagattt
     3001 ttaaaaatga aatacctatt ttgcttgata atattaaaga atacgcaaaa agagaataac
     3061 tctgttgagc ataggtacaa tcgtgcggca gcgtgggttc gactttagga tgaatgaaaa
     3121 atcagtaaaa tttgaaaact atttacaatt tcagaatatc aactaacaag acaattatga
     3181 catataaaat aagaacacat aatccgataa tttcattatt catcttagtg gttgtcttta
     3241 ttatagcatc aaggtttata cacgacaaat ttggaagtgg aattgagttt tttttgtttg
     3301 taattttata tttagcaagt gagataacaa actattattt atttaataac aaaacgattg
     3361 taactgtaac tgaaaaagga attaatgcga attggatgca atctc
//
LOCUS       DATDNM010000136         4626 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_124863, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000136 DATDNM010000000
VERSION     DATDNM010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4626
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124863"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..1308)
                     /locus_tag="VI413_02320"
     CDS             complement(103..1308)
                     /locus_tag="VI413_02320"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HEY6913484.1"
                     /translation="MKRVLLFALSLLLFADLHAASKPKPITSIPFEMVGSYVVIRVRI
                     NDSSPLNLILDSGIRNTIITELLEGDQISLNYSDVKDLMGLGGGMHLEAYSSNYNRLK
                     IGKIRMEPKTVFVLKEDIFNLSKHTGTKINGLIGVDIFHDYIVEVNYSNKRVCFYNRN
                     TFFAPKGYDMLPLSIEAQKMFVDLSVLEADSARRNVKMLIDTGAELNAWFQTFKTESV
                     HIPQNYIRGTIGQGLNGEIKGKIGRIPQICFGAHCLLNPVVSFPDSSSIADIVGNSER
                     DGTIGSQLLSRFNYIIDYGQKAFYFKPNGNFSNKFNYNIAGIEVTQMLPFLPQTEVWM
                     VWEESPAAKAGVLVGDQVLEINGKKSFELNINEIKHIFQTPSKFPLKIMLFRDNKEIS
                     LEIDMNSKI"
     gene            1685..4009
                     /locus_tag="VI413_02325"
     CDS             1685..4009
                     /locus_tag="VI413_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006800985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6913485.1"
                     /translation="MALNKTFLPAIIIFIFSFGISAQNKFTINGTVTDSGTGETLIGA
                     NISIKELPGKGAVTNHYGYYSLTLPKGKLTVIVGYLGYKNYEQQLDLIENKQINIKLE
                     TDSKALDGVEVYGKQKNHNITSTEIGMEKLEVKETLKIPVLFGEADIMKTLKLTPGIK
                     SIGEGSGGMYVRGGTNSQNLILLDEATVYNADHLLGFFSTFNSDAIKDIEMYKGTAPA
                     EYGGRISSVLDVKMNEGNNQTYHMGGGIGLISSRLNVEGPIIKNKGSFLITARRTYAD
                     LFLKLSKDTLINNNQLYFYDLNAKANYSIDDKNRVYFSGYMGRDIFKFSNRFGINWGN
                     VTGTLRWNHIWNEKLFSNTSLIYSDYDYKVAISGSRSFSLTSIIKDWNLKHNFEYFIN
                     SENTLSFGLNSIYHTLTPGQLETSDSLLSALHLQNKFALENALFISDAWKPTSKLSIN
                     AGLRFTSFNLVGPGDFYSYANGQVSDTTHFASGKIVKPVYFNLEPRLNVAYILNESNS
                     MKVSYARFAQNLHQVSNSTSSTPTDIWIASSNNVKPEIGDQVSLGYFGNFKNNQYQFS
                     AEVYYKRMQNQVDLKNGADIRANEHIEGELLFGQGRAYGLELMLKKKFGKLTGWTGYT
                     FSRTERKIDGINNGNWYPARQDITHDFSIVGIYDINKKWTVSATWVFNTGNAVTFPSG
                     KYLIDGKVQFYYTERNGYRMPDYHRLDVGATYTLKKTKKFESSLNFSVYNAYGHKNAY
                     SIDFEQDENDPTKINAVMTYLFTYVPSITYNFKF"
     gene            4014..>4626
                     /locus_tag="VI413_02330"
     CDS             4014..>4626
                     /locus_tag="VI413_02330"
                     /inference="COORDINATES: protein motif:HMM:NF025420.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4249 family protein"
                     /protein_id="HEY6913486.1"
                     /translation="MKFNILHIFLLALLFSACTEDIKLDLNSSNPQVVIEGSVPVDGK
                     ARISITKSINFDTKNSFPTVSNAIVTLTDNIGNSEILTENAAGIYTSNSMVGIVGRTY
                     SLSIKTDDKTITSSCKIPDPVRFDSLVVKVAENFRSGPFGGNEAGTLYTVTAMYKDPG
                     SVANYYRFIEYINGKSTGNIYVYEDRFTNGKSAERNLLNFNRYL"
BASE COUNT         1518 a          872 c          868 g         1368 t
ORIGIN      
        1 tttttccgaa actgcaaact gttgataact ttttcttgct aaaatattaa aatttcattt
       61 tttatattcc tcttttatca attcacaatt gcattcagcg ttttaaatct tgctattcat
      121 gtctatttca agggatattt ctttattatc tctgaacaac attattttca atggaaattt
      181 agatggtgtc tgaaagatat gcttaatttc gttgatgttt aattcaaatg atttttttcc
      241 gttaatctcc aaaacctggt cgcccacaag tacaccggct ttggcagccg gcgattcttc
      301 ccaaaccatc catacttcgg tctgaggcaa aaagggaagc atctgggtta cttctatccc
      361 ggcaatatta taattgaatt tattactgaa atttccattg ggtttaaagt aaaatgcttt
      421 ttgcccataa tcaattatat aattgaaacg gcttagaagt tggcttccaa tagttccatc
      481 acgttcggag ttacctacaa tatcggcaat gcttgacgaa tccggaaagg aaactacagg
      541 attgagcagg caatgtgctc cgaaacaaat ttgcggaata cggcctatct tacctttaat
      601 ttcaccattc aggccctgcc ctattgtacc acgaatataa ttttgaggaa tatgaaccga
      661 ttctgttttg aatgtttgaa accatgcatt aagctctgca cccgtatcaa taagcatttt
      721 tacattcctt cgggcagaat cagcttcgag aaccgataag tcgacaaaca ttttctgggc
      781 ttcgatgctt agcggcaaca tatcataccc tttaggtgca aaaaaagtgt ttcggttgta
      841 aaaacagaca cgcttattcg agtaatttac ttcaacaata tagtcatgaa aaatatcaac
      901 cccgataagt ccgtttattt ttgtgccggt gtgtttagat aaattaaaaa tatcctcttt
      961 caaaacaaaa accgttttgg gttccattct tatttttcct attttcagtc tgttgtaatt
     1021 gcttgagtaa gcttccaaat gcatgccgcc tcccagtccc atcaaatcct ttacatccga
     1081 gtagttaagc gaaatctgat ctccttcgag cagttcggta atgatagtat tgcgaattcc
     1141 ggaatctaat atcagattca gtggcgagga atcattaatg cggacacgga taaccacata
     1201 acttccaacc atttcgaaag gaatggaagt aattggtttt ggcttgcttg cagcatgtaa
     1261 atcggcaaac aataaaagag ataacgcaaa aagcaaaact ctcttcatac aagcggtgat
     1321 tttatcaatg agcgaaaata gtatttatat tccgaaatac ataaataatt attcacaaaa
     1381 tctgtatgag gcaaaaaata aataagatta catctaaatc acaaaatctg ataaaaataa
     1441 ctttataacg tgatgattct tatcgatgta acaataatac tttatttttg tgcgaatttt
     1501 cttaaaaaat atttattaaa agacatttga actaaaaaca acttcatcgt taaaactttg
     1561 ttgaaatata tttgtttcta attcagcaaa ttaaaacaca tcaaattata ttttcactaa
     1621 taaaacgata ttatgatcaa aacgttgttt tgtaaaatga tataatacaa gattgtaaac
     1681 ccacatggca ttaaataaaa catttcttcc ggcaattatt atattcattt tttcgtttgg
     1741 aatttcggct cagaataaat ttactatcaa cggaacagtt acagattctg gtaccggcga
     1801 aacgcttatc ggagctaata tttccatcaa agaattaccc ggaaaaggag ctgtgaccaa
     1861 tcattacgga tattattcgc ttacgcttcc gaaaggaaaa ctgactgtga tagtgggtta
     1921 tctgggttat aaaaattacg agcaacagct tgatttaatt gaaaataaac aaattaatat
     1981 caaactggaa accgattcga aggcgcttga cggcgtagaa gtttacggca aacaaaaaaa
     2041 ccacaatatt acttccaccg aaattgggat ggagaaactg gaggtaaagg aaacgttgaa
     2101 aatccccgtg ctttttggcg aagccgatat aatgaaaacc ctgaaactta ccccgggaat
     2161 aaaatcgata ggcgagggga gtggtggcat gtatgtcagg ggcggaacga actcgcaaaa
     2221 tctgatttta ctggatgaag ccacagttta taatgcggac catttacttg ggtttttctc
     2281 tactttcaat agtgatgcca tcaaagatat tgaaatgtac aaaggtaccg ctccggcaga
     2341 atatggcgga cggatttcgt ctgttttgga cgtgaaaatg aacgaaggaa ataaccagac
     2401 ttaccatatg ggaggtggaa ttggtctgat ttcaagtcgg ttgaatgtgg aaggtccaat
     2461 tataaaaaat aaaggttctt ttctgattac agcccgccgg acgtatgccg atttatttct
     2521 gaaactttcg aaagatacgt tgataaacaa caaccaactg tacttttacg acctgaacgc
     2581 caaagccaat tacagcatcg acgacaaaaa ccgtgtttat ttttcgggat atatgggacg
     2641 ggatattttc aaattcagta accgtttcgg cataaattgg ggaaatgtaa ccggaacttt
     2701 gcgctggaac catatctgga acgaaaaact cttcagcaat acttcgctca tttattctga
     2761 ctatgactat aaagttgcca tttccggaag ccgctccttc agcctgacat caattatcaa
     2821 agactggaac ctaaagcata atttcgagta ttttataaac agtgaaaata cgctctcatt
     2881 tggattaaac agcatttatc acaccttaac gccggggcaa ctggaaactt cagactcact
     2941 tttatcggcg cttcatcttc aaaataaatt tgcgttggaa aatgccctgt ttataagcga
     3001 tgcatggaaa ccaaccagta agttgagtat caatgccgga ttgcgattta cttcattcaa
     3061 tttggtgggt cccggcgatt tttattcgta tgctaacggg caggttagcg acacaactca
     3121 tttcgcatcg ggtaaaattg taaaaccggt ttatttcaat ctggaaccaa gactcaatgt
     3181 ggcttatatt ttaaatgaaa gtaactccat gaaagtaagt tacgcacggt ttgcacagaa
     3241 tttacaccag gtttccaact ccacttcttc aactcccacc gatatatgga ttgcttcgag
     3301 caataatgta aagcccgaaa tcggcgatca ggtttcgttg ggatatttcg gaaatttcaa
     3361 aaacaaccag taccagttta gtgccgaagt atattacaag cggatgcaaa atcaggtgga
     3421 tttaaaaaac ggagccgata ttcgtgccaa tgaacacatt gaaggtgagc tgctattcgg
     3481 acaaggaaga gcatacggac tggagttgat gctgaaaaag aaattcggaa agcttactgg
     3541 atggacaggc tacacctttt cgcgtaccga gcgtaaaatt gacggcatta ataacggaaa
     3601 ctggtatccg gcccggcagg atataacgca cgatttttcg atagttggaa tttacgatat
     3661 aaataaaaaa tggaccgttt cggcaacctg ggttttcaac accggaaatg ccgttacatt
     3721 ccccagcggg aaatatctta ttgatggaaa agtccagttt tattacacag aacgtaacgg
     3781 ctaccggatg cctgattacc accgattgga cgtaggagca acctacacac tgaaaaagac
     3841 caaaaagttt gaaagcagcc tgaatttttc agtttacaac gcttacggac ataaaaatgc
     3901 ttattccatc gattttgaac aggacgaaaa cgacccaaca aaaatcaatg ccgttatgac
     3961 ttatctgttt acttatgtcc cgtccattac ttacaatttt aaattttaga aaaatgaaat
     4021 tcaatatatt acatatattt ctattggcac ttttattttc ggcgtgtaca gaagatatta
     4081 aactggacct aaattcttct aatccgcagg ttgtgattga aggctcggtt ccggtagatg
     4141 gaaaagcacg tatttcgata acaaaatcca tcaattttga cactaaaaat agctttccaa
     4201 cagtgagcaa tgccattgtt acattaacag ataatatcgg aaattcggag attttgaccg
     4261 aaaatgcagc cggaatttac acttcaaatt caatggtagg aatagtggga cgaacatatt
     4321 cactttcgat taaaaccgac gataaaacaa ttacttcgtc gtgcaagatt cctgatcccg
     4381 tacgttttga ttcgctcgtt gtgaaagtgg ctgaaaattt cagaagcggc ccctttggag
     4441 gaaatgaagc gggaaccttg tatacggtaa ctgcgatgta caaagatccg ggatcggtgg
     4501 caaattatta tcgtttcata gaatacataa acggaaaatc caccggaaat atatatgtgt
     4561 atgaagacag gtttacaaat ggaaaatcag ctgaaagaaa tttgttgaac ttcaaccggt
     4621 atctta
//
LOCUS       DATDNM010000137         2213 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_445510, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000137 DATDNM010000000
VERSION     DATDNM010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445510"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /locus_tag="VI413_02335"
     CDS             <1..465
                     /locus_tag="VI413_02335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005779953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEY6913487.1"
                     /translation="KIKYIVPFVSLIHGVDSYKLLAEIDKQAAKAGKIVNCLLQIHIA
                     REETKFGFSADELIEMLRVGEWQTLKNVRICGLMGMATFTDNREQIRTEFRGLKTLFD
                     QVKTNYFDSKPSFCELSMGMSDDYQIAIEEGSTMVRVGSLIFGARQYITPNP"
     gene            520..1431
                     /gene="miaA"
                     /locus_tag="VI413_02340"
     CDS             520..1431
                     /gene="miaA"
                     /locus_tag="VI413_02340"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007844491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEY6913488.1"
                     /translation="MSNYQLITSLGPTASGKTTLAAALAHRMESEIISADSRQVYRGM
                     DIGTGKDLADYVIANKHIPYHLIDICDAGYKYNVFEFQRDFQKVFSEITSKAKLPILC
                     GGTGLYIEAVLKGYKLPAVPENKQLRESLEGKTLEELGNILSQNVTLHNKTDIDSAKR
                     AIRAIEIAEYSTKQTPKYHEFQSINSLIIGLDLDREVRRQKITQRLKSRLKEGMIEEV
                     KALLNSGIAAEDLIYYGLEYKFVTKYLIGELSYNEMFAQLEVAIHQFAKRQMTWFRGM
                     EKRGFTIHWIPAELPTEEKVNKIMSFL"
     gene            complement(1426..>2213)
                     /locus_tag="VI413_02345"
     CDS             complement(1426..>2213)
                     /locus_tag="VI413_02345"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6913489.1"
                     /translation="GIGSAMKQAQAYINVSELIAWTVIAVGISYLFEFFIRQIQKIKV
                     EKYFSKPTNSNYSMNNQFADLIDIRLVNLDKKFNDQVVLNSINTSFNSKNITCINGPS
                     GSGKTTLLRLIAGLEKPDAGDIKRIDNLQFGYSFQDVRLLPWMTVAENIAYVFPTQTH
                     KQEISNLVFHLLKNMELTDHAHKYPHELSGGQQQRVGLARALVVKPDILLLDEPFTGL
                     DNELKIKVSEFLFKWIKENKPLVIWATHEEVKPIGLEVVDFEL"
BASE COUNT          694 a          440 c          438 g          641 t
ORIGIN      
        1 aaaattaagt atattgttcc ttttgtttca ctgattcacg gagttgactc atataaattg
       61 ctcgctgaaa tcgacaaaca agctgccaaa gccggaaaaa tagtcaactg cttacttcaa
      121 atacatattg cacgggaaga aaccaaattc ggtttctcag ccgatgaatt gattgaaatg
      181 ctgagagtgg gagagtggca aaccctgaaa aatgtacgta tttgcggatt aatgggaatg
      241 gctaccttta ccgacaaccg cgaacagatc cggactgaat tccgtgggtt aaaaaccttg
      301 ttcgatcagg tgaaaacgaa ttatttcgat tcgaaacctt cgttctgcga actttccatg
      361 ggtatgtccg acgattatca aattgcgata gaagagggaa gtaccatggt aagagtggga
      421 agcctgattt tcggagcccg gcaatatata acccctaacc cctgaagggg attattttca
      481 caaactcccc tttaggggct gggggttctt gtattatcca tgtcaaatta tcaactcata
      541 accagtctcg gcccgactgc ctccggtaaa acaacattgg cagcggcact ggctcacaga
      601 atggaatcgg aaattatcag cgccgattcc cgacaggttt atcgtggaat ggatattgga
      661 acaggtaaag atctggcgga ttatgtgatt gctaacaaac acattcctta tcatctgatt
      721 gatatctgcg atgccggcta caaatacaac gtgtttgaat tccaacgcga ttttcagaaa
      781 gttttttcag aaataacttc gaaagccaaa ttacccattc tttgcggtgg cacaggattg
      841 tatatcgagg cagtgttaaa aggctataaa ctgcccgcag ttcccgaaaa taaacaactt
      901 agagaaagtc ttgaaggcaa aacgctggaa gagttgggca acatcctcag ccaaaatgtg
      961 actctacata acaagactga tattgattca gctaaaaggg ccattcgcgc aatagaaatt
     1021 gcagaataca gcacaaagca aactccgaaa tatcatgaat ttcaatcaat taatagtttg
     1081 attattggcc ttgatctgga tcgggaagta cgtaggcaga aaattaccca acgcctgaaa
     1141 tcccgattga aagaaggaat gattgaagag gtaaaagcat tgctcaatag cggaattgca
     1201 gccgaagatc tgatttatta cggccttgaa tataaatttg tgacgaaata tctgattgga
     1261 gaactaagct ataacgaaat gttcgctcaa cttgaagttg ctatccatca gtttgctaaa
     1321 cggcagatga cctggtttcg cggcatggaa aaacgaggtt ttacaattca ttggattcct
     1381 gcagaattgc caacagaaga aaaagtgaat aagataatga gttttctata attcaaaatc
     1441 tacaacttcc aggccgattg gctttacttc ttcgtgtgtt gcccaaatta ccagaggctt
     1501 attttcttta atccatttaa acagaaattc tgagactttg attttcagtt cgttatcaag
     1561 tcctgtgaaa ggctcatcaa gcaataaaat atccggcttt actaccaacg cccgagccaa
     1621 acctacccgt tgttgttgcc caccacttaa ttcatgtgga tacttatgtg catgatcggt
     1681 tagttccatg tttttcaaca ggtgaaatac caaattgctt atttcctgtt tatgtgtttg
     1741 tgttggaaat acataagcaa tattttctgc tactgtcatc cacggcagta aacgtacatc
     1801 ctgaaatgaa taaccaaatt gcaaattatc aattctttta atgtcaccgg catcaggttt
     1861 ttcaagtccg gctatcagtc ggagtaaggt cgtttttcca cttccggaag gtccattgat
     1921 acaggtaata ttcttcgaat tgaacgatgt atttatcgaa ttcaaaacca cttgatcatt
     1981 aaacttttta tccagattta ctaatctaat atctattaaa tcagcaaatt gattattcat
     2041 tgaataatta gagttagtcg gtttcgaaaa atatttctcg actttgattt tttgaatctg
     2101 cctgataaaa aattcaaaca aataactgat tccaacggca attaccgtcc aggcgatcag
     2161 ttcagaaacg ttaatataag cctgggcctg cttcatggcg cttccaattc cgt
//
LOCUS       DATDNM010000138         3469 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1619718, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000138 DATDNM010000000
VERSION     DATDNM010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3469)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3469)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3469
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1619718"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(234..2135)
                     /gene="nuoL"
                     /locus_tag="VI413_02350"
     CDS             complement(234..2135)
                     /gene="nuoL"
                     /locus_tag="VI413_02350"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013611700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEY6913490.1"
                     /translation="MQYTLLILVLPLLSFIVLGLVDNKWKPRVAGTIGTVVLGIITAL
                     SYYTAWEYFSTARLDGVYQKIIPYNMEWLRFTENLHINLGILLDPISVMMLVVITTVS
                     FMVNIYSLGYMVNERGFERYYAFLSLFTFSMLGLVVATNIFQMYIFWELVGVSSFLLI
                     GFYYTKPSAVAAAKKAFIVTRFADLFFLIGILVLSFFTKTFDFGVLTTGDASVFSGFT
                     GVTFMGFSALSWAMTLIFIGGAGKSAMFPLQIWLPDAMEGPTPVSALIHAATMVVAGV
                     FLVARLFPIYEGYTPEVLHGIAYVGAFTSLFAAVIACVQTDIKRVLAFSTISQIGFMM
                     VSLGVSGYGEHEGLGYMASMFHLFTHAMFKALLFLGAGSVIHAVHSNEMNHMGGLRKY
                     MPITNWTFLIACLAIAGIPPFSGFFSKDEILSACYEFSPYMGGIMSFIAGLTAFYMFR
                     LYFNIFWGKEHKHQHTPHESPFAMALPLVFLAVVTVVAGFIPFGHFVTSDRANYDIHI
                     DLTVASVSIGIALVGIIIATLMYRKESEVPKKLEVKFHGLYMAAFRRFYIDEVYLFIT
                     KKIVFNGISRPLAWFDRHVIDATMDGFANTTQWVSLRIKGIQSGQVQQYAYVFLLGTL
                     LIAALVFFI"
     gene            complement(2179..2517)
                     /gene="nuoK"
                     /locus_tag="VI413_02355"
     CDS             complement(2179..2517)
                     /gene="nuoK"
                     /locus_tag="VI413_02355"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEY6913491.1"
                     /translation="MDILNNILAGQVPMELYLGVSLIMFFAGVYGFLSRRSMLMILIS
                     IELMLNAADINFVVFNRYLFPGQLEGFYFALFTIAIAACETAVAIAIIINIYRNLSSV
                     EVGNLDQMKE"
     gene            complement(2567..3070)
                     /locus_tag="VI413_02360"
     CDS             complement(2567..3070)
                     /locus_tag="VI413_02360"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006841404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEY6913492.1"
                     /translation="MAHQIIFFVLAAIIAIFSIMAVTSKRIIRSATYLLFVLLATAGL
                     YLLLGYSYLFAVQIAVYAGGVMVLFIFAILLTNKPGELLKTELPVRRVVAGATVLAGL
                     AFCGHIIYWNIKKVSTLVEQADLTPQQLGHTMMGTDKFQYLLPFETISILLLACIVGA
                     IMIARRR"
     gene            complement(3102..>3469)
                     /locus_tag="VI413_02365"
     CDS             complement(3102..>3469)
                     /locus_tag="VI413_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006841405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY6913493.1"
                     /translation="GICQMNCPNGTILVTSQIIETEDGKKKKILDTHQWDLGMCTFCN
                     LCVITCPSDAIKFDNTFENAVFTRSKLVHKLNHEGSKLREKKKEVKPTVETKPVAEEK
                     PVVEKKATEEVKPEEPKAE"
BASE COUNT         1136 a          710 c          665 g          958 t
ORIGIN      
        1 ccggctgcac ggtcggtgag atacatgtat gtcaacacgc ccgataaaat catcaaaagc
       61 gtagcccctg tagtcatgac gaacagtaac tgtttgcggc tgcttgacaa aaacaagccc
      121 atcatcatta aaaccggtac gagaacgaat aaggataaaa agttcatatc ttaatcttta
      181 aaatattttg ttttgtttta ggtcaaactc accgaattga ccgcgtacac catttaaata
      241 aagaatacca atgctgcaat taataaagtt cccaacagga atacatacgc atattgttgc
      301 acttgccctg attgaattcc tttgattcgt aaagaaaccc attgggttgt attggcaaat
      361 ccatccatag tagcatcaat tacatggcgg tcgaaccatg ccaatggacg tgaaatgcca
      421 ttgaacacga ttttctttgt aatgaacaaa tacacttcgt cgatatagaa acgacggaaa
      481 gctgccatat ataagccgtg gaattttact tccagttttt ttggcacttc gctttctttg
      541 cggtacataa gtgttgcgat aataatacca accaatgcaa taccaatact tacagaagcc
      601 actgtcaaat caatatgaat atcgtagttg gctcggtcgc ttgttacgaa atgtccaaat
      661 ggaataaatc cggcaacgac ggttacaact gccaagaata ccagcggcaa agccattgca
      721 aacggagatt catgtggcgt gtgttgatgt ttgtgttctt tgccccagaa gatattgaaa
      781 tacaaacgga acatatagaa agctgtcaac cctgcaatga aactcataat accacccata
      841 tacgggctga attcataaca agctgaaagt atttcgtctt tactgaagaa tcctgagaaa
      901 ggaggaatac ccgcaattgc caaacaagca atcaagaatg tccagttagt gataggcata
      961 tatttgcgaa gtccgcccat gtggttcatc tcgttgctgt gtacggcatg aatcacagaa
     1021 ccggcaccaa ggaataacag agctttgaac atagcatgcg taaacaagtg gaacatagaa
     1081 gccatgtaac caagaccttc gtgttcacca taacccgaaa cacctaacga caccatcata
     1141 aaaccaattt gagaaatggt tgagaaggca agtacgcgtt taatatctgt ttgaacgcag
     1201 gcgataacag ctgcaaaaag agaagtgaat gcacctacat aagcaattcc gtgtaatact
     1261 tcaggagtgt aaccttcgta aatagggaag agtcgggcaa ccaggaatac accggcaaca
     1321 accatggttg cggcgtggat caatgcagaa acaggagttg gaccttccat tgcgtccggt
     1381 aaccatattt gtaatgggaa catagccgat ttacctgcac caccgataaa gataagagtc
     1441 attgcccagc ttaatgccga gaagcccata aaggtaacgc ctgtaaatcc ggagaatacg
     1501 cttgcgtcgc ctgtagtcaa tacaccaaaa tcaaatgttt tagtaaagaa agacaataca
     1561 aggataccaa tcaggaagaa taagtcggca aaacgggtaa cgataaatgc ttttttggca
     1621 gctgcaacag ctgacggttt tgtgtagtag aatccgatca aaaggaatga tgaaacaccc
     1681 actaattccc agaaaatata catttggaaa atattggtag ctactacaag tcccaacatg
     1741 gagaatgtaa ataatgaaag gaaagcataa tagcgttcaa aacctctttc gtttaccatg
     1801 taacccaaac tgtaaatgtt taccataaac gatacagtgg tgattactac cagcatcatt
     1861 accgaaatag gatccaacag gatacctaaa ttgatatgaa ggttttcagt aaaacgcaac
     1921 cattccatat tgtatggaat aattttttga taaactccgt ccagtctggc tgttgagaaa
     1981 tattcccagg cagtataata cgaaagtgcc gtgataatac ctaaaacgac agttccgatt
     2041 gttccggcca ctctgggctt ccacttattg tccacaagtc ccaacacaat gaaactaagc
     2101 aatggaagta ctaaaatcaa taatgtatat tgcatattat ctaattgtca attgtaaatg
     2161 tttaaattgt caatgtaatt actctttcat ttggtctaag ttacccactt caacgctcga
     2221 cagattgcga taaatattga taatgatcgc aatggcaacg gcagtttcac aagcggcaat
     2281 agctatggtg aaaagtgcga agtagaaacc ttccagttga cccggaaata aatagcggtt
     2341 aaacactaca aaattaatat ctgcagcatt gagcataagt tcaattgaaa tcaggatcat
     2401 tagcatgctt ctgcgtgaca aaaaaccata cactccggca aagaacataa ttaaacttac
     2461 acctaagtaa agttccattg gtacttgccc ggctaaaatg ttatttaaaa tatccatatc
     2521 gttttgataa gttaattcgt ttattagttg attgacttgg ttgcgtttat cgtcttcttg
     2581 caatcataat tgcacccacg atacacgcca acaataagat actgatcgtt tcgaaaggca
     2641 ataagtactg gaatttatca gttcccatca tggtatgacc taattgttgg ggagtaagat
     2701 cggcttgctc taccaatgta gaaacttttt tgatattcca gtaaataata tgtccgcaga
     2761 atgctaaacc ggccaatact gttgctcccg caactacacg gcggacagga agttctgttt
     2821 tcaataactc gcccggctta ttggtaagga ggatggcgaa gataaataat accattaccc
     2881 cacctgcata aactgcaatc tggacagcga ataagtagct gtaacccaac aataggtaca
     2941 acccagcagt agctaataat acgaataata aataagttgc agaacggata attcttttag
     3001 aagttaccgc cataatagag aaaatggcta tgattgccgc taatacgaaa aatataattt
     3061 gatgtgccat aattttttat gtctatatct tttttgtctt attattcagc tttgggctct
     3121 tcaggtttaa cttcttcagt tgctttcttt tcaaccacag gtttctcttc tgctaccggt
     3181 ttagtttcaa cagtaggttt tacttctttt ttcttttcac gaagttttga cccttcgtga
     3241 tttagtttgt gaaccagttt gctacgtgtg aatacagcgt tttcgaacgt gttatcaaat
     3301 ttgattgcat ccgaagggca ggtaatcaca caaaggttac agaaagtaca catacccaaa
     3361 tcccattggt gggtgtccag gatttttttc ttcttgccat cttccgtctc tattatctgc
     3421 gaagtcacaa ggatagttcc gttcgggcag ttcatttggc aaataccac
//
LOCUS       DATDNM010000139         6038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1726922, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000139 DATDNM010000000
VERSION     DATDNM010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6038
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1726922"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1282)
                     /locus_tag="VI413_02370"
     CDS             complement(<1..1282)
                     /locus_tag="VI413_02370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEY6913494.1"
                     /translation="MTENKKIEYVSYLDHQGKYKGIFAWIFATDHKRIGLLYLYAIMT
                     FFFVGALLGLLMRVELIAPGQTIMKPQTYNGVFTVHGIIMIFMVVIPGLSAIFGNFFL
                     PIQIGAKDVAFPKLNRFSWWIFMAGSALAIASQFLRNGPPDTGWTFYAPYSTTTGTNV
                     IMATTAAFVLGFSSILTGLNFIVTIHRMRGPGMTFFHMPLFPWAIYATAWIQLLATPI
                     IGITLIMLIAERLFGIGFFDPNLGGDPLLYQHLFWIYSHPAVYVMILPAMGVISEIIP
                     TFCQRKIYGYKAIALSSLAIAGVGFLVWGHHMYTSGMSENARWFFSLLTFIVAVPSAI
                     KVFNWLSTMYKGSIDLKPPFLYALAFIFLFIIGGTTGLILGSVATNVQVHDTSFVVAH
                     FHYIIFGGMGFAFFAAIHYWLPKMYGRMYNIKRAN"
     gene            complement(1368..1769)
                     /locus_tag="VI413_02375"
     CDS             complement(1368..1769)
                     /locus_tag="VI413_02375"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY6913495.1"
                     /translation="MKNKFLVGAFSLIVFSIISINAVAVQPKEMITKVEMGPINPQLV
                     KAGSSLFKSKCIICHDLDQNKVGPALRNVTKQRKPDYIMNVIYNPAKMQKIDPVYKGL
                     LVKFKNVPMPDQNLTKAQVRSLLEYLRSVVK"
     gene            complement(1988..2755)
                     /locus_tag="VI413_02380"
     CDS             complement(1988..2755)
                     /locus_tag="VI413_02380"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY6913496.1"
                     /translation="MKMKKLTLAISLLISLLFSANAQVDQSPEVGVIEHLGKQIPLDL
                     KFVNDKFDTVTLKQLINKPTILSFVYFDCPGLCSPLLEGVGDVIRKTNLELGKDYQVI
                     TISFNYRDTPQKAKEKKTRFVEKYSQGKGDGWIFLTTDSATIFKITDATGFKTKAVGL
                     DFVHPSAIIAISPQGMITRYLYGITFLPNDFKLSIIEANKEQPRPTIQRILMLCYSYD
                     QTSQRFALDVTKIAGILIVFFILVFIVVYLLKPKKKK"
     gene            complement(2850..3233)
                     /locus_tag="VI413_02385"
     CDS             complement(2850..3233)
                     /locus_tag="VI413_02385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913497.1"
                     /translation="MKNLAIIGRVLFALPFGLMGLNHFLMTNIFLGMMSSFVPAGAYT
                     ILIIGALLIAASISIILNKNIKLACFGLAGLLFLFIATIHIPGLFTINWQLALVELLK
                     DAGLMGGALLFAVYSDSQKTESIKE"
     gene            complement(3247..4155)
                     /locus_tag="VI413_02390"
     CDS             complement(3247..4155)
                     /locus_tag="VI413_02390"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY6913498.1"
                     /translation="MLRKNINLKVSVTLIITALFCVNTIAQNNWNVPEDKKLKNSYIK
                     FDAASASQGEAIYTKNCASCHGNPGKNNSLKSLNPVPPDLSSAKTQQLTDGELFYILS
                     TGRSLMPSFKNVLSEDERWKTISYIRSFNKGYVQTVSKFDPNKSKLVKIDIKYDVATH
                     KMHVVAVANEKSGVVALKDAEIALFATRYFGRLQIDKSTRTDKDGVANFVFPKDLPGD
                     KKGIVELVVKVNDENYGEIEYLKKMNIGIPTDKPALNEKRAIWNIMAKAPIWIIALYS
                     FGILCFGLIMLYIFYNLRKLFKSAKN"
     gene            complement(4166..5473)
                     /gene="nrfD"
                     /locus_tag="VI413_02395"
     CDS             complement(4166..5473)
                     /gene="nrfD"
                     /locus_tag="VI413_02395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HEY6913499.1"
                     /translation="MSDNLNTEKITSDLLKSIQLNKSFIVWMGFLGTALLVCLYAYYL
                     QLRDGLIVTGLGDYVSWGMYISNFVFFVATSLIGMLISAVLGLSGQKWAAPLARIAEI
                     IALAFAAVAGLVIVMDMGHPERLLYVFIHGRIQSPIVWDVTVVTIYVVISTLLLYIPL
                     IPDLKICYDKLDKLPPMIRNLYKVLSLNWSGTIEQQKMIKQSTRALSIFIIPVALAIH
                     TVTSWLFASTSRVGWDSSIFGPYFVTGAFVSGTAAVAIAMYFYRYNYKLQDYITDMHF
                     DKIGKLLVLLSLVYLYFNLNEYMVPAYKMKKFDAMHIHGLFAGSHALMFWSVQIIGLV
                     LPIILLVFKQMRKPLPLLVISLFMLLGAWFKRYLIVVPTQEHPFLPIQNVPLNWKIYT
                     PTLAEILITIAPMILVLIIVTILSKIVPIIPVTETIEELEETK"
     gene            complement(5577..>6038)
                     /locus_tag="VI413_02400"
     CDS             complement(5577..>6038)
                     /locus_tag="VI413_02400"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY6913500.1"
                     /translation="QDGIVLIDNERCIGCRFCIAACPYSARIFNWQEPIKSLEDENIP
                     YNVELNVPQRKGTVSKCLFSADRLREGKLPYCVSACPNGVYYFGDENEDAVTNGTTKE
                     TVRFKKLLEDNGGYTLMPELGTHPRVYYLPAKGKDYPFQEKDKEEAAEHLG"
BASE COUNT         1905 a         1133 c         1083 g         1917 t
ORIGIN      
        1 tgtttgcacg tttaatattg tacattcttc catacatttt cggcaaccag taatgaattg
       61 ctgcaaagaa tgcaaagccc atccctccaa aaattatgta atggaagtga gcaacaacaa
      121 acgaagtgtc atgcacttgt acgtttgttg caacagaccc aagaataaga cctgttgttc
      181 ctccaattat aaaaaggaaa ataaatgcca aagcataaag aaaaggtggt ttcaaatcaa
      241 ttgaaccttt atacatggtc gacagccagt tgaacacttt aatagcactt ggcacagcca
      301 caataaatgt tagtaaagaa aaaaaccagc gtgcattttc gctcatgccc gaagtgtaca
      361 tatgatgtcc ccatacaagg aaaccaacac ctgcaatggc aagacttgac aatgcaatag
      421 ctttataacc atatattttg cgctgacaaa atgttggaat aatctcagaa ataacaccca
      481 tggcaggaag aatcattaca taaacagccg ggtgtgaata aatccagaac aaatgttggt
      541 acaacaaagg atcaccacct aaattagggt caaaaaaacc aattccgaaa agacgttcgg
      601 caattagcat aatcagtgtt ataccaatga ttggtgttgc tagtagttgt atccatgctg
      661 ttgcataaat tgcccaggga aataaaggca tgtgaaaaaa tgtcattccc gggccacgca
      721 ttctatgaat ggttacaata aaatttaatc cggtcagaat tgaagagaaa ccaagtacaa
      781 aagcagctgt agtagccata atcacattgg ttccggttgt agtactgtac ggtgcataaa
      841 atgtccaacc agtatcggga ggaccgtttc tcaaaaactg tgaggcaatc gctaatgcgc
      901 tccctgccat aaaaatccac caggagaacc tgttaagctt tggaaaagcc acatcttttg
      961 ctccaatttg tattggcaaa aagaaatttc caaaaatagc cgataaaccg ggtattacaa
     1021 ccataaaaat catgattatc ccatgcacgg taaatactcc attataagtt tgtggtttca
     1081 ttatagtttg tccgggtgct atgagttcca cacgcatcag caaacctaaa agtgcaccaa
     1141 caaagaagaa agtcataatt gcataaagat agagcagccc gattctttta tgatcggtgg
     1201 caaatatcca tgcaaaaata cctttgtact ttccttgatg gtcgagataa cttacatact
     1261 caattttttt attctcagtc atataattaa taaattatta tttgtgaaac attcaacctt
     1321 ttagaaacaa actaatgcgg tggtattaat atcgtgtttg ttaatgttta tttgacaaca
     1381 gatcttagat attcaagtag tgagcgaacc tgtgctttag tcaaattctg gtcaggcata
     1441 ggtacattct tgaatttcac aagcaggcct ttataaacag ggtcgatctt ttgcattttt
     1501 gcaggattat aaatgacatt cataatataa tcaggctttc tttgtttagt cacatttctt
     1561 aaagcaggtc caactttatt ttggtcgagg tcatggcata taatacattt tgacttgaat
     1621 aaactgctac cagccttaac cagttgagga ttgattggtc ccatttctac tttggttatc
     1681 atttctttgg gttgcactgc aactgcattg atactaatta ttgaaaaaac aattagtgag
     1741 aatgctccaa ctaagaattt atttttcata attattcgtt ttttatattg tttaaagaaa
     1801 gagctacgca aatagctata ttatattgtt gttgcggtca tttttaccca cggcattata
     1861 gttggagttg ctcccatcaa atttttggta agcaataaaa cccccactgt tttaatgaat
     1921 tggaataatt cactaaccct tattgtgtgt tttccatgtg caataattaa aggtttaatt
     1981 ctattgttta ttttttcttt ttcggtttta gcaggtacac tacaatgaat actaaaataa
     2041 agaatacaat gagtatcccg gcaatttttg ttacatccag tgcaaatcgc tgacttgttt
     2101 ggtcgtagct gtagcaaagc atcaatatgc gttgaattgt tggtcggggc tgctctttat
     2161 tggcttcgat gattgataat ttgaagtcat ttggcaggaa tgtaattcca tacaaatagc
     2221 gtgttatcat tccttgaggg ctgatggcta tgattgcaga tggatgaaca aaatccaagc
     2281 ctactgcttt ggttttaaaa ccggtagcat ctgtaatttt gaaaattgtt gcactatctg
     2341 ttgtcagaaa aatccagcca tctcctttgc cctgtgagta cttttctaca aatcgtgtct
     2401 ttttttcttt agctttctga ggtgtatccc tgtagttaaa actaatagta attacctgat
     2461 agtccttgcc taattccaga tttgtctttc ttatgacatc gccaacacct tcaagcaatg
     2521 gactgcaaag cccaggacaa tcgaaataca caaacgataa aatggtaggt ttgtttatca
     2581 gctgttttaa tgtaacagta tcgaatttat catttacaaa cttcaaatcc agtggaatct
     2641 gttttcctag atgttcaatt acacctactt ccggagattg gtctacttgc gcattagcgc
     2701 taaataataa agaaattaat aatgaaattg caagtgtgag ttttttcatt ttcatgtgta
     2761 aataattgtt ttttaaaggt cacatggaac tcgcatttga ttttcatgct cgttggttta
     2821 agcctgatta aatgctcgtt tcataaactt tattctttaa tactttctgt tttttgggaa
     2881 tcagagtaaa cagcaaacaa aagagcccca cccattaatc ccgcatcctt tagaagctct
     2941 actaaagcta gttgccaatt aattgtaaac aatccaggga tgtgaatagt tgcaatgaaa
     3001 aggaataata atccggccag cccgaagcag gctaatttga tgtttttatt taaaataatg
     3061 ctgatgcttg ctgctattag taaggctccg ataatcaata tcgtataagc acctgcagga
     3121 acaaatgaag acatcatgcc taagaaaata ttagtcatca aaaaatgatt taaacccatt
     3181 aatccaaatg gtaaagcaaa aagaactcgt ccgataattg caagattttt catgattcta
     3241 ttttttttag tttttagcag atttaaacag cttacgtaaa ttatagaaaa tatatagcat
     3301 tattaatcca aagcacagaa ttccgaatga atacaaagca atgatccaaa ttggcgcttt
     3361 agccatgata ttccagattg ctcttttttc attcaaagcc ggcttgtcag tcggaatacc
     3421 aatattcatt ttcttcaggt actctatttc gccataattt tcatcattta ctttaacgac
     3481 cagttcaact atcccttttt tatctccggg taagtctttt ggaaatacaa agttagcaac
     3541 accatcttta tcggtccggg ttgatttgtc gatttggaga cgtccaaaat aacgggttgc
     3601 aaacaaggcg atttcagcat ctttcagtgc aactactccg gatttctcgt tagctacagc
     3661 aacaacatgc attttatgtg ttgcaacatc atacttaata tctatcttga ctaacttgct
     3721 tttattcggg tcaaattttg aaacagtttg aacatatcct ttattaaagc tgcgtatata
     3781 tgaaattgtt ttccaccttt cgtcttcgga tagtacattc ttgaacgatg gcataagcga
     3841 tcttcctgtt gatagaatgt aaaacaattc cccatcggtc agttgctgcg tttttgccga
     3901 tgacaaatcg ggtgggacag ggtttaatga cttcaggctg ttgtttttgc ctgggtttcc
     3961 atggcaagag gcacagtttt tagtataaat agcctctccc tggctcgctg atgctgcgtc
     4021 aaacttgata tagctgtttt tgagtttttt atcttcaggt acattccaat tgttctgggc
     4081 tatggtgttt acacaaaata atgctgtaat tattaaagtt acagaaacct ttaaattgat
     4141 attctttcta agcataatta gtattttatt ttgtttcttc gagttcttca atcgtttcag
     4201 taacaggaat aatgggaaca atcttagata aaattgttac tataataagc actaaaatca
     4261 ttggtgctat tgtaattaaa atctcggcga gcgtaggagt gtaaattttc cagtttaatg
     4321 gcacattttg tattggcagg aatgggtgtt cctgagtcgg aaccacaatt agataacgtt
     4381 taaaccaggc tcctaacaac ataaataatg aaatgactaa caagggtaat ggttttctca
     4441 tttgtttgaa aaccagcagg atgattggta aaacaagacc tattatttgt actgaccaaa
     4501 acattaaagc atgacttccg gcaaataggc catggatatg catagcatca aattttttca
     4561 ttttatatgc gggaaccata tattcattca aattgaaata caaataaaca agtgataaga
     4621 gtactaataa cttcccgatt ttatcgaaat gcatgtcggt aatataatct tgtaatttgt
     4681 aattgtatct atagaaatac atggcgatag ctacagcagc agtacctgat acaaatgcac
     4741 ccgtaacgaa atatggccca aaaatacttg aatcccagcc aacacgcgat gtgcttgcaa
     4801 aaagccagga tgtgacggta tgaattgcca acgcaacggg aattatgaaa atagataatg
     4861 cccgtgttga ttgtttgatc attttttgtt gctcgattgt tccactccag ttcagtgaca
     4921 atactttata tagattgcgg atcatcggag gcaacttatc taatttatcg tagcagattt
     4981 tcaaatcggg aataagtgga atgtaaagaa gcaatgtact aatgactaca taaatcgtga
     5041 ccaccgttac gtcccataca atgggtgatt ggatacgccc atgaataaag acatacaaaa
     5101 ggcgctctgg atgtcccatg tccataacaa taaccaatcc tgccaccgct gcgaatgcta
     5161 aagcaataat ctcagcaatg cgggcaagag gtgctgccca tttctgaccg gaaagtccaa
     5221 gcacagcact gattaacatc ccgattaagc tggtcgcaac gaaaaataca aagttggata
     5281 tatacatacc ccacgatacg taatcgccga ggccggtaac aatcaaacca tctctcagtt
     5341 gcaaataata ggcatataaa caaaccagta atgcagttcc aaggaaaccc atccaaacaa
     5401 tgaaactttt attcagctgg atggatttta atagatcgga tgtgattttt tctgtattta
     5461 aattatctga cataatattt atttattatg acccgttctc cgtcagccga cggagaacgg
     5521 gatgagttta ttgttaagta tgttgatatt tatgcccgtt aagggtttgg ggtcttctat
     5581 cccaaatgtt cagcagcttc ttctttatct ttttcctgga atggatagtc tttacctttt
     5641 gcaggtaaat agtaaacccg tgggtgggtt cccaattccg gcattaaagt atatcctcca
     5701 ttatcttcca gcagtttttt gaagcgtaca gtttcttttg tagttccatt agttacggca
     5761 tcttcatttt catcaccgaa ataataaaca ccatttggac aagccgaaac acaataagga
     5821 agttttcctt ctcgtagtct gtctgcactg aataagcatt tgctaacagt cccttttcgt
     5881 tgcggaacgt ttaattcaac attgtaaggt atattctcat cttcaagaga tttgataggc
     5941 tcctgccagt tgaaaatacg ggcactatac gggcatgcag caatacagaa cctgcaaccg
     6001 atacatcttt cgttatcaat taaaacgata ccgtcctg
//
LOCUS       DATDNM010000140         5392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1513268, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000140 DATDNM010000000
VERSION     DATDNM010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5392
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1513268"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..234)
                     /locus_tag="VI413_02405"
     CDS             complement(<1..234)
                     /locus_tag="VI413_02405"
                     /inference="COORDINATES: protein motif:HMM:NF014601.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase N-terminal
                     domain-containing protein"
                     /protein_id="HEY6913501.1"
                     /translation="MKIKIVIVGLGGVGGYYGGMLAKRYVDDPEVEIYFVARGMHLKK
                     VQENGLTLITETGTFQVYPTLATDNVSEIGIADY"
     gene            complement(406..1671)
                     /locus_tag="VI413_02410"
     CDS             complement(406..1671)
                     /locus_tag="VI413_02410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEY6913502.1"
                     /translation="MYFCAKLKNTIMLDVGLTTFMILATSLVMLMTPGLAFFYGGLGS
                     NKNILSIMMQSFVSMGISTVLWFAFGYSVCFSGNLHSGTDFFGIIGNLDKAFYHGITP
                     STLYSADKRFPEYIFIAYQMMFAIITPALITGAFINRVSFRSYIVFLVLWQILVYYPF
                     VHMVWGGGILADWGVFDFAGGITVHATAGFAALASVYFVGRRNEKHEPNNIPLVAIGT
                     ALLWFGWYGFNAGSELAVNSVTISAFLNTDTAASFAAVTWLLIEWNTGKKKPTFIGLM
                     TGAVAGLATITPAAGYVDIYSAAIIGVIAAIGCYMAVHFKEKKGWDDALDVWGVHGMG
                     GVIGTICLGFFANSAINSAVPNGIFFGGNGMLLLKECVAILIAIVYAFGFTVLIFKVI
                     NKFIPVRVTELEQTVGLDLAHHGEVARRH"
     gene            complement(1892..3208)
                     /locus_tag="VI413_02415"
     CDS             complement(1892..3208)
                     /locus_tag="VI413_02415"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY6913503.1"
                     /translation="MKRKLIVLLILSGFVSVYSQTLYYPPLSSQATWETVSPVSLGWS
                     MNKIDTLYNFLEKENTKAFIVLKDGKIVLEKYFGTFMADSIWYWASAGKTITSFLIGT
                     AQEAGYLSVADPTNKYLGAGWTSCSVAQENAITIRHQLTMTSGLDDGVDDNHCTSPDC
                     LKYLAEPGTRWAYHNAPYTLLENVLENATSTNINLYTQSKLKAKTGITGIWAMLDYDN
                     VYFSTARSMARYGLLAQNKFIWKTDTLLHDADYVRAMTNTSQELNKSYGYLWWLNGKQ
                     SYMLPTLQYVFQGSYAPKAPADMFAGLGKNGQIVSVSPSQGLVVVRMGNQPGSTVGDI
                     TPQFCNEIWEKLNDVIYNRTAINEVASSMNETKIYPNSGGDSMTLEFDGPCERLVVFD
                     MLAKPVKIFLFPQSPLNIEVGSLPKGVYLVQLKSGLRLKKMFFIRK"
     gene            3444..3794
                     /gene="rpsF"
                     /locus_tag="VI413_02420"
     CDS             3444..3794
                     /gene="rpsF"
                     /locus_tag="VI413_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEY6913504.1"
                     /translation="MLNHYETVFILTPVLSDVQMKEAVEKFKSILTENGAIITNEENW
                     GLRKLAYPIQKKSTGFYSLLQFDAESSVIATLETQFRRDERVLRFLSFRLDKYAFEYA
                     EKRKNVKSKEVKEN"
     gene            3799..4068
                     /gene="rpsR"
                     /locus_tag="VI413_02425"
     CDS             3799..4068
                     /gene="rpsR"
                     /locus_tag="VI413_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005637107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEY6913505.1"
                     /translation="MAANNGDIRYLTPPSVDVKKKKYCRFKKSGIRYIDYKDPEFLKK
                     FLNEQGKILPRRLTGTSLKFQRKVAQAVKRARHIALLPYVTDMMK"
     gene            4089..4532
                     /gene="rplI"
                     /locus_tag="VI413_02430"
     CDS             4089..4532
                     /gene="rplI"
                     /locus_tag="VI413_02430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016276980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEY6913506.1"
                     /translation="MEIILKEDVINLGYKGDIVSVKAGYGRNFLIPTKKAILATESAK
                     KMLAEDLKQRAHKLERLKNDAIELAEKLKDVVLTVGAKTSTTGKIFGAVGPIQIADAF
                     EKAGFAVDRKVIVLKDAVKEIGSYKATLKLHKEVTVEVAFEVVAE"
     gene            complement(4604..>5392)
                     /locus_tag="VI413_02435"
     CDS             complement(4604..>5392)
                     /locus_tag="VI413_02435"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="slipin family protein"
                     /protein_id="HEY6913507.1"
                     /translation="SMTIVALSFVIGVLVAWSTKVANQWSRAIVLRLGKYHSMRGPGI
                     FFIIPIIDSIPYWIDIRVISTAFKAEKTLTKDTVPVDVDAVLFWKVIDPKKAALDVAD
                     YYSAISWASQTALRDVIGKTMLADMLEGRDKISSLLQIIIDERTEPWGINVISVEVKD
                     VLIPQGLEAAMSMQAQAERERQARVILGDSERQIAEMFNEASKSYADNPTAFHLRAMN
                     MLYEGLKTNSTIVIVPSTAVESMGLGGINGTVALTNAIQKDKIV"
BASE COUNT         1847 a         1170 c          874 g         1501 t
ORIGIN      
        1 ataatcagct atgccaattt ccgatacatt atcggttgcc aatgttggat aaacctgaaa
       61 agtacctgtt tcagtaatca aagtcaatcc gttttcctgc acctttttca aatgcatgcc
      121 acgtgccaca aaatatattt cgacttcagg atcgtccaca taacgcttag ccagcatacc
      181 accataatac cctccgactc caccgagccc tacaattact atctttattt tcataaactt
      241 tcaacttaaa aaccgagtgc aaagttacct attttgaaat gaaatttttc atcgaatttg
      301 aacaaatttt aagagttatt ccaaacaaac ttcattattt tataaaagaa acggactctc
      361 ctgatttaca ggcgagtccg ttcgtaactt tattttcaac tttgattagt gtcgtcttgc
      421 cacttcaccg tggtgagcaa gatccaaacc tacagtttgt tccaattctg taacgcgtac
      481 cggaataaat ttatttatca ccttaaatat caacacagta aatccgaaag catatacaat
      541 tgcaattaaa atagccacac attctttcaa gagcaacatt ccgttacctc caaagaaaat
      601 accatttggc acagcagagt tgatagcgct attggcaaaa aatcctaaac atatagttcc
      661 tattacgcca cccataccgt gaacgcccca aacatcgagt gcatcgtccc agcctttttt
      721 ctctttaaag tgtacagcca tgtaacaacc tatagcagca attactccaa ttatggctgc
      781 cgaatagata tcaacataac cggctgcagg tgtaattgtt gccaatccgg ccaccgcacc
      841 agtcattaaa ccaataaaag taggtttctt tttccctgta ttccattcaa taagtaacca
      901 ggtaacagcg gcaaaagagg ctgctgtatc tgtattcaaa aatgctgaaa tagtaacaga
      961 attaactgct aattcgcttc ccgcgttgaa accgtaccag ccaaaccaaa gcaaagctgt
     1021 acctatagca actaacggaa tattattagg ttcatgtttt tcgtttctac ggccaacaaa
     1081 ataaaccgaa gctaatgccg caaatccggc tgtggcatga actgtgatac caccggcaaa
     1141 gtcaaatacg ccccaatcag ccaatattcc accaccccaa accatatgta caaatggata
     1201 ataaacaaga atttgccaca aaacaagaaa gacaatgtac gatctgaacg aaacacgatt
     1261 gataaatgca cctgtaataa gtgccggagt aatgatggca aacatcattt ggtaagcaat
     1321 aaagatgtat tcggggaaac gtttatccgc cgaataaagt gttgacggcg taattccgtg
     1381 ataaaacgct ttatccagat taccaatgat tccgaaaaag tcagttccgc tgtgtaagtt
     1441 tccactgaaa caaacggaat agccaaaagc aaaccaaagc acagtgctta ttcccataga
     1501 aacaaagctc tgcatcataa tacttaaaat attcttgtta ctgcctaagc ctccataaaa
     1561 aaaggctaat cccggagtca taagcatgac gaggctcgtg gccaggatca taaaagtggt
     1621 caatcctaca tctaacataa tggtgttttt tagtttggcg caaaagtaca taaatttatt
     1681 gacatttcat acataaatgt agttttttga attgttatat acgtattttc acccaaaaca
     1741 atcaaataaa tatcattttg atacaattaa ctgatagatt aaaaaaaaga caaaactaca
     1801 ctcataacga gaaaccccta acatttttat atcaaaaaaa aatatatgct ttcaatgaga
     1861 gtgcatcttg aacggtcaaa gtcaaaactt tctattttct tataaagaac atctttttta
     1921 aacgcagccc cgatttcaac tgaaccagat aaacaccctt aggcaaactg ccaacttcaa
     1981 tattcaatgg gctttgggga aacagaaaaa tctttacggg ctttgccaac atatcaaaca
     2041 caaccaatcg ctcacatggt ccatcgaatt ccaacgtcat cgaatcacct ccagaattag
     2101 gatatatttt tgtttcattc atactagacg caacctcatt tatagccgtc ctattataaa
     2161 tgacatcatt tagtttctcc caaatctcat tgcaaaactg tggagtaata tccccaacag
     2221 tgctaccggg ttgattcccc atgcgcacaa ctaccaaacc ctgcgaagga gaaacactca
     2281 ctatttgccc gttcttaccc agacccgcaa acatgtcagc cggcgctttc ggtgcgtatg
     2341 aaccctgaaa aacatactgc aaagttggca acatatagct ttgtttccca ttcaaccacc
     2401 aaagataacc ataggattta ttaagctcct gcgaagtatt tgtcattgcc cggacataat
     2461 ctgcatcatg tagcaaagta tcagttttcc atataaactt attttgagcc aaaagcccgt
     2521 aacgagccat actgcgtgct gtactaaaat acacattatc gtaatcaagc atagcccaaa
     2581 taccagtaat acccgttttt gctttaagtt tcgattgagt gtacaggttt atatttgttg
     2641 aagtagcatt ttccaacaca ttctcgagca aggtataagg agcattatga taagcccatc
     2701 gagtacccgg ttccgcaaga tatttcagac aatccggcga agtacaatga ttatcatcca
     2761 ctccgtcatc caaaccactc gtcatagtga gttgatgacg tatagtaatt gcgttttcct
     2821 gagcaaccga acaacttgtc caacctgcac ctagatattt attcgtagga tcggctacag
     2881 ataaataacc agcttcctga gccgtcccaa ttaaaaaaga cgtgattgtt ttacctgccg
     2941 aagcccaata ccaaatacta tcagccataa aagttccgaa gtatttctcc aaaactattt
     3001 ttccatcttt caacacaatg aaagccttgg tattttcttt ttccagaaaa ttatataatg
     3061 tgtcaatttt attcatcgac caaccaagcg aaaccggtga aacagtttcc catgttgcct
     3121 gcgaacttaa aggcggataa tacaaagttt gtgaatacac tgatacgaaa ccagatagga
     3181 tcagcaatac aattaatttt cttttcatat atctttatct attgaatatc aacactaaat
     3241 caggatttat tgttgactca aatttacaac aatagtttaa tattctcaaa aagcagaacg
     3301 agagagcaaa acacaaaatt aataaattgc aaaatccaag aaacaaacat cttcaaactg
     3361 ctttgtcaat caaataatta ttagtatctt tgccccgctt taataaaatc attttataaa
     3421 taactaaaaa gctaacaaac agtatgttaa accattatga aaccgttttc attttaactc
     3481 ccgttttgtc tgatgtacag atgaaggaag cggtagaaaa attcaaatcc attttaacag
     3541 aaaatggtgc gatcattacc aatgaggaaa attggggatt acgcaaattg gcgtatccaa
     3601 tccaaaaaaa atctacaggt ttttattcgt tgcttcagtt tgatgcagag tcatcagtaa
     3661 tcgctacatt ggaaactcaa ttccgtcgcg acgaacgtgt actacgtttc ttatcgttcc
     3721 gtttggacaa atatgcgttc gaatacgctg agaaaagaaa aaatgttaaa tctaaagaag
     3781 taaaggagaa ctaaaaacat ggcagcaaac aacggagata tcagatattt gactccaccc
     3841 tcagtagatg taaaaaagaa aaaatattgt cgtttcaaaa agagcggcat ccgttacatc
     3901 gattacaaag atccagaatt tttgaaaaaa ttcttgaacg aacaaggaaa aattcttcca
     3961 cgtcgcctta ccggtacttc gttgaaattt caacgcaaag tagctcaagc agttaaaaga
     4021 gcacgccaca ttgcgttgct tccttatgta accgatatga tgaaataatt aagaaggagg
     4081 aataaagtat ggaaattata ttgaaagaag atgtaatcaa cttaggttac aaaggcgata
     4141 tcgttagcgt gaaagccggt tacggccgta acttcctgat cccaacaaag aaagctattc
     4201 ttgcaacaga atcagcaaaa aaaatgttgg cagaagactt aaaacaacgc gctcataaat
     4261 tggaacgtct gaaaaatgat gctattgaat tggcagaaaa actaaaagac gttgtattga
     4321 ctgtaggcgc aaaaacaagc acaacaggta aaattttcgg tgcagttggt cctatccaaa
     4381 ttgccgatgc ttttgaaaaa gcaggttttg ctgttgaccg caaagtaatt gtacttaaag
     4441 atgccgttaa agaaatcggt tcatacaaag ctactttgaa acttcacaaa gaagtaactg
     4501 ttgaagttgc tttcgaagtt gtagctgaat aagttttcaa ttcaaaatca agataaagcc
     4561 cggtacacac aagtgtatcg ggctttttta caaaataact ttatcacaca attttatctt
     4621 tttgaattgc attcgtcagt gccacggttc catttattcc acccagaccc atactttcaa
     4681 cagccgtact tggcacaata acaatggtgg aattggtttt cagcccttca taaagcatat
     4741 tcatggcacg caggtgaaaa gcagtcggat tatcagcgta acttttagat gcttcattaa
     4801 acatttcagc aatttgcctt tcagaatcac ccagaatcac cctagcctgg cgctcacgtt
     4861 ccgcctgagc ctgcatagac atagccgctt ccaatccctg cggaataagc acatctttaa
     4921 cttccaccga aataacgtta ataccccaag gctcagttct ttcgtcgatt ataatttgta
     4981 acaacgaact aattttgtca cgtccttcaa gcatatctgc aagcatcgtt tttccaataa
     5041 catcacggag tgcagtttgt gaagcccagc taatagcgct ataataatca gcgacatcca
     5101 aagcagcctt tttaggatca attactttcc aaaataatac ggcatctaca tctaccggaa
     5161 ccgtgtcttt ggtaagggtc ttttcagctt tgaatgctgt actgataaca cggatatcaa
     5221 tccaataagg aatactatca attattggaa taataaagaa aattccggga cctctcattg
     5281 aatgatactt acccaatcgg agcacaatgg cacgactcca ttgatttgca acttttgttg
     5341 accatgctac aagcacacca attacaaaag acaatgctac aatagtcata ct
//
LOCUS       DATDNM010000141         3296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1193580, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000141 DATDNM010000000
VERSION     DATDNM010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3296
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1193580"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3296)
                     /locus_tag="VI413_02440"
     CDS             complement(<1..>3296)
                     /locus_tag="VI413_02440"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6913508.1"
                     /translation="IDRKHIYYSPKVGNDDNPFRVYQDKDGVYWICTWGNGIFTMNYD
                     YKAKMTLQPLKLSKNSTNKVDDIVYSITQDDKYGYIWVVTFSGLNLIEKEADGSYKVL
                     DTNSYFSENTSKLFHEISKDRRGNLWIGSVGDGLYKLDFNKLSIQNYPLSEIRSTLNV
                     QSYVTRFCETNTGDVFIVINRIGLFHFNQRTGEVTRPTDNASRSITSVSAITFAQKSN
                     EIWVANEGEDLIHVFRKTGTNDLTQINIIPLSTYGYARENTITNIFEDSKGNIWIGTN
                     MGLYLKSLNSDLKLISANITNVNSIGEDSEHKIWIGTEKEGLFVFKPEMQGNKSTYKI
                     SEIDLSIKSYKSLSVQSICCKKNGDVYIGTKEGCIYYYNPKTQLASDISGLYGITDEG
                     ILDVIEDNFGFLWISTIKRIIRYNPITHAATYYSNSDGLLVSSFFKDARIKLKSGLIM
                     FGGNKGICAFNPANQNFTPKATKQLVAITDILIQNKSIFDDENSPHFDADDNRVTLKY
                     SENNLSIEFSALDYTSAGKIQYAYKLSGVDKDWNYVGNNRRFVNYANLPSGRYTFQVK
                     ASDENGIWSDKITSLDVVINPPLYRTWWAYLIYLCILAAGAYFSTRTVANRIRLRNEL
                     KISHIEKEKSEELTQIKLRYFTNISHELLTPLTIIMLQIDSLRNKSTGDSSQFEIMKD
                     NVIRLKRLIQQILVFRKTESGNMKLKIRQNDIVAFVNNICKSNFKPLVNQKKIHFSID
                     AEHESYMAYFDPDKLDKIIYNLLSNAFKHTPKDGSIAVKMSFIQRGEDTIMRLSVSDT
                     GEGIAEKDLPHIFKRFYISSSSDQSQSHGIGLALTSDLLQIHKGSIEVKSQLGEGAVF
                     TIEIPVSSGIYTAEELSEEENIPVDLPEMSEIILPENNAEIDEEVESAENSTVLIVED
                     NRELQDLIVDNFAGKYNVLRADNGVKALEVLRDNEVDLIISDVMMPEMDGLTFCKMVK
                     NDIVTSHINVLMLTAKNSTEDRIDCYNAGADAYIAKPFELSILNARTKNLIRKRKQKM
                     ETFQHNQEINISSMEYGSIDEIFLKQAVTKVEEKLSNDTFDFDQFAIDMATSKSTLHR
                     KLKSLTGLSPG"
BASE COUNT          843 a          685 c          656 g         1112 t
ORIGIN      
        1 ccgggcgaaa gtcccgtcag cgatttcagc ttgcggtgca aagtcgattt tgaagtagcc
       61 atgtcgatag caaactgatc gaaatcgaaa gtgtcgttcg agagtttttc ctctactttt
      121 gttactgcct gtttcagaaa tatttcatca atggatccat attccatcga ggaaatatta
      181 atttcctgat tgtgttggaa ggtttccatt ttttgttttc ttttcctgat aaggtttttt
      241 gtccgtgcat ttagaataga caattcaaaa ggtttggcta tataagcatc ggctccggca
      301 ttataacaat ctatgcggtc ttctgttgag tttttggccg taagcatcaa aacattgatg
      361 tggctggtga caatgtcatt ttttaccatt ttacagaatg tgagtccatc catttccggc
      421 atcatgacat cacttattat caaatccact tcattgtcgc gcaatacttc cagcgctttt
      481 accccgttat ctgcccgcaa tacgttatat tttcctgcaa aattatctac aatcaaatcc
      541 tgtaactcgc ggttgtcttc cacaatcaac acggtagaat tctctgcact ttcaacctct
      601 tcgtctattt cggcattgtt ttcagggaga attatttctg acatttcagg caaatcaaca
      661 ggaatgtttt cttcttccga caattcctcg gcagtgtaaa ttccacttga aacgggaatc
      721 tcgatggtaa atacggcgcc ttcacctaac tggcttttta cttcgatgct tcctttgtga
      781 atttgcagca aatcgctagt cagcgccagt ccgataccat ggctctggct ctggtctgac
      841 gaactgctga tataaaaacg tttgaaaata tgcggcaggt ctttttctgc aattccttcg
      901 ccggtatcgg aaacggacag acgcatgatg gtgtcttcgc cccgttggat aaaactcatt
      961 ttaactgcaa tagaaccgtc tttcggagtg tgtttaaacg cattcgaaag caggttgtaa
     1021 ataattttgt ccaacttgtc cgggtcaaaa taagccatat agctttcgtg ttccgcatca
     1081 atgctgaagt ggattttctt ctggtttaca agcggtttga aattcgattt gcaaatattg
     1141 tttacaaaag caacaatatc gttctgccgg attttcaact tcatgttacc gctttcggtt
     1201 ttacggaaaa cgagaatttg ctgaataagc cttttgaggc ggatgacgtt gtctttcata
     1261 atctcaaact gcgacgagtc gccggtactc ttgttgcgca ggctgtcaat ctgcaacatg
     1321 ataatggtca gtggtgtgag caattcatgc gagatattcg taaagtaccg gagcttaatc
     1381 tgcgtcaact cttccgattt ttctttttcg atatgcgaaa tttttagctc atttctcaaa
     1441 cggatacgat ttgcaacagt tctggtagag aagtatgcac ctgctgcaag aatgcacagg
     1501 taaataagat aggcccacca ggttctgtac agtggcggat ttataactac atccaacgac
     1561 gtgattttat cgctccagat gccgttttcg tcgctggctt ttacctggaa tgtgtatcgg
     1621 ccgcttggaa gattcgcata attcacaaat cgtctgttat ttcccacata gttccagtct
     1681 ttatctactc ccgacagttt gtaggcatat tgaatcttgc cggctgaagt gtagtcaaga
     1741 gcagagaact cgatgctcag gttgttttcc gaatacttta atgtaacgcg gttatcatcg
     1801 gcatcgaaat gcggactgtt ttcatcatca aaaatggatt tgttctgaat cagtatgtcc
     1861 gtaatggcta caagttgctt ggtagctttg ggtgtaaaat tctgattcgc cggattaaaa
     1921 gcgcagatac ctttgtttcc tccaaacatg attaatccgg attttaattt gatgcgtgca
     1981 tctttaaaga atgaactgac cagcaaacca tcgctgttcg aataatacgt ggcagcatgt
     2041 gtgatgggat tgtaacggat aattcttttt atggtggata tccataaaaa gccaaaatta
     2101 tcttcaataa catccagaat tccttcatcg gtaataccat aaagcccgct tatgtcgctt
     2161 gcaagttgcg ttttggggtt gtagtagtag atacaacctt cttttgtgcc aatatataca
     2221 tcgccgtttt tcttgcagca aatactttga acgctaagac ttttgtagct ttttatactc
     2281 aggtcgattt ctgaaatttt gtaggtgctt ttatttccct gcatttcggg tttgaataca
     2341 aatagccctt ctttctcagt tccaatccaa attttatgtt ctgaatcttc ccctatagag
     2401 tttacgttgg ttatatttgc cgaaataagt ttgagatctg aatttaatga tttcagatat
     2461 agccccatat tagtgccaat ccatatattc ccttttgagt cttcgaatat gttggtaatt
     2521 gtgttttcgc gggcatatcc gtacgtgctg agcggtatta tatttatttg tgtaaggtcg
     2581 tttgttccgg ttttcctaaa aacatgaatt aaatcttccc cttcgttggc tacccatatt
     2641 tcgttggact tttgggcaaa tgtgattgca ctgacactgg ttatcgacct tgaggcattg
     2701 tcggttgggc gtgttacttc accggttctc tggttgaagt gaaacaatcc gatccggtta
     2761 atgacgataa aaacatcgcc ggtgtttgtt tcgcaaaacc tggtgacata agattgtaca
     2821 ttgagggtgc ttctgatttc gcttaacgga taattttgta tagaaagttt gttgaaatcg
     2881 agcttataca gcccatctcc aacagagcct atccaaaggt ttccacggcg gtccttgctt
     2941 atctcatgaa ataacttgct ggtgttttcg ctgaaatacg aattagtatc gagtacctta
     3001 taagacccat cggcttcttt ctcaattaaa ttcaaaccgc tgaacgtaac tacccatata
     3061 tagccgtatt tgtcatcctg tgtgatgctg tacacaatgt cgtctacttt attcgttgag
     3121 tttttcgaca atttcagcgg ttgcaatgtc attttagcct tgtagtcata attcatggtg
     3181 aaaatcccgt ttccccacgt acaaatccag taaactccat ctttatcctg ataaacacga
     3241 aacggattat catcattgcc cacttttggg gaataataaa tatgcttccg gtcaat
//
LOCUS       DATDNM010000142         2290 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_872870, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000142 DATDNM010000000
VERSION     DATDNM010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_872870"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..927)
                     /locus_tag="VI413_02445"
     CDS             complement(<1..927)
                     /locus_tag="VI413_02445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913509.1"
                     /translation="MKLLPLTIVTFSFSILCASAQDIKLSLSRGVSTPVSQTTDSLNF
                     SPQNVTKASVYVPLFRKGWDGVVKGGNVAMTFGINLSGGLIAEQAPSATNFNAFGIAG
                     ETATPKLFVRTGEAIKKQGYNLEVAPALSFQLGDFELSPIIGLGYLKTIQQAYTIEQS
                     ISTGTYPAYAKIFNRPETTNSGFIISPKFRIAYAPGSIGLWVESDYVAGPEMVSRTYR
                     LAPAGRPGSDGLYKSDQLLAGTAVESVHKGNYGSFGLHAGISVSLEKKKKGKPAVGGY
                     DDDCDGLTTVTETYTNENGPVVQRVLKTKTQSN"
     gene            1177..>2290
                     /locus_tag="VI413_02450"
     CDS             1177..>2290
                     /locus_tag="VI413_02450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004350871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913510.1"
                     /translation="MKKIFLNYGVALFSVTMAVTSCTPTDDPAPVTTSKEVIIKTDIT
                     GTRNLVKDSTYVLEGNIFVTGTINIQAGTIIKGDKLTKGALVILQGGKINAAGTAAEP
                     IVFTSRMAPGLRAAGDWGGVILVGKAPVNQSNPTIEGLTKSVTYGGGTNPADNSGTLQ
                     YVRIEFAGIALQPDNEINGLTLCAVGSGTTIDHIQVSYSGDDSYEWFGGNVNAKYLIA
                     YCGLDDEFDTDFGYSGHVQFALGVRNSRVADVSTSNGFESDNDASGSVGQPKTKAVFS
                     NVTLIGPWKTPADKNISAMFGAGMHIRRNSSLSAFNSVFAGWNTGLLLDGTSTYANAN
                     DSLTLCIQNCALIGTKVAAVKGAGITDAQALAFYNTT"
BASE COUNT          665 a          517 c          491 g          617 t
ORIGIN      
        1 gttgctttgg gtttttgttt ttaaaacacg ttgcactacc ggcccatttt cgttggtata
       61 agtttctgta acagtagtta gcccatcgca gtcatcgtca tatccaccca cagcaggttt
      121 tcctttcttc tttttttcga gtgataccga aatgccggca tgaaggccaa acgacccata
      181 attgccttta tgaacagatt caacggctgt gccggctaac agttgatcgg atttatacaa
      241 cccatcggaa ccgggacgtc cggcaggcgc caaccgatac gtgcggctaa ccatttcagg
      301 tccagctaca taatcggatt ccacccacaa ccctatagat ccgggagcgt aggcaatcct
      361 gaacttgggg cttattataa acccgctatt agttgtttcc gggcggttga aaattttggc
      421 atacgcagga taggtgccag tggaaatgct ttgctcaatg gtgtacgcct gctgaatggt
      481 tttcagatat cccaggccaa taataggcga taactcaaaa tcacccaact gaaaactaag
      541 cgccggcgct acctccaggt tatagccctg ttttttaatt gcttctcctg tgcggacaaa
      601 cagcttaggt gttgcagttt cgccggcaat gccaaacgca ttgaaattag ttgcggaagg
      661 tgcctgctct gcaataaggc ctccactcaa atttatcccg aaagtcatgg caacattacc
      721 acccttaact acaccatccc accccttccg gaaaagcgga acataaaccg atgctttagt
      781 tacattctga gggctaaagt tcaatgaatc ggtagtttga ctaaccggcg tgcttactcc
      841 ccggctaagc gataacttta tatcctgtgc tgacgcacat aaaatactga atgagaatgt
      901 gactatggtt aacggtaaga gcttcataca atccggattt aaataaatat ttaatagcaa
      961 caatattgta atcataacaa ataatgttta ataaatgttt gaatacgttt aaataatgtc
     1021 aaagcgaaca atacgtatca gcaaaaggga atgaaataac ttcgtcacag catttacata
     1081 caaccataat cgtttcggaa caaacctgta acaatgcgcc cctacttttg cgtcatgatt
     1141 tatttgaaaa aacaaacaaa acaaaattat tcgacaatga aaaagatttt cttaaactac
     1201 ggagtagctc tatttagtgt aacaatggct gtaacatcgt gtacaccaac tgatgatccg
     1261 gctccggtca ctacttcaaa agaagttatt atcaaaaccg acattaccgg aacccgcaac
     1321 cttgtaaaag attcaactta cgtcctggaa ggcaatattt ttgtaaccgg aaccatcaac
     1381 attcaggcag gaacaattat taaaggtgat aaactaacaa aaggagctct ggtgattctt
     1441 cagggcggta aaattaatgc tgccggtaca gctgcagaac caatcgtatt tacgtcacgt
     1501 atggctccgg gacttcgtgc agccggagac tggggtggag ttattctcgt aggaaaagct
     1561 ccggttaacc aatcgaaccc gaccatcgaa gggttgacaa aatctgtaac gtatggaggc
     1621 ggaacaaatc cggctgataa ctcgggaacc cttcaatatg ttcgtatcga gtttgccggt
     1681 attgctctgc aacccgacaa tgaaattaat gggcttactt tgtgtgctgt tggtagcgga
     1741 acaacaatcg accacattca ggtttcatac agcggtgatg attcgtacga atggtttggc
     1801 ggaaacgtaa atgccaaata cctgattgct tattgcgggt tggatgacga atttgatacc
     1861 gatttcggat attccggaca cgttcagttt gcgttgggtg ttcgtaactc acgcgttgcc
     1921 gacgtatcta cttcgaatgg tttcgaatca gataacgatg cctccggttc tgttgggcaa
     1981 ccaaaaacaa aagccgtatt cagtaacgtt accttaatcg gcccctggaa aactccggct
     2041 gataaaaaca ttagtgccat gtttggtgca ggaatgcata tccgccgcaa cagctctttg
     2101 tctgctttca actcggtttt tgcaggctgg aacaccggtt tattgcttga cggaacatct
     2161 acctatgcga atgcaaacga ttcattgaca ttgtgtattc aaaactgcgc gcttattggc
     2221 acaaaagtag cggcagtaaa aggtgcaggt ataaccgatg ctcaggcgtt ggctttctac
     2281 aacacaactg
//
LOCUS       DATDNM010000143         4841 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_766524, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000143 DATDNM010000000
VERSION     DATDNM010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4841
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_766524"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1665)
                     /locus_tag="VI413_02455"
     CDS             complement(<1..1665)
                     /locus_tag="VI413_02455"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6913511.1"
                     /translation="MKKNSNNIFFLVFVSLLMTISATAQTKMIVHGKVISGTDKQPLI
                     GVSVAEYDKSNRILNGAVTDLDGNYTLKISGGVGTTITYSYIGYKKTTKTVGSSTVMD
                     VVMEDASHTIKEVAVTAKKQVNTGFANISERDLTYAVSKIDSKDLEGLQVASIDEALQ
                     GRMSGVDIVANGGEPGAGMSIRIRGTTSINNGSDPLIVVDGIPFDTNIGSDFDFATAD
                     QENYAQLLNISPADIQDITVLKDAAACALYGNRGANGVLLIKTKRGGVSKPMVSYTFK
                     GSLNTPATPIKTLSGDQYTTLILDEAQNSGTPLNTISYPEFMYDPTNPYYYYNYGQNT
                     DWYSALTKNGYTQDHSLSISGGGEKAQYRTSLGYYNQLGTVIGQSYSRVTASLNLDYN
                     VSDNLKFQVNLSYTHGDQNKNYTTDLLNSAYTKMPNQSIYEFNTNGEMTPNYFSPVLT
                     PQGSFLSFDYDKASKGIYNPVAMANSGYWKVKSERILPKFNIQYWVIPEVLKYQADLA
                     FDINTSKDNRFLPQIATGRLWPEINVNRTSDIASESFIVQTFNKLIY"
     gene            complement(1692..4115)
                     /locus_tag="VI413_02460"
     CDS             complement(1692..4115)
                     /locus_tag="VI413_02460"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6913512.1"
                     /translation="MRKLLRIPVLLSLILLLLVRCANDKDAYFERPGWLEPPIYTVLE
                     KQGKFANYLKCVDRTLYATSLKSGGLYTVFAPNDEAFTKYLSTKGYASVSDIPDSLVN
                     QIVSYSIVYNNYSFDHLSDVLSGGWDTLSSIRKKTAYYKSIYQMNYQGSNIWIYDMPG
                     ASASIGTVVEQNFKYIPLYLRKVFERNRTSAQAASDYGMFYSSPYTGSNVQSASIITK
                     DMVAENGVAHEVDQVLEPLPNLEKLLDDPDYSDFKALINKKGNTGEPYFITYQYNDLL
                     TKYFSNALPDQNISSVYFKYYSGLPFTLSGERYGTNPKQAEQGGFTMFAPNNAAINKF
                     YEEKLKDYYPNGIQTVSKDILGYFINAQMIDELVWPGDFKGSMNSQGEFLNGKGNRGA
                     EFDKSKYSKIAPASNGFFYGSTDYIKSRYFETVFTEILLNPTYNLLNTAFTEYFNATL
                     KEELLKCELNGYTQENYTVLLPSDELLQADGFSWAWISGSNKYGFLNSHSGSALGNFD
                     VATRIQRLVRSHIFKRLKNDQVNCAITNFTTDASFATAYGGYSYAVNEYGDMIRYKDG
                     KIQMLGNFDENDFVTATPYKTFSNGQVFKIDKMLQYSRRNTYPNSVEGYSSQDLYTYI
                     LNMASGTQNTNVALFKNYLAACLKGDASNELAGLSADMVLTIFMPTNTAINKAIANGD
                     LPKLTDVTSDAASRIKATKFVLYHMIKGKEFVDDGLTYIMPNKEVITEETWPTVLKDV
                     VDNTYLAIRKDASGNLVVSTQAVSTGKNLSTSIKSATVTRGIKRSNYFGAKAVLHEIN
                     DYLVYGKVK"
     gene            4608..>4841
                     /locus_tag="VI413_02465"
     CDS             4608..>4841
                     /locus_tag="VI413_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009435502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase N-terminal domain-containing
                     protein"
                     /protein_id="HEY6913513.1"
                     /translation="MKKHILGFTLLLCLTNFCLVHAQSAFRFWYNRPAEFFEETLVLG
                     NGKTGATVFGGATSDKIYLNDATLWTGGPVNANM"
BASE COUNT         1431 a          893 c          901 g         1616 t
ORIGIN      
        1 atagatcagt ttgttgaatg tctgaactat aaatgattct gatgcaatat cacttgttct
       61 gttcacattt atctctggcc ataaacgtcc ggttgcaatt tgaggtagaa aacggttatc
      121 tttagaagta ttgatgtcga aagctaagtc agcctgatat tttaaaactt ctggaataac
      181 ccagtattga atattaaatt taggtaatat gcgttcgctt tttactttcc agtaaccgga
      241 atttgccata gctaccgggt tatatattcc tttcgaggct ttatcgtaat caaatgacaa
      301 gaaagaccct tgaggagtta ataccggcga gaagtaattt ggcgtcattt caccatttgt
      361 attgaactca taaatagatt ggtttggcat ttttgtatag gccgaattca acaaatctgt
      421 ggtgtaattc ttattctggt caccatgggt gtacgaaagg tttacctgaa atttcagatt
      481 atcggacaca ttataatcaa ggttcaacga tgctgtaaca cgcgaatatg actggccaat
      541 aactgttcct aactgattgt aataacccag tgaagtacgg tattgggctt tttcgccacc
      601 acccgaaata gaaagtgaat gatcctgtgt atatccgttt tttgttaatg cactatacca
      661 gtctgtattt tgtccgtagt tataatagta atacgggtta gttgggtcgt acataaattc
      721 aggataagaa attgtattca gcggcgtacc tgaattctgg gcctcatcaa gaattaaagt
      781 tgtgtactga tctccggata atgttttaat tggggttgca ggtgtattca atgacccttt
      841 aaaagtatat gaaaccattg gtttgctaac tccaccacgt tttgttttaa tcaacaatac
      901 gccatttgct ccacggttgc catacaaagc acaggcagca gcatctttca atacggtgat
      961 gtcctgaata tctgcaggtg aaatattcaa taactgagca tagttttcct gatcagcagt
     1021 tgcaaagtca aagtcggatc caatgttagt atcaaaagga ataccatcga ctacaataag
     1081 tgggtcggaa ccattgttga tggaagtagt accacggata cggatggaca tgcctgcacc
     1141 cggctcacca ccattggcta caatatcaac ccccgacata cgcccttgta aagcttcgtc
     1201 gatagaagca acctgaagtc cttccaggtc ttttgaatca attttactaa ctgcataggt
     1261 caaatcccgt tcagagatat tagcaaaacc ggtatttacc tgttttttgg cggtaacggc
     1321 aacttcttta atggtatggg aagcatcttc cattacaaca tccataacgg tggaagatcc
     1381 aactgttttt gttgtttttt tatagccaat atatgagtag gtaattgttg ttccaactcc
     1441 accgcttatt ttcagggtgt agttaccatc caaatcggta acagccccat tcaatatacg
     1501 gttgctttta tcatattcag ctactgaaac acctataagc ggttgtttat ctgttcctga
     1561 tattacttta ccatgaacaa tcattttagt ttgagctgtc gcggaaatgg tcatcagcaa
     1621 cgacacaaag accagaaaaa atatattatt actattcttt ttcatattaa tctgtttaat
     1681 tcaatttacc gttacttaac cttgccgtag acaagataat cgttaatttc gtgtagtact
     1741 gcttttgctc caaaataatt actacgttta attcctctgg ttactgtcgc agattttatg
     1801 gaagtggaaa ggtttttacc ggtactcaca gcttgggtag acaccactaa atttccactt
     1861 gcatctttgc gaattgctaa ataagtattg tcaactacat ctttcaatac ggttggccag
     1921 gtttcttcag taataacttc tttattcggc ataatataag tgagcccatc gtccacaaat
     1981 tcttttccct taatcatatg ataaagaacg aacttagttg ctttaatacg agatgcagca
     2041 tcacttgtaa cgtcagtcag tttcggtaag tctccatttg cgattgcttt atttatagct
     2101 gtatttgtag gcataaatat cgtcagtacc atatctgccg atagacctgc taactcgttg
     2161 cttgcatcgc ctttaaggca agccgctaaa tagtttttga aaagagctac attggtattt
     2221 tgagttcccg atgccatatt taggatataa gtatataaat cttgggatga atatccctcc
     2281 actgaatttg gataggtgtt tctccgtgaa tactgcagca ttttatcaat tttgaaaacc
     2341 tgaccatttg agaaagtttt gtaaggagta gcagttacaa aatcattttc atcaaagtta
     2401 ccaagcattt gaattttgcc atctttgtag cgaatcatat caccatattc gtttacagcg
     2461 tatgaataac caccgtaagc agttgcaaat gaggcatcag ttgtgaagtt tgtgatagcg
     2521 cagtttacct gatcgttttt caggcgtttg aaaatatgcg accgaacaag gcgttgaatg
     2581 cgggttgcca catcaaagtt acccagtgca cttcctgaat gagagttcaa aaatccatat
     2641 ttgtttgaac cggatatcca tgcccagcta aatccatcag cttgcagtaa ttcgtcagaa
     2701 ggtaacaaaa cagtgtagtt ctcctgtgta taaccgttaa gctcacattt gagtaattct
     2761 tcttttaatg ttgcattaaa atattctgta aaagcggtgt tcaataaatt gtaggtcgga
     2821 ttgagtagaa tctccgtgaa gacagtttca aaataacggc ttttaatgta atcggttgag
     2881 ccgtaaaaga aaccattact tgccggagct attttagagt atttagattt atcaaactca
     2941 gcacctctgt taccttttcc attgaggaat tcgccctgtg agttcatact tcctttaaaa
     3001 tctccgggcc aaactaattc atcaatcatt tgagcattaa taaaataacc cagaatatct
     3061 ttcgacactg tttgaattcc gtttggatag tagtccttta gtttttcttc gtagaattta
     3121 tttattgcag cattatttgg tgcaaacatg gtaaatccac cttgctctgc ttgctttggg
     3181 tttgttccgt aacgttcacc gctaagtgtg aagggaagtc cgctataata cttgaaataa
     3241 accgaactta tgttctggtc aggcagcgca ttgctaaagt attttgtaag caaatcatta
     3301 tactgatatg taataaaata tggttctccg gtatttcctt ttttatttat taatgcttta
     3361 aagtcagaat aatccggatc gtccagtaat ttttcaagat ttggaagcgg ttccaatacc
     3421 tgatcaactt catgggcaac gccattttcg gcaaccatat ctttggtaat gatggaggcg
     3481 ctttgaacgt tacttccggt gtaaggtgat gaataaaaca ttccgtaatc ggaagccgct
     3541 tgtgcagatg ttctgttgcg ttcaaatact ttccttaaat agaggggaat atatttgaag
     3601 ttttgctcaa ccacagttcc aattgatgct gatgcccccg gcatatcata tatccagatg
     3661 ttactgccct gatagttcat ctggtaaatt gacttataat aagcagtttt tttacgaata
     3721 ctacttagcg tatcccaacc accgctgagc acgtcggata agtggtcaaa cgaataatta
     3781 ttataaacta tcgaataact cacaatttgg ttgactagtg aatcgggaat gtcagatacg
     3841 ctagcgtatc ctttggttga gagatattta gtaaatgctt cgtcgttcgg agcaaaaacg
     3901 gtgtaaagtc caccagattt taatgacgtc gcataaagtg ttctgtcaac acattttaag
     3961 tagttggcaa attttccctg tttttctaaa acagtgtaga ttgggggttc taaccatcct
     4021 ggtcgttcga agtatgcatc tttatcattt gcacatcgga caagtagcag gagaatgagc
     4081 gataatagaa ctggaattct caataatttt ctcatgaaat ttattaattt taaggtaatt
     4141 gattatgctt tacagcagaa aattagatta gcaattaaac caatgcgaaa ttacaataac
     4201 accctaacct gaaactgttt ttttgtacaa atgcatagaa attcatacaa gtaaaaatac
     4261 agacaataat taaatgttag ttaacgtttg gggcttggca ataaggtttt ctttgttatt
     4321 ttacatgtaa ttaaacaata atttatataa taaggttttg aaattctacc agttataagg
     4381 tgctttaatt ctaacctttt attggctttt tgctctgttt ttatacatgc aaatttgtac
     4441 ataatacatg caaatacaaa ttatccccct tattaaacga tttgaaccct gaattgtcac
     4501 ctttgattaa catttttctt ggcgggattt tgtaattttg ttggcgtaaa ggaataaatt
     4561 ctttttatat gttcataaaa agttcattat ctataaatca tttaatcatg aaaaaacaca
     4621 ttctcgggtt cacattacta ttgtgtctta ctaacttttg tttagtacat gctcaatcag
     4681 cctttagatt ctggtataat cgtccggcag agttttttga agaaactctg gtattaggca
     4741 atggcaaaac aggggctaca gtatttggag gtgcaacaag cgataagatt tacctgaatg
     4801 atgccacgct ctggaccgga ggcccggtta atgccaatat g
//
LOCUS       DATDNM010000144         4298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2049009, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000144 DATDNM010000000
VERSION     DATDNM010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4298
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2049009"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..1709
                     /gene="gltX"
                     /locus_tag="VI413_02470"
     CDS             189..1709
                     /gene="gltX"
                     /locus_tag="VI413_02470"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEY6913514.1"
                     /translation="MRKVRVRFAPSPTGPLHIGGVRTALYNYLFAKKHGGDMLLRIED
                     TDSARFVPGAEDYIVEALNWLGIGIDEGIGAKSEGKHAPYRQSERKSIYRKYVDQLLE
                     GGLAYVAFDTPAELDAKRAEIANFQYDASTRELMTNSLTLPADEVNTRIEKGEQYVVR
                     IKIEPNEDIKVQDLIRGEVVINSSIIDDKVLFKSSDQLPTYHMANVVDDYLMEISHVI
                     RGEEWLPSAPLHVLLYRYLGWTDAMPQFAHLPLLLKPDGNGKLSKRDGDRLGFPVFPL
                     NWKDPKTGETSSGYREAGYFPEAVVNFLSLLGWNSGTEQEIFSMQELIDLFSLDRVSK
                     SGAKFDYEKGKWFNHKYLQQKDNDEIADIFQHMLVEKDIIEDSAKVTKIVSLVKERAN
                     FVNELWSQSSFFFVAPTEYDAKTIQKRWKAETPVQLTELIQVLNAINEFTAENTENIV
                     KEWITSKEYNLGGIMNAFRLSVVGEPKGPHMFDIIEVIGKDETIQRLQRAINHINI"
     gene            1717..2502
                     /locus_tag="VI413_02475"
     CDS             1717..2502
                     /locus_tag="VI413_02475"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6913515.1"
                     /translation="MQKRHLDPLQYINEQILSTQKYIVPFIQQVKAIESGINVLEIGC
                     GEGGNLKPFLDLGCQCTGVDFSTPKIEKGKVFYATQPLAKNIKLISEDIYKTNEFHSQ
                     FDIIIVRDVIEHIHDQDKFLGLMKDLLAPNGVAFFAFPPWQNPFGGHQQICKSKFLSI
                     LPYYHLLPKAIYRAILKMFGESDGKIGSLLEIKDTGISLERFEKLVAKNDYEQLSKTL
                     YFINPNYEVKFGLKPRKLTFIFAQIPYLRNFLSTCGYYLIARK"
     gene            2513..3805
                     /locus_tag="VI413_02480"
     CDS             2513..3805
                     /locus_tag="VI413_02480"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6913516.1"
                     /translation="MKKVLIITYYWIPSGGAGVQRWVKFTKYLSDFGYEPIIYTPENP
                     EFPSIDTSFEKDVPSDIQIIKTPIWEPYNVYRNLTGKKNQAINAGFISENKKQGWKDK
                     LSIWIRGNFLIPDPRRFWIKPSVSFLTDYLQKNPVDAIITTGPPHSMHLIGMGLKTNF
                     PLLPWIADFRDPWTNIDFYKDLNLSWISDKIHHRLEKKVIQKADSIIVVSNGMKDEYE
                     LLKPKHIEIISNGFDESDVQETTIELDNKFSISHIGTLNAARNPKTVWKVLSEICAEN
                     NEFKSDLQIQLVGKVDFSVLEDIKNLGLSNNLLKIDYLSHSEAIAKQQSSQVLMLLIN
                     NSGNAKGILTGKFYEYLAAKRPILAIGPTDGDAALVLSETRAGKMVDFADEKETKLVI
                     LEYYSHFKASSLYVEASAIERFSRRSLTGELAKLLSSL"
     gene            3802..>4298
                     /locus_tag="VI413_02485"
     CDS             3802..>4298
                     /locus_tag="VI413_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HEY6913517.1"
                     /translation="MRKIITIVGARPQFVKAATLSRQFQLLGVQELIVHTGQHFDANM
                     SQVFFEEMEIPKPAYNLEIHGLTHGAMTGRMLEGIEEILLKEKPDGVLVYGDTNSTLA
                     GAIAASKLQIPLIHVEAGLRSYNMAMPEEINRILTDRISNVLFCPTDTAVNNLKREGF
                     ENMPV"
BASE COUNT         1418 a          807 c          847 g         1226 t
ORIGIN      
        1 aaacgtgtta cattgaatga ggaataagaa ttcaataaat atcatagaaa cacctcccga
       61 taagaatcgg gaggtgtttt tgtttccggc tatatgccta tatctcgaca aaatgtgtta
      121 tttttgcaga ttagaaccga ataacatcgt gatttcaatt gcccgataaa atttatcaat
      181 ttaaaagaat gagaaaagtc agagtgcgct ttgcacccag tccaaccgga cccttacata
      241 tcggcggagt acgcaccgca ttatacaatt acctttttgc aaaaaaacat ggtggagata
      301 tgttgctccg cattgaagat accgattctg cccgctttgt gccgggagca gaagattata
      361 tagtagaagc actcaactgg cttggaatag gcattgatga aggaatcggg gcaaaaagcg
      421 aaggtaaaca cgctccatat cgccaaagtg aacgaaaatc gatttaccgc aaatatgttg
      481 accaattgct cgaaggcggc ctggcttatg tagcttttga cacacctgcc gaattagatg
      541 caaaacgtgc tgaaatagca aatttccaat acgatgcaag tacccgtgaa ttaatgacta
      601 attctctgac tttgccggct gatgaagtga atactcgcat tgaaaaaggc gaacaatatg
      661 tggttcgtat caaaatcgaa ccaaatgaag atataaaagt acaggatttg attcgtggcg
      721 aagtagttat caactcttcg attattgatg acaaggtgct gttcaaatcg tctgaccaat
      781 tacctaccta tcacatggct aatgtggttg acgattatct gatggaaatc tctcacgtaa
      841 ttcgtggtga agagtggttg ccatctgccc cactccacgt gttgctttac cgttatttgg
      901 gttggactga cgcaatgcct cagtttgctc atcttccact attactcaaa cccgacggaa
      961 acggaaaact cagtaaacgt gacggtgacc gtcttggatt tccggtattt ccacttaact
     1021 ggaaagatcc gaaaaccggt gaaacatcat ctggctatcg cgaagccggt tacttccccg
     1081 aggctgtagt taatttctta tcgttattgg gttggaattc cggcactgaa caggaaattt
     1141 tttctatgca ggagttaatt gatttgttct cgctcgaccg cgttagtaaa agcggtgcaa
     1201 aatttgacta cgaaaaaggc aaatggttta atcacaaata ccttcaacaa aaagacaacg
     1261 atgaaatagc tgatattttc cagcatatgt tggttgaaaa agatataatc gaagattctg
     1321 ccaaagtgac aaaaatagta tctttagtta aagaaagagc aaactttgta aatgaacttt
     1381 ggagccaatc cagtttcttc tttgttgcac ccactgaata cgatgcaaaa actattcaaa
     1441 aacgctggaa agctgaaaca cctgtccaac tgactgaatt aattcaggta ttaaacgcaa
     1501 ttaacgagtt caccgcagag aataccgaaa acatcgttaa agaatggatt acttcaaaag
     1561 aatacaactt gggtggaatt atgaatgcat tccgtctgtc ggttgttggt gaaccaaaag
     1621 gtccacacat gtttgatatt attgaagtga ttggcaaaga tgaaacaatt caacgcctcc
     1681 aacgcgctat taatcatata aatatttagt attaaaatgc aaaagcgcca tttagatcca
     1741 ctacaatata taaacgaaca gattctcagc acacaaaaat atattgtacc gtttattcaa
     1801 caagttaaag ctattgaatc tggaattaat gtattggaaa ttggttgtgg tgaaggtggc
     1861 aatctgaaac cgtttttaga tttaggttgc cagtgtaccg gcgtcgattt tagcactccg
     1921 aaaattgaaa aaggcaaagt gttttacgca actcagccat tagcaaaaaa cataaaatta
     1981 atcagtgaag atatttacaa aaccaacgaa ttccattcgc aatttgacat tatcattgtc
     2041 cgcgatgtaa ttgaacatat tcacgaccaa gataagtttc tgggattgat gaaggattta
     2101 ttggcaccta atggagttgc atttttcgct tttccaccct ggcaaaatcc ttttggcggg
     2161 catcaacaaa tttgtaaaag caaattttta tcaattctgc cctactatca tttacttcca
     2221 aaagctatct accgagctat tctgaaaatg tttggcgaga gtgacggtaa aattggcagt
     2281 ttgctcgaaa tcaaagatac aggaatcagt ctggaacgtt ttgaaaaatt ggttgctaaa
     2341 aatgactatg agcaattatc aaaaacattg tattttataa atccaaacta cgaagtgaaa
     2401 tttggcttaa aaccacgcaa acttacattt atttttgctc aaatcccata tctcagaaac
     2461 ttcctttcca cttgtgggta ctatttaatt gcaagaaaat aagcttatta gaatgaaaaa
     2521 ggtactgatt attacatatt actggattcc tagtggtggt gcaggcgtgc aacggtgggt
     2581 aaaattcacc aaatacctta gtgattttgg atatgaacct ataatttata ctcccgaaaa
     2641 tcctgaattt ccatcaattg acacttcatt cgagaaagat gtaccttcag atatccagat
     2701 aatcaaaaca ccaatctggg agccgtacaa tgtatataga aatctgactg gaaagaaaaa
     2761 ccaagctatc aatgccggtt ttatttctga gaacaaaaaa caaggctgga aagataagct
     2821 ttcgatttgg attcgcggca actttttgat tcctgacccg cgacgctttt ggataaaacc
     2881 atctgtcagt tttttaactg actatttgca gaagaatcct gttgatgcga ttattacaac
     2941 tggcccccca cattcaatgc atctcattgg aatgggttta aaaacaaatt ttccattatt
     3001 gccttggata gctgacttcc gcgatccatg gaccaacatt gatttttata aagatttgaa
     3061 tctaagctgg atttcagaca aaattcatca ccgattagaa aagaaagtta ttcaaaaagc
     3121 agatagcatt attgttgtat ccaatggaat gaaagatgaa tatgagctgc taaagcccaa
     3181 acatatcgag attatttcaa acggcttcga tgaatcagat gttcaagaaa ctacaattga
     3241 gttagataat aaattttcaa tttcgcatat tggcacgctc aatgcggctc gcaatccaaa
     3301 aaccgtttgg aaagtattga gtgaaatatg tgctgaaaat aacgagttca aatctgattt
     3361 acaaatacaa ctagttggca aagttgattt ttcagtgttg gaggacataa aaaatctagg
     3421 attgtcaaat aacctattga aaatagatta tctttctcac agcgaagcaa ttgctaaaca
     3481 acagtcatcg caggtcttaa tgctgctaat caataattca ggtaacgcta aaggaattct
     3541 gacaggtaaa ttctacgaat acctggctgc aaaacgtcct attctggcta taggaccaac
     3601 agatggcgac gcagccctgg tactttctga aaccagagcc ggcaaaatgg ttgattttgc
     3661 agatgagaaa gagactaaac tggtaatttt agaatattac agccatttca aagctagttc
     3721 attgtatgtt gaagcctcag ctattgagcg tttttcacgc cgttcgctca cgggtgaact
     3781 ggcaaagtta ttaagcagtt tatgagaaag attataacta tagtaggagc acgtccacaa
     3841 tttgtaaaag cagccactct gagccgtcag tttcaactgt tgggagttca ggaattgatt
     3901 gttcacactg gtcagcattt tgatgccaat atgtcgcaag tattttttga ggaaatggaa
     3961 attccaaaac cggcttacaa tctggagatt catggtttga ctcatggcgc catgacaggc
     4021 cgaatgctgg agggaattga agaaattctc ctgaaagaaa aacctgacgg agtacttgtg
     4081 tatggcgata caaattcaac attggcgggt gcgatagcag cttcaaaact acaaatacca
     4141 cttattcacg ttgaagctgg tctacgctct tataacatgg ctatgccgga agaaattaat
     4201 cggatattga ctgacaggat ttcaaacgta cttttttgtc ctaccgacac tgctgtaaat
     4261 aacctcaaac gagaaggctt tgagaacatg ccggttca
//
LOCUS       DATDNM010000145         4517 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1514541, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000145 DATDNM010000000
VERSION     DATDNM010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4517
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1514541"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1264)
                     /locus_tag="VI413_02490"
     CDS             complement(<1..1264)
                     /locus_tag="VI413_02490"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913518.1"
                     /translation="MKNIHIIAILSVILSFAACSEDFLDKRNPNEMTTTDFWKTGDDL
                     QKGIDAAYRPLRFNGQYSRWLHILYVSRSDEGYSESPNPYFQSYSNFLTKNYNDDSAE
                     ALLYTWLDLYKGIFWANQVIDNAKKITMDEDLKKRIVGEAYFLRGLHFFNLAAIYGRG
                     PLTLTAFAGESKPQVVEQDGLYQQSKLDFQEAIKDLPNSYVELKNLGRATQGAARGML
                     IKVLMQQKNWADAEVECRALFDMKNSGGQPLYSLIANYKDNFSQVNENNSESVFEVQF
                     APGVQSGIEVGCNRAKFMGIAADSLSWADAYPRKSLYNEFLLEKTTDNQVDPRLKSTL
                     AYYDPANPAERFYGRTWDKLKIADHNMIYWKKYTNYETAVLEDYSSGINFRVVRLADI
                     YLLYAEVLNELNRTAESYEYINKVRRRVN"
     gene            complement(1306..4389)
                     /locus_tag="VI413_02495"
     CDS             complement(1306..4389)
                     /locus_tag="VI413_02495"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6913519.1"
                     /translation="MSKNTKFKSKSPLALNLMSIGLFLFFLFQASAVNAQQNSSQTGH
                     HVDGTVTSESGESLIGVSILVEGSKVGAITDMDGKFSINTPSATATLTFSYLGYISQS
                     VRIAGKSVVNVVLKEDLKQLDEIVVVAYGTQRKKDLTGAVSAVDVNQMKKMQSPNIGQ
                     ALQGQVSGVSVSTSGEPGSGADIRIRGVGSFSNVGPLYVVDGLILTGSQREFNVNDIE
                     SMQVLKDASATSLYGARGANGVIIITTKKGKNGAPRIDVSANYGVQTITHRIEMMNSL
                     EFLRVNRQAYENAGMEWPGEPTQGQVLTNTDWQKEFFQTGNTQDYNVTLSGGSQDGNY
                     LVSGNLFSQDGVVKGPRHDRYALRVNTNMKKGFFTFGENMLFSRTETKPMIGVPFIDL
                     CRMPPIIPVRDANGKYGTGSSLYQTYGTNPIGMQETRDFLQTSNRVMGNAFVEMEFIK
                     GLKFKSNLGIEYHTWHDREETTFDQIRYLDVSKYSNQLTERRGDFTNLISENTLTYTK
                     KINKHFFDGLLGYTAEDRKWKQNELTVHDLVPGFWVINAGKTDMEMYGTDDNRSMTSI
                     LGRINYAYDDKYLVQANIRRDGSSAFGVNYRYGYFPSASLGWRISQEKFMEKSRSWLD
                     DLKLRASYGTLGDQQTIGSYDYATYISTGEGGVFGGDQILNVGAIQKGRANPNLRWES
                     KTTLNLGVDFTLFKNKVYGTIEYFNADSKDILVKLPTSWTDGTDITPWTNFGEVVNKG
                     FELTLGYREQQNKFKYNVGLNLTALSNKVLKLGQSYREGGLNGVNRTEEGRSVGDFYL
                     VRTAGIFQSWDEVYAYTKTTTDSETGESTTKMIQPNAKPGDIRYKDSNDDGQINKDDR
                     EFVGSPFPALELGLNFSCEYRNFDFTMFVTGVFGNKIYNNAKYWLERMDETANLPKNL
                     VPWTEANHSTTTPRAVIGPNDNTMSYSDRWIENGDYVRLKNLQIGYTFPKSLLAKTKL
                     IESCRIFAGAQNLLTLTKYSGFDPEISGGDILGKGNDDGHFPPVRSMNLGLQISF"
BASE COUNT         1256 a          987 c          844 g         1430 t
ORIGIN      
        1 tatttaccct gcggcgaact ttgttgatat attcgtacga ttcggcagta cggttcagtt
       61 cgttcagcac ttcggcatac agcaaataaa tatcggccag gcgaactacc ctgaaattaa
      121 ttccggaact ataatcctca agtactgctg tttcgtagtt ggtgtatttt ttccagtaaa
      181 tcatattatg atccgctatt ttcaacttat cccaggttct tccatagaat ctttctgcag
      241 gattggctgg atcataatag gctagtgtac ttttcaaccg cggatctacc tggttatctg
      301 ttgttttttc caataaaaac tcattgtaaa gcgatttgcg cggatatgca tcggcccacg
      361 aaagactatc agcagcaata cccatgaatt tggcacggtt acatcccact tctattcctg
      421 attgaacccc gggagcaaat tgaacttcga aaaccgattc ggagttgttc tcattcactt
      481 gcgagaaatt gtccttataa tttgcaatca gcgaatacag cggttgcccg ccggagtttt
      541 tcatatcaaa caaagcccgg cattcaactt cggcatctgc ccaattcttt tgttgcataa
      601 gcaccttaat aagcattcca cgtgcggcac cttgtgtggc acgaccgagg tttttaagct
      661 ctacatacga gtttggcaga tctttaatag cttcctgaaa atcaagtttt gattgttgat
      721 aaagtccatc ctgttccact acctgaggtt tactttctcc cgcaaaagca gtaagtgtta
      781 acggtcctcg accataaata gctgccagat taaagaaatg caggccacgc agaaaataag
      841 cttcacctac aattcgtttt ttcaaatcct catccatggt tatttttttt gcattatcaa
      901 taacctggtt ggcccaaaaa attcctttgt acaagtccag ccaggtataa agcagtgctt
      961 cggctgagtc atcattgtaa ttctttgtca aaaagttaga atacgactga aaatatggat
     1021 ttggcgattc gctgtatcct tcatcggaac gtgaaacata aagtatatgc aaccaacgtg
     1081 aatattggcc gttgaatctt aacggacggt aagccgcatc aattcccttt tgcaaatcat
     1141 ctcccgtttt ccagaagtcg gttgttgtca tctcgttcgg attacgtttg tccagaaaat
     1201 cctccgagca agccgcaaag cttagtatta cgctcaaaat ggctattata tgaatatttt
     1261 tcattttttg tatcttatta tttatcggtt atacaatctt taattttaga atgaaatctg
     1321 aagtccgaga ttcatacttc ttactggtgg aaagtgacca tcatcatttc ctttacccaa
     1381 aatatcgcca cctgaaattt caggatcgaa accggaatat ttagtcaatg tcaagaggtt
     1441 ttgggctcct gcgaaaatac ggcaactttc aatcaatttg gtttttgcaa gtaatgattt
     1501 agggaaagta taacctattt gaaggttttt caagcgtaca taatcaccgt tttcaatcca
     1561 gcggtcggaa tatgacatgg tgttgtcgtt tggtccgata acagctcttg gagttgttgt
     1621 tgaatgatta gcttcggtcc aggggaccag gtttttaggc aaattagctg tttcgtccat
     1681 acgttcgagc cagtattttg cattattgta aattttgttt ccaaaaactc cggttacaaa
     1741 catggtgaaa tcaaagttcc tgtattcgca cgaaaagttc aaccctagtt caagtgccgg
     1801 gaatgggctg cctacaaatt cgcggtcatc cttgtttatc tggccatcat cattagaatc
     1861 tttatacctg atatcacccg gtttagcatt tggctgaatc atttttgttg ttgactcacc
     1921 cgtttcgctg tcggtagttg tttttgtata agcatatact tcgtcccaac tttggaaaat
     1981 tccggcggtg cgcaccaggt agaaatcacc caccgaacga ccttcttctg tacgattcac
     2041 tccattgaga ccaccttcac gatagctttg tccaagttta agaaccttgt tagacaaggc
     2101 agtcaggttt aatcctacgt tgtatttgaa tttgttttgt tgttccctgt atccaagtgt
     2161 taactcaaaa cctttattaa cgacttcgcc aaaatttgtc cagggagtaa tatctgttcc
     2221 atcggtccat gaagtaggaa gtttcactag aatatctttt gaatcggcat taaaatactc
     2281 tattgtacca tatactttat ttttaaataa ggtaaaatca accccaaggt ttaatgtagt
     2341 ttttgattcc cagcgaagat tcgggttggc acgtcctttc tgaatagctc caacattcaa
     2401 tatctggtcg cctccgaaaa ctccaccttc accagtagat atataagttg cataatcata
     2461 gctgccaata gtttgctggt cgccaagagt tccgtaacta gcccttaatt tcaaatcgtc
     2521 gagccagctc cgggatttct ccataaattt ttcctgactg atacgccatc ccaacgaagc
     2581 tgaaggaaaa tacccgtaac gataattaac accgaaagct gaagatccat cacggcggat
     2641 attggcttga accaggtatt tatcatcata ggcataattt atacgcccca gaatcgaagt
     2701 cattgacctg ttatcatcag ttccgtacat ttccatatct gtttttccgg catttattac
     2761 ccaaaatccg ggtaccagat cgtgaactgt caattcattt tgtttccatt ttctgtcttc
     2821 ggcagtgtat ccaagtaagc catcaaaaaa atgtttatta atctttttgg tgtaagtcaa
     2881 cgtattttca gaaatcagat ttgtaaaatc gccacgtctt tcagtaagtt ggttgctgta
     2941 ttttgaaaca tcgaggtatc gtatctgatc gaatgtagtt tcttccctgt cgtgccatgt
     3001 atggtattca attcccagat tggacttgaa ttttaaacct ttaataaatt ccatttccac
     3061 aaaggcattg cccattacac ggtttgaagt ttgtaaaaag tcacgtgttt cctgcatacc
     3121 aatcgggttt gtaccataag tttgatacaa cgaacttcct gttccatatt tcccgttagc
     3181 atctcttacg ggaataatag ggggcatgcg gcacaaatcg ataaaaggaa caccgatcat
     3241 tggtttggtt tcggtccgtg agaaaagcat attttcgcca aaagtaaaaa atcccttttt
     3301 catgtttgta tttacccgaa gtgcataccg atcgtgcctg ggccctttta ccacaccgtc
     3361 ctggctgaat aaatttccgg ataccaaata gttgccatcc tggcttcctc cagaaagcgt
     3421 tacattataa tcttgtgtat tcccggtttg gaagaactct ttttgccagt cagtgtttgt
     3481 caggacctga ccctgagttg gttcgcccgg ccattccata ccagcatttt cataagcctg
     3541 acgattaacc cggagaaact caaggctgtt catcatttct attcggtgag taatcgtttg
     3601 tacgccatag tttgcactga catcaatacg cggcgctccg ttttttcctt ttttcgttgt
     3661 aataataata acgccgttag cacctctggc accataaagc gatgtggcag aagcatcttt
     3721 caatacctgc atactttcaa tatcatttac attgaattcc ctttgcgaac cggttaagat
     3781 caatccatca accacataca gcggaccaac gttggaaaaa ctgccgacac cacggatacg
     3841 gatatcagct ccggaacccg gttcgccgga agtgcttact gatacacccg atacctgacc
     3901 ttgcaaggcc tgcccgatat tcggagactg cattttcttc atttggttta catcaacagc
     3961 cgaaacagca ccggttaaat cttttttacg ctgtgttcca taggcaacca ccacaatttc
     4021 atccaattgc ttaaggtctt cttttaatac aacatttact actgattttc cggcaatccg
     4081 aactgattgt gaaatgtaac cgagataaga gaatgtaagg gtggcagttg ctgaaggcgt
     4141 attaatggag aacttaccat ccatgtcggt aatagcacca acttttgaac cttctacaag
     4201 gatacttaca ccaatcaaag actcacccga ttcgcttgta accgtaccat caacatgatg
     4261 tcccgtttgc gatgagttct gttgggcatt aacagcactt gcctgaaaga gaaagaagag
     4321 aaacagacca attgacatta gatttaatgc caatggtgat ttcgatttga actttgtgtt
     4381 ttttgacata gtattaataa aaataatagt aatttagatt tttgaaataa aatttctgtt
     4441 tggagaaaac gactatttta ttccgaattc aaagatacaa ggagggaaat cattcatttt
     4501 agaaaaaagt atcaatc
//
LOCUS       DATDNM010000146         3417 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1728592, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000146 DATDNM010000000
VERSION     DATDNM010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1728592"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..3375
                     /locus_tag="VI413_02500"
     CDS             112..3375
                     /locus_tag="VI413_02500"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEY6913520.1"
                     /translation="MLNIYRASAGSGKTYRLTQDYIHLLFDPKKERAHRRILAVTFTN
                     KATDEMKTRILKELHALSQGGKSDYREGLMAKFHMDENAVNVRAKHILTTILHDYSSF
                     SISTIDRFFQQVIRSFARDIGVHGGYNLELDNTSTLEQSVDNLFLDLSKDENKQLLQW
                     LTAYAEERIEQSENWNMRSNIMDLGKEIFKESYQHKAEDTNRKLHEREFLSNYRKSLR
                     DIKTAFEAKVKQTATDGLNVMARNGLTHEDFVYKTTNVLEKLVKGKLEISNRFIGFAD
                     DVTNCYTKSKPQDVKSAIESAYNSGLGKCFQQIVELLSIDIVTYNSAVMVLKHINTLG
                     ILSDLAVQIKKLTDEQNTMLISDSNMLLNKIIDNSDTPFVYEKTGITIDNFMIDEFQD
                     TSTLQWKNFHPLMSNSLSAGKFNLVVGDVKQSIYRWRNSDWKLLDEQILTDFRSEQIH
                     EENLETNWRSDKNIIDFNNSFFRRAASLLQSKLNENLQAVLPVYPALEALTHKIEHAY
                     ANIHQQASPKAGTGRVEVRFIAADENEDGWKAESLERLPVLLEELQGRGYRPADICIL
                     VRKNDEEQQVIHRLLNYKTTPEAKSDVCYDIMGNEGLLIGAAASVRFVLGVLQLFVNP
                     ADSIQQTIVNYEYARGRQNKSENEALNTCFSMPISHENVFSFLFTNEENERLKEVQHS
                     SLYDMVEQIISLFGIGNWHNEAVFVQAFQDVVFRYTTGKTADLNSFLIWWKKNGGKQC
                     ISTPDNQSAMRIMTVHKSKGLDFRVVIMPFCDWDLDSRMRNILWCEPTVAPFNELPLL
                     PIEYGSKLGQSIFAENYFDEQMHLFIDSLNVAYVAFTRAKNELICMAPAPKKEVESLD
                     KINSLSALLTACFSVETPGLDAEIIPLSKAYDEVSKAFSLGESTLIIYKDVLDSGSNE
                     KINNYPSVSSSDRLRIRHQSLDYLLENQLLTDSRLNYGLIMHDILRNITRKSDQQKAI
                     QGMIREGRINEKESKTVEQEMEKFWNLPGTETWFAGDVRVLNETTILIPTGEQYRPDR
                     VIIKGNEATIVDYKFGDKESKTYIQQVKQYMNLIAEMGYQTSGFVCYVSLGKVEKVS"
BASE COUNT         1010 a          699 c          804 g          904 t
ORIGIN      
        1 gatgtttttt aacccttagt agaaagtgta aaaaattcta ttttgccttt atttatcaat
       61 aaaatattaa actaaacggc attacattat aaattgtgaa ttaatttctc tatgctcaat
      121 atttatcgcg cctctgccgg ctcgggcaag acataccggc ttacacaaga ttatatccat
      181 ttgctgttcg accctaaaaa ggagcgggca catcgtcgca ttttggccgt aacgtttacc
      241 aacaaggcca ccgacgaaat gaaaacgcgt attctgaaag aattgcatgc attgtcgcaa
      301 ggcgggaagt ctgattaccg cgaaggtttg atggcgaaat tccacatgga cgaaaacgct
      361 gtaaatgtca gggcaaaaca tatcctcacc accattctgc acgattattc ctcgttctcg
      421 ataagtacta tcgaccgctt ttttcagcag gtgatccgtt cgtttgcccg cgacattgga
      481 gtgcatggcg gttacaacct ggagctggat aatacgtcca cattggaaca atctgtcgat
      541 aatttatttc tggatttgtc caaggacgaa aacaagcagt tgctgcaatg gctcactgcc
      601 tatgccgagg agcggattga gcagtccgaa aactggaata tgcgcagtaa tatcatggat
      661 ttgggcaaag aaatctttaa agaaagttat cagcacaaag ccgaagatac gaaccgcaag
      721 cttcatgagc gcgaattcct gagcaattac cgcaaaagcc tgcgtgacat aaaaaccgct
      781 ttcgaagcca aagtaaaaca aaccgctacc gacgggctga acgtgatggc ccgcaatggt
      841 ttgacgcatg aggattttgt gtacaaaact acgaatgtat tggaaaagct ggtgaaagga
      901 aaacttgaaa tcagcaatcg ttttatcggg tttgccgacg atgtgaccaa ttgttacacc
      961 aaatccaagc cgcaggatgt aaaatcggct atcgaatcgg cttacaacag cggcttgggg
     1021 aaatgtttcc agcaaattgt ggagttgctg agcattgata ttgtgactta taactcggcg
     1081 gtaatggtgc tcaagcacat caatacgctc ggcattttgt ccgatttggc ggtgcaaata
     1141 aaaaagctga ccgacgagca aaataccatg ttgatttcgg attccaacat gttactcaac
     1201 aaaattatcg ataacagcga cacgcctttt gtgtacgaaa aaacgggtat caccatcgat
     1261 aatttcatga ttgacgagtt tcaggacacg tccacgctgc aatggaaaaa ctttcacccg
     1321 ctcatgtcaa acagtttgtc ggccggcaaa ttcaaccttg tggtaggtga tgtgaagcag
     1381 agtatttacc gctggcgtaa ttccgactgg aaactactcg atgagcaaat tctaaccgat
     1441 ttccgttccg aacaaattca cgaagaaaac ctcgaaacca actggcgcag cgacaaaaac
     1501 attatcgatt tcaataattc gttctttcgc cgtgcggcaa gtttgttgca aagcaagctc
     1561 aacgaaaacc tgcaagctgt tttgccggtt tatcccgcgc tggaagcgtt gacgcataaa
     1621 attgaacatg cttatgctaa tattcatcag caagcttcgc ccaaagccgg aacgggtagg
     1681 gtagaggtac gtttcattgc tgcggatgag aatgaagatg gttggaaagc tgaaagcctt
     1741 gagcggctgc cagtcctact cgaagagttg caggggcgcg gatatcgtcc ggcagatatt
     1801 tgcattctgg tgcgcaagaa cgacgaagaa cagcaagtta tccatcggct gctgaactat
     1861 aaaactactc cggaagcaaa gtccgacgtg tgttatgaca ttatggggaa tgaaggtttg
     1921 ctgattggtg cggcggcttc ggtgcgtttc gtgctgggcg ttttgcaatt atttgtaaat
     1981 cctgcggata gtattcaaca aactattgtg aactatgaat atgcccgcgg gcggcaaaat
     2041 aaatcggaaa acgaagccct gaatacttgt ttttctatgc caatttcgca tgaaaatgtc
     2101 ttttctttct tatttaccaa cgaagaaaat gagcggttaa aagaagtgca acacagttcg
     2161 ctttacgaca tggtggagca gattatttcg ctgttcggca ttggcaattg gcacaatgaa
     2221 gcggtgtttg tacaggcatt tcaggatgtg gtttttagat atacaacagg caaaacagca
     2281 gacctaaaca gctttcttat ttggtggaaa aagaacgggg gcaagcaatg tatctccacg
     2341 cccgataacc aaagtgcaat gcgtattatg actgtccaca agtcgaaagg acttgatttt
     2401 cgcgtggtga ttatgccttt ctgcgattgg gatctggaca gccgcatgcg caatattttg
     2461 tggtgcgaac caactgttgc tccgttcaat gagcttccat tattgcctat tgaatatggt
     2521 tccaagcttg ggcaatctat ttttgcggaa aactatttcg acgagcaaat gcatttgttt
     2581 attgatagtt tgaacgtggc gtatgtggca tttacccgtg ccaaaaacga actgatttgc
     2641 atggctcctg cgcctaaaaa agaggtagaa agcctggata aaatcaattc attatccgca
     2701 ttgcttacgg cttgtttcag cgtggaaact cccggcttgg acgctgaaat tattccgttg
     2761 tcgaaagctt atgacgaggt ttcaaaagcc ttttcgttag gtgaatctac gctaataatc
     2821 tacaaggatg tgctggattc cggtagcaat gaaaagataa ataactatcc gtcggtgagc
     2881 agttccgatc gcttgcgcat tcgccaccaa agcctggatt atttgctgga aaaccagcta
     2941 ctgactgata gtcgcttgaa ttatggtctt attatgcacg atattttgcg taatattacc
     3001 cgaaaatccg accaacaaaa agccattcag ggaatgattc gggaaggtag aatcaacgaa
     3061 aaggaaagca aaacggttga gcaggaaatg gaaaaattct ggaacttgcc cggaactgaa
     3121 acatggtttg ccggggatgt ccgcgtgttg aatgaaacaa ctattcttat cccaaccggc
     3181 gagcaatatc gtccggacag ggttatcatt aaaggcaatg aggcaacgat tgtggattat
     3241 aaattcggag acaaagaaag caaaacttat attcagcaag tgaaacaata catgaacctg
     3301 attgctgaaa tgggctatca aacgagtggt tttgtctgtt atgtgagtct ggggaaagtg
     3361 gagaaggtaa gctagcgttc aaccgtttct tttacggttt gacgcgttga tagacat
//
LOCUS       DATDNM010000147         3296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1728706, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000147 DATDNM010000000
VERSION     DATDNM010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3296
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1728706"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1206)
                     /locus_tag="VI413_02505"
     CDS             complement(<1..1206)
                     /locus_tag="VI413_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005866938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HEY6913521.1"
                     /translation="MSLQSEIQRRRTFAIISHPDAGKTTLTEKLLLFGGAIHVAGAVK
                     SNKIKKTATSDWMEIEKQRGISVATSVMGFEYRDYKINILDTPGHQDFAEDTYRTLTA
                     VDSVIIVVDTAKGVEAQTRKLMEVCRMRNTPVMIFVNKMDREGKDAFDLLDELEAELG
                     IGVRPLSWPINQGFSFKGVYNIYKENLQLFTPNKQSISESVELADIDSPELDKLVGEH
                     DANKLREDMELINGVYSEFDTEKYLAGQLAPVFFGSALNNFGVKELLDCFVEIAPSPR
                     PIHSLEREVNPYEEAFSGFIFKIHANMDPNHRSCIAFVKICSGKFERNVNYKHIRHGK
                     MMRFSSPTAFMAQKKETVDEAYAGDIVGLPDTGNFKIGDTLTGGENLHFKGIPSFSPE
                     MFKYIENADP"
     gene            complement(1471..3030)
                     /locus_tag="VI413_02510"
     CDS             complement(1471..3030)
                     /locus_tag="VI413_02510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913522.1"
                     /translation="MKKNILTLALLASCSFIMAQTEFDALKYVQTDINGTARYVGMAG
                     AFGALGGDASAIKDNPAGLGIYRRSELVGTMNVLFQKSSSTWNNTTGMSDLYKIGFNN
                     LSYVIASPTWRSENGTEGLLSSNFSFGYNRLKSFNRSLNIKGGSSSSSLTHYMADFTG
                     NLTGTDLTYTNSYEPFDNTDIPWLSVLAFEGGLMHETINSEGKSSWSSLLANTETVTP
                     AYKLFEKGYLDEYSIGWAGNFSNKFFLGATVNFQSLNYLAISNYSESFSGLGGMSLKD
                     SISSNGNGFNLKVGTIICPAEFLRLGLSLQTPTIYVMTDNYYSRLNYDTDLLGYISTP
                     GGYSNYQIQSPMLLNASAAFIIGNKGLLSAEYDYANYTGTRLRSETGDADSFDSENEG
                     MRNNINNVRTIKIGGEYKLTNNFSLRAGYANSSNATVPGASKSVRDNTLRTDMEFFQH
                     NRTDYLTAGFGYRESGWFIDFAYMNKMLSETFYPYNTNVIAERNPNLAVSPAKLTTSN
                     NNVVVTLGFKF"
     gene            complement(3053..>3296)
                     /locus_tag="VI413_02515"
     CDS             complement(3053..>3296)
                     /locus_tag="VI413_02515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913523.1"
                     /translation="HTAVEAEALQTVEILQIIIVAHLIVVHLIAAVVLHQAVAHIQVV
                     AVLAEAVVVVHVVQAEAVTLPEADDNLRTNTFKQFV"
BASE COUNT          940 a          656 c          636 g         1064 t
ORIGIN      
        1 tgggtcggcg ttttcaatgt atttgaacat ttcgggtgag aagctcggaa tacctttaaa
       61 atgaagattt tcaccacctg ttaacgtatc accaattttg aagtttccgg tatcaggtaa
      121 acctacaata tcgcctgcgt atgcttcgtc cacagtttct tttttctgtg ccataaatgc
      181 agtaggcgag gagaaccgca tcatttttcc atgacggata tgtttgtaat tgacatttcg
      241 ctcaaattta cctgagcata ttttcacaaa cgcaatacaa ctgcggtgat ttgggtccat
      301 gttggcatgg attttaaaaa taaagcctga aaatgcttct tcatacggat taacctcacg
      361 ttctagcgag tggattggtc ggggagaagg agcaatttca acgaaacagt ctaataattc
      421 ctttactccg aaattattca atgcactacc gaaaaaaacg ggagcaagtt gtcccgccag
      481 gtatttctca gtatcaaatt cagaataaac tccgttgatc aactccatat cttcacgaag
      541 cttgtttgca tcgtgttcac caaccagttt gtccaattcc gggctatcaa tgtcggctag
      601 ttcaactgat tcgctgattg attgtttatt gggagtgaaa agttgtagat tttctttgta
      661 tatgttgtat acgcctttga atgaaaatcc ctgattaata ggccagctaa gtgggcgtac
      721 cccaatgccg agttcggctt caagttcatc gagcaagtcg aacgcatctt ttccttcgcg
      781 gtccatttta ttgacaaaaa tcattaccgg tgtgttgcgc atacggcaaa cttccattag
      841 tttgcgggtt tgtgcttcta cccctttggc agtgtcaact acaatgatta cgctgtctac
      901 tgcagtcaga gtgcggtatg tatcttcggc aaagtcctgg tgaccaggcg tatcaagaat
      961 gttgatttta taatcgcgat attcaaaacc cattaccgaa gttgccactg aaataccacg
     1021 ttgtttttcg atttccatcc agtccgaggt ggctgttttc ttgattttgt tcgattttac
     1081 ggcacccgct acgtgaattg caccaccgaa aagtaatagt ttttcggtaa gcgtggtttt
     1141 acccgcatcg gggtggctaa tgatggcaaa ggtgcgtcgg cgttgtatct cagattgtaa
     1201 agacatgaat acagtttata attgacagtt aatagttgat aatctgtatg aaattgaatt
     1261 atttcatttg attttttgcg ggtgcaaagg tacagctttt aatacaattt gacaagcgat
     1321 attaaattga gtatgtccca ataatttatt gatgaattga gatctgtatt ttaatgtgtt
     1381 agcactatgt ataagaaaca aaaaggtcga cccgaaagcc gacctatggt gcaaaattaa
     1441 aaaccaaaat tattcaatcg taaaactgtc tcaaaactta aatcctaatg ttacaactac
     1501 gttgttatta gaagttgtca gtttagctgg actaacagct aagtttggat ttctttcagc
     1561 aataacattt gtattataag ggtagaacgt ttcacttagc attttgttca tataagcaaa
     1621 gtcaataaac cagcctgatt cacggtagcc aaaacctgct gtcaggtaat ctgtgcggtt
     1681 gtgttggaag aattccatat cagtgcgaag cgtattgtct ctaactgatt ttgatgcccc
     1741 gggcacagtt gcattgcttg aatttgcgta accggcgcgt aatgaaaagt tgtttgttaa
     1801 tttgtattcg cctccaatct ttattgtccg aacattattt atgttgtttc gcataccttc
     1861 attttcactg tcaaagctat cagcatctcc ggtttcgctt ctcaaacgcg taccagtgta
     1921 atttgcataa tcgtattcag cacttaaaag tcctttgttg ccaataataa aagcagcact
     1981 tgcattcaat agcattgggc tttgaatctg atagttactg tatccgcccg gagtgcttat
     2041 ataacccaac aagtctgtat cataatttag tcttgaatag taattatcag tcataacata
     2101 tatggtcgga gtttgtaatg ataatcccaa acgtaggaat tcagcaggac aaattattgt
     2161 accaactttc aggttaaaac catttccgtt gctggatata ctatctttca ggctcattcc
     2221 tcctagaccg gaaaaggatt cgctataatt acttatagcc aaataattca aagattggaa
     2281 attgactgtc gctccaagga aaaatttgtt actaaagttt cccgcccaac cgatcgaata
     2341 ttcatctaaa tatccttttt caaaaagttt ataagctggt gtgactgttt cagtatttgc
     2401 cagcaatgaa gaccatgaac ttttaccttc actgttgata gtttcatgca ttagcccccc
     2461 ttcgaaagct aaaacagata gccagggaat atcggtgtta tcaaacggtt cgtaagaatt
     2521 tgtataagtc aagtccgtac cagtaagatt tcccgtaaaa tcagccatat aatgagtcag
     2581 tgaagaagag gatgatcctc ctttaatatt caggctgcgg ttaaaacttt taagcctgtt
     2641 gtaaccgaac gagaaatttg aacttaaaag cccttcggtt ccattttcac tacgccatgt
     2701 aggtgatgcg ataacatatg ataaattgtt aaacccaatt ttgtataaat cgctcattcc
     2761 agttgtatta ttccaagtag acgaactctt ttgaaataat acgttcattg ttccaacgag
     2821 ctcggaacga cgatagatac caagtccggc aggattgtct ttgattgctg aagcatcgcc
     2881 tccaagcgca ccaaatgccc cggccattcc aacatatctg gcagttccgt taatatctgt
     2941 ttgaacatat tttaatgcat caaattctgt ttgagccatt atgaatgagc agcttgctaa
     3001 tagagctagt gttaatatat tctttttcat tgttgtattc tgttttagta ggttatacaa
     3061 attgtttaaa agtattggtt cttaaattat cgtctgcttc cggcagagtt accgcctccg
     3121 cttgaactac gtgaaccacc accactgctt ccgccagaac tgctaccacc tgaatatgag
     3181 ctactgcttg atgaagaact accgctgcta taagatggac tactataaga tgggctacta
     3241 taattatttg aagaatttcc actgtttgaa gagcttctgc ttccactgct gtatgt
//
LOCUS       DATDNM010000148         4884 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_447620, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000148 DATDNM010000000
VERSION     DATDNM010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4884
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447620"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..933)
                     /locus_tag="VI413_02520"
     CDS             complement(<1..933)
                     /locus_tag="VI413_02520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913524.1"
                     /translation="MKRNILYLALLVVTGWLVSCNSTPDITNTMLDSGNFKYDVSDSL
                     QRHLVSEYIPSPTEAQKNTPVLIAAHGYTATTFEWDEFRNYADSAGTFYVSQVLLGGH
                     GTSYQDFKSTSWEGWQQSIKDEYSRLSNLGFKKIYLAGSSTGAPLIINLVKSGFFAGY
                     TTPKGIFLVDPIIVSSNKTLTMVGLLGPVLGYTSVELSAGEEHRWYVYRPQETLKQLM
                     KLINLTRLDLETGITLPAGTYMKVYKSRTDDVADPVSALLIYKGMKTTTGGEIDAELV
                     DSKIHVFTRLRGREGVTASDYALQHKVFKEMEDKI"
     gene            complement(953..1513)
                     /locus_tag="VI413_02525"
     CDS             complement(953..1513)
                     /locus_tag="VI413_02525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913525.1"
                     /translation="MKKILLLFVAIMLQIPVMKAQLTTSDELGVGLRFQKTEQLYWEN
                     GVGLDYTSDVLLKKHIHLKMSYATSRLGSAMIGNAVRQDNFLVGADWHFRPQKPFQIF
                     AGLNTGFFHADMENSTFDVLPHNSLLLSGEAGLFYKFKFPLAASLSVGYNLITGDGVT
                     GPGTLFPVFYQLSVFYRIPVESSKQY"
     gene            complement(1722..3626)
                     /locus_tag="VI413_02530"
     CDS             complement(1722..3626)
                     /locus_tag="VI413_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005638066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6913526.1"
                     /translation="MRTTIIDLLNQSVDKYANNPFLWEKTTAEFVPTTYLETKKQAHT
                     LAAGLIQLGVQPGDRIALLSEGRNAWIIGELGILHAGAVNVPLSIKLEESNDLIFRLV
                     HSEAQYILVSGGQLKKIRNIAGALPEIKKMIVLDEQPEYEPNELTWNGMMEAGAAYLK
                     KQPDAVEKRAGAIGPDDLANITYTSGTTADPKGIMLTHRNYTANVEQALTLMTIPPTY
                     RTLIILPLDHCFAHVAGFYSFMAMGASVGTVQSGKTGVETLKNIPINIKELKPNLLLS
                     VPALAKSFKKNIETGVRSQGPVVNWLFNTALNMAYAYNKEGYNKGQGMQIFRKPLLAL
                     FDKIIFSKVRENFGGELEFFIGGGALLDIDLQRFFYAIGIPMFQGYGLSEATPIISSN
                     GMKNHKLGSSGYLVKPMELKICNSEGNELPNFEKGEIIIKGENVMAGYYKNETATAET
                     VVDGWLHTGDMGYMDNDGFLYVVGRFKSLLISSDGEKYSPEGIEEALSDNSYFIDQVV
                     LYNNQNPYTTALIVPNKEALKRYVKRKKPNLNWESAEAKELALTKLQREINEYRKGGK
                     YEGMFPERWLPAAVAVIGEPFTEQNGLVNSTMKIMRGKVEERYANRIEALYATGAKEI
                     VNNENVEAIS"
     gene            complement(3786..>4884)
                     /locus_tag="VI413_02535"
     CDS             complement(3786..>4884)
                     /locus_tag="VI413_02535"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEY6913527.1"
                     /translation="FPQSKSKIYFNGSVGIGCAYYTYGLKYLDGTAITATDTYFDPKY
                     SMFRPIQLLDASLVPVKSGLAVSVPVTFSAEYNFSKPVSVGAKFHYRAYAKDNLEGAT
                     ALNSNGVTNDYVVAGTLFLRYKFCAVKKDHLRNIQQDVYEPDKGLLLAKELEGKLNKL
                     AARVDTIGNKVDSLMPRVVRLENMLSTDGPDADGDGVPDVRDKDMNTPANTPVDFWGK
                     TLIVNNYSTAGSNNTPLGAGYSNDVNGNKPAGARKAIYIPDDVPAVYFDFDQIELDDA
                     ALITISKIASKMKADPTLYVEVRGYCDYSGNNPYNNLLSQRRSDRVKAELMKVWGIPF
                     DHVISNGKGKVIEPRAKYKPNRRCDFFFGRL"
BASE COUNT         1298 a         1174 c          977 g         1435 t
ORIGIN      
        1 tattttatct tccatttctt taaacacctt gtgttgcaac gcataatcgg atgccgtaac
       61 accctcacgc cctctcaatc gcgtgaaaac atggattttc gaatctacca gttctgcatc
      121 aatctcacca cccgtagtag ttttcattcc tttgtaaata agcagggcac ttaccggatc
      181 ggccacatcg tcggttcggc ttttatacac tttcatgtat gttccggcag gcagggtgat
      241 tcctgtttcc aaatccaggc gtgtcagatt aatcagcttc atcagctgtt ttagcgtttc
      301 ctgcggacga tacacgtacc aacggtgttc ctcgccggcg gacagttcca cggaagtata
      361 tcccaacaca ggtcccagca aacccaccat ggttagcgtt ttgttggacg acacaataat
      421 cgggtcaacc aggaaaatac ctttcggagt tgtgtatccg gcaaaaaagc ctgatttcac
      481 cagattgata atgagcgggg ctccggtaga cgagccagcc agatatatct ttttaaaacc
      541 gagattgcta agcctgctgt attcatcctt tatagactgt tgccatcctt cccagctggt
      601 gcttttaaag tcctgataag atgtaccatg cccgcccaac agcacctggg atacataaaa
      661 tgtaccggcc gagtccgcat aattcctgaa ctcatcccac tcaaaagtag tggccgtata
      721 tccgtgtgct gcgatcagca caggcgtgtt cttttgcgct tcggtaggcg acggaatgta
      781 ttccgacacc aaatgccgct gtaaagaatc ggaaacgtcg tatttaaaat ttccgctatc
      841 gagcatagtg ttggtgatat ccggcgtaga attgcacgaa accaaccatc ccgtaacgac
      901 cagcaaagcg agatataata tatttctttt cattttaatc aatttttgaa ggttagtact
      961 gcttgctgct ctcaactggt atcctgtaaa aaacactcaa ctggtaaaaa acaggaaata
     1021 acgttccggg tccggtcaca ccatcgcctg ttatcaggtt ataacccact gaaagactgg
     1081 cagccaacgg gaacttaaac ttgtagaaca accctgcctc gccggacaac aagagcgagt
     1141 tgtggggcaa cacatcaaaa gtggaatttt ccatatcggc atgaaaaaat ccggtgttca
     1201 gcccagcaaa aatctgaaag ggtttctgtg gcctgaaatg ccagtccgct cccaccagga
     1261 aattatcctg ccgcactgca ttgccaatca tagcactgcc aagccggctg gtggcataac
     1321 tcattttcaa atgaatgtgc ttctttagca gaacatcgga agtataatcc aatccaacac
     1381 cattctccca atagagttgt tccgttttct ggaatcgaag tcccacgccc agttcatccg
     1441 aagttgttag ctgggctttc attacaggaa tctgcagcat tattgccaca aataatagaa
     1501 gtattttttt catgtgtaat aattgttttt tctgattatt cgcaaagtat ccaaatgtaa
     1561 tctttaatgt agtaaaataa ttgggtttcg cggtttgtaa ccgcgttatt aaagctaata
     1621 tcgcggttaa aaaccgcgaa accagactca aatacgatat tcccatttat taggacactt
     1681 tgcggataat caggtatttc gacgcttcaa tctcttttca cttacgaaat ggcctcaaca
     1741 ttctcattgt ttacaatttc tttggctccg gtggcatata acgcttcaat gcggttggca
     1801 tagcgttctt ctactttgcc gcgcataatt ttcatggtgc tgtttaccaa accgttttgt
     1861 tcggtaaaag gttcaccgat aacggcaacc gcagcaggca accagcgttc ggggaacata
     1921 ccttcgtatt tcccgccttt gcggtactcg tttatctcgc gctgaagttt ggttagagca
     1981 agctccttcg cttctgcaga ttcccagttc aggtttggtt ttttcctttt cacgtagcgt
     2041 ttcagcgctt ctttattggg cacaatcaga gccgtggtgt atggattctg attgttgtaa
     2101 agcactacct gatcgataaa gtaagaatta tccgacagcg cttcctctat gccttcggga
     2161 ctgtattttt caccgtcgct ggatatcagc agacttttaa aacggccaac cacatacagg
     2221 aatccgtcgt tgtccatgta acccatatca ccggtatgca accaaccatc aacaactgtt
     2281 tcggcagttg cagtttcgtt tttatagtaa ccggccatta cgttttcgcc tttgataatg
     2341 atttcacctt tttcgaaatt gggcaattca tttccttcgg aattgcaaat tttgagctcc
     2401 attggtttta ccagatagcc tgaagagccg agtttatggt tcttcattcc gttcgacgaa
     2461 ataatcggcg tagcctcgct cagtccgtaa ccctggaaca tgggaatgcc aatggcataa
     2521 aagaaccgct gcaaatcgat atccagcagc gcaccacctc cgataaagaa ctccaactcc
     2581 ccaccaaaat tctcacgcac tttggagaaa atgattttat caaaaagagc cagcagcggt
     2641 tttctgaata tctgcatccc ctgccctttg ttataacctt ccttgttgta tgcatacgcc
     2701 atgttcagag ccgtattaaa caaccagtta actacaggtc cctggctacg tacacctgtt
     2761 tcaatattct ttttaaaact tttagccaaa gccggcacac tcagcaaaag gtttggtttt
     2821 aattccttga tgttgatcgg tatatttttc agcgtttcca caccggtctt gccactttgc
     2881 accgtaccca cgctcgctcc catagccatg aagctataga aaccggctac atgggcaaaa
     2941 cagtggtcga gtggtaaaat aataagcgtc cggtaagtgg gcggtatagt cattaaagtc
     3001 agcgcctgct ccacgttggc cgtataattg cgatgggtga gcataatccc tttcgggtcg
     3061 gcagttgttc cggatgtata ggtgatattc gctaaatcgt ccggaccaat tgctcccgca
     3121 cgtttttcta ctgcatcggg ttgttttttc agataagcag ctccggcttc catcatcccg
     3181 ttccaggtca attcgttagg ctcgtattca ggttgctcat ccagcacaat catttttttt
     3241 atttcgggaa gcgccccggc tatattccgg attttcttca gctgtccgcc cgaaaccaga
     3301 atatattgag cttcggaatg cactaagcgg aatataagat cgttgctttc ttccagtttt
     3361 atggataaag gcacattcac cgccccggcg tgcaaaatac ccagttcacc aataatccac
     3421 gcattgcgtc cttcggaaag cagcgcaatc ctgtcaccgg gttgcacccc caactgaata
     3481 agcccggcag ccagcgtatg ggcttgtttt ttagtttcga gataggtggt gggtacaaat
     3541 tcagcagtgg ttttttccca taaaaacggg ttattggcat atttatcaac actctggttc
     3601 agcaggtcaa tgatggttgt tctcatgtgt cgtgtttttt agtttagact tccttattca
     3661 taaaaaaaac gttcggaagt gaagaataac ggtggtaaag ataatttatt ttttcagaaa
     3721 gcagttttat tcttacaaca aagcccacta aaaaagcggg ctttgtctta taatgtaatt
     3781 cctgtttata gtcttccgaa gaagaaatcg catcgacggt ttggtttgta ttttgcacgc
     3841 ggctcaatca cttttccttt tccgttggaa ataacatgat cgaacggaat accccacacc
     3901 ttcatcagtt cggctttaac ccgatccgaa cgacgctggc tgagcaaatt attgtatgga
     3961 ttgtttccgg aataatcaca atatccacga acttcaacat ataaagtcgg atcagctttc
     4021 attttcgagg ctattttact aatggtaatc aatgccgcat cgtcaagttc tatctggtca
     4081 aagtcaaagt acactgccgg aacgtcatcc ggaatataaa tagccttgcg tgctcctgct
     4141 ggtttatttc cattcacatc atttgagtag ccggcaccca aaggtgtatt atttgaacca
     4201 gcagtagaat aattattcac aatgagtgtt ttaccccaga aatccacagg cgtattagct
     4261 ggtgtattca tatccttgtc ccttacgtca ggtacaccat caccatcagc atcaggccca
     4321 tcggttgaca acatattttc caaccgcacc actcttggca tcagactatc cactttgtta
     4381 cctatagtat ctactctggc tgccagttta ttcagtttac cttccagttc tttggccagc
     4441 aacaggcctt tatccggctc gtaaacatcc tgttggatat tccgcaaatg atctttctta
     4501 acagcacaaa acttataacg caaaaacaaa gttccggcca ctacataatc gttggtaact
     4561 ccatttgaat tcaatgcggt ggcaccttcc agattatctt ttgcataagc cctgtaatga
     4621 aactttgcac caacagaaac gggttttgaa aaattatatt cagccgagaa cgttaccgga
     4681 actgaaactg ccaaaccgga ttttactggt accaatgagg cgtcgagtaa ctgaattggc
     4741 ctgaacatgc tatatttggg atcgaaatat gtatcggtgg cagttattgc cgttccatcg
     4801 aggtatttca aaccataggt ataataagca caaccaattc ctacagatcc attaaaataa
     4861 atttttgatt tagattgggg aaat
//
LOCUS       DATDNM010000149         5549 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_767445, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000149 DATDNM010000000
VERSION     DATDNM010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5549
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_767445"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1691)
                     /locus_tag="VI413_02540"
     CDS             complement(<1..1691)
                     /locus_tag="VI413_02540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913528.1"
                     /translation="MKKITRLFLLIAAIVASGNMANAQSNECAGTSTEAAQGTFTVGY
                     NYAFTTSGTDVTFTCECLDSKSGLVAYAWTYNPNFAETSMPLVSGQKFSKTFTGQIVG
                     ATFSVACKFAYSGGMAVTKTFTYTVGSDCGASLDTQAPTLFTATLGVLTKSSAELLLN
                     ATDNNGGAINYTISYGSTPTVLTTTGISGIQKSYTISGLTAATAYTFSVTAKDAAGNT
                     ASNSPIAVLSTTPTSEYSVISSPSVAAGYSLDNLTDGISTTNWKVLTKTVSYLTFVYP
                     SARLYNTIALTSGENTGRDPKDWTIKASNDTVANGWTTLDTQTAQTFATTSTVNTYSF
                     ANSTAYKFYRLHTTAVNGSSSSTNLGELAFSYVMPAAPTPTSYSAQKVISVFSDAFTN
                     VSGTNFNPGWGQATTQSVIQIGSDNVLKYENLNYQGTVLGSHIYPLSMKYLHIDVWSA
                     DETSLQVFPICWTGTANEAEKYKTLTPIALNQWNSFDIPMTDFTSQGLTMADVYQIKI
                     VGTGGKTVYLDNIYFYDNSVDVDAQAPTAFTATAGTLASDAVELLLNATDNSGAIS"
     gene            2030..4915
                     /locus_tag="VI413_02545"
     CDS             2030..4915
                     /locus_tag="VI413_02545"
                     /inference="COORDINATES: protein motif:HMM:NF019136.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triple tyrosine motif-containing protein"
                     /protein_id="HEY6913529.1"
                     /translation="MKRYFWCLLLSSAAMLSYANQPMVRNFTRNNYKSGTQNWAIAQD
                     ESNSMYFANNNGLLQFDGKNWATYPIINGTNVRSVISTKDGRFYASTFNDFGYFQKQK
                     ESQRFEYHSLINKSGVNPKSSNELYTIYQGDKKIYFQSEKSIYEYDGNKITPYTFSYK
                     IDESAIVHNILFVTSSQSGAFMLNGKIFIRIPGSEILINKKVVSILPFNGNKILFVTS
                     FNGAFLYDGENIVPYKTGIEDFLMKNQVFCATTNGRQLVFGTVQRGIAVQNIADGSVI
                     YVNTYTGLQNNTVLSAAFDNQQNLWLGLDNGIDYVMLNSPILNIFGTNNLYGAGYTSF
                     LKNNILYFGTNQGLYTTNYPLPNTPLPMQLRLMQGMEGQVWCLNEIDNTLFCGDDQGA
                     FIINGDKSERIQGLPGTWSFKPVRNHPDLILGCSYQGLFILKKTAEKWKFAHFIKGKF
                     NESSPMFEEDSDGTLWFSHWQKGLFRLHLNAAVDSITRIDLYNEKKGFPSNRNNTLFR
                     IDNEIVFSSERGFYKFNKKTDKMDPYEKWNKLFGTLPSYMRLHENKNGDVWCVSGRFI
                     GLAKKQANKSYRMDSLTYRILQPKIITGFEHFYCIDNNNIIMSTEDGFSWIDTRREIV
                     SKSNFKVFLHNIIVTNDKLSGNKRIFGANNTRESFKHSQNSLRFEFIAPEYRNEGMVQ
                     YSYMLENYDDSWSEFSSDNVKEYTQLPRGHYVFKVRARSILESKEAVCTYSFTILPAW
                     YETQIAFIIYAILFILLVVGLAIFVNKTSKKGALEMEKRKELEIQEQQKQFEAETSAK
                     KKEIKELKNQQLQYELRHKSQELASSTMNLIRKNEILLEVMDHITKVTSDIKTNSDTG
                     VVLSRLGKMERNIRQNIENDNNWKRFEENFDLVYENYLKRLGEMYPGLNVSDKKLCAY
                     LKMDLSSKDIAPLLNMSVRSVETNRYRLRKKMGLDRDVNLSEFLQRF"
     gene            complement(5169..>5549)
                     /locus_tag="VI413_02550"
     CDS             complement(5169..>5549)
                     /locus_tag="VI413_02550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913530.1"
                     /translation="DIALYEESTFAPYQANGESYLFFGKSQGVEDTDVEIKYVAINNT
                     GAFAPQNPSTATSYVPVVNNLKVSSNAGQLTIITNKPTFVRVYDIAGACVAQFNVQSI
                     KKLTLNQGVYVVKSADEVVKVVNK"
BASE COUNT         1789 a         1064 c         1089 g         1607 t
ORIGIN      
        1 gaaattgcac ctgaattatc ggtagcattg agcaaaagtt ctacagcatc cgaagctaat
       61 gtacctgcag tagcagtaaa tgcagtaggt gcttgtgcat caacatcaac actgttatcg
      121 taaaaataga tattgtctaa atagactgtt ttgcctccag tacctacaat tttaatttga
      181 taaacatctg ccattgtcaa tccctgactg gtaaaatcag tcatcggaat atcaaagctg
      241 ttccattgat taagagctat cggagttaat gttttatatt tctcagcttc gttagctgtt
      301 cctgtccaac aaattgggaa tacttgcaat gatgtttcat cagcactcca aacatctatg
      361 tgaagatatt tcatgctaag tggataaata tggcttccca aaacagttcc ctgatagttt
      421 aaattttcat atttcagtac attatccgaa ccaatctgaa taaccgactg ggtagttgcc
      481 tgaccccagc ccggattaaa attagttcct gaaacattcg taaatgcatc actgaaaacc
      541 gaaataacct tttgtgcaga atagcttgta ggggttggag cagctggcat aacatatgag
      601 aaagctaatt ctcctaagtt cgtggacgaa ctagaaccat ttaccgcagt agtatgtaat
      661 ctataaaact tataggcagt agagttcgca aaactatatg tatttacagt ggatgttgta
      721 gcaaaagttt gagctgtttg cgtatccaga gtagtccatc cattagctac cgtatcattt
      781 gaggctttaa ttgtccaatc ttttgggtca cgtccagtat tttcaccaga agtgagtgca
      841 atcgtattat ataatcttgc actagggtaa acaaaggtta aatacgacac cgttttagtc
      901 aatactttcc aatttgtagt agaaatacca tccgttaaat tatcaagaga atatccagca
      961 gctacagaag gagatgaaat tacagaatat tctgaagttg gtgtagtgga caaaactgca
     1021 atcggactgt ttgatgcggt atttcctgca gcatctttag ccgttaccga gaaagtgtaa
     1081 gcagttgcag cagttaaccc ggaaatagta tatgattttt gaattccgga tataccagtg
     1141 gtagttaaaa cggtaggtgt cgaaccataa gaaattgtat agttaatagc accaccatta
     1201 ttgtctgttg catttaataa taattctgca ctacttttag tcaacactcc cagagtagct
     1261 gtgaataaag ttggcgcttg ggtatcgagt gaagccccgc aatcacttcc tactgtataa
     1321 gtaaatgttt tggtaacagc cattcctccg gagtaggcaa atttacaggc aacactaaag
     1381 gtagcaccaa caatttgtcc ggtaaatgtc tttgaaaatt tctgacccga aaccaagggc
     1441 attgaagtct cagcaaaatt tggattataa gtccaggcat aagctacaag tcccgattta
     1501 gaatctaaac actcacatgt aaatgtcaca tcggttccgc tggttgtaaa ggcataattg
     1561 taccccactg taaatgtgcc ctgagcagct tcggttgacg taccagcaca ttcattactt
     1621 tgcgcatttg ccatgttccc gctagctaca atagcagcta ttaagagaaa taatcgagta
     1681 atttttttca tttttttcat tttttatatt agtatttaaa gctcattgta gtcttattcc
     1741 gaatgcacaa ttaatttctg tccaattgat attttcggat gaaaatgaat atgacaaaaa
     1801 taggttacaa ttcaaaactt atgaaaaaaa ttgcctcaca aaaatacgtt tcagatcaag
     1861 ataaggtact caaaaatacg tcatattagt ttttagtatg ctgttttaca gatatttaaa
     1921 aaatagtatg ttgttaaaca tatttcaact ctaatttcaa ctaaagaaaa tgtgctaaca
     1981 ttgaactcta tttaaataaa aaatcaagcg attactaatt cttaaagtta tgaaaaggta
     2041 tttttggtgc ttattattgt caagtgcagc aatgctgtcc tatgcaaacc aaccaatggt
     2101 tcgaaatttc acgcgaaaca actacaaatc cggcacacaa aactgggcaa ttgcacaaga
     2161 tgagtcgaat tcaatgtatt ttgccaataa caatggcttg cttcagttcg atgggaaaaa
     2221 ctgggctacg tatccgatta tcaatggaac aaatgtgcga tcggttatca gcaccaaaga
     2281 tggacggttc tatgcatcca catttaatga ctttggctat tttcagaaac aaaaagaatc
     2341 acagcgtttt gaatatcatt cattaataaa caagtcaggc gtaaatccca aaagttcgaa
     2401 cgagctatac actatttatc agggcgataa gaaaatctat ttccagtccg agaaatctat
     2461 ttatgaatat gatggcaata aaataacacc atatactttt agctataaaa ttgatgaatc
     2521 tgcaatagta cataatattt tatttgttac cagttcccaa agtggagcct ttatgcttaa
     2581 tggtaagata tttatccgta ttccgggctc tgagattctg ataaacaaga aagtagtttc
     2641 tattttgccg ttcaatggta ataagatatt gtttgtcacc agtttcaacg gagcattttt
     2701 atatgatgga gaaaatattg ttccttataa gacaggaatc gaagactttc tgatgaaaaa
     2761 ccaggttttt tgtgccacta ccaatggccg gcaactcgtt ttcggaacag tgcagcgtgg
     2821 tatagccgta cagaatattg ccgatggaag cgtaatttat gtaaacacat ataccggatt
     2881 gcaaaataat accgtactaa gtgcagcatt cgataaccag cagaatctct ggttggggct
     2941 tgacaacgga attgactacg taatgttgaa cagcccgata ttgaatatct tcggcaccaa
     3001 caatttatat ggagccggtt acacgtcttt tttgaaaaac aatatactct atttcggtac
     3061 taaccaggga ctttatacta caaactaccc tctgccaaac actccattgc cgatgcaact
     3121 gagactgatg caaggaatgg aaggacaggt ttggtgcctg aatgaaattg acaacacact
     3181 attctgcggc gacgaccagg gtgcatttat cattaacgga gacaaaagtg agcgaattca
     3241 gggattaccg ggaacatggt cgtttaaacc cgttcgcaac catcccgatt tgattttagg
     3301 ttgttcgtac cagggactat ttatcctgaa gaaaacggca gaaaaatgga aattcgccca
     3361 tttcatcaag ggtaagttca acgagtcgag tcctatgttc gaagaagact ctgatggcac
     3421 cctttggttc agccattggc aaaagggact cttccggctg catctcaacg ctgcagttga
     3481 cagcataacc cgcattgatt tgtacaacga gaaaaaagga tttccaagca accgcaacaa
     3541 tacattattc cggatagata atgaaattgt attttcatcg gagcgtggat tctacaagtt
     3601 caataaaaaa accgacaaaa tggatccgta cgagaagtgg aacaaattgt tcggtacgtt
     3661 gccaagttat atgcggttgc acgagaataa aaacggtgat gtttggtgcg tttcaggccg
     3721 gtttatcgga ctcgcaaaaa agcaagccaa taaatcgtac agaatggatt cattgaccta
     3781 ccgtattctt cagcctaaaa ttattaccgg tttcgaacat ttctactgca ttgacaacaa
     3841 taacattatc atgagcaccg aagacggttt cagttggatc gataccagac gtgaaatagt
     3901 ttcgaaaagc aatttcaagg tttttctgca caacattatt gttacaaatg ataagttatc
     3961 gggcaacaaa cgcatatttg gagccaacaa tacccgggaa agttttaaac atagccaaaa
     4021 ctccttacgc tttgaattta ttgctcccga gtatcgcaac gaagggatgg ttcaatacag
     4081 ctacatgctc gagaattacg atgattcctg gtcggagttt agcagcgaca atgtaaagga
     4141 atatacacaa ttgccaagag gtcattatgt tttcaaagtg cgggcacgca gcattctgga
     4201 atcgaaagaa gccgtttgca cctactcgtt caccatttta cctgcctggt acgaaacgca
     4261 gattgcattt ataatctacg ccatcctgtt tattctgctg gttgtggggt tggctatatt
     4321 tgtaaataaa acctcgaaaa aaggtgcact tgaaatggaa aaacgcaaag aactggaaat
     4381 tcaggagcaa caaaaacaat ttgaggcaga aacttcggca aagaaaaagg agatcaagga
     4441 acttaaaaac caacaactcc aatacgaact tcgccacaaa tctcaggagc tggcaagctc
     4501 taccatgaac ctgattcgca aaaatgaaat attactcgaa gtgatggatc atatcaccaa
     4561 ggtgacaagc gatattaaaa cgaattccga tacaggggtt gttttgtcac gacttggcaa
     4621 aatggagcga aatatccgcc agaatattga aaacgacaat aactggaagc gcttcgaaga
     4681 gaacttcgat ctggtttacg agaactacct gaaacgcttg ggcgaaatgt atccgggact
     4741 aaatgtcagc gataaaaagc tttgcgcata ccttaaaatg gatttgtcgt cgaaagatat
     4801 tgcaccgctg ctgaacatgt cggtgcgcag cgtggaaaca aaccgctaca ggctgcgcaa
     4861 aaagatggga cttgacagag atgtgaacct gagcgagttt cttcagcggt tttgacagcg
     4921 ggggaatact aaaaacatct gtctgtattt gcacttgtac catcttcatt tccatacaaa
     4981 tcagccatat taaaaatgtg tatgttctgg tatgtatggt tttgaatcaa cgcaaagcct
     5041 catttcgtta tgtatcgggg taggttctgg cgggtttaca gttcaaaact ctttcaatct
     5101 atagcttaaa aaaaaggatg cccttttgga cacccttttt ttgtttcgga aattctgttg
     5161 tcagaatttt atttgtttac tactttcact acttcgtcag ccgattttac tacgtaaaca
     5221 ccttgattaa gtgtcagttt cttgattgat tgcacattaa actgagccac gcaagctccg
     5281 gcaatgtcat aaactcttac aaatgtaggt ttgttagtaa tgattgtcaa ttgacctgca
     5341 ttagaactta ccttcagatt atttaccaca ggaacataag aagttgcggt agacggattc
     5401 tgaggagcaa aagcgccggt attgttaatt gccacatact taatctcaac atcggtatct
     5461 tctacgcctt gtgatttacc gaagaacagg taagattcac cattagcctg ataaggtgca
     5521 aaagtgcttt cttcataaag agcaatatc
//
LOCUS       DATDNM010000150         2758 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_127506, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000150 DATDNM010000000
VERSION     DATDNM010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127506"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..1128
                     /locus_tag="VI413_02555"
     CDS             82..1128
                     /locus_tag="VI413_02555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913531.1"
                     /translation="MPQELWGYRFNDGKFYISKKIEGHELGKPVFLEFLIHGKINVYH
                     LQDDNDRYFVEKDSTLYELKNTEVLKYVNSTKHLINRNEYIGILTVLLNDADMQPDIV
                     NCNLEAKSLIKIAKEYHEKVCSGEKCIIYEKSIKPIHVNKSVHAGVSINTINFGDEII
                     SNYGLGSLFGFRLELENALNWQENLSIVLDFTLQRLTNYKLRANDNYMSYRIKYNNVD
                     YTLSNNREPYMTIRQSLDVNIKTIALKIPFSINYTFSKGKIRPYIGTGIENTFIVSQN
                     NDFIYKHFYNEFNRSIPVYQVGVVEKAGSKYMLKNNQFIYAELNYELNKSLNINQFLR
                     FTNNLFSITFGYAF"
     gene            complement(1347..>2758)
                     /locus_tag="VI413_02560"
     CDS             complement(1347..>2758)
                     /locus_tag="VI413_02560"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEY6913532.1"
                     /translation="VLNFSLDNGGTIIQWDDAKNVNQQWYLEYAEDGWFYIRNRNSAK
                     CMEVAVPYITEGASIQQRDKNGGTNQQWRFLPVGTPVEFSAPAAPANLIATENAVSIR
                     LDWTANTDADLAGYTIFRSELAGGPYNTIARNVKSNSFVDNTTTAGKPYFYSIKAVDN
                     SLNRSAYSNEVSAIATGTKDLVVNLRFDGTTQDSTINLNHSATYGGTSFVAGKVVQAI
                     ALNGTTGFVQLPATVANSQEITIAAWVYWNGITSWQRIFDFGNDQNQYMFLSPRSGSG
                     VMRFGIKNGGTEQGLTAAVLPYVKWTHVAVTLGATGARMFVNGLQVAESNTVTIRPSD
                     FKPVLNYIGRSQFSDPLFNGSIDDFRVYNYALSANEIAQIAGIVSEDVSGVDYNKDLS
                     IWPVPANDVIHVNYAAETNTGLSTVSVFNMDGRLVISKEINNANDSELNVSGLPTGIY
                     MLKLINREESLTRKILIKH"
BASE COUNT          900 a          534 c          514 g          810 t
ORIGIN      
        1 tttgttgata accgagacag caaaagtaat tcgaaacaat gctattttaa gaaagaagaa
       61 aagggagaga cacaaatata tatgccacaa gagttatggg gctaccggtt caatgatggt
      121 aaattttata tctcaaaaaa gatcgaaggc catgaattgg ggaaaccggt ctttttagaa
      181 tttcttattc atggcaaaat caacgtttac catcttcagg atgataacga caggtatttt
      241 gtagagaaag actcaactct ttatgaatta aaaaatacag aggttcttaa atatgtgaat
      301 tctacaaaac atttgatcaa tagaaatgaa tacattggaa ttctaaccgt attgcttaat
      361 gatgctgaca tgcaaccgga tatagttaat tgtaatcttg aagctaaatc cctgataaaa
      421 atcgccaaag agtaccatga aaaagtctgt tcaggtgaga aatgcataat atatgagaag
      481 tctataaaac caattcatgt caataaaagt gtacatgcag gtgtttcaat aaatacaata
      541 aattttggag atgaaataat ttccaattat ggcttaggca gtttattcgg attcaggctc
      601 gaactggaga atgcactgaa ttggcaggag aacctcagta tagttttaga tttcacgtta
      661 cagaggctta ctaattataa attaagggca aatgacaact acatgagtta tagaataaaa
      721 tacaataatg tagactacac gctgagtaac aatagagaac catatatgac cattagacag
      781 agcctagatg taaatataaa aacaatcgcg ttaaaaattc cattttcaat aaattataca
      841 ttttcaaaag ggaaaatcag gccatatatc ggcacaggca ttgaaaatac gtttattgtg
      901 agtcaaaata acgacttcat atataaacac ttttacaatg agtttaacag gtcgattcct
      961 gtttatcagg ttggagtggt tgaaaaagcc ggcagtaagt atatgctgaa aaacaatcaa
     1021 tttatatatg cagaactgaa ttatgaatta aacaagagcc tcaatataaa tcaattttta
     1081 agatttacca ataatctatt ttcaatcaca tttggttatg ctttttgagt tatatttttt
     1141 ggagtgtgta attatgctac aaatatcttc gcatgcacct tactaaaatg aaatgaagat
     1201 aattccattt cacggggcaa tgatttcttt cattaaatag tcaagactca cactggtaaa
     1261 caaaaaaacc ttttcctaaa tccacttaat tcagatggat tttggaaaag attttttctt
     1321 tatagcatcg ttaaagaact gatttgtcaa tgtttgataa gaattttccg ggtcaatgat
     1381 tcttccctgt tgatcaactt tagcatgtag atgccggttg gcaagcctga aacattcagt
     1441 tctgaatcat tggcattatt aatctcttta cttattacca acctgccgtc catattaaac
     1501 acagaaactg ttgacaaacc ggtattggtt tctgcagcat aatttacatg gataacatca
     1561 tttgcaggca caggccatat agacaagtct ttgttataat caacacctga tacatcctct
     1621 gaaacaatcc ctgcaatctg agcaatttcg ttagccgaca aagcatagtt gtacaccctg
     1681 aaatcgtcga tagaaccatt gaacaaagga tcggaaaatt gactgcggcc aatatagttc
     1741 aataccggtt taaaatccga cggcctgata gtaacggtat tggattcagc cacctgcaac
     1801 ccattgacaa acatacgtgc tccggttgca ccgagtgtca ccgccacgtg cgtccatttt
     1861 acataaggca atacggccgc tgtaagcccc tgttccgttc caccattttt tattccaaaa
     1921 cgcatgactc cggaacctga ccggggcgat aaaaacatat attggttctg gtcatttccg
     1981 aaatcgaaaa tgcgttgcca cgatgtgatg ccgttccagt aaacccatgc tgcaatggta
     2041 atttcctgac tgtttgccac agtcgccggg agctgcacaa aaccggttgt accattcaat
     2101 gcaatggcct gaacaacttt tcctgcaacg aacgaagttc cgccatacgt tgcgctgtga
     2161 ttcaggttaa tcgtgctatc ctgagttgtt ccatcaaacc gcagattaac tacaagatct
     2221 ttagtgccgg tagcaattgc agaaacttcg ttagaatatg cagagcgatt cagtgagttg
     2281 tccaccgctt ttattgaata aaaatagggc ttaccggcag tggtggtatt gtcaacaaaa
     2341 gagtttgact tcacgttgcg tgcaattgta ttgtaaggac ctccagccaa ttcagagcga
     2401 aaaatcgtgt atccggctaa gtctgcgtct gtgttcgcag tccagtccag tcgaattgat
     2461 acagcatttt cggtagcaat aagatttgca ggtgcagccg gtgcactaaa ctccacgggt
     2521 gtacccactg gaagaaagcg ccattgttgg tttgtaccac catttttgtc cctttgctga
     2581 atacttgctc cttcggtgat atatggaact gcaacttcca tacatttagc gctatttctg
     2641 ttccgaatgt aaaaccaacc atcctcagca tactcaagat accactgttg atttacattt
     2701 tttgcatcat cccactgaat gatagtcccc ccgttatcca gcgaaaagtt taaaacgt
//
LOCUS       DATDNM010000151         5321 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_20354, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000151 DATDNM010000000
VERSION     DATDNM010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5321
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20354"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..304)
                     /locus_tag="VI413_02565"
     CDS             complement(<1..304)
                     /locus_tag="VI413_02565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913533.1"
                     /translation="MVKRHQFTGYIFSEIHRLLLVFNYITVRRLINLCRLRFSYLLST
                     IREQKISDLSPSFVSVETSNYCNLHCPECPVGRSQTPKTEHAHFDLTLYKKLIDEQK"
     gene            483..2186
                     /locus_tag="VI413_02570"
     CDS             483..2186
                     /locus_tag="VI413_02570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004296527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6913534.1"
                     /translation="MRKQLFFAVSLVLALVLSSCAKDMTALDPSMFKCNPNPLEVKGG
                     KIDATITGTFPVKYFTKNATVTVTPVLKFEGKEAKGTPVTFQGEKVVGNDKTISYKTG
                     GTYTMNASFAYVPEMAKSELFLEFNVVTKKKTYQIPSVKIADGVIATSQLVSTNAGEI
                     APVIVADKFQRVIQEMQEADIKFLIQQSNLRKSETKSGDIANLTKKIKEVKESQNKQV
                     SNFEVAGYASPDGGLKLNTNLAEKREAVTVDFLNKELKKLKTSIKLDSKFTAEDWAGF
                     QDLMEKSNIQDKQVILRVLSMYTDPEQREREIKNLSVAFKAIAEEILPQLRRSRLKLT
                     VDVTGKSDAELTKLAIEDPSKLTVEELLFAATLTNDLNAKAALYQKVIEIYPTDARGY
                     NNLGTVKFQQGNADDAARYFAKALEIDSKSADINYNAGVASFAKGDVAKAEEFFGKAA
                     GTNGNLSQALGSVSTVKGDYAKAKTYFGSTATNNAALAQILTADYNGARKTLAAVAQP
                     NAITSYLGAIIGARTNDRDAVFSNLKAAVKQDSSLAAKAVKDIEFSKFVTDETFLSIV
                     K"
     gene            2437..2796
                     /gene="rsfS"
                     /locus_tag="VI413_02575"
     CDS             2437..2796
                     /gene="rsfS"
                     /locus_tag="VI413_02575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEY6913535.1"
                     /translation="MTENEQIVEKIVEGIQERKGKNIVVVNLTRLQDAPCSYFVICEG
                     DSNVHVNSVALSIKDWVRDQIKVKPYATDGFQNCEWIAMDYGQIIVHVFQRTTRAFYD
                     IEHLWADAELKRLEDIL"
     gene            2887..5022
                     /gene="ftsH"
                     /locus_tag="VI413_02580"
     CDS             2887..5022
                     /gene="ftsH"
                     /locus_tag="VI413_02580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEY6913536.1"
                     /translation="MENKTPNPNPLKSAGKSPKFNISWIYGIIIFTLMGLFFFGENTP
                     SKDVPFTTFKDYVLRGMVEKVNVYSSKSLIEAKLIDYTKTPVDSVFLQRAFGDNYKSF
                     AYNEKALRDSLTKKDNQTLKKVYGDKYETFAKDRIITVKVPADEVSRFLDSAEDKYGI
                     KVGVSYEDSRNYVDLFLYSILPILLLVFFFVFMNRRMSGMGGGAGGGGIFNVGKSKAQ
                     LFDKGDTTNKVTFKDVAGLAEAKQEIEEIVSFLKNPAKYTELGGKIPKGALLVGPPGT
                     GKTLLAKAVAGEADVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKAPCIIFIDEID
                     AVGRARGKNPNMGSNDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAG
                     RFDRQIHVDLPDVHERKQIFNVHLRPIKINETVDVNFLARQTPGFSGADIANVCNEAA
                     LIAARKNKSFVEKQDFLDAVDRIIGGLEKKSKITTVAEKKSIAYHEAGHATISWMTEH
                     ANPLVKVTIVPRGEALGAAWYLPEERQLTNREHMLDEMCSTLGGRAAEEVFLHQMSTG
                     AINDLERVTKRAYAMVAYFGMSDKLANMSYYDSTGNSDYGFTKPYSEKTAELIDSEAK
                     KIVADEYERAKKILTENTVGHNTLAELLIEKEVIFAEDLERIFGKRPWTSRNDELMAQ
                     NGNVDVLEEPTVTPANTELSEKTSDENAE"
     gene            5012..>5321
                     /locus_tag="VI413_02585"
     CDS             5012..>5321
                     /locus_tag="VI413_02585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913537.1"
                     /translation="MLNNSRQEILQRIAAAEKRRLASVTVISEKSPYNIYKPILPDSV
                     TCFKNELEAINGQCILCENESELYIKLRNFVSDHKFPYLFCRDSYISEQLEKNKITFS
                     T"
BASE COUNT         1846 a          965 c         1014 g         1496 t
ORIGIN      
        1 atttttgctc atcgataagt tttttatata gtgtcaaatc gaaatgcgca tgttcggtct
       61 taggagtttg acttctgcca accggacatt caggacaatg taaattgcaa taatttgaag
      121 tttcaacaga aacaaatgaa ggcgataaat cacttatttt ctgttctctt attgttgaga
      181 gtaaataaga aaaacgtaat ctgcaaagat taattaatct cctgacagtt atataattaa
      241 aaacaagaag taaccgatgg atttcactaa aaatatatcc tgtaaattgg tgtcttttta
      301 ccatgaaaaa gtgaattaat agcttgcgag agtggcataa attgaatttt agcacattct
      361 taacaaaaaa ttgtcaaaat caaatgcaaa gtaagataaa ttcatcgaaa gattgtatat
      421 ttgtatccaa attgtctaaa aaaagaaaaa caaataatta tttataacaa aaacacaatt
      481 ttatgagaaa acaattattt ttcgcggttt cattggtact tgcgttagtc cttagttcat
      541 gtgctaaaga catgactgca ttggatccaa gcatgtttaa atgtaatcct aacccacttg
      601 aagtaaaagg tggtaaaatc gatgcaacta ttacaggaac tttccctgtt aagtacttta
      661 caaaaaatgc tacagtaact gtaaccccgg ttttgaagtt cgaaggtaaa gaagcaaaag
      721 gtactcccgt tacattccag ggtgaaaaag ttgttggcaa cgacaaaact atctcttaca
      781 aaacaggtgg cacttacaca atgaatgctt cttttgcgta tgttcctgaa atggctaaat
      841 ctgagctttt tctagaattc aatgtagtta ctaaaaagaa aacttaccaa attcccagcg
      901 taaaaatagc cgatggtgtt attgcaactt ctcagttggt atcaacaaat gcaggcgaaa
      961 ttgctccggt tatcgttgcc gataaattcc aacgcgttat tcaggaaatg caggaagctg
     1021 atatcaaatt cttgatccaa caatctaatt tgcgtaaatc tgaaactaaa tcgggagaca
     1081 ttgcaaacct gactaaaaaa atcaaagaag taaaagaatc tcaaaacaaa caagtttcaa
     1141 actttgaagt tgctggttat gcatctccgg atggtggact aaaattaaat acaaatcttg
     1201 ctgaaaaacg tgaagcagtt actgttgatt tcttaaacaa agaattgaaa aaactgaaaa
     1261 cttcaatcaa gcttgattct aaatttacag cagaagactg ggcaggtttc caggatttga
     1321 tggagaaatc gaacatccag gacaaacaag ttattttacg cgttttgtca atgtatacag
     1381 atccagaaca acgcgaacgt gaaatcaaaa atctttcagt tgccttcaaa gctattgccg
     1441 aagaaatttt acctcaacta cgtcgttctc gcctgaaact gacagttgat gtaactggca
     1501 aatcagatgc tgagcttaca aaacttgcta ttgaagatcc atctaaactt acagtagaag
     1561 aattactttt cgcagcaact ttgactaacg atttaaatgc taaagccgct ctttatcaaa
     1621 aagtaattga aatttaccca acagatgctc gcggatacaa caacttaggc acagttaaat
     1681 tccaacaagg aaatgcagat gacgcagcac gttattttgc aaaagcattg gaaattgact
     1741 ctaaatctgc tgatattaac tacaatgcag gagtagcttc atttgctaaa ggcgatgtag
     1801 caaaagctga agaatttttt ggtaaagcag ccggaacaaa cggtaactta agccaggcac
     1861 taggaagtgt tagcacggta aaaggtgatt atgcaaaagc aaaaacatat tttggctcaa
     1921 ctgctacaaa caatgcagca ttggctcaaa tccttacagc tgattacaat ggtgcacgca
     1981 aaacattggc tgcagttgca caaccaaatg caataacttc ttatttaggg gctatcattg
     2041 gtgctcgcac aaatgatcgt gacgcggtat tcagcaacct taaagctgca gtaaaacaag
     2101 atagttcatt ggctgctaaa gcagttaaag atatcgagtt ctcaaaattt gtcactgacg
     2161 aaactttcct tagtatcgtt aaataattaa tactactata tataaaaaaa tccgatgcaa
     2221 aaaatgcatc ggattttttt atatacagta gtctgagttt ctaaatcaaa catggattaa
     2281 tttaattcca gaataaacta ctccgacttt aatttaaaaa atttaatagt tttaaagaac
     2341 attataactt attcccgcaa acaacatttt cattttcggg catttaagct tatctttgta
     2401 tccattttca aaaaacaaat ataagaactt aacataatga ctgaaaacga acaaattgtt
     2461 gaaaagattg ttgaaggaat acaagaacgt aaaggtaaga atattgttgt ggttaatctg
     2521 acccggttac aggatgcccc atgcagctac tttgtaattt gtgaaggcga ctctaatgtg
     2581 catgtaaatt ctgttgctct ctccattaaa gattgggtcc gcgatcaaat taaagtaaag
     2641 ccttacgcaa ccgatggctt tcaaaactgc gaatggattg caatggatta cggacaaatc
     2701 attgtacatg tttttcaacg cacaacccgt gcattttacg acattgaaca tttgtgggct
     2761 gatgccgaac tgaaaagact ggaagatata ctctgagttt ttcagaatta gttggcaatt
     2821 caaaaaccaa atgctaattt ttttgtttta tctataaata actaataaga taacaattga
     2881 ataagaatgg aaaataaaac accaaatccg aatccgctga aatctgccgg aaaatctcct
     2941 aaattcaata tctcctggat ttacggcatc ataatattta ctttaatggg attattcttc
     3001 tttggagaaa acaccccatc caaagatgtg ccatttacta cattcaagga ttacgtgtta
     3061 cgtggaatgg ttgagaaagt taatgtttac agttctaaga gtttaataga agcaaaacta
     3121 attgattata ctaaaacacc tgttgattcg gtttttcttc aacgggcatt tggcgacaac
     3181 tacaaaagct ttgcttataa cgagaaagca ctgcgggact cactaacaaa aaaagacaac
     3241 caaacactca aaaaagtgta tggagataaa tatgaaacat tcgctaaaga ccgtataata
     3301 acagttaaag ttcctgccga cgaggtatct cgttttcttg attcagcaga agacaaatac
     3361 ggtataaaag ttggtgtttc atatgaagat agccgcaatt atgtcgatct gttcctatat
     3421 agcattttgc caatcctgct gctggttttc ttctttgtat tcatgaaccg ccgcatgtct
     3481 ggcatgggtg gaggtgcagg tggcggaggc attttcaatg tcggcaaatc gaaagcacag
     3541 ttgtttgaca aaggcgacac taccaataaa gtaacattta aagatgtagc cgggttagct
     3601 gaagcaaaac aagaaattga agaaatagta tcatttttaa agaaccctgc taaatacact
     3661 gaacttggag gaaaaatccc caaaggagct ttgcttgtag gccctccggg aacaggtaaa
     3721 accttgctgg caaaagcagt tgcaggcgaa gcagatgtac cgtttttctc tatgtcaggt
     3781 tctgactttg tagaaatgtt tgttggtgtt ggagcctccc gtgttcgcga cttgttccgt
     3841 caggctaaag aaaaagcacc ttgtatcatt ttcattgatg agattgatgc agtaggtcgt
     3901 gcacgtggga aaaacccaaa catgggaagt aatgatgaac gtgaaaacac attaaaccaa
     3961 ttactgaccg aaatggatgg ctttggttca aatagtggcg tgattatact tgcggcaaca
     4021 aaccgtgccg atattctgga caaagcattg ttacgtgccg gacgttttga ccgtcagatt
     4081 cacgttgacc taccggatgt tcatgaacgt aaacagattt tcaacgtaca tcttcgtcca
     4141 atcaaaatca atgagactgt cgatgtcaac ttcctggccc gtcaaactcc cggtttttca
     4201 ggagcagata ttgctaatgt atgtaatgag gcagcactga ttgcagcccg aaaaaacaaa
     4261 tcgtttgttg aaaagcaaga cttcttggat gctgtggatc gtataatagg tggattggag
     4321 aaaaaatcaa aaatcacaac agtggcagaa aagaaatcaa tagcatacca cgaagcaggt
     4381 cacgcaacta tcagttggat gaccgaacat gctaatccac ttgtaaaagt aacgattgta
     4441 ccacgcggtg aagctttggg tgcagcctgg tatcttcctg aagaacgcca gttgaccaat
     4501 cgcgaacata tgctagatga aatgtgctca actcttggag gacgtgctgc tgaggaagta
     4561 tttctgcacc aaatgtcaac cggcgctatc aatgatcttg aacgcgtgac taaacgtgct
     4621 tatgccatgg ttgcgtattt cggaatgagt gacaagttgg ccaacatgag ctactatgat
     4681 tcaaccggca attcggatta cggattcaca aaaccataca gtgaaaaaac agcagagcta
     4741 attgattctg aagcaaagaa aattgtagcc gatgaatacg aaagggcaaa aaagattctt
     4801 actgaaaata cagtcggaca caatacatta gcagaattac ttattgaaaa agaagtgatt
     4861 tttgcagaag acctggaacg catttttgga aaacgtccat ggacatccag aaatgatgaa
     4921 cttatggctc aaaatggaaa tgttgatgtt ctggaagaac ctacagttac acctgccaat
     4981 acagaattat cagagaaaac ttctgacgaa aatgctgaat aattcccgtc aggaaatatt
     5041 acaacgaata gcagccgccg aaaaaaggcg gcttgcttca gttactgtta tctcagagaa
     5101 gtcaccttat aatatttaca aaccaatttt gcccgatagc gtaacttgct tcaagaatga
     5161 gttggaggcc attaatggcc aatgcatttt gtgtgaaaac gaatcagagt tatatatcaa
     5221 actccggaat tttgtgtccg accacaaatt tccatatctt ttttgccgcg attcttacat
     5281 ttctgaacaa ctagaaaaaa ataaaatcac tttttcaact g
//
LOCUS       DATDNM010000152         2682 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1622010, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000152 DATDNM010000000
VERSION     DATDNM010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2682
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1622010"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..463)
                     /locus_tag="VI413_02590"
     CDS             complement(<1..463)
                     /locus_tag="VI413_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6913538.1"
                     /translation="MNLEYFIAKRIHFQQGKKNVSRPAVRIATIGIALGLTVMIISVA
                     VVIGFKREIRNKTIGFGGHIQITNFDNNNTYEMNPIKADNALTKKISAIDGVKHVQPF
                     VTKPGIIKTDAEFQGIVVKGIDKNFDWNFFKSNMVEGNTLDLTGKAPSNQVV"
     gene            complement(625..1824)
                     /locus_tag="VI413_02595"
     CDS             complement(625..1824)
                     /locus_tag="VI413_02595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005854538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEY6913539.1"
                     /translation="MPHTSQRGQAMPESPIRKLVPLADKAKARGIKVYHLNIGQPDLK
                     TPQVALDAIRNIDRTVLEYSPSDGIKSLRTKLAAYYHTFNIDVTEEDIIVTTGGSEAV
                     NFAFMSCLDPGDEIIVPEPAYANYTAFAIAAGAVVKPVVSTIEEGFALPHVDKFEELI
                     TPKTKGILICNPNNPTGYLYTRAEMNKIRDLVKKYDLYLFSDEVYREFCYTGAPYISA
                     FHLDGIEENVVLIDSVSKRYSMTGVRIGALVTKNKEVRKNVIKFCQARLSPPLLGQIA
                     SEAAMDTPADYMLEMYNEYVERRKFLIDGLNRIPGVYSPIPMGAFYTVARLPIDDADK
                     FCAWLLSDFEYEGYTVMMAPASGFYTIDGLGKDEVRIAYVLDKEDLKHALVVLGKALQ
                     AYPGRTI"
     gene            complement(2067..>2682)
                     /locus_tag="VI413_02600"
     CDS             complement(2067..>2682)
                     /locus_tag="VI413_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6913540.1"
                     /translation="IRYSGENDAKAYTAGVDFKLFGELVPGADSWINLSLMDSKENLL
                     NDSYLKKSFDSDGKVVSSETVYPGWLPRSNEQRYVFSMMFQDYLPNNPKYKMHLKFIW
                     SDGLPFGAPRNLQYRNFWRAPDYRRVDIGASRALISGTDRIMDKPCFKHVKSIWLNVE
                     VFNLLNFSNVNSHYWVSDIYGQQLAVPNYLTSRQFNLKIMVDLK"
BASE COUNT          800 a          591 c          511 g          780 t
ORIGIN      
        1 gaaccacctg attactcggc gcttttcctg tcagatcgag ggtattccct tcaaccatat
       61 tggatttaaa aaaattccag tcgaaatttt tatctattcc ttttacaaca attccctgaa
      121 attctgcatc ggttttaata atacccggct ttgtaacaaa gggttgaaca tgtttaaccc
      181 catcaatagc agaaattttt ttcgtcaagg cgttatctgc cttgatcgga ttcatttcat
      241 aggtattgtt attatcaaaa ttggtaattt gtatatgtcc tccaaaacca atcgtcttat
      301 ttcggatttc gcgtttgaaa ccaataacca ccgccactga aattatcata accgtcaacc
      361 ccagcgcgat accaatggtg gcaatacgaa cggcaggacg agaaacattc ttcttgccct
      421 gctgaaaatg gatgcgttta gctatgaaat attctagatt caaaatattg atttaacgag
      481 gtgataatag gttgatgtgg taatgtgata attttttgat ttgataattt tttaaattag
      541 taaatctgta aacagattaa tcaatgtagg aaacgattcc atcatcacca catcatcaca
      601 tcaactaatc atcacattaa tgaattaaat agtccgtccc ggataggctt gcagtgcttt
      661 tccaagtaca accaacgcat gtttcaggtc ttctttgtct aacacgtaag caatgcggac
      721 ttcgtctttt cccaaaccat caattgtgta aaagccggaa gccggagcca tcatcaccgt
      781 gtaaccttcg tactcaaaat cggaaagcaa ccacgcacag aatttatcgg catcgtcaat
      841 tggcaaccgt gccacagtgt aaaacgctcc cattggaatg ggtgaatata cgccgggaat
      901 acgattcagg ccatcgatca ggaatttacg gcgctccaca tactcattgt acatttcgag
      961 catataatcg gcaggagtat ccatagcagc ttcagaagca atttgcccca acaaaggagg
     1021 actcaaacgt gcctgacaaa attttatgac gtttttacga acctctttat tctttgtcac
     1081 caatgctcca atacgaacac cggtcatgct ataacgtttg gataccgaat caatcagcac
     1141 cacattttcc tcaatgccat cgaggtggaa agcagaaata taaggtgctc ctgtatagca
     1201 aaattcacgg taaacctcgt ccgaaaacaa atacaaatcg tatttcttta ccaaatcgcg
     1261 aattttgttc atctcggcgc gggtatacaa atatccggtc ggattgttcg gattgcaaat
     1321 caggattccc tttgttttgg gcgtaatcag ttcttcgaat ttatccacat ggggcaatgc
     1381 aaaaccctct tcgatagtag aaaccaccgg ctttacaacg gctccggcag caatggcaaa
     1441 agcagtgtaa ttagcataag ccggttcagg aacaatgatt tcatcgcccg gatcgagaca
     1501 gctcataaaa gcaaaattca ccgcttcaga accaccggtt gtaacaataa tatcttcttc
     1561 ggtaacgtca atattaaacg tatgataata agccgccaat ttggttctga ggcttttaat
     1621 tccatcactc gggctatatt ccaacacggt acggtcgata tttcgaatcg catccaacgc
     1681 gacttgcggt gtcttcaaat cgggctggcc gatattcaga tggtacactt tgattccgcg
     1741 tgctttggct ttgtcggcca gcggaaccaa tttacgaata ggcgattcgg gcattgcctg
     1801 cccccgttgt gaggtgtgtg gcatgttttt tagtttacaa tgaacagtta tcagtttgca
     1861 agtaaatgtt tcacttcgta actataaccg cgttttacat tatgatttga tggcgcaaaa
     1921 gtagtgaatt ttacccgaat atgaaagaat agtagatagt tttgagtttc gagttcttag
     1981 tttcaagact gttttgagtg aaatttgttc taaatgtctc tccactctga attcagaagt
     2041 cagaacatcc tgctgtgaac tacaaactat ttcaagtcaa ccattatttt cagattaaac
     2101 tggcggctgg taagataatt gggtacagcc agttgctggc cataaatgtc gctcacccaa
     2161 taatgggaat tgacattact gaaattcaag agattgaata cttccacatt cagccaaatg
     2221 cttttcacgt gcttaaaaca gggtttatcc attatacggt ctgttccgct aatcagggcg
     2281 cgggatgcac ctatatcaac ccgacggtaa tcaggggcac gccagaaatt gcgatattgc
     2341 agattgcgcg gcgcaccaaa tggcaaaccg tccgaccata taaacttcaa atgcatttta
     2401 tattttggat tattgggtaa atagtcctga aacatcatag aaaacacata tcgttgttca
     2461 ttggaacggg gcaaccaacc gggataaacg gtttccgaag aaactacctt tccatctgaa
     2521 tcaaacgatt ttttcaggta cgaatcattc aataaatttt ctttcgaatc cattaatgaa
     2581 aggtttatcc atgaatccgc accgggaacc aactccccaa acaatttaaa gtcaacacct
     2641 gctgtatagg ctttcgcatc attttcgccg gaataacgaa tc
//
LOCUS       DATDNM010000153         2640 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_874701, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000153 DATDNM010000000
VERSION     DATDNM010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_874701"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(369..1961)
                     /locus_tag="VI413_02605"
     CDS             complement(369..1961)
                     /locus_tag="VI413_02605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019539474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HEY6913541.1"
                     /translation="MKIKIYLIIIVLTIGLPVFGQNFILKPTDYKCYIDRFNEKDNEL
                     YKQYIPNDSAWNFLESNIPFLDCPDKNIELTYYFRWWTYRKHIKNTADGFIITEFLPQ
                     VYWSGKYNSINCAASHHFYEGRWLKDNKILADYANFWFKKGGDVRSYSFWVADALWAY
                     YQVKNDSVLVTGLLPDLVENYQKWEVGRMFQNMFIGRNADGLFSTVDDRDAMEMSIGE
                     NGKRPTINSYMYGDAQAISRIAHIVGNNQLELLYAAKADTLKKLILKNLWDKKANFFK
                     TLPYNKKELVSVREILGYTPWYFNFPNPNSGYEKAWEFIKSDKHFYAPYGLTTAERNH
                     AKFEISYEGHECKWNGPSWPYSTSVTLTAMANVINNYTQKSINTDDYFNQIKIFANAH
                     RRVDEKGNILPWIDEDLNPFTGDWISRTMLKQSGWQQEKGGEERGKDYNHSTFCDLII
                     SGLIGVRPQTDKTVIINPLVPIGVWDWFCLDNVYYHGKVLSIVYDKYGNKYNKGKGLM
                     CFVDGVLKGQATSLQKIVVSIQ"
     gene            complement(2409..>2640)
                     /locus_tag="VI413_02610"
     CDS             complement(2409..>2640)
                     /locus_tag="VI413_02610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913542.1"
                     /translation="IAIDVNGKLKITNDPNKVALISFPDNQIFYSQTLKTIKKLPKWE
                     PAMRGKKVVINYFMLAVLMDNGEISVQLINYN"
BASE COUNT          795 a          515 c          409 g          921 t
ORIGIN      
        1 cataagtcaa ttaggttctg catctttttt cttccatgtt atgatgttgg aaacactaaa
       61 aaacagtgca gcagttataa taatataata gtgtccatta tttaaccaac tcatattgct
      121 ataatctaac ttaatgataa atactatcgc aattaataga cctccaataa ttccagcaac
      181 tctaatttta ttcatttgta ctattttaag ggttaatgat aattgtgact taatgttttc
      241 ggtcgtagtt tggttcttgt agtcgttttt ttcagtccga ataggtgaat agcttatcaa
      301 aaccaaatac tttctttttt tcgcttcaaa gtcgaactgc tgatacattg ctggtgattg
      361 tattatattt actgtattga aacgacaatt ttctgcaaac tggtcgcttg tccttttaat
      421 acgccatcaa caaagcacat aagtcctttc cctttgttat atttgttacc atacttgtca
      481 taaacgatgc ttaatacttt gccatgataa taaacattat ctaaacaaaa ccagtcccag
      541 acaccaatag ggacaagagg attaataatt acggttttgt ctgtctgcgg acgtacacca
      601 attaaacctg aaataataag gtcacagaac gttgagtgat tataatcttt accacgctct
      661 tcaccgcctt tttcctgttg ccaacccgat tgtttcaaca ttgtacggga aatccaatcg
      721 cctgtgaatg gatttaaatc ttcatcaatc cagggtaaga tattcccttt ttcatcaacc
      781 cgacgatggg catttgcgaa tattttgatt tgattaaaat aatcgtctgt gtttatgctt
      841 ttctgagtgt aattatttat gacattcgcc atggcagtta gtgtaacaga agtggaataa
      901 ggccaacttg gaccattcca tttacactca tgtccttcat atgatatttc aaattttgca
      961 tgattgcgtt cagctgttgt tagtccgtaa ggagcataaa aatgtttgtc agatttaata
     1021 aactcccagg ctttctcata tcctgaattt ggattgggaa aattaaaata ccacggggtg
     1081 tatcctaaaa tttctctaac cgaaaccagt tcttttttgt tgtaaggcaa tgttttaaag
     1141 aagttggctt ttttatccca caaattttta agaataagtt tcttcagagt atctgctttt
     1201 gcagcatata acaattctaa ctgattattt ccaactatat gtgcaattct ggaaatcgcc
     1261 tgagcatcgc cgtacatata agaattaata gttggtcgtt ttccgttttc cccgatagac
     1321 atttccatgg catcgcggtc atctacagta ctaaacagtc cgtcggcatt tcttccgata
     1381 aacatattct gaaacatccg gcctacttcc catttttgat agttttcaac caaatcaggc
     1441 aataaccctg taaccaacac agaatcattt tttacctgat aatatgccca aagagcatcg
     1501 gcaacccaaa agctgtagct tcttacatct cctccttttt taaaccaaaa atttgcatag
     1561 tcggcaagga ttttattgtc tttaagccat cgaccttcat agaaatgatg ggaagcagca
     1621 caattgatag aattatattt tccggaccag taaacctgag gtagaaattc tgtaatgata
     1681 aaaccatcag ctgtattttt gatatgtttt cgatatgtcc accatctgaa atagtaggtt
     1741 aattctatat ttttgtccgg gcaatctaaa aaaggtatat tactttctaa aaaattccac
     1801 gctgagtcgt tcggtatata ctgtttatac aattcattat ccttctcatt aaacctatca
     1861 atataacatt tatagtcagt tggttttaaa ataaagtttt gtccaaaaac aggcaatccg
     1921 atagtcaaaa caataataat caagtagatt tttattttca ttggtgttct tgtaaattta
     1981 aaattcaatc aatattcgtt ttagcagatt ccttaatata gctcccaata acagagctta
     2041 aattcatttc ttttattttt ctttcattcg ctatcaaaat gcacattcag ttagacaagc
     2101 tataagtcga tcttttttta ctatgccgca taacgagagt ctgcccaccc ccccccacac
     2161 acattcatat aattctgtac acgctgtccg gcatatagct cctgcctacg ttgcagttag
     2221 aacttgtccg tccactgacg gaaggaaagc tctactttcc atattctaat tcaatatgca
     2281 aggctggagc cttgttttta gctacgaccg agcgaagacc ctctgccgaa ctcaatgccg
     2341 acaacttgcg ctaaactagt tgaagagaag gtaactgagg ttttgtcgat acttattaac
     2401 tgctttattt agttataatt gataagctgt acagaaatct caccattatc catcaaaact
     2461 gctaacataa aataatttat cactaccttt ttgcctctca tggcaggttc ccatttcggt
     2521 aattttttta ttgtttttaa agtttgagaa tagaagattt gattgtccgg aaatgagatt
     2581 aatgcgactt tgtttggatc attagtgatt ttaagtttcc catttacatc aatagctatt
//
LOCUS       DATDNM010000154         4463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_661428, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000154 DATDNM010000000
VERSION     DATDNM010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_661428"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..561)
                     /locus_tag="VI413_02615"
     CDS             complement(<1..561)
                     /locus_tag="VI413_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008779098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEY6913543.1"
                     /translation="MSKSTKIVATISDIRCEVDFLRQLYAEGMNVVRMNSAHIQREGF
                     ERIVNNTRAVSTNLAILMDTKGPEIRTTKIEEDSIDLVTGDIIKVVGNPDVLTTKECI
                     AVNYAHFVRDLNVGDSILFDDGEIDVKVDSKTEEYLVCSVQNNGNLGSRKSVNVPGVR
                     INLPSLTEKDRTNILLAIEMNLDFIAH"
     gene            complement(631..1053)
                     /gene="aroQ"
                     /locus_tag="VI413_02620"
     CDS             complement(631..1053)
                     /gene="aroQ"
                     /locus_tag="VI413_02620"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEY6913544.1"
                     /translation="MKRIQIINGPNLNLLGKREPTVYGNQTFEAYYEELKTLFPNAQL
                     DYFQSNTEGALIDKIHEVGFSFDGIVINAGAYTHTSIAIADAIRSVTVPVIEVHISNV
                     FKREEYRHHSYLSEACKGCIVGFGMDSYRLAIDAILHF"
     gene            complement(1050..1331)
                     /locus_tag="VI413_02625"
     CDS             complement(1050..1331)
                     /locus_tag="VI413_02625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET transporter"
                     /protein_id="HEY6913545.1"
                     /translation="MAFDIVIVGYLAGFCTAVAQFPQAYKVIKTGETQSISAGMYTIM
                     TLGIFFWFAYGVLIPDLPMIIANGICLIPSIYILYITIRNTQRTKKQNL"
     gene            1555..2022
                     /locus_tag="VI413_02630"
     CDS             1555..2022
                     /locus_tag="VI413_02630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913546.1"
                     /translation="MNFRKTIELLKPGIPKRYLLFVAALMWTFAGGMLFMRGFGMLLL
                     FRRLLWLKILISIIAGLIFYFLLFSKISFKHTQRIIRMNVEKPCIFSFFNFRSYVMMV
                     LMIGMGITLRSTGIVPLEYLSVLYVTMGVPLTISAFRFYYYGFRFRLAVTLLG"
     gene            2115..>4463
                     /locus_tag="VI413_02635"
     CDS             2115..>4463
                     /locus_tag="VI413_02635"
                     /inference="COORDINATES: protein motif:HMM:NF020337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CotH kinase family protein"
                     /protein_id="HEY6913547.1"
                     /translation="MKQNLLCFFFLFFCPLSFLFSQELPHYELTISPANLDSMNAHPR
                     DEVYYPAIFKVGNLSYDVQARYKGSTTLTYPKKSWAIKFNNSTNYFGVSRINLHADYK
                     DHSAMRNFLIMKLFAFLGSPASQIKHITYRVNGQEYGVFTQVEQIDDEYLARNSRNVV
                     SLYKSNNHAALMAPTVRDDYYPIVWDIEAGGDPTYNELRVLFNKFLYWPRTDFDANVS
                     NEIEIDNFLNFFAVHFVFVDMDNFTKNIFLNKNSTSSKFELFPWDNEGSFGNSAFGVF
                     DSTFVSYNMRDSHTPEYEVAFQRLLENPTYKAIFRDKVNRILTDGYSYMDTLMDNTYL
                     KIKPSVYADTRKEATNEEFETEFTRLKWFMANRKTFLQSNDLPQRNVLTDFYCSNPLP
                     NSTNPLVTFRITSPVVQPVNMFFADSVSFDSMGKPFKFSRFELYDDGLHDDLQANDLV
                     YGNTVDATCFKSTLIPFAITGAEQNYPANGIFYIDYYRSKSYAINKGNTNQNVAANVK
                     IENVYKYNNQSVIELINTSSTESVDLSYFHLRTRNSFTDFMFREQVVLAPNETIYVAP
                     TVAIGNQFFPGKRTFISLYFNVNADDSLHLLSPVLSPVLSAYVPGNQTLAVDRAPLII
                     NEINYKSGTLKPMGDWVEIYNPGNQAVNMTGWVFKDSDNKHKFTFPNEYMLQANGYVV
                     IAEDLAAFQATCPAVANVVGSTGFGLSGSGEYVRIYDNLGMLVDSVNYSNAAPWPLNA
                     AGTGATLELKNPTFDNTDGNNWFADETKTGSPGMLNSFLMNVD"
BASE COUNT         1333 a          808 c          880 g         1442 t
ORIGIN      
        1 gtgagcaata aagtcaagat tcatttcgat agccaacagg atattggtac ggtctttttc
       61 ggtcaatgaa ggcaagttga tacgcacgcc aggaacgttc acactcttgc ggcttccaag
      121 gttaccattg ttctgtactg aacaaaccag gtattcttca gtttttgaat caactttaac
      181 gtcaatttcg ccatcgtcga ataagatgct atcgcccacg ttcaagtcgc gaacaaagtg
      241 tgcgtagttt accgcaatac attcttttgt agtaagaaca tcaggattac ctacgacttt
      301 gataatatca cctgtaacca aatcaattga atcctcttca atttttgttg tacggatttc
      361 aggacccttg gtgtccatca ggatagccag gttagtgctt actgcacggg tgttgtttac
      421 gattctttca aatccttcac gctggatatg agccgaattc atacgcacta cgttcatacc
      481 ttcagcataa agctgacgaa gaaagtctac ttcgcaacgg atatcactaa tcgttgcaac
      541 aatttttgtt gatttagaca taagaaattt tatttttata tactttaaaa actaattcga
      601 aaataattta atagcctgat aacggaatta tcagaagtgt aaaatggcat caatcgctaa
      661 gcggtatgag tccattccga atccaacgat acagcctttg caggcctcgg acaaatagga
      721 gtgatgacga tattcctcgc gtttaaaaac attggaaata tgcacttcaa tcacaggtac
      781 ggttaccgac cggatagcat cggcaatggc aatggaagta tgggtgtacg caccggcatt
      841 gataacgatg ccgtcgaacg agaaacctac ttcgtgaatt ttatcaataa gtgctccttc
      901 ggtattcgac tggaaataat ccagttgagc atttggaaaa agtgtcttta attcttcgta
      961 atacgcttca aaggtctgat taccatatac cgtcggctca cgtttaccca acaggttgag
     1021 gtttggtccg ttaataatct gaatgcgttt cataaatttt gttttttggt tcgttgcgta
     1081 ttacgaatgg tgatatagag aatatatatt gaaggaatta agcaaattcc attcgctatg
     1141 atcattggca aatcgggaat aagtacaccg taagcgaacc aaaagaaaat ccctaacgtc
     1201 attattgtat acattccagc agaaatgctt tgggtttcgc ctgtttttat cactttgtaa
     1261 gcttgaggaa actgggctac agccgtgcaa aagccggcta aataaccaac aataacgatg
     1321 tcaaatgcca tagaactaat tttgcgcaaa agtacaaaaa aaatagcaag gcacaaaatg
     1381 tgcaaaaatg tgcagtttac gaattttgat ttttggtggt ttttgtaaca aattagtatt
     1441 aaatttttcc cggttaataa taaattcaca cctttatgcc ataaatcaag tatttttata
     1501 cgcaaatgtt ctcaaaaaaa tgtgtaattt tgaagaataa atatttatca aataatgaac
     1561 ttccggaaaa caatcgaact tttaaaacca ggtattccca aacgttattt actttttgtg
     1621 gcggcactca tgtggacctt tgccggtggc atgttgttta tgcggggatt tggcatgttg
     1681 ttgcttttcc gccggttgct ctggctcaag attttgataa gtattattgc cggattaatt
     1741 ttttattttt tgctcttctc caaaatatca ttcaaacata cacaacgcat aataaggatg
     1801 aatgttgaaa agccatgtat tttttctttt ttcaatttca ggagttatgt gatgatggta
     1861 ttgatgattg gcatgggaat aacattgcgc tcaaccggaa ttgttccatt agagtattta
     1921 tcagttttat atgtaacaat gggggttcca ctcactatat cggcattccg gttttattat
     1981 tatgggtttc ggtttcgact tgctgtgaca ctattgggct gaaaattcaa aaatcataaa
     2041 tttacgcatt gttttgaaca attcacaata ttacacaatt ataaagcgta cttcgcacaa
     2101 taaagtgttc attcatgaaa caaaatttac tctgcttctt ttttctgttc ttttgtcccc
     2161 tgtctttttt gttttcacaa gaattacctc attatgaact tactatttct cctgccaacc
     2221 tggattctat gaatgctcat ccccgagatg aagtttatta tccggctatt tttaaagtgg
     2281 gtaatttaag ctatgacgtc caggcgcgtt ataaaggatc aactactttg acttatccta
     2341 aaaaaagctg ggcaataaaa ttcaataatt caacaaatta tttcggtgtc agccgtatta
     2401 atcttcatgc cgattataag gatcattcag cgatgcgtaa ttttctgatt atgaaattat
     2461 tcgcatttct gggttcgcca gcatcgcaaa tcaaacatat aacttaccgg gtgaacggac
     2521 aagaatacgg ggtttttaca caggtggagc aaattgatga tgaatatctg gcccggaata
     2581 gccgaaatgt tgtttcattg tataaatcta ataatcatgc agcgttgatg gcgccgactg
     2641 ttcgggatga ctattaccca attgtttggg atattgaagc gggcggtgac cctacataca
     2701 atgaattacg tgtactattc aacaaatttt tgtattggcc gagaacagat tttgacgcta
     2761 atgtttcgaa tgaaattgag attgataatt ttctgaattt ctttgccgta cactttgttt
     2821 ttgttgacat ggataatttt acgaaaaata tttttctgaa taagaatagt acttcttcca
     2881 aatttgaatt attcccctgg gataatgagg gatcattcgg gaattctgct ttcggggttt
     2941 tcgattccac atttgtcagc tataatatgc gcgattcgca tactccggag tacgaagttg
     3001 cttttcaacg gttgctggaa aaccctacct ataaagcaat tttcagggat aaggttaacc
     3061 ggattctgac tgatggatac agttacatgg atactttaat ggataacact tatctaaaaa
     3121 taaaaccttc agtctatgcc gacacacgta aagaggcaac aaatgaggag tttgaaactg
     3181 aattcacccg tttgaaatgg tttatggcca atagaaaaac ttttctgcaa agcaatgact
     3241 tgccgcaacg aaatgtgttg actgattttt attgctcaaa tccattgccg aacagtacaa
     3301 atccgttggt tactttccgc ataacgtctc cggttgtaca gcctgtaaat atgttttttg
     3361 cagactctgt gagttttgat tccatgggga agccattcaa attcagccgg tttgaacttt
     3421 acgatgatgg tttgcacgac gatttgcagg ctaatgacct ggtttatgga aatactgttg
     3481 atgcaacctg tttcaaaagt acacttattc catttgcaat caccggtgcc gagcaaaatt
     3541 atccggctaa cggaatattt tatattgatt attatcgttc gaaatcgtat gccataaata
     3601 aaggaaatac caatcagaat gtggctgcta atgtgaagat tgagaatgtt tataaataca
     3661 acaatcaatc agtcattgaa ttgattaata catcgtcaac cgaatcagtt gacttgtcgt
     3721 atttccatct tcggaccaga aactctttta cagattttat gtttcgcgag caggtagtat
     3781 tggctccaaa cgaaacaata tatgttgccc caacagttgc tattggtaac cagttctttc
     3841 cggggaaaag aacgtttatt agcttgtatt ttaatgtaaa tgcagatgat tcattgcatc
     3901 tgctttcacc ggtattgtca cctgtgttgt ctgcgtatgt acccggtaat caaactttgg
     3961 ctgttgacag ggcgccatta attattaatg aaataaacta taaatcaggc acgttgaaac
     4021 caatgggcga ttgggttgaa atttataatc cgggaaatca ggccgtaaat atgacaggct
     4081 gggtatttaa agacagtgat aataaacata aatttacttt tcctaatgaa tatatgttac
     4141 aggctaatgg ctatgttgtt attgctgaag atctggcagc tttccaggca acttgtccgg
     4201 ctgtagcaaa tgttgttgga agtactggtt ttggcttgtc gggttcggga gaatatgtac
     4261 ggatttatga taatttgggt atgttggttg attccgtaaa ttacagtaat gcagcaccat
     4321 ggccgctaaa tgctgcggga accggagcta ccctcgaatt gaaaaatcca acgttcgata
     4381 atacggatgg aaataactgg tttgctgatg aaaccaaaac cggttcgccg ggaatgctta
     4441 attcattctt gatgaatgtt gat
//
LOCUS       DATDNM010000155         2247 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_128118, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000155 DATDNM010000000
VERSION     DATDNM010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2247
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128118"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..811
                     /locus_tag="VI413_02640"
     CDS             <1..811
                     /locus_tag="VI413_02640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEY6913548.1"
                     /translation="FSHKGTFGHALIIAGSKGMAGASVLSAKAALRSGAGLVTVHGPE
                     CNRTIVQTSIPEAIFQSDTSNDFISEVNDIENYNSITIGPGIGTAKETAIMLENLIKQ
                     LKKPCILDADALNIIGQHNHLLQLIPHNSIFTPHPKEFERMFGSSNSSYERMLKAQKM
                     AQQLQIIIVLKGSHTLISTPDGKLYFNITGNSGMATAGSGDVLTGILAGLLAQGYSPE
                     ETAKIGVYIHGYAGDLALKSESEESLIAGDIICHLGETFQSLKADKKLPNR"
     gene            918..1541
                     /locus_tag="VI413_02645"
     CDS             918..1541
                     /locus_tag="VI413_02645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009133494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY6913549.1"
                     /translation="MDVKNEQSMEQAILEEAEKLFLEKGFALTSTTEIAKRVGCNQAL
                     VHYYFRTKDNLFNTIFEQKFRLFFQHIFELENMEELSFNDKLKHIIESHFDMIKANAK
                     LPLLIISEFSRRPEQINVLKEKLKNLPLELFNKLNADLEAEIEAGRIRPITIMDMIIT
                     VASLNVSLFLLMPIASQVASLNETQRQFIIEHRRAEHVTLILNSLRP"
     gene            1678..>2247
                     /locus_tag="VI413_02650"
     CDS             1678..>2247
                     /locus_tag="VI413_02650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007843043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY6913550.1"
                     /translation="MSLFPLFGFSQTLSIETCQEKAKANYPLVKQYGLIEQTAQYNIS
                     NANKGYLPQLSLSARATYQSQVTKLPITLPGVVIPELTKDQYQAVLEASQLIWDGGVI
                     SAQNKITNAGTEVEKKKLEVDLFSLNERVNQLYFGILLLSEQLKQNAILQNELQTNYD
                     RINAFKQNGVANQTDLDALKVEQLNADQRE"
BASE COUNT          762 a          471 c          421 g          593 t
ORIGIN      
        1 attttcccac aaaggtactt ttggtcacgc actaataatt gccggaagca aaggcatggc
       61 gggcgcttcg gtgctatcag ccaaagccgc cttacgtagc ggagccggtc tggtcacagt
      121 tcacggaccg gaatgtaacc gcacaatcgt tcagaccagt attcctgaag ccatttttca
      181 atcagacact tcgaacgact ttatttctga agtaaacgat attgaaaatt acaactcaat
      241 taccatcggc cctggtattg gaacggcaaa agaaactgca atcatgctgg aaaacctgat
      301 taaacaattg aaaaagccat gcattcttga tgccgatgcg ctgaatatta tcgggcagca
      361 caaccatttg ctgcaactca ttccccacaa cagcatcttc actcctcacc caaaagaatt
      421 tgaacggatg ttcggatctt ccaattcttc ttacgaacgc atgttgaagg cacaaaaaat
      481 ggctcaacaa ctgcaaatca tcatcgttct taagggatca catacgctca tttccacgcc
      541 cgatggcaaa ctttacttca acattaccgg caattccggc atggccacag ccggctcagg
      601 cgatgtacta accggtattc ttgccggact actggcacaa ggttattctc ctgaagaaac
      661 tgcaaaaatt ggcgtataca ttcatggata tgcaggtgat ctggcgctga aatccgaatc
      721 ggaagaatca cttattgccg gagacattat atgccatctt ggcgaaacat tccaatcttt
      781 aaaagctgac aaaaaactcc caaatcgtta attgttcgct cttttgagaa aataattaat
      841 ttgattcgat aaattatcga acaaaaagat cttactttgc atttaattaa tagagctatt
      901 aaatacataa attaaatatg gatgttaaga acgaacaatc gatggaacaa gccatcctgg
      961 aagaggctga aaaactcttt ctggaaaaag gctttgcatt gacttcgact actgaaattg
     1021 ctaaaagagt aggttgcaac caggctttgg tgcactacta tttccggaca aaagataatt
     1081 tattcaacac catttttgaa caaaaattcc gattgttttt tcaacatatt tttgagttgg
     1141 aaaacatgga agaattgtca tttaacgaca aattaaaaca tatcattgaa tctcattttg
     1201 acatgattaa agcaaatgca aaacttccac ttctcattat cagcgagttt tcaagacggc
     1261 cggaacaaat caacgtcctg aaagaaaaat tgaaaaacct tcctttggaa cttttcaata
     1321 aactaaacgc tgatttagaa gcagagattg aagccggaag aattcgccca ataacaataa
     1381 tggacatgat tatcacagtg gcatcactaa atgtttcatt gttcctgctt atgcccattg
     1441 caagtcaggt tgcttcgctt aacgaaactc aacgacaatt tattatagag cacagaagag
     1501 ctgaacatgt aacgttgatt ttgaatagtt taagaccata aagtagccct taatcagtca
     1561 gctgacggag aaaaataaat agtcatttca acaattatat gcacaaatat gaaaagtaaa
     1621 aaatcaaaaa tcaaaactaa ctctgtcctc cttcaggggt taggggtttt tcttttgatg
     1681 tcattgtttc cattatttgg tttcagccag actctaagca ttgaaacatg ccaggaaaaa
     1741 gccaaagcca attatccatt ggtaaaacaa tatggattga ttgagcaaac cgcccagtac
     1801 aacattagca atgccaacaa aggctatttg ccacaacttt cactttcggc acgcgccacc
     1861 taccagtcgc aagtaacaaa actgcccatc acattgccgg gagtggtaat tccagagctg
     1921 accaaagacc agtaccaggc tgtattggaa gcaagtcagc taatatggga tggtggagtg
     1981 atttcggcac aaaataaaat taccaacgca ggaaccgaag tagagaagaa aaagcttgaa
     2041 gtggatctgt tttcgctaaa tgagcgggtt aatcaactgt atttcggtat tttattactt
     2101 agtgagcaat taaaacaaaa tgccatttta caaaatgagc ttcagacaaa ttatgaccgc
     2161 atcaacgctt tcaagcaaaa tggagttgcg aaccaaactg atttggatgc gctaaaagtg
     2221 gaacaactaa atgccgacca acgggag
//
LOCUS       DATDNM010000156         2639 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1196047, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000156 DATDNM010000000
VERSION     DATDNM010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1196047"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..486
                     /locus_tag="VI413_02655"
     CDS             <1..486
                     /locus_tag="VI413_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEY6913551.1"
                     /translation="SNVGTRQLKDFGKGVGFNTSAEIAMDSEFSRGVIQKALNRTFAP
                     EFLNRVDDVVMFDQLSKDSIKSIIDLELKGIFGRVTALGYKLELTPETKDFIADKGYD
                     VQFGARPLKRAIQKYLEDELADVVLAGELEPGDTILMELNDETKEIKAKIVKPTIALN
                     N"
     gene            complement(553..2589)
                     /locus_tag="VI413_02660"
     CDS             complement(553..2589)
                     /locus_tag="VI413_02660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEY6913552.1"
                     /translation="MNATENKYTNHLINESSPYLLQHAHNPVDWYPWGKEALEKAQRE
                     NKNIIISIGYAACHWCHVMEHESFENKEVAEYMNKHFVCIKVDREERPDIDQIYMTAV
                     QLLTERGGWPLNCITLPDGRPIYGGTYFPKDQWLDMLSQVSGFINKYPDKAEEQAKSL
                     TQGIQNNEMIYSSAISEKQEVSIADLEDIFHYFRTNIDLKNGGFGNAPKFPMPASLQF
                     LLHFNYLTWNKDALKTVITTLNKMAAGGIYDQIGGGFSRYSTDEVWKVPHFEKMLYDN
                     AQLVSLYAAAYQQTKNPAYKTIVTETLEFISRELTSDEGGFYSSLDADSEGVEGKFYV
                     WTQSELKKILGEKANIILDYYHISEKGNWEKSQNILFKTENAGEIADKYNITEDELND
                     WILEAKKILLNERSKRIRPALDDKILTSWNALILKGYCDAYRAFDAAEYLQIAIKNAE
                     FILENLKAADNGLFRNYKNEKATIPAFMDDYAFTIRAFISLYQVTFDEKWLNESLILA
                     EYAIAHFYDSINGMFYYTSDTEPVLIARKMEISDNVIPSSNSEMAKNLFILGHYFYKD
                     EYIDMARKMQENVRHHAQNGGIYYANWDILLCWLAREPHEVTILGKKSEAKRKEFEMH
                     YLPDVFLSGGEAEGNIPALKDKLIEGETTIYVCRNNTCQRPVNDVNEALKQIYG"
BASE COUNT          771 a          516 c          466 g          886 t
ORIGIN      
        1 tccaacgttg gaacacggca attgaaagac tttggcaaag gagttgggtt taatacatct
       61 gctgaaatag ccatggattc tgaattttca cgcggagtaa ttcaaaaagc attgaatcgt
      121 acttttgctc cggagtttct gaaccgtgtt gacgatgtag taatgttcga ccaattgagc
      181 aaagattcta ttaaatctat tatcgatctg gagttgaaag gtattttcgg acgtgttact
      241 gctttgggtt ataaactgga acttacacct gaaacaaaag actttattgc cgataaaggt
      301 tacgatgttc agtttggtgc ccgtccattg aaacgtgcta ttcaaaaata cttagaagat
      361 gaattggccg atgtggtttt ggccggcgaa ctagaaccgg gagatacaat tctaatggaa
      421 ttgaatgacg aaaccaaaga aattaaagcc aaaatagtga aaccaaccat tgctttaaat
      481 aattaactat taaagcaaac agatataaaa aatcctcgcg atatttaatg tgcgaggatt
      541 ttttatatct gtctatccgt aaatttgttt taaagcttca ttcacatcat tcaccgggcg
      601 ctgacaggta ttattccgac aaacataaat agtggtttcg ccttcgatta atttatcctt
      661 gagtgcaggt atatttccct ccgcttctcc accggataaa aatacatcag gcagataatg
      721 catttcaaat tctttccgct tagcttccga tttttttccc aatatggtaa cttcatgagg
      781 ttcacgagct aaccaacaca ataaaatatc ccagttggca taataaatac ctccattctg
      841 tgcatggtgc cttacatttt cctgcatttt tcgcgccata tcaatatact catctttata
      901 gaaataatgg ccaagtataa acagattttt agccatttcc gaatttgagg atggaattac
      961 attatccgaa atttccattt ttcgtgcaat aagcaccggc tctgtatcag aagtatagta
     1021 gaacattcca ttgattgaat cataaaaatg ggcaatggca tattctgcta gtatgaggga
     1081 ttcattcaac catttttcat caaaagtaac ctgatacaga gaaatgaatg cacgaatagt
     1141 gaatgcatag tcatccataa aggccggaat tgtagctttc tcatttttat aattccgaaa
     1201 caagccatta tcggcagctt tcaggttttc aagaataaat tcagcatttt ttatggcaat
     1261 ttgtaaatat tcagcggcat cgaatgctcg gtatgcatca caataacctt tgagtattaa
     1321 cgcattccat gaggtaagga ttttatcatc aagtgccggt ctgatacgct ttgatctttc
     1381 gttcagcaat attttttttg cttccaaaat ccaatcattt aattcatctt cagtgatatt
     1441 gtatttatca gcaatttctc cagcattttc tgttttaaac aatatatttt gagatttctc
     1501 ccaatttcct ttttcagaaa tatgataata atccagtatg atatttgcct tttcgcccaa
     1561 aatctttttt agttcacttt gggtccaaac gtagaacttg ccttctacac cttcactatc
     1621 ggcatccaga gacgaataaa aaccgccttc atccgatgtc agttctctac taataaattc
     1681 aagcgtttca gttacaatgg ttttataggc cggattcttg gtctgctgat atgcagctgc
     1741 atatagactg acaagttgtg cattgtcgta aagcattttt tcgaaatgag gaactttcca
     1801 tacctcatcg gttgaatagc gtgaaaaacc acctccaatc tggtcgtaaa ttcctcctgc
     1861 agccattttg ttcaaggtgg taattactgt tttcaatgca tctttattcc acgttaaata
     1921 attaaaatgc agtaaaaatt ggaggctagc tggcattgga aatttcggag catttccaaa
     1981 tccaccattt ttcaaatcga tattcgtcct gaaataatgg aaaatatctt ccaggtcagc
     2041 tatagaaact tcctgctttt cggaaatagc agatgaataa atcatttcat tgttttggat
     2101 accttgtgtc aatgatttgg cctgctcttc ggctttgtca ggatatttgt ttataaaccc
     2161 ggaaacttgc gaaagcatat caagccattg gtctttgggg aaataggtac caccgtaaat
     2221 aggccgtcca tcgggtaatg taatacaatt tagcggccaa cctcctcttt ctgtaagcaa
     2281 ttgaactgca gtcatgtaaa tctggtcaat gtctggccgt tcttcccgat ctactttaat
     2341 acatacgaaa tgcttgttca tatattcggc cacttcttta ttttcaaaac tttcatgttc
     2401 catcacatgg caccaatgac aagctgcata accaatactg ataatgatat tcttattctc
     2461 cctctgtgcc ttttccagtg cttcttttcc ccatggatac cagtccaccg gattatgggc
     2521 gtgttgaagc aaataggggc tgctctcgtt tattaaatgg tttgtatatt tattttctgt
     2581 agcgttcatg aggtcttgtt ttatatgtca tttttttaag atgcttgctt attttagag
//
LOCUS       DATDNM010000157         3504 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1729905, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000157 DATDNM010000000
VERSION     DATDNM010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1729905"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2212
                     /locus_tag="VI413_02665"
     CDS             <1..2212
                     /locus_tag="VI413_02665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007838189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 78 protein"
                     /protein_id="HEY6913553.1"
                     /translation="AQKQIQKAITYICGLGHYEFSINGRKIGDCEFAPFWSDYDKTVY
                     YNTFDITPYLKKGENVFGVLLGNGFFNTQGGRYSKLKVSFGAPTLFFKTTIKYTDNTT
                     EEIISDNSWKYAFSPVTFNDIYGGEDYDARLEQKGWDMPGFDGKNWKPVVIQDAPNGK
                     LAPQQGYPVKIMERFGQKTVKHLSKLECDSASKKTKRIVDPSAMVFDMYQNLSGFPEI
                     TVNGKKGDKITLIVSESVTPEGAADQRQTGRPHIYNYTLKGGGDETWHPRFSYYGFHY
                     IQVEGAVLKGDKNPHKLPVLKDIKSCFVYNSATQTSTFESSNDIFNKAHVLIEKAIKS
                     NMQGIFTDCPHREKLGWIEEVHLNGPGLMYNYDLSAFMPKVMQDMADAQQTNGMVPTI
                     APMYNIFGNSKGFDEFGDSPEWGSTLNILPWMYFDFYGDSSLIVNYYQNMRRYVDYLT
                     TRADNHILSFGLGDWYDYGNFRAGYSRNTPIPLVATAYYYYDLTLLVKAAQMVGNRYD
                     ETYYQQLAEDVRAAINTKFFNAETRQYGTGSQTANSMAIYMDIVNPENRNDVLENLKK
                     DIKTHGNRLTTGDIGNRYLFQTLANNGLNDLLYTMLNHEEAPGYGFQLKFGATTLTEQ
                     WDPRMGSSWNHFMMGQIDEWFFGSLAGIQTKATAPGFQQLVIRPEVVGDLKFVKSSFE
                     TLYGKVSVDWKRVGDNFILNVLVPVNCSADVYLPGEKDPKTVKSGNYTFSKILK"
     gene            2266..>3504
                     /locus_tag="VI413_02670"
     CDS             2266..>3504
                     /locus_tag="VI413_02670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008640514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 28 protein"
                     /protein_id="HEY6913554.1"
                     /translation="MKKTLLFLLTFLQIGILSVNAELIDMRKAGANPSGTKLNTVLIN
                     KTIEKLNANGGGTLFFPAGKYLTGAIKLKSNITIELEAGATLLFSDNFDDYLPFVEMR
                     HEGIMMKSFSPLIYAVDAENITIKGEGKIDGQGKKWWDEFFRVIIDVDKNGMRDINKY
                     QPMWDRANDVKALYAETNEDYVSSMKRRFFRPPFIQPIRCKNVRIEGITIVNSPFWTV
                     NPEFCENVTVDCVTIANPLSPNTDGINPESCKYVHISNCHISVGDDCITLKSGRDLQA
                     RNLNAPNENITITNCTMLAGHGGVVIGSEMSGGVKKVVISNCVFDGTDRGIRIKSTRG
                     RGGVVEDIQINNIVMRNIQEEAIILDMLYTKMPVEPVTERTPIFRNINISNVTGSDVL
                     IPIKIRGLEESPISNITLTNI"
BASE COUNT         1083 a          747 c          773 g          901 t
ORIGIN      
        1 agctcaaaaa cagattcaga aggctatcac ttacatttgc ggactcggac attacgaatt
       61 cagtatcaat ggcaggaaaa taggcgactg cgagtttgct ccgttctgga gcgactatga
      121 taaaacggtt tattacaaca ctttcgacat tactccttac ctgaaaaaag gggaaaatgt
      181 gtttggcgta ttgctcggga atggattttt caacactcag ggcggccgat acagcaaact
      241 gaaagtatcg tttggtgcgc ctactttatt tttcaaaacc acaattaaat ataccgataa
      301 taccaccgag gaaattattt cggacaatag ctggaaatat gctttcagtc cggtaacatt
      361 caatgacatt tacggtggcg aggattacga tgcgcgcctc gaacaaaaag gctgggacat
      421 gcccggcttt gatggtaaaa actggaagcc ggtagttata caggatgctc caaatggcaa
      481 actggctccg caacaaggct atccggtgaa aataatggaa cgcttcggcc agaaaacggt
      541 aaaacatttg tcgaaactgg aatgtgacag tgcttcgaaa aagacaaaac gcatagtaga
      601 cccttcggca atggttttcg atatgtatca gaacctgtcc ggcttccctg aaattacagt
      661 gaatggcaaa aaaggcgata aaataacgct cattgtttct gaatctgtaa cgcccgaagg
      721 cgcggcagac caacgtcaaa cggggcgccc gcacatttac aactacacgc ttaaaggcgg
      781 tggcgacgaa acctggcacc cgcgcttttc ctactacggt tttcattaca tccaggtgga
      841 aggtgccgtg ctgaaaggag ataaaaaccc tcacaaattg cccgtattga aagatataaa
      901 atcctgtttt gtatataatt ccgccacgca aacatctact ttcgaaagct ctaacgacat
      961 tttcaacaaa gcgcatgtgc tgattgaaaa agcgataaaa agtaatatgc agggcatttt
     1021 caccgactgt ccgcatcgcg aaaaactggg ttggattgaa gaagttcacc tcaatggacc
     1081 tggattgatg tataattacg atctatctgc ttttatgccg aaagtgatgc aggacatggc
     1141 cgatgcgcag caaaccaacg gcatggttcc gaccattgcg ccaatgtata atattttcgg
     1201 taacagcaaa ggtttcgatg agtttggcga ttcgccggaa tggggaagca ctttgaatat
     1261 tttgccctgg atgtattttg atttctacgg cgactcgtca ttgattgtca attactacca
     1321 aaacatgcgc agatacgttg attacctgac tacccgcgct gataaccaca tcctttcatt
     1381 cggacttggc gactggtacg attacggaaa tttccgcgca ggttattcgc gaaacacacc
     1441 gattccactg gtggcaacag cttattatta ctacgatttg accttactgg tgaaagccgc
     1501 ccaaatggtt ggcaacagat acgatgaaac ctattaccag caattggcag aagatgttcg
     1561 agcagcaatc aataccaaat tcttcaacgc agaaaccagg caatacggaa caggcagcca
     1621 aactgctaac tcaatggcca tttatatgga tattgtcaat cccgaaaatc gaaatgacgt
     1681 gcttgagaat ttaaaaaaag atatcaaaac acatggcaac cgacttacca ccggcgacat
     1741 tggcaaccgt tatttgttcc agacattggc caataacgga ttgaacgatt tgctttacac
     1801 catgctcaat cacgaagaag ctccgggtta cggttttcag ctgaaatttg gcgccaccac
     1861 actcaccgag caatgggatc cacgcatggg ttcgtcgtgg aaccacttta tgatggggca
     1921 aatagacgaa tggttctttg gttcattggc aggaattcag accaaagcca cagcaccggg
     1981 atttcagcag ttggtaattc gtcctgaagt ggttggcgat ttgaaattcg taaaatcgtc
     2041 gttcgaaacg ctttacggaa aagtttcggt agactggaag cgggttggag acaatttcat
     2101 actgaatgtt ttagttccgg taaactgttc ggccgatgtt tatcttccgg gcgaaaaaga
     2161 cccaaaaaca gtaaaaagcg gaaattacac attttctaaa atattaaaat agatctatag
     2221 cttttccaac gtttaaaact ttagaaaagc tgaatgcaaa aaaatatgaa aaagacttta
     2281 ttattcttac tcacattttt acaaatcggt attttatctg tcaatgcaga acttattgac
     2341 atgcgcaaag ccggagcaaa tccgtcgggc acaaagttga ataccgtttt aataaataaa
     2401 actatcgaaa agctgaatgc taacgggggt ggaacgttat ttttcccagc cggtaaatac
     2461 ctgaccggag ccattaaact gaaaagcaat atcaccattg aactcgaagc cggagcaacg
     2521 cttttgtttt cggataattt cgacgattat ctgccttttg tggaaatgcg ccacgaagga
     2581 attatgatga aaagtttctc cccattaatt tacgctgtag atgcggaaaa tattaccatc
     2641 aaaggcgaag gaaaaattga tggccagggc aaaaaatggt gggacgaatt tttccgtgtt
     2701 attattgacg tggataaaaa cgggatgcgt gatatcaata aataccaacc catgtgggac
     2761 agggcaaacg acgtgaaagc actttatgca gaaacaaacg aagattatgt ttcttccatg
     2821 aaacgtcgtt tttttcgtcc gccgtttatt caacccatac gctgtaaaaa tgtccggatt
     2881 gaaggaatca ccattgtcaa ctcacccttc tggacggtga atcctgagtt ttgtgaaaac
     2941 gtaactgtag attgtgttac gattgccaat cctctttcac ccaacaccga cggtattaat
     3001 cccgaatcgt gtaaatatgt acacatttcc aattgccata tttccgttgg cgacgactgt
     3061 atcacgctaa aaagcggtcg tgacctgcaa gcccggaact taaacgctcc gaatgaaaat
     3121 atcaccatca ccaattgtac catgctggcc ggtcatggcg gtgtggttat tggcagcgaa
     3181 atgagcggtg gcgtgaaaaa agtggttatc agcaactgtg ttttcgatgg aactgaccgt
     3241 ggtatccgca tcaaatcgac ccgtggacga ggtggcgtgg tggaagatat ccagataaat
     3301 aacatcgtga tgaggaatat tcaggaagaa gccattattt tggatatgct ttataccaaa
     3361 atgcccgttg aaccggtcac agaacggact ccgattttcc gcaacatcaa tatcagtaat
     3421 gttaccggtt cggacgtatt gattccgata aaaatcagag ggttggaaga atcgcccatt
     3481 tcaaacatca cgcttacaaa catc
//
LOCUS       DATDNM010000158         2397 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_982556, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000158 DATDNM010000000
VERSION     DATDNM010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2397
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_982556"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VI413_02675"
     CDS             <1..233
                     /locus_tag="VI413_02675"
                     /inference="COORDINATES: protein motif:HMM:NF044575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913555.1"
                     /translation="NAAFASHSAAREAIDDVVRMVARASGHAAATAHVANHALHASTY
                     AIKAIVLSGGDSMTELNWQIECLKKMIESNNR"
     gene            248..799
                     /locus_tag="VI413_02680"
     CDS             248..799
                     /locus_tag="VI413_02680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913556.1"
                     /translation="MKTNIPEEIRQRVEKLYTSCRGKTVGMLPVTILHIHADFTLIAS
                     GQEATPENMWLLEIGSEKTSQEFFRHNPPTPGEVEEAIQTVEDEVMMLSKLLPADSAL
                     YTTDTAIRHIALQKDNAENTPEIVLSRPDMEQIFGRLAAIISGRPSSSDYQPTDNAFA
                     TTLLILREVMFHLKFAEIRIVQK"
     gene            819..1388
                     /locus_tag="VI413_02685"
     CDS             819..1388
                     /locus_tag="VI413_02685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEY6913557.1"
                     /translation="MKTKNVVFKSLFGVISLFTINSCIGIPKGATAATPFDKEKYLGT
                     WYEIARFDFRFERDLNNTTANYSLNTDGSIKVVNRGYNYKTREWKQATGKAKFAGNSN
                     VARLKVSFFGPFYAGYNVIALDKEYKYALVAGNNLKYLWILSREQTIPENVKQNYLKI
                     AEGLGYKTSSLIWVEHDKKQEEFIGSAND"
     gene            1532..>2397
                     /gene="pepT"
                     /locus_tag="VI413_02690"
     CDS             1532..>2397
                     /gene="pepT"
                     /locus_tag="VI413_02690"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009291818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045148 - tripeptide aminopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HEY6913558.1"
                     /translation="MNITDRFLKYVSFTTTSDENTNMTPSTPGQMIFAKYLVEELTSM
                     GMQEVDLDSNGYIMATLPANTDKQIPTIGFISHMDTSPDMSAKHVKARVVQNYDGKDI
                     LLNEEKSIVFETEKYPEILQYKGQDIVVTDGTTLLGADDKAGLAEIVSAMEYLIAHPE
                     IKHGKIRIGFTPDEEIGQGADHFDVKKFNADWAYTMDGGEIGELEYENFNAAGAKVHF
                     NGTNVHPGYAYHKMINSMRIAQQFVGMLPRSETPEHTVGYEGFYHLTNMEGTVEKSTL
                     SYIIRDHDRDRF"
BASE COUNT          778 a          502 c          497 g          620 t
ORIGIN      
        1 gcaatgcggc attcgcatca cattctgctg cacgtgaagc tattgatgat gtagttcgta
       61 tggtggccag agcttcaggt cacgctgctg caactgccca tgttgccaat cacgctctgc
      121 acgcttcaac ttatgcaatc aaggcaattg ttttatcagg aggtgattca atgactgaac
      181 tgaactggca aatagaatgt ttaaaaaaga tgattgaaag taataacaga tagaaataaa
      241 gcaatccatg aagacaaata tccccgaaga aatcagacaa cgtgtcgaaa aactttatac
      301 ttcctgccgg ggaaaaactg taggaatgct cccagtgaca attcttcata tacatgctga
      361 ttttacatta attgcgtccg gacaggaagc cacccctgaa aatatgtggt tactcgaaat
      421 tggatcagag aaaacttcgc aggagttctt caggcataac cctccaactc ccggcgaagt
      481 ggaagaagcc attcaaacgg tggaagatga agttatgatg ctgagcaaac ttttaccagc
      541 cgattcggca ctctatacca ccgatacagc tatccggcac attgcgttac aaaaagacaa
      601 cgccgaaaat acaccggaaa tagtcctttc gcgcccggac atggagcaga tcttcggacg
      661 gttggcggct attatttcgg gccggccatc cagtagtgat taccagccaa ccgacaatgc
      721 atttgcaacc acgcttttaa tcttacgcga agtaatgttt catttgaaat ttgctgaaat
      781 aagaattgtt cagaaataat actttaaaac caattgccat gaaaaccaaa aatgtagttt
      841 ttaaatcttt gtttggagta atcagtcttt ttaccattaa ttcctgcata ggtattccca
      901 aaggagccac tgctgcaacg cctttcgata aagaaaaata cctgggtacg tggtacgaaa
      961 ttgctcgctt tgacttccgt ttcgagcggg atttgaacaa cacaacagct aattactctc
     1021 tcaatacgga tggcagcata aaagttgtaa accgcggcta caactataaa accagggaat
     1081 ggaaacaggc aaccggcaaa gctaaatttg caggcaactc caatgttgcc cggcttaaag
     1141 tatcgttttt cggacctttt tacgcaggct ataatgttat tgcgttagat aaagaataca
     1201 aatatgcttt ggtagcggga aataacctga agtatctgtg gatattgagc cgggagcaaa
     1261 caatacccga aaatgtaaaa caaaactacc ttaaaatagc tgagggtctg ggttataaaa
     1321 catcttcgct catttgggta gaacatgata aaaaacagga agaatttatc ggatcggcaa
     1381 atgattagaa gtttcccttt acacttcagc cagaatcttc gcaacagagt tgtttttcat
     1441 cttacttttc gagaataaaa acgattaaaa aatgaatttg tatacttttt tttatataat
     1501 tttgcagctt aatttttaaa tccccatcat tatgaacatc accgaccgtt ttctgaaata
     1561 tgtgagcttt accaccactt ccgacgaaaa caccaatatg actcccagca ctccgggtca
     1621 aatgattttt gcaaaatacc ttgtcgaaga attgacttca atgggtatgc aggaagtaga
     1681 tttagacagt aacggttata tcatggcaac actgcccgcc aatacggaca agcaaattcc
     1741 cacgatcggt tttatttcgc acatggatac cagcccggat atgtcggcaa aacatgtaaa
     1801 agcacgtgtt gttcagaatt acgatggaaa ggatatcttg ctgaatgaag aaaaatcaat
     1861 tgtttttgaa acagagaaat accctgaaat tctgcaatat aaaggccagg atatagtggt
     1921 aactgatgga accaccctgt tgggcgctga cgataaagcc ggccttgccg aaattgtatc
     1981 ggccatggaa tacctgattg cacatcccga aataaaacat ggtaaaatcc gcataggttt
     2041 tacacccgac gaagaaatcg gacagggtgc agatcatttt gatgtaaaga aattcaatgc
     2101 cgactgggca tataccatgg atggtggcga aataggcgaa ctggagtatg aaaatttcaa
     2161 tgcagccggt gccaaagtgc atttcaacgg aacaaatgta catccgggat atgcctacca
     2221 caaaatgatt aactccatgc gtattgcgca gcaattcgta ggaatgctgc cacgctcaga
     2281 aacacctgaa catactgtag gttacgaagg tttttaccac ctcaccaata tggaaggaac
     2341 agttgagaaa tcgacgttga gctatataat ccgcgaccac gaccgtgacc gttttga
//
LOCUS       DATDNM010000159         4808 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2050766, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000159 DATDNM010000000
VERSION     DATDNM010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4808
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2050766"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..487
                     /locus_tag="VI413_02695"
     CDS             <1..487
                     /locus_tag="VI413_02695"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6913559.1"
                     /translation="SDWEKQLQMINLNITALTYLTRLFLPDMVANKSGRILIVASTAA
                     FQPGPTMSMYFASKGFVLSFSEAIANELSGTGVTVTALCPGATETGFKQAASLDSSNL
                     FKGNGIATSLEVAKFGYKSMKAGKTVAVHGFVNSLMAQSVRFAPRKIVTAIARQKLKT
                     S"
     gene            636..827
                     /locus_tag="VI413_02700"
     CDS             636..827
                     /locus_tag="VI413_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004570569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HEY6913560.1"
                     /translation="MSKGTVKFFNESKGFGFISEDGSKKEHFVHISGLIDQIREGDTV
                     EFDLQEGKKGLNAVNVKVI"
     gene            1214..3763
                     /locus_tag="VI413_02705"
     CDS             1214..3763
                     /locus_tag="VI413_02705"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEY6913561.1"
                     /translation="MAARFSKQWSMAQQEKVYLQTDKPYYSAGENIWFKGYVVNAVTH
                     LPKSLSQFLYVELIDKSNAVITRVKIKKDSLGFAGYIKLKPELHTGNYALRAYTFWMQ
                     NTPIDFFFKKNIYIGNPIDDYVLSNITYGTNANGKVAATISFTDAYKNPISGKNVDIF
                     QNWNNPQNKKNTMVTTADGKINLQLAIDTTFHSTRIVDVSMNEPGNRYSNRFFLPEFS
                     YDYDVQFFPESGNLLTNELQVVAFKAIGTDGLSVDIAGKIFTDKNEEIVEFSSFNKGM
                     GKFSLQVDSGVSYYAVVKSAKGIEKRFALPKTQNQGVAMHMVYNRGKLFYEVINKTST
                     ANDAFYLLVHSRGRLLAALPLNELTGQISESLLPPGIISLSVADTLGNTYCERLCFVR
                     NSTPPTINMVSNKPVYGKREPVDLIFNLQSAAGKPCVGNFSMSVTDSRIVKLDSLSDN
                     IMTYLLLGSDIKGYIEDPGNYFTDSLALNRERLDNLMLTQGWKRFNTTEVVSGKFYEP
                     TYYIEAGQALSGKVLNILNKPSKKCGIIMISPYKRLIKLAETDSVGRYLIDGIEFPDS
                     TTFILKAKKEKAFGDVEVIPDMDEFPKSNVFIPLRLAENLAVPNDYFLQSKEKYFTDG
                     GMRVVNLDGVTVKAAKIEKKKETHYYSGMEDTKITSEKLEEFPGMGVLEILSMMPGVQ
                     VNGDQVSIRGSNGNPLFMIDEIESMSMDDITYLNSTDIEEILVFKGANAAIFGSKGGN
                     GVVAISLKKGVVRKAETPISLVTVTPLGYEKRAEFYVPKYDVDSVRLNRKSDLRSTIY
                     WNPELVSDSTGTVHVKFFTADKANDYSVVLEGISNKGEICRYVGYLRRKGE"
     gene            complement(3845..>4808)
                     /locus_tag="VI413_02710"
     CDS             complement(3845..>4808)
                     /locus_tag="VI413_02710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005855553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY6913562.1"
                     /translation="ENKLGIKGSPTCELVFNNTPAKLVGTRRMGLIKYVMSLMNGARL
                     GIGAQSVGLSAAAYNEALAYARDRRQFGKAIIEFPAVFEMVSIIKAKLDASRALLYET
                     TRFVDIYKAYEAIESERKLDADEKADYKEYLKLADALTPMLKMFSSEYANQNAYDSIQ
                     VHGGSGFMKDYACERLFRDARIMTIYEGTSQLQVVAAIRHVTTGNYLKMIRDYDNQPI
                     NPEFTSLRKRLQIMTNLYENAVNRVNETKNQEYLDFQARRLVEMAGHIIMTYLLLIDA
                     TRDTEDQFRKSAEIYLNFGEVEVRRHAAFIKKFEVEDVDIYKVQ"
BASE COUNT         1475 a          790 c         1022 g         1521 t
ORIGIN      
        1 gtccgattgg gaaaagcaat tgcaaatgat aaatttgaat ataactgctt tgacatattt
       61 gacgcgatta tttttgcccg acatggttgc taataaatcc gggcggattc tgattgttgc
      121 ttctacggct gcttttcaac ccggcccgac catgtcaatg tattttgcct caaaggggtt
      181 cgtattaagc ttttcggagg ccatcgcaaa cgagttgagt ggaactggcg ttactgttac
      241 tgcattatgt ccgggtgcta ctgaaaccgg tttcaagcag gcagcgtcac ttgatagtag
      301 taacctgttt aaaggtaatg gaattgccac gtcgctggaa gtagcaaagt ttggttataa
      361 atccatgaaa gccgggaaaa cggttgctgt tcatggattt gtgaattcgc ttatggctca
      421 atcggttcgg tttgcaccac gaaaaattgt gactgcaatt gctcgccaaa aattgaaaac
      481 aagttgattt tatctgcgat atttatcctt attttaatct aatttggact aaagttgaaa
      541 attatttaca agtttgtgat atatttttca aaaaacagtg atttataata atataacatt
      601 atctttgtcg gacattaaaa taataaatat caacaatgag taaaggaaca gttaaattct
      661 tcaatgaatc taaaggattt ggatttatca gcgaagatgg ttcaaaaaaa gaacattttg
      721 tacacatttc tggtttaatc gatcaaattc gcgaaggcga cacagttgaa ttcgatttgc
      781 aagaaggcaa aaaaggattg aacgcagtaa atgtaaaagt aatctagtat atactatttg
      841 acttttgtca cgatttaaaa aagcctgtcg atttatttcg acaggctttt tttgtaataa
      901 tgtgtgagcc attaaacgat ttgtaggaat aatagtccaa taaagcatta atggctgata
      961 attttgaatt atacttaaaa taaatcaatt tgaagatttt ttcataatca gacgttattt
     1021 tggttaaaat gtatatcttt gtgaattaat tgaaaaatca atagtttttg ttagcgagtg
     1081 atttaaattc gggtctaatt attttaatgt atttatgaaa aacaccatca aacatttttt
     1141 ttgtctatta tttctcgccc tctctatttt ttctcaatct tatgccaatc cctcacccgt
     1201 ttttctgaaa aaaatggctg cccgtttttc caagcaatgg agcatggcgc agcaggaaaa
     1261 agtctattta caaacagata agccctacta ttctgctggt gaaaatatat ggtttaaggg
     1321 gtatgtagta aacgctgtca cgcacttgcc taaatctttg agccagtttt tgtatgttga
     1381 gctgattgac aaatcgaatg cagtaattac ccgtgtgaaa atcaagaaag attcactcgg
     1441 ctttgctgga tatattaaac taaaaccaga gctacataca ggaaattatg cccttcgagc
     1501 ttatacgttt tggatgcaga atactccaat tgatttcttt ttcaaaaaaa atatttatat
     1561 cggaaatccg atagatgatt atgtgttgag taatattact tatggaacca atgccaacgg
     1621 taaagttgct gctacaatca gttttaccga cgcatataaa aatccgattt caggaaaaaa
     1681 tgttgatatt tttcaaaact ggaataatcc tcaaaataag aagaatacca tggtgacgac
     1741 tgctgatggg aaaatcaatc ttcaattggc gattgataca acttttcatt ctaccagaat
     1801 tgtagatgta tcaatgaatg aacctggcaa cagatacagc aaccggttct ttttgccaga
     1861 attcagttac gattatgatg tccaattttt tcctgaaagt ggaaacttgt tgacaaatga
     1921 attgcaggtt gtagcattta aggcaattgg aacggatgga ttatctgttg atattgcagg
     1981 aaaaattttc acggataaaa atgaggaaat tgttgaattt tcatctttta ataaaggtat
     2041 gggtaagttc tcacttcagg tggattctgg cgtgagctat tatgcagtgg taaaatctgc
     2101 aaagggaatt gaaaagcggt ttgcactgcc aaagacacag aatcagggtg tcgccatgca
     2161 tatggtttat aatcgtggaa agttgtttta tgaggtgata aataaaactt ctacagccaa
     2221 tgatgctttt tatttactgg tgcattctcg tgggcgttta ttggcagctt tgccgttaaa
     2281 tgagcttacc ggacaaatat cagaatcgtt gcttccacct ggaattatat ctctttctgt
     2341 tgccgataca ttgggtaata catactgcga aagactttgt tttgtcagga attctactcc
     2401 gccaacaata aatatggtga gtaataagcc ggtttatgga aagcgagagc ctgtagatct
     2461 tatctttaat ctgcaatctg cagcaggaaa accatgtgtg ggaaatttct ctatgagtgt
     2521 tactgatagc cggattgtga agctggatag tttgagtgat aatataatga cctatttatt
     2581 gttgggttct gacataaaag gttatattga agacccgggc aattatttta ccgatagttt
     2641 ggctctgaat cgggaaagat tggataattt aatgttgaca cagggttgga agcgttttaa
     2701 tacgacggaa gtggtaagtg gaaaatttta tgaacctacc tattacatcg aagctggtca
     2761 ggctttgtcg ggcaaggtgt tgaacatcct gaataaacca tcaaagaaat gtggtataat
     2821 aatgatttcg ccttacaaaa ggctcataaa actagccgaa actgatagcg ttggtcggta
     2881 cttgattgat ggaattgaat ttcctgacag cacgactttt attcttaaag cgaaaaaaga
     2941 aaaggcattc ggcgatgtgg aggtgatacc ggatatggat gaattcccca aatcaaatgt
     3001 ttttatacca ttgcgtcttg ctgaaaattt agcagtgccg aatgattatt tcttgcagag
     3061 caaggaaaag tattttaccg acggtggaat gcgggttgtg aatttggacg gcgtgactgt
     3121 gaaagcggct aaaatagaaa agaagaagga aactcattat tattcgggga tggaagatac
     3181 aaagattact tctgaaaagt tggaagaatt tccaggaatg ggagttttgg aaattctatc
     3241 catgatgcct ggcgtacagg ttaatggtga tcaggtttcg atacggggca gtaatggaaa
     3301 tccgttgttt atgattgatg agattgaatc aatgagtatg gatgatatta cgtatttaaa
     3361 ctctacggat attgaagaga ttttggtttt taaaggggca aatgctgcaa tttttggttc
     3421 aaaaggcggt aatggcgttg ttgctatttc acttaagaaa ggggttgtac gcaaagcgga
     3481 aacacctata agcctggtga cagttacacc gcttggttat gaaaagcgag cagagtttta
     3541 tgtgccaaaa tatgacgtgg atagtgtccg tttaaataga aaatcagatt tacgttccac
     3601 aatttactgg aatcctgaac ttgttagcga cagtaccggg acggttcatg tcaagttctt
     3661 tacagccgat aaagctaacg attattcagt tgtgctcgaa ggaatttcga acaaaggtga
     3721 gatttgtcgt tacgtcggct atttgagacg gaaaggggaa taggaagttg aagttcaaac
     3781 aaaaatgctc ccggaaattt gatttccggg agcattttat tttataacgt tattgataaa
     3841 agtcttattg tactttgtaa atatcaacgt cttctacttc aaacttcttg ataaatgcag
     3901 catgacgacg aacttccact tctccgaaat tcaaatagat ttcagctgat ttgcggaatt
     3961 gatcttcagt gtcgcgtgtg gcatcaataa gcaacaagta agtcatgata atatgaccag
     4021 ccatttctac caggcgacga gcctggaaat ccagatattc ctgatttttg gtttcgttta
     4081 cacgatttac tgcattttca tacaaattag tcataatttg taagcgtttg cgtaacgatg
     4141 taaattcagg attgataggt tgattgtcgt aatcgcgaat cattttcagg taattgccgg
     4201 tggttacgtg gcgtatagcc gcaacaacct gtaattgtga agtgccttcg tagatagtca
     4261 taatacgagc gtcacggaaa agacgttcac acgcataatc tttcataaat cctgaaccac
     4321 cgtgtacctg aatagaatcg tacgcgtttt ggttggcata ttcgctcgag aacattttaa
     4381 gcattggagt caatgcgtct gccagcttta gatattcttt atagtcagct ttttcatctg
     4441 cgtccagttt gcgttcactt tcaatagctt cataagcttt gtaaatatcc acaaagcggg
     4501 ttgtttcata aagcaaggcg cgtgaagcat ccaatttggc tttgatgatt gataccattt
     4561 caaatacagc agggaattca ataatggctt ttccaaactg gcgacgatcg cgggcataag
     4621 ccaaagcttc gttatatgca gcagccgaaa gacctactga ttgtgctcca atacctaatc
     4681 gggctccgtt catcaacgac attacgtatt tgatcaaacc catgcggcgg gttccaacca
     4741 gtttcgctgg tgtgttgttg aaaaccaatt cacacgttgg tgaacctttg atacctaatt
     4801 tattttcg
//
LOCUS       DATDNM010000160         4773 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1944018, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000160 DATDNM010000000
VERSION     DATDNM010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4773
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1944018"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..359)
                     /locus_tag="VI413_02715"
     CDS             complement(<1..359)
                     /locus_tag="VI413_02715"
                     /inference="COORDINATES: protein motif:HMM:NF044977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase"
                     /protein_id="HEY6913563.1"
                     /translation="MMKSIYKSLPILLFMAIYTICNCQNIPTYDRASWLQKAENAKPT
                     LTETVIRPAGIVNMVADEASFQGWKAETVSAPGELYKSSFKKMKQVTLDFGNHYTGYF
                     TFKLGVLSGTPDGPVRL"
     gene            complement(617..2236)
                     /locus_tag="VI413_02720"
     CDS             complement(617..2236)
                     /locus_tag="VI413_02720"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY6913564.1"
                     /translation="MKLLKLLIFLLIGVNSGLSAQNVADRPRIIRSVPAFGDCNVDPN
                     LKEIELEFDQDMKEGYSVMDGAYKFKITSKPIWKTNRILLLPVTLEPNTFYLNYLNNN
                     NFSNFRNKAGLPLNATYLTFRTRATTAQVPTDTLRNKILYEKFSDYFLKHYANKNLHG
                     VNWKKLLDSIEPAIVKSDSENEFGLRLLQILKKADDPLMLVYFNKIYFNCTDFRITPF
                     SHNYVALFDELTNLQSSQKQAVYSGKIGDAAYVLIKSFNSYFTDDINFAIEKIKEMRD
                     MPYLILDLRMNADGDDKPARKLISSLLTNPITYQKIKTFNESTSLFDKSETCTLNPDM
                     LGNGYKGKIIVLTGESVMRSAESALLMIKQMPNVQIIGSKTYGSCSYPTDFEFSKTFF
                     VAIPSLQVFDMNDQLIQGNGIKPDVEIAFTEEQVWNSDPVFEYAKKLINYSEVKTGSA
                     NDSLGFQIWPENVKDVTTLSWKTQFNTTTKVELLDRNGKTVMTQSPAEKPEGINQLQL
                     NLSDYRLKPGKYLAKLTCNNISSVQQLIYLP"
     gene            complement(2303..3919)
                     /locus_tag="VI413_02725"
     CDS             complement(2303..3919)
                     /locus_tag="VI413_02725"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY6913565.1"
                     /translation="MKLFYLLAFFVVLTYSSLLAQTTINPPRIIRSVPEFGDCNVDPG
                     LTAIEIEFDQDMQTGYSFIDDPDMVTTTSKPVWKTKRILTLPITLGPNKFYRVPMNNN
                     TYNNFRNEAGTPMDATYLAFRTKTTIHPTLVDTILNRTNYEKFCAHFLTNYSYKDMHG
                     INWKKLLDSIKPTIIKSEFENEFAVRLLQVLKKANDPHLSISINGKYFTCADIRITPL
                     VYNYDAIFNELTDVQGSSSYAVLSGKVGEAGYMLIQTLNSQYKDDINYGVGVLREMKD
                     LPYLILDLRLNTGGDETLAKTFVSSLISNSVTYEKVMTINSTTGVCDMETLKTLNPSS
                     TSIRYKGKIFVLTSNRVVSSAESMVLMLKQMPNVEIVGTKTYGSSGNPVTFKATNAVS
                     VNIPSWMAYTTNGQLIEGNGIEPDVKLEFPEEKFIAEDPIFEYVKNRMLTGIESPYAS
                     SDVDFTIFPNPVKETAHLRVSNTGNKKAAVQVLDMNGKTLIAQPAVSWSTVDNSLEIN
                     LKPWQLKPGIYFIKLTAEGKTNIQKMVYQP"
     gene            4375..>4773
                     /locus_tag="VI413_02730"
     CDS             4375..>4773
                     /locus_tag="VI413_02730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913566.1"
                     /translation="MDPVFFPSTAEFRKWLEGNHQSAAEILVGYYKVNTGKPSMNWSD
                     SVDEALCYGWIDGVRRSVDAQSYCIRFTPRRTKSNWSRVNIEKVEKLIREERMQPAGL
                     AAYNNRAEARSEIYSYENQPDKLSEDLELIF"
BASE COUNT         1369 a          905 c          935 g         1564 t
ORIGIN      
        1 tttaacctta caggcccgtc gggcgttccg cttaaaaccc ccagtttgaa ggtgaaatat
       61 ccggtataat gattaccaaa atccagggtc acctgcttca tttttttgaa tgagctcttg
      121 taaagctctc cgggggcaga aactgtttct gctttccagc cctggaatga ggcttcgtca
      181 gccaccatgt taacaatgcc ggctggccga atgactgttt ctgtaagtgt tggtttggca
      241 ttttcagcct tttgcagcca actggccctg tcataagttg gaatgttctg gcaattgcaa
      301 atggtgtaaa tagccataaa gagcaaaata ggcaggcttt tataaatgct tttcatcata
      361 ggtggattat taagtggtta ggttcgcttt catttaccgg ctactaaaat aaattatttt
      421 accataaaac catgcggcaa ataagctatt ccggtctttg gacaaatgta ggatgacact
      481 ttactacagt caatgcacaa aatgcacttt cttatacata aaatgccttc tttgccggaa
      541 ataaacaaag aaagcatttt agaaatatgt gtcttgaata tctcttagag aaatacttaa
      601 agcttaaatt tagtttttaa ggcagatata tcagctgctg aacgcttgat atattgttac
      661 atgttaattt tgcaaggtac ttccctggtt ttaaccgata gtctgaaaga tttagttgca
      721 gctggttaat cccttctggt ttttctgcag gggactgggt catcactgtt ttaccgtttc
      781 tgtccaacag ttctacttta gtggttgtat taaattgagt tttccaactt aaggttgtaa
      841 catctttaac attttctggc catatctgga acccaagact atcgtttgcg ctgcccgttt
      901 tcacttctga atagtttata agctttttgg catattcaaa gaccggatca ctgttccaca
      961 cctgttcttc tgtaaatgca atttcaacat caggcttgat gccatttccc tgaatcaatt
     1021 gatcattcat gtcaaaaacc tgtaatgaag ggatcgctac aaagaatgtt tttgaaaact
     1081 caaagtctgt cggatagcta caactgccat atgttttgct gccaatgatc tgaacattgg
     1141 gcatttgttt aatcattagc aaagccgatt cagcacttct catcaccgat tcaccggtaa
     1201 gtacaattat tttcccctta tagccattac ccaacatgtc aggattcaat gtacaggttt
     1261 cacttttatc aaataagctt gttgattcat tgaatgtttt tatcttttgg taagtgattg
     1321 gattggttag taaggacgaa atcaactttc tggcaggttt atcatctccg tccgcattca
     1381 tccgaaggtc aagaatcagg tagggcatat ccctcatttc ttttatcttt tcaatggcaa
     1441 aattgatatc gtcagtgaaa taagaattaa aggatttaat aagtacgtat gctgcatcac
     1501 cgattttacc tgaatataca gcctgttttt gacttgactg aagattggtc aattcatcaa
     1561 acagggcaac atagttatgt gaaaatgggg taatgcgaaa gtcagtacag ttgaagtaga
     1621 ttttattaaa gtaaacaagc atcaaaggat catctgcttt tttaagaatc tgtaaaagtc
     1681 ttaagccaaa ttcattttct gaatcagatt ttacaatagc tggttcaatt gaatccagta
     1741 gctttttcca attcaccccg tgaagatttt tgttggcata atgctttaaa aaatagtcac
     1801 tgaatttttc gtaaaggatt ttatttcgca aagtatccgt tggaacctgt gccgtcgttg
     1861 ctcttgtacg aaatgtcagg tacgtagcat taaggggaag ccccgcttta tttctgaaat
     1921 tactgaagtt gttgttgttc aggtaattca aataaaatgt attgggctca agggttactg
     1981 gtaacaagag aatgcgattg gttttccata ttggttttga agtgatttta aacttgtatg
     2041 caccatccat gacagaatat ccctccttca tatcctggtc aaactccagt tcaatttctt
     2101 ttagattagg atcgacattg caatcaccaa atgccggaac agagcggata atacgaggcc
     2161 tgtcagccac attttgcgct gacaggcctg aatttacacc tattaacaga aagataagaa
     2221 gcttcaaaag tttcatttta tgatcgtctt attttggcta atataggaaa tttatatgtt
     2281 gcatgttttt gaatatagca tcttatggct gatataccat tttttgaatg tttgttttgc
     2341 cctcagcggt cagtttgatg aaatagatac ccggtttcaa ttgccagggc ttaagattta
     2401 tttccaaact gttgtcaact gtggaccacg aaacggcagg ctgggcaatc agcgttttgc
     2461 cattcatgtc aagcacctgg acggctgcct ttttatttcc tgtatttgat actctaagat
     2521 gtgctgtctc ttttaccggg ttagggaaga tggtaaagtc aacatcagag gatgcgtaag
     2581 gcgattctat gcctgtgagc attcgatttt taacatactc aaaaatgggg tcttcagcga
     2641 taaacttttc ttccggaaat tctaatttta catccggttc aatgccattg ccttcaatca
     2701 actggccatt tgtagtatat gccatccacg aggggatgtt tacactaacg gcatttgtag
     2761 ccttaaaggt gaccggatta ccgctgcttc cataggtttt agttccaacg atttccacgt
     2821 ttggcatctg tttcagcatc aacaccatgg attctgcact gctgacaaca cggttactgg
     2881 taaggacaaa tatttttccc ttgtaacgga tactggtact gcttggatta agtgttttta
     2941 atgtttccat atcacacacc ccggttgtgg aattgatggt cattaccttt tcgtaggtca
     3001 ccgaatttga tataagggat gaaacaaatg tttttgccag ggtttcatcg cctcccgtat
     3061 tcaacctcaa atccagaata agatatggta aatccttcat ttccctcagc acgccaaccc
     3121 cgtaattaat gtcatccttg tactgcgaat taagggtttg gatcagcata tatcctgcct
     3181 ctcccacctt gcccgacaaa acggcatatg aagaactgcc ctgtacgtcg gtcaattcat
     3241 taaaaatagc atcgtagtta taaaccaatg gagtaatgcg aatatcggca caggtaaaat
     3301 atttaccatt gatcgaaata ctcaaatggg gatcattggc ttttttcagt acttgtaata
     3361 accttacggc aaattcattt tcaaactcag attttataat ggttggtttt atcgaatcca
     3421 aaagtttttt ccaattgatg ccgtgcatat ccttatagga ataattggtt aaaaaatggg
     3481 cgcaaaactt ctcataattc gtcctgttta aaatagtatc aacaagggtg ggatgaatgg
     3541 tggtctttgt acggaaggcc aggtaggtag cgtccatggg tgtcccggct tcatttctga
     3601 aattattgta tgtgttgtta ttcatgggca cccggtaaaa tttattggga ccaagggtta
     3661 tgggcaatgt aaggatgcgc tttgtcttcc ataccggttt tgaagtagta gtaaccatat
     3721 caggatcatc gataaacgaa tagcccgttt gcatatcctg gtcaaattca atttcgattg
     3781 ctgttaaacc cggatccaca ttgcaatcgc caaattcggg aaccgaacgg attatgcgcg
     3841 gcgggttgat ggtcgtttgt gccagcaggc tcgaataggt aaggacaaca aaaaaggcta
     3901 acaagtaaaa tagtttcata gcattaggtt ttttatttat tattggtctt caatactctt
     3961 tcgtatctgt tgcagtttta tcctccgcct ctcctaaaaa taccttgccc tgctgcctgc
     4021 agaaattatt tgaataaccg attgatcttc aataataaaa tccaaaatac gcatgaagat
     4081 ccaatcgttt tcacttttta aaaacgaatt tattgtttac aaatattatg ccaaatttga
     4141 tgtatataag tcatataaat atttattttg aagtaataca atgctgttat ataagctgat
     4201 gttcattttt tcaaaaattg ttattaatat gaatttaatt atgaaagtat tttgaatagc
     4261 tttttattca gttacaactt ttatttttct ttgtctatat tggaattatt gatattttta
     4321 ttggatgaat gaaatgtcta tttaaaaact taaaccctcc tctgagtgcc aaaaatggac
     4381 cccgtatttt ttcccagtac tgctgaattt cgaaaatggc tggaaggcaa tcaccagtca
     4441 gcggccgaaa ttttggttgg gtattacaag gtaaatacag gcaagccatc gatgaactgg
     4501 tccgattcgg tggatgaagc cctttgctat ggctggattg acggagtgcg ccgatcggtt
     4561 gatgcgcaaa gttattgtat acggtttaca ccccgccgaa caaaaagcaa ctggagccgt
     4621 gtaaatattg aaaaggtgga aaagcttatc cgggaagaaa gaatgcaacc agctggcctg
     4681 gcagcttata ataacagagc cgaagcacga tcagaaatct acagctatga aaatcagcca
     4741 gataagcttt ccgaggatct ggaattaatt ttc
//
LOCUS       DATDNM010000161         4261 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_768851, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000161 DATDNM010000000
VERSION     DATDNM010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4261
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_768851"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(404..826)
                     /locus_tag="VI413_02735"
     CDS             complement(404..826)
                     /locus_tag="VI413_02735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913567.1"
                     /translation="MAMKQPNNHIEFYKGDFEYSPQVSGGATSVKILMIDWARLFSWK
                     SGDVSGETQPTTPLNISMGASLVADPVISVLSAVIPVLGENAKGAVSNYALYDMMKKN
                     PGYDVVIYPQYETKKFVIPFFYSKTTVIATARLGKIKE"
     gene            1138..2655
                     /gene="guaA"
                     /locus_tag="VI413_02740"
     CDS             1138..2655
                     /gene="guaA"
                     /locus_tag="VI413_02740"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEY6913568.1"
                     /translation="MEKIIILDFGSQTTQLIGRRLRELNEYCEILPYNKFPEQTDDIK
                     GVILSGSPYSVYDPTAFKTDLSQIRGKFPVLGICYGAQFMAYTSGGNVESAGSREYGR
                     ANMTFIDNNDLLLKDIQAGSQIWMSHGDSITKIPEHFNKIASTDDVELAAFKVEGEQT
                     WGVQFHPEVYHTLDGTQLLENFLNICGCKRDWSPASFVESTVAELKKQLGNDKVVLGL
                     SGGVDSSVAAVLLNKAIGKNLTCIFVDHGLLRKNEFENVMKDYEHLGLNVIGVNVKER
                     FYKALAGVSDPEQKRKIIGSGFIDVFDEEAHKIKDVKWLAQGTIYPDIIESLSITGTV
                     IKSHHNVGGLPEKMHLKLCEPLRLLFKDEVRRVGTELGMMHHLIKRQPFPGPGLAVRI
                     LGDITAEKVRILQEADDIFISGLREWNLYDMVWQAGVILLPVQSVGVMGDERTYENAV
                     ALRAVTSTDAMTADWAQLPYEFLAKMSNEIINKVKGVNRVVYDISSKPPATIEWE"
     gene            3102..3875
                     /locus_tag="VI413_02745"
     CDS             3102..3875
                     /locus_tag="VI413_02745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008024783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEY6913569.1"
                     /translation="MIDTHSHIYSEEFDTDRAETIQRAKEAGITHIILPNCDSETLPQ
                     MLSLEAEYPDYCYAAIGVHPTSVKENYREELALVKSELERRNWIAVGEIGIDLYWDKT
                     FLTEQIAAFQQQIDWALEYDLPVIIHVRNSFDETMEALAPYKNSGLKGVFHSFTGTVE
                     EAREIIEFGGFMLGINGIVTFKNSGLAAVVEQIDLKHILLETDAPYLTPAPHRGKRNE
                     SAYTLLVARKLAEVYNCSLEQIVGQTTQNALLLFKSLKK"
     gene            3922..4009
                     /locus_tag="VI413_02750"
     tRNA            3922..4009
                     /locus_tag="VI413_02750"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3956..3958,aa:Ser,seq:gga)
BASE COUNT         1373 a          866 c          783 g         1239 t
ORIGIN      
        1 tcttaaattg agcaaacagc gatactaccc cgaagctcag aaaaataata agaggtaaaa
       61 tctttttcat acacttgaag ttttaaacat tacaaataac aaagacatca aatttaactc
      121 actgttcatt ataataatca gtgtactaaa aacaatctcg ttcaattgaa tgtttctcac
      181 cctaaaacaa accttgtttc ttttaataca aataaatata gtttatctta tccaaccaat
      241 gatttaacct ccaatgactt atataaacaa caacggctca atttcaacta ttgcaaaaaa
      301 caatcgccaa acagcctgtt ttgaaataaa aatagcagac gtggtaaatt gaattcaatt
      361 caccacgtct gctaatcctg acacttttaa agtgcaaata tttctattct tttatctttc
      421 ccaagcgcgc tgttgctatc actgttgttt tggaataaaa aaacgggatc acaaactttt
      481 tagtttcata ctgcggataa attactacat cataacccgg attttttttc atcatatcgt
      541 aaagcgcata attgcttact gctcctttag cattttcgcc cagaacagga attactgcag
      601 acaaaacact tattaccgga tcggcaacta acgaagctcc cattgaaata tttaaaggtg
      661 tagtgggttg agtttcacca gacacatcac cacttttcca actaaataac cttgcccaat
      721 ctatcattag tatcttcact gaagtagctc caccactcac ctggggcgag tattcaaaat
      781 ctcctttata aaactcaatg tggttgtttg gttgtttcat tgccatattt gaaattgaac
      841 aactacttaa caaaacgcaa aataataaaa caacgaaata acttaacttc ttcatgtttg
      901 aatgttttgg ggtataattt tcttaatatt taatttgtat ggcacaaaat taataaatta
      961 ttttaaccaa caaggctatt ttactaaata tttaaaattg atggccaaaa atacaattca
     1021 caaatcacaa gacatttcct cggtaatatt aaatcctttc cactatcttg cacaaccctc
     1081 acatttttcg tacttttgcg caacttttca gttcaactgc acaacgcatt caatcaaatg
     1141 gaaaaaatta ttattctcga ttttggttct caaaccaccc agttaattgg tcgtcgctta
     1201 cgcgaattaa acgaatactg cgaaattctg ccatacaata agtttcctga acaaaccgac
     1261 gacatcaaag gtgtgattct ctccggaagt ccttactctg tatatgatcc aacagctttc
     1321 aaaaccgatt taagccagat tcgtggcaaa tttccggtat tgggtatctg ttacggagct
     1381 cagtttatgg cttacacttc gggaggaaat gttgaatcag ccggttcacg cgaatatggc
     1441 cgtgccaata tgacttttat cgacaataat gatttattgc ttaaagacat acaagctggc
     1501 tcgcaaatat ggatgtcgca tggcgatagc attactaaaa tcccggaaca tttcaataaa
     1561 attgccagta ctgatgatgt ggaactggca gcattcaaag tagaaggcga acaaacctgg
     1621 ggcgtacaat ttcaccctga agtttatcac acacttgacg gaactcaatt gctcgaaaac
     1681 ttcctgaaca tctgtggttg taaacgcgac tggtcaccag cctctttcgt tgaatcgact
     1741 gttgccgaat taaaaaaaca attgggtaat gacaaagtgg ttctaggtct ttcaggaggt
     1801 gttgattcat cagtagctgc tgtattatta aacaaagcca ttggcaaaaa cctgacttgt
     1861 atctttgttg atcacggttt gcttcgcaaa aacgagttcg aaaacgtgat gaaagattac
     1921 gagcacctcg ggctgaacgt aattggcgta aacgtgaaag agcgctttta caaagcattg
     1981 gcaggcgttt ctgatccgga gcaaaaacgc aaaatcattg gaagcggctt tatcgatgtg
     2041 ttcgacgaag aagctcacaa aataaaagat gtaaaatggc tggcgcaagg caccatttat
     2101 cctgatatta tcgaatcgct ttctattacc ggaacagtga ttaaatcgca ccacaacgtg
     2161 ggcggacttc ctgaaaaaat gcacctgaaa ctttgcgaac cattacgtct gcttttcaaa
     2221 gacgaagtgc gccgtgtagg aacagagtta ggcatgatgc accaccttat caaacgtcaa
     2281 ccattccccg gaccgggatt agctgtacgt attttgggag acattactgc cgaaaaagta
     2341 cgcatactac aggaagctga cgatattttc atttcaggac ttcgcgaatg gaacctgtat
     2401 gacatggttt ggcaagcagg cgtaattctg cttccggtac aatcggttgg tgtaatgggc
     2461 gacgaacgta cttacgaaaa tgcagtagca ttacgtgctg taacttccac cgacgccatg
     2521 acagccgact gggcacaact tccttacgag ttcctggcca aaatgtcgaa cgaaattatc
     2581 aacaaggtaa aaggtgtgaa ccgcgtggtg tatgacatca gctcaaaacc gcctgcaaca
     2641 attgagtggg aataaaataa attaaatatt tatcctcaaa gcgtcctgat tcaataagaa
     2701 ctatcatttg taagacagtt gaaaatctat actaagagtg gactgagttg ttcccccata
     2761 cttgcctgca ttgcattagt tagttgccca ttccactaac accgttgtgg ttactttgac
     2821 aggtacgtgt caaacactct gacaggtacg agtcaaacag cttgacaggt acctgtcaag
     2881 gtacttaatg tatccttatt aaagtatcac atacgactta gatagatagt atagacaagg
     2941 agcgaatgca gtagtttatg attcggctag tggaatagta cttcctgtat attacggcct
     3001 gaatgtttta ctctataggc ggcgttgaat tatcaagtct taataaaatt gcaggacact
     3061 ttgcggataa acattaaatt atacgattta tagattttaa attgatagat actcattccc
     3121 atatttattc cgaagagttt gacaccgatc gtgccgaaac tattcaacgt gccaaagaag
     3181 ctgggattac gcacatcatc ctgcctaatt gcgacagtga aacattacca caaatgctga
     3241 gtctggaagc cgaatatcct gattattgtt atgcagcaat tggagtacac cccacaagcg
     3301 taaaagagaa ttatcgggag gaactagcct tggtaaaatc ggaactggaa cgccgtaact
     3361 ggattgctgt tggcgaaatt ggtattgact tgtattggga caaaactttt ctgacagaac
     3421 agatagctgc atttcaacaa caaatcgatt gggcacttga atatgatctg cctgtaatca
     3481 ttcatgtccg caattcgttc gacgaaacaa tggaagcatt agctccgtat aaaaattcag
     3541 ggttgaaagg tgttttccac agttttaccg gaacagttga agaagcccgc gagattatcg
     3601 aatttggagg ttttatgctt ggaatcaacg gcattgtgac tttcaaaaat tcagggttgg
     3661 cagctgttgt tgaacaaatc gacctgaaac acattctgtt ggaaaccgat gctccttatc
     3721 tcacccccgc cccacatcgt gggaaaagaa atgaaagtgc atacacccta cttgttgcac
     3781 gcaaactagc cgaagtatac aactgctcac tggaacaaat cgttggacaa accacacaaa
     3841 atgccctatt attatttaaa agtttaaaga aataatattt tttattcggt atatttttat
     3901 acttttgcaa ttccaaaaaa cggaaaggtg ctcgagtggt tgaagaggca cgcctggaaa
     3961 gcgtgtatac ccctaaaggg tatcgagagt tcgaatctct tcctctccgc ttaaaacaat
     4021 gattatcaag aataaaaaag gactaaaata aaattcagtc ctttttctat ttttatagat
     4081 tcctatttac ttggatgctg aatcatcttt ttcaagctca agattaactg ttgtattatc
     4141 ccatttgttc atttgtcctg ttcctaaatc tacaataaaa ccaggccaga ataggatatt
     4201 ccatagagag gtcgtattga aagtagactc taaaataaaa ggcaatgtct tatatccttc
     4261 t
//
LOCUS       DATDNM010000162         6878 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_662126, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000162 DATDNM010000000
VERSION     DATDNM010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6878
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_662126"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..726)
                     /locus_tag="VI413_02755"
     CDS             complement(<1..726)
                     /locus_tag="VI413_02755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007480646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6913570.1"
                     /translation="MRRLTLILSCIFLFTGFISAQTITVSGTVVDELGEPIIGATIFP
                     KENKQTGTVTNIEGKFSLKVSNQCKTIVFSYVGMKSQELAVKPVLNVKLQPDNQQLEE
                     VVVNGMVKVDKRLFTGATDKLDAAKTKIDGITDVSRALEGRSAGVSVQNVSGTFGTAP
                     KIRVRGATSIYGNSKPLWVVDGVVVEDAIDVSSDDLSSGNAETLISSAIAGINADDIE
                     SFQILKDGSATSIYGARAMAGVVV"
     gene            1055..2434
                     /locus_tag="VI413_02760"
     CDS             1055..2434
                     /locus_tag="VI413_02760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913571.1"
                     /translation="MKQLIKISSFFTLIALFTLTSCGKNEVTNISLNKSAIAINVGQS
                     DSVITTITITGDMNQQPVTWTAGDSKIISVEEGVSKDASNKSESLSKTIVVTGLAAGQ
                     TTLTIKAGEKTAVCQISVNQTNYNFNKTLTSNWGDYYETGNNSFDMYLLENSLSIDTS
                     GNISGTGTFLYIDFSVPITQNAMIAGDFTSSYNGEINTFFPGEVYENNIYGTRIVTVY
                     NDSAVITLVKDGHYSITYAGDNFMIEGDLITETNEIVHFSYNGIMPVADRREVPVELS
                     PAFTQGRLYYFGDAYNSGTANNFVAYLATKDVNFSDSIINGEVLVLELNAALTATDAL
                     PNATYNMMPELTTENLIPATLVPGYLTTDGDKWGCWYFGETTKKIKTGNAVISKSGDQ
                     YTINYQLFDRFGSKISGTYTGALTYYNATASSGIAAAKIKKSSTKVRSFTTNTVRKIT
                     KMKTFRYKR"
     gene            complement(2866..3834)
                     /locus_tag="VI413_02765"
     CDS             complement(2866..3834)
                     /locus_tag="VI413_02765"
                     /inference="COORDINATES: protein motif:HMM:NF020111.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1735 domain-containing protein"
                     /protein_id="HEY6913572.1"
                     /translation="MNKIINKVFPVIVLAFVLTLSSCLSDSDYADNWIGTKKTQDQNF
                     VEVHLTSSENSNLVSRAYPVIGRDTTITKFIPINLTSGPAASDVTITYERLDTLNSAI
                     VDSLVNIDGLILADASKITDLNQDSKVVIPAGSSTGYIAVKLNPDNLIGSTYLFGIKI
                     TSISDPKYTLSNLSTGIIKFGAANDYDGEYINEGTFVDVTNANFKAAYPLTVHLVTQD
                     ATSVAYFDVDIWGDFFHAFMNGTSYSGYGSFAPVFKFDENDNVISVVNYYGQPAGNGR
                     SAELDPSGVNKFDRSTRTLKVKYWMNQPGAAHRTYFDETFTYVGPR"
     gene            complement(3921..5480)
                     /locus_tag="VI413_02770"
     CDS             complement(3921..5480)
                     /locus_tag="VI413_02770"
                     /inference="COORDINATES: protein motif:HMM:NF024152.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusD/RagB family nutrient-binding outer membrane
                     lipoprotein"
                     /protein_id="HEY6913573.1"
                     /translation="MKKIRNILNLSLLAVVLTTSSCSDFLDVNKDPNRVTGDNITPDL
                     IFTQAENAVGVRQASRFIFMNNWMGYWSRSGTFIVEQEETTYKVANTFTENNWDQAYN
                     ILFDLYQVKTRALAANDSVLTGASMVLSAKLWQETVDQFGAVPYSQAFDYVKYPRPAY
                     DKATDIYADLLTQLDKAISYLDATAPKSSFAKTDIIFARGIAIKELPTVVAKWKKLAN
                     TIKLRIYLRQSEKGFVPTAAQIAKITADGGFFAAGEDVSVNPGYTNQTDKQNPFYAAF
                     GLTASGAPATTNNKPNNYFVKTILGSTDARLTRLYSNASGKIDGTDYGALGGNKIPNG
                     ATITGTEIGPGLAGSSEQDQFIMPSFESLFFQAEATARGWLPGGDAAAKALFESGIKQ
                     SFRWLGVTTTKTLLTGTAITDSISDKYIQNVTTANWANSGTTAADKVKFIAFQKYIAL
                     CGVDAIESWSDLRRGVLVLPAGYLSNNPVRATNLPTILPYPQTEITTNKANLPERDKD
                     AIFTEKLFWQP"
     gene            complement(5502..>6878)
                     /locus_tag="VI413_02775"
     CDS             complement(5502..>6878)
                     /locus_tag="VI413_02775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913574.1"
                     /translation="KKMAYIDLTGRNDWDSRLAEANRSVFYPGASASVIMSDVFPSLK
                     DNSISYLKLRTAWNKSGNVNLAAYSTQAVYALGAGFPFGSNVGFTAGNTIPSPDLKPE
                     FVTTTEAGFELRLLEDRINLEATYFNQDCTNQILSVSQSWTTGYPTALANAASFRNSG
                     VEMDLSLTPLVKIGSGNFDLKINATYNNNEVTQTLGNIPVVLAGNSGFIQNAASNPTV
                     NNIAVVGQPAYSFQMTDYNRDPATGKVIVDAETGNPSVSSALIVKGRTLPLWVVGVSP
                     SYNIGNFSVSMTWDYKTGHNFYAGQGADMDFSGMSARSVEYGRQRFVFPNSVYQSGTA
                     TDGTPIYSNNTNILVSDGNYGFWTSKTQNTGVATNYFASAAAWRLREVNVTYNLPAKF
                     LRNNANFIKKASVSLIAKNLLMFLPESNQWGDPEFNYTTSGNTMGVSSAYQTPASRFY
                     GATVNVQF"
BASE COUNT         2286 a         1347 c         1138 g         2107 t
ORIGIN      
        1 taccaccaca ccggccatgg cacgggcacc gtaaatggaa gtggccgaac catctttcaa
       61 aatctggaag ctctctatat catcggcatt aatacccgca atggctgaag aaataagtgt
      121 ttcagcatta cccgatgata aatcgtcact ggaaacatca atggcatctt ccaccaccac
      181 accatccacc acccaaagcg gcttagagtt gccataaatt gaagtggcac cacgaacacg
      241 aatcttggga gcagtcccga aagtcccgga aacattctgc acagaaacgc cggcagatcg
      301 cccttccaac gcacggctca catcggtaat accatcaatc ttggtttttg cagcatccaa
      361 tttatcggta gcacctgtaa acaagcgttt atcaaccttt accattccgt ttacaaccac
      421 ctcttccaac tgttggttgt ccggctgcaa cttcacgttc agtactggct ttacagccaa
      481 ttcctgagat ttcatcccaa cataagaaaa aactattgtt ttacactggt tagaaacttt
      541 caatgagaat ttaccttcaa tattagtaac agtcccagtc tgtttgtttt ctttcggaaa
      601 gatagttgcc ccgataatcg gttcgcccaa ttcatcgaca actgttccgg aaacagttat
      661 agtttgcgca gatataaacc cggtgaataa aaatatgcag gaaagaatca aagtcaatct
      721 tctcatacga aaataatttt attttgatgg ccttatgaaa ttcatcgcaa ccagaagact
      781 tattgtaatt gaatttcaat aaagtgacag cagtttgaag caaaagaaca caaaaataca
      841 taaattaatc aaaacttaat tcaatttaaa gagattaaaa acaaccatga ttctaatgtt
      901 tactgcttat tcagttcccg aactatcaag taactataaa aacaagcagc aatacatgtt
      961 aagaaaaagg aattttcatt tactactcta ttgacaatta aattatttat cttacatttg
     1021 ttctgcttta taacaattta aacttaagcc taaaatgaaa cagctaataa aaataagctc
     1081 attttttaca ttgatcgcat tatttacact cacatcatgt ggaaaaaatg aagtaacaaa
     1141 catttcattg aacaaatctg caattgcaat aaatgttggg cagtccgatt cggttattac
     1201 aacaataacc ataacaggtg atatgaacca acagccggtc acctggactg ccggagattc
     1261 aaaaattatt tctgttgaag aaggagtatc aaaagatgct tctaataaat cagagtcttt
     1321 atccaaaaca attgtagtta caggattagc agccggacaa actaccctca ccattaaagc
     1381 tggtgaaaaa acagccgtct gccagattag cgttaatcag acgaattata acttcaacaa
     1441 aacgcttact tccaactggg gcgattatta cgaaaccggg aataatagtt ttgacatgta
     1501 tctgcttgaa aactctttaa gcatcgatac ttcaggcaat atatccggaa caggaacttt
     1561 tctatatatt gatttcagcg ttccaattac acaaaatgcg atgattgcag gtgattttac
     1621 ttcttcatat aacggggaga taaatacatt tttccctggc gaagtttatg aaaacaacat
     1681 atacggaaca cgaattgtca ccgtttataa tgattcggca gtgatcacat tagtgaaaga
     1741 cggacattac tcaattactt acgctggcga caacttcatg atagaaggcg atttgattac
     1801 tgaaacaaat gaaatagtac atttctcgta caatggaatt atgccggtag ctgacagaag
     1861 agaagtaccg gttgaactat ctccggcatt tacccagggc agattatatt attttggaga
     1921 tgcttacaac tcggggacag ccaataactt tgttgcttat ttagccacga aagatgtcaa
     1981 cttttccgat tccattataa atggcgaagt attagtattg gaattaaatg cagcgctcac
     2041 agcaaccgat gctcttccta acgcgactta caatatgatg ccggaactta ctaccgaaaa
     2101 tttaattccg gccacgttgg tcccgggcta tcttaccaca gatggagaca agtggggctg
     2161 ttggtatttt ggcgaaacaa caaaaaagat caaaacgggt aatgcagtta ttagcaaatc
     2221 cggcgatcaa tatacaatca attaccaatt gtttgacagg ttcggttcga aaatatcagg
     2281 cacctatacc ggtgcattga catattacaa tgcaaccgca agtagcggta ttgctgctgc
     2341 caaaattaaa aaatcatcaa ccaaagtaag aagttttaca actaacacag ttcgtaaaat
     2401 aactaaaatg aaaactttta gatacaaaag ataaacttca acaatttaaa taaaaaaggt
     2461 cagctgaaat tcagttgacc ttttttatac tattacacga agaaacactt gaaataaacg
     2521 ttgttctatc ttgatattat attgtataat actttaagta atgctaaatt catcattagt
     2581 aagaactatt aaagtgtagt gctttgcttt tctttatcgg cttacgttgt ttagtagaaa
     2641 aacaaatacc ttttgaatca acgtttttga atgcgaagct taaatagcaa ttactagtct
     2701 ctacaaatgc ttattaaaat caattaactc caacaaacca gacaattaat aacaaataat
     2761 cacataaaaa attcaaaact aactgttttg aatgtattca atataataat aaaaaaaacg
     2821 aacgactcgc atgaatcgtt cgttttttag aatatactta taggattatc ttggtcctac
     2881 ataagtaaac gtttcatcaa aatatgtacg gtgggccgca cctggctgat tcatccaata
     2941 ttttactttt aatgttcttg tagaacgatc aaatttatta acaccagatg gatctaattc
     3001 agctgacctt ccgttaccag cgggttgacc atagtaattt acaacagaaa tcacattatc
     3061 attttcatca aacttgaata ctggagcaaa agaaccatat ccactatatg atgttccatt
     3121 cataaatgca tggaagaaat caccccaaat gtcaacgtcg aagtaagcaa cggaagttgc
     3181 atcttgagta accaaatgca ctgttaatgg gtaagctgct ttgaaattag cattggtaac
     3241 atcaacaaaa gttccttcgt taatatattc accatcatag tcatttgcag caccaaattt
     3301 aattatccct gtagataaat tactaagagt atatttagga tcactgatcg atgtaatttt
     3361 tatgccaaat aaatatgtgc ttcctattaa attatctgga ttcaatttta ctgcaatata
     3421 accggtgcta gaacctgcag gaataacaac tttcgaatct tgattcaaat ctgtaatttt
     3481 gcttgcatct gctaatatca atccatcaat atttaccaat gaatcaacta tcgcggaatt
     3541 tagggtatcc aaacgttcat aagtaatagt tacatcactt gcggcaggac ctgaagttaa
     3601 attaattggg ataaactttg ttattgttgt atcccgacca attacaggat aagcacgaga
     3661 aaccaaatta gaattttcgg acgaagttaa atgtacttcg acaaaatttt gatcttgagt
     3721 ttttttcgtc ccaatccaat tgtcggcata atcactgtca cttaagcaag agcttaatgt
     3781 caacacaaag gccaacacaa tgacaggaaa aactttattt attatcttat tcataattat
     3841 atttattttt aagttttaat tatactagta tttgttgttt gttcaatcaa caaatactag
     3901 cattaattta atgattctta tcaaggttgc cagaaaagtt tttcagtaaa tattgcatct
     3961 ttgtctcttt caggcaaatt tgctttattt gtagtaatct cagtttgtgg atatggtaat
     4021 atagttggca aatttgttgc tctaacaggg ttatttgaca aataacctgc tggtaaaact
     4081 aacacaccac gtcttaaatc cgaccaagat tcaattgcat caacaccaca taaagcaata
     4141 tatttctgaa aagcaataaa tttgacttta tcagcagctg ttgttcctga attagcccaa
     4201 ttagcagttg ttacgttttg aatatactta tcgctaatac tatctgtaat agcagttcct
     4261 gtaagtagag tctttgtagt tgtaacaccc aaccaacgaa atgattgttt gattccgctt
     4321 tcaaacaaag ccttagcagc ggcatcacct cctggcaacc atcctcttgc agttgcttca
     4381 gcctgaaaga atagactctc gaaagatggc ataataaatt gatcttgttc cgaagatcca
     4441 gctaaaccag gaccaatttc agtcccagtt atggtagctc cattcggaat tttatttcca
     4501 cctaacgcac cgtaatctgt accatcaatt ttacctgaag cattagaata cagtctagtc
     4561 aaacgcgcat ctgttgaccc taaaatagtt ttaacaaaat agttattggg tttattatta
     4621 gttgtcgcag gtgcaccaga agcagtcaaa ccaaatgctg cataaaatgg gttctgttta
     4681 tcagtttgat ttgtatagcc tggattaaca cttacatctt cgccagctgc aaaaaatccc
     4741 ccatcagcag taatttttgc aatttgagct gcagttggaa caaatccttt ttcagattga
     4801 cgtaagtaaa tacgtaattt aatagtgttt gctaatttct tccactttgc aactactgtc
     4861 ggtaattcct ttatggcaat tccacgagcg aaaataatat ccgttttagc aaaactcgat
     4921 ttcggagcag tagcatcaag gtatgatatt gctttatcca attgtgtcaa taaatcagca
     4981 taaatatctg tcgctttatc ataagctgga cgaggatatt ttacataatc gaatgcttgt
     5041 gagtaaggta cagcaccaaa ctggtcaact gtttcttgcc atagtttagc tgacaacacc
     5101 attgaagcac ctgtcagaac agaatcatta gctgctaagg ccctggtttt tacctgataa
     5161 agatcaaata aaatgttgta agcttggtcc cagttattct cagtaaaagt atttgcaact
     5221 ttataggtag tttcttcttg ttctacaata aatgtacccg agcgcgacca atatcccatc
     5281 cagttattca taaaaataaa tctggaagct tgtcttacac caacagcatt ttcagcttga
     5341 gtaaaaatca agtcaggagt aatattatct ccggttacac ggtttggatc tttgttcaca
     5401 tccaaaaagt cactgcaaga gcttgttgtc agaacaacag ccaaaagcga caaattcaat
     5461 atatttctaa tttttttcat atctctcaag ttttatatat tttaaaactg tacattaact
     5521 gttgctccat aaaatctgga agctggtgtt tgataagcac tacttacacc cattgtatta
     5581 cccgaagtgg tgtagttaaa ttctggatcg ccccattggt ttgattcagg taaaaacatc
     5641 aataaattct tagcaatcaa acttacagat gcttttttaa taaagtttgc attatttctc
     5701 aaaaattttg caggcaaatt ataagtaaca ttcacttcac gtagcctcca tgctgcagca
     5761 cttgcaaaat agttggtagc aacacctgtg ttttgtgttt tacttgtcca gaaaccatag
     5821 ttaccatcag aaactaagat atttgtattg ttagaataga ttggtgtacc atcagtagct
     5881 gttccagatt gataaacaga gttagggaac acaaaacgtt gacggccata ttctactgaa
     5941 cgggcagaca tcccagaaaa gtccatatca gcaccttggc cagcatagaa attatgacct
     6001 gttttataat cccaagtcat tgagacactg aagttaccaa tattataaga tggcgataca
     6061 ccaactaccc aaagaggcaa cgttctacct tttacgatta aagcggatga aacagatgga
     6121 tttccggttt cagcatctac aattactttt ccagttgcag gatctctgtt ataatcagtc
     6181 atttggaatg aataagcagg ttgtccaaca acagcgatat tatttacagt tggattactt
     6241 gctgcatttt gaataaatcc actgttacct gccaaaacta ccgggatatt accgagtgtt
     6301 tgggtaactt cgttattatt gtatgtagca ttgattttca aatcaaaatt tccgctccct
     6361 attttaacaa gtggagttag tgacaaatcc atttcaacgc ccgagtttct aaaacttgct
     6421 gcatttgcta aagctgttgg atagcccgtg gtccacgatt gagaaacgga taaaatttga
     6481 tttgtacaat cttgattaaa ataagtagcc tccaaattaa tgcggtcttc taataatcta
     6541 agttcgaaac ctgcttctgt agtagttaca aactcgggct ttaaatctgg gcttggaatt
     6601 gtatttccgg cagtaaaacc aacattactt ccaaatggaa agcctgcacc cagagcataa
     6661 acagcctgag tagaatatgc agcgagattc acattacctg atttattcca tgcagttctt
     6721 aatttcagat aagaaattga gttatctttt agcgatggaa aaacatcaga catgattaca
     6781 gaggcacttg cacccggata aaataccgaa cggtttgctt ctgctaatct gctatcccag
     6841 tcattacgac ctgtcaagtc tatatatgcc attttttt
//
LOCUS       DATDNM010000163         2283 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1730425, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000163 DATDNM010000000
VERSION     DATDNM010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1730425"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..877)
                     /locus_tag="VI413_02780"
     CDS             complement(<1..877)
                     /locus_tag="VI413_02780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002559493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6913575.1"
                     /translation="MKNSKSKTLSLLLVLFVISFQTVSFAQKSGNPLFKGWYADPEGT
                     ILNNQYWIFPTYSAPYEKQVFMDAFSSSDLVKWTKHSHIVDTANIKWAKKAMWAPAII
                     RKDKRYFLFFSANDIQNNNSEGGIGVAVSDKPEGPFKDYLGKPLLDKFHNGAQPIDQF
                     VFQDKDGQYYMIYGGWGHCNIVKLQSNFKAFIPFADGTTFKEITPQGYVEGPVMFRRN
                     NKYYFMWSEGGWTGPDYRVAYAIGDSPFGPFTRIGLVLQQDARIATGAGHHSVIKVPG
                     TDEWYIIYHRRPLGET"
     gene            complement(964..>2283)
                     /locus_tag="VI413_02785"
     CDS             complement(964..>2283)
                     /locus_tag="VI413_02785"
                     /inference="COORDINATES: protein motif:HMM:NF039201.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913576.1"
                     /translation="NVSGHQWGSPGTNSDHALTTTELVNMYSSLADQVTYYKTYWNLN
                     AAIYTQLTDVETEINGLLTYDRIPKVNVNLFRAINERIINQNVISTVDVVPSSQKTAQ
                     TWKYTTTQPVSTWANTSFDDSAWKSGQGGFGTAGTPGGTIRTTWATTDIWMRQQFTLS
                     DCKRDELPKLALNLHHDEDCDVYINGVLAGSFNGYTSAYELDYIKKEARNVLIIGGKN
                     TIAIHCTQKGGGQFIDAGIVKTINTNDTTLAYSPKPLSGTTNQATELKLQWRPGNMAT
                     SHKVYLGTNALLPDSTLNSTQTDTTLIVSNLKEGKTYYWRVDEVTNNNVKTGYLWNFT
                     TKTSTGINNPTIKLSKIYPNPLKKGELLQLDLGANADKFDTVGIWSVNGILLLQQPIN
                     GMQKLNLNLQAHNLAPGVYFVRAEKTEHSVPHKNWCIFCNFRNRTNQ"
BASE COUNT          590 a          478 c          489 g          726 t
ORIGIN      
        1 ctgtctcacc caatgggcgg cggtgataaa tgatgtacca ctcgtccgtt ccgggaactt
       61 ttattaccga gtggtgacct gctccggtgg caatgcgggc atcctgctgc aaaacgagtc
      121 cgatgcgggt gaatggcccg aaaggcgagt caccaatggc ataagccacc cggtaatcgg
      181 ggcctgtcca acctccttct gaccacataa agtagtattt gttgttgcgg cgaaacataa
      241 ccggaccttc tacatagccc tgcggggtaa tttctttgaa agtagtgcca tcagcaaaag
      301 gaatgaacgc tttgaaattg ctttgcaact ttacaatatt gcaatgcccc caaccaccat
      361 aaatcatata atattggcca tctttatcct gaaaaacaaa ttggtcaata ggttgcgccc
      421 cgttgtgaaa cttatccagc aacggttttc ccagataatc tttaaacggg ccttccggtt
      481 tatcagaaac agccactcca attccgcctt ccgaattatt gttctgaata tcgttggcac
      541 tgaaaaaaag gaaataccgc ttgtctttcc ggataatggc cggtgcccac atggcttttt
      601 tcgcccattt aatgtttgct gtgtctacaa tatggctgtg cttggtccat tttaccaggt
      661 cggatgaaga gaaagcatcc ataaaaacct gtttttcgta gggtgcggag taagttggaa
      721 aaatccagta ttggttattg aggatagtgc cttccggatc ggcataccag cctttaaaaa
      781 gcggattgcc tgatttctgg gcaaaagaaa ctgtttgaaa agaaattaca aaaagtacca
      841 gtaatagtga gagagttttt gatttcgaat ttttcatgtt gttttatgta atgggtgaaa
      901 aaaatcaaaa taaccgtaag ttcacagtcc cacggttatc catttttaag tatttagttt
      961 gaattattga tttgttctat tcctgaaatt acaaaatata caccagtttt tgtgaggtac
     1021 tgaatgttcc gttttttctg ccctcacaaa ataaactccc ggagccagat tatgagcctg
     1081 taagttcaga tttagttttt gcataccgtt tatgggctgt tgcaaaagca atataccatt
     1141 caccgaccaa attccgacag tatcaaattt atcagcattg gcgcccagat ccaattgaag
     1201 taattctcct ttttttagtg gattcggata aattttggat agtttgatcg tcggattgtt
     1261 tattccggta cttgttttcg ttgtaaaatt ccacaaatat ccggttttta cattgttgtt
     1321 agttacttcg tcaactctcc aataatatgt ttttccttct tttaaattgc tgacaattaa
     1381 agttgtgtct gtttgtgtgc tgttcagggt tgaatcgggt aaaagggcat ttgttcccaa
     1441 atatactttg tgcgaggtag ccatattacc cggacgccac tgcaatttca attccgttgc
     1501 ctggttggtt gtccccgaca acggtttagg gctgtaagcc agcgtagtgt cattggtgtt
     1561 gatcgttttt actattcccg catcgataaa ttgtccacca cctttctggg tacaatgaat
     1621 ggcaattgta ttctttcccc caattatcaa tacattacgc gcttcttttt tgatataatc
     1681 aagttcgtag gcagaagtgt atccattaaa agaaccggcc agaactccat taatatacac
     1741 gtcgcaatcc tcgtcgtgat gaagatttag ggctagtttt ggcaattcat cacgtttgca
     1801 gtcgctcagc gtaaattgct ggcgcatcca tatatcggtt gtggcccagg ttgtgcggat
     1861 agtgcctccc ggagttcctg ctgttccaaa acctccttgt cccgatttcc acgcgctatc
     1921 atcaaaagac gtgttagccc aggtagaaac aggttgtgtg gttgtatatt tccaggtttg
     1981 tgctgttttt tgagatgatg gtaccacatc aactgtagaa atcacgtttt gattgataat
     2041 acgttcgttg atggctctga atagattgac attcactttt ggaatgcggt cataggtcaa
     2101 taaaccgtta atctcagttt ccacatcggt aagttgcgta taaatggcag cattcaggtt
     2161 ccaatacgtt ttgtaatagg ttacctggtc ggccaggctt gaatacatgt ttaccagttc
     2221 ggtggtcgtt agggcatgat cgctattcgt tcctggcgaa ccccattggt ggccagaaac
     2281 att
//
LOCUS       DATDNM010000164         4473 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_769029, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000164 DATDNM010000000
VERSION     DATDNM010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4473
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_769029"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1005)
                     /locus_tag="VI413_02790"
     CDS             complement(<1..1005)
                     /locus_tag="VI413_02790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010801579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913577.1"
                     /translation="MKRLMYLFSLVAFALTGCENQMTETVTYKINEPVFMPSSTFRNS
                     VKVSAEPHKITNLGKMCFYNDYLYISEPEKGIHIIDNRNPENPAIVGFIELMGNADLA
                     IRNGLLYADSYIDLVWFDISNPALPELKGRLDSIFPTALPITDNQYGIDYAQCYGEKR
                     QGVVIGWKLTEKTEDVNHYTGGWWRGGMYDDVAVLATGSSSNSTGINGSMSRFTIYND
                     HLYSVINNQMNIFDMTGDTPKKAAENTYLWGNVETIFSYKDNMFMGTPTGMLIYSVKD
                     PLKPEYQSSITHAYGCDPVVVDNDLAYVTVHSGNTCGQKTNELFIVDVKDVKNPKQLV
                     S"
     gene            complement(1027..2253)
                     /locus_tag="VI413_02795"
     CDS             complement(1027..2253)
                     /locus_tag="VI413_02795"
                     /inference="COORDINATES: protein motif:HMM:NF012308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serpin family protein"
                     /protein_id="HEY6913578.1"
                     /translation="MKKLFQLFAIILFAAGCSGQNDPLPAPEDAKPIVLRVGLEKRVT
                     QDNEFAFDLFKKTIETSGETNVFVSPLSVSIALGMTWNGANGQTKTEMETALKMSGLS
                     ATDINDYYKVMQTTLPTIDPTTKLSLANSIWYREGYPVKTTFMQTNTNYFNAEVREID
                     FAQAWAKDTINNWCARKTNNLITNVLDEIPDNAVMYLINAVYFKGIWRKQFETKKTFE
                     TNFTNEAKQSVKVNMMYQKDTFNYAEDDKAQYLDMPYGNKAFSMTVILPNEGKTTADI
                     LNNITVESWNNTLQSMTEQEVDVYMPRFKTKNKFLLNDELKKMGMKLAFDGPADFTGI
                     ANDDLLISRVIHDTYVEVTEEGTEAAAVTVVEIIKTSMPINPVFRVNKPFIYVIREKS
                     TGVILFIGKMGNVEKY"
     gene            complement(2291..2713)
                     /locus_tag="VI413_02800"
     CDS             complement(2291..2713)
                     /locus_tag="VI413_02800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913579.1"
                     /translation="MKRKNSYLKICFLITISLFFLPGCSELNQMGESGFLKGKISIGP
                     ICPVETVPPLPQCQPTAETYKAWQTSVWNQRKSRIITDIEPKLDGTFYLKLPAGKYVV
                     DFKNTQTNGIGANNLPVEITIVSADTTIVNIDIDTGIR"
     gene            complement(2745..4049)
                     /locus_tag="VI413_02805"
     CDS             complement(2745..4049)
                     /locus_tag="VI413_02805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913580.1"
                     /translation="MQNNNIHTDQPDVFSENIRQKLENHELPVDAACWNEIEASMNAG
                     KKKKVIPFWWWLSGGAAVATLALLLTLRPFSDSNIYVTKTANKNLQNKSITNNSNKEK
                     QDVNFKKISGNSTEKTFISNIEQTTKKSAESNRIKTTETRTETNLTLNKTITTDSIAQ
                     NKLTDYNKSNSEINNQIAEVTTPTTNNDSTATIAKKKYIPNSLIEETKTEPIAKTKNK
                     SEWLLAAAFGSGGSTSMNGTNDFLTADIGNKYFVAAQPNYTSIMTPNDFSQKNFMSPL
                     SFGLTVRKSLNKTFSLESGLVYTYLLSTFEKQNFISYDASLKLHYLGIPLNIVAQVWK
                     FPKWEVYISGGGMVEKGLQSIYVQHQYIGNRTFTTTAKTKIDGLQWSLNGAVGTTYKL
                     QRNIGIYFEPKFSYFFDNNQPVSARTDKPIVIGLTAGLRFQF"
     gene            complement(4071..>4473)
                     /locus_tag="VI413_02810"
     CDS             complement(4071..>4473)
                     /locus_tag="VI413_02810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005867502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6913581.1"
                     /translation="ILQDGFVKVFTKIDTFAGAGSFAGWIRRIFVTTALEYLRQNDAL
                     KQSESIDEYNYSIEDMDVSILDRISANDLMTCISKLPNGYRTVFNLYAIEGYSHAEIG
                     SILNISENTSRSQFMRARKMLQKTVLALFNS"
BASE COUNT         1112 a          865 c          915 g         1581 t
ORIGIN      
        1 ggaaaccaat tgttttggat ttttgacatc cttcacatct acaataaaca attcgtttgt
       61 tttttgtccg caggtatttc cggaatgaac ggttacatag gccaggtcat tgtctaccac
      121 caccgggtcg cagccgtaag catgagttat agatgattgg tattcgggtt tcagcggatc
      181 tttcacggag taaatcaaca ttccggttgg cgtgcccata aacatattgt ctttgtagct
      241 gaagattgtt tctacatttc cccagagata agtgttttct gcggcttttt tgggggtatc
      301 tcctgtcatg tcaaaaatat tcatttggtt gtttatgaca gaatataaat ggtcgttgta
      361 aatagtgaag cgtgacatag aaccgttaat acccgtgctg ttactgctgc ttccggtggc
      421 taatacggct acgtcatcat acattccacc tctccaccaa ccacctgtat agtggtttac
      481 atcttctgtt ttttctgtca atttccaacc aatgacaact ccctgacgct tttctccata
      541 acactgggca taatcaatgc cgtattggtt gtcggttatt ggcagggcgg ttgggaatat
      601 tgaatccaac cggcctttta gttcgggcag agcaggattt gaaatgtcga accaaaccag
      661 gtcgatatac gaatcggcat agagaagccc gttgcggata gctaaatcgg catttcccat
      721 taattctatg aatccgacaa ttgcgggatt ttcagggttg cggttgtcta taatatggat
      781 gcctttctcc ggttctgaaa tgtacaggta atcgttgtaa aagcacatct tacccaggtt
      841 cgtaatttta tgaggctcag cacttacttt tactgaattc cgaaaagtag aggagggcat
      901 aaaaacaggc tcattaattt tgtaagtaac cgtttcggtc atttgatttt cgcagccggt
      961 aagagcaaat gccaccagac tgaataaata cattaatcgt ttcataattt tatagattat
     1021 aatgtgttag tatttttcta catttcccat tttaccaata aagagaatta ccccggtact
     1081 tttttccctg attacataga taaatggttt gtttacacga aatacagggt tgattggcat
     1141 ggacgttttg ataatctcaa cgactgtaac tgccgctgct tcggtacctt cttcggttac
     1201 ttccacatac gtgtcgtgaa ttacccttga gataagcaaa tcatcgttgg caatgccagt
     1261 gaagtcagcc ggaccatcaa aagccagttt catccccatt ttttttaatt cgtcattcaa
     1321 caaaaattta ttttttgttt taaatctcgg catataaaca tccacttcct gctcagtcat
     1381 gctttgaagc gtattgttcc aactttcaac agttatattg ttcaatatgt cagcagttgt
     1441 ttttccttcg ttcggtaaaa taacagtcat gctgaatgct ttatttccat aaggcatatc
     1501 caggtattgc gctttatcat cttcagcgta attaaacgta tctttttggt acatcatgtt
     1561 gacttttact gactgcttcg cctcgttggt gaagttggtt tcaaaagtct ttttggtctc
     1621 gaactgtttt ctccagattc ctttgaaata aactgcattt attaagtaca taaccgcatt
     1681 atccggaatt tcatcaagta cgttggtgat caggttgttg gtttttcggg cacaccagtt
     1741 attgatggtg tcttttgccc atgcttgtgc aaaatcaatc tcgcgaactt cagcattgaa
     1801 ataattggta tttgtttgca tgaaagtcgt ttttaccgga tagccttccc gataccagat
     1861 ggaatttgca agactaagct tggttgtagg gtcaattgtc ggcagtgtgg tttgcataac
     1921 cttgtaataa tcattgatgt ctgtagctga caatccactc attttaagcg cagtttccat
     1981 ttcggtttta gtttgtccgt tggcaccgtt ccaggtcatg ccaagcgcaa tgctcacact
     2041 cagaggcgag acaaaaacat tcgtttcgcc cgaagtttca atggtctttt tgaataaatc
     2101 aaaggcaaat tcattgtcct gggttacacg tttttcaagt ccgacacgca gcacaattgg
     2161 ttttgcatct tcgggtgccg gaagtgggtc attttgtcct gagcaacccg ctgcgaataa
     2221 gattattgca aatagttgaa atagcttttt cataggattt gaggattata gggttaatgt
     2281 gtttgtaggt ttatctgatt ccggtgtcaa tatcaatatt cacgatagtg gtatcagcgc
     2341 ttacgattgt gatttcaacc ggtaggttat tggcaccgat accattggtt tgtgtgtttt
     2401 tgaaatctac tacgtatttg cctgcaggta gtttcaaata aaaagttcca tccagttttg
     2461 gttcaatgtc tgttattatt ctgctttttc tctggttcca aaccgaagtt tgccaggctt
     2521 tgtatgtttc cgctgttggt tggcattgtg gcaaaggggg tactgtttca accggacaaa
     2581 ttggtccgat tgaaattttt cctttcagaa agccgctttc tcccatttga tttagctcag
     2641 agcaaccggg caggaagaag agcgaaattg tgataagaaa gcagattttt aaatatgaat
     2701 tttttcgttt cattttcggg ataccgacaa attgtttctc tcatttaaaa ttgaaatctg
     2761 agtccggctg ttagtccgat tacaatcggt ttatctgttc ttgcactgac cggttggtta
     2821 ttgtcgaaga aataggagaa tttaggttca aaataaattc cgatattccg ttgcagcttg
     2881 taagttgtac ctacagctcc gtttagcgac cattgcaatc catcaatctt tgttttggct
     2941 gtagtcgtaa atgttcggtt tcctatgtat tggtgctgga cataaatgga ttgcaaccct
     3001 ttttcaacca tgccccctcc cgaaatatat acttcccatt tcggaaattt ccatacctga
     3061 gctacgatat tcaggggaat tcccagataa tgcagcttca ggctggcatc gtaactgata
     3121 aaattttgtt tttcgaatgt agaaagcagg taggtgtaaa ccaacccact ttcaaggctg
     3181 aatgtcttgt tcagactctt tcttactgta aggccgaaag ataacggact catgaaattc
     3241 ttttgagaaa agtcgttggg cgtcattata cttgtatagt ttggttgcgc cgccacaaag
     3301 tatttgttcc caatgtctgc cgttaggaaa tcattagtgc cattcatcga agtgcttcca
     3361 cctgaaccaa aagctgctgc cagtaaccat tcgcttttgt ttttcgtttt ggctatcggt
     3421 tcagttttcg tttcttctat caggctgttg ggtatgtatt ttttctttgc aattgtggct
     3481 gttgaatcat tgttggttgt tggagttgtg acctctgcaa tttgattgtt tatttcgcta
     3541 ttgcttttat tataatccgt cagtttgttt tgtgcgattg agtcggttgt aatcgtttta
     3601 tttaacgtta gattagtctc agttctcgtt tctgttgttt ttattctgtt tgattctgcg
     3661 ctcttttttg ttgtctgttc tatattgctg ataaaagttt tctctgtgct attcccggaa
     3721 atttttttga aatttacgtc ttgtttttct ttgtttgagt tgtttgtaat tgatttgttc
     3781 tgcaggtttt tgtttgcagt tttggttaca tatatatttg aatctgaaaa aggacgaagc
     3841 gtaagtaaca acgcaagagt tgctactgca gcacctccgg ataaccacca ccagaaagga
     3901 atgacttttt tcttcttgcc ggcattcatg ctggcttcaa tttcattcca acatgctgca
     3961 tctaccggca attcatggtt ttccagtttt tgccggatgt tttcgctgaa aacatcgggt
     4021 tggtcagtat gtatattgtt gttttgcatt gtgtttgctg atagtttttc ttaggaatta
     4081 aatagtgcga gaacagtttt ttgcaacatt ttgcgtgctc tcataaattg cgaccgcgag
     4141 gtgttttcgc tgatgtttaa aatagacccg atttctgcat gcgaatagcc ttcgatggca
     4201 tacaagttaa aaacggtccg ataaccattg ggtagctttg aaatgcaagt cattaaatcg
     4261 tttgcagaaa ttctgtctaa aattgaaaca tccatatctt caatggaata attgtattcg
     4321 tcaatacttt cactttgttt caatgcatcg ttttgcctga gatattcaag agctgtcgtt
     4381 acgaaaatcc gtctgatcca accggcaaac gagccggctc cggcaaatgt atctattttg
     4441 gtaaagactt tgacaaagcc atcctgcaat atg
//
LOCUS       DATDNM010000165         2957 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2051335, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000165 DATDNM010000000
VERSION     DATDNM010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2957
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2051335"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..556)
                     /locus_tag="VI413_02815"
     CDS             complement(<1..556)
                     /locus_tag="VI413_02815"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6913582.1"
                     /translation="MNYKLHKDHPWIHYLLLLFGVLCISWSAILVKLADVSGFGSGFY
                     RLFFGTLGIIPVWLYFKKPITDLRGIKVAIICGVLFACDIALWNTSIMLSKASISTLL
                     ANLAPVWVGIGALLFMKEKPNRIFWIGTAISIFGVTIIIGLNQILEANLNLGNGLAIV
                     ASMFYGAYLITVRKGRNTLDTFSFT"
     gene            complement(580..1419)
                     /gene="prmC"
                     /locus_tag="VI413_02820"
     CDS             complement(580..1419)
                     /gene="prmC"
                     /locus_tag="VI413_02820"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005810769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEY6913583.1"
                     /translation="MQTVLQHIKSELQGLYPETEIKSFSYLILEKLTGFTRTEILINK
                     NTLFSVEQHNVIESFIEKLKKFVPIQYILGETEFYGLTFNVNESVLIPRPETEELVDW
                     IRNENDRNGNLQLLDIGTGSGCIAISLKHEFPKATVDAFDISETALETAQSNANRNRL
                     EVNFSKVDILNTPDFDKKWDIIVSNPPYVLENEKSQIHPNVLENEPHVALFVPDNDPL
                     LFYREIALFAQKYLKDNGKLYFEINREYGQATVDLLSALGFQEIELRKDISGNDRMVR
                     GKK"
     gene            1500..2540
                     /gene="ribD"
                     /locus_tag="VI413_02825"
     CDS             1500..2540
                     /gene="ribD"
                     /locus_tag="VI413_02825"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEY6913584.1"
                     /translation="MNYELKYMLRCLQLARQGGGYTAPNPMVGAVLVCDDVIIGEGYH
                     HRFGEPHAEPNAINSVVDKDLLKLSTLYVNLEPCSHYGKTPPCANLIVSSGIPRVVIG
                     TLDPNPKVAGSGVEILRSAGIEVTVGVLEEECRKLNKRFFIFQEQKRPYVLLKWAQTR
                     DGFIDRKRTDISEPPLLISNNITKQLTHKMRSENQAILVGANTVLLDNPSLTVRNWTG
                     KSPVRIAIDRQGRIPENFNIKDGSIPTLIFTEKSQPDRKNVEYIQIEFNAENLKTILQ
                     KIYERNIHSLLVEGGATILNSFIDAGLWDEANVEISPVCITDGVAAPKICVQEISCEI
                     FENHQWLFFRKR"
     gene            2553..>2957
                     /locus_tag="VI413_02830"
     CDS             2553..>2957
                     /locus_tag="VI413_02830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLDc N-terminal domain-containing protein"
                     /protein_id="HEY6913585.1"
                     /translation="MTHILTTLIIVLYVYTIISTISVLLLENRNPVKSISWVLVLIFL
                     PLIGMGLYLLLGQDYRKKKIISKKSIRSVIDRPVASFDLHNLDTSMMSVNQLNLVKLL
                     YKNSEAAGYAKNKIEIFTDGKTTFEALFEAIEN"
BASE COUNT          857 a          592 c          623 g          885 t
ORIGIN      
        1 cggtaaatga aaatgtgtcg agcgtgttgc ggcctttccg gactgtaatg aggtacgctc
       61 cgtagaacat gctggccacg attgccagtc cgtttccgag attcagattt gcttccagta
      121 tctgattcag gccaatgata atggttaccc caaaaataga aatagctgtt ccgatccaga
      181 aaatacggtt cggtttttct ttcataaaga gtaaagcgcc gatacctacc cacaccggag
      241 ccagattggc caacagggtg gaaatggaag ctttcgaaag catgatggag gtgttccaaa
      301 gcgctatgtc gcaggcaaaa agcacaccgc agataatggc aacttttatg cctctgaggt
      361 cggtaatggg tttcttgaag tagagccaaa cgggtataat ccccaaggtt ccaaaaaata
      421 agcggtaaaa tccggatcca aacccgctga cgtcagcaag ttttactaaa atggccgacc
      481 atgaaatgca cagcacgcca aaaagcaaca aaagataatg aatccacgga tggtctttat
      541 gtagtttata gttcatgttt tttttcttac ctcttgcact tacttcttgc ctctgaccat
      601 tctgtcgttt ccggaaatgt ctttccgtaa ttcaatttcc tgaaatccca gcgctgaaag
      661 taaatcaacg gttgcttgtc cgtattcacg gttgatttca aaatacagtt tgccattatc
      721 cttgagatac ttttgggcaa aaagtgctat ttcccgataa aaaagcagcg ggtcattatc
      781 aggaacaaat aatgccacgt gtggttcatt ttccaatacg tttggatgta tctgagattt
      841 ttcattttcc aatacataag gcggattact gacaatgata tcccattttt tatcgaaatc
      901 gggagtgttg agaatatcca cttttgagaa atttacttcc aaccggttgc ggttggcatt
      961 gctttgtgct gtttcgagcg ctgtttccga aatatcaaac gcatcgaccg ttgcctttgg
     1021 aaattcatgt ttcaagctga tagctataca gccgcttccg gtaccaatat caagtagttg
     1081 caaatttcca ttacggtcat tctcatttcg gatccagtct accaattctt cggtttcggg
     1141 acggggaatc aatactgatt cgttcacgtt aaaagttagt ccgtaaaact ccgtttcgcc
     1201 caaaatgtat tgaatcggaa caaatttttt caatttttcg ataaaacttt caattacatt
     1261 gtgttgttca acagaaaaaa gagtattttt gttaatgagt atttcggtgc gtgtaaaacc
     1321 ggtcagtttt tcgaggataa gataactgaa actttttatt tctgtttcgg ggtataaccc
     1381 ctgaagttcg gatttgatat gttgaagtac ggtttgcatg atgcaaagat agttttaata
     1441 tgctaatttg ccaatatagc aatgattaca gtgctccctg aatttttatt ttgaatttta
     1501 tgaactacga attaaaatac atgctccgtt gcctgcagct ggcccggcaa ggtggtggct
     1561 atactgctcc aaaccccatg gttggtgccg tgctggtgtg cgacgacgta attattggtg
     1621 aaggctatca tcaccgtttt ggtgaacctc acgccgaacc gaacgccatt aattctgttg
     1681 tcgataaaga tttactgaag ctctcaacgc tatatgtaaa cctggaaccc tgctcgcatt
     1741 acggaaaaac gccaccttgt gccaatctga ttgtttcaag cggaattcca cgggttgtaa
     1801 tcggtacact cgatccaaac ccgaaagttg ccgggagcgg tgtggaaatc cttcggagtg
     1861 caggcattga agtcactgtt ggtgtgttag aagaagaatg ccgtaagttg aacaaacgtt
     1921 tctttatctt tcaggaacaa aagcgacctt atgttttgtt gaaatgggcg cagacccggg
     1981 atggttttat agatcggaaa cggactgata tttctgagcc gcccttactt atttccaata
     2041 atataaccaa gcaactgact cacaaaatgc gatcggagaa tcaggcaatt ctggttggtg
     2101 ccaacactgt tttgctggac aatccgtcac ttaccgtgcg gaactggact ggcaaatcgc
     2161 ctgtacgcat tgctattgac cgacagggac gaattccgga aaacttcaat atcaaggatg
     2221 gaagtattcc cacgcttatt tttacggaaa aatctcaacc ggacagaaag aatgtggaat
     2281 atatccaaat tgaatttaat gctgaaaacc tgaaaacaat tctacaaaaa atatacgaac
     2341 gaaatatcca ttctttactt gtggaaggcg gtgcaactat tctgaatagt tttattgatg
     2401 ccggactttg ggacgaagct aatgttgaga tttctcccgt ttgtattacc gatggcgttg
     2461 ctgcaccaaa aatctgtgtg caggaaatct catgcgaaat ttttgaaaat catcaatggc
     2521 tgttttttag gaaaagataa acacaatttg ttatgacaca catcctcacg acattaataa
     2581 ttgttttgta cgtttatact ataatcagta ccatatcggt gttgttattg gaaaatcgta
     2641 atcccgtaaa atcaatttcg tgggtgttgg ttctgatttt tcttccactg attgggatgg
     2701 gattatacct tctgttgggt caggattacc gaaagaaaaa gatcatttct aaaaaaagta
     2761 tccgaagcgt aatagaccgc ccggttgcct cgtttgacct tcataatctg gacacttcca
     2821 tgatgtctgt caatcagttg aatctcgtaa aattactata taaaaacagt gaagcagctg
     2881 ggtatgccaa aaataaaatt gagatattta cggacggcaa aaccacattt gaagcgcttt
     2941 ttgaagccat tgaaaat
//
LOCUS       DATDNM010000166         4465 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2051925, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000166 DATDNM010000000
VERSION     DATDNM010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4465
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2051925"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2481)
                     /locus_tag="VI413_02835"
     CDS             complement(<1..2481)
                     /locus_tag="VI413_02835"
                     /inference="COORDINATES: protein motif:HMM:NF037016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY6913586.1"
                     /translation="MGKWIHTLNKTNIGTKSIFIVVFSILVSFIDVSAQQGNAAVPFS
                     TDTTQLTIWNGKTYIPFFIKGVNMGIAKPGTQPGDLEATREQYARWFDQIKQAGFNCI
                     RIYTLHYPHFYEELEKYNLNNPQHPLFFFQGIWLNEELNGYLHDLYQMSDTFRVEIQE
                     NINCVHGNGVIGPRFGKAFGTYSANVSKWNLGYIIGRETAPYEVLTTNKNHPQLSSYS
                     GNHFAISEVPATEVWWTRQLDFAVNYEREHYGTERPVSVSSWPTLDPIHHPAEPNRDE
                     DTASVDLSKIKIIDAPAGLFISYHAYPYYPDFVSNDTTYKKYSDSFGPNSYLGYLKDL
                     KKHYSKFPLIIAEYGVPSSWGVAHYASSGMNHGGFDEAGQGETDIRILNTIKAANGGG
                     GIQFAWLDEWFKRTWITDPFDFLNRYLWHNITAAEQNFGLVKFTKKETYIPWKTFGST
                     DDITNVKALANYDFFQMEIGLKSPMDILGECWIAFDTYDSTLGESTLPTGIKIPNRSE
                     FALHITQHSAELFVTEAYDLFGIYHKELSDNQKLQSTATDGAPWNIVRWKNNSGAADV
                     QYIGDLKLNRSFQPVSSKDAVTISDTKINVRIPWSLLQVVDPSQMRVFHDNKATADTT
                     ETRVSDGIAVNILYKSKLYTPDNRFVWPMWNVVKDSDVVEQLKTSYWTMYNQLTNFNS
                     PAIAYPDTFDLSNVIYPYSIQAIDGLLKNDFDPDGSTVSAVLSQAPKNGFVELNPDGS
                     FTYSPKNGFIGTDVFSYCIFDGQSLSKANTVSLLVNNPNSVESVIAKSDLIKLYPNPA
                     KDFAVIESEIPISTLRIFDYQGKLLAQKL"
     gene            complement(2674..3435)
                     /locus_tag="VI413_02840"
     CDS             complement(2674..3435)
                     /locus_tag="VI413_02840"
                     /inference="COORDINATES: protein motif:HMM:NF016190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tim44-like domain-containing protein"
                     /protein_id="HEY6913587.1"
                     /translation="MKNLLKIRLLLLLPVLLISVDMFARAGGGGSIGGGGGNFKLIGF
                     IITIIYSIVISIVLFIKIKKSPETVDQVSENDLSWDYDELRHHAKKTFLKMQDAWMFR
                     NIDAVKEIITENLYDDYKVQLEEMKKNNEMNVLSSIEVKKIRIIGCEDYMEDSHDRFI
                     AHIHGEMIDYTIDEVTGDVIDNSTMETQDFTDTYHFIRKDKEWVLDYIDNFVTNFDVI
                     RTKNHQEHKNSTHTTPHPVPHIILPMKMTSKNLAH"
     gene            complement(3667..4107)
                     /locus_tag="VI413_02845"
     CDS             complement(3667..4107)
                     /locus_tag="VI413_02845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6913588.1"
                     /translation="MGRVSTYLNFVRETEAAFNFYKTVFGTEFNGEIMRFAGVPPQEG
                     MPELPEADKNLVMHMELPILGGHLLMGSDAPESMPFKLTFGNNSYIMLEPDTKEETRK
                     LFNLLSKDGKIEQQLEEMFWGGLYGSLTDKFGVKWMFNCSEEAK"
BASE COUNT         1340 a          835 c          808 g         1482 t
ORIGIN      
        1 aagcttttga gcaagtaatt tgccctgata atcaaagata cgcagcgttg aaataggtat
       61 ttccgattca ataaccgcaa agtctttagc cggattgggg tataatttaa tcaaatctga
      121 tttggctata acggattcta cactgtttgg attattcact aacaagctga ctgtattggc
      181 ttttgataaa ctttgaccgt caaagatgca atagctgaaa acatcagttc caatgaaacc
      241 gtttttagga ctgtaggtaa atgagccatc cggatttaat tcaacaaatc cgtttttggg
      301 agcttgtgac agcacggctg aaaccgttga gccatcgggg tcgaaatcgt ttttaagcag
      361 cccgtctatt gcctgaattg agtaaggata tattacattc gacaagtcaa atgtatcggg
      421 ataggcaata gcagggctgt tgaagttagt taactggtta tacattgtcc agtatgatgt
      481 tttcaactgt tccaccacat ccgaatcttt gaccacattc cacattggcc acacaaaacg
      541 attgtcggga gtatataact tgcttttgta cagtatgttt actgcaatac catccgagac
      601 tcttgtttca gttgtatcag cagttgcttt attgtcgtga aaaacacgca tttgcgaagg
      661 atcaacaacc tgtaaaagcg accatggaat tctcacgttt atctttgtgt ctgatatggt
      721 taccgcatct tttgaagaca ccggttgaaa actccgatta agttttaaat cgccaatgta
      781 ctgaacatct gcagcaccag aattattttt ccatcggaca atattccagg gtgctccatc
      841 agttgctgtt gattgtaatt tttggttgtc gctaagttct ttgtggtata tgccaaataa
      901 atcgtaagct tcagttacaa aaagctctgc cgaatgctgg gtaatgtgta aggcaaattc
      961 agatctgttc ggaatcttta taccggttgg caaagtagat tctcctaatg tagagtcgta
     1021 tgtatcaaaa gcaatccagc attcacccaa aatatccatt gggcttttca ggccaatttc
     1081 catttgaaaa aaatcatagt tagccaatgc ttttacgttc gtaatatcgt cggtgctacc
     1141 aaatgttttc cagggaatgt aagtctcttt cttcgtgaat tttaccagtc caaaattctg
     1201 ttccgcagca gtaatgttat gccacagata ccggtttaaa aaatcgaaag gatcagtaat
     1261 ccaggttctt ttaaaccatt catccaacca ggcaaactga attccgccac cgccattggc
     1321 cgcttttata gtgtttaaaa tccggatgtc cgtttcgcct tgcccggctt cgtcaaatcc
     1381 gccatggttc attcccgatg aggcataatg agcaactccc cagctggaag gaaccccgta
     1441 ttcagcaatg attaagggga atttggaata atgttttttc agatccttga ggtatcctaa
     1501 atagctgttt ggcccgaaac tgtcagagta ctttttataa gttgtgtcat tactcacaaa
     1561 atccggataa tatggatagg catgatagct gataaacaaa ccggccggag cgtcaatgat
     1621 tttgattttg gataaatcaa ccgaagcagt atcttcgtcg cggtttggct cagccggatg
     1681 gtgaataggg tcaagtgtag gccatgatga aacacttacg ggtctttctg taccataatg
     1741 ttctctttca tagtttactg caaaatccag ttggcgggtc caccatactt ctgtagcagg
     1801 cacttcgctt attgcaaaat gattgccgct gtaagaactt agttgagggt gatttttatt
     1861 ggttgtaagc acttcgtaag gagccgtttc ccttccaata atatatccca gattccattt
     1921 ggacacgtta gctgaataag tgccaaatgc ttttccaaat cgtggcccaa taacgccatt
     1981 tccatgtaca caatttatat tttcctgtat ttcaacccga aatgtgtcgg acatttgata
     2041 taagtcatgt aaatagccat tcaattcttc attcagccaa attccctgaa agaagaacaa
     2101 ggggtgttgt ggattattaa ggttgtattt ttcaagctct tcgtaaaaat gcggatagtg
     2161 caatgtgtat attctgatac agttgaatcc ggcttgtttt atctggtcaa accaacgggc
     2221 atattgttcg cgggtggctt ccaaatctcc cggctgggtt cccggttttg caattcccat
     2281 attcacaccc tttataaaaa aaggaatata cgttttccca ttccaaatgg ttaactgtgt
     2341 ggtatcagtt gaaaaaggaa cagcagcatt tccttgttgt gcagaaacat ctataaatga
     2401 aactaaaata gaaaatacaa caatgaaaat gctttttgtg ccgatattcg ttttatttag
     2461 cgtgtgaatc catttaccca ttttttcaaa taaattagtt gttttgttcc ccaaaactgt
     2521 gttgtgaaat tctaaatttt actttttata agcgtgaaga ttgtaataat tgtcaaagtt
     2581 aactattaaa tccattcacg acaaataaaa caattgtaat acaaacggca gcgaatatgg
     2641 ttcagaattt cacattaaat ttattttaaa taattaatga gctaaatttt ttgaagtcat
     2701 tttcataggt aagataatat gcgggacggg gtgtggagta gtgtgtgtac tatttttatg
     2761 ctcttgatgg tttttggttc ggatcacatc aaagttagtt acaaaattat cgatgtaatc
     2821 aagcacccat tctttgtctt tgcgtataaa atggtatgta tcagtgaaat cctgagtttc
     2881 cattgttgaa ttatcaatta catcacctgt tacttcatca atggtataat cgatcatttc
     2941 tccatgaatg tgggcaataa aacggtcgtg tgagtcttcc atataatctt cgcaaccaat
     3001 aatacggatt tttttcactt caatggagct aagaacattc atttcattgt tctttttcat
     3061 ttcttccaat tgtactttat agtcatcgta caaattctca gtaataattt cctttacagc
     3121 atctatgttg cgaaacatcc aggcatcctg catcttcaaa aacgttttct ttgcatgatg
     3181 tcttagttca tcataatccc acgataaatc attctcagaa acctgatcaa ctgtttcggg
     3241 gcttttctta atcttaataa ataatactat tgaaataact attgaataga taattgtaat
     3301 aataaatcct ataagtttaa agtttccacc accgcctcca atggaaccac ctcctccggc
     3361 acgggcaaac atatctacac taatgagtaa tacaggcaac aaaagcagta atctgatttt
     3421 taatagattt ttcatggtaa atagtagtta ggttagtatt cagaaaggtt gtaaacgaat
     3481 tgcaaatata attaattttc acatgtaata atatgtttta ttaccaaaaa tgatgattaa
     3541 gtaacgaaat ataagaatgt tagataaaaa tgataaaata aatgcataat aattaaggtt
     3601 gagtttgtcg taaaaaataa gggcttcact cacgcgaaac ccttaccttt tttatttttg
     3661 cagcctttac tttgcttctt cactacaatt aaacatccat tttacaccga atttatcggt
     3721 taaactgccg tacaaccctc cccaaaacat ttcttccaat tgttgttcaa ttttgccatc
     3781 tttcgatagc agattgaaga gttttcgtgt ttcttccttt gtatctggtt caagcattat
     3841 gtagctgttg tttccaaaag tcaatttgaa tggcattgac tcaggagcat cacttcccat
     3901 taataaatgt cctccaagta ttggaagttc catatgcata accagatttt tatccgcttc
     3961 aggcagttcg ggcatccctt cctgtggagg tacacctgca aatctcatta tttcaccatt
     4021 aaactcagtg ccaaaaactg ttttgtaaaa attaaaggcc gcttctgttt ctctgacaaa
     4081 gtttagatac gtgcttactc gtcccatttt ttttaatttt ttgattgtga ttaatagagt
     4141 tgattgttaa ggtcgaatca ttgttaatat tttgattcag tcatagttca gaataaacgt
     4201 aggaaatttg aaatagttcg tgagcagcaa cctgaattaa atatttatac ggttattcaa
     4261 catttttcat tatttcatgt tttaaaataa agagtcgtga taatctggta acataaaaat
     4321 atgaacctga atattaaaaa cgaaacgggt actttgaagg tcgtcgtttt aggacaaccc
     4381 ggatcaattg gaaaagtgcc gtccatcgac aagactttcg atgcgaaatc ttatgaatca
     4441 gttttgaaag gtgtatatcc tacag
//
LOCUS       DATDNM010000167         2907 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1411442, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000167 DATDNM010000000
VERSION     DATDNM010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2907
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1411442"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2311
                     /locus_tag="VI413_02850"
     CDS             <1..2311
                     /locus_tag="VI413_02850"
                     /inference="COORDINATES: protein motif:HMM:NF040164.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5723 family protein"
                     /protein_id="HEY6913589.1"
                     /translation="QNGQLISYMHPNGSIDNFYNALRRNTLMQSNLQLNLLSFGFRTG
                     KSYWNFTVNEKFNERFNVPKDLMKLMLYGTPDKNNNAYNLSTLGFDMSAYTEVGLGYS
                     RIVNDKLAIGGKLKFLSGTANVSSSLESLNLTAGIDQWTIKGGGSINYSSPANIGGTD
                     LENIDPTTPENPLDWVKPSGLGGAIDLGATYKLTNDLTLSASVIDLGLIRWNQNTKKA
                     SFNIDYEFHGLVNPKIDSFNQQSELFDSLLNSIKNSVEDTIVDNSAYVTKLAPKLNVG
                     AEYAFFNNKLSVGLLSSTMFYNNVAYEELTASINGRPIDWFNLSASYSILNGRMSNIG
                     AGLGVRTGFIHWFLSADYIPLQYTKPYPVNFGNQIVKLPLPYNTKGLNLAVGFNLVLG
                     NRKDADKDGVIDRKDKCPETPFGVVVDLKGCPVDTDGDGVPDYLDKCAKTPPEAYSLI
                     DQDGCPIDTDGDAVPDYMDKCPDTPAEAFGFIDAQGCPLDTDADGIFDYKDKCANTPA
                     GVKVDSVGCPLDTDGDGVADYKDKCPETPVAARTMVDSVGCPLDTDLDYVPDYLDLCP
                     NTPAEARAFVDKNGCTLDTDGDGVPDYLDKCPGTPVEARGAVDQNGCPRDTDGDGVLD
                     YQDNCPKIPGTVSNKGCPEIKKEIKKLFQKALQGIQFETGKYIIKPVSFQILNQIAAV
                     LVANPTYLIEVQGHTDNVGKPAANMTLSENRANAVKEYLIKKGVAATRMTSHGYGDTM
                     PVASNKTTKGKALNRRVEFVVSFEETIIE"
     gene            2499..>2907
                     /locus_tag="VI413_02855"
     CDS             2499..>2907
                     /locus_tag="VI413_02855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005856672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY6913590.1"
                     /translation="MGRAFEYRKATKMKRWGNMARVFTKLGKQITIAVREGGPEADTN
                     PRLRVLIQQSKKENMPKENVERAIKKAISKDEADYKEMVYEGYGPNGIAIVIETATDN
                     PTRTVANIRSYLTRHGGSLGTSGCLQFLFDHKCV"
BASE COUNT          916 a          483 c          653 g          855 t
ORIGIN      
        1 acaaaatggc caattgattt cgtatatgca tccaaacgga agtatagata acttttataa
       61 tgcactgaga agaaatacct tgatgcagtc gaatttacag ttgaatttat taagttttgg
      121 attcagaacc ggcaagtcat attggaattt tacagtaaat gagaagttta acgaaagatt
      181 taatgtgccg aaagacttaa tgaaattaat gctttacggg actccggata agaacaataa
      241 cgcatataat ttatcaacat tgggttttga tatgtctgca tataccgaag ttggtctggg
      301 atattcacgg attgtaaatg acaagctggc aattggtgga aaactaaagt ttctttccgg
      361 tactgccaat gtgtcgtcgt cgctagaaag cctgaattta actgccggaa ttgatcagtg
      421 gactataaag ggaggaggat cgataaatta ttcatcccct gcaaatatag gtggaactga
      481 tctggaaaat attgatccaa ctactcctga aaatcccctg gattgggtta aaccatcagg
      541 attaggtgga gcaattgatc tgggagctac ttataaactg actaatgatt tgacattgtc
      601 ggcttcagta attgaccttg ggcttatacg ttggaaccag aatacgaaaa aggcaagttt
      661 taatattgac tacgagttcc atgggttagt caaccctaaa attgattctt ttaatcagca
      721 aagcgagttg tttgattctt tgttgaattc aataaaaaat tcagtagaag atactattgt
      781 tgataactcc gcctatgtaa caaagttagc tcccaaactt aatgttggtg ctgaatatgc
      841 atttttcaat aataaattaa gtgtcggact gctttcaagc acaatgtttt acaataatgt
      901 tgcttatgaa gagttaacag cttcgataaa tgggcgtccg attgactggt ttaatttatc
      961 tgcttcttat tccatattaa atgggcgaat gagcaatata ggggctggat tgggggtcag
     1021 aacaggcttt atccactggt ttttatcggc cgattatatt cctttgcaat atacaaaacc
     1081 atatccggta aattttggta accaaatagt aaaattgcca ctaccttaca atactaaggg
     1141 attgaacttg gcagttggat tcaatctggt gttaggaaac cgcaaagatg ctgacaaaga
     1201 tggtgtgatt gacagaaagg ataaatgtcc ggaaacacct ttcggcgttg ttgtcgattt
     1261 aaaaggttgt ccggtggata cggatggtga tggtgttccg gattacctgg ataaatgtgc
     1321 taaaactccg ccagaagctt atagtctgat tgatcaggat ggttgtccga ttgataccga
     1381 tggcgatgct gttccggatt atatggataa atgccctgac acgcctgctg aagctttcgg
     1441 atttatcgat gctcagggtt gtccgctcga tacagatgct gatggcattt tcgattataa
     1501 agacaagtgt gcaaacactc cggcaggagt aaaagtagac tctgttggtt gtccgcttga
     1561 tactgatggt gatggtgttg ctgattataa agataaatgt cctgaaactc ctgttgcagc
     1621 acgcaccatg gtcgacagcg ttggttgtcc tttggataca gatttggatt atgttccgga
     1681 ttacctggat ttatgtccta atactccggc tgaggcccgt gcatttgtag ataagaatgg
     1741 ttgtacattg gatacagacg gcgatggtgt tccggattat ttggataaat gtcctggtac
     1801 accagttgaa gctcgtggag cagtcgatca gaatggttgt ccgcgcgata cggatggtga
     1861 tggagtgctg gattatcagg ataattgtcc gaagattccg ggtacagtat ctaacaaagg
     1921 ttgcccggaa ataaagaagg aaattaaaaa acttttccag aaagcgcttc agggaataca
     1981 gtttgaaaca ggtaaataca ttattaaacc cgtttcattc caaattctta accagatagc
     2041 agctgtgttg gttgcaaatc cgacttacct catagaagtt cagggacata ctgataatgt
     2101 tggtaaacct gcagctaata tgactttgtc tgaaaatcgt gctaatgcgg tgaaggaata
     2161 tcttattaaa aaaggagttg ctgcaacccg tatgacttcg catggttatg gtgatacaat
     2221 gccggttgca tccaataaaa caaccaaggg taaggcatta aaccgcagag ttgaatttgt
     2281 tgtttctttt gaagaaacaa taatagaata atcttgataa ataattagta aaaaaggagt
     2341 tgagtattca actccttttt tattatcaaa aaaaaacgaa acaaatgatg gttctttgcc
     2401 agggttttaa tacttttgtg agccgaaaca ggattttaca gtgtttcaat taaaatgaaa
     2461 agataattaa tcaaattttt agatattata aaaaaaccat gggaagagcg tttgaatata
     2521 gaaaagcgac caaaatgaaa cgttggggca atatggcccg cgtgttcacg aagttaggaa
     2581 aacaaattac aattgcggtg cgtgaaggcg gacctgaagc cgataccaat cctcgtttac
     2641 gtgtcttaat tcaacaatcg aaaaaagaaa acatgcccaa agaaaatgtg gagcgtgcaa
     2701 tcaaaaaagc gatatcaaaa gacgaggctg attacaaaga gatggtgtat gaaggttacg
     2761 gacctaatgg tattgctatc gttattgaaa ctgcaaccga caatccaacc cgtactgttg
     2821 ccaatattcg cagttatttg acccgtcatg gtgggtcact aggaacaagt ggttgtttgc
     2881 aattcttatt cgaccacaaa tgtgttt
//
LOCUS       DATDNM010000168         3667 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2052219, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000168 DATDNM010000000
VERSION     DATDNM010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2052219"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..285
                     /locus_tag="VI413_02860"
     CDS             <1..285
                     /locus_tag="VI413_02860"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6913591.1"
                     /translation="VQESLSNVARHSKANRVIISLRQIYEELVLEIIDNGIGFDENHK
                     TKHDSYGLIGMKERAFLLESKLSIMSELHKGTHLKVEMPYKIKNEEKIKL"
     gene            295..924
                     /locus_tag="VI413_02865"
     CDS             295..924
                     /locus_tag="VI413_02865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6913592.1"
                     /translation="MIRVFIVDDHEIIRHGLKAILVNEPDMMVVGEEENGTELLRQLS
                     DIDCDVMLLDLNIPGRNGTELIEELKKKKPQMHILVISVNPENKSAFPALNAGASGYL
                     SKDAALSEMIAAVRKIYSRGRYMSVTLAEQLAFDLLETDTLSKRKLSGLESNITLMLA
                     KGNTVKSIAGELGLSVSTVFSYRRRIFEKLKIKNNVELAHYVVENEVTV"
     gene            1397..2029
                     /locus_tag="VI413_02870"
     CDS             1397..2029
                     /locus_tag="VI413_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6913593.1"
                     /translation="MIKVFIVDDHEIIREGLKKILKEESDLVVVGEAQNGDEVLQNIK
                     DIDCDIMLLDMNMPGRSGLELLGDIKSLKPQMHILVLSIHPEDKFALRTLKSGASGYL
                     CKDTALEELVIAIRKVHTKGRYLSTTLAEQLAFDFMPEKDQLPHEQLSNREQEIMVML
                     ASGKKVKDIAADLQLSISTVFTYRVRIFEKLKIKSNVELTHYALNNKLVD"
     gene            2286..>3667
                     /locus_tag="VI413_02875"
     CDS             2286..>3667
                     /locus_tag="VI413_02875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913594.1"
                     /translation="MSKNSKKTASLTQVLVVGMMLLLIGVGSVNGQRYAVANGNWNAA
                     IWASTANGLAGSATVPTSSDDVFINDNRSVTVNLAASCNSLTISDGTNAASVVISGTN
                     TLTVTNAIIIGNGTGNGDNKFINVGTGALSCGSISMDNSGGNNWDCYVSISTGTVSVS
                     GNITMNGTNARNQIVFAGAGFLNVGGAISGGTISNASGGYTTLNRGTVNYNGANQTVG
                     SYNYFNLTLSGSGTKTMQAGTTAIAGSLVLTGTASATLVANLAVAGNTNIGTGTTLDL
                     STFNANRTTAGGTLAVAGTLMLGGTSGGQTGSNFPANYSTITLTGGIVNYDNADGGQI
                     IYAVPAYTTLTLGNTSGTQTAGGNLTATTLNNNTNAADILNMATYTLNATTVNNSGTI
                     RTQNISGAPIPAGRTWGGTISYDATTGNQTVVAGTYTTLTLGNTSGTQTAGGNLTATT
                     LNNNANATSIL"
BASE COUNT         1233 a          581 c          786 g         1067 t
ORIGIN      
        1 gtccaggagt cattatcaaa tgtagcccgt cattctaagg caaatagggt gataatatca
       61 cttcgtcaaa tatatgaaga gttagtgttg gaaatcattg ataatgggat tggtttcgat
      121 gaaaaccaca aaacaaaaca cgactcttat ggcctgattg gaatgaagga aagagcattt
      181 ttactggaga gtaaactcag tataatgagc gaattacaca aaggaacaca tttgaaagtg
      241 gaaatgccgt ataaaattaa aaatgaagaa aagataaaat tgtaaattag aattatgatt
      301 agagtattta ttgtagatga tcatgaaata attcgtcatg gattaaaagc tattttggta
      361 aatgagcctg atatgatggt tgtgggcgaa gaagaaaatg gaaccgagct tctgcggcag
      421 ctttccgaca ttgactgtga tgttatgttg cttgacttaa atataccggg acgaaatgga
      481 accgaactaa tagaagagct taaaaagaaa aaacctcaaa tgcatatatt ggttataagt
      541 gtaaacccag aaaataaatc agctttccca gctctaaatg ctggggcatc gggttattta
      601 agcaaagatg ctgcattgag cgagatgatt gctgctgtac ggaaaattta ttccagaggc
      661 aggtatatga gtgttacatt agcggagcaa cttgcatttg atttattgga aacggacact
      721 ctatcaaaaa gaaaattgtc cggattggaa tcaaatataa ctttaatgct ggcaaaaggc
      781 aatacggtta aaagcattgc cggtgaactg ggattaagtg taagcacagt ctttagttat
      841 cggcgaagaa tatttgaaaa attgaaaata aaaaataatg tcgaattggc ccattatgtt
      901 gtcgagaatg aagtaaccgt atagcctggt ttgtagtaaa aaataaaggt taaaacaatt
      961 tgactgaatt aattacgaca catttttttg ttccagggtc ttgtcagaac tttttttaaa
     1021 taaatgttca atttattggt gatttcataa aagtatttgt gcaatttgaa ctaactttgt
     1081 gttttgaaat tattccaatt cctttagaat aattgtggta aaaaatctat atctgcctaa
     1141 tataatgcta aataattgaa aaaaaatatt atatttgcaa gtgaaagtta tttggcagaa
     1201 attaattcta agtgtgtctt ttggaaaata gcgttcgaca agtaatgaac gatttcaatt
     1261 aatgacatat tgaactattt taaatgattg ttgttaattg attaagactt ctgctgttaa
     1321 taatctaatt tgctctttag ccaattatgc aagggaaata actatttttt ttgaaaaaat
     1381 ataaaaagaa aaagatatga taaaagtatt tattgtagac gatcatgaaa taattcgtga
     1441 agggttaaaa aaaattctta aagaagaatc tgacctggta gttgtgggag aagctcagaa
     1501 tggagatgaa gtactacaga atattaaaga tatcgactgc gatatcatgc ttttagacat
     1561 gaatatgccc ggtaggagtg gacttgaact gttgggagat ataaagtcac ttaaacccca
     1621 aatgcatata ttggtgttga gtattcatcc agaagataag tttgcattgc gcaccttgaa
     1681 atctggggca tccggttacc tgtgtaaaga tactgccctt gaagagttgg ttattgctat
     1741 ccgcaaggtg catacaaaag gaagatatct tagcactacg ttggcagaac agttggcatt
     1801 tgattttatg cctgaaaagg atcagttgcc tcacgagcaa ttgtcaaacc gcgaacagga
     1861 aattatggtc atgcttgcct ccgggaaaaa ggtgaaagat attgcagccg acttgcagct
     1921 aagcataagc actgtattta catatagagt tcgaattttc gaaaaattaa aaattaaaag
     1981 taatgtagaa ttaacacatt acgcattaaa taataaatta gttgattaat tctcttgtta
     2041 ttttctgttc ggatcttttg tattgttaca tttttgtaaa aattataaag atgttgcttg
     2101 acattccggt tttgtgcgat aaagtgctgt caactcaaaa attagtagta cttttgcacg
     2161 tttttccgac agtaataaaa accccaaaaa tcccacttaa ctaaatggtg aaatgttata
     2221 ttgaatatat aataaaaagc cttacaatta aatcattagt cagttctttg gctaatggtt
     2281 ttttagtgtc taaaaattca aaaaaaactg cttcacttac ccaagttctt gttgttggga
     2341 tgatgctttt gctcattggg gtgggaagtg tgaatggaca gcgatacgcg gttgcaaatg
     2401 gaaactggaa tgcggctatt tgggcttcaa ctgcaaatgg tctggctggt tccgctacgg
     2461 tgccaacttc aagcgacgat gttttcatta atgataacag aagtgtaact gtaaatttag
     2521 cagcgagttg taatagtttg acaataagtg atgggacgaa cgcagcttca gtcgtaataa
     2581 gcggaacgaa taccttgact gtcaccaacg ccattataat tggtaacgga acaggaaacg
     2641 gggacaataa atttattaat gttggaactg gagcactttc ttgcggatca atttcaatgg
     2701 ataattccgg tggtaataat tgggattgct atgtcagtat ttctaccgga actgttagtg
     2761 taagtggcaa tataaccatg aatggaacta acgccagaaa ccagattgta tttgccggtg
     2821 caggatttct gaatgtaggg ggggcgattt caggaggtac aatctccaat gcttctggag
     2881 gctatacgac cctcaaccgt ggaaccgtga actataatgg agcaaaccag acggttggaa
     2941 gttacaatta tttcaatctg actctttccg gttctggaac caaaaccatg caggcaggaa
     3001 ctacagctat tgcaggaagc cttgtattga caggaactgc ttcagctacg ttggttgcaa
     3061 atctggcagt agctggaaat actaatatcg gaaccggaac caccttagat ttgtcaactt
     3121 ttaacgcaaa ccgaactacg gcaggtggaa cgcttgctgt ggcaggaact ttaatgctgg
     3181 gtggaacatc tggcgggcag acgggaagta acttcccagc taattattcg acaataactt
     3241 taacaggtgg aattgtaaat tatgacaatg cagatggtgg gcaaattatt tatgctgttc
     3301 cggcttatac aacattgacc ttgggtaaca ccagcggtac ccaaacagct ggtggaaatt
     3361 tgactgcaac taccctgaat aacaatacaa acgctgccga tatcctgaat atggctactt
     3421 acaccctgaa tgctactacg gttaataatt cgggaacaat aaggacgcaa aatatttcgg
     3481 gtgctccaat tccggctgga agaacctggg gaggaacaat aagttacgat gcaaccaccg
     3541 ggaaccaaac tgttgttgcc gggacgtata ccaccctgac attgggtaat accagcggaa
     3601 cacaaactgc ggggggaaat ctaacagcaa caaccctgaa taacaatgca aatgctacca
     3661 gtattct
//
LOCUS       DATDNM010000169         3242 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1731643, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000169 DATDNM010000000
VERSION     DATDNM010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3242
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1731643"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..831
                     /locus_tag="VI413_02880"
     CDS             <1..831
                     /locus_tag="VI413_02880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913595.1"
                     /translation="EGESSLSEGFENRLTPKPGWIIGASNTTDSNVNSGTAPAILFEN
                     NNEYIETETYVVPVVKLSFFIRSVGAYNGGFLVQGLNAQNKWEKLDSILVTQTLNIKT
                     KSYSIDESKGYKRFKFTFKKSSNLNSYSVSFDDITVGFNKNLSYVLRENWTEDSSQVI
                     SDLIPNTEYLYKVRASEKNPYYENISEFSNLISAKTLGNVITFGNKDKSLLAYKTNDG
                     TIIVKVPARSDVVYVYNTIGQEVIAPVTPTSDVVEIKNLARSHVYIIKVGGNAVKIVL
                     "
     gene            945..2579
                     /locus_tag="VI413_02885"
     CDS             945..2579
                     /locus_tag="VI413_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002559479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEY6913596.1"
                     /translation="MLSVDALTVEFGGQTLFSDISFVINEKDRIALMGKNGAGKSTLL
                     KILAGTREPSKGSVSYPKETVVAYLPQHLLMEDNRTVFEETAMAFSAINDMEKKIQEL
                     NEELTTRTDYESDSYMELIEQVSALSEQFYSIEEINYDADIEKTLIGLGFSREDFTRQ
                     TSEFSGGWRMRIELAKILLRRPDVILLDEPTNHLDIESIQWLEDFLINSAKAVVVISH
                     DRAFVDNITTRTIEVTMGRIYDYKAKYSHYLELRKERREQQQKQFDEQQKMIAENMEF
                     IERFKGTYSKTLQVQSRVKMLEKLPILEVDEEDTSALRLKFPPSPRSGNYPVTAEAVG
                     KVYGEKRIFANANFMIERGEKIAFVGKNGEGKSTLVKAIMKEIEHEGKLTLGHNVKIG
                     YFAQNQASLLDENSTVFQTIDDVAVGEIRNNIKNLLGAFMFGGDNSFKKVKVLSGGER
                     QRLAMIKLLLEPVNLLILDEPTNHLDMKTKDILKQALVDFDGTLIVVSHDRDFLDGLA
                     TKVYEFGNQKVTEHLEDIYGFLAKKKMESLREIEKK"
     gene            2739..>3242
                     /locus_tag="VI413_02890"
     CDS             2739..>3242
                     /locus_tag="VI413_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005858440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HEY6913597.1"
                     /translation="MKTEILDKLKTLAESAKYDVSCASSGTTRKNTPGGIGSTAGWGI
                     CHSFTEDGRCVSLLKIMLTNYCIYDCAYCINRRSNDLKRATFAVDELVELTIEFYRRN
                     YIEGLFLSSGVINNPDYTMERMVRVIKQLRTVHKFNGYIHMKSIPGASQQLVHEAGLY
                     ADRLSVNI"
BASE COUNT         1039 a          697 c          700 g          806 t
ORIGIN      
        1 gaaggcgaat cttcgctatc ggaaggattt gagaacaggt tgacgcctaa gccgggctgg
       61 ataatcggtg cttcaaatac aacagattct aacgttaaca gcggaacggc tccggccatc
      121 ctgtttgaaa acaacaacga atatattgaa actgaaacct atgtggtgcc tgttgtgaaa
      181 ctgtcctttt ttatccggtc ggtaggagct tacaacggcg gctttcttgt tcagggactg
      241 aatgcccaaa acaaatggga aaagctggac agcattctgg ttactcaaac gttgaatatc
      301 aaaactaaaa gttactctat tgacgaatca aaaggataca aacggtttaa attcacgttt
      361 aagaaaagtt ctaatttaaa ttcatactcg gtttcatttg atgacattac ggttggtttc
      421 aataaaaacc tgagttatgt attgcgcgag aactggacag aagacagttc acaggtaatt
      481 tctgacctca taccaaatac cgaatactta tataaagtca gggcgagtga aaaaaaccct
      541 tattatgaaa acatatccga attctcaaat ctgatttctg caaaaaccct tgggaatgtt
      601 ataacttttg gaaataaaga taaatcactg cttgcttata aaaccaatga tgggacaatc
      661 attgttaaag taccggcaag gagcgatgta gtttatgtct ataacaccat tggacaagag
      721 gtcattgctc ctgtcacccc cacttcggat gtagttgaaa taaagaatct ggcacgcagc
      781 catgtatata tcatcaaagt cggaggaaat gccgttaaaa tagtattata atataaaact
      841 tccaaaaaga ctttccgccg ggactcgcat gacaccggcg gaaagttttt tttatgtact
      901 tttgcactcc caattgtaaa tcaaataatt cgtaactaaa attcatgtta tcagtagatg
      961 cgcttaccgt cgaatttggc ggacaaacac ttttctcgga catatcattt gtgattaatg
     1021 aaaaagaccg tatagccctg atgggtaaaa acggcgccgg aaaatcaaca cttctcaaaa
     1081 ttctggccgg aacacgtgaa ccgtccaaag gctcggtttc ttacccgaaa gaaactgtgg
     1141 tagcatacct gccacaacat ttattaatgg aagacaaccg caccgttttt gaagaaacag
     1201 ctatggcttt ttcggcaata aacgatatgg agaaaaaaat ccaggagctg aacgaagaac
     1261 tgacaacacg tactgactat gaatcggaca gctacatgga actcattgaa caggtgtcgg
     1321 cactcagcga gcaattctac agcattgaag agataaacta cgatgccgat attgaaaaga
     1381 cattgattgg attgggcttt tcgcgcgagg attttacgcg ccagacatcc gaattcagtg
     1441 gaggctggcg tatgcgtatt gagctggcaa agattctgct tcgccgtccg gatgtaatcc
     1501 tgttggatga gcctaccaac cacctcgata ttgaatctat ccaatggctg gaagactttt
     1561 tgattaactc agccaaagca gtagtagtta tctcgcacga ccgtgctttt gtcgataata
     1621 tcaccacccg caccattgaa gttaccatgg gacgtattta cgactacaaa gccaaatact
     1681 cgcattacct ggaactgcgc aaggaacgcc gcgagcaaca acagaaacaa ttcgacgagc
     1741 aacagaaaat gattgccgaa aatatggagt ttatcgaacg tttcaaagga acgtattcga
     1801 aaacactgca agtgcaatcg cgggtaaaaa tgctcgaaaa actgcccata ctggaagtag
     1861 acgaagaaga cacatcagct ttgcgcctta aattcccacc atcaccacgt tccggaaatt
     1921 atcctgtaac tgccgaagcg gttggaaaag tatatggcga aaaacgtatt tttgccaatg
     1981 ccaactttat gattgaacgg ggcgaaaaaa ttgctttcgt tggtaaaaac ggtgaaggga
     2041 aatcgacact ggtgaaagcc attatgaaag aaattgaaca tgaaggcaaa ctgacgcttg
     2101 gtcacaatgt gaagattggt tactttgcac aaaaccaggc gtcgttattg gatgaaaatt
     2161 caaccgtatt ccagaccatc gacgatgtag ctgtgggcga aatacgtaac aacataaaaa
     2221 acctgcttgg tgcctttatg tttggcggcg acaattcgtt caagaaagtg aaagtactct
     2281 caggtggtga gcgccagcga ctggctatga tcaaactcct gctggaaccg gttaacctct
     2341 tgatactcga tgagcctacc aaccacctgg acatgaaaac caaagacatt ctgaaacaag
     2401 cattggtcga cttcgacgga acactgatag tggtatcgca cgaccgtgat ttcctggacg
     2461 gattggcaac taaagtatac gaattcggaa accagaaagt aaccgagcac cttgaagata
     2521 tctacggatt cctggctaaa aagaaaatgg aaagcctcag ggaaattgaa aaaaaataga
     2581 caattctttg tcacccatat caatggcctt attaccgacg gagcaaccaa aagttgctcc
     2641 gtcggtcgtt tatacaccct tcataattta tcaacaacac ccaaatatta agagtgctcg
     2701 ttccacattt tacattctaa ttacgttact ttgtagtaat gaaaacagaa atcctcgaca
     2761 aactcaaaac actggctgaa tcggcaaagt acgatgtttc gtgcgcctcc agcggcacta
     2821 cccggaaaaa tacgccgggt ggaattggca gtacagccgg ttgggggatt tgccacagct
     2881 ttaccgaaga tggccggtgc gtgtcgctgc tcaaaatcat gctcaccaat tattgcattt
     2941 acgattgtgc ctattgcatc aaccgccgga gcaacgacct gaaacgtgcc acttttgctg
     3001 ttgacgaact ggtggagctg accattgaat tttaccgccg caattatatc gaaggattgt
     3061 ttctgagctc gggcgttatc aataatcccg actacaccat ggaacgcatg gtaagggtga
     3121 taaaacaact ccgaacggtt cataagttca acggatacat tcacatgaaa agcattcccg
     3181 gagcaagcca gcaactggtg cacgaagccg gactgtatgc cgaccgtttg agtgtaaaca
     3241 tt
//
LOCUS       DATDNM010000170         4582 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_450279, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000170 DATDNM010000000
VERSION     DATDNM010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4582
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450279"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /locus_tag="VI413_02895"
     CDS             <1..595
                     /locus_tag="VI413_02895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913598.1"
                     /translation="RNDVQGICDSLTYSARDSILNMHGGPVLWAEDNQLSGEFIQAFT
                     KNEKVNKIHIQRVAVAIQHQDSVYYNQLSGKEIIAYVDSNQLKKVDVNGNAETIYYPV
                     DDKDSTLIGLNKTKSSFVVMYLKNKKVERVVMTSATTGTMYPLAQLSGGELYLKNFFW
                     LEDQRPKSKKDLFQVFPKVARPKPGDDNAAAATPPKP"
     gene            828..3248
                     /locus_tag="VI413_02900"
     CDS             828..3248
                     /locus_tag="VI413_02900"
                     /inference="COORDINATES: protein motif:HMM:NF019314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6913599.1"
                     /translation="MKESIVIGLIRNIALLMTFSILYDHFWTSRIKPKSVIFKLIAGV
                     FLGCVAIILILTPWNYADGIIFDTRSVMLSISGLFFGPIPTITAMIIASVYRVFIGGS
                     GTYMGIAVIFTSGTIGVLWNYIRPNWRIRNNSVELTTMGLFVHLIMLGCVLLLPAELR
                     LQTFQEIFFPVMVLYPFATMLLGKYIIRQNNARLIKKELHASEKRWQFALEGAGDGIW
                     DWNLDTNKVYFSKQWKNMLGFEEYEIENNLEEWKDRIHPEDVEKVNSLIQEHINGLSE
                     IYTSEHRLLCKNGTYKWILDSGKIMQHDVNGKPLRFIGTHKDISDRKEKELLLAYERF
                     LLDSLMNFTPESIYFKDMHSRFIRVNQVEAFNLGCDNVADVIGKTDFDFYEKDFATKT
                     FNIEQEIIRTGNSYQNEELGYFKGGRANWGITNKMPLRNSEGKIIGTFGLTINITERK
                     LAEQALQESERYTNSILQAIPDLIFVLDSHSVFLDFKTARIEDLVLPKENFINKSVFE
                     VLPPGVASVLKEKIDLVLASQSGESVEYQLEIAGKLNEYECFIQPFVENKVIALVRNI
                     TDRKQVEADLKNSQEQLKNFAAHLQKVREEERVSLAREIHDELGQILIALKIDLGIFK
                     QNVFKAVKKSAIDDITIRFEQMYSLVDKTIKTTRKIMTGLRPDVLELVGFQEAARMFT
                     AEFTERYHIQCSFTSPTPEVKLDSQRSIALFRILQEALTNIAKHANATAVDVVVSIID
                     DKFIMKIADNGVGLDEKKQIRQDSYGLIGMKERVYLLEGKLTVAGKPGVGTTIFVEMP
                     YNASQFSN"
     gene            3366..4442
                     /locus_tag="VI413_02905"
     CDS             3366..4442
                     /locus_tag="VI413_02905"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6913600.1"
                     /translation="MNTIAWIGFCQGLFAAILMFTKKNSSLPDRILSGWLILLSTDFL
                     SCALNYEIFNRPLLISSFLLFNPALYLYISSLTRPKFRLRWIQLLHLVPFVFFGTYTY
                     AIKEPFLLDVFFVKDDYYLFRLIFGSANIISWAVYNPLSLILVHRHRIHLQNELSNID
                     SNENLGWVLAVAIFYVVYCIFAVLISVTSLVAGFNPLTPHIYNYSTLLVFIYIISFYG
                     LRQRAVSRRLLLAEQPVPYKNSNLSADTKRAIKQKVMDYFETEKAYLNPALSMSVLSA
                     ALKIPKYQITEVLNTEIGNNFFQFVNHYRVEAVKEMLSDPRNKYSIEAIGYDCGFSSK
                     SSFYTVFKEITGETPVSFRSKIFQ"
BASE COUNT         1371 a          779 c          988 g         1444 t
ORIGIN      
        1 ccggaatgac gtgcagggaa tttgcgattc gctgacttat tctgcacgtg attcgattct
       61 caatatgcat ggggggccgg tactttgggc agaggataac cagctttcgg gtgagtttat
      121 acaggctttt acaaaaaatg aaaaggtaaa taaaatccat attcaacgtg ttgccgtggc
      181 tatccaacat caggattctg tgtactacaa tcaactttcg ggcaaggaaa taattgctta
      241 tgtagacagc aatcaactca aaaaggtaga tgttaacgga aatgctgaga ctatttatta
      301 tccggtcgat gacaaggatt ccacccttat tggcctgaat aaaaccaaaa gtagttttgt
      361 ggtcatgtat ctgaaaaaca aaaaagtgga acgggttgtc atgacttcgg caacaacggg
      421 aacgatgtat ccgttggcac aactttcagg aggcgagtta tacctgaaaa acttcttctg
      481 gttggaagat caacgtccca aaagcaaaaa ggacttattt caggttttcc caaaagtggc
      541 aagacccaag ccgggtgatg ataatgccgc tgcagctaca ccgccaaagc cataaaaaag
      601 aatattgagg ctaattgtag ctcgatttta ttgcgaacat ataccttcaa aagagaaagg
      661 acttattcag aaataatttg aataagtcct ttctcttttt ctaaagtctt gattttaata
      721 taaaagttta attgaaacca tagaaactag gctatttgga caattaatga aaattaattg
      781 tttactttag tgcttaaaat aacctcaagt taaatacctt ttttttgatg aaagaatcga
      841 tagtaattgg ccttatccgt aacatagcct tactcatgac attcagtatt ctgtatgacc
      901 atttctggac aagcagaatt aaaccaaaaa gtgttatttt caagctgatc gcgggagttt
      961 tcctcggctg tgtagccatt attcttattc ttaccccatg gaattatgca gatggtatta
     1021 tctttgatac caggtcggta atgctttcta tttcagggct gtttttcggt cctattccta
     1081 caattactgc catgattata gcttctgtgt acagggtgtt tataggtgga tcaggtacat
     1141 atatggggat agctgttatt tttacttccg gaactattgg tgtactttgg aattatatca
     1201 ggcccaactg gagaattaga aataattcgg tggaactgac taccatgggg ctttttgtac
     1261 atctcataat gcttggatgt gttctgttac ttcctgcgga attaagactt cagacattcc
     1321 aggagatttt ctttcctgtt atggttttat atccatttgc aaccatgttg cttggaaaat
     1381 atattatccg gcaaaataat gcccgtttga ttaaaaaaga acttcatgcc agtgaaaaac
     1441 gttggcaatt cgcattggaa ggagcaggag atggtatttg ggattggaac ctggatacga
     1501 ataaggtgta cttctccaaa caatggaaga atatgcttgg gtttgaagaa tatgaaattg
     1561 agaacaatct ggaggaatgg aaagaccgta ttcatcccga agatgtggaa aaagtaaaca
     1621 gcctgattca ggagcatatt aatggcctgt cagaaatata cacttccgag caccgcttgt
     1681 tgtgtaagaa tggcacctat aaatggattc ttgacagcgg aaaaataatg cagcacgatg
     1741 tcaatgggaa accattgcgc tttattggta cccacaaaga tatttcggat agaaaggaga
     1801 aagaactgct gctggcttac gagcggtttt tgctggattc gttaatgaac tttactcccg
     1861 aaagcattta ttttaaagac atgcacagtc ggtttatccg ggtgaatcag gtagaggctt
     1921 ttaatttagg ttgcgataat gtggctgacg ttattggaaa aaccgatttt gatttttatg
     1981 aaaaggattt cgcaacaaaa accttcaata tagagcagga aattatccga acggggaatt
     2041 cataccaaaa tgaagaatta gggtatttca aaggtgggcg tgcaaactgg ggaatcacca
     2101 ataaaatgcc attgcgcaac tcggaaggga aaattatagg aacattcggg ttgacaataa
     2161 atattactga acgaaaactg gccgagcagg cactacagga aagcgaacgt tatacgaatt
     2221 ctatattgca ggcaattcct gatttgattt ttgtgttaga ctcgcatagc gtatttctcg
     2281 attttaaaac ggccaggata gaagatcttg ttttaccaaa agagaatttc ataaataaaa
     2341 gtgtttttga agtgttaccg ccaggggttg cttctgtgtt gaaggaaaaa attgatttgg
     2401 ttttggcttc acagtctgga gagtctgttg aatatcagtt ggagattgct ggaaagttaa
     2461 acgaatacga gtgttttatc cagccatttg tagaaaataa ggttattgca ttggtgcgga
     2521 atataaccga tcgtaaacag gtggaggcgg accttaaaaa ttctcaggag caacttaaaa
     2581 actttgcagc acatctacaa aaggtgcgtg aagaagaacg tgtttctttg gcccgcgaaa
     2641 ttcatgatga actgggccag attttaattg ccttgaaaat tgatttgggt atttttaagc
     2701 agaatgtatt taaagcggtg aagaagtctg caattgatga cattacaatc cgatttgaac
     2761 aaatgtacag cctggtagat aaaacgataa aaactacccg taaaattatg accggattac
     2821 ggccggatgt gctcgaactg gttggattcc aggaggcagc tcgcatgttt acagcggaat
     2881 ttacggagag ataccatatc caatgcagtt tcacaagtcc tacgcctgag gttaaattgg
     2941 attcgcagcg ctcaatcgca ttgttccgga tactccagga ggcactaact aatattgcca
     3001 aacatgcaaa tgcaacagca gttgatgtag tggtaagtat tattgatgat aaatttatca
     3061 tgaaaattgc agataatggg gttggtctcg atgaaaaaaa gcaaatccgg caggattcct
     3121 acggacttat tgggatgaaa gagcgggttt atttgttgga aggtaaattg acagttgctg
     3181 gaaaaccagg agtgggaacg acaatatttg ttgaaatgcc ctataatgcc tcgcaatttt
     3241 ctaattgaga tttgaataat taggttcgct tttagtgcat ttcccagaat gtaacttata
     3301 tttgcattat aattctcagg ctattattgt tttttgattg gattaataat tgacaacctg
     3361 cagctatgaa tactattgcc tggattggat tttgtcaggg gctattcgcg gctattctta
     3421 tgtttaccaa gaaaaacagc tcgcttcccg ataggatttt gtcgggctgg cttattctct
     3481 tatctaccga tttcctgtca tgtgcactga attacgaaat cttcaaccgc ccgcttctta
     3541 tcagctcatt cctgttgttt aatcccgcgt tgtatttgta tatcagttct ttgacccgcc
     3601 ctaaattcag attgagatgg atccaacttc tccatttagt tccatttgta ttttttggaa
     3661 catataccta tgctataaaa gaaccattct tgcttgatgt gttttttgtg aaagatgact
     3721 attatctctt tcgattgatt tttgggtcgg ctaatatcat ttcatgggct gtttataatc
     3781 ccctgagtct tattttagtt cacagacacc gtatacattt gcaaaatgag ttgtctaata
     3841 tcgatagcaa tgaaaatctg ggctgggtgt tggcagtggc tatattttat gtggtttatt
     3901 gcatatttgc cgtgttgatt tcggttactt cccttgttgc aggctttaat ccgcttacac
     3961 cgcatatcta caattattcc acactgttgg tttttattta tatcataagt ttttatggat
     4021 tgaggcaaag agctgtttca agacggttgt tacttgcaga acaaccggta ccttacaaaa
     4081 attcaaattt gtctgcggat acaaaacgag ctatcaaaca aaaggttatg gattacttcg
     4141 aaacagagaa ggcatacctt aatccggctt tgagtatgag tgttctttct gcagcattga
     4201 aaattccgaa atatcagata acggaagtat tgaatactga gattggcaat aatttttttc
     4261 aatttgtcaa tcattatcgt gttgaagccg ttaaggaaat gctgtctgac cccaggaata
     4321 aatattccat agaagccatt ggctacgact gcggtttttc aagtaaatct tctttttata
     4381 ccgtttttaa agaaataact ggtgaaacgc ccgtttcgtt ccggagtaaa attttccaat
     4441 aatcactttt ttatgttgtc tgctgtgagt ttgactttcg aaagtcgaac cggaagttgt
     4501 tgtcctgatt ttgaaattcg gacagttttt tagtggaaac tgactataat tgttgaagat
     4561 agggattgcg ggcttgtgtg tc
//
LOCUS       DATDNM010000171         2293 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_23030, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000171 DATDNM010000000
VERSION     DATDNM010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23030"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2293)
                     /locus_tag="VI413_02910"
     CDS             complement(<1..>2293)
                     /locus_tag="VI413_02910"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HEY6913601.1"
                     /translation="DGEQLYVQANAPLAKMGMMESNEAIIPAGTLLPAMERTIYKTGN
                     LVFVMKKFLTHAKKSLTQFTPDTNKMGVMIQPKNAIIFNVSDGIASKKINVLTAENEV
                     SNPGTCLLNDIKVSIIYGNLPQKLPFSITLRDFQLDRYPGSNSPSSYASEITLTDKEA
                     KTVTPFRIYMNNILNYRGYRFFQSSYDNDEQGTVLSVNHDYWGTLITYVGYLFMLIGM
                     VLTLFNKNSRFHTVIKLSNNLQQKRKAAKTLLLIGLLATSASMFASVDKNIGRDAHFK
                     ALSSLLIQDEAQGRVEPISTYASDLIRKISKKTSYKNQSSLEVLMGMCTNPEHWQNEP
                     IIKVAHDGLAKELGAEKDYLSFIQLFDTKNGGQYKLADKVDAVYQKDPSMRNQYEKEL
                     INLDERVNIVNSIFSGSILTIFPVAGHDTEKWIAAANFTPQPASEQTMGNTAGGAVCP
                     MTGKTGTTDKPASGESAMGEAMMSGSADKCPVTGKTGKAGKLNKSIQEMAVDSGAKCP
                     MGGDTMTASATNSMMSAMGAAMPTAETTGPEKLLTAYFSALVQGNETGNWSEANSTLL
                     SLKNYQQLNGGSQLPSKSRVKMEVIYNNLSIFLTLAILYGLIGIILISMHVFNILKFN
                     PKIEKYLNKSIYPLAVMFLVYTAGLALRWYISGHAPWSNGYEAMIFVGWGTTLSGLVF
                     ASRNPITLAITSLLAAIALSVAGMSWMNPEITNLVPVLKSYWLVVHVAVITSSYGFLP
                     TGAMLAFFNMCLMIARKQKNASK"
BASE COUNT          575 a          493 c          524 g          701 t
ORIGIN      
        1 atttttgatg cattcttttg tttgcgggct atcatcaaac acatattgaa aaatgccagc
       61 atagcgcctg ttggcagaaa accatagctt gatgtaatga cggccacgtg aactaccagc
      121 caatacgatt tcagcacggg aaccaaatta gttatttccg gattcatcca actcattcct
      181 gccaccgaaa gagctatagc agccagaagt gaagtgatcg ccaatgttat agggttgcgg
      241 cttgcaaata ccaatcctga aagggtagtt ccccagccca cgaagatcat ggcttcatag
      301 ccgttactcc acggagcatg accggaaata taccaacgca atgccagtcc ggcggtgtaa
      361 accagaaaca taacagccag cggataaatg cttttattta ggtatttctc tattttagga
      421 ttgaatttca gaatgttgaa tacatgcatg gagataagga taatcccaat caagccatac
      481 aaaatagcca gagttagaaa aatgctcaga ttgttataga tcacttccat ttttacccgg
      541 cttttggacg gaagctggct gccaccattc aactgttgat agtttttcag gctaagtaaa
      601 gtgctgtttg cttcgctcca gttgccggtt tcatttccct gtaccagggc tgaaaaataa
      661 gcagtaagta acttttcggg tccggtagtt tctgctgttg gcatagctgc acccattgca
      721 ctcatcatgc tgttggtagc agaagcggtc attgtatcgc cacccatagg gcatttagct
      781 cctgaatcaa cagccatttc ctgtatcgat ttattcagtt ttccggcttt gcctgttttt
      841 cctgtaaccg gacatttgtc ggcagaacca ctcatcatgg cttcacccat tgcagattca
      901 ccggaagccg gtttgtcagt agtacccgtt ttcccggtca ttgggcaaac ggcaccacct
      961 gccgtgttac ccatagtttg ttcagaggca ggttgaggag tgaagtttgc cgcggctatc
     1021 catttttcgg tatcatggcc ggctaccggg aaaatagtca gaatgctgcc tgagaaaatg
     1081 ctgtttacta tattgacgcg ttcgtccaga ttgatcagtt ccttttcgta ctgattacgc
     1141 atcgacggat ctttctgata aactgcatct accttgtcgg ccagtttgta ttgacctccg
     1201 tttttggtgt cgaaaagttg aataaacgat agatagtctt tttcagcccc gagttctttg
     1261 gccaatccgt catgggctac tttgataatc ggttcgtttt gccagtgttc ggggttggta
     1321 cacatgccca tcaaaacctc cagcgacgat tggtttttat aactcgtttt cttggatatt
     1381 ttgcgaataa gatcggaagc atacgtactg attggctcca cacggccttg tgcttcgtcc
     1441 tgtatcaaca ggctgctcag cgctttgaaa tgagcatctc tgcctatgtt tttatcaaca
     1501 gaggcaaaca tggaggcaga agtagcaagc aatccaatca acagaagtgt ttttgcggct
     1561 ttgcgttttt gttgcaggtt attgctgagc tttatcacgg tgtggaaacg gctgttttta
     1621 ttgaacaatg taagaaccat accaatcagc ataaaaagat atcccacata ggttataagt
     1681 gtgccccagt aatcgtggtt tactgagagt actgttccct gttcatcgtt gtcatacgaa
     1741 gactggaaga aacggtaacc gcgataattg agaatattat tcatgtaaat acggaatgga
     1801 gttaccgttt tagcttcttt gtcggttagt gttatttcgc tggcgtagga ggatgggctg
     1861 tttgagcccg gatagcggtc cagctggaaa tcacgaagcg tgatgctgaa aggaagcttt
     1921 tgcggtaaat taccatatat aatgcttact tttatgtcgt tgagcagaca ggtgccggga
     1981 ttggaaactt cgttttcagc cgtcaataca tttatttttt ttgatgcgat gccatcgctt
     2041 acattaaaga taatggcgtt tttaggttgt atcatcacgc ccattttgtt cgtgtcgggc
     2101 gtaaattggg tgaggctctt tttagcgtga gtaaggaatt tcttcattac aaaaaccagg
     2161 ttcccggttt tgtaaattgt acgttccatg gcaggcaaaa gtgttccggc cggaattatt
     2221 gcttcgttgc tttccatcat tcccatttta gctaagggtg cgttagcttg tacataaagc
     2281 tgttcgccgt cca
//
LOCUS       DATDNM010000172         3443 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1412042, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000172 DATDNM010000000
VERSION     DATDNM010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3443
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1412042"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..512
                     /locus_tag="VI413_02915"
     CDS             99..512
                     /locus_tag="VI413_02915"
                     /inference="COORDINATES: protein motif:HMM:TIGR00738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEY6913602.1"
                     /translation="MKLSKTSEYALRILIFMAKEPDQLYTAKQLVEELNVSDKYLRRL
                     MTDLSKSGFIRSVQGREGGYTFVKRINEINLFDVIDSVEGMDKLNGCVLGFEKCSCTN
                     PCAMHDTWQHVRAQLNKVFRETKLSDMDFDKILRY"
     gene            578..1171
                     /locus_tag="VI413_02920"
     CDS             578..1171
                     /locus_tag="VI413_02920"
                     /inference="COORDINATES: protein motif:HMM:NF016843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPP family protein"
                     /protein_id="HEY6913603.1"
                     /translation="MRKRIKRGFRISRHIIYKETLIDYKEHFWSFTGAFFGIGLIAFF
                     QSHFLTKYENIFLIGSFGASSVLIYGAIQSPLAQPRNLIGGHMVSAIVGVTIYKILPD
                     VIWLTASLAVALSIVLMQVTKTLHPPGGATALIAVIGSQRVKALGYGYVFSPVLTGCL
                     ILFAMALIFNNITSHRSYPTSNRFVKSVKKVLINKNQ"
     gene            1221..1586
                     /locus_tag="VI413_02925"
     CDS             1221..1586
                     /locus_tag="VI413_02925"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY6913604.1"
                     /translation="MQTINYKDADKVNNPHGVDARKLHGNEHVQAVHIHLKAGESLKK
                     HAAAVDVFFYVLEGEGVVEIRDEKMTVSKDTLIESPKNVPHCLYNESNADFRVLVVKT
                     PSPTIEQNKQAIQNIMNSK"
     gene            1596..1775
                     /locus_tag="VI413_02930"
     CDS             1596..1775
                     /locus_tag="VI413_02930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009136341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY6913605.1"
                     /translation="MEEDVEICNCLGIMKSEIVKAIKDKGLKTVEEVQDETNAGTVCG
                     SCIPDIEDILKEINN"
     gene            1788..2339
                     /locus_tag="VI413_02935"
     CDS             1788..2339
                     /locus_tag="VI413_02935"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY6913606.1"
                     /translation="MQAIEILVNEHDSILRMIKITQTILENEDTDQVNIEDVEQIIDF
                     IKNFADKYHHLKEEDVLFMEMENYGMSRENGPIGVMLHEHDEGRNFIKQAVEGIEKYK
                     LGNDSSFDQIKYGLLNYCILLTNHIGKENSILYPMAERLLPDAVKEAMAENFEETNST
                     TVDNEYFDKYLKMVDELSDIYLN"
     gene            2350..3045
                     /gene="ric"
                     /locus_tag="VI413_02940"
     CDS             2350..3045
                     /gene="ric"
                     /locus_tag="VI413_02940"
                     /inference="COORDINATES: protein motif:HMM:TIGR03652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair di-iron protein"
                     /protein_id="HEY6913607.1"
                     /translation="MENYKDLKVGEIVTRDFRAAEIFKNVGIDFCCGGNQSLEEACKE
                     KKIDSSLLETELAKLQNTTVNAMHNFNEWGLDFLCDYIVNTHHKTVLNLLPQLTFYTQ
                     KIADVHGDNHPELIEIASLFSQINNELLQHLDKEEEVLFPAIKSVLKTDAAESKETVI
                     SEITRMTGEHEFAGGAMDRINVLSDNYSVPADGCSTYQVTYKLLEQFEDDLHIHVHLE
                     NNILYPKALKLAI"
     gene            3150..>3443
                     /locus_tag="VI413_02945"
     CDS             3150..>3443
                     /locus_tag="VI413_02945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913608.1"
                     /translation="MKETLIDKFMSRKGLTAGFWIIALFMVSMLIYYTANLQKEVPPI
                     PKTVTSVSGEKLYTYEDVVQGKGYFQEFDLQDWGSLLGMGAYIGPDFTTEMLHY"
BASE COUNT         1157 a          547 c          746 g          993 t
ORIGIN      
        1 tagtaaaaag ttttttgttg ttaaatgttg ctttttgttt tgggaataag aaaaattgtt
       61 atttctttgc attaaataat acacgaaggt agtatataat gaaattgtct aaaacgtccg
      121 aatacgcatt gcgaatattg attttcatgg cgaaagagcc tgatcaatta tacacagcca
      181 aacaattggt ggaagagctg aatgtgtctg acaagtattt acgccgatta atgaccgatt
      241 tgtcgaaatc cggatttata cgaagtgtgc agggtaggga aggcggatat acgtttgtaa
      301 aaagaatcaa cgaaatcaat ttatttgatg tgattgattc ggttgaaggt atggataaac
      361 ttaatggttg tgtgttggga tttgaaaaat gctcttgtac gaacccttgt gccatgcacg
      421 atacctggca acacgttagg gcgcaattga acaaggtgtt tcgcgaaaca aagctgtcgg
      481 acatggattt tgacaagata ttacgctact aattttttta tctttaaatg ctactacgag
      541 gtagtattta tacatcgttt tttagtgcag atcattgatg agaaaaagaa taaagcgggg
      601 attcagaatt tccagacata taatttataa ggaaacatta attgattata aggagcattt
      661 ctggtcattt accggggcgt ttttcggaat cggacttatt gctttttttc aaagtcattt
      721 tctgacaaag tacgagaata tattcctgat tggttcattc ggagcctcca gcgttttaat
      781 ttatggggca atacaaagtc cgttggctca gccccgcaac ctgattggag ggcacatggt
      841 ttcagccatt gttggggtta caatttataa gattttaccc gatgtcatct ggttgaccgc
      901 ctcacttgca gtggcgcttt ctattgtgtt gatgcaggta acaaaaacat tacatccgcc
      961 cggaggagca acagcgctga tagctgtaat tggctcgcaa cgggtaaaag ctttgggcta
     1021 tggttacgtt ttttcacccg tattgacagg atgtctgatt ctgtttgcaa tggcgttgat
     1081 tttcaataat atcacttcgc acagaagcta tccgacaagc aaccggtttg taaaatcagt
     1141 gaaaaaagta cttatcaaca aaaatcaatg aacacttatg tgtgtattaa caaaaaaata
     1201 acaattaatt taaaaataaa atgcaaacta taaattataa agatgccgat aaggttaata
     1261 atccccacgg tgtggatgcc aggaaacttc atggaaatga gcacgttcag gcagtacata
     1321 ttcatttgaa agccggcgaa agcctgaaaa aacatgctgc agcagttgat gtgtttttct
     1381 atgtactcga aggtgaaggt gttgtggaaa ttagagatga aaaaatgacc gtgagtaaag
     1441 atacactgat tgaaagtccg aagaatgttc ctcattgcct ttataatgag agcaatgcag
     1501 acttccgggt gttggtggta aaaactccgt cgcctacaat tgagcagaac aagcaagcca
     1561 ttcaaaatat aatgaattca aaataaagca aggctatgga agaagatgtt gagatttgca
     1621 attgcctcgg tatcatgaaa agtgagattg taaaggccat aaaagacaaa gggctgaaaa
     1681 ccgtggaaga ggtgcaggac gaaacaaatg caggcaccgt ttgcggttcg tgtatacctg
     1741 atattgaaga tattctgaaa gaaataaata attaaaattt aaattgtatg caagcaatag
     1801 agattcttgt taatgaacac gacagcatcc tgagaatgat caaaattaca cagactattc
     1861 tggaaaatga ggatacagac caagtgaata tagaagatgt ggagcaaatt atcgatttta
     1921 ttaaaaattt tgccgacaaa taccaccatc tgaaagagga agatgtactt tttatggaaa
     1981 tggaaaacta tggcatgtcc agggaaaacg gaccaattgg cgtgatgttg catgaacacg
     2041 acgaaggtag aaatttcatt aagcaggccg tagaaggaat tgaaaaatat aaacttggaa
     2101 atgattcgtc gtttgaccaa ataaaatatg gattgctaaa ttactgcatt ttgctcacca
     2161 atcatattgg caaagaaaac agtattttat accctatggc cgagcggctt ctacctgatg
     2221 ctgtaaaaga agcaatggca gagaactttg aagaaacaaa ttcgacaacg gttgataatg
     2281 agtattttga taaatacctg aaaatggttg acgaattaag cgatatatat ttgaactaac
     2341 aacaaaaaaa tggaaaatta taaagattta aaagtgggtg aaattgtgac ccgtgatttc
     2401 agggcagctg agatatttaa aaatgtgggt attgactttt gttgcggtgg aaaccagagt
     2461 ttggaagagg cctgtaaaga aaagaaaata gacagctcgt tgctcgaaac agagttagct
     2521 aaactccaga ataccacagt taatgcaatg cataatttca acgaatgggg cctggatttt
     2581 ttatgtgact atattgtaaa cacgcatcac aaaacggtgc tgaacctgtt gccacaactg
     2641 actttttata cacagaaaat agcagatgtt catggtgaca atcatcccga actgattgaa
     2701 atagcctcgt tgttttctca aatcaataac gaactattgc agcatcttga taaggaagaa
     2761 gaagtgctgt ttcctgcaat caaatctgtg ttgaaaactg atgctgcgga atcaaaagaa
     2821 acggtaatct ccgaaataac ccgaatgacg ggagagcatg aatttgccgg tggggccatg
     2881 gacagaataa atgtgctcag cgataactat agtgtacctg ccgatggttg cagtacctat
     2941 caggtgactt ataaactgct tgaacagttt gaagatgatc tccacattca tgtgcatttg
     3001 gaaaacaata tattgtatcc gaaagcttta aagctggcaa tctgatttat atatattatt
     3061 cagacttgtt cttttcctga aaaagggcaa gatcttaagt atttatttta aatttttgta
     3121 attaaaatta attattaaac aacaaatcaa tgaaagaaac attaattgac aaattcatga
     3181 gtcgcaaagg gttgactgcc ggcttttgga ttattgcgct ttttatggtg tccatgctca
     3241 tttactacac tgcaaatttg cagaaagagg tgccgccgat tccaaaaaca gttacatcgg
     3301 ttagcggcga aaagctttac acatacgaag atgtagttca gggcaaaggt tattttcagg
     3361 aattcgactt gcaggactgg ggtagtttgt taggtatggg tgcttatatc ggccccgatt
     3421 ttacaaccga aatgttgcat tac
//
LOCUS       DATDNM010000173         2580 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1518148, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000173 DATDNM010000000
VERSION     DATDNM010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1518148"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..417
                     /gene="atpC"
                     /locus_tag="VI413_02950"
     CDS             166..417
                     /gene="atpC"
                     /locus_tag="VI413_02950"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit epsilon"
                     /protein_id="HEY6913609.1"
                     /translation="MKLEIITPEQIYFSGEVTSVTLPGTSGLFTVWENHAPLISSLSK
                     GKISFVTIVDNRKSETEIVVDGGFAEVSNNIVTVCVESV"
     gene            421..816
                     /locus_tag="VI413_02955"
     CDS             421..816
                     /locus_tag="VI413_02955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913610.1"
                     /translation="MKKLSQQLMSLFALVMLVLGWTGWGILKKMYPEEIFNWYPYIPC
                     VFFLVGILMIIILAKNYKKEAKKLVNIYMILKLVKLVMAMVYLLAFYFIVRVDIRIFG
                     IVFAAYYGIYIGLETGIFYLIEKQIKKEA"
     gene            817..1911
                     /gene="atpB"
                     /locus_tag="VI413_02960"
     CDS             817..1911
                     /gene="atpB"
                     /locus_tag="VI413_02960"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEY6913611.1"
                     /translation="MKRLHKILLFVLLAVFIPVISAYANEPEQKPGEQKEEKELDVRE
                     FILEHISDSYVWHITKIGEDEIGIPLPVILYSNTTGWHVFMSSVFHESPVYEGFQIAH
                     EGKYKGKIVEMSNAGEEVRPFDISITKNVFALLFSSILMIVCIMYVARSYKKNPLQSR
                     SGFAGFMEMFIMNINDDVIKPCIGKGYEKYAPYLLTVFFFVFTNNILGLIPIFPGGAN
                     VTGNIAITMVLAVITFLIVNISGSKEYWKEIFWPDVPLWLKVPPMLPLIELVGIFTKP
                     FALMIRLFANILAGHSIVLGLTCLVFVTVKLGVGMNTSMTAVSIFFSVFIGFVELLVA
                     YIQAYIFTMLSAVFIGLARVEPHHSHKEHK"
     gene            1954..2202
                     /gene="atpE"
                     /locus_tag="VI413_02965"
     CDS             1954..2202
                     /gene="atpE"
                     /locus_tag="VI413_02965"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012573392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit C"
                     /protein_id="HEY6913612.1"
                     /translation="MLISILLQAAAGAGLAKLGAGLGAGLAAIGAGMGIGRIGGSAME
                     GIARQPEAGGDIRMAMIIAAALVDAVALFAIVVCGFIL"
     gene            2311..>2580
                     /locus_tag="VI413_02970"
     CDS             2311..>2580
                     /locus_tag="VI413_02970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit B"
                     /protein_id="HEY6913613.1"
                     /translation="MALLLPESGLLFWMLLSFGIVVLILAKYGFPVIIKMVESRKTYI
                     DESLLIAKQTYEQMAVVKAQGETIVDNARREQVKIMNEAAQTRDML"
BASE COUNT          737 a          393 c          571 g          879 t
ORIGIN      
        1 attcgcggat ttaaaatgat tttggacggc gaattggatt atcttccgga aatggcattc
       61 ttgagtgttg gaacaattga tgatgcaatt gccaaaggcc agaaattaat tgaacaatcg
      121 aagaaataga cccctaatcc catgaaggga acttaaagca gtaaaatgaa attagaaata
      181 atcactcccg aacaaattta tttttcaggt gaagtaactt cggttacctt gcccgggaca
      241 agtggacttt ttacggtgtg ggaaaatcat gcaccgctta tttcttcttt gtcgaaaggg
      301 aaaatcagtt tcgttactat tgtagataat cgtaaatccg aaacggaaat tgttgttgat
      361 ggcgggtttg ccgaagttag caataatatt gttacggttt gtgttgaatc agtttaagca
      421 atgaagaaac tatcccaaca attaatgagt ttatttgctc tggttatgct tgttttaggc
      481 tggactggtt ggggaatcct caaaaaaatg tatccggaag aaatattcaa ctggtatccg
      541 tatatacctt gtgttttctt tcttgtgggt attttaatga tcattattct tgctaaaaat
      601 tacaagaaag aggctaagaa gcttgtaaat atctacatga ttcttaagct cgtcaaactt
      661 gtaatggcaa tggtttatct tttggcattt tattttattg taagggttga tattcggatt
      721 ttcggaattg tgtttgctgc atattatggt atttatattg gactggaaac cggcattttt
      781 tatttaattg agaaacaaat caaaaaagaa gcgtaaatga aacgtttaca taagatatta
      841 ctttttgtgc tcttagccgt tttcataccg gttataagtg cttatgcaaa tgagccggaa
      901 cagaagccgg gagagcaaaa agaagaaaag gaattggatg tgcgtgagtt tatccttgaa
      961 cacatttcgg attcttacgt ttggcatatt acaaaaatag gagaagatga aatcgggatt
     1021 ccgcttcctg tgatacttta tagcaatact acaggttggc acgtgtttat gtcttcagtt
     1081 tttcatgaaa gtccggttta tgaaggattc cagattgccc acgagggaaa gtacaaaggg
     1141 aaaattgtgg aaatgagcaa tgccggtgaa gaagttcgtc ctttcgatat ttcaatcact
     1201 aaaaatgttt ttgctctttt gttcagtagt attttgatga ttgtctgcat tatgtatgtg
     1261 gcgcgttctt acaaaaaaaa tccgttgcaa tcaagatccg gttttgccgg ttttatggaa
     1321 atgtttatca tgaacatcaa tgacgatgtg attaagcctt gtattggtaa aggttatgag
     1381 aaatatgccc cttacttgct aacagttttc ttttttgtat tcaccaataa tatcctcgga
     1441 ttaattccta tttttcctgg gggggcaaat gtaacgggaa atattgccat tacaatggtt
     1501 ttggcggtaa tcacattctt aatagtaaat atatcgggct ctaaagaata ctggaaggaa
     1561 attttctggc cggacgtacc gctttggttg aaagttccac ctatgttgcc acttattgaa
     1621 cttgttggta tttttaccaa gccttttgcg ttgatgattc gactttttgc gaacattctg
     1681 gctggtcact ctattgtatt ggggcttact tgtttggtat ttgtgacagt aaaattaggt
     1741 gttggaatga ataccagtat gacagcagtg tcgatttttt ttagtgtatt tattggattt
     1801 gtagaattgc tggtggctta tatccaggct tacattttta ccatgttgtc ggctgtattt
     1861 attgggttgg cacgcgtaga accacatcat tcacacaaag aacacaaata atagtttcag
     1921 aaaaaatata gtaaccaaat aaacaaaaat gttatgttaa tttcaatttt attacaagct
     1981 gccgctggtg caggtttagc taaattaggt gctggtttgg gagcaggtct tgctgcaatt
     2041 ggtgcaggta tgggtatcgg tcgtattggt ggctctgcca tggaaggtat tgcccgtcaa
     2101 ccagaagcag gtggtgatat tcgtatggcc atgattattg ctgctgcact tgttgatgct
     2161 gtagctttgt ttgctatcgt agtttgcgga tttattcttt aatagagttt caaatctgaa
     2221 gtcaaagtct gagaaagtct ttgccaatct tttgctgaca tactctgttg gttgaaattg
     2281 taaattataa aattgtaaat caattgaatt atggctttat tgttgcctga atccggatta
     2341 ctcttctgga tgttactttc gtttggaata gttgtactta ttcttgcgaa atatggtttt
     2401 cctgtcatta tcaaaatggt ggagagccgt aaaacgtaca tcgatgagtc gttgcttatt
     2461 gctaaacaga cttacgaaca aatggctgtt gtgaaagcgc agggtgaaac tattgttgac
     2521 aatgcgcgtc gtgaacaggt aaaaataatg aacgaggcgg ctcaaacccg ggacatgttg
//
LOCUS       DATDNM010000174         2228 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1732089, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000174 DATDNM010000000
VERSION     DATDNM010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2228
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1732089"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..555)
                     /locus_tag="VI413_02975"
     CDS             complement(<1..555)
                     /locus_tag="VI413_02975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913614.1"
                     /translation="MNNSLQFPLNFTFRIGTLSNDFVAKDANDITVAYVRQKMLKLIE
                     EVQVFSDESRSELNYTIKANKWLDFSASYAFTNKNGQDIGRIARKGWASLWKANYDIF
                     DESQMKVLFVREENPWAKVFDSLLGEVPIVNLLTGFFFHPMYAIARPDETKIARLRKV
                     TSFFGRRFVIEKLAEFEKGEEERIL"
     gene            complement(592..1437)
                     /locus_tag="VI413_02980"
     CDS             complement(592..1437)
                     /locus_tag="VI413_02980"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY6913615.1"
                     /translation="MAANKKTQPVRLHIATYNVRLQTSVDSAERSWDNRKTDVAKMIK
                     KYDFDIFGVQEIGNKSQEADLKMLIPEYSYFGKGRDNEAGTDGEQIGIFYKTKRFVSK
                     EKGSFFLSETPDTISKGWDAALRRMCVWTKLQDRFSKTEFYVFCTHFDHMGVQARVES
                     AKLIVERVKKIAGDKPVFLLGDLNTSPEATEMYKILVAALEDSREISKLHPNGSIGTF
                     NGFDVTKSLLPIAERIDYIFCQKIKVFIYRVLNDKFSENAYPSDHFPVLIDCMIDFAD
                     KKQHK"
     gene            complement(1674..>2228)
                     /locus_tag="VI413_02985"
     CDS             complement(1674..>2228)
                     /locus_tag="VI413_02985"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913616.1"
                     /translation="YVVIAEDLSAFQAVCPEVSNVVGSTGFGLSGSGEYVRIYDNLGM
                     LVDSVNYSNVAPWPLNAGGTGATLELKNPSFDNTDGNNWYADQTKTGSPGAMNSFMLN
                     VDDAKILFYAVYPNPAHDELFVRTTAENTRVDIITLQGAVLRTIQIREPGVQHVDISN
                     LQKGMYLIRLTNAGSEHIEKVIVN"
BASE COUNT          664 a          491 c          390 g          683 t
ORIGIN      
        1 aaggattcgt tcttcttctc ccttttcaaa ttcagctaat ttttcaatta caaaccgacg
       61 gccaaaaaat gaggtgactt ttctcaaacg ggcaatttta gtttcatcgg ggcgggcaat
      121 tgcgtacatt ggatgaaaga aaaagccagt gagaagattc acaatcggaa cttcaccaag
      181 cagtgaatca aatactttgg cccacggatt ttcttcgcgc acaaacaaga ctttcatttg
      241 cgattcatca aaaatatcgt agttagcttt ccataaagaa gcccagccct tgcgcgcaat
      301 ccgtccgata tcttgcccat ttttatttgt aaatgcgtac gacgctgaaa aatccaacca
      361 tttatttgct ttaatggtat agttgagttc cgaacggctt tcgtcactga atacctgtac
      421 ttcctcaatt aatttcaaca ttttctggcg tacataagcc accgtaatat cgtttgcatc
      481 tttcgctaca aaatcattac ttaaagtgcc tattctgaac gtaaaattta gaggaaattg
      541 aagtgaattg ttcatatatt attggagttt tgaattaaaa actttagttt gttatttatg
      601 ctgttttttg tcggcaaaat ctatcataca atctatcaac accgggaaat ggtccgacgg
      661 ataggcattc tccgagaatt tatcatttaa taccctgtaa atgaacactt ttattttttg
      721 acaaaaaata taatctatcc tttctgcaat tggcagaagc gattttgtca catcaaatcc
      781 gttgaatgtc ccgatagagc cgttcgggtg gagtttggaa atttcgcggg aatcctcaag
      841 agcagcaacc agtattttat acatttcggt tgcttcgggc gacgtattca aatcgccaag
      901 gagaaacacc ggtttatcac ccgcaatctt ctttacccgc tccactatca gtttggcact
      961 ttcaacacgt gcttgtacac ccatgtggtc gaaatgcgtg caaaaaacat aaaattcagt
     1021 tttgctgaac cgatcctgaa gtttagtcca aacgcacatc cttcgcaatg ctgcatccca
     1081 gcctttgcta atggtgtcgg gagtttcgga cagaaagaat gagccctttt ccttcgacac
     1141 aaatcgcttg gttttgtaga aaattccaat ctgttctccg tcagttccgg cctcattgtc
     1201 acggcctttt ccaaaataac tatattccgg aatcaacatt ttcaaatcag cttcctgact
     1261 tttatttcca atttcctgaa ctccaaaaat atcaaaatcg tattttttaa tcattttggc
     1321 tacatcagtt ttccgattat cccacgagcg ttcagctgaa tcaaccgacg tttgtaacct
     1381 gacattgtat gtggcaatgt gcagccgcac aggttgtgtt tttttgtttg cggccataaa
     1441 caggtgaata caagcaaata aacaaataaa gattgtataa gtacgtttaa tcattcgata
     1501 tagttttgtt aatgcctcaa aagtaaaaat aaatttcgga atacttattt acaaaccgta
     1561 aaaatctttg tttaatccta aagattaaaa caggaaacat aaaaaaaatg gttttgagct
     1621 tcaacataaa ggtgagactc aaaaccattc aataaggata ttcctttacg gagctaattt
     1681 acaatcactt tttcaatgtg ctcagatccg gcattcgtca atctgatcag gtacatgcct
     1741 ttttgcaaat tactgatatc aacatgttgt acacccggtt cacgtatctg aatagttctc
     1801 agcacagcgc cctgcagcgt aataatatca acccgtgtgt tttcggcagt tgttctcaca
     1861 aacaactcat cgtgtgccgg gtttggataa acagcataga ataaaatttt tgcatcatca
     1921 acattcagca tgaatgaatt catcgccccc ggcgaaccgg ttttggtttg atcggcatac
     1981 cagttatttc catctgtatt atcgaacgat ggatttttca attcgagggt ggcacctgtt
     2041 ccgccagcat ttagtggcca tggagctaca ttactataat ttacggaatc aaccaacata
     2101 cccagattat cgtaaatgcg aacatattct cccgaacccg acagaccaaa accggtgctt
     2161 ccaactacat tcgacacctc gggacacacc gcctggaaag ccgacagatc ttctgcaata
     2221 acaacata
//
LOCUS       DATDNM010000175         6059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1624982, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000175 DATDNM010000000
VERSION     DATDNM010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6059
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1624982"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2219)
                     /locus_tag="VI413_02990"
     CDS             complement(<1..2219)
                     /locus_tag="VI413_02990"
                     /inference="COORDINATES: protein motif:HMM:NF017263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HEY6913617.1"
                     /translation="MKTTRLLSILICLHFCVAGALTAQTFEHPGIFNRESDFARMRQK
                     IAEKAEPWYTTWLNLLASPEAQIGWAGPRAVATVIRGGTGDNISLMYRDVAAAYQNAL
                     IYKISGDKAHGDKAVAILNAWASINTAVSGNSDRYLAAGLDGYQFANAAEMMRGYPGF
                     DIEKFKNYMLNVFFYPMNERFIVGNAWGSPHNDACATNYRVNWDICNMNAMMAISILC
                     DNKTGFDEAINYCKSGDGTGNITRAINFLYPNNPTTGANIWGQWEESGRDQGHAVGGL
                     SLYGLFCEIAWNQGVDIYSYDNCRYRKGAEYVARYNIGDSVGGVWKYNDLPYTTYSRL
                     MGSTCTWYTETALGGATRGKLGASWELIYNHYARRLNQGDKVKSVYEILQQQQGWSKS
                     WPTLNIHADTYDTPGGGALTFCTDSGSYILPWLNMDISARSITKLPYYGKTTLKDSTL
                     TVIGSGSGIKGISDQFQYAYQKLVDDGSIETQIASLDEVNALCQAGIMIRENLEQNSA
                     NVFLSLSAAQAVLLTSRDSTGLTATNIASNASLNTFPYWLRLSRSGNTFIASVSPDRV
                     NWTEVGSKTIKMNRLVYAGLAVSSKNGNVVCTAVFNKTKMKQGNMRPVLKVTSPVLGT
                     TPYVTPANVKIAGTAYDMDGLLDKAEVYVNGNLVYTAKVSPFTYNLTGQPEGSNSVYV
                     KAYDRQGATTTSDTVKYTVNPLTTRLPWYKFDETKTGYFAYDSSGNSMTAYVYGSAVP
                     "
     gene            complement(2431..2802)
                     /locus_tag="VI413_02995"
     CDS             complement(2431..2802)
                     /locus_tag="VI413_02995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913618.1"
                     /translation="MKYTYDIYPAQRILSVKLQGGLYTDEVTLMDKEIRLKANGLNYK
                     IVYDFRKTTNHISVADAYYWFVAEYNKMLFDLKYIPVAKITNEQDRDFFDFFGLTATN
                     KGCIMKICKDETSAFQWLEQF"
     gene            complement(2937..4409)
                     /locus_tag="VI413_03000"
     CDS             complement(2937..4409)
                     /locus_tag="VI413_03000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913619.1"
                     /translation="MKNEFIQRQRGILVALLSFLCVITIKSQTWNAPNPQGTAFTAGT
                     GYYVYNVGGKSFLDRGGDWSTMAALGSGSLITPVQSTTLWTLQYDSSTKTLFPGGTTD
                     GSVYTDNVTSNTWDVQLTDAVNNVYSIQVNNTYGGYNASQYLGASSTVYNSNRGLAYD
                     VRYNRAASEYTQWKFCTADAYAKYNAQVQLDKYMKIAQLVGSSVDLTSYITIYNTGTP
                     AEINTAAANLNVALAPTDKTTSITNPNFDTNITGWTASANYGYNFTEVEYYQRNFDFN
                     QTITGLPAGVYVVKVQGYERPVNLNTADHTGYTNGWDALNSRFYATASGVKTFQPMKN
                     LFAETTCTVGGTIDGLIFPNTMSDAQTAFTAGLYDNELGYVTVDATGSLTIGISNTYD
                     NNRAGRWNIFDNFRLYYYGAIADLTTNIEESNVRKNEFVCYSEKGKLYVSSLNCFTIY
                     NLQGLKIAESHDKGGVSEFSLLPGVYMVKTSNGVQKVIVK"
     gene            complement(4505..>6059)
                     /locus_tag="VI413_03005"
     CDS             complement(4505..>6059)
                     /locus_tag="VI413_03005"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="immunoglobulin-like domain-containing protein"
                     /protein_id="HEY6913620.1"
                     /translation="GGWHHMAFTQNGTIGTVYIDGTQVAQNAAMSNIPAVALPIAGRT
                     GTLYNWLGRSCYPGDVYLKNTLLYDFQLFSVPLTDSDLMTYISVGDSITKLDAAYLEN
                     PDIILPELTAEQAALELGDLPAVVSNITLPSRGALDNTVSISWKSSDPAIIASNGSVT
                     RPAYFDKTIELTATLSKSGQKLTKTFTATVLVDPATKFTTDLLVKYDFSTVSADSVVT
                     DAAEKHFTGIAKKNASIESIGSTTKFNVLNLGDSIGYFDMGLEVGKVLYNLSDYTMSC
                     YYRVNEAYANMAANGNFLWSFSNSTNVNTDRNGYIIGSLKDQSFSITPGYYTAATGNQ
                     SVGFATPALQGAWHNLTYTQSGEIGTLYVDGMPVATGAITNLPKTSLPKAGLSGTLYN
                     WLGRSCYASDAYLRKTLVYDFRLYKTALTEEQIQTSVLNVGTTIGLLENAYAESLNGV
                     KTISDSPYKVVPTSEGIKISGLTGTEKVSVFDIAGRQLKVVNVNRITTNAGVYFVKVD
                     NYVAKVIVK"
BASE COUNT         1759 a         1329 c         1122 g         1849 t
ORIGIN      
        1 ggaacggcac ttccatacac ataagcagtc atgctgttac cacttgaatc gtaggcaaaa
       61 taaccggttt tggtttcgtc aaatttatac cagggcaacc tggtcgtcaa tggatttacg
      121 gtatatttca ccgtatccga agtggttgta gcaccttgcc tgtcatacgc ttttacataa
      181 acagaattgc ttccttcagg ctgtccggtc agattatacg taaagggaga tactttagcc
      241 gtataaacca aatttccatt tacataaact tcagctttat ccaataaccc atccatatca
      301 taagctgttc cggcaatttt tacatttgca ggtgttacat agggagtagt tcccaacacg
      361 ggagaagtta ctttgagaac gggccgcata tttccctgtt tcatctttgt tttattaaag
      421 acggcagtac aaaccacatt tccatttttg ctcgaaacag ccaaccctgc ataaaccagc
      481 cggttcatct taatcgtttt actacctacc tctgtccagt ttacacggtc aggcgaaacg
      541 gaagctataa atgtatttcc agaccgggaa aggcgtaacc agtatgggaa agtatttagt
      601 gaggcattcg aagctatatt ggtagccgtt aggccggtgc tgtcgcgtga agtaagtaac
      661 acagcctgtg cggctgacaa actcagaaaa acgtttgctg aattttgttc cagattctcg
      721 cgtatcataa ttccggcctg gcaaagcgca ttcacttcgt ccagacttgc tatttgtgtt
      781 tcaatagagc catcgtccac caatttctga taagcatact ggaactggtc tgaaattcct
      841 ttaattcctg aacctgaacc aataacggta agcgtactgt ctttcaatgt cgttttacca
      901 taatatggca attttgtaat agagcgggca ctgatgtcca tgtttaacca cggaagaata
      961 taactgcccg agtcggtgca aaaagtaaga gctccacctc cgggagtatc ataggtatct
     1021 gcgtggatat tcagggtagg ccagcttttg gaccatcctt gttgctgctg caatatttca
     1081 tacacacttt ttaccttgtc gccctgattc aaccggcggg catagtgatt gtaaattaat
     1141 tcccaactag caccaagttt tccgcgcgtg gccccaccaa gtgccgtttc ggtataccac
     1201 gtacaggttg aacccatcaa ccgtgaatag gttgtatatg gcaaatcgtt gtatttccat
     1261 acaccgccca ccgaatcgcc aatgttgtag cgggctacat attccgcccc tttgcggtac
     1321 cggcagttat catagctgta tatatcaacg ccctgattcc aggctatttc gcaaaacaat
     1381 ccatacaagc ttaatccgcc aaccgcatgt ccctggtcac gtccgctttc ttcccattgg
     1441 ccccagatat ttgcacctgt tgttggatta ttcggatata gaaaattaat tgcgcgggtt
     1501 atattaccgg ttccgtcacc agacttacaa tagtttatcg cttcatcaaa accggtttta
     1561 ttatcacaaa gaatggaaat agccatcata gcattcatat tacaaatatc ccagtttaca
     1621 cggtaattcg tagcacaggc atcattgtgc ggcgatcccc aggcattacc aacaatgaag
     1681 cgttcattca tcggatagaa aaacacatta agcatatagt tcttaaactt ttcgatatca
     1741 aaacccggat aacctcgcat catttcggca gcgttggcaa actggtagcc atcaagtccg
     1801 gctgctaaat aacggtctga atttccggat acagcagtat ttatagaagc ccaggcgttt
     1861 aaaatggcaa ctgccttgtc tccatgcgct ttatcaccac tgattttata aatcaatgca
     1921 ttctggtaag cagcagctac atccctgtac attaagctga tattatctcc ggttccacct
     1981 ctgataacag tggcaacagc gcgtggtccg gcccatccaa tctgtgcttc gggactggca
     2041 agcaggttaa gccatgttgt gtaccagggt tcggcttttt cggcaatctt ttggcgcatg
     2101 cgtgcaaagt cagactccct gttgaagatg ccgggatgtt caaatgtctg agcggttaat
     2161 gcacctgcaa cacaaaagtg gaggcagatt aagatggaga gaagtcttgt tgttttcatt
     2221 gttgatattt ttcttgaaat aagattatta ttcaattttt aaaattaaat atggtgcaaa
     2281 ttaagccgaa attcagctat gagcaggaga ttatctggtc atttaagcac catcttataa
     2341 aatggtgctt agttttgaga gtaacgagaa taaccactca tcatattttg ctataaatca
     2401 aagattaaac tggttatata tttattctgt ttaaaattgt tcgagccatt ggaatgctga
     2461 agtttcatcc ttacatattt tcattataca gcctttattg gttgctgtaa gtccaaaaaa
     2521 atcgaagaaa tctctgtcct gctcatttgt gattttggca acaggtatat atttcagatc
     2581 aaaaagcatt ttgttgtatt ccgctacaaa ccaatagtat gcatctgcca cacttatatg
     2641 attggttgtt tttctaaaat cataaacaat tttatagttc aacccatttg ctttcagccg
     2701 gatttcctta tccattagag tgacttcatc cgtgtacaac ccaccctgca atttaacact
     2761 caatattctt tgagccggat agatatcata ggtatatttc atctttttac aaactaaatt
     2821 atgaaacaat aaattacgtt gaaatatctt ttgacaataa gaattcgaat aattagccgg
     2881 ggcgttgatt gctcaactcc ccaactaatg tcattgtaaa ctaaacaatc aaaaaattac
     2941 tttacaatta ccttttgaac tccgttgctt gtttttacca tataaacgcc aggtaagagt
     3001 gaaaactcag acacgcctcc tttatcgtga ctttctgcaa ttttcagtcc ctgcaaatta
     3061 taaattgtaa aacagtttaa agaacttaca taaagcttac ccttttcaga ataacaaaca
     3121 aactcattct ttctcacatt tgattcctca atattcgtag ttagatcagc tatagctcca
     3181 taataataca aacggaaatt atcaaatata ttccatcgtc cggctctatt attatcgtat
     3241 gtattactta taccaattgt aagcgatccg gtagcatcaa ctgttacata acccaattca
     3301 ttgtcataca aacctgctgt aaatgcagtt tgagcatctg acatagtatt cgggaaaatt
     3361 aagccgtcaa tggtgccacc tacagtacaa gttgtttctg caaaaagatt cttcatgggt
     3421 tgaaatgttt ttacacctga agcagttgca tagaatctgg aattaagtgc atcccagcca
     3481 ttggtatatc cggtatgatc agctgtattc aggtttactg ggcgctcata tccctgaact
     3541 ttaacaacat acactcctgc aggtaaccct gttatagttt gattaaaatc aaagtttctt
     3601 tgataatact ctacctcagt aaaattatag ccataatttg cagaagctgt ccagcctgta
     3661 atatttgtat caaaattagg gttagtgata gaagttgtct tatccgttgg agcaagtgca
     3721 acatttaaat ttgcagcagc agtattaatc tcagcgggag ttcctgtatt atatatagtt
     3781 atgtaggaag tcaaatcaac actacttcca acaagttgag ctatcttcat gtatttatcc
     3841 agttgaacct gcgcattgta ttttgcatag gcatctgcgg tacagaattt ccattgagta
     3901 tattcactgg cagccctgtt atagcgtacg tcataagcca aaccccggtt actgttataa
     3961 acagtagatg atgcacccag atattgactt gcattataac ctccgtatgt gttgttcacc
     4021 tgaatagaat aaacattgtt gactgcatct gtgagttgaa catcccatgt attacttgtt
     4081 acattatcag tataaaccga accatctgtt gtacctccgg gaaaaagagt cttggtgcta
     4141 ctatcgtatt gcaatgtcca caaagtggta ctttgaaccg gagtaattaa tgaacctgaa
     4201 cctaaagcgg ccatagtact ccaatcacca ccccgatcca aaaaagattt tccacctaca
     4261 ttatacacgt aataaccggt accggctgta aatgcagtac cttgaggatt tggagcattc
     4321 catgtttgcg attttatagt tatcacgcat aaaaagctta ataaggcaac taaaatgcct
     4381 ctttgtctct gtataaattc gtttttcatt aaaattagat ttaaaattag ttatttatct
     4441 gatttagcat caataatgga taagagcgaa ccccgaagcg ttctccctta tcctttttat
     4501 ccatttattt tacaattact ttggcaacat aattatctac ttttacaaag taaacacctg
     4561 cattggtagt aattctgttt acatttacca ctttcaactg acggccggca atatcaaata
     4621 ccgatacttt ttcagttccg gttaagccgg atattttaat tccttcagat gtaggaacca
     4681 ccttgtaagg tgaatcgctg atggttttaa cgccatttaa actttcagca tacgcatttt
     4741 ccaataatcc gatggtagtt ccaacgttta aaaccgatgt ctggatttgc tcctctgtca
     4801 aagctgtttt atacaatctg aaatcataca ccagggtttt gcgcaagtag gcatctgaag
     4861 catagcacga acggcctaac cagttatata gcgtacctga caaacctgct tttggaagcg
     4921 atgttttagg aagattagta atagcacctg ttgccaccgg cattccatca acgtacaatg
     4981 ttccgatttc tccactttgc gtgtaggtta agttgtgcca tgcaccctga agtgctggtg
     5041 ttgcaaatcc cactgactga tttccggtag ctgccgtata ataacccgga gtaatactga
     5101 aactctggtc cttcaaacta ccgataatat aaccgtttct atccgtgttt acattggtac
     5161 tgttagaaaa actccaaagg aaatttccgt tagccgccat attcgcataa gcctcattca
     5221 cacgatagta gcagctcatg gtataatccg aaagattata aagcactttt cctacctcaa
     5281 gtcccatatc aaaataacca atgctgtcgc ccaggttcaa cacattgaat tttgtggtag
     5341 aaccaatcga ctcgatagag gcatttttct ttgcaattcc ggtaaaatgt ttttcggctg
     5401 catcggttac aacagagtcg gcagatacgg tcgagaaatc atatttcacc aataagtcag
     5461 tagtaaactt cgttgccgga tcaaccaata ctgttgcagt aaaggtcttg gtcagtttct
     5521 gtccgctctt cgacaaagta gctgtcaatt cgattgtctt atcaaaataa gccggacgtg
     5581 taacagagcc attcgaagca atgatggccg ggtcggatga tttccatgaa attgaaacgg
     5641 tgttatccaa cgcacctctg gaaggaagcg taatattgct taccactgcc ggcaaatcgc
     5701 ccagctcaag cgcagcttgt tctgcggtta attccggaag aattatatcc ggattttcaa
     5761 gataggcagc atccagtttc gtaattgaat cgcccactga tatatatgtc atcaaatcag
     5821 aatcagtcaa cggcacgcta aacaattgga aatcgtacag caaggtattt ttcaaatata
     5881 catcccccgg gtagcacgag cgtcccaacc agttgtaaag cgtaccggta cgtcctgcaa
     5941 ttggcagagc tactgcaggg atattactca tagctgcgtt ttgagccact tgtgttccat
     6001 caatataaac cgtaccaatt gtaccgttct gagtgaatgc catatgatgc catccgcct
//
LOCUS       DATDNM010000176         2405 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1090658, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000176 DATDNM010000000
VERSION     DATDNM010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2405
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1090658"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="VI413_03010"
     CDS             complement(<1..338)
                     /locus_tag="VI413_03010"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6913621.1"
                     /translation="MATINPHINFNGNAEEAFNFYKSVFGGEFAIIMRFKDLASAEFP
                     VAENEANKIMHIALPIGKSILMANDVPEIMGRTNENENRSKIVISAESKEEADKLFNG
                     LSAGGQIEMP"
     gene            545..1867
                     /locus_tag="VI413_03015"
     CDS             545..1867
                     /locus_tag="VI413_03015"
                     /inference="COORDINATES: protein motif:HMM:NF033592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEY6913622.1"
                     /translation="MLSANLKIIEELKAFISIVSETPEILEIFSTQKGSFTRERKLPF
                     RRLVLLIAKLCKKTLGLEIDTFFEELNIEMRCSVSAFSQQRMKLDSFFYEVWNKLLCE
                     SCYHYYGSAIKRWKGYRIVAADGSNISLINTPVLEKYFGGQSNQSDTFVQGKAYYCYD
                     VLNELVLLADIKPYRFGELNMAYSTIDGLEEDMLMIYDRNFCNFKMVALHTWQEKEIK
                     FVIRAKETQNIIKTFIEGGSKSEIVHLKTTPAAIKGLSKCGYIISKHTTLKIRLVRVE
                     LPNSVEVLMTNLWEEEGHPSSEFKELYFKRWCVETNISVQKNILQLESFSGLTPLSIK
                     QDFHATVIISNLHSILIKEAQQTIENKQINRKYPMKVNRNKSYGKLKLKLVSLFVENE
                     PTIILQGLNDYFIRDPVPVRINRSFPRKIKNKQSKTKHRTYANYKPAY"
     gene            complement(2082..>2405)
                     /locus_tag="VI413_03020"
     CDS             complement(2082..>2405)
                     /locus_tag="VI413_03020"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEY6913623.1"
                     /translation="QSTETLVFTEAEMESKPNLEYVRIEFGPRILEDINKILWERGIQ
                     SLLVEGGKSLLESYMHEKLWDEARVYIGNARFGEGVKAPATAWILDREEALDDSLMRI
                     YYRKE"
BASE COUNT          771 a          443 c          442 g          749 t
ORIGIN      
        1 ataggcattt caatttgtcc gcctgccgaa agtccattga atagtttatc agcttcttcc
       61 ttgctttctg cgctgattac aattttactc ctgttctcat tttcgtttgt tcgccccatt
      121 atttcaggca catcattggc cattaaaata cttttaccga ttggtaaagc aatgtgcatt
      181 attttatttg cctcattttc tgcaaccgga aattcagcgc tggctaaatc tttgaaacgc
      241 attattattg cgaactctcc gccaaataca gatttataga agttgaatgc ctcttctgca
      301 ttgccgttga aattaatgtg tggattgata gttgccataa ttttaatttt taattgttat
      361 tagaaactgt ttaaatttta tttttttgtc ccgttaggga tagaatatcg gtagaatatg
      421 gattaagatc taaattctgt cccgtacggg caatgtcatt aagttaagga acaacagtac
      481 aaaaacagag gacaaaagat tttaattttg gagttgcaac aaaaaaatta aatctgaagt
      541 cctcatgtta tctgcaaatt taaaaattat tgaagagtta aaggcattta tttcaattgt
      601 atcggaaacc cctgaaatac ttgagatttt ttcgacccaa aagggttctt ttacccgaga
      661 gagaaagttg ccttttcgtc gtttagttct gttaatagcc aagctttgca aaaagactct
      721 tggtcttgaa atagatacgt tctttgaaga attgaacata gagatgcgct gtagtgtgag
      781 cgccttttcg caacaaagga tgaagcttga ttcattcttt tatgaagttt ggaataagtt
      841 gttgtgtgaa agttgctacc actattatgg gtcagctatc aaacgatgga aaggttatcg
      901 aatagtagcg gcagatggct caaacatcag tctgataaac actcctgttc tcgagaaata
      961 ctttggagga caaagtaatc aatcggacac ttttgtgcag ggaaaagcct attattgcta
     1021 cgatgtattg aatgaactgg tattacttgc agacattaaa ccataccgtt ttggagagtt
     1081 gaacatggct tattcaacca ttgacggact tgaagaagat atgctgatga tttatgatag
     1141 aaatttttgc aatttcaaaa tggttgcttt gcatacttgg caggagaagg aaattaaatt
     1201 tgtaataagg gcgaaggaaa cacaaaacat catcaaaact tttattgagg ggggatctaa
     1261 aagtgaaatt gtccatctca aaactactcc ggcagctatc aaaggtctaa gtaagtgtgg
     1321 gtatattatc agcaaacata caacattgaa gattaggctt gtaagagtag aattaccaaa
     1381 ttctgtcgag gtgttaatga ctaatttatg ggaagaagaa ggtcatccaa gctctgagtt
     1441 taaagagtta tattttaaac gttggtgtgt cgagactaat atttctgttc aaaaaaacat
     1501 tttacaactt gaatcgttta gtggtcttac gcccctttca ataaaacaag attttcatgc
     1561 tacagttatc atctcaaact tacactcaat attaataaag gaagctcagc aaacaattga
     1621 aaataagcag attaatagaa agtatccaat gaaggtgaat cgaaataagt catacgggaa
     1681 gttgaagctg aaactagtaa gtttattcgt tgaaaatgaa cccactataa tacttcaggg
     1741 attaaatgac tattttatta gagatccagt tccggtcaga attaatagat ctttcccccg
     1801 aaaaattaaa aacaaacaat caaaaactaa gcacagaaca tatgcaaatt acaaaccagc
     1861 atactaaaat ccttaactta atgacattgc ccgtacggga cggaatttag atcttaatct
     1921 atactctacc gaatattata tccctaacgg gacaaaaaac aaaatttaaa cagtttctaa
     1981 gaagcaagta tcccaccagc agattttagg gtcaaaaaac ggcttcaatg ccctcggtat
     2041 ggctggctac ggttctaaaa ctcaggtggc ctatgttttt ctcactcttt ccggtaataa
     2101 atccgcatca gactgtcatc caaagcctct tccctatcca ggatccaggc agttgcgggg
     2161 gctttgactc cttctccaaa tctggcattg ccaatgtaaa ctcttgcctc atcccacaac
     2221 ttttcatgca tgtaagattc gagtaaggat ttgcctcctt ctacaagtaa cgattgtatc
     2281 cctctctccc ataggatctt attaatatcc tctaatatcc gcggaccaaa ttcaatgcgt
     2341 acgtattcga gatttggctt cgattccatc tcagcctccg tgaaaaccag tgtctcggtc
     2401 gactg
//
LOCUS       DATDNM010000177         2458 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1198572, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000177 DATDNM010000000
VERSION     DATDNM010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1198572"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(67..816)
                     /locus_tag="VI413_03025"
     CDS             complement(67..816)
                     /locus_tag="VI413_03025"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HEY6913624.1"
                     /translation="MSGLLLLPVFGLAQASLKLDSKNIAAGETLNYKANWGFFTIGSA
                     TTKIDKTLYKVGSNVCYKIDIAGQTNGLAKLFYVRDKWTSYIDTASITTHKSYRSIRE
                     GRYELDELVRFDHVNKKAEVKVYNKKTKSYGLKQIYDTPENIRDVIAGFMVFRLVDLS
                     RYKKGQVFTINGFYDDEGYEIDVIFRGEEYVKNGNSKILCYKLEPIVPKNKVFDGKDA
                     VEVWLSADKTKKIIRIHARMFVGNVQIELQN"
     gene            complement(885..1313)
                     /locus_tag="VI413_03030"
     CDS             complement(885..1313)
                     /locus_tag="VI413_03030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913625.1"
                     /translation="MYIEIKQLHSLFAYLPLALLTFAIVFNAYSWLRKSPFNKTNKLI
                     TLLGMVSVHTQFVIGLILYLISPLGLSNFSGNAMKDSQSRLYVLEHPFVMIIALVLIT
                     IGYSKAKRQTDDTSKYKKIVIFYSIGLALILTRIPWSSWF"
     gene            1541..2107
                     /locus_tag="VI413_03035"
     CDS             1541..2107
                     /locus_tag="VI413_03035"
                     /inference="COORDINATES: protein motif:HMM:NF014376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY6913626.1"
                     /translation="MNRGKFILSVLAIYPLSMLAKLPIRIMTRTTKGFKVSSGEARYD
                     EHFKMKGVTLNVLDNKISSKDTAGDLAVFEQNGFTPNGGPPLHIHPYQDEFFYIIEGE
                     YLFQVGIEKYQLKQGDTIFLPRNVQHAFVQLTEKGKVIVSYMPAGKMEDFFRTTDSWT
                     SPPTLAEIEKAFEDHDMKVVGPPLSVDL"
     gene            complement(2199..>2458)
                     /locus_tag="VI413_03040"
     CDS             complement(2199..>2458)
                     /locus_tag="VI413_03040"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEY6913627.1"
                     /translation="KLFKEVLAHERLITASINKIVEQTLEEKDFTTDQWIQWYVNEQI
                     EEEKLVHQILDKLKILGDNNLYLFDRDIMSLRVPKSGTAAT"
BASE COUNT          776 a          480 c          424 g          778 t
ORIGIN      
        1 tgagaaaggt atgactgaac ggaaaatgct gaagagataa agtactacaa gattgagttg
       61 cagcaattag ttctgcagct caatctgtac atttccaaca aacatgcgtg catgaatccg
      121 gataattttc tttgttttat ctgccgataa ccacacctct accgcatcct tcccatcaaa
      181 gactttgttt ttaggtacaa tgggttccag tttgtaacac aatattttgg agttaccatt
      241 ctttacatat tcttcccccc tgaaaataac atctatttca tagccctcat catcgtaaaa
      301 tccgttgatg gtaaacacct gtcctttctt atatcttgat aagtcgacca ggcgaaagac
      361 catgaaaccg gcaattacat cgcggatatt ctcaggtgta tcgtaaatct gtttcaatcc
      421 ataggatttg gttttcttat tgtacacctt cacttcagct tttttattga cgtggtcgaa
      481 acgaaccagc tcatccagtt catacctgcc ctcgcgtata cttctatacg acttatgcgt
      541 agtaatgctg gccgtatcaa tatacgaagt ccatttatcg cgcacataaa ataatttggc
      601 cagcccgttt gtttgtcctg caatatcaat tttatagcaa acatttgacc ccactttata
      661 aagtgtttta tcaatcttgg tggtggcact gccaatggtg aaaaatcccc agttagcttt
      721 atagtttaac gtttcgccag cagcaatatt tttgctgtct aatttcaagc tggcttgtgc
      781 taaaccaaaa acaggtagta acagtaatcc cgacacgaaa aaatacttat aaatactcat
      841 cttcttaact ataaaataaa atttcggtgc tacggatatc tgatttaaaa ccagctactc
      901 cagggtatcc gtgttagaat cagagctaat ccaatggaat agaatattac aatcttttta
      961 tatttcgatg tatcatctgt ttgtcgcttt gcttttgaat aaccaattgt aatcaggact
     1021 aaagcaatga tcattacaaa aggatgttcc aacacatata aacgggattg tgaatctttc
     1081 attgcattcc cagaaaaatt gctcaatccg agtggagata tcaaatacaa tatcaatccg
     1141 ataacaaact gggtgtgaac agaaaccatg ccaagcaagg taatgagttt attcgtttta
     1201 ttaaaagggc tcttccttaa ccaagagtaa gcattgaaaa cgatggcaaa tgtaagaagt
     1261 gctaatggta aatacgcaaa taatgagtga agttgtttga tttcgatata cataattttg
     1321 atattaaatg ggccgattcc ggcattttag aaaatagtta tttttaattt agttgttttt
     1381 tgatagaacg ttttgcctgc cccaaagttt agtcctgtcc tgcccgttca aacaatgtat
     1441 agccgcagaa taagtcctca caaattatct aaaccttaca aaaccactaa ctttggttca
     1501 aaaagtttgt tgtataataa aactataaaa aagagacatt atgaaccgtg gaaaatttat
     1561 tttgtctgtt cttgccattt atccattgtc aatgttagct aaattaccaa tcagaattat
     1621 gacacgcacc actaaaggat ttaaagtaag ctcaggcgaa gcaagatacg acgaacactt
     1681 taaaatgaaa ggtgttaccc tgaatgtttt ggataacaaa atatcatcga aagatacagc
     1741 cggcgatctg gctgtttttg aacaaaacgg attcacgcct aatggcggac ctccattgca
     1801 tattcatcct tatcaggacg aattctttta catcattgaa ggagaatatc tttttcaggt
     1861 tggcattgaa aaatatcagc taaaacaggg agacaccata tttctgccca gaaatgtaca
     1921 acatgcattc gttcaactga ccgaaaaagg aaaagtgatt gtctcttata tgcctgcggg
     1981 aaaaatggaa gattttttca ggacaacaga ttcatggact tctcctccca cattagcaga
     2041 aattgaaaaa gcatttgaag accatgatat gaaggtagtt ggaccaccgc tgagtgttga
     2101 tttataatca ctttcaacac attttaaaat aaattcggtc cgggcaaatg ctaaacagcg
     2161 gcccgaaccg gatttgtttt ttgtcattta tgaaggtatt atgtagcagc agttcccgat
     2221 ttaggtacac gcaaactcat tatatccctg tcaaataaat acaggttatt atcacccagt
     2281 attttaagtt tatcgagaat ttgatgcacc agtttttctt cttcaatctg ttcattgaca
     2341 taccattgta tccactggtc ggtggtaaaa tctttttctt caagtgtttg ttccacaatt
     2401 ttattgattg acgccgtaat aagcctttcg tgtgccaaca cttctttaaa cagctttg
//
LOCUS       DATDNM010000178         2178 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1732217, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000178 DATDNM010000000
VERSION     DATDNM010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1732217"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..556
                     /locus_tag="VI413_03045"
     CDS             <1..556
                     /locus_tag="VI413_03045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913628.1"
                     /translation="MLYVRRDNPNLITWEFKSVKDFLAPEKSGYNNVYGLCHEMGHVC
                     MGNITPHYNWMTNDYSEGWANYFGSLMIEKVYKNLGVQAWPDQHDYLKSTGLQAFLKN
                     IKTNTSSKAKDFWYCSLFWYNLSSRIGKNNVRNFFYTIQMSDINIRNSDIKFLSLLKQ
                     YKLDSDFIEDFQKNKDCLLVTKKI"
     gene            878..1444
                     /locus_tag="VI413_03050"
     CDS             878..1444
                     /locus_tag="VI413_03050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4256 domain-containing protein"
                     /protein_id="HEY6913629.1"
                     /translation="MNSTKKELLPEQREALLKALKTRFEKNMNRHKNLEWANVRAKLE
                     AHAAKLWSINEMERTGGEPDVVGHDEKTGEYVFYDCSAESPKGRRSLCYDHEALESRK
                     EFKPEDSAVNMAADMGIELMTEGQYRELQMFGSFDAKTSSWVVTPAEIRKLGGAVFCD
                     RRYDHVFLYHNGAESYYAARGFRGSLRV"
     gene            1607..2026
                     /locus_tag="VI413_03055"
     CDS             1607..2026
                     /locus_tag="VI413_03055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913630.1"
                     /translation="MKKVFSILFAALILLSGMHLSFAAHLCGGEVSAVKLSFTHEKAG
                     CGMCALELPSPTTKTIESESCCKDEMSFFAVDNNYNPSTLQINHSANQLLQVFDIPKA
                     IGIQFLHTNSATNTNVQPPGNYIASAVSLPDICVFLI"
BASE COUNT          701 a          364 c          462 g          651 t
ORIGIN      
        1 catgttatac gtaagaagag ataatcctaa tcttataact tgggaattta agtctgtaaa
       61 ggattttttg gctcctgaga aaagcggata taataatgta tatggtcttt gtcatgaaat
      121 ggggcatgtt tgcatgggaa atattacacc tcattacaat tggatgacaa atgattatag
      181 tgaaggttgg gctaattatt ttggaagcct aatgatagag aaggtttata aaaatttagg
      241 agtacaagct tggcccgatc aacatgatta tcttaagtca acgggtttgc aggcttttct
      301 gaaaaacata aaaaccaaca catcatcgaa agcaaaagac ttttggtatt gctctttatt
      361 ttggtataat cttagttctc gaattgggaa aaataatgtt cgtaatttct tttatacaat
      421 tcaaatgagt gatataaata tcagaaacag tgatattaaa tttctatcgc tactaaaaca
      481 atataaattg gactcagact ttatcgaaga tttccagaag aataaggatt gcttactagt
      541 tacgaaaaaa atataactct tttcagctcc aagtctagga gatgaaagta attcaggttc
      601 aagtttcgcg aatcgaatat gtctttaatc gaacaaaatc caacatttgt tggtttgatt
      661 tccacagact ccatcctaaa aacaatttaa aataacagat taaaacgaat agaagaatga
      721 accccaaagt tgatgcgttt ttgagcaaag cggacaagtg gcaggacgaa atggagaaat
      781 ggagaatgat tgttctcgat tgtcagctga ccgaagaatt gaagtggggt gtttagtgaa
      841 tgaccgaata atcaacaaag ataaaagcaa gagcaatatg aatagcacta aaaaagagtt
      901 gttaccggaa caacgtgagg cactactcaa agcattgaaa acccgttttg agaaaaacat
      961 gaaccgtcat aaaaatcttg aatgggctaa cgttcgggca aaactggagg ctcatgctgc
     1021 aaaactgtgg tcgataaacg aaatggaaag aacgggtggc gagccggatg tagtggggca
     1081 tgatgaaaag acgggcgaat acgtttttta tgattgctca gcggaaagcc ctaaaggtcg
     1141 acgaagcctg tgttacgacc acgaagcact ggagtcaaga aaagaattta aaccggaaga
     1201 cagcgctgtg aatatggctg ctgacatggg cattgagctt atgacggaag ggcaataccg
     1261 ggaattgcag atgtttggaa gttttgatgc aaaaacatcg agctgggtgg tgacgcctgc
     1321 tgaaattaga aaactcggtg gagccgtatt ttgcgatcgt cgttacgacc atgtcttcct
     1381 atatcacaac ggtgctgaat cttattatgc tgcaaggggg tttcgtggat cgctaagagt
     1441 ctgattttta tatgtgcagc tgagttgcaa aatcaggaca tggtcgggtt ttaaggttgt
     1501 attgaaaatg caattacgaa actttaacgt gtaattttag ttatctaatt gctttttatc
     1561 ctacttttgc ctcaactatt tacaacttca gttgttttaa ggctaaatga aaaaagtatt
     1621 ctccatatta tttgctgcgt tgatactcct ttcggggatg catctttcgt ttgctgcgca
     1681 cttatgcggt ggagaagttt cggctgtaaa actgtcgttt actcacgaaa aagccggttg
     1741 tggaatgtgt gctttagagc tgcctagtcc aacaactaaa actattgaaa gcgaaagttg
     1801 ctgcaaggac gaaatgtctt tttttgcggt tgataataac tacaatccgt caactttaca
     1861 aatcaatcac tctgctaacc aacttttgca ggtttttgat attcccaaag ctattggaat
     1921 tcaatttcta catacgaatt ctgctacaaa cacaaatgtc cagccaccgg gtaactatat
     1981 tgccagtgct gtaagcctcc ccgacatttg tgtatttctg atttaaatct gcccctaaat
     2041 cccctaaagg ggactttaag acgtagtttc tttattgatt ccattatcaa tgaagcaata
     2101 tgtcgtttcc attatcccat ttatttataa aaatcaaggt cttaagctcc tttaggggtt
     2161 tggggtatat ttattaca
//
LOCUS       DATDNM010000179         2515 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_23630, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000179 DATDNM010000000
VERSION     DATDNM010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23630"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..782)
                     /locus_tag="VI413_03060"
     CDS             complement(<1..782)
                     /locus_tag="VI413_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018712163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY6913631.1"
                     /translation="MSKTLFDKIWDAHVVSAVENGPTQLYIDRHFCHEVTSPQAFNGL
                     RARGLKVFRPEQTTMTADHNTPTINQDQPVKDPISRNQLDTFAKNAADFNMPLFFPLG
                     HIKNGVVHIIGPENGFTHPGATIVCGDSHTSTHGAFGAIAFGIGTSEVEMVLATQCIL
                     QSRPKTMRITFNGKLGAGVTAKDLALYMISKLTTGGATGYFVEYAGEAIRNMSMEERM
                     TVCNLSIEMGARGGLIAPDQTTFDYVNGREFAPKGEEWDKKLA"
     gene            complement(913..2406)
                     /locus_tag="VI413_03065"
     CDS             complement(913..2406)
                     /locus_tag="VI413_03065"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEY6913632.1"
                     /translation="MDRLFIFDTTLRDGEQVPGCQLNTIEKIQVAKALESLGVDVIEA
                     GFPISSPGDFNSVVEISKAVTWPTICALTRGVQKDIDVAAEALKYAKNKRIHTGIGTS
                     EFHIKHKFNSTQDEILERAVAAVKYAKKHVEDVEFYCEDAGRTDNVYLARVVEAVIKA
                     GATVVNIPDTTGYCLPWEFGEKIKFLMENVNGVHNAILSTHCHNDLGMATANTISGVM
                     NGARQVEVTMNGIGERAGNTSLEEVAMILKCHKSLNIETQINTQRIYSTSRLVSGLMN
                     MPVQANKAIVGRNAFAHSSGIHQDGVLKNRESYEIMDPKDVGIDQNSIVLTARSGRAA
                     LKHRLSVLGIEVDNDKLDEIYNGFLNLADKKKDINDDDVLLLAGMERSEKQRIKLDYL
                     QVTSGVGVRAVASIGLIIANEKFEAAASGNGPVDAAIKALKQIIKREMNLQEFTIQAI
                     NKGSDDVGKVHMQVEHQGAVYYGFGANTDIVAASVEAYINAINKFIR"
BASE COUNT          735 a          591 c          448 g          741 t
ORIGIN      
        1 gcaagttttt tgtcccactc ttcaccttta ggagcaaact cacgaccatt aacataatcg
       61 aaagtagttt ggtcaggagc aatcaaaccg ccacgtgcac ccatttcgat agaaaggtta
      121 caaacggtca tacgctcttc catgctcata ttgcggatag cttcacccgc atattcaacg
      181 aaataacctg ttgcaccacc tgtagtcaat ttagaaatca tataaagtgc caaatcttta
      241 gcggttacgc ctgcaccaag tttaccatta aaagtaatac gcatcgtctt aggacgcgat
      301 tgaagaatac attgagtagc caataccatt tctacttcgc tggtaccaat accaaaagca
      361 atagctccga aagcaccatg agtagaagta tggctatcgc cacacacaat ggttgcaccc
      421 ggatgagtaa aaccattttc cggaccgata atatgaacaa ctccgttttt aatatgacct
      481 aatggaaaaa ataacggcat attgaaatca gccgcatttt tcgcaaatgt atccaattga
      541 ttacgtgaaa tcggatcctt aacgggttga tcctgattga tagtcggagt attgtggtct
      601 gctgtcatgg tggtttgttc cggacggaac actttcaatc cacgagcacg aagtccgtta
      661 aatgcctgtg gactggtcac ttcgtggcaa aaatgacggt cgatatataa ctgagtcgga
      721 ccgttttcaa ctgctgatac cacgtgggca tcccagattt tatcaaataa tgttttgctc
      781 atatatttta aatatttatt acatgggaga gcggaattca aactccgcag tttctctctc
      841 ttttaattcc tcaaaaaaac ggagcggaat tccgttcagt ataaaaaacg gaagcggaat
      901 tccgtttcca aactatctta taaatttatt tattgcatta atataagcct caaccgaagc
      961 agctacaata tcggtattgg caccaaaacc gtaataaaca gctccctgat gctccacctg
     1021 catgtgaact ttacccacat catcgcttcc tttgttgata gcctggatag taaattcctg
     1081 cagattcatt tcgcgtttaa tgatttgctt caatgcttta atggcagcat ctacagggcc
     1141 atttccagat gctgcagcct cgaatttctc gttagcaatg atcaaaccaa tgctggctac
     1201 cgccctcact cccactccgg aagttacctg caaataatcc agttttatac gttgtttttc
     1261 actgcgttcc attccagcca gcaacaatac atcatcatca tttatatctt ttttcttatc
     1321 ggccaaattc aggaatccat tataaatttc atccaattta tcattatcaa cttcaatgcc
     1381 caatacactt aaccggtgtt tcaatgctgc acgaccgcta cgggctgtca acacgatgga
     1441 gttttgatcg atacccacat ctttcggatc cataatttcg tagctttcac gatttttcaa
     1501 cacgccatcc tgatgaattc cggaagagtg agcaaaagcg ttgcgaccta caatagcttt
     1561 attagcctgt accggcatat tcattaaacc agacaccaaa cgactggtag aataaatccg
     1621 ctgagtattg atttgagttt cgatattcaa tgatttgtga catttcaaga tcattgcaac
     1681 ttcttcgagc gaagtatttc cggcacgttc accgataccg ttcatagtta cttccacctg
     1741 acgggcacca ttcataacac ctgaaattgt attggcagta gccataccca aatcgttatg
     1801 acagtgtgtg gagagaatag cattatgaac accattcaca ttctccatca gaaacttgat
     1861 tttctcacca aactcccaag gcaagcaata acctgttgta tccgggatat ttacaactgt
     1921 agcaccagct ttgataaccg cttccactac acgggctaaa tatacattat cagtacgacc
     1981 ggcatcttca cagtaaaatt ccacatcttc aacgtgtttc ttagcgtatt ttacggcagc
     2041 aacagcacgt tccagaattt catcctgcgt agagttgaat ttatgtttaa tatgaaattc
     2101 ggaagttccg ataccggtgt gaatacgttt gttttttgcg tatttgaggg cttcggctgc
     2161 tacatcaata tctttttgaa ctccgcgtgt taacgcgcaa attgttggcc aagtaacagc
     2221 ttttgaaatt tcaaccactg agttaaaatc acccgggctg gaaataggaa accctgcttc
     2281 aatgacgtcc acacccaaac tttcgagtgc tttggcaacc tgaatctttt caatcgtatt
     2341 caactggcaa cccggaacct gctcaccatc acgtaaggtg gtgtcgaaga taaataatct
     2401 atccatattc tattgattta cccttacctc ctaaaggagg ataagagatt agttagtttt
     2461 tattttattg ttccccaaaa actcccacac aggtgcttgg agctgtatca aaaaa
//
LOCUS       DATDNM010000180         2343 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_23750, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000180 DATDNM010000000
VERSION     DATDNM010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23750"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..691)
                     /locus_tag="VI413_03070"
     CDS             complement(<1..691)
                     /locus_tag="VI413_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 31"
                     /protein_id="HEY6913633.1"
                     /translation="MKLKLLLIAGLFPFLCQGQVVKNFKQEKTGVTIVTDNGLLGIYP
                     IANNAARVKFSSNNETELPELVFGIDNPVPTFRIEETPSLITVKTAKITVAIDKQSGK
                     LSFLDATGKTLVNELAGSRKLVPGTVQGEPCFLAEQTFDSPTGEAIFGLGQFQDGQYN
                     LKGVARRLTQVNTQISLPFIYSSRGYGLLWHQYGLTDFNPADNSIVLNKLEQATAGNQ
                     EAEVTTTSGTQK"
     gene            complement(813..>2343)
                     /locus_tag="VI413_03075"
     CDS             complement(813..>2343)
                     /locus_tag="VI413_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-glucuronidase"
                     /protein_id="HEY6913634.1"
                     /translation="NNVNSSKLMLTTECLAKVKAIAEVLRPYGIKTYLSVKFSSPSLI
                     GGLKTSDPLNPEVIKWWKDKVTEIYKIIPDFGGFLIKANSEGEPGPQDFGRNHADGAN
                     MLADAVKPFGGIIMWRAFVYEANSKDRTCQAYKEFMPLDGQFRDNVIIQVKNGPVDFQ
                     PREPFTPLFGALKKTSAMPELQITQEYLGHSIQLVYLATMWEEFLKSETYQEGTGSTV
                     ARTTDGSIFPQKYTAIAGVANIGLDDNWCGHHFAQANWYAFGRMAWNNQVTSEKIADE
                     WIRLTFSAKAEKSTTLNTTDWQNNFLVPVKQLMLESHEAAVNYSMPLGLHHIFAGLNN
                     THYGPGPWFAPKGIRIDWTSAYYHKADSLGIGFDRTSKGSNAVSQYHEPLKSQFESVA
                     TCPEIYLLWFHHLPWDYKMKDGRILWDELCYTYDKGVNEVRQFQKTWDKVQPYVDAQR
                     FSEVQSKLRQQCRDAQVWKDGCLLYFQQFSKRPSPFDIERPVYDLNYLQKTDLTEILN
                     K"
BASE COUNT          659 a          502 c          466 g          716 t
ORIGIN      
        1 ctttttgagt gccggaggta gtggtgactt ctgcttcctg atttccggct gttgcttgct
       61 ccagtttatt cagtacgatg gaattatcag ccgggttgaa atcggtaagg ccgtactggt
      121 gccacaacaa accgtaaccc cgacttgaat agatgaacgg aagcgaaatc tgtgtattga
      181 cctgtgtcaa acggcgggca acgcctttta aattatactg cccatcctga aattgtccca
      241 agccaaagat tgcttcaccg gtaggagagt cgaatgtttg ttcggccaga aagcagggtt
      301 cgccctgaac cgtgcccggt acaagtttgc gcgaaccggc caactcattc actaaagtct
      361 ttcctgtagc atcaagaaac gatagttttc ccgattgctt atctatagca acggttattt
      421 ttgcggtttt tacagttata agcgaaggag tttcttcaat cctaaatgtc ggtaccggat
      481 tatcgatacc aaagaccaac tccggcaact ctgtctcgtt attgctcgaa aacttaaccc
      541 tggcggcatt gttggcaatg ggatagattc ctaataatcc attgtcagta acgatagtta
      601 cacccgtttt ttcttgttta aagtttttta caacctgccc ctgacagaga aaagggaata
      661 atccggcaat taataaaagt tttaatttca tgtttagata attgctttta aggtcacata
      721 gaactcgcat tagattttta tgctctatgg tttaagcatg attaaatgct cgttttgtgt
      781 taaataataa ataggtcaat aataatcaac gattacttat ttagtatttc agtcaaatca
      841 gttttctgca aataattcaa atcgtaaaca gggcgttcaa tgtcaaatgg actaggtctt
      901 ttgctgaatt gctgaaaata cagcaagcaa ccatctttcc aaacctgagc atctcggcat
      961 tgctgacgta gtttactttg aacctccgaa aaacgctgtg catcaacata gggctgtact
     1021 ttgtcccacg ttttttgaaa ctgacgcact tcgtttacgc ctttgtcata agtgtagcac
     1081 aattcatccc aaagaattcg cccatctttc attttatagt cccatggtaa atgatgaaac
     1141 cacaacaaat atatttcggg acaagttgct acactttcaa actgactttt caatggttca
     1201 tggtattgac ttacagcatt tgagcctttt gaggtacggt cgaaaccaat gcccaatgag
     1261 tcggctttgt ggtaataagc tgaggtccag tcaatacgaa taccttttgg tgcaaaccat
     1321 ggaccgggac cataatgggt attattgagt ccggcaaaaa tatggtgaag acctaatggc
     1381 atggaataat ttacagcagc ttcatgactt tctaacatca gttgttttac cggcactaaa
     1441 aagttgtttt gccaatcggt agtatttaaa gttgtagatt tctcagcttt agccgaaaaa
     1501 gtaagcctta tccattcatc tgcaattttc tcgcttgtca cctgattatt ccacgccatt
     1561 ctaccaaatg cataccagtt tgcctgtgca aaatgatgcc cacaccaatt gtcatctaaa
     1621 ccaatattag cgacaccggc tattgctgtg tatttttgag gaaaaatact gccatcggtt
     1681 gtgcgtgcaa cggtacttcc ggtgccttcc tggtaagtct cacttttcaa aaactcttcc
     1741 cacatagttg ccaaataaac caattggatt gaatgtccaa gatattcctg ggttatctgc
     1801 aactctggca tagcagaagt ctttttcaac gctccgaaga gaggtgtaaa cggttcacgc
     1861 ggttgaaaat caacaggacc atttttaacc tgaatgatta cattatcgcg gaactgtcca
     1921 tcaagcggca taaactcttt gtaggcctga catgtacgat ctttgctgtt ggcttcataa
     1981 acaaaagcac gccacatgat aataccgcca aagggtttaa ctgcatcagc caacatgttg
     2041 gcaccatcgg catggttgcg tccaaaatcc tgaggaccag gttccccttc gctgttggcc
     2101 tttattagaa aaccgccaaa gtcggggata attttgtata tttcagttac tttgtctttc
     2161 caccatttta tgacttcggg atttaaagga tcggatgttt ttaaacctcc aattaaagat
     2221 ggagatgaaa atttgactga aagataggtt ttaataccat atggacgaag aacttcggca
     2281 attgccttca ctttcgcgag acattccgtc gtcaacatta gctttgaaga gttaacgttg
     2341 ttc
//
LOCUS       DATDNM010000181         4058 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1090993, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000181 DATDNM010000000
VERSION     DATDNM010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4058
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1090993"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2228)
                     /locus_tag="VI413_03080"
     CDS             complement(<1..2228)
                     /locus_tag="VI413_03080"
                     /inference="COORDINATES: protein motif:HMM:NF012931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 20 glycosylhydrolase"
                     /protein_id="HEY6913635.1"
                     /translation="MTKYSAVFRSILLKIIFLFGCCPLSTVSAGLYNIIPYPQHLIPQ
                     SGKFTFNKRTVIMCAGQNAEVLKLARQFSDQMALVSGLKLPVKEMQQADTANAVIFQP
                     DKSQAGNDEAYSLNISAKTIRIKASASNGAFYSLQTIYQLLPSAIYGKTKATVKEWSV
                     PAVSIADVPRFAYRGLHLDVCRHFFPVEFIKKYIDAMAIHKFNRFHWHLTDDQGWRIE
                     IKKYPLLTKVGSRRVETLVGYYFENFPQRFDDDAYSGFYTQDEAREIVAYAKERFITV
                     IPEIEMPGHAVAAIASYPYLSCNRTPMKVETRWGIFKDVFCTRDSTFTFLEDVLTEIM
                     DIFPGKYIHIGGDECPKDRWKTCPDCQAKIKSLNLKDESELQSYFIHRIEKFLNAHGR
                     QIIGWDEILDGGLAPNATVMSWRGTKGGIAAAQSGHDVIMTPTSFCYFDQYQSDPVTE
                     PTTIGGFIPLKRVYFYEPVPEELTPDQAKHILGAQANLWSEYMPNTERVEYMAYPRAS
                     AMAEVLWSEPTNRNWDRFRGNMAKEYERLAAMNIRPANVFFDVQCQSSVSADRKVLVT
                     LEADNPNAEIRYTLDGSSPTAKSKLYTEPLKLSEPATVKAVAVEKGKITGKEFSKSFI
                     VSKATGLSYVQNPINTWYRGDNVYSLTDGVIGNTKSISQWIAVGGSKDGEFVIDLLKT
                     QNINRLSVGLLNAPAFCGLYPPEIKVFTSADGSNYTQVASQTVAQRTTGAWEIYRPEL
                     VFP"
     gene            2495..3118
                     /gene="udk"
                     /locus_tag="VI413_03085"
     CDS             2495..3118
                     /gene="udk"
                     /locus_tag="VI413_03085"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009317603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004849 - uridine kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEY6913636.1"
                     /translation="MLIIGIAGGTGSGKTTVVRKILERLPEGEVVILPQDSYYRDSSH
                     LPLEERLEINFDHPDSIEFELLVKHLKELKKGKTIDQPIYSYLTCTRATETIPIKPRH
                     VIIVEGILVLTNPELRKMIDLKVFVDADADDRLIRVINRDIVERGRSVNKVMERYECT
                     VKPMHQQFIEPTKRFADLIVPQGGNNHIAIDILTNYIENKLAPAPSL"
     gene            3193..3981
                     /locus_tag="VI413_03090"
     CDS             3193..3981
                     /locus_tag="VI413_03090"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEY6913637.1"
                     /translation="MLDPLLGLVGKPKIMQRNDLPKIMFLDIETVPQTSDFSELPAEL
                     AHLWEDKFNLIHKRMPEKYTDETNAGEAFNNSAGIYSEFGKIVCISVGFIHFNSTHMH
                     FRTKSFCGDDEKQLLSDFNQLIGKFCTSREHTLCGHNIKEFDIPYICRRMLINGLSLP
                     PIFQIAGKKPWEISFIDTLELWKFGDYKNYTALKLLTAVFGIPTPKDDIDGSEVARVY
                     YQEKDINRIALYCQKDVVATAQVFLRLNGMELIKPENIEHINSL"
BASE COUNT         1206 a          893 c          817 g         1142 t
ORIGIN      
        1 gggaaaacaa gttcaggacg gtaaatttcc cacgctccgg tagttcgttg cgcaacggtt
       61 tgggaagcca cctgagtgta attgctgcca tcagccgaag taaagacttt tatttcgggc
      121 ggatataggc cgcaaaaggc cggcgcattg agtaaaccca ccgacaggcg attgatattt
      181 tgcgtcttca gcaaatcaat aacaaattcg ccatctttgc tcccgcccac ggctatccat
      241 tggcttatcg attttgtatt accaattaca ccatctgtca gcgaatatac attatcaccc
      301 ctgtaccatg tatttatcgg gttctgcacg taacttagtc cggtagcttt actcacaatg
      361 aacgatttcg aaaactcttt ccctgtaatc tttccttttt ccaccgctac cgcttttact
      421 gttgccggtt cgcttagttt cagaggctcg gtatatagtt tcgattttgc agttggtgag
      481 cttccatcaa gggtgtaacg gatttctgca ttcggattat ctgcttccag cgttaccagc
      541 actttccggt cagcagaaac cgacgactgg cattgaacat cgaaaaagac gttggccggc
      601 cggatattca tggctgcaag ccgctcatac tccttagcca tattcccgcg gaaacggtcc
      661 cagttacgat tcgtgggttc gctccaaagc acttccgcca tagccgaagc acgcggatag
      721 gccatatact ccactctttc cgtattcggc atatattcgc tccacaaatt agcctgggct
      781 cccagaatat gttttgcctg atcgggtgtc agttcttccg gaaccggttc gtaaaaatac
      841 actctcttca acggaataaa accgccaata gtggttggtt cagttacagg gtcggactgg
      901 tattgatcga aatagcaaaa cgaagtaggc gtcataatca catcgtgccc cgattgagca
      961 gcagcaattc ctccctttgt tcctcgccag gacataaccg tggcattggg cgccaaccca
     1021 ccgtccagaa tttcgtccca cccaataatc tgacgcccgt gtgcattcag gaatttttct
     1081 atccggtgaa taaaataact ctgcaattcg ctttcatctt tcaggtttaa cgatttaatc
     1141 ttcgcctgac aatccggaca ggtcttccaa cgatccttcg gacattcgtc accaccgata
     1201 tgaatgtatt taccgggaaa aatatccata atttcagtca acacatcttc cagaaacgta
     1261 aatgtagaat cgcgtgtaca aaaaacatct ttgaaaatac cccatctggt ttctaccttc
     1321 ataggcgtgc ggttgcacga caaatatgga tacgacgcaa tggccgcaac ggcatgtccg
     1381 ggcatttcta tctccggaat taccgtgata aaacgctctt tggcataagc cactatctcg
     1441 cgggcttcat cctgtgtgta aaatccactg taagcatcat catcaaaccg ttggggaaaa
     1501 ttctcgaaat aataacccac caacgtttct acccgccgtg aacccacttt ggtcaacaaa
     1561 ggatactttt ttatttcaat gcgccagccc tggtcatcag tcaaatgcca gtgaaaacga
     1621 ttgaacttat gaatagccat cgcatcgata tatttcttga taaactcaac gggaaagaag
     1681 tgccggcaca catccaaatg cagtccgcga taagcaaacc ttggcacatc ggcaatgctg
     1741 acagccggaa cagaccattc tttcaccgta gcttttgttt tgccataaat ggcagatggc
     1801 aaaagttggt atattgtttg taaggagtag aacgctccat tggaagccga agcttttata
     1861 cgaattgttt ttgctgagat attcagcgaa tatgcctcat cattaccggc ctgggattta
     1921 tccggttgaa aaatgacagc attagccgtg tctgcctgct gcatttcctt tacaggcaat
     1981 ttcaagcctg acactaaggc catttgatcg gaaaactgcc gggcaagttt tagtacttct
     2041 gcattttggc cggcacacat tatcacggtt cgtttattaa atgtaaattt gcctgattga
     2101 ggtatcagat gctgaggata tggaatgata ttatacaaac cggccgaaac agtgctcaat
     2161 ggacaacaac caaaaaggaa aatgattttc aggagaatgg aacgaaaaac agctgaatat
     2221 tttgtcatat ttaaatggta tttttaaaat taagtacgac aaatatacaa catattgtcc
     2281 tggatttttt gagatttaaa acaaaacagg tcatatttca cctgtttatt ttcaattttc
     2341 agcaaaaaag aagcttcgga caaaaacatg attcaactga ttatcaaagt tataaaacaa
     2401 ccgaaacggg catatataaa aaaaacaact gacaaagacc aatgaaaaaa aataaatagt
     2461 tattttagtg gtcttaaaac taataagaat attcatgcta ataattggta ttgcaggtgg
     2521 aacaggttcc ggaaaaacca ctgttgttcg taaaattctg gaacgattgc ctgagggcga
     2581 agtagttatt cttccgcagg actcctatta tcgtgatagt agccatttgc cacttgaaga
     2641 aaggctcgaa atcaattttg atcatccgga ttctattgaa tttgagttat tggttaagca
     2701 tttaaaagaa ctgaaaaagg gtaaaaccat cgatcagcct atctattcgt acctgacatg
     2761 tacacgtgct accgaaacaa ttcccattaa accccgccac gttattattg tagaagggat
     2821 tttagtactt accaatccgg aattgcgtaa aatgatcgac ctgaaagtat ttgtggatgc
     2881 cgatgccgac gacaggttga ttcgcgttat aaaccgggat attgtggaac gcggccgttc
     2941 ggtaaataaa gtgatggaac gctacgaatg cactgtaaaa ccaatgcacc agcagtttat
     3001 agaaccaacc aagcgttttg ccgacctgat tgttccacaa ggaggcaaca atcatattgc
     3061 catcgatatt ttgacaaatt atattgaaaa taaattagcc cccgctccat ctttataaat
     3121 gtggataaat tgcgggaaac ccgattaatt ttgccgaaca tatcttatta tattaattta
     3181 atcacataaa acttgcttga tccacttctg ggattagtgg gtaaacctaa aattatgcag
     3241 cgcaacgact tgccaaaaat catgttcctg gacattgaaa cggttccaca aacatctgac
     3301 ttttctgaat taccagccga actggcacat ttgtgggaag ataaattcaa tctgattcac
     3361 aaacgtatgc cggaaaaata cactgacgaa actaatgccg gagaagcatt caacaacagt
     3421 gccggcattt attcggaatt tggcaaaatt gtttgtattt cagtcgggtt tattcatttt
     3481 aatagcactc atatgcattt ccgcaccaag tcgttttgcg gagatgatga gaagcagttg
     3541 ctctctgatt tcaaccagtt aataggcaag ttctgcacaa gcagggaaca tacgctttgc
     3601 ggccacaaca ttaaagagtt tgatattccg tatatttgcc gtcggatgtt aatcaacgga
     3661 ttaagcctgc ctcccatttt tcagattgca ggcaaaaaac cctgggaaat ttcgtttatc
     3721 gacacgctgg aactctggaa gtttggcgat tataaaaact atacagccct gaaattgctt
     3781 acagctgtgt ttggcattcc tacgcccaaa gatgacattg atggaagcga ggtagcccgt
     3841 gtatattatc aggaaaaaga tattaaccgt attgcgcttt attgccaaaa agatgtggta
     3901 gccaccgctc aggtattcct gcgactgaat ggaatggaac tgattaaacc tgaaaatatt
     3961 gaacatataa atagtttatg attattcgca aagtatccta aaaatgggaa tatcttattt
     4021 gagcgggttt cgcggtttct aaccgcgatc ttagcttt
//
LOCUS       DATDNM010000182         3224 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1732580, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000182 DATDNM010000000
VERSION     DATDNM010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3224
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1732580"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1380
                     /locus_tag="VI413_03095"
     CDS             <1..1380
                     /locus_tag="VI413_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005675690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEY6913638.1"
                     /translation="DRLYFDELSFERVMDIIDMENPMGTIVSTGGQIPNNLALKLAGA
                     NVNILGTQANYIDMAEDRHKFSSMLDTLKIDQPRWKELTTFEDVNEFVDGIGYPVLVR
                     PSYVLSGAAMNVCYDASQLENFLKLATDVSKKHPVVISEFIERCKEIEIDAVANKGEI
                     LVYAISEHVEFAGVHSGDATTQFPPQKIYVETIRRIKKIASEIAKSLNISGPFNIQFL
                     AKDNYIKVIECNLRSSRSFPFVSKVLKLNFIELATKVMLGLPVEKPEKSAFDLDYVGI
                     KASQFSFARLQQADPVLGVDMASTGEVGCIGDDFSEAILKSLLSVGYRIPKKRIMISS
                     GETKSKVELSAACQLLQKKGYELFATRGTQQFLAENGVTATAVNWPDEDGELNVKNMI
                     SNKEFDLVINIPKNTTKRELANDYIIRRGAIDFNIPLFTNARLASAFINAFCTKSMED
                     IKIKSWDEY"
     gene            1596..1844
                     /locus_tag="VI413_03100"
     CDS             1596..1844
                     /locus_tag="VI413_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018696647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4160 domain-containing protein"
                     /protein_id="HEY6913639.1"
                     /translation="MPTLFIFFGLRFLFYSNDHEPIHIHVIKGKGKGECQAKFSVSPE
                     IMLIENDGLKPQEIKLAEMIIEENKEIIIEKWNEFFGK"
     gene            1866..2285
                     /locus_tag="VI413_03105"
     CDS             1866..2285
                     /locus_tag="VI413_03105"
                     /inference="COORDINATES: protein motif:HMM:NF021873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2442 domain-containing protein"
                     /protein_id="HEY6913640.1"
                     /translation="MIIDIKRVWVDDVSIYIETRQGQIRSLAIADFRLLRNATPEQLQ
                     NFEVGKFGIHWENLDEDLSFDGFFKENPEEVAPEIASIFNSFPEINLSAIAKRVGINQ
                     SLMAKYKCGILKPSPKRLKEIESALHELGSELLAVHL"
     gene            2481..2831
                     /locus_tag="VI413_03110"
     CDS             2481..2831
                     /locus_tag="VI413_03110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913641.1"
                     /translation="MILFFVVLFSITGKSEKPTYNDTVYGLSTELHSGSAKAFISDSF
                     HLPTFQKGLLTSTDVKGFILYNSKFRIAADNSNISLQISLLEKTLPLLKPLSTCRFYY
                     HLFHIDASDAPALS"
     gene            2912..>3224
                     /locus_tag="VI413_03115"
     CDS             2912..>3224
                     /locus_tag="VI413_03115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913642.1"
                     /translation="MKTKINSIIAVALIAIMVLGFTNKVNATTSILIQSDDKSCSPVT
                     LSESVTIISNRLKDYSSGKFELVAMPEKNQIMITLSDNWDVKVAEKLLTQKGKIGFYT
                     TY"
BASE COUNT         1054 a          603 c          616 g          951 t
ORIGIN      
        1 gaccgtctgt acttcgacga attgagcttc gagcgcgtga tggacattat cgatatggaa
       61 aatccaatgg gaactatcgt ttctacggga ggtcagattc caaacaattt ggcactgaaa
      121 cttgccgggg caaacgtgaa catacttggt acgcaggcta actatatcga catggccgaa
      181 gaccgtcaca agttctcttc catgcttgat acgttgaaaa ttgaccaacc acgctggaaa
      241 gaattgacca cattcgaaga tgtaaacgaa ttcgttgacg gtattggtta tcctgtattg
      301 gttcgtccgt cgtatgtact ttcgggcgct gccatgaacg tatgttatga tgcttcgcag
      361 ctggaaaact tcctgaaact ggctactgat gtatctaaga aacatccggt ggtaatctcg
      421 gaatttatcg aacgttgcaa agaaatagaa attgatgctg ttgcgaataa aggtgagatt
      481 ttggtgtatg ccatttcgga acacgtggaa tttgccggag ttcactcggg tgatgctacc
      541 acgcaattcc ctccgcaaaa gatctatgtg gaaacaattc gtcgcattaa gaaaattgcc
      601 agcgaaattg ctaaatcact gaacatttct ggaccattta atatccaatt cctggctaaa
      661 gacaactata tcaaggtaat tgagtgtaac ctgcgttctt cacgtagttt cccattcgta
      721 tcgaaagtat tgaaacttaa ctttatcgaa ctggccacca aagttatgct tggcctgcct
      781 gttgaaaaac ctgagaaatc ggcgttcgac cttgattatg tgggtatcaa agcttcgcaa
      841 ttctctttcg cacgtttgca gcaagccgac cccgttttgg gtgtggatat ggcttcaacc
      901 ggtgaagtag gttgtattgg tgatgatttc tcggaagcaa tcctgaaatc attactgtcg
      961 gttggttatc gcatcccaaa gaaacgcatt atgatttctt cgggcgaaac aaaatcgaaa
     1021 gtggagcttt cagcagcttg tcaattgtta cagaaaaaag gttacgaact cttcgcaacg
     1081 cgcggaacac aacagttcct ggctgaaaac ggagtaactg caacagctgt aaactggcct
     1141 gatgaagatg gagaattgaa tgtaaaaaat atgatttcca acaaagaatt tgatttggtt
     1201 atcaacattc caaagaacac caccaaacgt gagttggcaa acgattatat tattcgccgt
     1261 ggtgctatcg acttcaacat tccattgttc accaatgccc gcctggcttc tgcctttatc
     1321 aatgccttct gcaccaaaag catggaagac attaagatta agagctggga tgaatattaa
     1381 atagtttata gtacatagtt aatagtcact aggtgataca acataaaaca gccggttgca
     1441 gcaatgcgat cggctgtttc atatttatat attatggttt caaatagccg actcaacgtt
     1501 aaagttttta aatatcatca aaaattctac atacttttca aataaggaat aaatttattc
     1561 cttatttttg cagtataatt aagtaataaa gaagtatgcc aacattattt attttcttcg
     1621 gactacgttt ccttttttat tcaaatgatc atgaacccat tcatattcac gtgataaagg
     1681 ggaaaggaaa aggtgaatgt caagctaaat tttctgtatc accggaaatt atgcttattg
     1741 aaaatgatgg tttgaaacct caggaaataa agttagcgga aatgataatt gaagaaaaca
     1801 aggaaattat tattgaaaaa tggaatgaat tctttggaaa ataataaact taaaccttta
     1861 gcgccatgat aatagatatt aaaagagtat gggttgacga tgtatcaata tacattgaaa
     1921 ccaggcaagg acaaatccgc agtttagcta ttgcagattt tagattgcta agaaatgcca
     1981 ctccggaaca acttcaaaac tttgaggttg gtaaatttgg aatccattgg gaaaatctcg
     2041 atgaagattt gagttttgat ggttttttta aagaaaatcc agaagaagtt gcacccgaaa
     2101 ttgcaagtat tttcaattca tttcctgaaa taaacctttc agcaatagcc aaacgtgttg
     2161 gaatcaatca aagtttgatg gcaaaataca aatgtgggat tttgaaacca tcacctaaaa
     2221 gactaaaaga aattgaaagc gctttgcatg aattaggttc tgaactttta gcagtgcatt
     2281 tgtaggcata tttcataata taaacagccg attgcagcaa tgcgatcggc tgttttggtt
     2341 tatattttac aaattaataa tcaggtaaac caattttaca aaaaaataaa cttatatttg
     2401 cacccataat ctgagagttc atttgtacta tggttgacag aaaagaagac ataacacaac
     2461 atatagccag aatcattttt atgattctgt tcttcgttgt cttgttttct atcaccggga
     2521 aatcggaaaa accaacctac aacgatacag tatatggact aagtaccgaa ttgcattcag
     2581 gttctgcaaa ggcatttatc agcgattctt tccatctgcc cacatttcaa aaaggccttc
     2641 tgacttctac cgacgtaaaa ggtttcatac tttacaactc taagttcaga attgctgccg
     2701 acaacagcaa catttcgctg caaatcagtt tgctcgaaaa gaccctgcca cttctaaagc
     2761 ctctgtcgac ctgtaggttt tattatcatc tattccacat agatgccagt gacgcccctg
     2821 ctttaagtta aattcccgtt ttacaatatt ttatcaatat cccgctttgg aaatgaagtg
     2881 ggcatacatc taatttaaaa aattcacaac aatgaaaaca aaaataaatt caattattgc
     2941 tgtcgcactg atagctatta tggttttagg ctttacaaat aaagtaaacg ctactaccag
     3001 tattttaatt cagtccgacg ataaaagctg ttcgccagtg acgctttctg aatcagtaac
     3061 tattatttcg aacagattga aagactatag ttccgggaaa tttgaactgg ttgcaatgcc
     3121 cgaaaagaac caaatcatga ttaccctctc tgacaattgg gatgtaaaag tggcagagaa
     3181 actacttacc caaaaaggga aaataggatt ctatacaact taca
//
LOCUS       DATDNM010000183         2522 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1305535, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000183 DATDNM010000000
VERSION     DATDNM010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1305535"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /locus_tag="VI413_03120"
     CDS             <1..198
                     /locus_tag="VI413_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007483079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HEY6913643.1"
                     /translation="HLTPRQREIFELSKEKGLSNQQIAVELKISNQSVKNQLSTSLHI
                     LQSQLNTRMWTLLLLLYLQKS"
     gene            395..601
                     /locus_tag="VI413_03125"
     CDS             395..601
                     /locus_tag="VI413_03125"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEY6913644.1"
                     /translation="MDASATLTSAMVASTKKIVLGDSPAWPGRFFNGQMSDLRFWNVA
                     RSQAQIVADMTSTLTGSEAGLVAG"
     gene            605..952
                     /locus_tag="VI413_03130"
     CDS             605..952
                     /locus_tag="VI413_03130"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913645.1"
                     /translation="MNEGTGTIVTDITGTHNLTKPADVTWFGTAAGVESVSGAALNIE
                     SKIYGHTLEVSNKTNGKLQLSIYSVTGQKVMEDILIVDTKFQKQLAHLKGAYILKCVA
                     KDGSTYTKRFIVM"
     gene            1040..2035
                     /locus_tag="VI413_03135"
     CDS             1040..2035
                     /locus_tag="VI413_03135"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEY6913646.1"
                     /translation="MEKSSLYQLLSAYLRQKDVNSPRKEMDKAIRQTTDEELESVLSD
                     LWNDYELTESYDNEIEASFVALKRKIRLKTIRMQTIRYAKYAAIFLLPLVSALTVYLS
                     IERNSYLADNKAFSVHAASGKSSDVVLPDGTVVMLNSESTISYNNDIQNQKRIVHLTG
                     EANFKVTKNPHKPFVVNTECFDVEVLGTTFNVKTYESDNEQEVALLEGKVKLTTRNQE
                     NNTSIFLKPNEKAIYNKSTGKLTVKPTDNKLETAWMKGVLMFHTESLLDINKELERKY
                     DVKIQMNCPALENDSFTGVFENKTLIEVLDNLKIHYGFDYSINNRKVLIYPDKMN"
     gene            2187..>2522
                     /locus_tag="VI413_03140"
     CDS             2187..>2522
                     /locus_tag="VI413_03140"
                     /inference="COORDINATES: protein motif:HMM:NF019283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STN domain-containing protein"
                     /protein_id="HEY6913647.1"
                     /translation="MNIIKIVNLKNSHKKWVFPIALFLLLTGSFNLSAQNRKVTLSLE
                     KVSLRQLFSEIEKQTDYKFLYREIILDDKKDISIKVAGKEVPAVLDQVLAGKDLQYKI
                     QGNTINIIRK"
BASE COUNT          912 a          453 c          447 g          710 t
ORIGIN      
        1 cacttaacac cacgtcaacg ggaaatattt gagctcagta aagagaaagg gctttccaat
       61 cagcaaattg cagtcgagct aaagatttcc aaccaatcgg taaagaatca actctctacc
      121 tcgttacata ttttgcagtc ccaactcaat acccgaatgt ggacattgct actccttctt
      181 tatttacaaa aaagctaacg ttcaaagcaa aatcacatct acctaaaata cagcaaatta
      241 cgctcacaca tcagacaaac agacaataga gagtctcaat acatgtttta caacatatac
      301 tgtctcatgg tacgtttgtt tgtctaatct gtattagcct atatctaatc tcaatttttt
      361 atttcaacgt tatatcatga aaaaaatcta ttctttggat gcttcagcta cactaacatc
      421 agctatggta gcttcaacca aaaaaatagt tttaggtgat agcccggctt ggccgggaag
      481 attttttaac ggacaaatgt ctgatctccg tttctggaat gtagccagaa gtcaagcaca
      541 gattgttgct gacatgacgt ctaccctcac aggatctgaa gccggattag ttgccggtta
      601 gaaaatgaat gaaggaaccg gaacgatagt gactgatatt acagggaccc ataatctgac
      661 taaaccggca gatgttacct ggtttggaac tgctgcaggt gttgaatctg ttagtggcgc
      721 tgcattaaac attgaatcaa aaatttatgg tcatacactt gaagtgtcaa acaaaacgaa
      781 tggaaaattg cagctctcaa tctatagcgt aacaggtcag aaagttatgg aagatatttt
      841 aatcgtcgat actaaatttc agaaacaatt agcacattta aagggggctt atattttgaa
      901 atgtgttgca aaagacggtt cgacctatac aaaaagattc attgtcatgt aaatcagcaa
      961 tgtaaaaaaa aaaatcaact gtcaaaaaaa gtccggaaat aatattgaaa attatcaata
     1021 attaagaaac agaacactta tggaaaaatc cagtttgtat caattactat cagcctatct
     1081 tagacaaaaa gatgtaaatt ctccccgaaa ggaaatggat aaggctattc gtcaaacaac
     1141 agatgaagaa ttggaatccg tgttgtctga tttatggaat gattatgagt tgacagaatc
     1201 atacgataat gagatcgagg cttctttcgt tgcgctgaaa aggaaaatcc gcttgaaaac
     1261 gatacggatg caaacgattc gttatgcaaa atatgctgca attttcctgc tgccactcgt
     1321 ttcagcactt acagtttatt tatccattga acggaatagc tatcttgctg acaataaagc
     1381 attctcggta catgctgctt ctggcaaatc atcggatgta gtccttccgg acggcacagt
     1441 ggtaatgctt aactcggagt ctactataag ctacaataac gatattcaaa accaaaaacg
     1501 cattgtgcac ctcaccggag aagccaattt caaagtaact aaaaatccac acaaaccttt
     1561 tgtagtaaat accgaatgtt tcgatgtaga ggtattggga acaactttta atgtaaaaac
     1621 ctacgagtct gacaatgaac aggaagtggc attgcttgaa ggtaaggtca agcttactac
     1681 ccgcaatcag gaaaataata cgagtatatt tttaaagcct aacgaaaaag caatttacaa
     1741 taaatcgaca ggcaaactta ctgtaaaacc tacggacaat aaacttgaaa cagcctggat
     1801 gaaaggtgta ttgatgttcc atacagagtc attgctagac atcaataagg aactggaacg
     1861 aaaatacgat gtaaaaatcc aaatgaattg cccggctttg gaaaatgact cgttcactgg
     1921 tgtttttgaa aataaaactt taattgaggt gctggataat ttaaaaatac attatggatt
     1981 tgactattca attaacaata gaaaagtgct gatatatccg gataaaatga actaattgta
     2041 aacctacaga taacaatata aaaaatacac aatgaaaatt acaaattctt cttagctttt
     2101 tctcttttaa atcatatttt gatacgcatc taaaacaatg tgtttaatgt ttaattctct
     2161 ttttactgac aacaatctat ttattcatga acatcataaa aatcgtaaat ttaaaaaaca
     2221 gtcacaagaa atgggtgttc ccgatcgcac tcttcctatt gttgacggga tcatttaatt
     2281 taagtgccca gaatcggaag gttacacttt cattggaaaa agtaagcttg cgtcaattat
     2341 tctctgaaat agaaaaacaa accgattata aatttttgta cagggaaata atcctggatg
     2401 acaaaaaaga tatttcaatc aaagttgccg gaaaggaagt tcctgcagta ctggaccagg
     2461 tgttggcagg caaagacctt cagtacaaaa tacagggaaa tacaattaat atcattcgga
     2521 aa
//
LOCUS       DATDNM010000184         4447 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_664351, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000184 DATDNM010000000
VERSION     DATDNM010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4447
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_664351"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..549
                     /locus_tag="VI413_03145"
     CDS             <1..549
                     /locus_tag="VI413_03145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913648.1"
                     /translation="TSFVVLTPIGVGAAAGLWSSVATEWKAGPDTVALVTGMLSAIVT
                     ALSCLFGGFISDKFGHWIAFFGSGALLALLTLFMGFTSFIPATFTGGVLLYAFIYGIN
                     FASFSAVVLHAIGKGLASTKYALLSSLANIPTTYMTALDGWMHDYFNIKFMLWGETII
                     GFTFILICLIIMQYYKLHKVSL"
     gene            complement(732..1688)
                     /locus_tag="VI413_03150"
     CDS             complement(732..1688)
                     /locus_tag="VI413_03150"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6913649.1"
                     /translation="MRTTLVIIVLFLSVFCKCLGQVDSTNLKVHAPERTKVIDVHIHA
                     PLCPGDVEGSSMQTVKIELVREMDSLNIVFGVLNGLPEFFEPWNKAAPGRFLNYILFP
                     CVDGKTPNFARDCFPGGKSFPDITWLENEIKKGKIHGFGEFVPEYIGMNPNDKTLEPY
                     WSLAEKYDIPVAIHMGIGPPNAAYPSNPCPYKSPNFRVSAGNPLLLEEVLLKHKKLRV
                     WVMHAGYPMLNEMIYILYAHPNVNVDTGVLQWAIPRKEYYSYLQRLVDAGYSDRIMFG
                     SDGNPGEGIKAIFEANFLTEQQRQDILYNNAVRFLKLRLKEN"
     gene            complement(2313..3503)
                     /locus_tag="VI413_03155"
     CDS             complement(2313..3503)
                     /locus_tag="VI413_03155"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY6913650.1"
                     /translation="MTTIPMLISGQRAKLIRLKVRFFIMQVALNHFRSPIRAIREMKK
                     LLALRRNVNGSVKMPKYINSGNQFFWNADYCGYPSENLKALLHKEFKRSQQAEIERPD
                     SALGLQTLIWGITNRCPLSCQHCYEWDNIAHTDKLDIESLKKMLNILRANGLRHIQFS
                     GGEPLSRFDDLLTLTKDASPDMDCWILTSGFGLSADKALALKEAGLKGAQISLDHWNA
                     GLHNNFRNNNKSYEMAISAVKNCRDAGIMVSLSLCATREFVSENNLMKYADLAKVLGA
                     NFIRILEPRAVGKFSNVNVALSTDQVDLLSDFVNQLNAGKRYKNYPIVTFFGYHQRKM
                     GCFGAGERYVYIDPNGDVHACPFCRGAMGNLLDEPFADIIRRVKMVGCHLFENHENDA
                     HNRF"
     gene            complement(3550..>4447)
                     /locus_tag="VI413_03160"
     CDS             complement(3550..>4447)
                     /locus_tag="VI413_03160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913651.1"
                     /translation="QNITVLADKYGVISTIEKPVAPSLVTSEAGVNITDQLLAKDKLF
                     YQSNPPKDQKPLKDYLILDFPASKNAKEAKLIIHAKNSILLDYMIGEYNKLFGTGYNK
                     YMKKLEKNSADKMKQWSLSQGIPLSVYVERAGNWEFVDYYNVAGPMAFKDDVLKVPLK
                     GNESDPLKLKLEFGAFLWEIDYVAVDYSEDQKLTTNIVPVKTAITEENKDVAGLLKQD
                     DANYYTQPVTTNQAVVTFDLPQLTNQSRTIILHTKGWYQILHNPEGEMDMQRLLKLKA
                     PGGFNHFVNEEIKSMEKRVAEP"
BASE COUNT         1270 a          981 c          783 g         1413 t
ORIGIN      
        1 acttcatttg ttgtcctcac accaatcgga gtgggagctg cagccgggct gtggtcatct
       61 gttgcaacag aatggaaagc aggtcctgac accgtagcac ttgtaacagg gatgcttagc
      121 gcaatcgtaa ctgcactgag ctgcttgttt ggcggattca tatctgataa attcgggcat
      181 tggattgctt ttttcggatc cggtgcattg ttggctttgc tcactctttt catgggattc
      241 accagcttta taccggctac atttacaggt ggtgttctac tttatgcctt tatctacggt
      301 ataaacttcg cgtcattttc tgcagttgtt ctacacgcaa tcggcaaagg acttgcctcc
      361 accaagtacg cgctgctttc ttcactggcc aatataccta ctacgtatat gacagcactg
      421 gatggctgga tgcatgatta ctttaatatc aagtttatgc tttggggaga aactattatt
      481 ggattcactt ttattctgat ctgcttgatt attatgcagt attacaaatt acacaaagtt
      541 agcttatgat tgattattgc ttactgccca aaactcaacc tggttcacgg tgtaatattt
      601 tccgtttttt tgagcgtcag gaaagttcca ggccataaag cgcttgctat ggaacaaata
      661 tatgtgaata gaataatacg tttcacatgc aaatgttgtg tccgttatgt tttccacatc
      721 tctcaatcca tttaattctc tttcaacctt agctttaaaa accgtactgc attattatat
      781 aaaatgtcct gtctttgttg ttctgtcaaa aagtttgctt caaagatcgc ttttattcct
      841 tctcctgggt ttccgtcaga accgaacatt attcgatctg aataaccagc gtccacaagt
      901 ctttgcaaat aggaataata ttcctttctg ggtattgccc attgaagaac accggtatcc
      961 acattcacat tcggatgtgc atatagaata taaatcatct cgtttaacat tggatatccg
     1021 gcatgcatta cccatacacg taatttttta tgcttcaata aaacctcttc aagcaataat
     1081 ggattgcctg cgcttactct aaagtttggc gatttatatg ggcaaggatt agaggggtag
     1141 gctgcgttgg gcggccctat tcccatatgg attgcaacag gtatgtcgta cttttctgct
     1201 aaactccaat atggttcgag tgttttgtca tttggattca ttccaatata ctcaggtaca
     1261 aattcaccaa atccatgtat ttttcctttc ttgatttcgt tctccaacca agtaatatca
     1321 ggaaaagatt tacctccagg aaaacagtcc ctggcaaaat ttggagtttt tccgtcaaca
     1381 catgggaaaa gaatataatt caaaaatctt ccaggtgccg ctttattcca aggctcaaaa
     1441 aattcgggaa gcccattcaa tactccaaat acaatgttca aactatccat ttcacgaaca
     1501 agttcaattt tcactgtttg cattgaactc ccttcaacat ctcccgggca aagtggtgca
     1561 tggatatgga cgtcaattac ttttgttctt tccggagcat ggacttttaa attagttgaa
     1621 tcaacttgtc ccaggcattt gcaaaaaacg gaaagaaaca atacgataat tactaatgtt
     1681 gttctcatat gcttatggtt tataacatac cttattttta ctttgaaagt aatgatctat
     1741 ttttattaaa ctaagaatag aggccattgg cactgcctta aagagacttt ccatctctca
     1801 tttctttcag gattatatcc ataatgaaag cccacagaaa tccggttgta tatgggcttg
     1861 tgaaacgaat catttgactt caagcatctt tacccttttc cagaaacgcc gcaacaagaa
     1921 aaagagcgga ggctaagggg aaaataatga aaattccaag ccgacctcct gtattttgaa
     1981 taaccgtcaa ggtaaatacc agtaaaaaag ctgccaatga cagaagcgct ccggctgttt
     2041 ctcatttcca ggctagtgcc aatcccagca aaccaatacc aaaaactgtc aactctaaaa
     2101 ttgcagataa accaagcggt tgggcattgg ctttctaagc actttctatt gcagaaccaa
     2161 caaacataaa taaggccaaa actactatga tcacactaaa gctgtgtgct gtcgaccgaa
     2221 caaattggat agacttattt ctgtaagact tttcaatgtt tgcttccatt ttatttagag
     2281 atttaatgct accaaattat tcaaattgaa atttaaaaac ggttgtgtgc atcattttca
     2341 tggttttcga acaaatggca tccaaccatt ttcactcttc taataatgtc cgcaaacggc
     2401 tcatccagca aattacccat tgcgcccctg caaaacggac atgcatgcac atctccgttt
     2461 ggatcaatat acacatagcg ttcaccggca ccaaaacacc ccatctttcg ctggtgataa
     2521 ccaaaaaatg taacaatcgg ataattttta taacgcttgc ctgcatttaa ttgatttaca
     2581 aaatctgaca aaaggtccac ttggtctgtt gacagggcaa catttacatt cgagaattta
     2641 cccacagccc gtggctctag tatccggata aaattcgcac ccagcacttt agccagatca
     2701 gcatatttca tcaagttatt ttcagaaaca aactcgcgtg ttgcacataa cgagaggctc
     2761 accataattc cggcatcacg acaattcttt actgccgaga ttgccatttc gtaactttta
     2821 ttgttattcc tgaaattgtt atgcaagccg gcattccagt ggtcaaggct tatttgggca
     2881 cctttcaggc cggcttcttt cagcgcaagg gctttatcag ctgacaaacc aaaaccggaa
     2941 gtcagaatcc aacaatccat gtccggtgaa gcatctttcg tcaatgtcaa taaatcatca
     3001 aaacgtgaca acggctctcc cccactaaac tgaatgtgcc taagcccgtt tgcccgcaga
     3061 atattcagca tctttttcag gctttcgata tcaagcttat cagtatgtgc aatattatcc
     3121 cattcataac aatgctggca cgacagtggg catcgatttg taatacccca tatcagcgtc
     3181 tgcaaaccca gagcactatc tggtctttct atttccgcct gctggctccg tttaaattcc
     3241 ttgtgtaaaa gtgctttcag attttctgaa ggatacccgc aataatcagc attccaaaaa
     3301 aactgatttc cggagtttat atatttcggc attttgaccg aaccattcac gttgcgacgc
     3361 aaagccaaaa gctttttcat ttcacgtata gcacggattg ggcttcgaaa atgattcaaa
     3421 gcaacctgca ttataaaaaa ccgtactttt aaccggatga gcttagctct ttggccggat
     3481 attaacatag ggattgttgt cataagcaaa gacaatattt aacattaaga cgcagttcct
     3541 gcctaatctt tacggttctg caacccgttt ctccatgctc tttatttctt catttacaaa
     3601 atgattaaaa cctcccgggg ctttcaactt caacaagcgt tgcatatcca tctcaccttc
     3661 cggattatga aggatctgat accagccttt tgtatgaaga attatcgttc gactctggtt
     3721 tgttagctga ggcaaatcga aagtcaccac agcctgatta gtcgttaccg gctgagtata
     3781 ataattcgca tcatcttgtt tcaataaacc tgcaacatct ttattctctt cagttatggc
     3841 agtttttacc gggacaatat tcgttgtcag tttttgatct tcagaataat caacagctac
     3901 ataatctatt tcccacaaaa atgctccaaa ctccagttta agtttaagcg gatccgactc
     3961 attgcctttg agtgggactt taagaacgtc atctttgaat gccatcgggc ctgctacatt
     4021 gtaataatca acaaattccc aattccctgc cctttcaaca tatactgaga gtggaattcc
     4081 ctgacttagc gaccattgtt tcattttatc ggcagaattc ttttccagct ttttcatgta
     4141 tttattatat ccggttccga acagtttatt atactcacct atcatatagt caagtaaaat
     4201 cgagttttta gcatggataa tcagctttgc ttcttttgca tttttgctgg ccggaaaatc
     4261 aagaatcagg taatctttta atggtttttg gtctttgggt ggattgcttt gataaaaaag
     4321 tttatccttt gcaagcaatt ggtctgtaat gtttactcct gcctcacttg ttaccaacga
     4381 aggtgcaaca ggtttttcaa tggtagaaat aacgccatat ttatcagcca gcacagttat
     4441 attttga
//
LOCUS       DATDNM010000185         2014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1091164, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000185 DATDNM010000000
VERSION     DATDNM010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1091164"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            349..1389
                     /locus_tag="VI413_03165"
     CDS             349..1389
                     /locus_tag="VI413_03165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HEY6913652.1"
                     /translation="MVKRYQFTGYIFSEIQRLFIAVNYLTIKRILNLCRLGLSYLLSV
                     TGRQKTSAVLPSFVSVETSNYCNLHCPECPVGMRQIPKTGHAHFDLTLYKKLINEQKS
                     TLLHVILYFQGEPLLNKQLTEFIQYAHDAKIYTSTSTNGQLLNKKNAKNIVLSGLDKL
                     IVSVDGSTQETYESYRIGGKLDKTLDGIRELVYWKNELKSVTPLLEIQFIVLKTNEHQ
                     LNEMKKLAKTLRADRLTFKTAQLYDFVNGNARLTSIDKYARYKHMPDGKYMLKGSQPN
                     RCWRLWSGAVINAQGEVLPCCFDKASEFSFGNLNEKSFAENWHNKKASGFRESILQNR
                     MQYEMCRNCTSK"
     gene            complement(1397..1750)
                     /locus_tag="VI413_03170"
     CDS             complement(1397..1750)
                     /locus_tag="VI413_03170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009134030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HEY6913653.1"
                     /translation="MKPIAICYPKCGTCQKAEKWLKANGIEYTYRPIKEENPTKEEIK
                     LWIDKSGLPVSKFFNTSGLLYKEHDMKDKVKVLPQDELIDILASNGMMVKRPILLAGN
                     KVLVGFKEEEWKTIL"
     gene            complement(1750..>2014)
                     /locus_tag="VI413_03175"
     CDS             complement(1750..>2014)
                     /locus_tag="VI413_03175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008771690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEY6913654.1"
                     /translation="GKMFPKAWDWQVFWSMTALLSVILAFMNFLPIPALDGGYVLFLI
                     YEMITGKKPNDKFLEYAQTVGFFLLMGLLIYANGNDLFKALFK"
BASE COUNT          632 a          362 c          366 g          654 t
ORIGIN      
        1 cttaacaggg aaagttcctg taatagttgc atcgatttta ccacctttta cttcaagcgg
       61 attaggatta catttaaaca tgcttggatc caatgcggtc atgtctttag cacatgaact
      121 aaggacaagc gcaagtacca atgaaactgc gaaaaataat tgttttctca taaaattgtg
      181 tttttgttat aaataattat ttgtttttct tttttagaca atttggatac aaatatacaa
      241 tctttcaatg aatttatctt actttgcatt tgattttgac aatttttcgt taatgatgtg
      301 ctaaaattca atttgtacca ctcccgcaag ttattaattc actttttcat ggtaaaaaga
      361 taccaattca cagggtatat tttcagtgaa atccaacgat tgtttattgc tgttaattat
      421 ttaactatca agagaattct taatctttgc agattgggtc tttcttattt actctcggtt
      481 acaggaaggc agaaaacaag tgctgtattg ccttcatttg tttctgttga aacttcaaat
      541 tattgcaatt tacattgtcc tgaatgtcct gttggcatgc gtcaaatacc taagaccggg
      601 catgcgcatt tcgatttgac gttatataaa aaacttatta atgagcaaaa atcgactctt
      661 cttcacgtga ttttgtattt tcagggagaa ccattgctaa ataaacaatt gacagaattt
      721 atacaatacg cgcatgatgc aaaaatttac acatctactt caacaaacgg gcaattactc
      781 aacaaaaaga atgccaaaaa tattgtactt tcaggcctgg ataaattaat tgtttcagtc
      841 gatggaagta cacaggaaac ttatgaaagt tatcggatag gagggaagct tgataaaacg
      901 ctggatggaa taagggaact tgtttattgg aagaacgaat tgaaatcagt gacacctttg
      961 ttggaaattc agtttattgt gcttaagacc aatgaacatc aattgaatga aatgaagaag
     1021 cttgcaaaga ctttgcgtgc tgataggcta acgttcaaaa ctgcgcagct ttatgatttt
     1081 gtaaatggaa atgcccggct cacttcgatt gataaatatg cacgatataa acacatgccc
     1141 gatggtaagt atatgctaaa aggcagtcag ccaaaccgct gttggcggct ttggagtgga
     1201 gctgtgataa atgcacaggg agaagttttg ccttgttgtt ttgataaagc ctcagaattc
     1261 tcatttggta atcttaatga aaaatcattt gcggagaact ggcataataa aaaagcttcc
     1321 ggtttcagag aatcaattct ccaaaaccgg atgcaatatg agatgtgccg gaattgtacc
     1381 agtaaatagt tgtcagttag agaatagttt tccactcttc ttccttgaaa ccgacaagaa
     1441 ccttatttcc tgcaagcaga atcgggcgtt ttaccatcat tccgttcgaa gccagaatat
     1501 caatcaattc atcttgggga agtactttga ctttatcttt catatcgtgc tctttgtaaa
     1561 gaagcccact tgtgttgaaa aatttactaa ctggtagtcc gcttttatca atccataatt
     1621 tgatctcctc tttagtcgga ttctcttctt ttatcgggcg ataggtgtat tcaatgccat
     1681 ttgccttcag ccatttttcc gctttttggc aagtcccgca tttcggataa catattgcaa
     1741 ttggtttcat tatttgaata gtgctttaaa taagtcattt ccattagcgt aaataagcaa
     1801 gcccattaga agaaagaatc cgacagtttg ggcatattcc aaaaatttat catttggctt
     1861 tttgcccgtt atcatttcgt aaatcaaaaa caaaacgtat ccaccgtcca gcgcaggaat
     1921 aggtaggaag ttcataaacg ccaaaataac cgaaagcagt gcggtcattg accagaaaac
     1981 ctgccaatcc catgccttag gaaacatttt tcca
//
LOCUS       DATDNM010000186         2257 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_451355, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000186 DATDNM010000000
VERSION     DATDNM010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451355"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..349)
                     /locus_tag="VI413_03180"
     CDS             complement(<1..349)
                     /locus_tag="VI413_03180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEY6913655.1"
                     /translation="MEFKSRKQNRKKGFDYSSEQIYFVTICTNDKRHDFGFVNANCMI
                     LNKYGKIAEQQIEWLEEQYPYISIHNAVVMPNHVHILFEIDVRKELENMKIKSVSELI
                     GAYKTTTSKTIHLL"
     gene            complement(402..1718)
                     /locus_tag="VI413_03185"
     CDS             complement(402..1718)
                     /locus_tag="VI413_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIID/LytB domain-containing protein"
                     /protein_id="HEY6913656.1"
                     /translation="MKKKEPIIQVGILSASEIRFVLNGYFKVSNDRFYTGKKVAVYRK
                     GDILFDGNLSEDLSFEPMSDDCSIDIKDVVIGINFHWQRRENQRFKGSLKFIVEGGKL
                     TAINQIKVEDYLTSVISSEMSATASEELLKAHAVISRSWLLNPIMNKKKDTDQNISLI
                     READRIIRWYERDAHKRYDVCADDHCQRYQGITRASTETVAKAIEATRGEVLMADKKI
                     CDARFSKSCGGISEAFENCWAPEHHSYLIPVVDNNDVPLGFELDLTDETNAEEWIRRS
                     PEAFCNTTDKNVLAQVLNNYDQETTDFYRWKVEYTQEEVAELLARRSNIHFGQIIDLI
                     PEKRGASGRIIELKIVGTERTMTVGKELEIRKWLSNSHLYSSAFVVDKSDIENGIPQH
                     FTLTGAGWGHGVGLCQIGAAVMGEKGYKYDQILLHYFREAELKKIY"
     gene            complement(1731..2078)
                     /locus_tag="VI413_03190"
     CDS             complement(1731..2078)
                     /locus_tag="VI413_03190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913657.1"
                     /translation="MDDKLQSTNAYPHNGNMLRDYFKLHGVNKAELARRISVAGSTVQ
                     QYLDSQSLQLGILWKISLALKHNFVAELGEKLQVDYTTQRETELQQQIKDLQSELEKT
                     KFELSIYKNIVGK"
BASE COUNT          557 a          479 c          451 g          770 t
ORIGIN      
        1 ccaataagtg aatcgttttt gaagtagttg ttttgtaagc tccaatcaat tccgagaccg
       61 attttatttt catgttttcc aattcttttc tcacatctat ctcaaataaa atgtgcacat
      121 ggtttggcat caccacggcg ttatgaatac ttatataggg atattgttct tccagccatt
      181 ctatttgttg ttctgcaatt tttccatatt tgtttaatat catgcagttg gcattcacaa
      241 aaccgaaatc atgtcttttg tcatttgtgc aaatggtcac aaaatagatt tgctccgaac
      301 tgtaatcgaa tccttttttg cgattttgtt ttcggctttt aaattccaag gtaaacgatt
      361 ttttgtgttt ttaggacagg tcacgacctg tccctacagc atcaatatat tttcttcaat
      421 tcagcttccc ggaaataatg caacaaaatc tggtcgtatt tataaccttt ttcgcccatt
      481 acggcagcac caatctggca aagacccacc ccgtgccccc aaccggctcc ggtaagggta
      541 aagtgttggg gaataccgtt ttcaatgtca gatttatcaa ccacaaatgc agaactgtag
      601 agatgtgagt tggacaacca tttgcggatt tccagttctt tgcctacggt catggttcgt
      661 tcagtaccta caattttgag ttcgataatg cggcctgagg ctccccgttt ttccggaatt
      721 aaatcaataa tttgcccaaa gtggatattc gagcggcgcg ccagcagttc ggcgacttct
      781 tcctgggtat attccacttt ccagcggtaa aaatcagttg tttcctggtc gtagttgttt
      841 agtacctgag ccagtacatt tttatcggtt gtgttgcaga atgcctccgg cgaccggcgg
      901 atccactcct cagcatttgt ttcgtcggtc aaatccagct caaaacccaa cggaacatcg
      961 ttgttgtcaa caaccggtat taaataggag tgatgttccg gagcccagca attctcgaat
     1021 gcttccgaaa ttccgccaca tgacttgctg aagcgggcat cgcaaatctt cttgtcagcc
     1081 atcagtacct cgccgcgggt ggcttcaatg gcttttgcaa ccgtttcagt tgaggcgcgt
     1141 gtaattccct ggtagcgctg gcaatggtca tcggcgcaaa cgtcgtagcg cttgtgcgca
     1201 tcgcgttcgt accacctgat aatccggtcg gcttcgcgaa ttaaagatat gttttgatct
     1261 gtatcttttt tcttgttcat gatggggttc agcaaccaac tccgcgaaat gacagcatgc
     1321 gcttttagca attcttcgga ggctgtggcg ctcatctcgc tcgaaatgac gctggtaagg
     1381 tagtcttcta cttttatttg gttgattgcc gtgagttttc cgccttccac aatgaatttt
     1441 aatgaacctt tgaagcgttg gttttcccgt cgttgccagt gaaaattaat accaattacc
     1501 acatctttta tgtcgatgga gcaatcgtcc gacatgggct caaatgagag atcctccgat
     1561 aggttaccat caaataatat gtcgcctttt cggtataccg caaccttctt tcctgtgtag
     1621 aaccgatcgt ttgatacttt aaaatatcca ttcagtacga agcgaatttc tgaggccgat
     1681 aatatgccaa cctgaataat tggttctttt tttttcatga tttctgacgg ttatttacct
     1741 acaatattct tataaataga aagctcaaac tttgtttttt caagttcgct ttgcaaatct
     1801 ttaatttgtt gttggagttc ggtttcgcgc tgtgttgtgt agtcaacctg aagtttttcg
     1861 cccagttcag ccacaaaatt atgtttcagg gcaaggctta ttttccacaa aatgcccagt
     1921 tgcaacgact ggctgtcgag atactgctgg actgtggagc ccgctacgga tatccggcgt
     1981 gccaattccg ctttatttac accgtggagt ttaaagtaat cccgtagcat attgccgttg
     2041 tgcggatatg cattggttga ttgtagttta tcgtccataa ctttgtcttt ttatataata
     2101 tggtgcaaat atatagaatt attgatataa aatatataat aatcgaagtt tagtacttat
     2161 ttgtattagt tttttatact attattgtag ttttatactt tgttgtatta gtttctaaaa
     2221 caatagtctt agtttatata tttaaaattt aagctca
//
LOCUS       DATDNM010000187         2165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1091350, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000187 DATDNM010000000
VERSION     DATDNM010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1091350"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..463)
                     /locus_tag="VI413_03195"
     CDS             complement(<1..463)
                     /locus_tag="VI413_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEY6913658.1"
                     /translation="MLADLQTPVGIYLKIRDLYTNSVLLESSDYHGVENSYSYIGFCP
                     IGGISVNQFMIKEEYPDGTKLETPVTGKLTVAERFDAFLKSVDLVKNDNPVGVNGLFG
                     YSSYESVQYFEDVKLKARETVPGSMPGLHYVLFKYIIAVNHFNNELTIIENL"
     gene            complement(620..1882)
                     /gene="trpB"
                     /locus_tag="VI413_03200"
     CDS             complement(620..1882)
                     /gene="trpB"
                     /locus_tag="VI413_03200"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008158570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEY6913659.1"
                     /translation="MNNIDNLGDETNLSSPSEARDSSNSPLGVGGIDNNGYYGEFGGA
                     YIPEILHGTVERLKEAYFAIKDDASFKAEYYDLLKNYVGRPSPLYFAKRLSAEYGTNI
                     YLKREDLNHTGAHKINNALGQILLAKRMGKTRIIAETGAGQHGVATATACALMGLECI
                     VFMGKTDVERQFLNVQKMRMLGATVEPVTSGNWTLKDATNEAIRYWCSNPDSFYIIGS
                     TVGPHPYPDMVGFFQSVISEEIKWQLQEQVGRDYPDYLMACVGGGSNAMGTYYHYIND
                     ERVKIISAEAGGLGAETGETAATISVGTVGIIHGFRTLLMQDEDGQITEPYSISAGLD
                     YPGIGPAHAFFAKIGRTKVHAINDDEALEAAFELTRLEGIIPAIESAHALALLKKEKD
                     TFKPDDIVVLTVSGRGDKDMDTYVKHFK"
BASE COUNT          603 a          505 c          395 g          662 t
ORIGIN      
        1 gcagattctc aatgatggta agttcattat tgaaatgatt taccgcaatt atgtatttaa
       61 acaatacata atgcaagccc ggcatacttc ccggaacggt ttcgcgcgcc ttgagtttca
      121 cgtcttcgaa atactgcacc gactcgtacg acgaatagcc gaacagaccg ttcacaccaa
      181 ccggattgtc gttctttacc aaatcaaccg acttcagaaa agcgtcgaaa cgctcagcca
      241 cagtcagttt gccagtaacc ggagtttcaa gttttgtccc atcaggatat tcttctttta
      301 tcataaactg attcaccgaa attccaccaa tcggacaaaa accgatatac gaataactgt
      361 tttcaacgcc atgataatcg gaactttcca acaacaccga gttggtatat aaatcgcgta
      421 ttttgagata aattcctacc ggcgtctgca aatcagccag catttttttt gaatgaacgt
      481 ataattttaa agaaccccca tcccctaagg gggcgttgga gttagttttg tctcctaaat
      541 ttatattttg actttccata caaataaatt aaataatcag tactaatatt tcttcctccc
      601 ctttaggggt tgggggtagt tatttaaaat gcttcacata agtatccata tccttgtctc
      661 cccttcccga aactgtgaga accacaatat cgtctggttt aaaagtgtct ttttcttttt
      721 tcaaaagcgc cagtgcgtgg gctgattcaa tggccggaat aattccctcc aagcgggtca
      781 gctcaaaggc agcttctaac gcttcatcat cattaatggc atgaaccttc gttcgaccaa
      841 tttttgcaaa gaatgcatgt gccggtccaa ttccgggata atccaatccg gcagaaatcg
      901 agtatggttc ggtaatctgt ccatcttcgt cctgcatcaa caatgtccgg aacccgtgga
      961 taataccaac tgttccaacg cttattgtag ctgcagtctc tccggtttca gcgcccaatc
     1021 cacctgcttc tgccgagatg attttgacgc gctcatcatt gatataatga taataagttc
     1081 ccatagcgtt acttccacca ccgacacaag ccatcaaata atcaggataa tcgcggccca
     1141 cctgttcctg caattgccat ttgatttcct cgctaatgac agattggaaa aatccaacca
     1201 tatcaggata aggatgtggt ccaacggtag aaccaataat ataaaacgaa tccggatttg
     1261 agcaccagta tcggatagct tcgttggtag catctttcaa tgtccagttt ccgctggtta
     1321 ccggttcaac agttgcgccc aacatgcgca ttttttgtac gttcagaaac tggcgttcca
     1381 catctgtttt gcccataaac acaatacatt ccaggcccat caatgcacaa gcagtagcag
     1441 tagccacgcc gtgttgtcct gcacctgttt cagcaatgat tcgcgttttg cccatacgtt
     1501 ttgccagcaa aatttgtccc aatgcattgt tgattttatg cgcaccggtg tggttcaaat
     1561 cttcacgttt caagtaaata ttggtgccgt attcagccga caagcgtttt gcaaaataca
     1621 gtggcgacgg acgtccaaca tagtttttca gtaaatcgta atattcagct ttgaatgaag
     1681 catcatcttt tattgcaaaa taagcttctt taagtcgctc cactgttcca tgcagaattt
     1741 cggggatata cgctccgcca aattcgccgt aatagccgtt gttgtcaatg cccccaaccc
     1801 ctaaagggga gttagaagaa tccctagcct ctgaagggga acttaagtta gtttcgtctc
     1861 ctaaattatc aatattattc atatctatat atttctttta taattaccag tagtatttca
     1921 ttctcccctt taggggcggg ggtagtataa caaaaaaggc ttatcgtgag tccgacaagc
     1981 ctttttgtaa tatcttttat tttcgacaat atacataggt gttacatctc acgattagct
     2041 aatctgcgag tgccaccacc aaaatttgtt tattgtcaaa atcgtgttca tttctttttg
     2101 atttattttc gggtgcaaag atgataaatt tattttaatt gagcaagaaa aatatcattt
     2161 ttccc
//
LOCUS       DATDNM010000188         6014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1839771, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000188 DATDNM010000000
VERSION     DATDNM010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6014
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1839771"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VI413_03205"
     CDS             <1..326
                     /locus_tag="VI413_03205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016269124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913660.1"
                     /translation="PVIASRVQERAYGRSLANAYNAYNYSTERIADGGFVRLKEVSLS
                     YNVPKKWFGSLNISTLQLKLQATNLCLLYSDRKLNGQDPEFFNTGGVASPMPKQFTFT
                     LRLGI"
     gene            388..1980
                     /locus_tag="VI413_03210"
     CDS             388..1980
                     /locus_tag="VI413_03210"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913661.1"
                     /translation="MNKINKILICLLLVLLTTSCNDFLSTLPDNRTQMDNATKISQLL
                     VSAYPSANYATLAELSSDNFVDNNSILPVILSGFEQMDDQIYAWEDATTSTQEDSPSF
                     VWGKCYSAIAAANHALAAIEQLQLADSALDLRAQKGEALICRAYGHFILVNMFSQAYK
                     DATASTLDMGIPYVTEPETVVQKTYTRETVASVYQKIQKDLEDGLGLISDQNYKIPKY
                     HFNRKAVCAFAARFFLYKRDYQKVLLYANEVLGADPTTLMRDFTGYYGSSSEIGYDYI
                     NVELPCNLLIMPTSSLFNRNFGTRYGHNGEAMFGCLYGSGPTWSGSLPCFDGKLYIAV
                     KQDYGVFYPKCDEMFEYTDKVAGIGYTHVTRAEFTVEETLLCRAEALVYLNRIPEAVA
                     DLQVWNKSHLAPGVLTESVIRNFYKSTNPLFVKKLNTSKMSSGFIVSAAQEPFIHCIL
                     HFRRIETIFDGYRWFDLKRYGIEITHAIGRSRVETLTYNDPRRAIQLPQEVISAGMVP
                     NTRVVGATPSGTYSLFQKPTTN"
     gene            2014..2940
                     /locus_tag="VI413_03215"
     CDS             2014..2940
                     /locus_tag="VI413_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005928436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative zinc-binding metallopeptidase"
                     /protein_id="HEY6913662.1"
                     /translation="MKEILGKILIICLFVMSLYSCSQNDELGASVFDTTDTLDVKSAS
                     YKFDSLLREEYLKPYNLDFRYRLQDVGSDLDYNLVPVSFVKAQQMARLVKYLWFDVYG
                     TVVSPDFLKQNGPRIIHLIGSPAYNPISGTILLGTAEGGIKVTLYRCNDLDPTNVDML
                     NEYYFKTMHHEFAHILHQKRNYPVDFNQLSKGRYNPIGWQYYTDSQAASMGFVSPYAG
                     SQIQEDFVEIIANYLVKSDADWNNILLMASQPGKDYQGETLADDGVDGKALILKKLDI
                     AGKWLQNSWNIDIVKLRTEIIKREAHINEILN"
     gene            2924..4210
                     /locus_tag="VI413_03220"
     CDS             2924..4210
                     /locus_tag="VI413_03220"
                     /inference="COORDINATES: protein motif:HMM:NF025500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4302 domain-containing protein"
                     /protein_id="HEY6913663.1"
                     /translation="MKFLINDTMQKINYIVLCLVMLLLGSCAKNEADIFSASPAERMN
                     RALKDDFAALISAPNGWAMEYFATPTSPGYTLLVKFDTSGKATFAAKSELTKNKAYET
                     DSCLFEMIGDNGPVLTFNTYNTVLHRFSNPENPDGYGLEGDYEFVVISKSADQITLKG
                     KKMGTIILLNKIPVDISWAQYVEGLSAMDTLLFVNNSNSLKMKIGTSSYLFSNGSGHV
                     FSIKQGVNTTIEAPFIVTRTGIRFQFVQDIGGVKFHTLKLNDDKSALVSIDNPDLKLV
                     GVEDLAAFFIGNIKVWEFVPTELSPNVKAVYDQIVQSCITNYNATDVKLAIKYYTTRN
                     SFELNLTYTTSQVINDGNLDMTLNATGKNSLSLLCKVTGDNSGLSFYNDVAGFKEMSA
                     LISTGFVLSTNSMINPQKIKFTKKTDANTWFTVVPQ"
     gene            complement(4251..4943)
                     /locus_tag="VI413_03225"
     CDS             complement(4251..4943)
                     /locus_tag="VI413_03225"
                     /inference="COORDINATES: protein motif:HMM:TIGR02254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YjjG family noncanonical pyrimidine
                     nucleotidase"
                     /protein_id="HEY6913664.1"
                     /translation="MYKFVFIDLDDTIWDFHANAKSTLHEIYEIRRLNRYFDSFEQYF
                     GIYAKRNLELWDLYGRGEITKDSLTLERFLHPLLHVGINDPELALNIGREYLEMLPSR
                     TELVPFAKELLDYLYLKYPLTIVSNGFIEVQYKKLRSANLEHYFSHVVLSEEAKALKP
                     DKRIYEHALNLNKAKANETIMIGDSYEADIIGAQNAGIDQVYFNPELNLTNNNLECTF
                     KINRLEELLPIL"
     gene            complement(5285..>6014)
                     /locus_tag="VI413_03230"
     CDS             complement(5285..>6014)
                     /locus_tag="VI413_03230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913665.1"
                     /translation="GYFETMNQIEQNIEKIKSTENTISMQPVGQELDDDTRTKINEDL
                     TYLNDMLQSNKEELARLKAKLKKSAFRSSELDRTIARLTKSLEEETTKAALLQEELSK
                     KDSLIVQLNNVVSEKEKDIEDLSTENKTKDTKIKEQDETIHTAWYVFGTRNELKEQKI
                     ITSDGLFSPQRVLQRDFNKNYFVRIDARNTKSIPLYSTRAKILTNHPKSSYTLEKENG
                     NFVLLIVDPNEFWSVSKYLVIEVD"
BASE COUNT         1740 a         1048 c         1261 g         1965 t
ORIGIN      
        1 ttccggttat cgctagtcgt gtgcaggagc gagcctatgg aagatcattg gcaaatgctt
       61 ataatgcgta taattactcg acagaaagaa ttgccgatgg aggttttgtc cggttgaagg
      121 aggtctcact gtcatataat gttccaaaaa aatggtttgg ttcgttgaat atcagtacgc
      181 ttcagcttaa attgcaggca actaatttgt gtctcttata ttccgataga aaattaaacg
      241 ggcaggatcc ggaattcttt aatacaggtg gtgtggcatc gccaatgcct aagcaattta
      301 cttttacgtt gaggctggga atttgaaatg tagttcgtag tttatagtca gtagttcaca
      361 attaatagtt ataagatatt tcgcgagatg aataagataa ataaaatatt aatttgcttg
      421 ttgttggttt tgttgacaac ttcttgcaac gattttttga gtacgttgcc cgacaatcgt
      481 acgcaaatgg ataatgctac taaaatttcg caattattgg tttcggctta tccttcggct
      541 aattatgcta cgttggccga gctaagttca gataattttg tggataacaa ctccatactt
      601 cctgttatcc tgtcgggttt tgagcaaatg gatgatcaga tttatgcctg ggaggatgct
      661 acaacttcta ctcaagagga tagcccttca tttgtatggg gaaaatgtta ctcggcgatt
      721 gctgctgcca accatgcttt ggcagctatt gaacaattgc aacttgctga ttctgcattg
      781 gatctgaggg ctcaaaaggg tgaagcattg atttgtaggg cttatggtca ttttattctg
      841 gtgaatatgt tttcgcaggc ttataaagac gctactgcca gcacattgga tatgggaatt
      901 ccctatgtaa cagaacctga aacggttgtt cagaaaactt atacgcgtga aactgtagct
      961 tcggtgtatc agaaaattca aaaagacctg gaagatggtt taggtttaat atccgatcag
     1021 aattataaaa ttcctaaata ccactttaac cgaaaagctg tttgtgcatt tgctgcccgc
     1081 ttctttttgt ataaacgtga ttatcaaaaa gttttattgt atgcaaatga ggttttgggt
     1141 gcagatccga ctaccttgat gagagatttt acaggttatt atggtagctc gtctgaaatc
     1201 gggtatgatt atataaatgt tgaactacca tgtaatttat tgattatgcc aacgtcatct
     1261 ctgtttaacc gtaatttcgg aacacgttat ggacataatg gagaggctat gtttggttgt
     1321 ctgtatggat cggggcctac ctggtcgggc tcgcttccgt gctttgatgg taaattgtat
     1381 attgcagtaa aacaggatta tggcgttttt tatcccaagt gcgacgaaat gtttgaatat
     1441 accgataaag tggcaggcat tggctacacg catgtaaccc gggctgagtt cacggtggaa
     1501 gaaacattgc tttgcagagc cgaagcgttg gtttatctga atcggattcc agaggcggtg
     1561 gctgaccttc aggtttggaa caaatcgcat ttagctccag gtgtgttaac ggagagtgta
     1621 attagaaact tttacaaatc tactaatccg ctgtttgtga aaaaactaaa tacgagtaaa
     1681 atgagctcag ggttcattgt ttctgctgcg caggaaccat ttattcactg tattcttcac
     1741 ttccgacgca tcgaaacgat tttcgatggc taccgttggt tcgatttaaa acggtatgga
     1801 attgagatca cgcatgcaat tggccgaagc cgtgttgaaa ctctcacgta taacgatccg
     1861 agacgtgcta ttcagttgcc tcaggaagtt atcagtgcag gaatggtgcc gaatacccgt
     1921 gttgtaggtg caaccccaag tggtacttat tcgttgtttc aaaaacctac gactaactaa
     1981 tgtatcaaga agaaactatt ttttattaga cttatgaaag aaatattggg taaaatattg
     2041 attatatgct tattcgtaat gagtctgtac tcttgttcgc aaaatgatga acttggtgca
     2101 agtgtttttg atacaacgga tacattggat gtgaaatcag ccagttataa gttcgactct
     2161 ttgcttcgcg aagaatacct gaaaccctat aacctggatt tcagatacag gttgcaggat
     2221 gtaggatctg atctggatta caatcttgtt cctgtttctt ttgtgaaagc acagcaaatg
     2281 gccaggctgg ttaagtattt atggtttgat gtatatggaa cggtagtaag tcctgatttt
     2341 ttgaaacaaa acggaccacg tattatacat ttgattggtt cgccggctta taatccgatt
     2401 tcaggtacca ttttgctggg aactgctgaa ggcggtataa aggtaacgtt gtatcgttgc
     2461 aatgacttag atccaacgaa cgtagatatg ctgaatgagt attatttcaa gaccatgcat
     2521 catgagtttg cgcacattct gcatcaaaag cggaactatc ctgttgattt caatcaattg
     2581 tccaagggac gttataaccc tattggttgg caatattata ccgattccca ggcggcatcc
     2641 atgggttttg tttcacccta tgccggaagt cagattcagg aagactttgt ggagataatt
     2701 gctaattatc tggtgaaaag cgatgccgat tggaataata ttttacttat ggcatcacag
     2761 ccgggtaaag attatcaggg agaaacatta gctgacgatg gtgttgatgg taaagctctt
     2821 attcttaaaa aactggatat tgccggtaaa tggcttcaaa attcgtggaa tatagatatt
     2881 gtaaaattac gcaccgaaat aattaagcgc gaagcacata tcaatgaaat tcttaattaa
     2941 tgatactatg caaaaaatca attatatagt tctttgtttg gttatgctgc tgctcggcag
     3001 ttgcgcaaag aatgaagctg atattttttc tgcatcgcct gctgaacgaa tgaatcgggc
     3061 tctgaaagac gattttgcag cgcttattag tgctcccaat gggtgggcaa tggagtattt
     3121 tgcgaccccc acaagtcccg gctatacgtt gctggtgaaa tttgatactt cgggaaaagc
     3181 aacatttgca gctaaaagcg agttgacaaa aaataaagca tacgaaacgg atagttgtct
     3241 ctttgaaatg attggcgata atggaccagt tttgaccttt aatacttaca acaccgtttt
     3301 gcaccgtttt tccaatcctg aaaatccgga tggatatggt ttggaaggag attatgaatt
     3361 tgtggttata agtaaaagtg ctgatcaaat cacgttaaag gggaagaaga tgggtacaat
     3421 tattttatta aataagattc cggttgatat ttcctgggcg caatatgttg aaggattatc
     3481 tgcaatggat actcttttat ttgtgaataa ctccaattcc ctaaaaatga aaatcgggac
     3541 ttccagttat ttattttcaa atggttccgg tcatgttttt agcataaagc aaggtgtaaa
     3601 tacaaccatt gaagcccctt ttattgtgac cagaacaggt attcggtttc agttcgttca
     3661 ggatattgga ggggtgaaat tccatactct gaagcttaat gacgataaat cagcattagt
     3721 gagtattgac aatccggatt taaaacttgt aggcgtagaa gatcttgctg cattttttat
     3781 tggtaacatc aaagtgtggg agtttgtacc aacggaattg agtccgaatg tgaaagctgt
     3841 ttatgatcag attgttcaat cttgcataac aaactataat gccaccgatg taaaactagc
     3901 catcaagtat tatacaaccc ggaattcttt tgagttgaat ctcacttata caacaagtca
     3961 ggtaataaat gacgggaatc ttgatatgac tttaaatgct accggaaaaa actcactttc
     4021 gttactgtgt aaagttaccg gagataattc tggtctgagt ttctataatg atgtagcagg
     4081 gtttaaagaa atgtccgctt tgatttctac cgggtttgtg ctgagtacga attcaatgat
     4141 taacccgcaa aaaatcaaat ttacaaagaa gacagatgca aatacatggt ttacagtagt
     4201 cccacaatag attgaatttt aatttctaaa gatttattgt tggaaaaaag ttacagtatt
     4261 ggtagcagct cttctaatct gtttattttg aatgtgcatt ctaaattatt gttcgtcagg
     4321 tttaattcgg ggttgaaata cacctggtcg atgccggcat tttgagctcc tattatgtct
     4381 gcttcatagc tgtcaccaat cataatagtt tcattcgctt ttgccttgtt tagattcaat
     4441 gcatgttcat agatgcgctt gtcgggtttc agggctttgg cttcttctga gagtactaca
     4501 tgagaaaaat aatgttccag attggcactt cgcaattttt tgtactgaac ttcaataaac
     4561 ccattcgaga ctattgttag tgggtacttt agatagagat aatccagcaa ttctttcgca
     4621 aatggaacca gttcggtacg actggggagc atctccaggt attcgcgacc gatattcagt
     4681 gcaagttccg ggtcgttgat accgacatgt aaaagcgggt ggaggaacct ctctaacgtc
     4741 aaactatctt tagttatttc gcccctgcca tacaaatccc aaagttccag gttccgtttg
     4801 gcataaatcc caaaatattg ctcaaaacta tcaaaatacc gatttagcct tcttatttcg
     4861 tatatttcgt gaagtgtgga ttttgcattg gcatgaaaat cccaaatggt atcatccaga
     4921 tcgataaaaa cgaatttgta cataggcccc aagcccctaa aggggaaata attaatttga
     4981 tttgaaaatg tctaaaaaga ttatccacaa agtatccaaa taagtgaaat tgttgttttt
     5041 taagttggat ttcgcgattt ttaatcgcgt atatcagtat ttgacagcga ttataaatcg
     5101 caaaacacat ttcaaatctc gttaattgag aatacaataa tgtaggacaa tatatggata
     5161 aacaatattt gaaatattaa aaatgcgttc ccgatatctc agaaacgcat tgtataatat
     5221 caaaacccct taggaacggc attaattcta tcccaatttc tcccacatgt gagagagtag
     5281 gggtttagtc aacctcaata accagatatt tgctcacgct ccagaattcg ttcggatcaa
     5341 caatcagtaa aacgaaatta ccgttttctt tttccaatgt gtacgaagat tttgggtgat
     5401 tcgtcaatat tttagcgcgt gtggaataca atggaattga ttttgtgttt cgggcatcta
     5461 tacgtacaaa gtaattttta ttgaagtcac gttggagaac acgctgtggg ctgaataatc
     5521 catcggaagt aatgattttt tgctctttca actcatttct tgtaccaaaa acgtaccacg
     5581 ctgtgtgaat tgtttcgtcc tgctctttga ttttggtgtc tttcgttttg ttttctgtcg
     5641 acaaatcttc aatgtctttt tctttttccg acacaacatt gtttagctga actatcaatg
     5701 aatctttttt cgataattct tcttgcaaaa gtgctgcttt tgtggtttct tcttccaatg
     5761 attttgtcaa cctggcaatt gttctgtcaa gttcagaaga cctgaatgca ctttttttaa
     5821 gcttagcttt caagcgtgcg agttcttctt tattcgactg cagcatatca ttcagataag
     5881 tcagatcttc attgattttt gtgcgggtat catcgtccag ttcctgtcct acaggttgca
     5941 tggagatagt attttcagta cttttaatct tctcaatgtt ttgctcaatc tgattcattg
     6001 tctcaaaata acca
//
LOCUS       DATDNM010000189         3575 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_24364, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000189 DATDNM010000000
VERSION     DATDNM010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24364"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1432)
                     /locus_tag="VI413_03235"
     CDS             complement(<1..1432)
                     /locus_tag="VI413_03235"
                     /inference="COORDINATES: protein motif:HMM:NF044821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913666.1"
                     /translation="MKKRIVTIVFLLSLLSWSGSAQVAMGKWRTHFAYNSVSQIAQSD
                     NKIYAVSEGALFSVDKQDGEGGIEFYSKISGLNGSNISRIEFDPTSKQLLIIYTNGNI
                     DLLTTGGVINIPDLYNKQMSSSKEVNHIQFYQDKAYLSCNFGIIVLNMQKKEVADTYY
                     IGPNASEVKVLSTVVHNGTIYALTPNTIFKASVSEPNLVNYAFWSTVNALPGIGDLQS
                     ISSFSDQLILQRAGKLYKQGSDNLWDPFLSNINVSNFNVTNESLNVFDGSAAYLVDKQ
                     FNVKTVSNIGILSDAEYDKTNNTYWFAANALGVISYKQNGSEEPTLSYYKPEGPAVNI
                     PSNMIFSGKKLFVVSGGHTSIFSDQPGNVMMYENNVWTNIYSSSIESKTGIICRDLMS
                     IAVDSSDNKHFFATSARSGLYEFNNNEFSTYHNFTNSTIENIMNDYQYQVLGGSVFDK
                     SGNLWLTNCFVRDIVKVMLKDGSWTQL"
     gene            complement(1566..2147)
                     /locus_tag="VI413_03240"
     CDS             complement(1566..2147)
                     /locus_tag="VI413_03240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018965591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009143 - nucleoside triphosphate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP diphosphatase"
                     /protein_id="HEY6913667.1"
                     /translation="MKKLVFATNNAHKLSEVRAILEPEFKIISLAELNCNDDIPETAE
                     TLEGNALIKAQYIHSKFGLDCFADDTGLEIDALGGEPGVYSARYAGDANCAHENMCKV
                     LEKLGDNPKRTACFRTVIALIHGNKTNYFEGKIDGSIAIQPRGDSGFGYDPIFVPEGY
                     MVSFAQLSSEDKNQISHRALAIKKLVEHLQKSE"
     gene            complement(2227..3294)
                     /locus_tag="VI413_03245"
     CDS             complement(2227..3294)
                     /locus_tag="VI413_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016277277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR04133 family radical SAM/SPASM protein"
                     /protein_id="HEY6913668.1"
                     /translation="MNLKRKIILSLFQQHKRNQSKLHELTYLFWECTLRCNLNCIHCG
                     SDCTKEAMSPDMPLEDFLKVLDNIVPHVNPHKTMIVLTGGEPLMRKDLEKCGEEIYKR
                     GFPWGIVTNGFGLTPTRFTDLLKAGLRSITISLDGLNPETHDWFRGRSGSWEKAIDAI
                     SKVAATPDLMYDVVTCVNKRNMDDLEAIRNLFISKGVKRWRLFTVFPKGRAKENPLLQ
                     LSKTDFVRLMEFIKQTRKDGEIKASYGCEGFLGDYELEVRDNPFFCQAGIHVGSVLVD
                     GSISACPSLRADYIQGNIYTDNFWTVWNERYKNMRDRSWTRTGKCATCNSYKYCEGNG
                     LHLRDEKTGELLCCHMEMLQE"
     gene            complement(3301..>3575)
                     /locus_tag="VI413_03250"
     CDS             complement(3301..>3575)
                     /locus_tag="VI413_03250"
                     /inference="COORDINATES: protein motif:HMM:TIGR04134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM-associated putative lipoprotein"
                     /protein_id="HEY6913669.1"
                     /translation="ANDSTVTHIDTLAIKETDSAGKYDITMQQFPLEDITFEVKIEDV
                     DGSANGGDFNSQKKDVSFKFSDLSKGNNSWYLGKGVKTQDFKLKKK"
BASE COUNT         1010 a          708 c          654 g         1203 t
ORIGIN      
        1 atagttgagt ccaacttcca tctttcaaca ttactttaac tatatctcta acaaaacaat
       61 ttgttaacca aagatttcct gatttatcaa aaacactacc tcctaaaacc tggtattgat
      121 aatcattcat tatattttca attgtgctgt ttgtaaagtt atggtatgtg ctaaattcgt
      181 tgttgttgaa ttcgtataaa ccacttcttg cacttgttgc aaagaaatgt ttattatcgg
      241 aagagtcaac agcaattgac attaaatccc tacaaataat accagtttta gactcaattg
      301 aactggaata aatatttgtc caaacgttgt tctcatacat cattacattt ccaggttggt
      361 cgctaaatat tgacgtatga ccacctgaaa caacaaataa ttttttccct gaaaatatca
      421 tatttgaagg tatatttact gcaggacctt ccggtttgta atagcttaaa gttggttctt
      481 ctgaaccatt ttgtttgtat gatattactc ctaatgcgtt ggctgcaaac caataggtgt
      541 tatttgtctt gtcatactca gcatcagaaa gaatacctat attactgact gtttttacat
      601 tgaattgctt atccaccaga tatgctgcgc taccatcaaa aacgttcagg ctttcattcg
      661 taacattgaa attagaaaca ttaatatttg aaagaaaagg atcccataag ttatcacttc
      721 cttgtttgta aagctttcct gctctttgta aaattaattg gtctgaaaat gaagaaatgg
      781 attgaaggtc tccgatgccg ggcaatgcgt ttactgtgga ccaaaatgca taatttacca
      841 gattaggttc tgaaacagaa gctttaaaaa tggtgtttgg ggttagagca taaattgttc
      901 cgttgtgaac tactgtgctc agtactttta cttcggacgc atttggtcct atataatagg
      961 tgtcggcaac ttcctttttt tgcatattca gaacaataat cccaaaatta cacgacaaat
     1021 aagctttgtc ctgatagaat tgaatgtgat ttacttcttt gctggaactc atttgcttat
     1081 tatacaaatc gggaatgttg attactccgc ccgttgtcaa caaatctata ttaccatttg
     1141 tgtaaatgat taacaactgt ttgcttgtag ggtcaaattc aattcgagag atattggatc
     1201 catttaaacc gctaatttta ctataaaatt ctattccgcc ttcaccatct tgtttgtcga
     1261 ctgaaaatag cgctccttca cttactgcat aaattttatt gtctgattga gcaatctggg
     1321 atacactatt atatgcaaag tgtgtacgcc atttgcccat ggccacttgc gcagaacctg
     1381 accacgaaag caggctaagt aaaaaaacga ttgtaacgat tctctttttc atatataatt
     1441 ttatgctcat tgacgatgac gatattctat tttaaaatct atccaaatta ataaaactca
     1501 aatacttcag ttttatttta taaaaaggat acataatgtg aaatttccag ggttctcgtg
     1561 ttttgttatt ctgatttctg caaatgctcc actagttttt ttatagccag agccctgtga
     1621 ctgatctgat ttttatcttc agagctaagc tgagcaaaac tcaccatata tccttctgga
     1681 acaaaaatag gatcgtatcc aaaaccactg tctccccggg gttgaatagc aatactacca
     1741 tcaattttcc cttcgaaata atttgttttg tttccgtgga taagcgcaat tactgttctg
     1801 aaacaagctg ttcgtttcgg attgtctcca agcttttcca ataccttgca catgttctca
     1861 tgcgcgcaat ttgcatcgcc ggcatatcgg gcagaataga cgccaggttc tcctcccaat
     1921 gcatctattt ccaagccggt atcatcggca aagcaatcca agccaaattt ggagtggata
     1981 tattgggctt taattaaagc attaccttca agtgtttctg ctgtttcggg aatgtcgtca
     2041 ttacaattta attcagctaa actgatgatt ttaaactcgg gttcgagaat ggctcttact
     2101 tcggacaatt tatgcgcatt attggtcgca aataccaatt ttttcatatc taaaaacggt
     2161 gtaaaaaact actgcctgca aagataatta ttttcggcaa taaataggaa tgaaaagtgt
     2221 tttggtttat tcttgaagca tttccatgtg gcagcaaagt aattcgccgg ttttttcgtc
     2281 gcgaagatgg aggccgttgc cttcgcagta tttgtaggaa ttgcaggtgg cacatttgcc
     2341 tgtacgtgtc caagaacggt cgcgcatgtt tttatagcgc tcgttccaga ctgtccaaaa
     2401 gttgtcagtg tagatattcc cctggatata atcggctctc aaactgggac aagcacttat
     2461 ggaaccatca accagtaccg agccaacatg aattcctgcc tggcagaaga aaggattgtc
     2521 acggacttca agctcgtagt cacccagaaa gccttcacag ccataagatg cttttatttc
     2581 cccatctttt ctggtttgtt taataaattc cattaatcgg acaaagtcag tttttgaaag
     2641 ttgaagcagt ggattttctt tggcacggcc ttttgggaaa acggtaaaca atcgccagcg
     2701 ttttacgcct ttgcttatga ataaattgcg tatcgcttcc aaatcatcca tgtttcgttt
     2761 gtttacgcag gttaccacat cgtacattaa gtccggtgtg gcagcaactt tggatatagc
     2821 atcgatggct ttttcccacg aaccacttcg tccacggaac caatcgtgag tttccggatt
     2881 aaggccgtca aggctgatgg ttattgagcg taagccggct tttagtaaat ctgtgaaccg
     2941 ggtaggagtg agtccgaaac cattggtaac gatgccccat ggaaagcctc gtttatagat
     3001 ttcttcaccg catttttcaa gatcttttcg cattaaaggt tcgccaccgg taagaacaat
     3061 cattgtttta tgcgggttaa catgcgggac gatattgtca agcactttca gaaaatcttc
     3121 tagtggcatg tcgggcgaca tggcttcttt agtacaatcg cttccgcaat ggatacagtt
     3181 cagattacaa cggagggtgc attcccaaaa aaggtaagtc agttcgtgca gtttgctttg
     3241 attccttttg tgctgctgaa aaagcgagag tataattttc ctttttagat tcacagggtt
     3301 ttatttcttt ttgagtttga aatcttgtgt ttttacacct tttcccagat accagctgtt
     3361 gtttccttta ctaagatctg agaatttaaa tgatacatct tttttctggg aattgaaatc
     3421 gcctccattg gcgcttccat ctacgtcttc aattttaacc tcaaacgtaa tatcttccaa
     3481 cgggaattgt tgcattgtaa tatcatattt tcctgcactg tctgtctctt taattgccaa
     3541 tgtgtcaata tgagtgacgg ttgaatcatt ggcta
//
LOCUS       DATDNM010000190         3229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_24483, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000190 DATDNM010000000
VERSION     DATDNM010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24483"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1138)
                     /locus_tag="VI413_03255"
     CDS             complement(<1..1138)
                     /locus_tag="VI413_03255"
                     /inference="COORDINATES: protein motif:HMM:NF012516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004650 - polygalacturonase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 28 protein"
                     /protein_id="HEY6913670.1"
                     /translation="MRTSFFTGLFLLMVTSAIGQSKTINIIDLGARSSNTTENTAIIQ
                     KAIDEVSAAGGGTVVIPPGRFVTGVLTMKSNVNLHLEKYAVLAGSTRRTDYGPSSQAS
                     ALLIADKATNISITGKGMIDGQGEALLKDIYVMLHAGTLQDKEWQTENPWHQVRPEEE
                     NRPKIINFNNCDKVTIKGITLRNALCWVQRYNKCSNILMDSIEVESNVFWNNDGVDFV
                     DCKDVKLTNSFFNADDDGICLKSEDRNSRCENIYVADCVVRSSANAVKLGTASWGGFK
                     NITIKDIKVFDTFRSAIAIEAVDGGVLENIDVRNIKATNTGNAILVRLGHRNKDSVVS
                     LLRNVYIGNMEVEVPKTKPDIGYNMEGPAKRYPHNVFPSSVTGIP"
     gene            complement(1175..2113)
                     /locus_tag="VI413_03260"
     CDS             complement(1175..2113)
                     /locus_tag="VI413_03260"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY6913671.1"
                     /translation="MKMNAKKFFLLLMLFLCNSTGLLVVAQSVVIDKTAYRFFIVSDI
                     GQNGYYKQKEVANTLGNMAQSIRPKLIVTSGDTFHYNGVRSTSDPLWTSNFESIYTNP
                     WLLVDWFPILGNHEYRGNTQAVIDYSRISRRWNMPARYYTFAVKIDSVNSLRFVMIDT
                     PPFMSEYKKLPDQYPDILKQDTKQQLQWLDSVLLASTEKWKIVIGHHPVYSTDSLRGK
                     NTELLDQLDPVLTKHKVDFYFSGHIHIAQHIQKNNINYVVSPSGSLGVNTGTFPGAKF
                     VSHSEGFTICTVKKDYFEFIFVDENGKELYRYKKSK"
     gene            complement(2123..>3229)
                     /locus_tag="VI413_03265"
     CDS             complement(2123..>3229)
                     /locus_tag="VI413_03265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913672.1"
                     /translation="APHHDDIELAYFPLLHHLVRSEHNDNHFVYCTSGFTSVTNEYIN
                     SNLIALRNLITSGRIEKYLDSKHLFEQDGFWDDITGTLNAIANKNSEEQSVYIACRLA
                     RHFVRWLHVKSLKELLPTLNETIQHLSTIDPGTKETEIAQVIKGWTREFEAELVWEHF
                     GIGLDHVSHLGLQFYTGDIFVEYPDPERDVKPILDLLEKVRPNIVSLALDPEGSGPDT
                     HFKTLIAISNALEKYVEKYHVTDLKIWGYRNIWSKFHISDVSMIVPVSLNSFAVLSSM
                     FNNCFVSQKSASFPSYEYEGPFSDLAQRIWVEQHHQLTTLFGRDFFYDSKLPLLKRSY
                     GAIYLKEMTYKEFCNEIEFIKGMIDTKKGLKELK"
BASE COUNT          923 a          718 c          593 g          995 t
ORIGIN      
        1 cggggattcc ggttaccgac gatgggaaaa cattgtgcgg atatcgcttt gccggcccct
       61 ccatgttgta gccaatgtcc ggttttgttt tcggcacttc cacttccata ttgccaatgt
      121 aaacattacg aagtaggctt accaccgagt ctttgtttcg atgacccaaa cgaaccaata
      181 tggcatttcc ggtattggta gctttgatat tccgaacatc aatattttca agcacaccac
      241 cgtcaacagc ttcgatagca atggcagagc ggaaagtatc aaacactttg atatctttta
      301 tcgtgatatt tttaaaaccg ccccacgaag ctgtacccag ttttacagca ttggcactgg
      361 atcgaaccac acaatcagcc acataaatat tttcgcaacg gctattccta tcttccgatt
      421 tcaggcaaat gccatcgtcg tcggcattga aaaaactatt ggtcagtttt acatctttac
      481 aatcgacgaa atcaactccg tcgttattcc agaaaacatt gctctcaact tcgatgctat
      541 ccatcagtat attagaacat ttgttgtagc gttgtaccca acaaagtgca ttgcgaagtg
      601 taattccttt tatcgttact ttatcgcaat tattgaaatt gattattttg ggacgatttt
      661 cttcttcggg acgaacctga tgccatggat tttcggtctg ccattctttg tcctgaagtg
      721 ttccggcatg aagcatcacg taaatatctt tcaatagtgc ttctccctgt ccatcaatca
      781 tacccttgcc ggtaatcgaa atattcgttg ctttatccgc aattaaaagc gctgatgcct
      841 gcgatgatgg tccgtaatca gtcctacggg tgcttcctgc caataccgca tatttctcga
      901 ggtgcagatt cacattcgat ttcatagtga gcacacctgt tacaaatcgt cccggtggaa
      961 tcacaacagt accgccacct gcagctgata cttcatcaat ggctttttga ataattgccg
     1021 tattttcggt agtattactt gatctagctc ccaaatcaat gatattgata gttttcgact
     1081 gtccaatggc agaagtaacc ataagaagaa ataatcctgt aaaaaaagag gttctcataa
     1141 tatttgaata tcaattggtt attttgcgta atttttattt ggatttttta taccgataca
     1201 gttcttttcc gttttcgtca acaaaaatga attcgaaata atcctttttt actgtacaaa
     1261 tcgtaaaacc ttcggagtga cttacaaatt tggccccggg aaatgtccct gtatttacac
     1321 ccagcgaacc cgatgggctc accacatagt ttatattatt tttttgaata tgttgcgcaa
     1381 tatggatatg tcctgaaaag taaaaatcca ccttgtgctt cgttagaacc ggatcgagtt
     1441 gatcgagcaa ttcggtattt ttgccccgca atgaatcggt cgagtaaact gggtgatgcc
     1501 caatcacaat tttccatttt tcggtggaag ccaacaaaac actatcgagc cattgcagtt
     1561 gctgtttggt atcctgcttt aatatatcag gatactgatc gggtagcttt ttatattcac
     1621 tcataaaagg tggcgtatct atcattacaa aacggagact attgaccgag tcgattttca
     1681 cagcaaaagt ataatacctg gcaggcatat tccaacggcg gcttatccga ctataatcaa
     1741 tcactgcctg cgtattcccc cgatactcat gatttccaag tatcggaaac caatccacca
     1801 acaaccaggg attggtatag atactttcga aattacttgt ccacagaggg tcggaggtac
     1861 ttcgcacgcc attgtaatga aatgtgtcgc cacttgttac gataagcttc ggacgaatac
     1921 tttgagccat attacccagg gtattggcta cttccttctg cttataatat ccgttttgcc
     1981 ctatatccga aacaatgaaa aaacggtatg ctgttttatc aatcacaacg gattgggcta
     2041 caactaaaag ccctgtgctg ttacagagaa acaacatcag caggagaaag aacttcttag
     2101 cgttcatctt catgattcat ttttatttaa gttctttcaa tccctttttg gtatcaatca
     2161 tcccttttat aaattctatt tcgttgcaaa actctttata agtcatttcc tttaaataaa
     2221 tagctccgta cgaacgtttt agtaatggca atttactatc gtaaaagaaa tcacgtccaa
     2281 aaagtgtcgt caattggtga tgttgttcca cccaaatgcg ctgtgccaga tcgctgaatg
     2341 gcccttcgta ttcatagctc gggaaagaag ccgatttctg acttacaaaa caattgttga
     2401 acatactgct aagcactgca aacgaattca acgaaaccgg aactatcatg ctcacatcgc
     2461 tgatatggaa tttcgaccag atattccgat atccccagat tttcaaatca gtgacgtgat
     2521 atttctctac atatttttcc aaagcgttag agatggctat tagcgttttg aaatgtgtat
     2581 ccggaccact accttcggga tccagagcca atgatacaat gttaggacga accttttcga
     2641 gcaaatctaa aataggtttt acatcgcgct ccggatcagg atattccaca aaaatatcac
     2701 cggtataaaa ttgtaaccca aggtgtgaaa catgatccag tccaatgcca aaatgttccc
     2761 aaaccagttc tgcttcaaac tcacgcgtcc agcctttaat gacctgtgca atttccgttt
     2821 ccttcgttcc cggatcaatg gttgaaagat gttgaatggt ttcatttagc gtaggcaaaa
     2881 gctctttcag gctttttaca tgcaaccaac gaacgaaatg gcgagccaac cgacaagcaa
     2941 tgtaaacact ttgttcttcg ctgttcttat tggcaatggc atttaacgtt cctgtgatat
     3001 cgtcccagaa accatcctgc tcaaaaaggt gtttgctatc gaggtatttt tcaattctac
     3061 cacttgtaat caaatttctc agcgctatca gattactgtt gatatattcg ttagtaactg
     3121 atgtaaagcc actggtgcaa tacacaaaat gattatcgtt gtgttccgac cgtaccaaat
     3181 ggtgcaataa agggaaataa gccaattcaa tatcatcgtg atgaggagc
//
LOCUS       DATDNM010000191         3550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1199709, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000191 DATDNM010000000
VERSION     DATDNM010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3550
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1199709"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1473)
                     /gene="zwf"
                     /locus_tag="VI413_03270"
     CDS             complement(<1..1473)
                     /gene="zwf"
                     /locus_tag="VI413_03270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEY6913673.1"
                     /translation="MEEIKKTAKKSSVENQILVIYGSNGDLAKRKLLPAIFQLYLDNL
                     LPERFAVVGAGSQEKTEEENRNDVRFSMLEFASEGAAENPDQLETFLESIYYQKVHNQ
                     TEEDFGKLKKYIDKLSKKLDIPHNIIYYFSIPPFLYEVVAAHMIKYGLNTESDGWKRI
                     IVEKPFGYSYDTAIDLDKKLRSGFNEDQIYRIDHYLGKETVQNIMVTRFSNGFFEPIW
                     NRKYVDRIEITASEKIGVGNRGGYYDTSGAMRDMIQNHLIQVLAVVAMEPPAIFDSES
                     IRNETVKVLQALRPIKTSEVNENVVRGQYIETMVDDKIQKGYRQEKDVAPSSKTETFV
                     AMRIFLDNWRWGDVPFYIRTGKQLPERVTEVVIHLKPAPHQLFKQRCVAQSTNMIILR
                     ISPDAGVAVDFGMKIPGAGYKVQNVNMAFHYSDLASNKISEAYERLLLDCMIGDSTLY
                     ARADAVNASWKFVDPILEAWKSNKEIPLYFYECNTWGPKEA"
     gene            complement(1639..2703)
                     /gene="corA"
                     /locus_tag="VI413_03275"
     CDS             complement(1639..2703)
                     /gene="corA"
                     /locus_tag="VI413_03275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEY6913674.1"
                     /translation="MSRYIKKKKEHIGLSPYALVFRGQKKTEKSMLYGMSFDMEGVNE
                     FEVKTTEQLNSLKRRDKINWLNIYGLDNVDLMEQMSKEFKLETNILSDVMNPATPPKV
                     QELDNGIFITIKMLQYDEHNENLLVENLSLIVGNHTLISFQEQSIHAFEPIRERIRKH
                     KNKIRISGHDYLAFALLDVVVDNYIYIIGLLGEKIESLEEEMTKDPQKELLESINTYK
                     RELNFLRKHIKPAREMILSLIKMESEFIHEENHIHFKELQDNINEAAELSDSYREILY
                     DQLNIYHSSMSTKLNEIMRVLTVISVIFIPITFIVGVYGTNFDNLPELHWHNGYYIMW
                     GTMLLTIFGMIWYFKRKKWF"
     gene            complement(2851..>3550)
                     /locus_tag="VI413_03280"
     CDS             complement(2851..>3550)
                     /locus_tag="VI413_03280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913675.1"
                     /translation="SFSILLQQNAGGSVKQNNVTLANGSAVAAQAGSTKLFTITPNAG
                     YEIATLTFNGVNVKSQLNNNQYATPVINSNGTLSVTFNKIQYRLSVKTGDSGTFSLLC
                     DYGSSPSFDISAPAGMKITSVSFNGTNVINFVVNGIYTVPSITANSSLIVTYGAISTQ
                     LGEASEANMKVYAAKSKIIIEGSVKGESIRLITILGKQLAQIQSEGEKITIPVQESAV
                     YIVKTETKTFKIVL"
BASE COUNT         1080 a          724 c          601 g         1145 t
ORIGIN      
        1 tgcttctttt ggcccccatg tattgcattc gtagaaatat aacggaattt ccttattgct
       61 tttccaggct tccaaaatag ggtctacaaa tttccaactg gcatttacag cgtcagcacg
      121 ggcataaagc gtggaatcgc caatcatgca gtccaacaat aaacgttcgt aagcttcaga
      181 tattttattg gatgccaaat cggaataatg aaaagccatg ttcacatttt gcaccttgta
      241 acctgctccg ggaattttca ttccaaaatc aacagccaca cctgcatcag gactaatcct
      301 taaaataatc atattggtgg attgcgccac acaacgctgc ttaaataact gatgtggagc
      361 tggtttcaaa tgaataacca cttcagttac acgttcaggg agttgtttcc ctgtacgaat
      421 ataaaacggg acatctcccc aacgccagtt atccaaaaat atgcgcatgg caacgaaagt
      481 ttcagtctta gaacttggag cgacatcctt ttcctgacga taaccttttt ggattttatc
      541 gtcaaccatc gtttctatat attggccgcg aactacattt tcgttaactt cagatgtttt
      601 aatgggacgc aatgcctgca aaaccttcac ggtttcatta cgaatggatt cggaatcgaa
      661 aatagcgggt ggctccatgg caacaactgc taatacctga atcaagtgat tttgaatcat
      721 atcgcgcatg gctcccgacg tatcgtagta accgccacga ttaccaacgc caattttttc
      781 agaagctgta atttctattc tatcaacata tttacgattc cagattggtt cgaaaaaacc
      841 gttggaaaaa cgggtaacca taatattctg aacggtttct ttacccaaat aatggtcaat
      901 acgataaatc tgatcttcat tgaaaccact acgcaacttt ttatccaggt caatggccgt
      961 atcatagctg tatccgaaag gtttttcaac gataatccgt ttccaaccat cgctttcggt
     1021 gttgaggcca tattttatca tgtgagccgc cacaacttcg tacaaaaatg gcggaatgga
     1081 gaaataataa atgatattat gaggaatatc aagctttttt gaaagtttat caatatactt
     1141 ctttaatttc ccaaaatctt cctcggtctg attatgaact ttttgataat aaattgactc
     1201 caggaaggtt tcaagctgat cgggattttc cgcggcacct tcactagcaa attccagcat
     1261 agaaaaacgg acatcattcc ggttttcttc ctcagttttt tcctgacttc cggcaccaac
     1321 taccgcaaaa cgctccggca gcaaattatc aagataaagt tgaaaaatgg ctggtaaaag
     1381 cttacgttta gcaaggtcac cgtttgagcc atagataact aaaatctggt tctccacaga
     1441 actcttttta gctgtttttt ttatttcttc catttaaatt acaagttaca tataatacaa
     1501 gttcgctaat aaaggtgaat tctgctaatc aaaatgagct atctaattaa tagaaccgtt
     1561 ttttataaac aaattaacgg tagattcgtt cagttctttg cagtttaaaa tgcttttaaa
     1621 tgcgtaaatc acacattctc aaaaccattt tttgcgttta aaataccaaa tcatcccaaa
     1681 aatagtaagc aacattgttc cccacataat ataataacca ttgtgccagt gcaattcggg
     1741 cagattatca aaattggtcc cgtaaacgcc tactataaaa gtgataggga taaaaatgac
     1801 tgaaataacc gtaagtacgc gcataatttc atttagcttg gtactcatgg aagaatgata
     1861 gatattcaat tgatcgtaca aaatttcccg gtagctatcc gataattcgg cagcttcatt
     1921 aatgttatcc tgcaactcct tgaagtgaat atgattttct tcatggataa attccgactc
     1981 cattttgatg aggctcaaaa tcatttcgcg cgccggcttg atatgtttcc gcaggaaatt
     2041 caattcccgt ttgtaagtat tgatactttc aagcaattct ttttggggat ctttggtcat
     2101 ttcttcttcc agactttcaa ttttttcgcc gagtaaacca atgatataga tataattatc
     2161 aacaaccaca tcgagcaagg caaaagccag atagtcgtgc cctgaaatgc gaattttgtt
     2221 cttgtgcttc cgaattcgtt cgcgtatggg ttcaaacgca tgaatggatt gttcctgaaa
     2281 cgaaattagc gtatggttcc caacaatcaa actcagattt tcgactaaca gattttcatt
     2341 gtgttcatcg tattggagca ttttaatagt aataaaaatg ccattatcta attcctgcac
     2401 tttaggcggg gttgccggat tcattacgtc cgacaaaata ttagtttcca gtttgaactc
     2461 ttttgacatt tgttccatta gatccacgtt gtcaagccca tagatattca accagtttat
     2521 tttgtcacgt ctttttagcg aattcagttg ttccgtagtt tttacttcaa actcgttcac
     2581 accttccatg tcgaaactca tgccgtacaa catgcttttt tcggtcttct tttgaccccg
     2641 aaaaacaagt gcataaggcg acaaaccaat atgctctttt ttctttttga tatatctgga
     2701 cataatagta aatgttaagc aaccatgaat gacaaagata tgtatttttt taaatataaa
     2761 aggacatatg tgagtttata aaaagaacga aaggaaagcg caggctttcc tttcgttctt
     2821 ttatatttca ataaatattt aatcagctag ctacaataca attttgaatg ttttcgtttc
     2881 cgtctttaca atataaactg cactctcttg tactggaatt gtgattttct caccttccga
     2941 ctgtatctgt gctaattgtt taccaagaat cgtaattaac cttatggatt cacctttcac
     3001 tgagccttca attataattt tcgattttgc agcatacact ttcatattgg cttcagatgc
     3061 ttcgcccaac tgagttgaaa tcgctccata cgttacaata agtgatgaat tagccgtaat
     3121 ggatggcact gtataaatac cattgactac aaaattaata acattagtgc cattaaaaga
     3181 gacagaggtt attttcattc cggctggggc agaaatatca aacgaagggg atgatccata
     3241 atcacataac aaactaaatg tcccactgtc cccagtctta actgataacc gatattgtat
     3301 tttattgaat gtaacgctta aagtaccatt agaatttatc actggcgtag catactggtt
     3361 attgtttagt tgcgacttca cattgacacc attaaaagtg agtgtagcaa tttcataacc
     3421 tgcatttgga gtaattgtaa ataacttcgt cgaaccagct tgtgcagcaa cggcagaacc
     3481 atttgccagt gttacattgt tttgcttcac acttccacct gcattttgtt gtaaaagtat
     3541 tgaaaatgaa
//
LOCUS       DATDNM010000192        23544 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_986210, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000192 DATDNM010000000
VERSION     DATDNM010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 23544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23544
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_986210"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1100)
                     /locus_tag="VI413_03285"
     CDS             complement(<1..1100)
                     /locus_tag="VI413_03285"
                     /inference="COORDINATES: protein motif:HMM:NF025851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 95 protein"
                     /protein_id="HEY6913676.1"
                     /translation="MKKTILILFVLLSFQFVEAAQPQLKLRYNFPATNWMTSALPIGN
                     GVFGGMFFGGVTQEQMQFNDKTLWSGSTTIRGAYQNFGDLYLNFPTHTSYTDYKRELS
                     LDEAIGRVSYKVGSVTYLREYFASNPDSAIVMRISAPGQTGKLTFTVNLTDAHSGTTS
                     YAGNQITMSGMSSILSYEAQVKVMNEGGTVTTNGSQISVSNADAVTIILTGATNYNPT
                     SLSYIGENASSLHNHITNRMTSTSAKVFDALKTNHLNDYQPLFNRVKLDLAVSAPDVN
                     TDVLIRSYKDNSYLDVLYYQYGRYLMLSSSRGIALPSNLQGLWNNTNSPAWQCDIHSN
                     INVQMNYWPAENTNLSECHLPFTNYVKNEATK"
     gene            complement(1526..4060)
                     /locus_tag="VI413_03290"
     CDS             complement(1526..4060)
                     /locus_tag="VI413_03290"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013469.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEY6913677.1"
                     /translation="MRNIVKYFVVLGALFIAHPHSFLAQNSIRPVGTVSDTAINRKLS
                     LNDFDKVHSPVVRFLHPDRVSYNGSCLKIDNKDIFIYSAAFHYFRTPKELWRDRFEKI
                     KAAGFNTVETYVPWNLHELNMPKNLNDFSQINFREVKEWLDMAHNEFGLYTVLRPGAF
                     ICAEFAGGGYPRWLAKYRPNSVNGFWLRSDNPQYLEWQDHWYKAVCGFIAKEQLTAKP
                     KGAKGVILMQIENEYNYQKTTNKESSLRHMYNTAVKAGIEVPIFTCMTAETRGSKDSV
                     LSQVFDCDNYYVAKNEALTCANRMGDLKAKQPNAPGFVTELQGGWFSTVKGPLSESHF
                     SDEKHFYALGMMAILGGSTGVFPYVFVGGTHFAGWGARGMTTSYDYNAAIRENGALSP
                     KYYAAKNLGKFINTYSSQLINSRGGVCTLKDVSSGVGGGLRVAKDGTCFIFIHNSSGN
                     PASGKMVVKPNDVTKAGEPIYNYDQNAAKVLINVEARGTGLEGIADIPVQYTLEPMET
                     KVLIIPAGATPEQGKWWTFTSPEMEKSQPVSIRIKEVKKYNEDFNAKWKPIAEGVSLP
                     EIGVNDARYVLYRSTVNLTSAEAEKFNHLLFNVFSRDIINLQVNGKLAKREYPTEIKA
                     AEVLRPREFSFNFITDKDYLNRYNVKGLLHSGKNEVKVVYENIGHEHGYFPMEELCGI
                     RKAGFGENDSVLLKKLKWDVATDMAGIKEGFLKPTFNASKWQVIQLDITSVIERKGSN
                     IQPKGTQDALFTWYRAEFKLPVNTSSKKTWRLLINASGNGYMYVNGHNIGRHWEVGSQ
                     REFYIPECWLNKDGKPNVIVLGLQQTMNGAVIKAIEIASYENNAIE"
     gene            complement(4121..7240)
                     /locus_tag="VI413_03295"
     CDS             complement(4121..7240)
                     /locus_tag="VI413_03295"
                     /inference="COORDINATES: protein motif:HMM:NF017263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HEY6913678.1"
                     /translation="MKKKTFFVFLLGVLFLVHHQGVNAQFFRHPGGLVSQDDIDRIAY
                     LLDTEKDPTITAAFNKLKANGHAQFTVTATPTSTVSRGGTADNYSVAYHQAAAAFQNA
                     FMWRITGDNRYADCSVNILNAWATTCKEIEGNSNASLAAGIYGYEFAQAGELLRGYSG
                     WKAADFKVFRDWMRNMWAVRSLYFLDLRHGQTIANNNAIHYWSNWGLCNVMCVMSVGL
                     LCDDVALYNEGLSHYKSDLAGNYTDVYSNPIQGLGYAEFLGNLVVWLQPDPRGPYGFL
                     GQMQESGRDQGHATMALGLAVDICQTAWNQGEDLYGHMNNRLAAGIEYVALFNSLEPK
                     TDPADSVAYAQEVRDSVPFLPYEREGWIMTENGGGMGATRPYWDRVVAHYEGEMGVKM
                     TYSEKMRAKAGIDGGGGDYGPNSGGFDHLGFTTLTNYRPQSMYPTAGHFPVTLGASIT
                     YNGKTISGNDLSGVIKDSLITLSPTLPNGVPTNGIWKWETGGATTRELTFKVQKSGIY
                     RVTYTSANGTKSRATFNIAVWGDCSPEKLYYGVTVVDTVYADTVVNVLPYQKFTLSIN
                     TRYNDRGTAVWNNGNTGFSLVVTNGVRKDSTFWVDHFNRGGYKTRVRFHVHLKFITPS
                     VSLAGSPSDATSNVVVQAGQAVELIPITAVGFDGGIFQWSTGHKSKTLFVLNNQKGSS
                     VTARYTLVKNNITYVDSIRFNISVVNHNYQLPNGDYYIRNTKDSSYLTNKNLNSTTKV
                     APTFETIGDALSRTWTITKETDAKASGRFKIVSKKDGNYLSENCTFGTNAYYPDWNTY
                     TLHALDGENLFAVQNGGKAGALFWTINGNTVTGKGTTAQNGYPFLIMPVVPRPASPRL
                     PGECVPSYIAPSYSIIGVPAKRGDTVSVQIGKSVTLNPVKVVGISGGSWLWGDNSTGS
                     TLSLTNVQKDGVYPVTFTYPEGDSTYVFKLTYVLKALPATGINDVASSLATVYPNPVT
                     NQLTVKVIDNTAQNSTFDLYTIDGMKLKSISCVSTENKVNTSDVPAGLYIGVLNENGK
                     CQTFKITKK"
     gene            complement(7246..10023)
                     /locus_tag="VI413_03300"
     CDS             complement(7246..10023)
                     /locus_tag="VI413_03300"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEY6913679.1"
                     /translation="MRKNYFFGALLMLIVSVHAGWAQTYSLKDLTSTEFSAGGNQYWS
                     FEKHDVGVGTYSTFTTFGDNSNAVNYYDPYITERFNFYPIMNKPETGSQYTTKRRAWF
                     SDPNEYLYVAEEYPAGTTVGTNLTYGDHATYPDSLMGYEVYSLSAGKNSAITFTVPAD
                     GYYRVDMRVLREDLWSTIGVMKVYQFFRFGGTGTAYSTGKEFSYGKSQGIDLLQASNS
                     ALLAEALTHIPETPQVISGGNATRGLPTYSTSNYIYFYAKAGDKISFEADARSTGNTE
                     TSSLGQSRGAYARTKWINLAVSVSDQATASASDRFINPYYTDPALLTQLNNTLDLTQT
                     IIVNNDYSVSTRNALSSLSDAISQRLADGAVLPLEIPGLIAQLNQAIEVCKASKGGLK
                     VRYTFDHVNGTTVTDESGLGNNGTLNSASVITMGNYHAMDLGTNKGYLDMGSTLGTVV
                     STMNDYTISAYYRIAPDAPLTGAGFFIWTFSTLQANSATAGQYIYYQLQNQRLAVTSA
                     GYKVEKATAVTPVKAANKGSWQHVVYTQSGASGKLYVNGVVVAQNDAMPLPSATFTTT
                     TPYNWIGRPGFGSDNYLSKTLVTDFRLYNYAVPVDSINTWAGHTTDLDVAMTIGPVGD
                     FTALNTKIAQCQTVANSAQIGTTAGLYRQTAVDSLNTAISVAQALVTENKANQFVIDT
                     RTQLLSVSYDTFIASKIITVNALAEGKYYIKVNDTYFVTNPGTSVIANGTAPSVANGG
                     MSTTQLSDSTQCFNFSFVTALTPPRYSIYSCNNENGTHRHITETGVYQATWGSADNAW
                     RTFNIYFDGTAYAIRLAGSAGTTYWSWDATNKKVVKGAATPQYIFKLLPFGISGVNDI
                     NSNGVKVSTVNNAILVTSENKVTVSVFNLTGIQIARVAVNGTQSIPMKSGLYIVKVDG
                     AASVVSKIMVK"
     gene            complement(10063..11712)
                     /locus_tag="VI413_03305"
     CDS             complement(10063..11712)
                     /locus_tag="VI413_03305"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913680.1"
                     /translation="MKKLLNIILVVVFSTSILLLSSCEDMLSVDSNRYITVDQNTLST
                     SGDSVNSVLGILRCTQKIGERYILFGEMRADLLDVTPYTPASIRQINNFTVDSTNLYA
                     NPRDYYSIINNCNYFISRTSGANNPLTKENTLVHAIRAWTYMQIAINWGKVHYCTKPL
                     LTVDDTQQNFPVLDIAALADSLIDDLQPLKGLSYPDYGDIYEKTGSTLKSTSLFIPIK
                     LVLGDLYLWRGKTKADFENAATCYAEYIDASVSRFGVNPIYLHWTYDNYLQKNYETAS
                     PVDSWSMFMGASKYPETFTFIQMATTPSEGIVCPIPQNLSYFTASNVINDLWDDQTYT
                     LHVDATSSAPAANYPISGDLRKLGNRRSLLSINGSDSPVSTLYKLGISNHILLYRLGL
                     VMLRYAEAVNRAGYPATAFAVLKYGLKSTVLTDATKIPTSEQNANTSLVKIFTNAKFD
                     TNIGVHARGCGNCEYSTNYKIAGTDSIAWVEEAICDELALETSFEGNRFGDLMRIASR
                     RNDLDFLAKRVAAKHGGDSQLRGLLRNNKKNWYLPEFSNNK"
     gene            complement(11729..14737)
                     /locus_tag="VI413_03310"
     CDS             complement(11729..14737)
                     /locus_tag="VI413_03310"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6913681.1"
                     /translation="MQNLVTVKGHIRDAATKTPLLGAKVQSKDKKFSAITDEDGAFTV
                     KIPNFVNILYISAPDYSLIEYPVQGKSEIEVLLIKEGAEKTLHSALTPDAQMQAFAGS
                     DVRVITHSATPAMGGSMFIRGYNSLNITAQPLIVLDGVVFDNQYDRNSIHQGFVLNAL
                     SNLSMDDVDNIQIIKNGTALYGSKGGNGVIVINTKRGKDPVTQITFSSMMGLNERPGT
                     TPLMNAGQFRVYVSDMLKNRYSNPAQLSSLPFLNDNPQFYDYARYHNDNKWSDDVYQN
                     GLTQSYNFNVNGGDNVALYNLSVGYAKANSTVKVNDFTRFNARFNSDINLTYRFKFSF
                     DLSYAQTDRQMRDDGFSQSPSDVITSPTVLAMIKSPILIPYEQTRDGAVTSDLSDADF
                     LGIANPISIIQKGVGASSQNYLNLSVRPTYQFTPSLKLCGVVNVSLNTLFEKYFRPDA
                     GVADILIPGAGLLYSRNFVKGQNSKQISASTNLYLSWDKKYDLHTLDINGGVRYYNDW
                     YMAEYGSGHNTPTDLNPNLSKGLLYRMGHGSDDKWTSISWYATANYSFLDKYFLNAVI
                     TADASSRFGKDADMLKFAGVKWGVYPSIDAAWLISSENFMKAVSFINLLKLRIGYGVT
                     GNDNIPIGITQTTFSPIQYINEYTGKVISNIGNTTLKPEMVEKSNIGIDFNVLNNRLS
                     ISADVYHHVTSNLLTAKPLNFVSGMDFYWTNDGKLQNNGIEVSANAVLLTTKTLRWDF
                     GVSIAHYKNKILQMPNGDDINNIYGAEIRTSVGQSAGLFYGYKTLGVFSTTDDALAAN
                     LKIADATGLKYNSFKAGDIHFADLKKDGIIDENDKTIIGDPNPDFTGSFNTRFSYKRI
                     SLDALFTYSYGNDVYNYVRSQLESGRNLYNQSVALQNRWVNEGQVTSIPQSSYGDPMG
                     NSRFSDRWIEDGSYLRFKSLTLSYDVAIKSTAISGLTIWGSVNNLFTFTKYLGVDPEF
                     SISNSVTYQGIDAGLLPQGRSCFVGLKLNL"
     gene            complement(14869..16428)
                     /locus_tag="VI413_03315"
     CDS             complement(14869..16428)
                     /locus_tag="VI413_03315"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6913682.1"
                     /translation="MDNKLIKCILRTKILFLSIVLFVSCTDEIWNQHYNPQANIVAND
                     NLWTTIENTPELSRFAKVLKSHGYDKTLSQTQAYTIFAPDNNAMEAIDTSKMDVKKEL
                     IENHISRYFLPATGYQNVAIATLNGKRNSLYYADGRYHYGDAQFANPAKDIVASNGIV
                     HVLNGVAKFSPNIWEYLSKRSDMDSLRNYLYSFNDLLFVPELSVPGGTENGQQTYLDS
                     VFVNYNKKLSSLRGYIDAEDSSYIMLAPNNAAWQNAYNNIKSYYKYSGSKNYADSMQR
                     VNTKAAMVKDLFFNSHAQKSPVDSMVSTVRSTFYNPQYLFDGADMVKTSNGLVYITND
                     LKIDALSSWFKPITVEAEQVVGREALSSTAYSERVNIVNAGVSGNKYLRLTPSSSTAN
                     PSVTFDIPGTLSSTYDISCVFVSPYVYNPNALGVKKCKVYFNLTYTNAAGMKADPVRY
                     PATGTIEVNPNKNDSILAFPNITFPVANAGEKVTTVKVQIISFVLRSETSNYSRELLI
                     DCILLKPKKQQ"
     gene            complement(16457..18373)
                     /locus_tag="VI413_03320"
     CDS             complement(16457..18373)
                     /locus_tag="VI413_03320"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6913683.1"
                     /translation="MKSQSIYKFSFIYIVLGCLFLLTFQSCVDSDNVGGSFYTFTGNT
                     VGSYLEKHPESYSEFWKAAKKVEIDDLLKSYNSYTCFAPNDSAMRNYYKTQGVTSMDE
                     LPVEKLKYLVYSHLIPDKIYQTSDLIDGALSFTNMNSRYLVVGHKALQTTVNVVINSN
                     SIVVDNGNTVQNGVVYTLNRVLTPSTSAIPTIINGDPRVKLFAEALNSTGIADSLQLL
                     KDETYVPEVNPLSIDGKTICRSPKLRKFGYTVFVEPDDVFQLYGIKNLEDLKKYAASV
                     YDKVYPEDAGITDITDRRNSLNRFVSYHIIDKTVYYNNFFYKCNMALDATLYEFMETL
                     CPNTTFKVSNETNGVVINSDVARGVGGVTVFPTQAGYQQDTENGVYHLIDNVLVYDQK
                     VITMMLNTRIRVDAASLHPELMTNGIRFEKGDNPSGVTGAANYYKFPNGYLKNAKIIS
                     SNTRLYYLQGQKSSGSWVNYQADEMMAQGKFDFVLRLPPVPAGTYEVRFGYTANPYRG
                     ILQFYVDDDNGNMVPRGIPLNMKITAESPAIGWVGDASTLDDGIEIDKMLRNRGYMKG
                     GTTYMAGNISARAWSQAMRRIVCTETWNHDGPHYLRFKSVSGDDLDQFMIDYFELVPT
                     NVYNNPNGQPEDRL"
     gene            complement(18388..19992)
                     /locus_tag="VI413_03325"
     CDS             complement(18388..19992)
                     /locus_tag="VI413_03325"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913684.1"
                     /translation="MKNIKYILFTLSLLFLATGCNDFLDKKPESDLLLDDFWKKESDV
                     DAVVRACYCAMQEDDFMSRVILWGELRGDNVIANTSADDDIKQINNVNILPTNGYCSW
                     KSFYTVINYCNTVLKYAPDVVHIDPNFSEKDLQAREAEVYAIRALCYFYLVRTYRDIP
                     YSTEATVSNAQNLLIKQTPPDEVLDNITNDLLQAEQWALKSYPTVSATKGRITQDAIR
                     AILADVYLWRQNYGKCIEYCDKLINETETQISYSGAITVRPKYQLVNEMFSSASSAIT
                     LSNSSVSSIIFENGNSSESIFELQFSSDNKNDMLTNLYGQTAVGKLIATTSYATTTSV
                     FPETDQRKSDFIVTKATQAGQYQIFKYLGHRISDVSAFPYSFKITTSNWIFYRITDIM
                     LMKAEALVQLSGSEDNLRKALQIVNTTYKRANHSSASPVDTLDYKNYNTQNAMESLVL
                     LERQRELMFEGKRWFDLVRMAERKKTTEPLVNGVISKYTSNQNMISIKLSVMNAIYLP
                     ISQNELVVNTLLKQNPYYETSSDIVK"
     gene            complement(20026..23340)
                     /locus_tag="VI413_03330"
     CDS             complement(20026..23340)
                     /locus_tag="VI413_03330"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6913685.1"
                     /translation="MRRVLTILIIAILSSFQVICAQQSASIVIVGSVQSKTDGALIGV
                     NIREVDATNRIMSGTLTDINGNFSLKIKNPANKLQITYVGYKSTIVAIGAKRKFSILL
                     EDASHSIDVVEIKGKKLVNAGGINIPVRENSMAMQTLKADFENLSVASIDEALQGQIA
                     GLDVISNSGDLGAGSTMRLRGTASINANVTPLIVVNDLIFDAPNSDNFDFVNANNESF
                     ANLLSINVDDIEDINVMKDGAASARWGSRGANGVISIRTKKGMRGKPRLTYTYRLSAK
                     TQREGMKMLNGDQYTMFLKEAYFNPKQSDRTSDINEFNYIRNDAVFPDWRMYNNNTDW
                     VSAVKTTGIVNDHYLTLRGGGEKATFYISGGYYNEKGSIIGQNLDRFTTRMDLSYNVS
                     DRILFQSEMSVSYTNEQKNYNNNLLGVAYQKMPNMAIYREYEDGVSSSDYYLMPQNVN
                     GRYNSALDDQRKLTNPVAMAYEAINNVKSFRLIPTFRLQYDILPREDRQLLQLKGLVN
                     FDISNNTSYAFLPRELSTALWTDGSMNKTNYGNSNGNSVTGRVEMQWMPKFANSDHTL
                     STYASAEIRYSSSVGQSETSYGLPKGITSPTAGSFISDMSSSTGYGAGMSATFSSHYS
                     YKSKYNVDFTFRREGSTKFGPKRRFGNFGGLALRWNVIDEEFMTPTRKWLSMLAVRLS
                     TGVTGNPPKDEYLHFSRYGVWNTYVDGGSIRPLSVRLDDLRWETVTDKNAGVDLGFLD
                     DRFEVHFNYYDKTTNDLLNKDVAIPTSSGFGTYSWDNVGSVNNKGWELYLNANKFIKA
                     GDFSVDCNVNFSNSRNVVLNLDDIILKSYNADYDFQNGSYMSRLQLNNSLGSIYGFKY
                     KGVYQYSADNPRLVESNYTLGTAPIARNAAGKIIYNSEGKPVPMYFAYGTSSQMAFQG
                     GDAIYEDINHDGNINQLDIVYLGNSNPKFNGGMGLKFNYARLSVNIYSVFRYGNKIVN
                     IGRMNAENMFSNNNQCSSINWRWRKEGDQTDYPRAMNGSNSNRNFLGSDRYVEDGSFW
                     RINQISFNYLLPSKFLSRFSISAASFYFTLYNLACFTKYSGVDPEVGYGSWGVSQDRN
                     QTPRPQSFTAGLSLQF"
     gene            complement(23361..>23544)
                     /locus_tag="VI413_03335"
     CDS             complement(23361..>23544)
                     /locus_tag="VI413_03335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913686.1"
                     /translation="GNYNIMARDFKFNILDLSKATTIETSSYVVIHQVDKCLYFEGEY
                     EMLANNKSQVKKKIRR"
BASE COUNT         7080 a         5111 c         4080 g         7273 t
ORIGIN      
        1 aattttgtcg cttcattctt cacatagttt gtaaacggca agtggcattc ggataagttg
       61 gtgttttcgg ccggccagta attcatctga acattaatat tgctatggat gtcgcattgc
      121 caggccggac tatttgtatt gttccaaagt ccctgaagat tggatggcaa tgcaattcca
      181 cgggaagaac tcagcattaa gtaacggcca tattggtaat acaacacatc cagatacgaa
      241 ttatctttat acgaacgaat caaaacatct gtattcacat cgggagccga cacggctaaa
      301 tcaagtttca cgcggttaaa cagcggttga tagtcgttca ggtgattcgt ttttaatgcg
      361 tcaaatactt ttgcactggt gcttgtcata cggtttgtga tatgattgtg caaagagctg
      421 gcattttcgc ctatataact caatgaagtg ggattgtaat tagtagctcc tgtaagaata
      481 atcgttacag catctgcatt cgaaactgag atttgactgc cgtttgtagt cactgttccg
      541 ccttcattca tcacttttac ctgtgcttca taagataata ttgaactcat tccactcata
      601 gtaatttgat tgcctgcgta tgaagttgtt ccgctgtgag cgtcggtcag attaacagta
      661 aaagttagtt tcccggtttg tcccggagcc gaaattcgca taacaattgc gctatccgga
      721 ttgctggcaa agtattcgcg caggtacgta accgacccaa ctttgtacga aacccttccg
      781 atagcctcat ccaaacttag ttctctttta tagtcggtgt acgaagtatg cgttgggaag
      841 ttaaggtata gatcaccaaa attctgatat gcacctctga tagttgtact acccgaccaa
      901 agtgttttat cgttaaactg catttgctcc tgagttacac caccaaaaaa cattccgccg
      961 aacacaccat ttcctatggg caaagccgat gtcatccagt ttgttgccgg gaaattgtag
     1021 cgcaatttca attgtggctg agcagcttca acaaactgaa atgagagtaa tacgaataag
     1081 attaaaattg tttttttcat tactactaga agttaaatta ttgttagttt atttaatttt
     1141 taatatagta ttagcggaca tatatcaaat cataagacca ttgagtttac aaagaaattg
     1201 catttgtatc atttctacag gaggtgaatt catattttga agggggtgaa ttcgtacctt
     1261 tcagctataa aacgtatttt aaatggtaca ataggcatct caggcagaac tttaaagtaa
     1321 tacaatcgac aaaggcatat ttaggagtga tccttttttt acatggaaga ttatcattgt
     1381 tttacaatat ccagatataa agatatttgc ttgacacatc gaactctcgt taaatcaatg
     1441 cattctacga aaaaaggcca ttaagcacgt caacttaatg acctttttca tgtttaccaa
     1501 tccaaaatat taacttcagc caattttatt caatggcatt attctcatac gatgctattt
     1561 cgattgcttt aatcacagca ccattcattg tttgctgcaa accaagaaca attacattcg
     1621 gttttccatc tttattcaac caacattcgg ggatataaaa ttcccgttgc gaaccaactt
     1681 cccaatgccg gccgatatta tgtccattca catacatata tccatttccg gaagcattta
     1741 tcagcaggcg ccatgtcttt tttgaactgg tatttactgg caacttaaat tcagccctat
     1801 accaggtaaa caatgcatcc tgtgtccctt tgggctggat attactgcct tttctttcta
     1861 tcacacttgt tatatcaagt tgaataacct gccatttgct tgcattaaag gttggtttca
     1921 aaaagccttc tttaatgcca gccatatcgg tagccacatc ccattttagt tttttcagca
     1981 atacagaatc attttcacca aatccggctt tacgaatccc gcaaagttcc tccataggaa
     2041 aataaccatg ctcgtgtcca atattttcgt acaccacttt gacttcgttc ttaccgctat
     2101 gcaacaatcc tttcacatta tacctgttta gataatcttt gtcggtaata aaattgaacg
     2161 agaattccct cgggcgcaac acttctgccg cttttatttc agtaggatat tcacgctttg
     2221 ccaacttacc atttacctgc aagttaatta tatcacgcga aaacacattg aataacaaat
     2281 ggttgaattt ctcagcttct gctgaagtaa gattcactgt tgaacgataa agcacgtatc
     2341 gcgcatcatt cacacctatt tcggggagcg aaacaccctc tgctattggt ttccacttag
     2401 cgttaaagtc ttcattgtat ttttttactt cctttattcg tatgcttacc ggctgtgatt
     2461 tttccatttc gggcgatgta aatgtccacc atttgccttg ttctggtgtt gcccctgcag
     2521 gaataatcag caccttggtc tccattggct ccaatgtata ttgaacaggg atatctgcaa
     2581 taccttcaag ccccgtaccc cttgcctcaa cgtttatcag cactttggca gcattctgat
     2641 cgtagttgta tatcggttcg ccggctttag tgacgtcgtt tggtttcacc accatcttac
     2701 ccgaagccgg gttgcccgaa ctattgtgta taaaaatgaa gcaggttcca tccttcgcca
     2761 cacgcaagcc tcctcctact ccgcttgaca catcttttaa ggtgcaaacc ccaccacggg
     2821 agttgatgag ttgcgaagag taggtattga taaacttccc aagatttttg gccgcataat
     2881 acttaggcga taaagctccg ttttcacgta ttgccgcatt gtagtcgtat gatgtagtca
     2941 tgccacgagc accccagcct gcaaaatgag ttccacccac aaaaacatac gggaaaactc
     3001 ctgtagaacc acctaaaatc gccatcattc ccaaagcata gaaatgtttc tcatccgaaa
     3061 aatggctctc acttaaaggt cctttcacgg tagagaacca accaccctgc aactcagtta
     3121 caaagccggg agcattcggt tgtttggctt tcaaatcccc catacggttt gcacaagtca
     3181 gggcttcatt tttagccacg taataattat cgcaatcgaa tacctgcgac aatacactgt
     3241 ccttgctacc acgggtttca gcggtcatgc aggtaaagat ggggacttca attccagctt
     3301 tcactgccgt attgtacatg tggcgcagcg aactttcttt attggtagtt ttttggtaat
     3361 tgtattcgtt ttcaatttgc atcaggatca caccctttgc ccctttaggc ttagctgtga
     3421 gttgttcttt cgcaataaat ccgcaaacag ctttatacca atgatcctgc cattccagat
     3481 attgggggtt gtcgcttcgc aaccaaaatc cgttaacaga attgggacga tattttgcta
     3541 accaacgggg ataacctccg cctgcaaact cagcacaaat aaatgctccc ggacgcaaaa
     3601 cagtgtaaag cccaaactca ttatgagcca tatcgagcca ttctttcacc tccctgaagt
     3661 ttatttgaga gaaatcattc aggtttttgg gcatgtttag ctcatgtaaa ttccatggca
     3721 cataagtttc gacagtatta aaacccgctg ctttgatttt ttcaaaacga tcgcgccaaa
     3781 gttccttcgg tgtccggaaa taatgaaagg cagcgctgta aataaaaata tccttattat
     3841 ctatttttag acacgaacca ttatacgaaa ccctatcagg atgcaaaaat ctaactaccg
     3901 gcgaatgaac tttatcaaaa tcattcaaac tcagttttcg gttaatagca gtgtcagata
     3961 ctgtgcccac ggggcgaata gaattttgtg ctaaaaaact gtgagggtgc gctatgaata
     4021 gcgcacccaa cacaacaaaa tattttacaa tatttctcat tgatctttta tttacgttag
     4081 ctctcctaga agttaagcta caaaaggatt tgataacaat ttattttttt gtaattttaa
     4141 acgtttgaca tttaccgttt tcattaagca ctccaatgta taaacctgcc ggtacatctg
     4201 aagtattaac tttattttcg gtggaaacgc aactaattga tttaagtttc attccgtcta
     4261 tcgtgtataa atcaaaagtt gaattctgtg ctgtattatc aattacctta accgtcaatt
     4321 gattagtcac cggatttgga taaacagttg ccaatgaaga ggctacatcg tttattcccg
     4381 ttgccggaag tgccttcagc acataagtca gtttgaatac atacgttgaa tcaccttcgg
     4441 gataagtgaa cgtaacagga taaactccat ccttctgcac atttgtcagg gaaagtgtac
     4501 tacctgtgct attatctccc caaagccatg atccaccgct gattccaact actttaaccg
     4561 gattgagtgt cacgctctta cctatttgaa cacttactgt atcgcctcgt ttagcaggta
     4621 cgccgatgat agaataagat ggtgcaatat atgaaggcac acactctccg ggtaatcttg
     4681 gagaagccgg acgtggtaca actggcatta tcagaaaagg ataaccattc tgtgctgttg
     4741 ttcctttacc ggttacagtg ttaccattta ttgtccaaaa caatgcacct gccttacctc
     4801 cattttgaac ggcgaacaaa ttctctccat ccaacgcatg taaggtataa gtgttccaat
     4861 ctggataata ggcatttgtt ccaaaagtac aattttcgct cagatagttt ccatcttttt
     4921 tagatactat cttaaaacgg ccactcgctt ttgcatcagt ttccttagta attgtccatg
     4981 tacgcgaaag agcgtctcct atggtttcaa aagtaggagc taccttggtt gtactattca
     5041 gatttttgtt cgtaagatac gaactgtctt ttgtatttct gatataataa tccccgttcg
     5101 gcaactgata attatgattt acgacagata tgttaaaacg aatcgagtct acataggtta
     5161 tattattttt aaccagcgta taacgagcag tcacgctact tcccttttgg ttattcagta
     5221 caaataaagt cttagactta tgccctgtac tccactgaaa gatacctcca tcaaagccaa
     5281 ctgctgttat tgggattaac tcaacagcct gtccagcctg cactacaaca ttgctggtag
     5341 cgtcggaagg acttcctgct aacgaaacag atggtgtaat aaatttcaaa tgaacatgaa
     5401 aacgtacacg tgtcttgtat ccacctctgt tgaaatgatc tacccagaaa gttgagtcct
     5461 tgcgaacccc attagttacc acaagactaa aacctgtgtt cccattgttc caaacagcag
     5521 tacctctgtc gttatagcga gtattgattg ataatgtgaa cttctgatat ggcaacacat
     5581 taacaacagt atcagcatat acagtatcta caacagtaac cccataatat agcttttcgg
     5641 gcgaacaatc accccacaca gcaatattaa atgtagcccg gcttttagtt ccattagctg
     5701 aagtataggt tacacggtaa attccacttt tctgcacttt gaatgttagt tcacgagtag
     5761 tggctcctcc ggtttcccat ttccagattc cattggtggg cacaccattg ggcaaagtag
     5821 gactaagagt tattaacgaa tcctttatca ctccactcaa atcgttacca gagatagttt
     5881 ttccattgta cgtgatactg gcacccaacg taaccgggaa gtgacctgca gtaggataca
     5941 ttgattgggg cctgtagttg gttaatgtag tgaatcccag atgatcaaat ccaccactat
     6001 tagggccata atctccacca cctccatcaa tacctgcttt tgcacgcatc ttctctgaat
     6061 aggtcatttt aacacccatc tcaccttcgt agtgagccac tactctgtcc cagtaaggac
     6121 gggttgcccc catacctcca ccattttctg tcataatcca accttcgcgc tcatagggca
     6181 aaaatggaac cgaatctctg acttcttgcg cataggcaac cgaatctgct gggtctgttt
     6241 taggttccaa agaattgaat aatgcaacgt attcgattcc ggcagccaac cgattgttca
     6301 tatgtccata caaatcttca ccttgattcc atgctgtctg gcaaatatca acggccaaac
     6361 cgagtgccat agttgcatgc ccctgatcgc gaccactctc ctgcatttga cctaagaatc
     6421 cataagggcc acggggatcg ggctgcaacc aaactaccag gtttccaaga aattcggcat
     6481 atcctaaacc ctggatcgga ttgctgtaga catcagtata attacctgct aaatcacttt
     6541 tgtagtgtga caatccttca ttatacaaag ccacatcgtc gcagagcaag cctacactca
     6601 tcacacacat cacgttacac aagccccaat tggaccaata gtgaatcgca ttgttattcg
     6661 ctatggtctg accatgcctt aaatccagaa aatacaaaga ccttactgcc cacatgttgc
     6721 gcatccagtc ccggaatact ttgaaatcag ctgctttcca acccgagtat ccacgtagca
     6781 attcacccgc ttgggcaaat tcatacccat aaatcccagc tgccagggaa gcattcgagt
     6841 taccttcaat ctccttacac gtagttgccc aggcattgag gatattcacc gaacaatcag
     6901 cataccgatt gtcaccggta atcctccaca taaaggcatt ctgaaaggct gctgccgcct
     6961 ggtgatatgc taccgaatag ttatcggcag tccctccccg acttacagta gaagtaggag
     7021 tggctgtaac ggtaaactgc gcatgaccat tcgccttcag cttgttgaat gcagcagtaa
     7081 tagtcggatc tttctctgta tctaacaggt aagcgatgcg atctatatca tcctgactta
     7141 ccaagcctcc gggatgtcga aaaaactgag cattaacacc ttgatggtgc actagaaata
     7201 gcacacccaa caagaatacg aagaaagttt tctttttcat tttatttatt ttaccatgat
     7261 tttactaacc acagaggcag caccatcaac tttcacaata tataaaccag acttcatcgg
     7321 aatagattgt gtgccattta cagctactct agcaatttgt atacctgtaa ggttgaaaac
     7381 cgaaacagtt accttatttt cagatgttac caagatagca ttatttaccg ttgacacctt
     7441 cactccgttt gagtttatat catttacccc tgaaattccg aatgggagca atttaaatat
     7501 atactgaggc gttgcagcac cttttactac ttttttgttt gtagcatccc atgaccaata
     7561 agttgtacca gccgatccag ccaaacgaat agcataagct gtaccatcaa aatatatatt
     7621 aaatgtacgc catgcattat ctgcactacc ccatgttgcc tgataaacac ctgtttctgt
     7681 gatatggcgg tgagtaccat tttcattatt acaactgtag atagaataac gcggaggtgt
     7741 aagagcagtc acaaatgaga aattgaagca ctgagtagaa tccgaaagct gggttgttga
     7801 catacctcca ttggctacag aaggtgcagt tccattagca ataacacttg ttcccggatt
     7861 agttacaaaa taagtatcgt ttactttaat gtaatactta ccttcagcta aagcattaac
     7921 agttataatc tttgaagcaa taaatgtatc atatgacaca gaaagtaact gtgtgcgagt
     7981 atcaattaca aattgattag ctttgttttc agtgacaagt gcttgagcaa cagaaatagc
     8041 tgtattgagc gaatcaacag ctgtttggcg atataaaccg gcagtcgttc caatttgggc
     8101 actatttgca actgtctgac attgagcaat cttagtatta agagcagtaa aatcgcctac
     8161 agggccaata gtcatagcaa catcaagatc ggttgtatgc ccggcccagg tgttgatact
     8221 gtctactggg actgcataat tgtacaatct gaaatcagtt accaaggttt tagacaagta
     8281 attatcgctt ccaaaaccag gcctgccaat ccaattgtaa ggcgttgtag tggtaaatgt
     8341 agcacttggc aatggcattg catcgttttg agctactaca acaccattca cgtacaattt
     8401 accagaagca ccactctgag tataaaccac atgttgccaa gaacctttat tagctgcctt
     8461 aaccggtgta accgcagtag ctttctctac tttataacct gctgaagtta ccgccaaacg
     8521 ttgattttgt aattgataat aaatatattg accagcagta gcactatttg cctgtaatgt
     8581 agagaatgtc caaataaaga atccagctcc agtcagaggt gcgtcagggg caatgcgata
     8641 ataggcagaa atcgtgtaat cattcattgt agaaactaca gtacctaatg ttgatcccat
     8701 atccagatac cctttatttg tgcccaaatc cattgcatga tagttaccca tagtaataac
     8761 cgacgcactg ttcaatgtac cattattacc cagacctgat tcatcagtaa ctgtagtacc
     8821 atttacatga tcgaatgtat atcttacttt taaacctcct tttgatgctt tacaaacttc
     8881 tattgcttgg tttagctgag caatcaagcc tggtatttcc aatggcaaaa cagcaccatc
     8941 agccaaacgc tgactaatgg catccgacaa agaacttaaa gcgtttcttg ttgaaacaga
     9001 atagtcattg ttaacaatta ttgtttgagt aagatctaaa gtattattca attgggtcaa
     9061 cagtgcagga tcagtgtaat atggatttat aaatcgatcg cttgcagaag cagtagcctg
     9121 atctgacact gaaacagcta aattgatcca ttttgtacgt gcataagctc cacgagattg
     9181 accaagagac gaagtttcgg tattacctgt gctacgagca tcagcctcga aagaaatctt
     9241 atcgcctgct tttgcataga aataaatata atttgatgtg ctataagtag gcagcccacg
     9301 tgtagcattc cctccggaaa ttacctgtgg agtctcggga atatgtgtaa gagcttcagc
     9361 taatagagct gaattacttg cctgaagtaa atctatgcct tgtgatttac cataagaaaa
     9421 ctctttacct gtagagtaag ctgtgcctgt acctccaaaa cggaagaact gataaacctt
     9481 cataacacca atggtactcc acaagtcctc acgaagaact cgcatatcaa cacggtagta
     9541 tccatcagca ggaacggtaa aagtaatagc cgagtttttt cctgcactaa gcgaatatac
     9601 ctcataaccc atcaacgaat cagggtatgt agcatggtca ccataagtaa ggttggttcc
     9661 cacagttgta cctgccggat attcctcagc cacatacaga tattcatttg ggtcagaaaa
     9721 ccatgcccta cgcttagttg tatactgtga gccagtttca ggtttattca ttataggata
     9781 aaaattaaac ctttcagtaa tgtacggatc gtaataattt acggcattac tattatctcc
     9841 gaatgtagta aacgtagaat atgttcccac acctacatcg tgtttctcaa aactccagta
     9901 ctggttacct ccggcagaga actcagtaga agtcaaatcc ttcaggctgt aagtttgagc
     9961 ccagcctgcg tgtaccgata ctatcagcat cagtaacgcc ccaaaaaagt aattctttct
    10021 catgatactt tgattaaaaa aagttatttg taattgtaat tattatttgt tgttagaaaa
    10081 ttcaggtaag taccaatttt ttttgttgtt tcttaacaat cctcttaatt gactatctcc
    10141 cccatgcttt gcggctactc gtttagccaa aaaatccagg tcattgcgtc tggaagctat
    10201 tcgcatcaaa tcgccaaaac gatttccttc gaaagaagtt tccaatgcca gttcgtcaca
    10261 gatagcttct tctacccagg caatagaatc agtaccggca attttataat ttgttgagta
    10321 ttcgcaatta ccacaaccac gtgcatgaac tccaatatta gtatcaaact ttgcattggt
    10381 aaaaatttta accagtgaag tatttgcgtt ttgctcactc gttggaattt tagtagcatc
    10441 agtcagtacc gtcgatttca atccatattt tagtacagca aatgcagtag ccggataccc
    10501 tgctctgttc actgcttcgg cataacgcaa catcaccagt cccaaacgat agagtaaaat
    10561 gtgattcgat attccaagtt tgtatagcgt actaaccgga ctatcacttc catttatact
    10621 aagaagagat ctgcgatttc cgagtttacg cagatcgccg gaaatgggat aattagcagc
    10681 aggcgctgaa gacgttgcat ccacatgcaa agtataagtc tggtcatccc acaagtcatt
    10741 tataacattg gacgctgtaa aataactcaa attctgagga ataggacata caattccctc
    10801 tgaaggagtt gttgccattt ggataaacgt aaatgtttcc ggatatttac ttgcacccat
    10861 aaacattgac caactatcaa caggcgaagc agtttcatag tttttctgca gataattatc
    10921 gtatgtccaa tgcaaatata ttggattaac tccgaatctt gagacactgg catcaatgta
    10981 ctcggcataa caagtggcag cattttcaaa atcagccttt gttttacctc tccaaagata
    11041 taagtcgcct aacactaatt taatgggtat aaataagctt gtacttttca aagtagaacc
    11101 tgttttttca taaatatcgc catagtcagg ataacttaac ccttttagcg gttgtaagtc
    11161 atcaatcaac gaatcagcca atgctgcaat atctaaaaca ggaaaatttt gctgcgtatc
    11221 atccaccgta agcagaggtt ttgtgcagta gtgtacctta ccccaattga tggcaatttg
    11281 catataagtc caggctctga tagcatgaac taaggtattt tctttcgtca aaggattgtt
    11341 tgcaccactc gttctgctga taaagtaatt acaattattt atgattgaat aataatcgcg
    11401 aggattagca tataagtttg tagaatctac ggtgaaatta tttatctgac gaatagaagc
    11461 cggcgtataa ggcgttacat ccaacaaatc ggcccgcatc tcgccgaaca aaatgtagcg
    11521 ttctccaatt ttttgagtac atcttaatat acctaagact gagtttacac tatccccgct
    11581 cgtcgacaac gtattctgat ctacagtaat ataccgattt gagtcgaccg acagcatatc
    11641 ttcacacgat gatagcaaaa gaatagaggt tgaaaaaaca acgaccaata ttatgtttaa
    11701 taattttttc atttgtgtat ttctaaaatt acaagttcaa ctttaagcca acaaaacaac
    11761 ttcttccttg tggcagcagc cctgcatcaa taccctgata agtaactgag ttgctgatag
    11821 aaaattccgg atccactccc aaatattttg taaaagtgaa cagattattt acagaacccc
    11881 aaatagttaa cccggaaatt gccgtcgatt taatcgcaac atcatacgac aaagttagag
    11941 atttaaaacg caaatacgag ccatcttcta tccagcggtc agaaaaacgg ctgttaccca
    12001 tcggatctcc ataagaactt tggggaatag atgttacttg tccttcattc acccatctat
    12061 tttgcagggc cacagattga ttatataagt tgcgtcctga ttctaactgc gaacgaacat
    12121 aattataaac atcattccca tacgaatatg tgaacaaagc atcaagagat attcttttgt
    12181 atgaaaacct tgtattaaac gatcctgtga aatcaggatt aggatcacca attatggttt
    12241 tatcattttc atcaataatt ccatctttct tcagatcagc aaagtgtata tcaccagcct
    12301 tgaaactatt atatttcagc ccggtggcat cagctatttt caaattagct gcaagcgcat
    12361 catctgtagt tgaaaaaacg ccaagtgtct tatatccata aaataaaccc gccgattgac
    12421 caacagacgt tctgatttca gcaccataaa tattatttat atcatcccca tttggcattt
    12481 gtaaaatttt attcttatag tgtgctatgc taaccccaaa atcccaacgt aatgttttcg
    12541 ttgtcagcaa aacggcattt gccgacactt cgataccatt attttgaagt tttccatcgt
    12601 tagtccaata aaagtccatt cccgaaacga aattcaatgg cttagctgtc agtagattgc
    12661 tcgttacatg atgatataca tctgccgaaa ttgataaacg gttgttcaaa acattgaagt
    12721 ctattccgat attcgatttt tcaaccattt cgggttttaa tgttgtattt ccaatattcg
    12781 atatgacttt acccgtatat tcattaatat attgaattgg gctaaaagtg gtttgagtga
    12841 taccaattgg aatattatcg ttaccggtaa caccataccc tatccttaat ttcaataggt
    12901 ttatgaaaga aactgctttc ataaaatttt cagaagaaat taaccacgct gcatctatgg
    12961 atggatatac accccactta acaccagcaa acttcaacat atcggcatct ttaccaaacc
    13021 tcgatgaggc atcagctgta attactgcat taagaaagta tttatctaaa aaactgtagt
    13081 tcgcagtagc ataccacgag attgaagtcc atttatcatc agagccatga cccatacggt
    13141 atagcaaacc cttgcttaag ttcggattta aatcagttgg agtattatga ccagagccat
    13201 attcggccat gtaccaatcg ttgtagtatc tgacacctcc attaatatcc aaggtgtgta
    13261 aatcatattt tttatcccag cttaaataca aattagtaga agctgaaatt tgtttggaat
    13321 tttgcccttt tacaaagttt cttgaataca acaatcctgc tccaggaatt aaaatatctg
    13381 cgacacctgc gtcaggtctg aagtattttt cgaataaggt gtttaatgat acattaacaa
    13441 caccgcataa tttcaaagaa ggagtgaact gataggtcgg acgtactgat aagttcaaat
    13501 agttttgtga gcttgcacct accccttttt gaataattga aatcggattg gcaataccta
    13561 aaaaatcagc gtcagacaag tcggaggtaa cagctccgtc tcgtgtttgt tcataaggaa
    13621 tcaaaattgg agactttatc attgccaata ctgtaggcga tgtaataaca tcgctcggag
    13681 attgactgaa accatcgtca cgcatttgtc tatcagtctg ggcatacgat aagtcgaacg
    13741 aaaacttgaa cctatatgtc aaatttatgt cggaattgaa gcgtgcattg aatctggtaa
    13801 aatcatttac tttaacagta ctgttggctt ttgcatatcc cactgagagg ttgtacaaag
    13861 ctacattgtc gccaccattc acgttgaaat tatacgattg cgttaatccg ttctgatata
    13921 catcgtcaga ccacttattg tcattatgat aacgtgcata atcataaaac tgtggattgt
    13981 cgttcaaaaa gggtaacgac gacaattgtg cgggattaga atacctgttt tttagcatgt
    14041 cgctcacata cactctaaac tgtccggcat tcatcaatgg tgtagtaccc gggcgttcat
    14101 ttaagcccat catactcgag aatgtaattt gcgttacagg atccttacct ctcttggtgt
    14161 taattacaat tacgccatta cctcctttac taccatataa ggcagttcca ttcttaatta
    14221 tttgaatatt atcaacatcg tccatactta gattggacaa cgcattcaga acaaatccct
    14281 gatgtatcga attcctgtca tactggttgt caaaaactac accatccagt acaatcaacg
    14341 gttgagcagt aatattcaaa gagttataac cacgaataaa cattgatcca cccattgccg
    14401 gagttgccga atgcgtaatt acccgcacat cgctacctgc aaatgcctgc atttgggcat
    14461 cgggcgtaag agctgaatgt aaggtttttt ctgcaccttc cttaatcagc aacacttcaa
    14521 tctccgattt accttgaacc gggtactcaa tcaacgaata atctggtgca gaaatataaa
    14581 gtatattgac aaagttagga atcttcaccg tgaaagcacc gtcctcatca gttatggctg
    14641 agaatttctt atccttgctt tgaactttag ctccaagcaa cggcgttttt gtagctgcat
    14701 ctcgtatatg tcctttaact gtgactaaat tctgcaagtt attattcttg ttctcaggct
    14761 gctgttttaa cactgcattt tcctgtgcac tcaatgaaat attccaacac aataaggtca
    14821 aaacagttaa acgtattaat attttattca aattttccat gcgatttttt actgttgctt
    14881 tttgggcttt aatagtatac agtcgatcaa tagttcacgt gagtaattag atgtttcaga
    14941 tctgagtaca aaacttatta tctgaacctt caccgtagtt actttctccc cagcattggc
    15001 tacagggaat gttatattag ggaatgccaa aatggagtca tttttatttg ggtttacctc
    15061 aatagtcccg gttgcaggat agcgcaccgg atcagctttc attcctgctg cattggtata
    15121 cgtaagattg aagtaaacct tacatttttt cactcctaaa gcattcggat tgtaaacata
    15181 tggagaaaca aacacacagg aaatatcgta agtacttgac aatgttccgg gaatatcgaa
    15241 agtaactgat ggatttgctg ttgaactcga aggcgttaaa cgtaaatatt tgtttcccga
    15301 cactcctgca tttactatgt taactcgctc ggagtaggca gtggatgaca aagcttctcg
    15361 tccaactact tgctctgctt caaccgtaat tggcttgaac catgaactga gtgcatctat
    15421 ttttaaatca tttgtaatat acacaagccc attactcgtt ttcaccatat cggctccgtc
    15481 gaaaagatat tgtggattgt aaaatgtact ccttacagta gaaaccattg aatcgactgg
    15541 cgatttttga gcatggctgt taaaaaacaa atctttaacc atagcagctt ttgtgtttac
    15601 tctttgcata gaatcggcat aattcttact tcctgagtat ttgtagtaac tttttatatt
    15661 attataagca ttctgccatg cagcattatt gggtgccaac ataatataag aactatcttc
    15721 cgcatcaata taccctctca agctactcaa ttttttattg taattgacaa aaaccgaatc
    15781 taaataggtt tgttggccgt tttcggtacc acccggcaca ctcaactctg gtacaaataa
    15841 aagatcattg aacgaataca aataatttcg taacgaatcc atatcacttc ttttggataa
    15901 atactcccaa atattcggtg aaaatttagc aactccgttt agcacatgca caataccgtt
    15961 cgaagcaaca atatcctttg ccggatttgc aaactgagca tcaccataat gataccgtcc
    16021 atcagcataa tacaaactgt ttctttttcc atttaaagtt gcaatcgcta cattttggta
    16081 tccggtggca ggaagaaaat atctgctaat atggttttca atcaattctt tttttacatc
    16141 catcttgctc gtatcaattg cttccatcgc attgttatca ggcgcaaaaa tcgtataagc
    16201 ctgtgtttgc gataatgtct tatcataacc gtgagatttc aacacttttg caaaacgact
    16261 taactcggga gtattttcaa ttgtagtcca caaattatca ttagccacaa tattggcttg
    16321 agggttgtaa tgttgattcc aaatttcatc ggtgcaggaa acaaacaaaa caattgacaa
    16381 gaacaatatt ttcgttcgta gaatacactt tatcagctta ttatccatat acaattctta
    16441 ttttttctag tattaatcaa agtctatctt ctggctgtcc gtttggatta ttataaacat
    16501 tcgtaggaac aagttcgaaa taatcaatca taaattgatc cagatcatcg cccgacaccg
    16561 atttgaatcg taaatagtgt ggtccatcat gattccacgt ttcggtacaa acaatacgcc
    16621 tcatagcttg actccatgca cgagccgaaa tattaccagc catataggta gtgcctcctt
    16681 tcatatagcc cctgtttcta agcattttat ctatctcaat tccatcatcc agagtggaag
    16741 catcccccac ccatccaatt gcaggacttt cggcagttat tttcatattt aatggaatac
    16801 cccttggtac catgtttccg ttatcatcat ctacgtaaaa ttgcagaata ccacggtaag
    16861 gattagccgt gtatccaaaa cgcacttcgt acgttccggc tggcactggt ggtaaacgca
    16921 gaacaaaatc aaatttcccc tgagccatca tctcatcagc ttgataattg acccaactac
    16981 cggaactctt ttgtccttgc aggtagtaaa ggcgggtatt tgacgaaata atttttgcat
    17041 ttttcaaata tccattgggg aatttataat aattggctgc tcctgtaaca ccggaaggat
    17101 tgtctccttt ttcgaatcga ataccattag tcatcaattc ggggtgcaaa ctggcagcat
    17161 ccacccttat acgtgtgtta agcatcattg ttatcacttt ctgatcgtac actaaaacat
    17221 tatcaatcag atgataaact ccattttcag tatcttgttg gtagccggct tgagttggaa
    17281 aaacagttac tccacctacc ccacgtgcta catcactatt aatcacaacc ccattcgttt
    17341 cgttcgatac tttaaatgta gtattaggac acaacgtctc cataaactca tataaagtgg
    17401 catctaatgc catattgcat ttgtaaaaaa agttgttata ataaactgtt ttatcgatta
    17461 tgtggtacga gacaaaccgg ttaagactat ttcgacgatc agtaatatcc gtaataccgg
    17521 catcttcagg gtaaactttg tcataaacag aggctgcata tttctttaaa tcctctaaat
    17581 tcttaatgcc gtatagttga aaaacgtcat ctggttctac aaatactgtg taaccaaact
    17641 tacgtaactt tggacttcgg caaatcgttt taccgtcaat tgacaaaggg ttaacctcgg
    17701 gcacataagt ttcatctttc aacaattgca acgagtcggc aatgccagtg ctattcagag
    17761 cctcagcaaa caatttcacc cttgggtctc cattaattat tgtagggatt gccgaggttg
    17821 atggagttaa taccctattc agcgtgtata caactccatt ctgtactgta ttaccattat
    17881 caaccactat tgaattggaa ttaattacaa cgtttacggt ggtttgaaga gccttgtgtc
    17941 caactaccag atagcgtgaa ttcatgttgg taaacgatag agcgccatca atcaaatcag
    18001 aagtctgata gattttatca ggtatcaaat gactataaac caaatattta agcttctcaa
    18061 caggcaattc atccatcgat gtaactccct gagttttgta gtaattacgc atagcactat
    18121 cattaggagc aaaacaggtg tatgaattat acgactttag caaatcgtca atttccactt
    18181 tcttagcagc tttccagaat tcgctatacg actcaggatg tttttcgagg taactaccaa
    18241 ctgtattgcc tgtaaaagtg taaaaactac ctccaacatt gtcgctatca acacagcttt
    18301 ggaatgtcaa gaggaacaaa cagcccaata ctatatagat aaaactaaat ttataaattg
    18361 attgtgattt catttgtact ttattttcta tttaacaata tcactggacg tttcataata
    18421 aggattctgc tttaacagtg tatttacgac caactcattt tgtgagatag gtaaataaat
    18481 agcgttcata accgataatt ttatcgatat catattctgg ttagatgtat atttagatat
    18541 cacaccatta accaacggtt cagtagtttt tttgcgttct gccatacgca ccaaatcaaa
    18601 ccatcgcttt ccttcaaaca tcaattctcg ctgacgttcg agcaacacca gactttccat
    18661 ggcattctgt gtgttataat ttttataatc caatgtatca accggagacg ccgatgagtg
    18721 attggcacgt ttataggttg tatttacaat ttgtaaagct tttctaagat tatcttcaga
    18781 accagacagt tgcaccaatg cttctgcttt catcagcatg atgtcagtaa tgcgataaaa
    18841 tatccagtta gatgtagtta ttttgaacga ataagggaaa gcgcttacgt cggaaattct
    18901 atgtcctagg tatttaaata tttgatactg tcccgcctga gtagctttcg taactataaa
    18961 atctgacttc cgttgatctg tttccggaaa aacagaagta gttgtggcat acgatgttgt
    19021 agcaatcaac ttacctacag cagtctgacc atataaattt gtaagcatat catttttgtt
    19081 gtccgaagaa aattgcaact caaaaatact ttcggaagaa tttccatttt cgaaaattat
    19141 cgacgatacg gaagaattag ataacgtgat ggctgaagac gcactgctaa acatttcatt
    19201 caccaactga tatttggggc gtacagtaat tgcacccgaa taacttattt gagtttctgt
    19261 ttcatttatc agtttatcgc agtattcaat acattttcca tagttctgcc gccacaagta
    19321 aacatcagcc aatatagcac gaatagcatc ctgtgtgatt ctacctttgg ttgcacttac
    19381 agtagggtaa gatttaagtg cccattgttc tgcttggagc aagtcatttg taatattatc
    19441 aagtacttcg tccggtggag tttgtttgat caataaattc tgagcattac taacggttgc
    19501 ctcggtcgaa taagggatgt ctcgataggt tcgaaccaga taaaagtaac acaatgcacg
    19561 aatagcatac acctcagcct cacgggcctg caaatctttt tccgaaaagt ttggatcaat
    19621 atgcaccaca tcaggagcat attttaaaac agtattacaa taattaatta cggtgtaaaa
    19681 cgatttccaa gaacaataac cattcgttgg aagtatgttt acgttattaa tttgttttat
    19741 gtcatcatct gcactggtat tagctataac attatcgccc cttagttcac cccataatat
    19801 aactcttgac ataaaatcat cttcctgcat agcacaataa catgccctca caacggcatc
    19861 tacatcggac tctttcttcc agaaatcatc aagtaataaa tcactttcag gcttcttatc
    19921 aagaaaatca ttgcaacctg ttgccaggaa cagcaggctg agtgtaaaaa gtatatattt
    19981 aatatttttc attttattga tatgtgtaat tttaacttca aagcattaga actggagtga
    20041 tagaccagct gtgaacgatt gaggacgagg tgtctgattt ctatcctgac tcacacccca
    20101 cgaaccataa ccaacttctg gatccactcc agaatattta gtaaaacaag ccaggttgta
    20161 aagagtgaaa tagaacgaag ccgcactaat ggaaaacctt gataaaaatt tacttggtaa
    20221 caaataatta aacgaaatct gattaatacg ccaaaacgaa ccatcctcaa catacctatc
    20281 gcttcccaaa aagttccggt tgctattgct tccattcata gcccgtggat agtctgtttg
    20341 gtctccttct tttctccaac gccagtttat cgaactacac tgattattgt tggaaaacat
    20401 attttcggca ttcatacgtc caatatttac aattttgttt ccgtaacgga aaaccgagta
    20461 tatattaaca gacaaacgag cataattgaa tttcaatccc ataccaccgt taaacttagg
    20521 atttgagttg cccaaataaa ctatatctaa ctggttaata ttcccgtcat gatttatatc
    20581 ttcgtagata gcatctcctc cctgaaaagc catctggcta ctggttccat atgcaaaata
    20641 cataggtacc ggtttacctt cagagttgta aataatcttt ccggcagcgt tacgagcaat
    20701 aggagcagtt cccaaagtat aattgctctc aaccaatcgc ggattatcag cactgtattg
    20761 ataaacaccc ttgtatttaa acccataaat tgagcccagt gagttattca attgcaatct
    20821 cgacatgtaa gagccattct gaaaatcata atcagcgttg tatgatttta atataatgtc
    20881 atctaaattc aaaactacat tacgactatt ggaaaagtta acattacaat cgacagagaa
    20941 atcgcctgct tttataaact tgtttgcatt caggtaaagc tcccagcctt tattatttac
    21001 agaccctaca ttatcccagg agtaagtacc aaaaccagaa gatgtcggta ttgcaacatc
    21061 cttgttcaac aaatcgtttg ttgttttatc ataataatta aagtgaacct caaatctatc
    21121 gtctaaaaag cctaaatcaa ctcctgcatt tttatctgtt accgtctccc aacgtaaatc
    21181 gtcaagacgt acactcagag gtcgtattga accaccgtcc acataagtat tccaaactcc
    21241 gtatctacta aaatgcaggt actcatcttt tggtggatta ccggtaacac ctgtacttaa
    21301 tctgacagcc aacatactta accatttacg ggtaggtgtc ataaactcct cgtcaatcac
    21361 attccaacga agtgctaaac ctccaaagtt tccgaatctg cgttttggac caaatttcgt
    21421 acttccctcc cgacgaaacg taaaatctac attgtatttt gacttgtaag aatagtgtga
    21481 actaaaagtt gctgacatcc cggcaccata accggttgaa ctactcatat cagaaataaa
    21541 acttccggcc gtcgggctcg taatcccttt gggcaatcca taagaagttt cggactgacc
    21601 aactgacgac gaataacgaa tttcagcaga tgcataggta gatagtgtat gatcagaatt
    21661 tgcgaatttg ggcatccatt gcatttccac tcttcccgtt accgaatttc cattactatt
    21721 accgtaattg gttttattca tacttccatc tgtccaaagt gcagtagata attctctcgg
    21781 aagaaaagca taacttgtgt tgttgctgat atcgaaattc accaatcctt ttagctgaag
    21841 tagttgacga tcttcccggg gcaaaatatc atactgcaac cggaatgttg gtattaaccg
    21901 aaaacttttc acattattta tagcctcata agccattgca accggatttg tcaactttcg
    21961 ttgatcgtca agagctgagt tatatctacc gtttacattc tgtggcataa gataataatc
    22021 gcttgaagac actccatctt catattcacg ataaatggcc atatttggca tcttctgata
    22081 agcaactcca agcaaattat tgttataatt tttttgctcg ttagtataag acaccgacat
    22141 ctcgctctga aacaaaatac gatcagaaac attataactc aaatccatac gagtggtaaa
    22201 acgatccaga ttctgaccta ttatacttcc cttttcatta tagtatcctc ccgatatata
    22261 aaacgttgcc ttttctccac ctcctctaag tgttagataa tgatcgttta caataccggt
    22321 tgttttcacg gccgacaccc aatcggtatt attgttatac atcctccaat ccggaaaaac
    22381 tgcatcgtta cggatatagt taaactcatt aatgtccgaa gttctatcgc tttgtttcgg
    22441 attgaaatag gcctctttca aaaacatggt atattggtca ccattaagca ttttcatccc
    22501 ttcccgctga gttttggctg ataaacgata tgtataggtc aatcggggtt tacctcgcat
    22561 ccctttttta gtccggattg atataactcc attcgcacct ctcgaacccc agcgggccga
    22621 tgcagcacca tctttcatca cattgatatc ttcaatatca tcaacattga tagagagcag
    22681 gttggcaaaa ctttcgttat ttgcattcac gaaatcgaaa ttatccgaat tcggggcatc
    22741 aaatatcagg tcgtttacca caatcaaagg cgtaacattt gcattgattg aagcagtacc
    22801 ccttaaacgc attgtagaac cggcacctaa gtcgcccgaa ttggagataa catccaagcc
    22861 agcaatctgt ccttgcaatg cttcatcaat agaggctacc gataagtttt caaaatcagc
    22921 ctttaatgtc tgcatagcca ttgagttttc ccttacgggt atatttattc ccccggcatt
    22981 taccaacttt ttccctttta tctccactac gtcaattgaa tgacttgcat cctcaagcaa
    23041 tatggaaaat tttctttttg ccccaattgc aacaattgtg cttttatatc ccacataagt
    23101 tatttgcaac ttattggccg ggtttttaat tttaagcgaa aaattaccat ttatatcggt
    23161 taaagttcct gacatgatac gatttgtagc atctacttca cggatattca caccaatcaa
    23221 agctccatct gttttagatt gtacgctccc aactataact atactagcag attgctgagc
    23281 acaaatcacc tggaaactac ttaaaatcgc tataatcaat atcgttaata ctcttctcat
    23341 atattagttt aatgtattat tcatcttctg attttcttct taacctgcga cttattattt
    23401 gccagcattt catattctcc ctcgaaatac aaacatttgt caacttgatg tataactaca
    23461 tacgatgacg tttctattgt agtagctttg gataagtcaa gaatattgaa cttgaaatcg
    23521 cgagccataa tattgtagtt ccct
//
LOCUS       DATDNM010000193         2015 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1413623, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000193 DATDNM010000000
VERSION     DATDNM010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1413623"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(127..1599)
                     /gene="proS"
                     /locus_tag="VI413_03340"
     CDS             complement(127..1599)
                     /gene="proS"
                     /locus_tag="VI413_03340"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007656038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEY6913687.1"
                     /translation="MAKELTSRSENYSQWYNDLVIKADLAESSAVRGCMVIKPYGYAI
                     WEKIQAELDRMFKETGHVNAYFPLFIPKSFLSKEAEHVDGFAKECAVVTHHRLMADPN
                     GKGLIVDPDAKLEEELIVRPTSETIIWSTYKNWIQSYRDLPILVNQWANVVRWEMRTR
                     LFLRTAEFLWQEGHTAHATEAEAVEEARKMLEVYADFSERFMAVPVLKGVKSANERFA
                     GALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVTFLDKNNKQDYVWATSWGVSTR
                     LMGALIMTHSDDNGLVLPPNLAPFQVVIVPIYKNDEQLTAISEKVAEITAKLKALGIS
                     VKFDNNDNKKPGWKFAEYELKGVPVRLAMGARDLENGTVEIARRDNLSKETVSIEGVD
                     TYIAQLLKDIQANIFQKAFDYRASVTRNVDSYDEFKVEIEKGGFLMCHWDGTPETEEK
                     IKEDTKATIRCIPLNGDMTPGVCMVTGKPSAQRVVFARAY"
     gene            complement(1872..>2015)
                     /locus_tag="VI413_03345"
     CDS             complement(1872..>2015)
                     /locus_tag="VI413_03345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY6913688.1"
                     /translation="EVFNKPFLTQQEGRYKGTPLRTHAGGAWTNGYSDHYPTLIYLVK
                     EKK"
BASE COUNT          570 a          418 c          383 g          644 t
ORIGIN      
        1 atgaaaaaaa aatcaagttc aactaaataa taatttcgaa aatttatgat tttggccggg
       61 agaattttac tcataaaaaa caggcctcac aaaatgtgaa gcctgttttt tatagacaat
      121 tgatttttag tatgctcttg caaaaaccac gcgttgtgct gatggtttcc ctgttaccat
      181 acaaacgccc ggagtcatgt cgccattcaa tggaatgcaa cggattgttg ctttggtatc
      241 ttctttgatt ttttcttctg tttcaggagt tccatcccag tggcacatca ggaatccacc
      301 tttttcaatt tccactttga attcgtcata cgaatctaca ttgcgggtta ctgaagcacg
      361 gtaatcgaaa gctttctgga aaatattcgc ctgaatgtct ttcagcaatt gggcaatgta
      421 agtgtcaaca ccttcaattg aaacggtttc tttgcttaaa ttgtcgcgac gggcaatttc
      481 tacagttcca ttctccaaat cgcgggcacc cattgccaaa cgtaccggaa caccttttaa
      541 ttcatattcg gcaaatttcc aacctggttt tttattatcg ttattatcga atttaacgct
      601 aatacctaat gctttcaact tagcagttat ttctgccact ttttcgctga tagcagtcag
      661 ttgttcatcg tttttataaa taggcacaat aaccacctgg aatggcgcaa ggtttggagg
      721 caataccaat ccgttgtcat cggagtgggt cataataagt gcgcccatca aacgggtaga
      781 aacgccccag gaagtagccc aaacataatc ttgtttgttg tttttatcaa ggaatgttac
      841 atcaaatgct ttagcaaagt tttggccaag gaaatgtgaa gttcctgcct gcaatgcttt
      901 tccatcttgc atcaaagctt caatacagta tgtatccaat gctcccgcaa agcgttcgtt
      961 agccgatttt acacctttta gtacgggaac agccataaag cgttccgaaa agtcagcata
     1021 aacttcgagc attttgcggg cttcttcaac ggcttctgct tcagttgcgt gagctgtgtg
     1081 tccttcttgc cataggaatt ctgctgtacg caggaataaa cgtgtgcgca tttcccaacg
     1141 aaccacattt gcccattgat taaccagaat aggtaggtct cgatacgatt gaatccagtt
     1201 tttataagtg ctccatataa tggtttcgga ggtaggacga acaatcagtt cttcttccag
     1261 tttagcatct gggtcaacaa tcaggccttt tccattaggg tctgccatca aacggtgatg
     1321 agtaaccaca gcacattctt ttgcaaaacc atctacatgc tcggcttctt tgctcaaaaa
     1381 tgatttagga ataaacaaag gaaaataggc gtttacgtga cctgtttctt tgaacatacg
     1441 atccagttct gcctgtatct tttcccaaat ggcgtaaccg taaggtttga taaccataca
     1501 accacgaacc gctgagcttt cggccaggtc agctttgatt accaaatcgt tataccactg
     1561 tgagtagttt tcgctgcgcg aagtcaattc ttttgccata aatttttttg ttgaaatcaa
     1621 tagagtaatt atttccttta acctgaaact gccagaaaaa aatctgtaaa gatcagttta
     1681 attcagatta aaacagaatt tgttatctgc cggaaatttt tcggagtgca aagataatca
     1741 tttccagcaa attttctttt acaatactat agaaaataag ccggattgaa ggcaatgata
     1801 tataacgaaa taaatccatg caaacacttt tgagtttaca tggatttatt tcgttttggt
     1861 ttataaaaat tctacttttt ttctttcacc agataaatga gggtaggata gtggtcgctg
     1921 taaccgtttg tccatgctcc gccggcatgt gtgcgcaaag gagttccttt gtatctgcct
     1981 tcttgctgcg taaggaaagg tttgttgaaa acctc
//
LOCUS       DATDNM010000194         2287 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_665316, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000194 DATDNM010000000
VERSION     DATDNM010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_665316"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..541
                     /locus_tag="VI413_03350"
     CDS             <1..541
                     /locus_tag="VI413_03350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913689.1"
                     /translation="YEIQRVALSIIGNPYSVYPLAFLFPVHNDCGTDCSLFANPYPIP
                     AEPVKKKEPKANQCPENNKISLGVAICSLAFDCESIEFGCSAGAALSAKRNFKNKSTT
                     LFIGGGGQLNLIGASAGMKVGATITRSDSGDTDVGGKFEMNAAVGSPGAQAGKSYSMT
                     ATVMEGAKSKMTNVMKLGF"
     gene            654..1352
                     /gene="ric"
                     /locus_tag="VI413_03355"
     CDS             654..1352
                     /gene="ric"
                     /locus_tag="VI413_03355"
                     /inference="COORDINATES: protein motif:HMM:TIGR03652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair di-iron protein"
                     /protein_id="HEY6913690.1"
                     /translation="MSKESNFNEMTVGQIVTADFRAAGIFREAGIDFCCGGDKSLEVA
                     CNEKKMDKAVVLDQLNELTKTEMAPNLNFNEWELGFLADYIVNTHHKFVQKSLPDVLF
                     YTRKIATVHGDNHPELIEIAYLFEEINRELLQHLQHEEEVLFPAIKEMLKTNRKEEKE
                     TIVSEITRMKGEHEFAGEAMDKINRLSDNYKVPEDGCGSYKLAYTMLNRFEDDLHVHV
                     HLENNILYPKALQL"
     gene            1381..1929
                     /locus_tag="VI413_03360"
     CDS             1381..1929
                     /locus_tag="VI413_03360"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY6913691.1"
                     /translation="MDTATQNLENDHINILKLTDIMERMVMNCSTDLPDMEMVVNLIR
                     QYADSFHHAKEENLFFPLLVEKGFSNEQGPVSVMLHDHDEGRKFTEGMAKGIENYKRT
                     GDDSILPDIYLNMQGYIDLLRAHISKENNVLFKMADRLLSSVEQQKLLDAFIGVETND
                     YGNDKIQQFVIDIEGLEAIYMP"
     gene            2017..>2287
                     /locus_tag="VI413_03365"
     CDS             2017..>2287
                     /locus_tag="VI413_03365"
                     /inference="COORDINATES: protein motif:HMM:TIGR01409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEY6913692.1"
                     /translation="MDGYESNRREFLKKLGLIAGATALTATGVSGVADIITEKKEKFK
                     LTPEQDKFMVKYEKWLDEFHDMAKFQKNDPEHLENNKRLMALSDEA"
BASE COUNT          755 a          381 c          540 g          611 t
ORIGIN      
        1 ttatgaaatt cagcgggtag cattgtcgat tatcggcaat ccttatagtg tttatccttt
       61 ggcttttcta tttcctgtgc ataacgactg tggcaccgac tgttcgttat ttgccaatcc
      121 gtatccgatt ccggctgagc cggtaaagaa aaaggagccc aaagccaacc aatgccccga
      181 aaataataaa atatcattgg gtgtggccat ttgcagcctg gctttcgatt gcgaaagtat
      241 tgaatttggg tgttctgcgg gcgcagcttt atctgccaaa aggaatttta aaaacaagag
      301 taccacgctt ttcatcggcg ggggcggtca gttaaatctt atcggagcca gtgccgggat
      361 gaaagttggt gcaacaatta caagatcgga cagcggtgat accgacgtag gcggcaagtt
      421 tgaaatgaat gcagctgtgg gtagcccggg tgcgcaggca ggcaaaagct attcgatgac
      481 ggccaccgta atggaaggag ccaaatcgaa aatgaccaac gtaatgaaac tgggatttta
      541 atgattcaaa gttgtcataa taccttgaaa atattgaaag aattgcacat tgtttgaaca
      601 aaatctgacg attgaagtta tagataaatg aattaatttt taatgtgaat aacatgtcaa
      661 aagaatcgaa ctttaatgaa atgacggtag gtcagatagt gaccgccgat ttcagggcag
      721 ccggtatttt cagggaggca gggattgatt tttgttgtgg aggggataaa agcctggaag
      781 tggcttgcaa tgagaaaaaa atggataaag ctgtggtgct ggatcaactg aatgaactga
      841 caaaaaccga aatggctcca aatctcaact ttaatgaatg ggagttggga tttttggctg
      901 attatattgt aaatacgcat cataaattcg ttcagaaaag tttacccgat gtgttgtttt
      961 atacacgtaa aatagcgaca gtacatggcg acaatcatcc agaacttata gaaatagctt
     1021 atctctttga agagataaac cgagaactgc tacaacattt gcagcacgaa gaggaagtgc
     1081 tttttccggc tattaaagaa atgctgaaga ctaaccggaa agaggaaaaa gaaacaatag
     1141 tttcggaaat aacccgcatg aagggcgaac atgaatttgc cggagaggct atggataaaa
     1201 tcaacaggtt atcagataat tataaggttc ctgaagatgg ttgtggttcg tataaactgg
     1261 catataccat gcttaaccgc tttgaagatg acctgcatgt acatgtgcat ctcgaaaaca
     1321 atatccttta tcccaaagct cttcaactat gagcgatatg aatttttaga acagaatatt
     1381 atggatacag caacacaaaa tcttgaaaat gaccatataa acatcttgaa acttactgat
     1441 ataatggaaa gaatggtgat gaactgttca actgatttgc cggacatgga gatggtagtg
     1501 aaccttatca ggcagtatgc tgattcattc catcatgcca aggaagaaaa cctgtttttc
     1561 ccgcttctgg ttgaaaaggg tttttcgaat gaacaaggac cagtgtcggt aatgcttcat
     1621 gaccacgacg aggggcgtaa attcaccgaa ggaatggcca aaggaattga aaactacaaa
     1681 cgaaccggcg atgattcgat attgcctgat atttacctga atatgcaggg atatattgat
     1741 ttactgcggg cgcatattag caaggagaat aatgtgcttt ttaaaatggc agacagattg
     1801 ctgagctctg tggagcaaca gaagttgtta gacgcattta tcggcgtgga aacgaatgat
     1861 tatggcaatg ataaaattca gcagtttgtt attgatattg agggtctgga agctatatac
     1921 atgccgtaat tgacccctga gtttgcaggt gctgataaat tgcacaaata ttgcacaata
     1981 attgaaaacg aatatttata actaaaaact gataatatgg atggatacga atcaaaccgt
     2041 cgggaatttt taaaaaaact ggggttgata gccggagcta ctgccctaac agccacaggt
     2101 gtttcgggtg tggcagatat cattaccgag aagaaagaaa aatttaaact aactcctgag
     2161 caggataagt ttatggttaa gtatgaaaaa tggctggatg aatttcatga tatggctaag
     2221 ttccaaaaga atgatccgga gcatttggaa aataataagc ggttgatggc actatctgat
     2281 gaagcaa
//
LOCUS       DATDNM010000195         2776 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_772320, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000195 DATDNM010000000
VERSION     DATDNM010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_772320"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..563)
                     /locus_tag="VI413_03370"
     CDS             complement(<1..563)
                     /locus_tag="VI413_03370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005643782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEY6913693.1"
                     /translation="MRIVFMGTPDFAVESLRILVENKYDVVGVITMPDKPAGRGHKMQ
                     YSAVKQYALEQNLRLLQPEKLKDEAFLEELQSLQADIQIVVAFRMLPEVVWNMPKHGT
                     FNLHASLLPQYRGAAPINWAIINGEKETGATTFFLTHEIDTGKIILQEKIQIVESDNA
                     GTVHDKLMTMGAGLVKKTVDMLIEGKT"
     gene            complement(610..1482)
                     /locus_tag="VI413_03375"
     CDS             complement(610..1482)
                     /locus_tag="VI413_03375"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEY6913694.1"
                     /translation="MKIAVFGNIYRTVILSHIELLFNYFKDKDVTLLLDSVLYEFAHD
                     NDKCCSGRTEIITDNDFEADLALSIGGDGTFLNTAARIGRKNIPILGINTGRLGFLAD
                     VASEDILVALDAILDNKYIIQERSLLHVETSDGTTFDYPYALNEISVLNQDSSSMISI
                     TASVNGEMVHTYHADGLLVSTPTGSTAYSMSVGGPLVVPEAENFILTPIASHSLNVRP
                     LIVPDTWTFELEVHSRSQCYLVALDGRSKVLELTTKLRITKADYTIKIIKQINHTFFD
                     TLKNKLLWGVDKRN"
     gene            1821..2534
                     /locus_tag="VI413_03380"
     CDS             1821..2534
                     /locus_tag="VI413_03380"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEY6913695.1"
                     /translation="MTKLSVNINKIATLRNARGGNTPNVCQVALDCERFGAHGITVHP
                     RPDERHIRYQDVWDLKPILKTEFNIEGYPSPEFIKLVKSVKPHQVTLVPDPPEAITSS
                     AGWDTVTHLEFLKEVVADFQSVGIRVSIFVDTDLKNIEYAAKTGTDRVELYTEPYATN
                     YPADREKAAAPFIEAAKLAKKLGLGLNAGHDLSLENLAYLHAMIPWLDEVSIGHALIA
                     DALYFGLEDTIKRYKKQLE"
BASE COUNT          834 a          543 c          529 g          870 t
ORIGIN      
        1 tctgtttttc cttcaatcag catatcaaca gttttcttta ccaatccggc tcccattgtc
       61 atgagtttgt cgtggacggt tccggcattg tcgctttcaa caatctggat tttttcctgc
      121 aaaataattt tcccggtatc aatttcatga gtcaggaaaa atgttgttgc acccgtttct
      181 ttttctccat tgataatcgc ccaattgata ggggcagctc ctctgtattg cggaagcaat
      241 gaggcatgca ggttgaaagt tccgtgtttg ggcatattcc aaaccacttc gggcaacatg
      301 cggaatgcaa cgacaatttg tatatcagct tgcaaacttt gtaattcttc caaaaaagct
      361 tcatctttga gcttttccgg ttgcaataac cgtagatttt gctcaagagc atattgtttt
      421 actgccgaat actgcatttt atgtccgcgt ccggccggct tgtcaggcat agtaattact
      481 ccgacaacat catacttgtt ttctaccaat attctgaggc tttccaccgc aaaatccggt
      541 gtgcccataa aaactattct catattcttt aattagtaaa ttgtcaaatc aatacataat
      601 cacatttaat caattccttt tgtcaactcc ccacaataat ttattcttca atgtgtcaaa
      661 gaaagtgtga ttaatttgtt tgataatttt tattgtgtag tcagcctttg ttattcttaa
      721 tttcgttgtt agttctaata cttttgagcg tccgtccaaa gctactaaat aacactggct
      781 gcgactatgt acttctaatt caaatgtcca ggtgtcagga actattaacg gtcggacatt
      841 taggctgtgc gaagcaatgg gtgtaagaat aaaattttcc gcttcgggta caacgagcgg
      901 tcctccaacg ctcattgagt aagctgttga ccccgttggc gtagaaacga gcagaccgtc
      961 agcatgatag gtgtgtacca tttcgccgtt tacactggct gtaatgctga tcatggacga
     1021 actatcctga tttaaaaccg aaatttcatt cagggcataa ggatagtcga aagtggttcc
     1081 gtctgaggtt tccacatgaa gcaacgatct ttcttgaata atatatttgt tgtccaaaat
     1141 ggcatcaagg gcgactaaaa tatcttcgct ggccacatct gccaagaaac caagacgtcc
     1201 tgtattaatc ccaagtatgg gtatgttttt ccgcccgata cgggcagcgg tattcagaaa
     1261 agtgccatcg ccaccaatgc ttaatgccag atcggcttcg aagtcattgt ccgttattat
     1321 ttctgtacgt cccgagcagc atttgtcgtt atcatgagca aattcataaa gaacactatc
     1381 cagcaggagt gttacatctt tatctttaaa ataattgaat agtaactcaa tatgtgacag
     1441 aatcacggtt cggtatatat ttccaaaaac ggctattttc atacggggaa cattttcttt
     1501 ttgatgacaa aatctaaaat ataattgaac cgaaagccta aataatacct tgaaaatgat
     1561 taaaaaaaaa tgaaagataa ctgtctcgaa gtctccttct gtttttttta gctatttttg
     1621 tagcaaaata tatttagtgc cataaacact ttgcaaagga actaaatgaa aatgaaacct
     1681 gcaagaaaga acgaaagttt gatgatcggt ttgaaattct gattcttaaa gcaaatttac
     1741 ctatttcgtt gaattcctgt gtcaatcaac agggttcatt taactttgaa atatttatta
     1801 atgactgtaa tcccaaaata atgacaaaac taagcgtaaa tatcaataaa atagccacat
     1861 tacgtaatgc tcgtggtgga aatactccga atgtatgtca ggtagccctt gattgtgagc
     1921 gatttggagc gcacggaatt acggttcatc ctcgtcctga tgagcgtcat atccgttatc
     1981 aggatgtgtg ggatttaaag cctatcctga aaacagaatt taatattgaa ggttatcctt
     2041 cgccggaatt tatcaaactt gttaagtcgg tcaaaccgca tcaggtaacg cttgttccgg
     2101 acccaccgga agcgattacg tcaagtgccg gttgggatac tgtaactcat ttggaatttc
     2161 tgaaagaagt tgtagcagat tttcaaagcg tgggtattcg tgtttctatt tttgtagata
     2221 cagatttgaa aaacatagaa tacgccgcaa aaacgggtac cgaccgggtg gaattgtata
     2281 cagaacctta tgctaccaat taccccgcag atcgtgaaaa ggctgctgca ccctttatcg
     2341 aagctgcaaa actcgctaaa aaacttggtc tgggactgaa tgcaggacat gacttaagcc
     2401 tcgagaacct ggcttatttg cacgccatga ttccctggct cgatgaagtt tctattggcc
     2461 acgcacttat tgccgatgca ttatattttg gattggaaga cacaataaag cgttataaaa
     2521 agcagttaga atagatgtgt caaatttgag gtatgaattt tgctgacttc aaaaatcaac
     2581 aaaataaaat tcaaaaataa tcaattactg aaatgactta tacaatcact aatttaccaa
     2641 ccaatcaggg aaataaaaac gtgagaaaat caagtttata tggtttgctt ggctctgcat
     2701 tatcttgcat aatattattt ttgataatgt ggttttatgt tatgccttat acaacaatcg
     2761 ctcagcctgt tgagga
//
LOCUS       DATDNM010000196         2387 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_559623, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000196 DATDNM010000000
VERSION     DATDNM010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2387
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_559623"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..166
                     /locus_tag="VI413_03385"
     CDS             <1..166
                     /locus_tag="VI413_03385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004302161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HEY6913696.1"
                     /translation="ADDVYENFLIDLFENQKDAIEVIKLKEIMSELEKATDAAEHVGK
                     IIKTIIVKYA"
     gene            181..1224
                     /locus_tag="VI413_03390"
     CDS             181..1224
                     /locus_tag="VI413_03390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEY6913697.1"
                     /translation="MTLLITVIALALIFDFINGFHDAANSIATIVSTKVLTPFKAVLW
                     AAAFNFVAFFIAKYFSGFGIANTVSKAVIEQYITLPVIFSGIVAAIMWNLATWWLGIP
                     SSSSHTLIGGFAGAAVMSTIIANGYTTSGFEAIKSDVIIKIASFIILAPLIGMIISTL
                     ITILILYIFKRVNPHKANQWFKKLQLVSSGLFSIGHGLNDSQKVMGIIAAALYAAYHK
                     NGLDVGIHDIKSIPDWVAFACFGAISIGTMSGGWRIIKTMGSRITKVTPLEGVAAETA
                     GAITLYITEILKIPVSTTHTITGSIIGVGAVKRLSAVRWGVTRSLMIAWILTIPVSAA
                     LAALIYFFFGTMV"
     gene            1442..>2387
                     /locus_tag="VI413_03395"
     CDS             1442..>2387
                     /locus_tag="VI413_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEY6913698.1"
                     /translation="MKKLFLALTLLASFLFSIETITAKTNDSFQKQADSKNKVPKNKL
                     KKHASIAVQFTESEMKRFPKAWQLDHGKRPFFGYAQGVGCSAMLKLWKATGDTRYFNY
                     VKEYADSLIKTNGDIVLYDRSSYNIDYVNSGKLLFDVYKQTGDSKYKLAMDNLIDQLK
                     NQPRTSDGGYWHKKIYEHQIWLDGIYMASPFMAQYGSTFNQPLWIDEAINQITICHLH
                     THDSKTGLYYHAWDESKSQRWANPQTGLSPNFWGRSIGWYFMAVVDALDFVPANHPRR
                     AELISIIQGLADALPNYQRKGLWYQVIDQPERTGNFPEA"
BASE COUNT          765 a          467 c          452 g          703 t
ORIGIN      
        1 ggctgatgat gtttatgaaa acttccttat cgacttattc gaaaatcaga aagatgctat
       61 cgaagtaata aaactcaaag aaataatgag tgaactggaa aaagcaactg atgcggcaga
      121 gcacgtaggt aaaattatca aaacaattat tgttaagtac gcataacaac ttaaacagaa
      181 atgacgctat taataacagt aattgccctt gcattgatat ttgactttat caatggtttt
      241 catgatgcgg ccaattcaat tgccaccatc gtctctacaa aggttctgac gccttttaaa
      301 gctgtgttgt gggcagcagc tttcaacttt gttgcatttt tcattgccaa gtattttagc
      361 ggatttggta ttgccaatac agtttcaaaa gctgttatag agcaatacat cacactgccg
      421 gtaatttttt cgggcattgt tgcagctatt atgtggaatt tggctacatg gtggttagga
      481 atcccttcat cttcatcaca cacacttatc ggagggtttg caggcgcggc agttatgagt
      541 acaataattg ccaatggcta tactacaagt ggttttgaag ctattaaatc tgatgtaatt
      601 attaaaattg catcgttcat tatattggca ccacttatcg ggatgattat ctccacctta
      661 attaccattc tgatattata catattcaaa agggtaaatc cgcacaaagc caaccaatgg
      721 tttaaaaagc tacaactcgt ttcatcaggg ctgttcagta ttggtcacgg tttgaatgac
      781 tcacaaaaag ttatgggtat catagcagca gcactttatg ctgcttatca taaaaatggt
      841 cttgacgttg gtattcatga tattaaaagc attcctgact gggtcgcttt tgcatgtttt
      901 ggtgctattt ctattggaac tatgtcgggc ggttggagaa ttataaaaac catgggttca
      961 agaatcacca aagtaacacc actcgaaggt gttgctgcag aaacagcggg tgctattact
     1021 ttgtatatca ctgaaatttt gaagatcccg gtaagtacaa ctcacaccat tacaggttct
     1081 attattggtg ttggagcggt aaaacgtctt tcggcagtac gttggggtgt aacccgaagc
     1141 cttatgattg cctggattct gaccataccg gtgagcgcag ctttagcggc cctaatctat
     1201 ttcttctttg gaacaatggt ataactataa ataattttta tcaagaacaa acaaggcgag
     1261 taggtcatca ctcgccttgt ttgcatcata gtaccaaagt tacaaaagaa ataaatctta
     1321 tttattatgc ttaaatgaca aaacagacaa tataaccatc aaaaaatacg attcccggaa
     1381 actcagttca aggtattttt gtaacatcaa ataaattaca aatcttgaat actgaagata
     1441 aatgaaaaaa ctctttctcg cactcacact cctcgcttct tttctttttt ccattgaaac
     1501 aattactgca aaaacgaatg attcttttca gaagcaggca gattcaaaaa ataaggtccc
     1561 aaaaaataaa ttgaaaaaac acgcatcaat tgcggttcaa tttactgaat ctgaaatgaa
     1621 acgttttcca aaagcatggc aactcgacca cggaaagcga ccattttttg gatatgccca
     1681 gggtgttggt tgttctgcca tgctgaaact atggaaagcg accggcgaca cccgctactt
     1741 taattatgta aaagaatatg ccgacagcct tatcaaaacc aatggagaca ttgttttata
     1801 cgacaggtca agttataata tcgactacgt caattccggt aaattactgt ttgatgttta
     1861 caaacaaacc ggtgattcca aatacaaatt ggccatggac aacctaattg accaactcaa
     1921 aaaccaacca agaacttcag atggcggata ttggcataaa aaaatatacg aacatcaaat
     1981 atggttagac ggcatttata tggcttcgcc ttttatggct caatacggca gcacattcaa
     2041 tcaacctcta tggattgacg aagcaattaa tcaaatcaca atttgccatc ttcataccca
     2101 tgattctaaa acaggtttat attaccatgc ctgggacgaa agcaaaagtc agcgttgggc
     2161 aaacccacaa accggccttt cgccaaattt ctggggacga agtattggtt ggtactttat
     2221 ggcagtagta gatgcattgg attttgttcc ggctaatcac cctcgccggg ctgaattaat
     2281 ttcaattata cagggattag cagatgctct tcccaactat cagcgaaaag ggctttggta
     2341 tcaggtaatt gaccaacctg aacgaaccgg caattttcct gaagcgt
//
LOCUS       DATDNM010000197         2052 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1519979, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000197 DATDNM010000000
VERSION     DATDNM010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1519979"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VI413_03400"
     CDS             complement(<1..387)
                     /locus_tag="VI413_03400"
                     /inference="COORDINATES: protein motif:HMM:NF012481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin domain-containing protein"
                     /protein_id="HEY6913699.1"
                     /translation="MSKALIIYHSKRGTTKKFSNEIAEFYKQNGIQTKVIPVNDFKPS
                     LLEGVDHLLLGCWTQGHLIFNQHPAKEWVDFAGKLPVIFDKKIVLFTTYKVATGSMFR
                     KMKEQLVFDSNCLKLELKSRNGRLNSL"
     gene            complement(646..1740)
                     /locus_tag="VI413_03405"
     CDS             complement(646..1740)
                     /locus_tag="VI413_03405"
                     /inference="COORDINATES: protein motif:HMM:NF015715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEY6913700.1"
                     /translation="MEQILKIATFILNSFIHIWPYLLITIPLSVIVQLSGWSKYISKA
                     LSKNPVVSILLATAIGAVSPFCSCGVIPVIASLLIGGVPLAPVMSFWIASPSMDPEIF
                     FLSVASIGWKLSVWRLAATFVISLSAGFITQIAVNKGYFGSEILRTNSQFTSFEKQQS
                     LLSQLGNRLNKIFRKREKITVQLQATKSYSYQSQTVNCCVSADSLNLNAETINSGNSC
                     KCDDAEITNTDPFTKKLLMETWKAVFMVAKFMSLAFLINALIEFYLPKEFITNLLGGN
                     SPLSVLIAALVGIPFYTSNITALPIVSGFLSLGMSQAAALAFLIAGPVTTLPAMMAVW
                     GIVKPKVFLFYLLFSLLGAILFGYLYSFVN"
     gene            complement(1747..>2052)
                     /locus_tag="VI413_03410"
     CDS             complement(1747..>2052)
                     /locus_tag="VI413_03410"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEY6913701.1"
                     /translation="YYNSRELNGNFMIDPRYNIDFGVQYKVLKDKGMIKISVYDIFYS
                     NHTSGYSKYNNVDLDFKNTNDSRKLNVSFTYRFGKDEFKTRSNRSTASSEEQSRSTN"
BASE COUNT          635 a          411 c          374 g          632 t
ORIGIN      
        1 caagctattt agccggccgt ttcgtgactt taattccagt ttcaaacagt tggaatcgaa
       61 aaccaactgt tctttcattt ttcggaacat gcttccggta gcaactttgt aagttgtaaa
      121 cagcacaatt ttcttatcga aaattacagg caatttacct gcaaaatcca cccattcttt
      181 tgccggatgc tggttgaaga ttaaatggcc ttgggtccaa caacctaaaa gcagatgatc
      241 gactccttca agcaatgacg gtttaaaatc atttacgggt atcacctttg tttgtatacc
      301 attttgtttg tagaactctg caatttcatt actgaatttt ttagtagttc ctcttttgct
      361 gtggtaaata attaatgctt tgctcataat tttacgtttt taatgcaaaa taaatatctt
      421 atttaattgg gtgcaatttc ctgtcattga atggcatata atgccagttg aaagacggat
      481 ttatggcttt gaagttttta ctggcgagac tttttaatgt tatctgaaac aattttcgcc
      541 tcgctgcaat aagagaatta caaaaaccgc tatcatggcc aaatggcctg caatctgata
      601 cctgattccg gaatatgtat tcatttttat ttataaataa aggttttaat tcacaaaact
      661 gtataaataa ccaaatagaa tggccccaag caacgaaaat aaaagataga ataaaaatac
      721 tttgggcttt acaatgcccc aaacagccat catagccgga agcgttgtta ccgggcctgc
      781 aatcagaaat gcaagtgctg ctgcctgact catgcccagc gatagaaacc cgctgacgat
      841 aggcaaagcc gttatattgc tggtataaaa tggtatacca accaatgcag caatcaatac
      901 tgaaagtggg ctattgcctc ccaacagatt tgttataaac tctttgggta aataaaattc
      961 aatcagcgca ttaatcagaa atgccaacga catgaatttt gcgaccatga aaacggcttt
     1021 ccaggtttcc attagcagtt ttttcgtaaa tggatctgta ttggttattt cagcgtcatc
     1081 acatttacaa ctatttcctg aattaatcgt ttcagcattc aaattcaggc tatcagccga
     1141 tacacagcag tttaccgtct gactttggta cgaatagctt ttagtagcct gcaactgaac
     1201 cgtgattttt tcccgtttcc tgaaaatttt atttaaccgg ttgcccagtt ggctcagcaa
     1261 gctttgctgt ttctcaaaac ttgtaaactg cgaattggta cgaagaattt cactcccaaa
     1321 atagccttta tttacagcaa tctgggtgat aaaaccggct gacaaactga taacgaatgt
     1381 ggctgcaagt ctccataccg ataacttcca gccgatagaa gctacactca gaaagaaaat
     1441 ttcgggatcc atggaaggcg acgcaatcca gaaagacatt accggagcca acggaactcc
     1501 accaatcagc aacgatgcta taaccggaat cacgccacaa gaacaaaacg gactaacggc
     1561 tccaatagca gtggccaaaa ggattgagac aacaggattt ttgcttagcg ccttgctgat
     1621 atattttgac caccctgaaa gctgaacgat aaccgaaagt ggaatggtaa tcagtaggta
     1681 aggccaaata tggatgaacg aattcagtat aaatgttgct attttcagta tttgttccat
     1741 aatcttttag tttgtgctcc ggctttgctc ttcgctggag gcggttgaac gatttgacct
     1801 ggttttgaat tcatctttac caaaacggta agtaaatgaa acattcagtt tccttgaatc
     1861 attggtattt ttaaaatcca aatcaacatt gttgtacttt gagtatccgc ttgtgtgatt
     1921 cgagtaaaag atatcgtata ccgaaatctt tatcattcct ttatctttca agactttata
     1981 ttggactcca aaatcaatgt tataacgagg atctatcata aaatttccat ttaactcgcg
     2041 ggaattatag ta
//
LOCUS       DATDNM010000198         3958 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1734096, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000198 DATDNM010000000
VERSION     DATDNM010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3958
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1734096"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(340..2121)
                     /locus_tag="VI413_03415"
     CDS             complement(340..2121)
                     /locus_tag="VI413_03415"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913702.1"
                     /translation="MMKKHSIFAILCLLSPIANAQFSPQNSNTVSADINAAGDVSIVL
                     KNEQGEVNSKALLVNNNGTYSLAGTPNVIIPGKSADIKFADLDGDGNMDAIFNGDSNA
                     ELGKGIAMNDGTGVFTRSALDVTNATISCGFADFDNNSLMDYYVFGNGISGGAVFFQN
                     ADGTFTKDQSSFAALNLLDADVTTIDFNNDGRIDMFISGWDDNAKQRFSAIYINDGAG
                     KFAAIAQPNLIQKGYGSSVWGDVNGDGWMDLLLNGDGGADGEASSDMYRLYKNNKGVL
                     EPKATFNDYRQISVGDGARMVDWDNDGKLDIIFTGWSNTKSRQATVLFSCIDAANFVF
                     AENTLGNTDFPGVSESSIETADLNNDGRIDLLITGFNGSQASQVGKYNRNICGYYLNQ
                     SAAINVKPSTLTNLTSAIAVNGDQTTVTLSWNPATDDKTLQAALTYNLSLKNKTTGKW
                     LYNPMAVMSGTTNGWRRISAIGNVFANRKWMLNNLPEGTYEWSVQAIDANFTGGAFAI
                     ARTFIVSATGVKEVISGLILSGGKRQLFVQNTTNKLLDITVYSATGSLIKTLRSTGST
                     STSLLPGIYIVKAFDGEKTMVEKVVVN"
     gene            complement(2143..3360)
                     /locus_tag="VI413_03420"
     CDS             complement(2143..3360)
                     /locus_tag="VI413_03420"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6913703.1"
                     /translation="MKMIKATVLLFGLFSFSFAMAQYSHFDAALGLQHADITTADIDN
                     DGDLDIIASGVASEGSSLVPKSYIYMNNGGAYELQGTSKGATYYQNPVFEPDVADPTI
                     IRGGDGWFYGYGTENTWTDGVHHLVPVIKSKNLIQWQFVKDAFVSRPTWKSAGGIWAP
                     DVTYVNGRYYMFYSISTWGDANPGIGLAISNYPAGPFTDQGKIFDSSSIGVSNSIDPY
                     FFQTGTGDSIKSYIFWGSFNGIYGIELASTFKTTVGNKFKIAGNAFEASYIREKNGKF
                     YFFGSLGSCCDGVNSQYHVNVAVATSLKGPYYDKNGNTIINDGQAGSPFLSGNQSLGW
                     VGPGHNSKIVTDDAGVDYFLYHAIDISKPTLPGGATRRPLLMDKITWLNGWPEIAGGV
                     PSKGLRVAPVINN"
     gene            complement(3767..>3958)
                     /locus_tag="VI413_03425"
     CDS             complement(3767..>3958)
                     /locus_tag="VI413_03425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005846055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913704.1"
                     /translation="ELALETAFEGNRFHDLMRIALRRIKNGEGDESYLANPISAKHVG
                     SEAVIKEKLMHIDNWYIKK"
BASE COUNT         1105 a          941 c          774 g         1138 t
ORIGIN      
        1 ccgcccttat acaacaagcc cccgagtcag aataaatgat tgggggcttg ttatttttaa
       61 gtgcaggatt tagtctaacg tgagttaaat ataagcaagt gaatattttt ataaccgaaa
      121 aatatcacgg tgctctgcac cttcttgttt ctggttaatt taagttctac aaatagtatg
      181 gtgctctgca ccttatttag ggacagcgtc ccgtactatt tgtagaaaat tctagccaat
      241 cataaaaaca aaggtgcaga gcaccgtaat ataatttcgt actacattga agatcataaa
      301 agcagtaata attcagatta tgcttatatc gaactcacat tagtttacca ccactttctc
      361 caccattgtt ttttctccat cgaaggcttt tacaatatag atacccggca agagcgatgt
      421 agaagtgctt cctgttgatc tcagtgtttt aatcaaactt ccggtagcgc tgtaaacggt
      481 gatgtccagc agtttatttg ttgtattctg cacaaacaat tgccgcttgc caccactcag
      541 aataagtccc gaaataactt cttttacccc ggtagccgaa acgataaacg tgcgggcaat
      601 ggcaaatgct cctcccgtga agttggcgtc gatagcctgc acggaccatt cataggttcc
      661 ttccggcaaa ttattgagca tccatttccg gtttgcaaat acgttgccta tagccgatat
      721 ccgtctccag ccatttgttg tcccgctcat cacggccatc gggttataga gccatttgcc
      781 ggtagtttta tttttcaacg acaaattgta ggtgagtgct gcctgcagcg ttttatcatc
      841 cgttgccgga ttccaactca gcgtaacggt tgtttggtcg ccatttacag caatcgcgct
      901 tgtcaggttt gtcaacgttg agggtttcac atttatagcg gctgactggt tcaggtaata
      961 cccgcaaatg ttacggttat acttgccaac ctgactcgcc tggcttccat taaatccggt
     1021 aataagcaaa tcaatgcggc cgtcgttgtt caggtcggca gtttcgatgc tgctttcgga
     1081 aactcctggg aaatcagtat taccaagcgt gttttcggca aacacaaagt tggcagcatc
     1141 gatacacgag aacaacaccg tggcctggcg gcttttggta ttgctccagc cggtgaagat
     1201 aatatccagc tttccatcat tatcccagtc taccatgcgc gcaccatcgc caacacttat
     1261 ctggcggtaa tcgttgaaag tagcttttgg ctcaagcacc cctttattgt ttttatataa
     1321 ccggtacata tccgaactgg cctcgccgtc ggcaccacca tcgccgttga gcagcaaatc
     1381 catccaaccg tcgccattca catctcccca cacggacgaa ccgtatcctt tttgaataag
     1441 gttaggttgt gcgatagctg caaatttacc ggctccatcg ttgatataaa tagcagagaa
     1501 acgttgcttt gcattatcgt cccacccact tataaacatg tcaatccggc cgtcgttgtt
     1561 gaagtctatc gttgtaacat cggcatcaag cagatttaac gccgcaaaag aggattggtc
     1621 tttggtgaaa gtgccgtcgg cattttggaa aaagacagcg ccaccactta tgccgttgcc
     1681 aaaaacgtaa tagtccatca aactgttatt gtcgaaatca gcaaatccgc aggaaatagt
     1741 agcgttggtc acgtccagtg ccgagcgggt aaacaccccc gttccatcat tcatggcaat
     1801 tcctttgccc agttcggcat tgctgtcgcc attaaaaatg gcatccatat ttccatcgcc
     1861 atccaggtcg gcgaatttaa tatcggccga ctttcccgga ataatcacat tcggggttcc
     1921 ggccagcgaa taggtaccgt tattattgac caataacgct ttggaattaa cttcaccctg
     1981 ttcgtttttc agcacaatgc tgacatcgcc cgctgcattt atatcagcag agacagtatt
     2041 cgaattttga ggtgagaatt gcgcatttgc tattggactc aacaagcaaa gaatcgcaaa
     2101 aatgctgtgt tttttcatca tattttcaaa caatgtaaag aatcaattat tgataaccgg
     2161 cgcaacacgt aagcctttgc tgggtacgcc acctgctatt tccggccaac cgttaagcca
     2221 tgtaatttta tccattagca acggacggcg tgtagcacct cccggaagcg ttggttttga
     2281 tatatctatg gcgtgataca gaaaataatc aaccccggca tcatcggtaa cgatttttga
     2341 attatgtccg ggacctaccc aacccaaact ctgattgccg ctcaggaaag gcgacccggc
     2401 ctgcccgtcg tttatgattg tgttgccgtt tttatcgtag tacgggcctt tgagactggt
     2461 tgcaactgct acattcacgt gatactggct atttactcca tcgcagcaac tgcctaatga
     2521 gccaaagaaa taaaacttgc cgtttttttc gcgaatataa gaagcctcaa aagcgtttcc
     2581 ggcaattttg aatttgttac ccacagtggt tttgaaggtc gaagccagct caataccata
     2641 aattccgttg aaacttcccc agaaaatata ggattttatt gaatcgcctg ttccggtctg
     2701 aaagaaataa gggtcaatgc tgtttgacac gccaatggaa cttgaatcga agattttacc
     2761 ctgatcggta aatggtcctg ccggataatt tgaaatagcc agtccgatgc ccgggttagc
     2821 gtcgccccag gtagaaatac tgtaaaacat ataatatctc ccgtttacgt aggtaacatc
     2881 aggcgcccat attccaccgg cacttttcca tgtaggacga ctcacgaagg catctttcac
     2941 aaactgccat tgaataagat tcttcgattt gataaccgga accaggtgat gaacaccatc
     3001 cgtccacgta ttttctgttc cgtaaccata aaaccaacca tcgcctccgc gaataatagt
     3061 tgggtcagca acatccggct caaaaacagg attttggtaa taagtggcac ctttcgaagt
     3121 tccctgcaac tcataagctc cgccattatt catgtagata taacttttag gaaccagtga
     3181 acttccctcg ctggcaactc cactggcaat aatatccaaa tcaccatcat tgtcaatatc
     3241 ggcagtggtg atatcggcat gctgcaatcc caatgcagcg tcaaaatgac tgtattgcgc
     3301 catggcaaag ctaaaactaa atagcccaaa cagcaggacc gttgctttaa tcatcttcat
     3361 atttattttt ctatctggaa ttacaattta ttttaattca aaaactcttt aagtacttag
     3421 cttgcaaaac aaaattagac aaaaaacaat tgtcattatc cgattgacca aaatggttta
     3481 tattttggtc ggtttatgac aaaccggggg caatgcatga tgagcatgct cattcggcat
     3541 aacaaaacac tccaatacat ggtgtgaatc tggctttggc tataaaataa tcagattaca
     3601 gaaaataata aaccgaccct atcactcact ttcagtaagc aatgggatcg atttatctac
     3661 caatctaaac aaccaaaaag tattatctcg gatcattcct gtgctattgc aacaggaatg
     3721 tataataagc tgacttttaa aatttacatc tatgtatttc tattgactac ttttttatat
     3781 accagttgtc aatatgcatc agtttctctt ttattacagc ctcgctacca acgtgcttag
     3841 ccgaaatagg attggccagg tatgattcat caccttcacc gtttttaatc cgacgcaacg
     3901 caatacgcat taaatcatga aaacggttcc cttcgaaagc tgtttccaat gccagttc
//
LOCUS       DATDNM010000199         2340 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_452369, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000199 DATDNM010000000
VERSION     DATDNM010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452369"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..919)
                     /locus_tag="VI413_03430"
     CDS             complement(155..919)
                     /locus_tag="VI413_03430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913705.1"
                     /translation="MKHICILVLSLLLSFQLLGEEPALLYKITLNTGEVYVGEIVVKT
                     VDIVMIKAKNGTRYQFQLNEVRLVEKIPGNELPKTEVPTEVTTIQSDGNFSGQVEVTG
                     GVSNAWFAFASSPNTQVSLVFGNRKALGKDLFIGIGTGYNNTFLESNSTSLGLIPVFA
                     RFQSTLSQKRTAPYIGMDAGYAFSTNPDYGGGTLIRFSIGISHRLNYKTFLVAGVYGG
                     LNSISGNLTETTDLGTFTYYGNTMMKNFGVKVGLQF"
     gene            complement(942..2081)
                     /locus_tag="VI413_03435"
     CDS             complement(942..2081)
                     /locus_tag="VI413_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6913706.1"
                     /translation="MNLFNVYPLFDIEIAKGIGCRTYDNHGIEYLDLYGGHAVISIGH
                     SHPYYVQKLTQQLEKLVFYSNSVQNKLQVELAEKLGKLSGYEDYSLFLVNSGAEANEN
                     ALKLASFHTGRTKVIAFNKSFHGRTSAAVRVTDNPKIVAPINEGFEVEFPELNDIEAV
                     RKSLQNKDVCAVIIEGIQGVGGIRTPDAEFLQALSAECKANGTILILDEVQSGYGRSG
                     KFFAHQHAGIRPDLITVAKGMGNGFPIGGVLISPMFEASHGLLGTTFGGSHLACVAAI
                     AVLDILKVEHLMENAEKIGNYLLEEMKKIHQIKEVRGVGLMIGMEFDKPVKELRNKLL
                     FEKKIFTGASGTNTIRLLPPLCLSKSDANLFLTSFKEVIESTLND"
BASE COUNT          688 a          463 c          454 g          735 t
ORIGIN      
        1 gtttccatcc tgtgattgac cgaaaagcag cccggacggc aacaaaacgc gactattttt
       61 caacccggaa aattgagaat gcaattggtt tgcaatttaa attaattgaa aaatgcattg
      121 ctgaggtgtg cgggtttatg aaaacgaatt aattctaaaa ctgcagtcct actttcaccc
      181 cgaaattttt catcattgta tttccgtaat acgtaaaagt accaagatca gttgtttcgg
      241 tgagatttcc agaaattgag ttcaggccac cataaacgcc ggcaaccaga aaagttttgt
      301 agtttaatct gtgggaaatt ccgatagaaa atctgattaa tgtgccacct ccgtaatccg
      361 gatttgttga aaatgcatag ccggcatcca tgccgatgta cggtgcagtg cgcttttggc
      421 ttaaagtact ttggaagcgt gcaaaaacag gtattaatcc cagcgaagtt gagtttgatt
      481 ctaaaaatgt attattgtat cctgttccga ttcctataaa gagatctttc ccaagtgctt
      541 tcctgtttcc gaaaaccaaa gaaacctgcg tgttgggcga agacgcaaac gcaaaccagg
      601 catttgaaac tccacctgta acttccacct gcccgctaaa gttgccatcg gattgaatgg
      661 ttgtcacttc tgtcggtact tctgttttag gcaattcatt acctggtatt ttttcgacaa
      721 gtctgacttc gttgagctgg aactgatagc gtgtgccgtt ttttgcttta atcatgacta
      781 tgtcgactgt ttttacaaca atttcaccga catagacttc acctgtattg agtgtaatct
      841 tgtacaaaag agccggttct tctcccaaaa gctggaaaga cagaagcaag gacaggacaa
      901 gaatacagat gtgcttcatg cattgagttt taaattttga atcaatcgtt aagcgttgat
      961 tcaataactt ctttaaagct ggttaagaat agattagcat ccgattttga taaacacaat
     1021 ggaggtagta agcgaattgt gtttgtacca ctggcccctg taaatatttt tttctcaaac
     1081 aataacttat tgcgaagttc ttttacgggt ttatcaaatt ccattccgat cattaatcct
     1141 acgccacgaa cctctttgat ctgatgaatt tttttcattt cttccaacag ataattcccg
     1201 attttctccg cattctccat caggtgttct actttgagaa tgtccagtac ggctattgct
     1261 gccacacaag ccaaatggct gccaccgaaa gtggtgccaa gcaatccgtg tgaagcttcg
     1321 aacatcgggc tgataagtac gccgccaata ggaaaaccat ttcccatgcc tttagctacg
     1381 gtaattaaat cggggcgaat gccggcgtgt tggtgggcaa agaattttcc gctgcggcca
     1441 tagccggatt gcacctcgtc cagaataagt atggttccgt tggctttaca ttcggcactt
     1501 aaggcttgca ggaactctgc atccggtgtg cggattccgc ctacaccctg tattccttca
     1561 atgattacag cgcaaacatc tttgttttgt aaagatttac gaacagcttc tatgtcgttc
     1621 agttcaggaa attcaacttc gaaaccttcg tttatcggag ctacaatttt cggattatca
     1681 gttacgcgta cggctgccga ggtacggcca tgaaaacttt tgttgaaagc gattactttt
     1741 gtacgtccgg tatgaaatga ggctaatttc aaggcatttt cgttggcttc ggcacctgaa
     1801 ttcaccaaaa acaacgaata atcttcatag cctgatagtt ttcctagttt ctcggcaagt
     1861 tctacctgta atttattttg aacggaattg gaataaaaaa caagtttttc caattgttga
     1921 gtcagtttct gaacatagta aggatgagaa tgaccaatgg aaattacagc atgtccacca
     1981 tataaatcga ggtactcaat accgtgatta tcatatgttc tgcagccaat tccttttgca
     2041 atttcaatat caaaaagtgg ataaacgtta aataaattca tagttactat cgtttgttga
     2101 aaagagcatt gttaaataaa tggtctgttt gaaatgttat tttttacttt tattgaaagt
     2161 tggatgcaaa tgtaattgaa aatttagaca cactcaaata aatacaatta aaaaaaataa
     2221 tgtaatttta cgtcggtttt tatgtaaaat gtcattttaa aacgttctgt agcatggaga
     2281 aatcagtcac gattttttgt aaaaatactc aatcatacca catatatccg ttaggaactt
//
LOCUS       DATDNM010000200         6001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_25321, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000200 DATDNM010000000
VERSION     DATDNM010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6001
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25321"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..393
                     /locus_tag="VI413_03440"
     CDS             <1..393
                     /locus_tag="VI413_03440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005833915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEY6913707.1"
                     /translation="SGGNHYMCGDMLDLHHYPGPNMFLRDPQRVNVLGEFGGIGLAIK
                     DHLWDANRNWGYVKLNSVEEATDEYVKYVDQLFPFIEKGLSAAVYTQTTDVEEEINGL
                     ITYDRKMIKMNEQRVRTINQKICNSLNK"
     gene            414..3614
                     /locus_tag="VI413_03445"
     CDS             414..3614
                     /locus_tag="VI413_03445"
                     /inference="COORDINATES: protein motif:HMM:NF015616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 76 protein"
                     /protein_id="HEY6913708.1"
                     /translation="MRKIVAILLLSTLCSVSSWAQIRIACVGNSITAGYGTSNAATKA
                     WPAQLGTMLGSGYSVLNCGVSGTTMLKKGDSPYWSATKLTDAKNFDPQIVIISLGVND
                     TKPVNWVYKSEFQTDYIAMINEFRANGKTPIIYVCYPAPYFGNASQNKIITDEMLGMI
                     QAVSVSQNASIIDFNSQLAGYANLFPDGLHPNDLGSGVMAQLAHNAITQATTINSGSI
                     YKILSKASNKTLQVVNSSMDNSANVETWTDTQSDAQRWIVTSVGSDLYTLTNVASGKV
                     LHLPASMPSNASNVDQYTNLNNNSVKWKIVSQGNGYFTLQSAANNAYVLNLSGGGTAN
                     GTNVDVYQASGAAAQSWSFHLQAEQDAAPTAAIADKMFAAWRAKYYDKNRTGNEVIAK
                     EGFWGVAEMMEIVDDAYEVTGNTKYSSLFTTMYSLFLNKEGTDWMWNEYNDDITWMVL
                     ACTRASLLTGNTAYLTKAKDQFDKMWTRAVHTDADGNWLTWKQGTAGTNSCINGPAMV
                     ACCYLAQATGNTAYYDKAISLYNWSKNKLFNPATGKVNDNYNNGVVGDWSSTYNQGTY
                     LGAAVMLYNYTKNVSYLYEAERIAQFTKVTMFASKAIDGETGPDLNGFKGIFMRYARR
                     YVVDCNRTDFIPWLQLNAKVAYNNRNSENLIFTRWGTKTTETITLPADTAIKRIPAFA
                     ASTAVSLLVNCPYSTILNRNAYNTIEAESFNYFKGISVEPCPDGTSNLGGLISGSYTA
                     YYNVDFGFKGAESAQIRLSSISTGNTVEIRLGSPTGTLIGTATVPNTGGWTIYRTITC
                     PVTNVKGLQNIFLVYKGSGYISNVNNFQFTEASVAGETHGLLGSYYNGSTFTTPVMQR
                     IDSTINFDWAEFSPAAPVNVNLFLARWTGKIEPLYSDTYTFYILSDNGRRVWINNQLL
                     VDKWTNDGGVTYSGTIDLTAGQKYDIKVDYYDYTGNANIKLEWESAQQIREVVPSARL
                     YLPAELPSAVAENKAKENGITVYPNPVTTKFTLDTGSMDAYQVKIFDVNGRLLTQSNE
                     RFTGIKTFDVSGLSRGLYIVTVLSTDGLKTSRTFVK"
     gene            3673..5847
                     /locus_tag="VI413_03450"
     CDS             3673..5847
                     /locus_tag="VI413_03450"
                     /inference="COORDINATES: protein motif:HMM:TIGR03296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M6 family metalloprotease domain-containing
                     protein"
                     /protein_id="HEY6913709.1"
                     /translation="MKRQLRTYSSFLLLFCCLAMFAQTHEINTQKPQKANSATTGKIE
                     ALVILIEFADRTAYFTRNEVDSFFNQVGFNKYHDNGSIHDYWAAVSQNRINVHTNVSA
                     AYYKAPKTFAYYDTDGGTGHTHELLDSALNWLDKRGFDFSQLTVDANKNIKGLSFQFV
                     GNSGAKGLWGHSSYHGRTFDGVNTASYQISELGTTEMHLGGICHEQGHMLFGWPDTYD
                     IDASNGGSSGCGKFDLMAGGNSDNTGAPSGNPMPPNPYFRYLAGWNDMIPMNGFPNDT
                     VLKIIANSGNTYVYRNPDKPGEMYIVEARKKPYRNVDMPGEGILVWHIDSVISNNANQ
                     QHTEHNHYKVSVVQADNSYHLENGINNGDINDYFRLGGITSLTYTRTAWWNSAWSGLQ
                     LRNIKAVTDTMAVSYGSANATDVGIRSSRSVGGTVSPFGLKYYTQKGTGIYTATPVKG
                     FDVENCTVDGVSQGPLSTYTFANITAPHKIDFSFIHNAVTLKDVLPTISYSYYEGAWS
                     SLPDFSKLTPVKSGSLTSLTLSITGRASDNFGIHYAGFLRAPADGEYTFYLTSDDGSR
                     FLIDGIEIVANQCEPEKTGKMKLRAGYHPFTVDFFEGQVTESLSLKWSGPALTKRTIT
                     GLVTGTIVEPTAVEGISDNAGAKISVSAQELKFTCPGESKIGVEVYSLSGTLVQKQTL
                     DITDGMASMSHANLKSGLYIVCVNSGGKTIIRKKVSIPASNQ"
BASE COUNT         1796 a         1216 c         1382 g         1607 t
ORIGIN      
        1 agcggaggaa atcattacat gtgtggtgat atgcttgatt tgcaccatta tccgggaccg
       61 aatatgtttc ttcgcgaccc gcaacgtgtc aacgtgctgg gtgagtttgg aggaattgga
      121 ttggcgataa aagaccactt gtgggatgct aaccgtaact gggggtatgt gaagctgaat
      181 tcagttgaag aagctaccga cgaatatgtg aaatatgtag accaattgtt tccgtttata
      241 gaaaaagggt tgtctgcagc tgtttacact caaaccacag atgtggaaga agaaataaac
      301 ggtttgataa cttacgaccg taaaatgatt aaaatgaacg agcaaagagt tcgtacgatt
      361 aatcagaaga tttgcaattc attgaataaa taatgacctt taatttagta tatatgagaa
      421 aaatagttgc tatactgtta ttgagtacgc tctgtagtgt cagttcatgg gctcaaatac
      481 gcattgcctg tgttggcaat agtattacag ccggttacgg aacatcgaac gctgctacaa
      541 aagcctggcc tgcacaactt ggaaccatgt tgggaagcgg atattccgtg ttgaattgtg
      601 gcgttagtgg cacaactatg ctgaaaaagg gcgatagccc gtactggagt gccacgaaat
      661 taaccgatgc gaaaaacttc gatccacaga ttgttattat ctcgttgggg gtgaatgata
      721 ccaaaccggt aaactgggtt tataaaagcg aattccagac agactacata gccatgatca
      781 atgagttcag ggcaaacggt aaaaccccta taatttatgt gtgttatcca gcaccttatt
      841 ttggaaacgc aagccagaat aaaattataa ccgacgagat gctgggcatg atacaagctg
      901 tgagcgtttc ccagaacgca tcaatcattg attttaatag ccaactggct ggttacgcca
      961 atctgtttcc ggatggactg cacccgaatg atctgggatc gggagtcatg gcgcaacttg
     1021 cacataatgc cataacacaa gctaccacta ttaattccgg cagcatttat aaaatcctct
     1081 ccaaagcctc caacaaaaca ttgcaggtcg ttaattcatc catggataac agcgctaatg
     1141 tggaaacatg gacagatacg caaagcgatg cacaacgttg gattgtcact tcggtgggta
     1201 gcgatttgta tacactcacc aatgtagcca gtggaaaagt gttgcatctt cctgccagta
     1261 tgccttcaaa tgcctcaaat gttgaccagt ataccaattt gaataataat agtgttaagt
     1321 ggaaaattgt aagccaggga aacggatatt ttaccttgca aagtgcagct aataatgctt
     1381 atgttcttaa tttatcaggt ggaggaactg ccaatgggac caatgtggat gtgtaccagg
     1441 cgagtggagc tgcagcgcaa tcgtggtcgt ttcacctgca agcagaacag gatgcagcgc
     1501 caacagctgc tatagccgat aaaatgtttg ctgcctggcg tgccaaatac tatgataaga
     1561 accggacagg caatgaagtt atagctaaag aaggtttctg gggtgttgcc gaaatgatgg
     1621 aaatagtgga cgatgcctac gaagtgacag gtaacaccaa atattcaagc ctgtttacca
     1681 ctatgtacag tttatttctc aacaaagaag gaacggattg gatgtggaac gaatataacg
     1741 atgatataac ctggatggta ttagcctgca cacgggcgtc gttgcttacg ggcaacacgg
     1801 cctatctgac aaaagccaaa gatcagtttg ataaaatgtg gacgcgtgca gttcataccg
     1861 atgccgatgg caactggtta acatggaaac aaggtactgc cggtacaaac tcatgtatta
     1921 atggacctgc tatggtggct tgttgttatt tagcccaggc tacaggtaac acagcatatt
     1981 atgataaggc aatttctctg tataactggt ctaaaaataa attgtttaat ccggctaccg
     2041 gtaaagtgaa tgacaactat aataacggtg tcgttggtga ctggagctca acttataatc
     2101 agggaactta ccttggcgct gcggtgatgc tttataatta tactaaaaat gtgagttatt
     2161 tgtatgaagc tgaacggata gcgcagttca ccaaagtgac catgtttgct tccaaggcta
     2221 ttgatggcga aaccggtccc gatctgaatg gtttcaaagg aatttttatg cgttatgccc
     2281 gccgttatgt ggttgactgc aaccggacgg actttattcc ctggttgcaa ctcaatgcta
     2341 aagtggctta taacaaccgg aattccgaga acctgatttt tacaaggtgg ggtacaaaaa
     2401 ctacggaaac aattacgttg ccggccgata ctgccatcaa gcggattcct gcttttgcgg
     2461 cttccacagc agtttcgctt ttagtgaact gtccttattc aacgatatta aacagaaatg
     2521 catacaatac cattgaggca gaaagtttca actatttcaa aggaatttct gtggaacctt
     2581 gtccagatgg aacatcgaat ctcggtggtc ttataagcgg atcctataca gcatattata
     2641 atgttgattt tggatttaaa ggggctgagt cagctcaaat cagactgtca agtatttcta
     2701 ccggaaatac ggttgaaata cgtcttggca gtccgacagg caccttaatc ggaactgcga
     2761 ccgttccgaa taccggtggg tggactattt acagaacgat tacctgcccg gtgaccaatg
     2821 taaaagggtt gcaaaatatc tttcttgttt ataaaggttc cggttatatt tccaatgtca
     2881 ataatttcca gtttacagaa gcttctgtag caggtgaaac acatggattg cttgggagtt
     2941 actataacgg ctcaactttt acaactcccg ttatgcaacg gatagacagt actatcaatt
     3001 ttgactgggc tgaattttct ccggctgccc ctgtaaatgt aaatctgttt ttagcacgtt
     3061 ggacaggtaa aatagaaccg ctttacagcg atacatatac gttctatatc ttgtccgaca
     3121 acgggcggag agtgtggatt aacaaccaac ttcttgttga taaatggacc aatgacggcg
     3181 gtgttactta ttccggaacg atagacctga ctgccggtca gaaatatgat atcaaagtgg
     3241 attattatga ttatactggc aatgctaaca tcaaactgga atgggagagt gcacagcaga
     3301 tccgcgaggt ggtaccatct gcccggttgt atttgccggc tgaacttcca tccgcagttg
     3361 ctgagaataa agcgaaagaa aacggaataa cagtttatcc taatcctgtt acaacaaaat
     3421 tcacgctgga tacaggaagc atggatgcct accaggttaa gatttttgat gtgaatggaa
     3481 gactgttgac ccaaagtaat gaacgattca ccggaataaa aacatttgat gtctctggct
     3541 tatcccgcgg gctctatatt gtaacagttt tatccaccga tgggcttaaa actagccgga
     3601 cttttgtgaa atagcactgt ctttttcatt cttcttattt ttacctgtta attaccgaaa
     3661 aatcacacat acatgaaaag acaattacgt acttactcat cgtttttact tttattctgc
     3721 tgcctggcaa tgtttgccca gacccatgaa ataaatacgc aaaaacctca aaaggccaac
     3781 tcggccacaa ccggcaaaat cgaagctttg gttatcctga tagaatttgc cgaccgtact
     3841 gcatatttta cacgaaacga agttgatagc ttttttaatc aggtgggctt taataaatac
     3901 cacgataatg gttccatcca cgattattgg gcggctgttt cgcaaaaccg tatcaatgtg
     3961 cacaccaacg tgtcggccgc atactacaaa gcccctaaga catttgctta ttacgatacc
     4021 gatggaggaa ccggtcatac ccatgagctg ctggattctg ccttgaactg gctcgacaag
     4081 cggggttttg acttttccca actcacagtc gatgccaata aaaatataaa agggctgagc
     4141 ttccagtttg tgggaaattc aggtgccaaa ggcctttggg ggcattcaag ctatcacggg
     4201 cggacttttg atggtgtaaa caccgcttcg tatcagattt ctgagctcgg tacaactgaa
     4261 atgcatttgg gtggtatttg ccatgagcag gggcacatgt tgtttggctg gcccgacacg
     4321 tatgatattg atgccagcaa tggcggttca agcggttgcg gtaagttcga cctgatggcc
     4381 ggaggaaact cagataatac cggagctcca agtggaaacc ccatgcctcc aaatccctat
     4441 ttccgttacc tggcaggctg gaatgatatg attccaatga atggcttccc gaatgatact
     4501 gttttaaaaa taatagccaa tagtgggaat acatatgttt accgcaatcc ggataaaccc
     4561 ggcgagatgt atattgttga ggcgcgtaaa aaaccatacc gcaatgtgga tatgcccggc
     4621 gaaggaattc tggtgtggca tatcgatagc gtaatttcca ataacgccaa ccagcaacat
     4681 actgagcata accattacaa agtgtcggtt gtgcaggccg ataacagtta ccatctcgaa
     4741 aacggaatca ataacggaga cataaacgac tacttccggc ttggaggcat aacctcattg
     4801 acatatacgc gcacagcctg gtggaattcg gcctggtccg gcttgcagct gagaaatata
     4861 aaggcagtca ctgatacaat ggcggtaagt tatggcagtg ccaatgcaac ggatgtgggc
     4921 attagatcca gccggtctgt tggaggaact gtcagtccgt tcggattaaa gtattacacc
     4981 caaaaaggaa cgggtattta tactgctact ccggtaaagg gctttgatgt ggaaaattgc
     5041 accgttgatg gagtgtcgca gggaccgcta tcgacatata catttgccaa tattacagca
     5101 ccacataaaa ttgatttctc ctttattcat aatgcagtta ccttgaaaga tgtgttgccg
     5161 acaataagtt acagttatta tgaaggcgca tggagttcgt tacccgattt cagtaaactg
     5221 actcctgtga aatcaggctc attgacatcg ctaacgctta gtattacagg acgtgcgagc
     5281 gataatttcg gaattcatta tgccggattt ttaagagctc ctgccgatgg tgaatatact
     5341 ttttacctta catcggacga tggcagccgg ttcctgattg atggcattga aatcgtggcg
     5401 aaccagtgcg aaccggaaaa aacagggaaa atgaaacttc gcgcaggata tcaccctttt
     5461 acggttgatt tctttgaggg acaggtgaca gaatcgcttt ctctcaaatg gagtgggccg
     5521 gcacttacca aaagaactat aacaggcctg gtgaccggta caattgtgga gcctactgca
     5581 gttgaaggaa taagtgataa tgcaggtgca aaaatatcag ttagtgcgca ggagttgaaa
     5641 ttcacttgtc cgggcgaatc aaaaattggc gtggaagtat atagcctgtc gggaacactt
     5701 gttcaaaagc aaacactcga tataacagat ggaatggctt ccatgtctca cgcaaatctg
     5761 aaatcaggtt tgtatattgt ctgtgtaaat agtggcggca aaactattat aaggaaaaaa
     5821 gtaagtatcc ccgcatcaaa tcaataacta ttattaatca aaaaaatata tgaagaaacc
     5881 attatcagtc attttactgg gcctgttgtt accactactc agccatgccc aggcagcgcc
     5941 aaaaaaagaa aagtacgaca tttcgaaaga cagattgctc tacacggtag gttatgccca
     6001 c
//
LOCUS       DATDNM010000201         3008 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1092491, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000201 DATDNM010000000
VERSION     DATDNM010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1092491"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1161
                     /locus_tag="VI413_03455"
     CDS             <1..1161
                     /locus_tag="VI413_03455"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6913710.1"
                     /translation="VDLSPLHGVLFSSITIDRFIEDELRHDHFPIKTSENSSLSTMSS
                     GQQKRALLMYLIVQKPQFMVLDDVYSNIDKKTQEFITDELSQLSCSTLLIQLFFRKRD
                     LLPCIDTVYTISGENEITNEQTADIFRTSAAAQETGLHRFSLPAEYNENHTDINPLVQ
                     LNSVSVHYGEKKVLDKVNWTIQQGEFWQLVGPNGSGKSTMLSIIIGDNPRGYGQDLIL
                     FGRKKGSGESIWDIKRQIGYFTPAMIEQFTRVDTVENMIISGLMDSVGLYTKPTDLQK
                     DIAKSWIKRLGENYRNRTFQSLSLGQQRMVMVARAMVKHPSLLILDEPTIELDDENSR
                     LFIDMVNAIAAEKKIAIVYVSHRDEQGLQPDKIYELVPTPNGHTGVVVEITQ"
     gene            1379..2152
                     /locus_tag="VI413_03460"
     CDS             1379..2152
                     /locus_tag="VI413_03460"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEY6913711.1"
                     /translation="MNSTVFSNLKVRWQDSDLHVFEELSQNSVVFDDLIQILQPGKHF
                     IFILNEIQSKFEWISPSFSTIIDYNESELHSLLDKHNIHPDDLESVLEIESKIQRFIN
                     ETRPNELQDFKIMYDYRFRKKDGSYIRLLVQQIRVPEKKSSLSHKIIGIVCDISYLKS
                     DGTPSFCILNVKEATTLQPNSQDEDPDFSLNAFSKREREIISLIISGLSSREIASKLF
                     ISIDTVKNHRKNILTKSNCSNSIQLFNKCVHSGWDKLYS"
     gene            complement(2481..>3008)
                     /locus_tag="VI413_03465"
     CDS             complement(2481..>3008)
                     /locus_tag="VI413_03465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913712.1"
                     /translation="PACFIYFYSTTNMLEIDIENFLLVLMVFLFLSVLLYFYLPKLSQ
                     YLAKTNIASKVSSFTTGLSAYKRVDLIKIVGVSLFRYFVFGSQFFLMLHFFGIQLQPL
                     EALIAIPTNYLFVTFSPSVAFSEAAIRSSYAVLFIGSYSGQVINIALAGISIWAVNFV
                     IPMLIGSLIMVGRKD"
BASE COUNT         1064 a          596 c          524 g          824 t
ORIGIN      
        1 gttgatttaa gcccattgca tggagtttta ttttcatcga ttaccatcga ccgtttcatt
       61 gaagatgagc tgcggcacga tcactttccg attaaaacca gcgaaaactc aagcctttca
      121 accatgtcga gcggccaaca gaaaagggca ttgctcatgt accttattgt ccaaaaacct
      181 caattcatgg ttcttgatga tgtgtacagc aatattgaca aaaagacgca ggaatttatt
      241 accgacgaac tttcacaatt atcctgttct acgttattga ttcaactctt tttcagaaaa
      301 cgcgatttat tgccttgcat cgacacagtt tacacgataa gcggagaaaa cgaaattaca
      361 aacgaacaaa ctgccgacat ttttcgcaca tctgcagctg ctcaggaaac aggactacac
      421 cgcttctctc taccggccga atacaatgaa aatcatacag atataaatcc attggttcag
      481 cttaattcag tctcagtcca ttatggagaa aaaaaagttt tggacaaggt gaactggacc
      541 attcagcagg gtgaattctg gcaacttgtg ggtccaaacg gttcagggaa aagtacgatg
      601 ctatcaatta ttatcggaga caatccacgt ggttacggcc aggacttgat tcttttcggg
      661 cgaaagaaag gttccggcga atcaatttgg gatataaaaa gacaaatcgg ctattttaca
      721 ccggcaatga ttgagcaatt tacgcgcgtg gacactgtgg aaaacatgat tatttccgga
      781 ttaatggatt ctgtaggact ttacacaaaa ccaaccgatt tacaaaagga tattgcgaaa
      841 agctggatta aaagattggg cgaaaactac cgcaaccgga catttcaaag cctttcgctt
      901 ggtcagcaac gcatggtaat ggtagcccgt gcgatggtaa aacatccgtc attactaatt
      961 ctggacgaac caaccataga actcgatgac gaaaacagca ggctttttat tgatatggtg
     1021 aatgccattg ctgctgagaa aaaaatagca attgtatacg tctcccaccg cgacgaacaa
     1081 ggtctgcagc ccgacaaaat atatgaactc gttccaactc caaatggaca taccggagta
     1141 gtagttgaaa taacacaatg atgactaatt gcacacgctc atagacacta aagactattt
     1201 ttaactcgcc atccaacttg aagcgccatt tgcaaaacaa ttagcgcatt aacaaaacaa
     1261 tttcttattt aatattgttt aactatttca ggccttattt gataaattca ggttacaaaa
     1321 acctcaattt cattgcaagt aacgattaat agtacaaact tattaaatct gattgtttat
     1381 gaattcaact gtattctcga atttaaaagt ccgttggcaa gattcagact tacacgtgtt
     1441 tgaggagctt tcacaaaatt ccgttgtgtt tgatgattta attcaaatat tacaaccggg
     1501 aaaacatttt atttttattc taaatgaaat acaatcaaaa ttcgaatgga taagcccctc
     1561 gttttcaacc ataattgatt acaacgaaag cgaattacac agtttgcttg acaaacacaa
     1621 cattcatccg gatgatttgg agtctgtttt ggaaatcgaa agtaaaattc aacgatttat
     1681 aaacgaaaca cgccccaatg aacttcagga tttcaaaata atgtacgatt atcggtttag
     1741 aaaaaaagat ggtagctaca tccgattact agtgcaacaa atccgtgtac ccgaaaaaaa
     1801 gtcatctctt tcacacaaaa taataggaat cgtttgcgat atttcctacc ttaaaagtga
     1861 tggcactcca tctttttgta ttttaaacgt aaaagaagcc acaactttac agcccaatag
     1921 ccaggatgaa gatccagatt tttctttaaa tgcattctcc aagcgagaaa gagaaattat
     1981 ttcgcttatt attagcggat tatcatcccg cgaaatagca tcaaagcttt tcatctccat
     2041 tgacacggtc aaaaaccatc gaaaaaacat tcttacaaag tcgaattgca gcaattcaat
     2101 tcagctattt aataaatgtg tacattccgg ctgggataaa ttatactcat aatgagtttg
     2161 aaaatcaaat gcgtacagta ttattttcga aaaatgacca cttagggcta ttgtgtagta
     2221 ttttttatga cgttatcttt gctactcaac accggtaata aatactttcg gttaccggaa
     2281 ataaaaaaaa ggaattaata cgcaaccatg taagtttatt aagcgtacaa cacacttacg
     2341 agcaacacat taagttgcaa aataaattct ttttaaaaga acaacctaac ctaactttct
     2401 atgatttttt aaatctgatt attaacattc gcggtctcaa atcaaactga ggccgctttt
     2461 tttatatccc agctaaaaaa tcagtccttc cgccctacca ttatcaaaga accaataagc
     2521 attggaataa cgaaattcac ggcccagata ctaattccgg caagagcaat attaatcacc
     2581 tggccggaat aagaaccgat aaacagaact gcatacgaac tgcgtattgc agcctcggaa
     2641 aaagcaacag acggcgaaaa agtaacgaat aaataatttg taggaatagc tatcagagct
     2701 tctaaaggtt gtaactgaat tccgaagaaa tgcaacatta gaaaaaattg cgagccaaaa
     2761 acaaaatacc gaaacagtga aacacccacg attttgatta aatccacacg tttataagca
     2821 gaaagaccag ttgtgaaact gctcactttt gacgcaatat tagtcttagc aaggtattgg
     2881 cttaattttg ggaggtagaa atacaacagc acggacaaaa acaagaaaac catgagaacc
     2941 aacagaaaat tctcaatatc aatctccagc atgttggttg ttgaataaaa ataaataaag
     3001 caggcagg
//
LOCUS       DATDNM010000202         5336 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1200751, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000202 DATDNM010000000
VERSION     DATDNM010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5336
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1200751"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1267)
                     /locus_tag="VI413_03470"
     CDS             complement(<1..1267)
                     /locus_tag="VI413_03470"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913713.1"
                     /translation="MKLNQYIVSLMILAFAATSCQDYLTVLPENNQSTVQYWKTKEDV
                     EAVLGAGYVKLRDAQEYLMLWGEGRGNGIYFGTSYTTGSQAAQKLRQFDILATNDLAK
                     WDKLYAVINMANSVIKYGPQVKDASFNVNVLHSYLSEAYFQRALAYYYLVRVWNNVPF
                     VKEPYVDDSAPYAIAQTEGNEILKSCLIDLNNSLESAKTKFPESDITNPINTKGRATK
                     WAIYSLIADINLWLGNYDECIPACEAVINSGQIGLIGGANWFANFFPGNSNESIFEIQ
                     YSYNLGQTNSFITFYSTAKLYYISPYQQALYEANAGDLRGLLSSYTADGKIWKYIGVK
                     SDGTTARNTSSQTDQNWIIYRLADIYLMEAEAYAMKGDSVSMGKGLALLNAVRNRAGI
                     ASSAGNSEKLGMIKLILEERQREFFCEGKN"
     gene            complement(1342..4602)
                     /locus_tag="VI413_03475"
     CDS             complement(1342..4602)
                     /locus_tag="VI413_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007478937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6913714.1"
                     /translation="MKIFRKIFISVIALIAVQSLAAQTVLTGIIKDSKTNEALTGANV
                     YVLNSDNRSLGGCIVDLNGEYRLQIPAQQNLTIKYSFVGYKSKTVKFSGQKVINMELD
                     DATTFEAVEVSAKRTEKNSLGQTMRERVSAIQKVSMEGLETAGVTNVTEALQGALANV
                     DVLTGADPGSGSSIRIRGTSSLSASSEPLFVLDGVPMPVDVSSDFNFSTANSDDYSQL
                     LNVSPSDILSIEVLKDAAATAIWGSKGANGVLLITTKKGSKGRMSFTYSTKYESSKEG
                     SSIPMLDAKQYVSMIQDALWNSINDAGQGTSEALNYMSLLYNTKEIGYDPAWVYFKEY
                     NQNVNWLDKITQNGMSFDNNFSLSGGGDKADYRLSLGHLTDEGTTVGTKFERFSGKFN
                     MQYKFSDKLDISTNYSFTRGIRNATYDDSYLDVSIRGQALTKMPNMSPYIIGSDGTPT
                     SEYFTPFSYFQGSYATNKILNPVAMAYEATNKTTSVSSLMIFNLHYNIVKGLDYYGIM
                     GFQSNLNKTDKYLPQSVSGESYISKYTGMSSESGSDAMYLTTENRLIFNKTFNDKHKV
                     LLSGVWQTTDQSTSSFSGTTTGNSSAGITDLIAGSNSKNYGGGSGHVNYRSVGGLMNG
                     QYSFDERYILNAGFRMEASSSLPLKTRWGAFPTVGVAWVFGDEKFMKNFKALSLGKIR
                     VNWGQSGNSPSGSAPYIGSLSAIANGYGEMAAIQPIKVQLDNITYEKLSQTNIGIDFG
                     LLDSRLNMSLDLYDKFTSNMLQKNVDVPTSTGYTTVTYYNSGKMDNKGWEFSTDCQII
                     KNKDWKFNVNFNISQNRNEIIELPENKQNLNYTFGNKNYAYKFTAGEPLGSFYGYKYL
                     GVYQNTAQTYAQDADGNTIYDINGSPVIMKNGTVKVYPGDAQYADVNNDGVINKYDIV
                     YIGNSNPLFIGGFGFNLTYKNVGLVATFHGRAGQKVINAVRMNNEYMYAKDNQSTAVL
                     RRWRHEGDDTEIPRALYNRGYNDLGSDRFLEDASFLRLKTLTLKYDLPKKISGKLHIK
                     KLQLYATGYDLLTFTNYKGQDPEISLSFVDKLYPMYIDKASTPKPMRFAVGMNLNL"
     gene            complement(4620..>5336)
                     /locus_tag="VI413_03480"
     CDS             complement(4620..>5336)
                     /locus_tag="VI413_03480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913715.1"
                     /translation="KKTFAGGHIATEMISNRGTEYVYRTLTPYNYLYINGNKVYSSAL
                     FNLGVDAKVPTFTKIEGDWSNGAAYALSGETASALVPESNQFKNLTSTSSPADLKNMI
                     AYLTAAGITSSSPPYNFLQGERFIVLVPPAASLLAGYTALPSKTPDKVAAFLKPYFIN
                     VGASNLLDYPFPGAGVQGTLVSFGKKSDGTAATFTLVDRGNELVIIDAKGNEAKITSY
                     FPKIYADGAAYQIDKLLVVE"
BASE COUNT         1499 a         1106 c         1015 g         1716 t
ORIGIN      
        1 agttcttacc ttcgcagaag aattcacgtt gacgctcttc cagtatcaat tttatcattc
       61 ccagtttttc ggaattcccg gcagatgaag caatgcccgc gcggttacgt actgcattta
      121 ataaggctaa tcctttgccc atgctcacag aatcaccttt cattgcatat gcttcggctt
      181 ccattaaata gatatcggcc aaacggtaga taatccagtt ttgatctgtt tgtgagctgg
      241 tgtttcttgc agtagttcca tctgacttaa ccccgatata tttccatatt tttccatcgg
      301 ctgtgtaaga tgacagcaat cctcttaaat cgccggcatt tgcttcatac aaagcctgtt
      361 gataaggcga aatgtagtat aacttagctg ttgaatagaa tgtgataaat gagtttgtct
      421 gccccaggtt gtaactgtat tgaatttcaa aaatactctc gttgctgttg cccgggaaga
      481 agtttgcgaa ccagttggca ccaccaatta aaccgatttg accggaattg ataactgctt
      541 cgcaagccgg aatacattca tcataatttc ccaaccacag gttaatatca gctatgagtg
      601 agtaaatagc ccattttgta gcacgacctt tcgtgttaat cgggtttgtg atgtcagact
      661 cagggaattt tgtttttgcc gattccaatg aattgttcaa atctatcaaa cagcttttta
      721 gtatttcatt accttcggtt tgagcaatgg cataaggtgc cgagtcgtcg acataaggtt
      781 ctttcacaaa aggaacattg ttccaaacgc ggacaagata ataataggct aaagcgcgtt
      841 gaaaataggc ttccgaaaga taagaatgca gaacatttac attgaacgat gcatctttaa
      901 cttgcgggcc atattttata actgagttag ccatattaat cacagcatat agtttatccc
      961 attttgccag atcattggta gctaaaatat caaattgacg aagtttttga gctgcctgtg
     1021 atcctgtagt atatgatgtg ccgaaataaa ttccgtttcc gcggccttca ccccaaagca
     1081 taagatattc ctgtgcatcc ctgagtttta catatcctgc tccaagtaca gcttcaacat
     1141 cttcttttgt tttccagtac tgaacagtgc tctggttgtt ctcggggaga accgtcagat
     1201 aatcctggca cgaggtggct gcaaatgcaa gtatcattaa cgatacgata tattgattta
     1261 atttcatacg ataataattt tatttttaat gtcgtatgga actcgttctt gtaacggaac
     1321 tcgtttcata tctgtagctt attataaatt aagattcata ccaaccgcaa aacgcatagg
     1381 ttttggagta gacgctttat cgatatacat tgggtataat ttgtcaacga aagaaaggct
     1441 gatttcagga tcttgtcctt tgtaattggt aaatgtcagc aaatcatatc cggtagcata
     1501 aagctgaagt tttttgatgt gcagttttcc tgatattttc tttggcaaat catatttcag
     1561 agtcaatgtc tttaaacgca ggaatgaagc atcttccaaa aaacgatccg aaccaagatc
     1621 attatatccg cggttataca atgcgcgtgg aatctcggta tcatcacctt cgtgtctcca
     1681 gcggcgaagt acagcagtac tttggttatc ttttgcatac atatattcat tgttcatccg
     1741 aacagcattg ataaccttct gaccggcacg tccatggaat gtagctacca aaccaacatt
     1801 tttataggta aggttaaatc cgaaaccacc aataaacagc gggttggaat tgccaatata
     1861 tacaatatca tatttgttga ttacaccatc gttattcaca tcagcatatt gtgcatcgcc
     1921 gggatatacc tttacagtcc cgtttttcat tattacagga cttccattga tgtcgtagat
     1981 ggtatttccg tcggcatcct gcgcataggt ttgagccgtg ttttggtaaa cacctaggta
     2041 tttatatccg tagaatgagc ccaacggttc acccgctgta aacttataag cataattctt
     2101 attaccaaaa gtataattca gattctgttt gttttccggc aattcaataa tctcgtttct
     2161 gttttgcgaa atattgaaat tcacattaaa cttccagtct ttgttcttga ttatctgaca
     2221 gtcagttgaa aattcccaac ctttgttgtc catctttcct gaattatagt aagttacagt
     2281 ggtgtaacct gtagatgtag gaacatctac atttttttgc aacatattgc tggtaaattt
     2341 atcatacaaa tccaatgaca tgtttaatcg gctgtctaat aatccaaagt caataccgat
     2401 atttgtttga gacaattttt cgtaagttat gttgtctaac tgaactttta ttggctgaat
     2461 ggcagccatt tcgccatatc cgtttgcaat agcacttaac gagccaatgt aaggtgctga
     2521 accggaaggt gaatttccac tttgtcccca gtttacacga atttttccaa gtgacaacgc
     2581 tttaaagttt ttcatgaatt tttcatcgcc aaatacccat gctaccccca ctgtggggaa
     2641 agctccccaa cgtgttttta aaggtaaact agaacttgct tccatgcgaa aaccagcatt
     2701 taaaatgtaa cgttcgtcaa atgagtattg gccgttcatt aatccaccaa cgctccggta
     2761 gtttacgtga ccagaaccac cgccataatt tttcgaattg cttccagcaa taaggtcagt
     2821 gattcctgcg cttgagttac ctgttgtagt ccccgaaaat gaagatgtac tctggtcggt
     2881 agtttgccat acgccactca acaaaacttt gtgtttgtcg ttaaaggtct tgttgaaaat
     2941 caaccggttt tctgtagtca gatacatggc atcagaacca ctttcagaac tcataccggt
     3001 atatttactt atataggatt cgccggaaac actttgaggc agatatttat ctgttttatt
     3061 caggtttgac tgaaatccca taatcccata ataatccaat ccttttacaa tgttataatg
     3121 caggttgaaa atcataaggc ttgatacaga agttgttttg ttggttgctt cataagccat
     3181 ggctaccgga ttcaaaatct tgttggtagc atatgacccc tggaaataag aaaatggagt
     3241 gaaatattca ctggtaggag ttccatcgct tccaataatg tacggactca tattcggcat
     3301 ttttgttaat gcctgaccac gaatagatac atcaagataa ctgtcatcat aagtggcatt
     3361 tctgatacct cgggtaaagc tataattagt cgagatatcc agtttatcag agaatttata
     3421 ttgcatattg aatttcccgc tgaaacgctc gaacttggtt ccaactgttg taccttcgtc
     3481 agtcaaatga ccaagcgaaa gtcggtaatc agctttgtcg ccaccaccgg aaagagagaa
     3541 gttattatca aacgacatcc cgttttgggt tattttatcc agccagttta cgttttgatt
     3601 gtattctttg aaatacaccc aggccgggtc atacccgatt tcttttgtgt tgtacaataa
     3661 agacatgtag ttaagtgcct cactggtacc ctggccagca tcgtttatcg aattccacag
     3721 tgcatcctga atcatagata catattgttt tgcgtccagc atggggatgg aactaccttc
     3781 tttgctcgat tcgtattttg tggagtatgt aaatgacatt cttcctttcg aacctttttt
     3841 agttgtaatc aaaagcacgc catttgcccc tttcgaaccc caaatagctg ttgcggcagc
     3901 gtctttcaat acttcgatgc tcaaaatatc gctgggcgat acgtttaata actggctata
     3961 gtcatcggag ttggcagttg aaaaattgaa atccgatgat acatctacag gcattggaac
     4021 gccatccaga acgaataatg gttcggacga ggcacttaat gatgatgttc cacgaatacg
     4081 gattgaactt cctgaacccg gatcggctcc ggttagtacg tccacgtttg ccaatgcgcc
     4141 ttgtaaagct tcggtaacat tagtaacacc ggctgtttca agaccttcca tacttacttt
     4201 ttgtattgcc gaaacacgtt ctcgcatggt ttggcccaga gagttttttt cagttctttt
     4261 ggccgatact tctactgctt caaaagtagt agcatcatcc agttccatat tgattacctt
     4321 ttgaccgcta aatttcacag tttttgattt ataaccaaca aacgagtatt ttatggtcaa
     4381 attctgttga gctggaatct gtaatctata ttcaccgttt aaatcaacaa tacatcctcc
     4441 caaagaacgg ttatctgaat ttaatacgta cacatttgca ccagttaaag cttcgttggt
     4501 tttcgaatct ttaataattc ctgtaagaac agtctgtgca gctaatgatt gcactgcaat
     4561 gagcgcaatc accgaaataa atatctttcg aaatattttc atatttagtc cttttttcat
     4621 tattcaacta ccaataattt gtcaatctga taagctgcac cgtcagcata aattttagga
     4681 aaataacttg tgattttggc ttcatttcct ttggcatcga taataaccaa ttcgttacca
     4741 cgatcaacca gcgtaaatgt tgctgcggtt ccatccgatt ttttcccaaa tgataccagt
     4801 gttccttgca cacctgcacc agggaaagga taatcgagta aattacttgc gcctacattt
     4861 atgaaatagg gtttcaggaa agcagcaact ttatcaggag ttttacttgg gagtgccgtg
     4921 tatcccgcta acaaactggc agcaggtgga accagcacaa taaagcgctc gccttgtaag
     4981 aagttgtaag gtggcgaaga agatgttata ccggcagctg tcaggtaagc aatcatgttt
     5041 ttcaaatctg cagggctgct tgtggatgtc aggttcttga actgattgga ttccggaact
     5101 aatgccgaag ctgtttcgcc cgaaagtgcg taggcagctc cgttgctcca gtcaccttca
     5161 atttttgtaa atgtcggaac ttttgcatca actcctaaat tgaacagggc agaagaatat
     5221 actttatttc cattaatgta caggtagtta taaggtgtaa gcgtccggta aacatattcg
     5281 gttcctctgt tcgaaatcat ttcggtagca atatggcctc ctgcaaaagt tttctt
//
LOCUS       DATDNM010000203         4149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1414315, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000203 DATDNM010000000
VERSION     DATDNM010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4149
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1414315"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(291..1571)
                     /locus_tag="VI413_03485"
     CDS             complement(291..1571)
                     /locus_tag="VI413_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HEY6913716.1"
                     /translation="MRNICFYFQLHLPFRLKRYRFTEIGKDHYYYDDFQTGDRIRNAV
                     EQSYLTANRTISEMIRSSNGKFRCAFTISGVTLEQLEQYAPEVIDSFKELAKTDSVEF
                     LAEPYAHSLSAIYDGDEFERQVTMHANKIESLFGKRPTALFNAELLYSDDIGERASKM
                     GYKTVLIDEAKHIMGWKSPNYVYNHSYVPKLKLLVRNNKLSDDIAFRFSELTLSAENF
                     IGWIASFPQDEKVINMGFGYEVLGITQPAHTGIFEFMKALPYHAMEQKMNFVLPSEIT
                     KKSDSAGPLSVPHPISWVGDEKNLTPWTANDLQQEALNKLYAVSERVRMCSDKPLLRD
                     WLILQSTDHFRYMSHKDAYGTHYESAYDAFMNYMNVLADFLERVDAQYPSTIDNEELN
                     ELLKTINQQEKEIEQLENELKKLRARKEKKEVEK"
     gene            complement(1646..2896)
                     /locus_tag="VI413_03490"
     CDS             complement(1646..2896)
                     /locus_tag="VI413_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6913717.1"
                     /translation="MKALMFGWEFPPHILGGLGTASYGLTKGMALQEDMQITFVIPKP
                     HGDEDQSFLKIIGACNVPVVWKENDWNHVNQRIGSMMHPDEYFWLRNGIKYDFNRIHT
                     NDLGCIGFSGRYPDNLIEEISNYEAVASVLAHQVDFDIIHSHDWLTYPAGVFAKQISG
                     KPLVIHVHATDFDRSRGQVNPTVYSIEKRGMDMADHIMTVSDLTRKIVIEKYHQDPRK
                     VTTVHNAVDPLPNAESFQKSQRKDKVVTFLGRITMQKGPEYFVEAAHLVLQKTDGVRF
                     VMAGSGDMMHAMIDLVAKRGIADRFHFTGFLKGKQVHEMLAESDVYIMPSVSEPFGIS
                     PLEAMQVGTPTIISKQSGCAEILTHAIKTDYWDIDAMADAIYAIVKNPGMYKSLRDLG
                     RDEVNNISWYDAGMKVRKIYESVM"
     gene            complement(2900..>4149)
                     /locus_tag="VI413_03495"
     CDS             complement(2900..>4149)
                     /locus_tag="VI413_03495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HEY6913718.1"
                     /translation="MPIKKGESIIFSAGISEVSPRKLKALWEEEVERRIHRVDMFSCL
                     KNSAQQFYKREGDKTYLLAGYPWFGARARDQFVALPGCTLTIDRMDYFDAIMETAIPE
                     LEQFMAGERSGFKLQAIDDPDVLLWFLWTIQIFSKATSLKEAANRYEKIANAIISFIR
                     KQNHPNLFLHNNGLLHVNGTEKPATWMNAMENGRPITPRTGYVVEINSLWYNALKFTS
                     ELTREAGNEHGADLLDYQAEIAREAFVKTFWNGTYLYDFVDGNYKDLEVRPNMILAVG
                     LPYSPLSTQQQKSVLDITTKELLTPKGLRTLSPKSGSYRPNYVGGQLERDRNYHNGPV
                     WPFTFGAFAMAYLKIYKLSGKSFLERMLIGFEAEMTELCVGTLPELFDGNPPFKGHGG
                     MSFATSVAEVLRILNVLKKYENE"
BASE COUNT         1158 a          869 c          754 g         1368 t
ORIGIN      
        1 gtacaaaacc gccgatgaca tagcattcct gctgttgttc atcggctgct tcggaaataa
       61 tctgaaatat tttatcttgt aaaaatgctt tcattaaatt gtataaatac ttattttttc
      121 aacaatacaa aagtacgtga ataaattcaa tttccaaagt aacattagat ctcatgaatt
      181 gtttcaagtg ttgcgtaata tgtctcttta gttaccttgt ttttcaattg aaagagccgc
      241 taaaaaatta tctcagcggc tctttcaatt atgatggtga ttttcaaata ctacttttca
      301 acttcttttt tctcttttct tgctctaagc ttttttagct cattttcaag ttgttcaatt
      361 tctttttcct gttgattaat ggttttcaac aactcgttca attcttcatt gtcgatggtt
      421 gaagggtatt gggcatcaac tcgttccaga aagtcggcca gcacattcat gtaattcata
      481 aatgcatcgt aagccgattc ataatgcgtt ccgtaagcat ctttatgact catgtagcgg
      541 aaatgatcgg tagattggag tatcagccaa tcacgcaaaa gaggtttgtc ggaacacata
      601 cgaacgcgct cacttacagc atacagctta tttaaagcct cttgttgcaa atcattggca
      661 gtccatggtg tcaagttctt ttcatctcca acccagctta ttgggtgcgg cacggacaaa
      721 ggaccagcag aatcactttt ttttgtgatt tctgaaggaa gaacaaagtt cattttttgt
      781 tccattgcat ggtaaggcaa agctttcata aactcaaaaa tgccggtatg cgcaggttga
      841 gttattccta aaacctcata tccgaatccc atattaatta ctttttcgtc ctgaggaaaa
      901 ctggcaatcc aaccaataaa attctcagca gataatgtca actctgaaaa acgaaaagca
      961 atatcatcgc taagtttatt gtttcggact aataatttca gctttgggac gtatgaatga
     1021 ttgtaaacat aattcggact tttccaaccc attatatgtt ttgcttcgtc tataagcact
     1081 gttttgtatc ccattttaga agcccgctcc ccaatgtcat ctgaataaag caattccgcg
     1141 ttgaataagg ccgttgggcg tttgccaaat agtgattcaa ttttattggc atgcatggtt
     1201 acctgtcgtt caaattcatc gccatcgtaa attgctgaaa gtgaatgtgc gtaaggctcg
     1261 gccaaaaatt caacactatc tgttttagcc aattccttaa aactatcgat aacttcaggt
     1321 gcatattgct ctaattgttc cagggtaact cccgaaattg tgaatgcaca acggaatttt
     1381 ccgttagaac tacgaatcat ttctgaaatg gttcgattag cagtcagata tgattgttct
     1441 acagcattac gaatccggtc tccggtttga aaatcgtcgt aataataatg atctttacca
     1501 atttcagtga aacgataccg tttcagacga aaaggaagat gaagttgaaa ataaaaacaa
     1561 atgtttctca tattgtatag atattggtct catttatgta gagacatatt aacgttgtgt
     1621 tatttacttt gcacagaatt gtaaattaca tgacactttc atagattttg cgcactttca
     1681 tgccagcatc ataccagcta atgttattca cctcatctct gccaaggtcg cgcaaacttt
     1741 tatacatgcc gggatttttt acgatagcat aaatagcatc tgccatagca tctatatccc
     1801 aataatctgt ttttattgca tgtgttagaa tttctgcaca accggattgt tttgaaatga
     1861 tagttggcgt tcctacctgc attgcttcta atggcgatat tccaaaaggt tcggacacag
     1921 atggcataat gtatacatca ctttcggcca gcatttcatg tacttgtttg cctttgagaa
     1981 atccggtgaa atggaaacga tctgctattc cacgctttgc taccagatca atcatggcat
     2041 gcatcatgtc accacttccg gccataacaa accggacgcc atctgttttt tgcaaaacaa
     2101 gatgagctgc ttccacaaag tattcaggtc ctttttgcat ggtgatgcgt ccaaggaaag
     2161 ttactacttt atctttgcgt tggctttttt gaaatgattc cgcattgggc aacggatcaa
     2221 cggcattatg cacggttgtt acttttcgtg gatcctgatg gtatttttca attacaattt
     2281 tgcgggtcag atcactcaca gtcataatgt ggtcagccat atccatacct cgtttttcaa
     2341 tgctgtaaac cgttggattg acctgtccac gactgcggtc gaagtctgtg gcatgaacat
     2401 gaattaccag cggttttccg cttatttgct ttgcgaaaac tcctgccggg tacgtcagcc
     2461 aatcgtgtga atggataata tcaaaatcaa cctgatgagc taaaacgctc gccacggctt
     2521 catagtttga tatttcttcg atcagattgt caggatagcg gcctgagaat ccaatacagc
     2581 ccaaatcgtt tgtatgtata cggttaaaat catatttaat cccgttcctt aaccagaaat
     2641 attcatcggg atgcatcata gaaccaattc gttggttcac atgattccag tcattttctt
     2701 tccatacaac tggtacgtta cacgctccga taattttcag gaaactttga tcttcatcgc
     2761 catgaggttt tggaattaca aaggtaattt gcatatcctc ctgtaacgcc attcctttcg
     2821 tcagtccgta gcttgctgtt cccagtcccc ccaaaatatg tggtggaaat tcccagccaa
     2881 acattaatgc cttcatgtat tattcgtttt cgtatttttt taatacattt aaaattctca
     2941 atacttctgc cacactagta gcaaatgaca tacccccatg tcctttaaat ggcggatttc
     3001 catcaaataa ctcagggagt gttcctacgc agagctcagt catttcagct tcaaaaccaa
     3061 tcaacatacg ttccagaaat gactttccgc taagtttgta aatttttaaa taagccatgg
     3121 cgaaagcacc aaatgtgaat ggccaaactg gtccgttatg ataatttcta tcgcgctcta
     3181 attgaccacc tacataattc ggtctgtagg agccactttt aggacttaag gtacgtagac
     3241 ctttgggagt cagtagctct ttagttgtta tatccagaac agatttttgt tgttgggtac
     3301 tcaggggcga atatggtaat ccaactgcta gaatcatatt gggtcgtact tcaagatctt
     3361 tgtaatttcc atctacaaaa tcgtaaagat atgttccatt ccaaaatgtt tttacaaatg
     3421 cttctcgagc tatttctgcc tgataatcca acaagtctgc tccatgttcg tttcctgctt
     3481 cacgggttaa ttctgacgtg aatttcagag cattgtacca gagtgaatta atttctacca
     3541 cgtaaccagt cctgggcgtt atcggacgac cattttccat ggcattcatc catgtggcgg
     3601 gtttttcagt gccatttaca tgaagaagcc cattgttatg taaaaataaa tttggatgat
     3661 tttgttttcg aataaaagaa ataattgcat tggcaatttt ctcatatctg tttgcagctt
     3721 cttttaatga cgttgctttt gaaaatatct ggatagtcca taaaaaccac aggagcacat
     3781 ccgggtcatc tatagcctga agcttgaatc cgcttcgttc gccagccata aattgctcca
     3841 actctggtat tgctgtttcc ataattgcat caaaataatc cattctgtca atggtaagag
     3901 tgcaaccggg caaggcaaca aactgatcac gcgcccgggc tccaaaccat ggatagccgg
     3961 ctaacaagta ggttttatct ccttctcgtt tgtagaattg ctgtgctgag tttttcaggc
     4021 agctaaacat atcaaccctg tggattctac gttctacttc ttcttcccaa agtgctttga
     4081 gttttcgtgg agacacttcc gaaattcctg ctgaaaaaat gattgattcg ccttttttta
     4141 taggcattt
//
LOCUS       DATDNM010000204         2371 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_879698, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000204 DATDNM010000000
VERSION     DATDNM010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_879698"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2371
                     /locus_tag="VI413_03500"
     CDS             <1..>2371
                     /locus_tag="VI413_03500"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6913719.1"
                     /translation="VSIRVRGGTSINAGNEPLYVIDGFPVYNGDASVDAGVTSGSSIN
                     PLASINPADIESIDVLKDASSTAIYGSRGANGVILVTTKAGKKGSSAITYDGYYGVQR
                     VAKKITVLNARQWGALKNDALKDAGKNPFYTQSQLDSLGTGTDWQAAAFRDAPVQSHT
                     LSISTGTDKTKILLSGNYFQQDGVIINTGFDRYSGKLNLDHELNKKFRIGVYLNGSLT
                     HAVVSPTSTVPNILSMVPVVPVRDANGNFTSNSSFGATVANPIATLTEAINETNTTRF
                     LVNGFGEYKIIEGLTAKVSLGTDIINNKQNKYTPSTLYESSPGGNASIGSLSSLNWLN
                     ENTLNYKKTLGAKHSLDVLVGNTQQHSRTETFIAGASNFVSDAFTYNNIGSGTVVSIP
                     ASASSEWTLQSYLARINYGYDERYLLTLTARDDVSSRFGKNNKWGTFPSAAFAWNASN
                     EKFLKGVKQISSLKFRLSAGLTGNQEIDPYKSLARLSNYQYSFANSLVNGFATSSFAN
                     DNLTWEKTAQYDLGVDLALFADRIQLTSDVYYKKTSDLLLEVPVPYSSSLSSAFQNLG
                     VVQNKGIEVGLKTLNLTGKFEWTTNFIFSVNQNKVLSLGRADYFFVTDPASTTTLPTQ
                     IIKVGESVGSFYMYQADGVDATTGNQKYKDLNNDGKITQDADRTIVGSTQPKFLASIT
                     NTFRYKNFDLSIFLNSSYGNKIFNWTRANLELGTGYTGAVATLLNRWTATNTNTDMHK
                     AIENPAVTISDRFVEDGSYLRLKNISLGYTFPKKLISKVKIKAARVYVSG"
BASE COUNT          728 a          493 c          505 g          645 t
ORIGIN      
        1 gtatctattc gcgtcagagg aggtacttcc attaatgccg gcaacgaacc gctttacgta
       61 attgatggtt tccctgtgta taatggagat gcatcggttg atgccggagt aacaagtggt
      121 tccagtatca accctcttgc cagcatcaac cctgccgaca ttgaatccat tgatgtattg
      181 aaagatgctt cttctaccgc tatctacggt tcgcgtgggg caaacggagt tatactcgtt
      241 actacaaaag ccgggaaaaa aggttcttca gctatcacct acgatggata ttacggcgta
      301 caacgagtgg caaagaaaat aactgtattg aatgcccggc aatggggagc tttgaaaaac
      361 gatgcgctga aagatgcggg taaaaaccct ttttatactc agtcgcaatt agattcactt
      421 ggaaccggaa cagactggca ggcagcagca ttcagagatg ctccggtgca aagccatacc
      481 ctttctattt caaccggcac cgataaaaca aaaattttgc tttccggaaa ttacttccaa
      541 caagacgggg tgattatcaa taccgggttt gacagatatt caggcaaatt aaaccttgac
      601 catgaactga ataagaaatt caggattgga gtttatttaa acggaagtct gacacatgca
      661 gttgtttctc caacaagtac agttcccaat atcttatcta tggttcctgt tgttccggta
      721 agagatgcca acggcaattt tacatcgaac agtagctttg gagcaacggt agcgaatcca
      781 attgcgactt taaccgaagc cattaacgaa accaatacaa cccgtttttt agtgaacggt
      841 tttggagaat ataaaatcat agaagggctt acagctaagg tatcgttggg tacggacatt
      901 ataaacaaca agcaaaataa atatacacca tcaacgcttt atgaaagttc gccgggtgga
      961 aatgcctcga tcggttcatt atcgtcactc aactggttga acgaaaacac gctgaattac
     1021 aagaaaactt taggcgctaa acattcactt gatgtattag ttggtaacac ccagcaacat
     1081 tcgcgcacgg aaacgtttat tgccggtgct tctaactttg taagcgatgc atttacgtat
     1141 aataatatcg ggtcgggaac agtggtcagt attccagctt cggcaagcag cgaatggacc
     1201 cttcaatcat accttgcgag aataaattac ggatatgatg agcgatattt gttgacactg
     1261 acggctcgtg acgatgtctc ttcccgcttt ggtaaaaaca ataaatgggg aactttccct
     1321 tcagctgcat tcgcgtggaa cgcttccaat gaaaagtttc tgaaaggtgt aaagcaaatc
     1381 agctcgttga aattcaggtt gagtgccggt ctgacaggaa atcaggaaat tgatccgtac
     1441 aaatcgcttg cccgtctttc aaactatcaa tactcttttg cgaattcgct tgtaaacggt
     1501 tttgctacga gcagttttgc caacgataac ctgacctggg aaaaaacagc ccaatacgat
     1561 ctcggcgtag acttagcatt atttgcagac agaattcagt tgacttctga tgtgtattat
     1621 aagaaaacgt ccgatttatt actggaagtt ccggtgcctt attcatcaag cctttcaagt
     1681 gcctttcaga acctgggtgt tgtccagaat aaaggtattg aagttggatt gaaaacattg
     1741 aacctgacag gtaaatttga atggaccacc aacttcattt tttctgtaaa ccaaaacaag
     1801 gtattgagtt taggaagggc cgattatttc tttgtaaccg acccggcaag cactaccact
     1861 ttgcctactc aaattattaa agtcggagag tctgttggtt ctttttatat gtatcaagcc
     1921 gatggagttg atgctacaac aggaaatcag aaatacaaag atttgaacaa tgatggaaaa
     1981 ataactcagg atgccgacag aactattgtg ggaagtacac aacccaagtt cttggccagc
     2041 atcaccaata ctttccgtta taagaacttc gatttatcaa ttttcctcaa ttcatcttac
     2101 ggaaacaaaa tctttaactg gacacgggct aatctggaat taggaaccgg ttatacagga
     2161 gcagttgcaa ccttgctaaa ccgctggacg gctacgaata caaacaccga tatgcacaaa
     2221 gcgattgaaa atccggctgt gaccatatcc gatcggtttg tagaagatgg ttcttatcta
     2281 cggctcaaaa acatatcact gggttatact ttccctaaaa agctgatatc taaagtgaag
     2341 attaaagctg cccgggtata tgtgtcaggc t
//
LOCUS       DATDNM010000205         4883 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1841393, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000205 DATDNM010000000
VERSION     DATDNM010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4883
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1841393"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..394)
                     /locus_tag="VI413_03505"
     CDS             complement(<1..394)
                     /locus_tag="VI413_03505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913720.1"
                     /translation="MILRFKEGSEVQKAAVALYNARCDSHAIAVKIIEEATGCTVNKV
                     SQLGMIFFSTQNYDWIPDICRFDDEFKEVPGYTLDNSVYNVFKINKKTSIAKNILIQF
                     RAKVRVIDSVSLNKFGIYTSKDNSWWQWR"
     gene            complement(396..596)
                     /locus_tag="VI413_03510"
     CDS             complement(396..596)
                     /locus_tag="VI413_03510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913721.1"
                     /translation="MKKIIKRMEDLSEMLEETINKRNEQFEAKSEKWQESEKGEQFQE
                     RTDRLQEMYDELYDWTLELGEE"
     gene            complement(845..1402)
                     /locus_tag="VI413_03515"
     CDS             complement(845..1402)
                     /locus_tag="VI413_03515"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6913722.1"
                     /translation="MEKLKCFEFNSRPGAIVEVRHYDEPIYILNEYHRDLVSPLYCEI
                     RERFPDAYADLCPRYKDSLQNTWYFEYRVVCGFIKCNWGSFDNKWDIDENGDWHFEFI
                     VCPLSGECKSENRICNPKEKIPLSDSELRVLLLIARGKRVLEISDELNIAPKTVETHV
                     YNTNRKLGTNSNSQLADYAHRKNLI"
     gene            1744..2175
                     /locus_tag="VI413_03520"
     CDS             1744..2175
                     /locus_tag="VI413_03520"
                     /inference="COORDINATES: protein motif:HMM:NF024835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6913723.1"
                     /translation="MYNLLNIKEIASKKNISIKSLIVQIGISEPGFYKSLENNSMNIK
                     TLAKIAEVMQVSISELISDSAESLTSYELKKNEVVESPVTIYAPPEEKEELKQIMYEQ
                     QIEIATLLKEKVDWMEKAHSLELELERVKNAFAPGKDAIAG"
     gene            2519..3679
                     /locus_tag="VI413_03525"
     CDS             2519..3679
                     /locus_tag="VI413_03525"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEY6913724.1"
                     /translation="MTNLPTLIDSDFQVQYIPARIVDETELYIIYYAFHPLYNALKPK
                     KMRLNHLKKKMSKTALDRYTRKLMNDININLAAGKNPFIGADVTKAYEKLTAAIEIYK
                     IIKEKEMSEDGFRSYKSYCKKLVTWLTNKKLENIYAIQFSEELAEEFMDMVEMDPKCG
                     SRSYNNHFVFYRSLWYWLIKKKYCKENVFLNFTKKKEEEKFRQVVELSTHDKVVMWCR
                     ENNPRFEVVVDLVRAAFIRPAEICRVQIGDIDLFNQVIKIPAGNAKTDNFRFAYLPEW
                     LCVKMAALYEFDRYPMKYYLVSTRLEPGLFKWDTRKLDKIWDKLRDKMELGMDQQLYS
                     YRDTGITALENKSIPESVIRKLTDHKSDRMLRRYVRKPSQELINTVVKQIKE"
     gene            complement(3680..>4883)
                     /locus_tag="VI413_03530"
     CDS             complement(3680..>4883)
                     /locus_tag="VI413_03530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913725.1"
                     /translation="GYTLKNNILNDDPRAKRTYLVNTVDSLKYSDALPDMSVTEFKEA
                     VETFFNVEFVVDPRDKSISIQSLDSSIAEKKVVTLDLALDSYDRDMSQESISSRLDFT
                     QAGYDLPDSDFCKYQKISDDNLLKCTIREFNTFADIVTYVASATSIANKLIIYRDIEK
                     NRDYFVRDSRDGIEAKIEFYSTKVGNYSLICMINKLKYFGTSTDNTLLFSLYPAPLAT
                     DEKRIIYTRSGSAQSEFGLGFQLPQASNSYYVPKAKGFIETIEESGSDTPRNSKLEVS
                     LFTGRIQIYPKTVSEYGNLVNYPFSHIDEYPEFPAPYHDWVNLVYKPAITKTMLLNGP
                     NGVITDYHSSKYVDTSKEYTFTTIDSPDISANNIFVIDNLKYLPISFEWEKGNKKQPV
                     DGKLYRML"
BASE COUNT         1554 a          883 c          858 g         1588 t
ORIGIN      
        1 ttctccactg ccaccaacta ttatcttttg acgtataaat cccaaattta ttaagtgaaa
       61 cagaatcgat aactcttact tttgcacgaa attgaattaa tatgtttttg gcaatacttg
      121 tctttttatt gattttgaaa acattatata ctgaattatc taaagtatac cctggtactt
      181 ctttaaactc atcgtcaaat ctgcaaatat ctggaatcca gtcataattt tgtgttgaaa
      241 agaaaatcat acctaactga cttactttat tgacagtgca accagttgct tcttcaatta
      301 tttttaccgc aattgcatgt gaatcacatc tagcattgta taatgcaaca gctgctttct
      361 gaacttcgct accttcttta aatctaagta tcatgttatt cctcccctaa ttctaaagtc
      421 caatcataaa gttcatcata catttcttga agtctgtcag tacgttcctg aaattgttct
      481 cctttttcag attcttgcca tttctcggat ttagcttcaa actgctcatt tcttttgttt
      541 atggtttctt ctaacatttc tgaaagatct tccattcttt taataatttt cttcattaca
      601 tttagttgtt aagttgatat ataaaaaatt aagttgattc aaagaaaaaa aagaagaggg
      661 ttgccgcgag actttcggct atccagaccc actatcacta ttttaattgg aggtttattg
      721 tcccgtttgc tcttcttttt tatgccggct gatccggcgc attcctgacg cttcaggaat
      781 gggagatgta aaaatgtaaa agttgtatat aaaaaacttc ctgacgcttc agggagtatg
      841 agaatcaaat caggttcttt cggtgagcgt agtcagccaa ctggctgttg ctgtttgtac
      901 caagcttccg gtttgtgttg taaacatgcg tttcaactgt ttttggcgca atatttagtt
      961 cgtcggatat ttccagtact cgtttgcctc gtgcaattaa tagaagtact ctaagttcag
     1021 aatcgcttag cgggattttc tctttgggat tgcaaatcct attttccgat ttgcattcac
     1081 cacttagcgg acaaacgata aattcaaagt gccagtcccc attttcgtcg atatcccact
     1141 tgttatcgaa gcttccccag ttgcatttaa tgaatccgca aacaactctg tattcgaaat
     1201 accaggtatt ttgcaagctg tctttatatc gggggcataa atccgcatat gcatccggga
     1261 atcgctccct tatttcgcaa taaagcggtg aaactaaatc gcggtgatat tcattgagaa
     1321 tgtatattgg ttcatcgtaa tgcctaacct ctactatggc acccgggcgg gaattaaatt
     1381 caaagcactt tagtttttcc atctctgtaa tcttgtatta aattttcgat agttttatct
     1441 ttaaatgctt gaattatttt ttcaattttt tcaatttcag gtattttata atttcggtga
     1501 ttcaatttat aattgaatgt atttcccttg tattcgcata tttcgcaaat aattgatttc
     1561 aagtagcctt tttgagaatt gattctggtt ttgtaataag tgataaacct tattattcgc
     1621 tgattctttg tcattttatt gtgtcatatt agtttttatc actaaattta tactgcaaaa
     1681 ctaaactaaa gttttgttat agcaaacttt tttgaagtat aattttaaac tattttttag
     1741 cgtatgtata acttgttaaa tatcaaggaa atagcatcta agaaaaatat tagcattaaa
     1801 agtttaattg ttcagattgg aatttcagaa ccaggatttt ataagtcact ggaaaataat
     1861 tcaatgaata taaaaaccct tgctaaaatt gctgaggtca tgcaagtctc aatatctgaa
     1921 ttgataagtg atagtgcaga aagcctcaca agttatgagc taaagaaaaa tgaagtggta
     1981 gaaagtccgg tgacaattta tgctcctcct gaagaaaaag aagaactgaa gcaaataatg
     2041 tatgaacagc aaattgaaat tgcaaccctg ctgaaagaaa aagtagactg gatggaaaaa
     2101 gcacactcgc ttgagctcga gcttgagcgt gtaaaaaacg cctttgcacc cggcaaggat
     2161 gcaatcgcag gatagtaatg agaattatat ttagtcggaa atgtacttta ttattaatag
     2221 gttacatggc tttatcagcc tgaaaactgc gccgacattg cgccaccaat tagttgcaac
     2281 tactaaatta tagattcaat agtgattgaa tgtcaacaaa ttaaacgata tatgacgtgt
     2341 ggaaaattga gcggattgtc cctctctctc cgcaaaacca aatgtaaaac gttgtatatc
     2401 accaatatac agcgtttttc ttttttatac tgcgccaaaa gcgcgacacc actttgaaat
     2461 gtggccgtat tttttaataa aacgctgtag aacaacacgt taataaacat taaaagatat
     2521 gaccaactta cctacactaa tcgatagcga ttttcaagtt caatacattc cggccagaat
     2581 tgtcgacgaa acagaacttt acatcattta ttatgctttt cacccgcttt acaatgctct
     2641 aaagcccaaa aaaatgcggt tgaatcacct caaaaagaaa atgagtaaaa cggcactgga
     2701 tcgttatacc cgaaaactaa tgaatgatat caatatcaat ttggcagccg gtaaaaatcc
     2761 ctttattgga gccgatgtta caaaggctta cgaaaagttg acagctgcta ttgaaatata
     2821 taaaatcatc aaagaaaagg aaatgagcga agacggtttc cgctcatata aatcttattg
     2881 caaaaaactg gttacctggc taaccaataa gaaacttgag aatatttacg ctattcagtt
     2941 cagcgaggaa cttgcagagg aatttatgga tatggtagaa atggatccaa agtgtggttc
     3001 tcggtcttac aacaatcatt ttgtctttta tcgtagcctt tggtattggt tgattaaaaa
     3061 gaaatattgc aaagaaaatg tgttcttgaa tttcacgaag aaaaaagagg aagaaaaatt
     3121 ccgacaagta gttgagttaa gcactcatga taaggtagtt atgtggtgta gggaaaataa
     3181 cccacggttt gaggtagtgg tcgaccttgt gcgagctgct ttcatccgtc cggcagaaat
     3241 ttgcagggtt caaattggcg atatcgatct attcaaccag gtgatcaaaa tccctgcagg
     3301 gaatgcgaaa acggataact tccgttttgc ttatctcccg gagtggcttt gcgtgaaaat
     3361 ggctgcatta tatgagttcg accgatatcc aatgaaatac tatttagtat caaccaggct
     3421 agaaccgggg ctatttaaat gggacacacg aaaactggat aagatttggg ataaactccg
     3481 ggataaaatg gaattgggaa tggatcagca gttatactcg tatcgcgata cgggtataac
     3541 tgctctggaa aataaatcga ttccggaatc tgtgatccga aaactaaccg atcataagtc
     3601 tgacagaatg ctccggagat atgttcgaaa accgtcacag gaactgataa atacagtggt
     3661 aaagcaaatt aaagaataat taaagcatcc gataaagctt tccatcaacc ggctgttttt
     3721 tgttaccctt ttcccattca aatgaaatcg gcaaatattt cagattatca ataacaaaaa
     3781 tgttatttgc tgaaatatcc gggctatcaa tagttgtgaa agtatattct ttcgatgtat
     3841 cgacatattt cgacgagtga taatctgtta taactccatt cgggccattc agcaacattg
     3901 ttttggtaat tgccggctta tataccaaat taacccaatc atgatatgga gctggaaact
     3961 caggatattc gtcaatatga gaaaaaggat aattcacaag attaccatat tcgctaacag
     4021 tcttcgggta tatttgaatt ctgccggtga agagtgacac ttcaagtttg ctatttcttg
     4081 gagtgtccga tccggattct tctattgttt caataaatcc ttttgctttc ggaacataat
     4141 aagaatttga cgcctgagga agttggaacc ctaatccgaa ttcagactgt gcactacctg
     4201 atcgggtata aatgattctc ttttcatctg tagccaaagg tgccggatac aaagaaaaaa
     4261 gaagagtatt atctgttgaa gttccaaaat actttaattt atttatcatg caaatcaggc
     4321 tataattacc gactttggta gaatagaatt ctattttagc ctcaatacca tccctcgaat
     4381 cccttacaaa ataatccctg tttttctcaa tatctctata aatgatcaat ttatttgcaa
     4441 ttgaagttgc actagctaca taagttacaa tatctgcaaa tgtattaaac tcgcggatag
     4501 tacatttcaa aagattatca tcacttattt tttgatattt acaaaaatca gaatccggaa
     4561 gatcataacc tgcctgagta aaatccaatc ggcttgatat tgattcctga ctcatatcac
     4621 gatcatagct atccagtgct aaatcaaggg ttaccacttt tttttctgca atgcttgaat
     4681 ccaggctttg aatggaaatt gatttatccc tcggatcaac aacgaattcg acattaaaaa
     4741 atgtttcaac tgcctcttta aattcagtca ctgacatgtc aggaagtgca tctgaatatt
     4801 tcaacgaatc aactgtatta accagataag ttcttttggc acgtgggtca tcgttcaaaa
     4861 tgttattttt gagtgtataa cct
//
LOCUS       DATDNM010000206         3351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_880132, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000206 DATDNM010000000
VERSION     DATDNM010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3351
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880132"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..623)
                     /locus_tag="VI413_03535"
     CDS             complement(<1..623)
                     /locus_tag="VI413_03535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-xylosidase"
                     /protein_id="HEY6913726.1"
                     /translation="MKKTILFSVCFLLAASLFSFSQSQKRILGDPVDMSLDFHDFHNT
                     FFFADKLVSFDPLTAKGKISWKRSTLYTRQAFDVNTILPQDLTMLDFPGAAYQQNPEL
                     SFTVDFISPRTVRIRMLTTPVEPKPFDSPMLVKEPGKDSSWKYAKTKTGHSYSSAFGK
                     LLIEENPFRIVLMDANGRRLTDTWRWCDNDSSQVKILPFNFIKKGID"
     gene            complement(782..2983)
                     /locus_tag="VI413_03540"
     CDS             complement(782..2983)
                     /locus_tag="VI413_03540"
                     /inference="COORDINATES: protein motif:HMM:NF020337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CotH kinase family protein"
                     /protein_id="HEY6913727.1"
                     /translation="MNISRLIKATLFVLIGINFTSIKAQTHWESMVLESDTWKYLPAT
                     SEPAANWYQPGFSDTSWKSGAGGLGYADGDDATTVSACNSLYIRTQITLPDVSIVKDL
                     LLDIDYDDAFVLYINGVECARSSNISGSFPAYNATLTTDHEARMYSGGSPERFQLKTS
                     SLVKGQNVFALQILNQTVSSTDLSARVFIHAKINYTSVMYHATPSWFVAPAISDSNLP
                     IIFISTNNQTIIANTKIMADMKVLNSAAGINYANDTTYEYNNKVGIEIRGNTSAGFPK
                     KSYTVETRNPDSTNLNVSLLGMPNENDWIFHGPYPDKSLMRNVLAYHLGNMTGRWSPR
                     THFFELYINGTYNGVYALVEKIKNDKNRCNLATLNPQDTIGDELTGGYILKIDRPEAT
                     DVDGKNYWISPYRAPTTLQQKVYFLYVDPDGENIVQKQRDYIQKYITDFENAMYSSSY
                     KDRAAGYYPYVDLQSFADYYIITELSRNLDGYRISTFLHKDKDSKGGKLTMGPFWDYD
                     ICFGNANFFSAGNTSGWVIDGMGNGDAYAMPFWWQKFRLDPYFNSVLKQRWNTLKTKY
                     INTTYLNHFIDSCAYDLRDAQVRNFTKWNILSTYIWPNNYVGGSYANEIIYLKNWLRD
                     RISWMDSQMQPIVDITGVEAKNDLVMDLVTYPNPFTERINFKYYVANGGKLEIIIHDM
                     LGRQVLHYAETVEPGIHTVPLTIDKANAANVYVYQVLIDEKYRTTGKLVRQ"
     gene            complement(3223..>3351)
                     /locus_tag="VI413_03545"
     CDS             complement(3223..>3351)
                     /locus_tag="VI413_03545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005939326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HEY6913728.1"
                     /translation="GIYLKEDKFVHTSTSKGVMISSLDEDYFRKTWVCGGRVKHYK"
BASE COUNT          958 a          707 c          705 g          981 t
ORIGIN      
        1 ttatctatcc cttttttaat gaagttgaaa ggaagtattt ttacctgcga tgaatcgtta
       61 tcgcaccaac gccacgtgtc ggtcaatcgt cgcccattgg catccatcaa cacaatgcgg
      121 aagggatttt cctcaatcaa cagttttcca aatgcactgc tgtaactgtg ccccgttttg
      181 gttttggcgt atttccacga actgtcttta cccggctctt tcaccagcat gggcgaatcg
      241 aagggttttg gctcaacggg tgtggtgagc atacggatac gaactgttct ggggctgata
      301 aaatctaccg tgaaactcag ctcggggttt tgctggtagg cagccccggg gaagtcgagc
      361 atggtgaggt cttgaggcaa aatggtattg acatcaaaag cctgccgggt ataaagcgta
      421 gagcgtttcc aactgatttt acctttggct gtaagtgggt cgaaacttac cagcttatcg
      481 gcaaagaaaa aagtgttgtg gaaatcgtga aagtcgaggc tcatatctac gggatcaccg
      541 aggatacgtt tttgactttg actaaacgaa aacagactag ctgctaacag aaaacagact
      601 gaaaagagaa tcgttttttt cattttatac attgctttaa ggaaaaatgc aaaaatagga
      661 gatttttacg aaagccaact gcttaatatg ttttcaataa ggggttgaaa ttgacaaaat
      721 gaaaaaagaa aacgcggatt tagcctgttt agccgaaatc cgcgttctat tcctttaaaa
      781 actattgccg aacgagctta cccgttgtcc ggtatttttc atcgatcaga acctgataga
      841 catatacatt tgcggcgtta gctttatcta tcgtaagtgg aacggtatgt attccgggtt
      901 ctaccgtttc ggcataatgg agcacctgcc ggccaagcat atcgtggata attatctcca
      961 gtttaccccc attggctaca tagtatttaa aatttatcct ttcggtgaac ggattcgggt
     1021 aagtaaccaa atccataacc agatcatttt tagcctcaac accggtaatg tcaacgatgg
     1081 gttgcatttg agaatccatc cacgagattc tgtctctcaa ccagtttttc aggtagatta
     1141 tttcattggc atacgatccg cccacataat tattcggcca aatataagta cttaagatat
     1201 tccatttagt gaagttacgt acctgggcat cgcgcaggtc gtaggcacaa gaatcgataa
     1261 agtggttcag gtatgtggta ttgatatatt tcgttttcaa ggtattccat cgctgtttca
     1321 aaacagaatt gaaatatgga tcgagcctga atttctgcca ccaaaaaggc atagcgtaag
     1381 catctccgtt acccattcca tcaatgaccc agcccgatgt atttccggct gagaagaaat
     1441 tggcattacc gaaacaaata tcataatccc aaaatggacc catggttagc tttcctccct
     1501 tactatcttt atccttgtgt aaaaatgtac tgatacgata tccatccagg tttctcgata
     1561 gctcggtaat aatatagtag tcggcaaaag attgcaaatc gacatacggg taatatcccg
     1621 ctgcacgatc tttatagcta ctgctataca tcgcattttc gaaatcagta atgtattttt
     1681 gaatgtaatc ccgttgtttc tgaactatat tttcaccgtc cgggtccaca tacagaaagt
     1741 acactttctg ctgaagggtt gtgggagccc tataaggcga aatccaataa tttttcccat
     1801 ccacatcagt tgcttctggg cggtcgattt tcaatatata acctcctgta agttcatctc
     1861 caatagtgtc ctgcggattc agggtagcca aattgcaccg gtttttatcg ttctttattt
     1921 tttcgaccaa tgcatacacc ccgttataag tgccgttgat atacagctca aaaaaatgcg
     1981 tccggggcga ccatcttccg gtcatgttac ccaaatgata tgccagcacg ttccgcataa
     2041 gcgatttatc ggggtaaggg ccgtgaaaaa tccagtcgtt ttcattaggc attcccaaca
     2101 gacttacatt caggtttgtc gagtccggat tgcgggtttc caccgtatag ctttttttag
     2161 ggaaacctgc cgaagtgttt ccgcggattt caattcctac tttattattg tattcataag
     2221 tagtatcatt ggcataattt attccagctg cactattaag cactttcata tccgccatga
     2281 tcttggtatt cgcaattatc gtttggttat tggtagaaat aaaaatgata ggcagatttg
     2341 aatcactgat agcaggcgcc acaaaccacg agggtgtggc atgatacatt acggaagtgt
     2401 aattgatttt agcatgaata aatacccttg ccgacaaatc ggttgagctg acagtttgat
     2461 ttaaaatttg cagggcgaaa acattttgtc ctttaaccag cgaagacgtt ttaagctgaa
     2521 atcgctcggg actaccaccc gaatacattc tggcttcatg atcggtggtc agcgttgcat
     2581 tataggccgg aaatgacccg ctgatattcg aagaacgtgc acattccacc ccgttaatat
     2641 acaaaacaaa ggcgtcgtcg taatcaatat ccagcaataa atctttgaca atgctcacat
     2701 cgggcaaagt aatttgggtg cgaatgtaga gtgaattgca ggccgaaaca gtggtggcat
     2761 catcgccgtc ggcataaccc agacctccgg cacccgattt ccaggatgtg tcgctaaagc
     2821 cgggttggta ccagtttgct gcaggctctg aagtagcagg aaggtatttc caggtgtcgg
     2881 attccagaac cattgactcc cagtgagtct gtgcttttat ggaagtgaag ttgattccaa
     2941 tcaggacaaa aagcgttgct tttattaaac gtgagatatt cattgtatca gaataacagg
     3001 acattaagat tatatagtac aaagtaaata ataatattcc ggatatactg aaaaacagcc
     3061 tgattatgca acaaaaagaa acttttgtcc accaaaatga ttttttttaa aacaaatttt
     3121 tgtgctgatt gacggcttgg ttatttcctt taaaatagca agcaaaaaaa taggagtatg
     3181 cgaaacacga atatctggct ccaccgggcg gcacagccgg cattatttgt aatgctttac
     3241 ccttccgcca caaacccagg ttttccggaa atagtcttca tccagactgc ttatcataac
     3301 gcctttggac gtggaagtat gcacaaattt atcttccttg aggtaaatgc c
//
LOCUS       DATDNM010000207         2579 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1948797, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000207 DATDNM010000000
VERSION     DATDNM010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1948797"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2579
                     /locus_tag="VI413_03550"
     CDS             <1..>2579
                     /locus_tag="VI413_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY6913729.1"
                     /translation="MRPGARWWWLGSAVDKANLTYNLEEYARVGLGTVEITPIYGVQK
                     NDANDIQFLSPKWMEMLQHTMSETKRMGMQTDMNTGTGWPFGGPEVTIEDAASKLIIR
                     EYQVSGTQLFSETIKPTEKDQQAAKLQRVMAFSEKKAIDLTKTVDSNGKISWKAPKGD
                     WKIIAAFNGKTFQKVKRAAPGGEGYVMDHFSKRAVKNYFNRFEKAFAASNTTYPHNFF
                     NDSYEVYGADWTEDFFEQFYTRRGYKLEEHLPAFLALERTDETARLVSDYRETMSELL
                     LENFTKQWTDWAHLHGSKTRNQAHGSPGNLIDLYATVDVPECEGFGLSNFGINGLRTD
                     SLTIKNFSDISMLKYASSAAHISGKQFTSSETFTWLTEHFRTSLSQCKPDLDLMFVAG
                     VNHMNFHGTTYTPKEAAWPGWKFYASIDMSPTNSFWHDAPALMSYITRCQSFLQSGKP
                     DNDFLIYLPVYDIWNEQTGRLLQFGIHDMDKKMPKFIKMVHSIYENGYDVDYISDRFI
                     LSATCVDGKIVTESGARYKALILPAIKKMPANVLKHIAELTAQGAKIVFMENYPGDVP
                     GYSNLKKRQVELKGILKKLSLVSDFSKTSVQQYKNGKIITGSDYKATLEDIGVQPEEL
                     ITKFGLHAIRRSNDEGYHYFISCLQKKDIDGWITLSVPAVSAEIFNPMTGEKGKADIR
                     QQDGKTQVYLQLKSGESLILKTFTKEDVQIPAWKYLKGNAQTVEITNPWKLHFEKSEP
                     LVKDTFKLNTLQSWTELGNETLKVNCGAGIYETTFNLKSVSKSANYVLDLGDVRESAH
                     VFVNGQDAGIIWAVPFECNITKYLKDGDNTLRIEVTNLPANRIADYDRRKVDWRIFKE
                     INI"
BASE COUNT          831 a          567 c          568 g          613 t
ORIGIN      
        1 aatgcgcccc ggagcacgtt ggtggtggct gggaagtgcg gttgacaaag ccaatctgac
       61 ttacaacctg gaagaatatg cccgcgtagg actgggaact gtggaaatta cacctattta
      121 tggcgttcag aaaaacgatg cgaatgacat acaatttcta tcgcccaaat ggatggaaat
      181 gcttcaacac accatgagcg aaacaaaacg catgggcatg caaaccgaca tgaacaccgg
      241 aaccggctgg ccttttggcg gaccggaagt gacaatagaa gatgctgctt cgaaactgat
      301 tattcgtgaa tatcaggttt cgggcacaca acttttttct gaaacaataa agccgacaga
      361 aaaagatcaa caagctgcaa aactgcaacg tgtaatggct ttctcagaaa aaaaggcaat
      421 tgaccttaca aaaaccgtgg atagcaatgg gaaaatttcg tggaaagcgc ccaaaggcga
      481 ctggaaaatc atagctgcat tcaatggaaa aacattccag aaagtaaaac gggcagctcc
      541 aggcggcgaa ggttatgtaa tggaccattt ttcaaaacgt gccgtaaaaa attatttcaa
      601 ccgcttcgaa aaagcgtttg cagcaagtaa tacaacctat ccgcacaatt tcttcaacga
      661 ctcatacgaa gtgtatggcg cagattggac cgaagacttt ttcgagcaat tctacacccg
      721 ccgcggatac aaactggaag aacatttacc tgcattccta gctttggaac gcactgacga
      781 aacggcccgg cttgtgtcgg attaccgcga aaccatgtcg gaattattgt tggaaaactt
      841 tacgaaacaa tggacagact gggcacacct gcacggcagc aaaacccgca accaggcaca
      901 tggttcaccc ggaaacctga ttgacttgta cgctaccgta gatgttcctg agtgcgaggg
      961 attcggttta tcaaactttg gaataaacgg tttgcgtacc gattcactga ccattaaaaa
     1021 cttctcggac atttcaatgc taaaatatgc ttcgtcggca gcacatattt ccggaaaaca
     1081 atttacgtca tcggagactt tcacctggct gacagagcat ttccgcacgt cgttatcgca
     1141 atgcaaaccc gatctggacc tgatgtttgt agccggcgta aaccacatga acttccacgg
     1201 caccacttac acccccaaag aagctgcttg gccgggctgg aagttttacg cctctattga
     1261 tatgtcgcca acgaacagtt tttggcacga tgctccggca ttgatgagct atattacccg
     1321 ttgccagtcg ttcctgcaaa gcggaaaacc ggataatgat tttctgattt acctgcctgt
     1381 gtacgatatc tggaacgaac aaaccggacg tttgctgcaa tttgggattc acgacatgga
     1441 taaaaaaatg ccgaaattca tcaaaatggt tcattctatt tacgaaaatg ggtacgatgt
     1501 ggattatatt tccgaccggt tcatcctttc ggcaacttgc gtcgacggca aaatagtaac
     1561 cgaaagcggt gcccggtata aagcattgat tttacctgcc ataaaaaaaa tgccggcaaa
     1621 cgtattgaaa cacattgctg agttgaccgc acagggagca aaaattgtgt ttatggagaa
     1681 ctaccccgga gatgttcccg gttattccaa ccttaagaaa cgtcaagtgg aattgaaagg
     1741 catacttaaa aagctatcgt tggtttccga ctttagtaaa acatcagttc aacagtataa
     1801 aaatggaaaa ataataaccg gttccgatta caaagccaca ctcgaagaca ttggcgtaca
     1861 accagaagaa ctgattacga aatttgggct tcacgccatc cgccgttcga acgacgaagg
     1921 atatcactat tttatttcat gtttgcaaaa gaaggatatt gatggttgga ttacgttgtc
     1981 tgttccggct gtttcagcag aaatatttaa cccaatgaca ggggaaaaag gcaaggcaga
     2041 cattcgtcaa caagatggaa aaacacaggt ttacctgcaa ctgaaatcag gagaatcgct
     2101 gattctgaaa acatttacga aagaagatgt tcaaataccg gcatggaaat acctgaaagg
     2161 caatgcgcaa acagtggaaa taaccaatcc atggaaatta catttcgaaa aaagcgaacc
     2221 actggtaaaa gacacattta agctgaacac actccaatcg tggaccgaac ttggcaacga
     2281 gacattgaaa gtaaactgcg gagcaggcat ttacgaaaca acatttaatc tgaaatcagt
     2341 ttcaaaatcg gccaactacg tacttgattt aggtgatgtc agggaaagtg ctcacgtatt
     2401 tgtaaacggt caggacgctg gaattatttg ggcagttcca tttgaatgta atatcactaa
     2461 atatcttaaa gatggcgata atacacttcg cattgaagtc accaacctgc ctgccaaccg
     2521 cattgccgat tacgaccgcc gcaaagttga ctggcgtatt ttcaaggaaa tcaatatcg
//
LOCUS       DATDNM010000208         2272 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1735367, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000208 DATDNM010000000
VERSION     DATDNM010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2272
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1735367"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VI413_03555"
     CDS             <1..255
                     /locus_tag="VI413_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913730.1"
                     /translation="CKAYTESCNFVNKQPEEAANLLVKHKMSSDLVIAKQSIPLCNIN
                     YVSSFAIAQEIESYLRIFYKFNPKSIGGRMPDKDFIYQSY"
     gene            287..1672
                     /locus_tag="VI413_03560"
     CDS             287..1672
                     /locus_tag="VI413_03560"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6913731.1"
                     /translation="MKKNSLIPILLSILFLGVGWELIALQIGFPAIFPSLIDLFKETG
                     RLIVSDNFFIEITFTILRGIFGIAFAFGFAFILATIAAFSSFWKAFLHPLIVVSRSIP
                     VISLVLIALLWFSPTQLPVFIALITMFPILYQNILTGLEQTDKRYLEMGSVFGKSKSN
                     QYFKIYLPSAKTVIYDGIKTAMGFGWRAIIIGEVLAQPIHGIGTSMKQAQVYINVSEL
                     IAWTVIAVGISYFFEFIIRQIQKIHIEKYFPEVIVTEVNRRFQTVDMFEVRVVNLEKK
                     FNDTMVFNSLNASFNSKNIACINGPSGRGKTTLLRLIAGLEKPDAGEIKIADNLQFGY
                     SFQDVRLLPWMTVAENIAYVLPKHMHKQEVSNLFFYLLKNMELTDQAHKYPHELSGGQ
                     QQRVGLARALATKPDVLLLDEPLTGLDNDLKIRITDFLSVWIQENKPLVIWSTHENVN
                     LKGLEVIDYEL"
     gene            complement(1667..>2272)
                     /locus_tag="VI413_03565"
     CDS             complement(1667..>2272)
                     /locus_tag="VI413_03565"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005939236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dimethylallyltransferase"
                     /protein_id="HEY6913732.1"
                     /translation="GGTGMYIEAVLKGYKLPAVPENKALRKSLENKSLEELTGILSQY
                     VPLHNKSDLDSAKRAIRAIEIAEYSTKQTPEFNEFQPINSLIIGIDLDREVRRQKITQ
                     RLHARLKEGMVEEVKALLDKGITAEDLIYYGLEYKFVTQYLIGELSYKEMFSQLEIAI
                     HQFAKRQMTWFRGMERRGFTIEWISAELTTEEKVNKIMSFL"
BASE COUNT          644 a          413 c          443 g          772 t
ORIGIN      
        1 tgtaaggcat ataccgaaag ctgcaatttt gtgaataaac agcctgaaga agcggctaat
       61 ttacttgtaa aacataaaat gtcatctgat ttggttattg caaaacaatc cattcccttg
      121 tgcaatatta attatgtgtc atcatttgct atagcgcaag aaatagagag ttatctacgt
      181 attttttata aattcaaccc gaaaagcata ggtggaagaa tgccggataa ggattttatt
      241 tatcaaagtt attgaaaaga aataaacatt caagaatccc ggaaacatga aaaaaaacag
      301 ccttattcca atcttacttt ccattctgtt tctgggagtg ggttgggagc tgattgcttt
      361 acaaatcggt tttcctgcta ttttcccttc gttgattgat ttatttaaag aaacgggtcg
      421 gcttattgtt agtgataatt tctttattga aataactttc accattttac gtggaatttt
      481 cggtattgct tttgcctttg gctttgcatt tatacttgcc acaattgctg ctttttcatc
      541 attttggaag gcttttcttc atccgctaat tgttgtaagc cgttcaatac cggttatttc
      601 attggttttg atagctttat tgtggttctc ccctacccaa ctacctgttt ttattgcgct
      661 gattactatg tttcctattc tttatcagaa tattctcacg ggacttgagc aaacggataa
      721 gcgctattta gaaatgggct ccgtgtttgg caaatcgaaa tcaaaccagt atttcaaaat
      781 ttatcttccg tctgccaaaa cagtgattta tgatggaata aaaacagcta tgggctttgg
      841 gtggcgtgcc attattattg gcgaagtact ggcgcaacct atacatggaa ttgggacttc
      901 catgaagcag gctcaggttt atattaatgt ttcggaacta attgcctgga ctgtaattgc
      961 cgttggaatc agttatttct ttgaatttat tatcaggcaa attcagaaaa ttcatattga
     1021 aaaatacttt ccggaggtta tagtaactga agttaataga agatttcaaa ccgttgatat
     1081 gtttgaagtt agagttgtga atttggagaa gaagtttaat gatacaatgg ttttcaattc
     1141 gcttaatgca tcgttcaatt cgaagaatat tgcctgcatc aacggacctt ccggacgagg
     1201 aaaaacaacc ttgctccgac tcatagccgg gcttgaaaaa cctgatgccg gtgagattaa
     1261 gatagctgat aatttacaat ttggttattc atttcaggat gtacgtttac tgccgtggat
     1321 gacagttgct gaaaatattg cttatgtact tccaaaacat atgcataagc aggaagtcag
     1381 caatttgttt ttttacctgt tgaaaaatat ggaattaacc gatcaagcac ataaatatcc
     1441 acacgagtta agcggtggtc agcaacaacg ggtaggtttg gctcgagcac tggctacaaa
     1501 gccagatgtt ttattgcttg atgaaccttt aaccggactt gataacgacc tgaaaataag
     1561 aattacagac tttttatctg tatggattca ggaaaataaa ccattggtaa tttggtcgac
     1621 acatgaaaat gtaaatctga aaggtttgga ggttatcgat tacgagctat aaaaaactca
     1681 ttatcttatt cactttttcc tctgttgtca attctgcaga aatccattcg atggtaaatc
     1741 cccgacgttc cataccgcga aaccaggtca tctgtcgttt ggcaaactga tggatcgcaa
     1801 tttcaagttg tgaaaacatt tctttgtagc ttagttcgcc aatcaggtat tgtgtaacaa
     1861 acttatattc caagccgtaa taaatcaggt cttcagctgt aattcccttg tcaagtaacg
     1921 cttttacctc ctcaaccatt ccttctttca gtcttgcatg tagtcgttgt gtaattttct
     1981 gccggcgtac ttccctgtcc aggtcgatcc caataattaa gctgttaatt ggttgaaatt
     2041 cattgaattc cggagtttgc tttgtgctgt actctgcaat ttcaatggcg cgaatggccc
     2101 tttttgctga atcaaggtcg gacttgttat gaagaggaac gtattggctt aatatgccgg
     2161 ttagttcttc taacgatttg ttttcgagac tttttcgaag tgctttgttt tcaggaactg
     2221 ccggtaattt ataccctttc agtactgctt cgatatacat gccagtgcca cc
//
LOCUS       DATDNM010000209         2958 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_988066, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000209 DATDNM010000000
VERSION     DATDNM010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2958
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_988066"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(36..449)
                     /locus_tag="VI413_03570"
     CDS             complement(36..449)
                     /locus_tag="VI413_03570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913733.1"
                     /translation="MPQRDYLMQQLEEMGYFLASLIRRVMKLKDDKKEDQITGALHDM
                     IQEKLSFSLDDALTIDNEGFVALMKEHFKTEDHLEKMAELLLITGKSIHPLSLNRINY
                     LGKSLYLYNYLQGSSINYSFERRDRIVEIQQLLNG"
     gene            696..1388
                     /locus_tag="VI413_03575"
     CDS             696..1388
                     /locus_tag="VI413_03575"
                     /inference="COORDINATES: protein motif:HMM:NF036640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NigD-like C-terminal domain-containing protein"
                     /protein_id="HEY6913734.1"
                     /translation="MKTKKLIFFLMMVMTLGFLSGCNFLNEDDNSNSHKDVWAGFGLV
                     QKDTASDSFTVELDNGAVLVPSNASYWKDDVHDKQRVLANFTMLDDQQSPDSTKQYNV
                     RINSLRNILYKGILDITPAMEDSIGNDPIYVKDHWQHKNMLNFELQYFGGSKIHYINL
                     VRQPNASATEPVVLELRHNNNDDLDRINMSAVVTFDLSSLKVAGKDSVTFKVIAKGFN
                     DYNFEYTGVYKY"
     gene            complement(1626..1699)
                     /locus_tag="VI413_03580"
     tRNA            complement(1626..1699)
                     /locus_tag="VI413_03580"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1663..1665),aa:His,seq:gtg)
     gene            complement(1906..2304)
                     /locus_tag="VI413_03585"
     CDS             complement(1906..2304)
                     /locus_tag="VI413_03585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913735.1"
                     /translation="MKNILSKLFKFTNVNLPPPVKSAFAEKFGESINVEWLQIDDFYE
                     AIFYLEDMEHIARFDNLGNILNVKRNLSIHDIPDQIKDKAAQHGELMNVIEISEEQIV
                     AYELIVRDETLTRFSMLLNEKGGLIHKSKL"
     gene            complement(2427..>2958)
                     /locus_tag="VI413_03590"
     CDS             complement(2427..>2958)
                     /locus_tag="VI413_03590"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6913736.1"
                     /translation="VHLIMNSGNQELFEMLYSRYFKKVKDKCYSFLKDSKQAEEFAND
                     ILTKAYEKIPGFKGNSSFSSWLYSITYNYCIDYLRVKKKLHYPNWNSSNEIPEIIDES
                     ETDFEEADYENLMAILELVHPEEKVLLLMKYQDNLPIKHIAKTLRISEDAVKMRLKRA
                     RTRVIYMYQQKFNRNN"
BASE COUNT          907 a          521 c          516 g         1014 t
ORIGIN      
        1 atataatgtg tttatattca aatacgttac acgagctaac cattaagcag ctgttgaatt
       61 tcaacaatcc gatcccttcg ctcaaaagag tagttgatgc ttgatccctg taaataattg
      121 taaagataaa gtgatttccc aagataattt atcctgttga gcgataacgg atgaatcgac
      181 tttccggtaa tcaagagcag ctcagccatc ttttccagat ggtcctctgt cttgaaatgc
      241 tctttcatca aagccacaaa accttcattg tcaatcgtaa gggcatcatc aaggctaaat
      301 gacagttttt cctggatcat atcatggagc gcacctgtaa tttgatcttc ctttttgtcg
      361 tcttttaact tcatgacccg gcgaattaag ctggccagaa aatatcccat ttcctccagt
      421 tgctgcatca gataatcacg ttgtggcata tgcgtaagtt tttgatgttc aatgataaac
      481 tttaacacta caaaaatacc aaaaacattt tgtctgctgt tagaatattg ttatccccct
      541 tttaataaaa aatgaaggta cacgcaactt ttttgtgctt tctgctatct atcattcaac
      601 aaacaggcat ttaaaacgta ttgtattgtc gttacaagcc taaataattt gctttgatta
      661 aaaacagaaa caaataacaa cttaattatt taaacatgaa gacaaaaaag ttaatattct
      721 ttttaatgat ggttatgacg ctgggctttt tatcaggttg taattttttg aatgaagatg
      781 ataacagcaa ttctcataag gatgtatggg caggttttgg ccttgttcag aaagatactg
      841 catccgattc attcactgtt gaacttgata atggcgcagt attggtccca tcaaatgctt
      901 cctattggaa ggatgatgtg catgataagc aaagagtatt ggccaatttt accatgttag
      961 atgatcagca gagccctgac agtaccaaac agtacaatgt gaggattaat tctctgcgca
     1021 atattctcta taagggtatt ttggatatta ctccagccat ggaagacagc ataggtaatg
     1081 accctatcta tgtgaaggat cactggcagc ataaaaatat gctgaacttt gaattacagt
     1141 attttggggg aagtaagatt cattatatca acctggtaag acaacccaat gcttctgcta
     1201 ccgagcctgt agttcttgaa ctaaggcata ataacaatga cgatctcgat cgtattaaca
     1261 tgtcggctgt ggtaactttt gacttaagtt ccttaaaggt ggcaggcaag gattctgtta
     1321 cattcaaagt tattgccaaa ggttttaatg actataactt tgaatataca ggggtttata
     1381 agtattaaag aaattgatca atttggttta cctaaagggc ctgttagcaa taacaggctt
     1441 ttttttgttg aggtttttac aactaatatt ttctcattcc tatcaaggtc tttaatatcc
     1501 ttagggtttt gggggacata taggccattt attaattacc ttgcgcactc cacttgatat
     1561 ttacaactcg aaattaaaaa agaaacccaa tcaactgttt ctcagttaat tgggttaata
     1621 ttttgggtgg atgatggggt ttgaacccac gacccctgga accacaatcc agtgctctga
     1681 ccaactgagc tacaaccacc attttgaatt tgcggttgca aatatagtat ttaaattctt
     1741 acttgcgcaa tagagaagga aggattttga ctactaattt tagatttttt tctaattgga
     1801 aaaacttaat agattccttg tttggtagat ctaaaagaat tggttgacat ttagtttttt
     1861 gcatcaggct taaatggtgc agcgcaaaaa atacaaacct ttaatttaaa gcttggattt
     1921 atgaatcaat ccaccctttt cattcaagag cattgaaaaa cgagtaagag tttcatcgcg
     1981 tacgatcagt tcataggcca caatctgttc ttcgcttatt tcaataacat tcatcaattc
     2041 tccatgctga gcagctttat ccttgatttg atccgggatg tcatgaatgg ataaattcct
     2101 ttttacgttc agaatattac ccaaattatc aaaacgtgca atgtgttcca tatcttccaa
     2161 ataaaaaatc gcttcataaa agtcgtcaat ctgtagccat tctacattaa ttgattcacc
     2221 gaacttttct gcgaaagcgc tctttaccgg gggaggtaaa ttgacattcg taaatttgaa
     2281 tagtttgcta agtatgtttt tcatgaaatc aatagtttat ttagcttaga aatttttgta
     2341 ttcatagcat taagttatga ataaatattt cttatctttt tactatagac gagaatctaa
     2401 taaatagtaa cgctacttta tcggtattaa ttattgcggt tgaatttttg ttgatacata
     2461 tagattacac gggttctggc cctttttaat ctcattttaa cagcatcttc gctaatacgc
     2521 agtgttttgg cgatatgttt gatgggtaag ttgtcctggt atttcattaa taacagtact
     2581 ttttcttccg gatggaccaa ttccaggatg gccatcaggt tttcatagtc cgcttcttca
     2641 aaatcggttt ccgattcgtc gatgatttca ggaatttcgt tactgctatt ccagttgggg
     2701 taatgcaact ttttcttaac ccttaaataa tcgatacaat aattataggt gatggaataa
     2761 agccaggacg aaaaagaaga atttccttta aatccgggta ttttttcata agccttggtt
     2821 aaaatatcat ttgcaaattc ttccgcttgt ttactgtcct ttaaaaagct gtaacattta
     2881 tcttttactt tcttaaagta ccgtgaataa agcatttcaa acaattcctg gttgccggaa
     2941 ttcattatta aatgaaca
//
LOCUS       DATDNM010000210         3236 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_667020, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000210 DATDNM010000000
VERSION     DATDNM010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3236
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_667020"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1530)
                     /locus_tag="VI413_03595"
     CDS             complement(<1..1530)
                     /locus_tag="VI413_03595"
                     /inference="COORDINATES: protein motif:HMM:NF019583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase domain-containing protein"
                     /protein_id="HEY6913737.1"
                     /translation="MKPDKHYFALIILLASAFVSAAASNNSKVNLFIGTSGDNGQVDP
                     GATVPFGMVRVCPDSDPRSHAGYDYSVAKVSGISVNRMSGVGCSGAGGNFSIRPADLD
                     YDLRIVKTTEKAEPGYYETCFNNGVKAQLTATRNIAVEQYVFPKNKEIKLTFNLGASF
                     ERTVEEQHKQVSGNELEGFVVCANVCGRGQYKLYFNMITDQTFFIKNDVYRSMQLSFS
                     ESKTNKVECRIAVSSVSLAAARKENQLLQKTTFSHIKSDAARLWEQKLSRFNVEGGTL
                     DDKTIFYTSLYRVYLSPANVTSSEGQYLATNGQINESGEDTYYSSWSLWDTYRTKFPM
                     LALLEPNAMSHMAQSLVRLYQTGKANWSTDSEATPTVRTEHAVILLLDAYRKGIKGID
                     FNACYPQLCKEANELPLNSPDQKLESSADLWALAQIAEITGKPEEAAKYRTQSENLFT
                     DTWQKEFRYINPTFTKMGGNGLYQGTRWQYRWAVPQFLAKMEEWSTTDSLKNQLTYFF
                     DN"
     gene            complement(1613..2602)
                     /locus_tag="VI413_03600"
     CDS             complement(1613..2602)
                     /locus_tag="VI413_03600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005775959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6913738.1"
                     /translation="MKNSKSKTLSLLLVLFVISFQTVSFAQKSGNPLFKGWYADPEGT
                     ILNNQYWIFPTYSAPYEKQVFMDAFSSPDLVKWTKHSHIVDTANIKWAKKAMWAPAII
                     RKDKRYFLFFSANDIQNNNSEGGIGVAVSDKPEGPFKDYLGKPLLDKFHNGAQPIDQF
                     VFQDKDGQYYMIYGGWGHCNIVKLQSNFKAFIPFADGTTFKEITPQGYVEGPVMFRRN
                     NKYYFMWSEGGWTGPDYRVAYAIGDSPFGPFTRIGLVLQQDARIATGAGHHSVINVPG
                     TDEWYIIYHRRPLGETDGNSRVTCIDKMEFDATGNIKPVVMTFEGVSSRLLKK"
     gene            complement(2714..>3236)
                     /locus_tag="VI413_03605"
     CDS             complement(2714..>3236)
                     /locus_tag="VI413_03605"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913739.1"
                     /translation="TNQATELKLQWRPGNMAASHKIYLGTNALLPDSTLNSSQTDTTL
                     IVSNLKEGTTYYWRIDEVNNTNTKTGYLWSFTTKTSTGISNPAIKLSKIYPNPLKKGE
                     LLQLDLGTNADKFDTIGIWSVNGILLLQQPVNGMQKLNLNLEAHNLPAGVYFVRAEKT
                     GTFSSSQKLVYIL"
BASE COUNT          814 a          703 c          711 g         1008 t
ORIGIN      
        1 gttgtcgaag aaataagtaa gttggttctt caaagaatct gttgtagacc actcttccat
       61 tttagccaga aactgcggta ccgcccagcg gtattgccaa cgcgttccct gatacaggcc
      121 gttacctccc attttggtaa atgttggatt tatatacctg aattcctttt gccaggtatc
      181 ggtgaaaagg ttttcggatt gtgtgcgata ttttgccgcc tcttccggtt tccctgtaat
      241 ttcagcaatt tgagccagtg cccataaatc ggccgatgat tcaagcttct ggtccggcga
      301 gttaagcggc aattcattgg cttctttgca aagctgcgga tagcaggcgt tgaaatcaat
      361 acctttaatg cctttgcgat aggcatcgag cagcaaaata acagcatgtt ccgtgcgtac
      421 ggtgggagtg gcctcggagt cggttgacca attggctttc cctgtttgat acagcctgac
      481 gagcgactga gccatgtggc tcatggcatt cggctccagg agtgccagca ttggaaattt
      541 ggtccggtac gtatcccaaa gcgaccagga gctgtaatag gtgtcttcgc cgctctcgtt
      601 aatttgtccg ttagttgcca ggtattgtcc ctccgacgag gttacatttg ccggactcag
      661 ataaaccctg taaagcgatg tgtaaaagat ggttttatca tccaaagtcc cgccttctac
      721 gttgaacctt gaaagtttct gttcccataa tctggctgcg tctgacttaa tatgcgagaa
      781 tgtcgttttt tgcaacagtt gattttcttt gcgcgctgca gctaagctaa cagatgaaac
      841 agcaatgcga cattctactt tattggtttt gctttcgctg aatgacaact gcatgcttcg
      901 gtagacatca tttttaataa aaaatgtctg atcggttatc atgttaaagt agagtttgta
      961 ctggccacgg ccacagacat tggcacaaac gacaaagcct tccagttcat ttccggaaac
     1021 ttgtttatgt tgttcttcca cggtccgttc aaacgatgcc cccagattga atgtaagctt
     1081 tatttcttta tttttgggaa aaacatactg ctccacagct atatttcggg tggcggtaag
     1141 ttgtgcttta accccattat tgaaacaggt ttcgtaatat cccggttccg ctttttctgt
     1201 ggtttttaca atgcgcaaat cgtaatccag gtctgccggc cttatgctga agtttccacc
     1261 tgctccgctg cagcctacgc ctgacatgcg gttgacagaa atgcctgaaa ctttagccac
     1321 actataatcg tagccggcgt ggcttctcgg atcgctgtcg ggacaaacac gcaccatccc
     1381 aaatggcact gttgcacccg ggtcaacctg gccgttgtcg cctgatgttc cgataaagag
     1441 gtttactttt gaattgtttg acgctgctgc tgaaacgaag gcagaagcaa gcaagattat
     1501 aagcgcaaaa taatgcttgt caggtttcat ataagtagtt tgtgatattt aatatgattc
     1561 tccacaaaat gtcctaataa atagaattag agtattcgag acccatttct atttactttt
     1621 tcaatagccg tgaacttaca ccttcaaaag tcatcaccac cggtttgata tttcccgttg
     1681 cgtcaaactc cattttatcg atacaggtta cccttgaatt cccatctgtc tcacccaatg
     1741 ggcggcggtg ataaatgatg taccattcgt cagttccggg aacatttatt accgagtggt
     1801 gacctgctcc tgtggcaatg cgggcatcct gctgcaaaac gagtccgatg cgggtgaacg
     1861 gaccgaaagg cgaatcgcca atggcataag ccacccggta atcggggcct gtccaacctc
     1921 cttcggacca catgaagtag tatttgttgt tgcggcgaaa cataaccgga ccttctacat
     1981 agccctgcgg tgtgatttct ttgaaagtag tgccatcagc aaaaggaatg aatgctttga
     2041 agttgctttg caactttaca atattgcaat gcccccaacc cccataaatc atgtaatact
     2101 ggccatcttt atcctgaaaa acgaattggt cgataggttg cgccccgttg tgaaacttgt
     2161 ccagcaacgg cttccccaga taatctttaa acgggccttc cggtttatca gaaacggcca
     2221 ctccaattcc gccttccgaa ttattgttct ggatatcgtt ggcactgaaa aaaaggaaat
     2281 atcgcttgtc tttcctgata atggccggtg cccacatggc ttttttcgcc catttaatgt
     2341 ttgctgtgtc tacgatatgg ctgtgcttgg tccatttgac aaggtcgggc gacgaaaaag
     2401 catccataaa aacctgtttt tcgtagggtg cggagtaagt tggaaaaatc cagtattgat
     2461 tattgaggat agtgccttcc ggatcggcat accagccttt aaaaagcgga ttgcctgatt
     2521 tctgggcgaa agaaactgtt tgaaaagaaa ttacaaaaag taccagtaat agtgagagag
     2581 tttttgattt cgaattcttc atgttgtttt atgtaatggg tgaaaaaaat caaaataacc
     2641 gtaagttcac agtcccacgg ttatccattt ttaagtattt agtttgaatt gttgatttgt
     2701 tcttttcctg aaattacaaa atgtacacca gtttttgtga ggagctgaat gttccggttt
     2761 tttctgctct tacaaaataa actccggcag gcagattatg ggcttccagg ttcagattta
     2821 gtttttgcat accgtttacg ggttgttgga gaagcaatat cccatttacc gaccaaattc
     2881 cgatagtatc aaatttatca gcatttgtgc ccaggtccaa ttgaagtaat tctccttttt
     2941 ttagtggatt aggataaatt ttggatagtt ttatagccgg attacttatg ccggtacttg
     3001 ttttcgttgt aaaactccat aagtacccgg ttttagtatt ggtgttattt acttcgtcaa
     3061 ttctccaata atatgttgtt ccttctttta aattgcttac aattaaagtt gtgtctgttt
     3121 gtgagctgtt cagggtcgaa tcgggtaaaa gggcatttgt tcccaaatat attttgtgcg
     3181 aggcagccat attacccgga cgccactgca attttaattc cgttgcctgg ttggtt
//
LOCUS       DATDNM010000211         2976 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_988347, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000211 DATDNM010000000
VERSION     DATDNM010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2976
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_988347"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VI413_03610"
     CDS             complement(<1..341)
                     /locus_tag="VI413_03610"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEY6913740.1"
                     /translation="MKKTLQLLLLCIVVSSTAMAQKPTNVEIVDLTTQSFKQKVWNFD
                     KDKTFKRVGELPIILDFHATWCRPCKMLAPHLQSIQNKYKGKLVIYRIDVDQEPQLAQ
                     LFKVQAMPTVV"
     gene            complement(366..1187)
                     /locus_tag="VI413_03615"
     CDS             complement(366..1187)
                     /locus_tag="VI413_03615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913741.1"
                     /translation="MRKIVLALISLSFVFSSCNSRAAQEKDADKRLKHIEQLIAENAL
                     NAAKIEIDSIHSIYPRLVNKRKIAAAFEDTIVRRESARTLAYCDSILPLKQHEADSIQ
                     KNFRFEKDEKYQQFGNYVYKTQQTESNSNRTYLKAYVDENADLYLISNYCGGKIEHTS
                     IEVAVNDLFAHTDTLDVSNSAYHSFNDGGSHWETLTLKNEQDKGVTGFIAQNSGARIK
                     VTLHGKKPMVYYLADADKKAIAETYHLWIVKKDVAQLQKEIKKATIRIERITKGK"
     gene            complement(1231..1953)
                     /locus_tag="VI413_03620"
     CDS             complement(1231..1953)
                     /locus_tag="VI413_03620"
                     /inference="COORDINATES: protein motif:HMM:NF024957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HEY6913742.1"
                     /translation="MYKPILIISILFLSLNISAQATYDEDGNLEQQGSSIDFSKISFG
                     LKISPTVSWINVVNTDMQADGAALKLGVGGVVSYELLPDFYLVSGVNYNSYGGYVYDN
                     ESLNNTVFRNNYRVDYNEIEIPIAFKLKTKTNNKMAYFLQGGFSAGFINSSTEKRIAL
                     AQNAKPVYTDISLMTNPTRLNCLFGAGVEYSLGKKTNLFGLISYKNSLTNQANSMAYA
                     DRYNSLLQMYPGSMEFSVGIMF"
     gene            2202..>2976
                     /locus_tag="VI413_03625"
     CDS             2202..>2976
                     /locus_tag="VI413_03625"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HEY6913743.1"
                     /translation="MQKPLIQLLFAILLAFELTSCITTHQTNYLQAPKNLNHNYKDSI
                     SYEDYSLKEGDKLFIQVYSTDSKTNALFNGSGNSGMQMLAGSDAGETADLYTYSVMAN
                     GNIQFPIIGEIYVKGKTLRETKKAIEEAIRPLLKINSVDVRMIGRAFSVIGAGKSGRF
                     SFPKEKINIFQALAISGDVGLYTDRSKIKILRRTKDGTQIKTFDIRGEDIINSEFYYL
                     EPDDVIFLQPMNAQFFGVTTFWSAVSTVITTVSFVTGVYA"
BASE COUNT          909 a          557 c          498 g         1012 t
ORIGIN      
        1 aatacaactg ttggcatagc ttgtacttta aaaagttgtg ccaattgtgg ttcctgatca
       61 acgtcaattc tatagatcac cagtttaccc ttgtatttat tctgaataga ctgtaaatga
      121 ggagccaaca ttttacatgg acgacaccag gttgcatgaa aatcgagaat tatcggcaat
      181 tcgcctacgc gcttaaatgt tttgtcttta tcaaaattcc atactttttg tttaaagctt
      241 tgtgttgtaa gatcaacaat ctcaacattt gttggtttct gagccatagc tgtagagctg
      301 acaacaatac acagcagaag cagttgaagc gtttttttca tttttcttat tttttaatgg
      361 tataattatt ttcctttggt tattctttca attcttatag ttgctttttt tatttctttt
      421 tgaagttgag ctacgtcttt tttgactatc cacaaatgat aagtttctgc tatagctttt
      481 ttatcagcgt ctgccaaata ataaaccatt ggttttttcc catgcaatgt aaccttgatt
      541 cttgcacccg agttttgagc aataaaacct gtaaccccct tgtcctgttc atttttcaac
      601 gttaatgttt cccaatgtga accgccatca ttaaaactat gataagccga attactgaca
      661 tccaacgtgt ctgtatgggc aaacaaatca ttcacagcca cttcaatgga agtatgctct
      721 atttttccac cacaataatt gcttatcaga taaaggtcgg cattttcatc aacgtaagct
      781 tttaggtaag tccggtttga attgctttcg gtttgctgcg ttttataaac ataattgcca
      841 aattgctggt atttttcgtc tttttcaaac ctgaaattct tttgaattga atcagcctca
      901 tgctgtttta atggcaaaat gctgtcgcaa taagccaatg tgcgggcact ttcgcgacga
      961 acaatcgtat cttcgaacgc tgctgcaatt tttcgtttat ttaccaggcg gggataaatc
     1021 gagtgaatgc tgtcaatttc aatttttgca gcattcaatg cgttttcagc aattaattgt
     1081 tcaatatgtt tcaggcgttt atctgcatct ttttcttgtg ccgcacggga attacacgag
     1141 ctaaaaacga atgataaaga aatcaaagca agaactattt ttctcattta caattattta
     1201 aatttacaat tcaacatgtc aacataattc tcagaacata attccgacag aaaattccat
     1261 acttccggga tacatttgta ataacgaatt ataccggtca gcataagcca tactgttagc
     1321 ctggtttgtg agcgagtttt tatacgaaat cagtccgaac aagtttgttt ttttacccaa
     1381 tgaatactct acgccggcac caaacaaaca gtttaggcgg gttggatttg tcataagaga
     1441 aatatcagtg tataccggtt ttgcattttg ggcaagagct atacgttttt cagttgaact
     1501 atttatgaaa cccgcagaaa accctccttg cagaaaatat gccattttat tattcgtctt
     1561 tgtcttgagt ttaaaggcaa tcggaatctc tatttcattg taatccaccc gatagttatt
     1621 tctgaaaaca gtattgttca acgattcatt gtcataaaca taaccaccgt acgaattgta
     1681 attcactcct gaaacaagat aaaaatcagg caagagttca taacttacca cccctcccac
     1741 tccaagtttc aatgcagctc catcggcttg catatcggta ttgacaacat taatccagga
     1801 gactgtagga ctaattttca atccaaatga tatttttgag aagtctattg aacttccttg
     1861 ttgttctaaa ttcccatctt cgtcataagt tgcctgagct gaaatattta agctgaggaa
     1921 aagtatcgaa ataatcaata ttggtttata catagccatt ctgttgttta attgtttgca
     1981 aatttaattg ttttttgtca gaaaaaagaa tttatcattg tgagtaaaat tgaaccgcta
     2041 gaaataaatc tttattcact tatcaataat aataccagtt acttttttaa attaaaacta
     2101 ttaacgccaa aaatctgttc ttagtttgta aattcatttt cagctatagt tattttacat
     2161 attttgacta tctttgctac aaatttccaa aaaacaacgt tatgcaaaaa ccgttaattc
     2221 aacttttatt tgctattctg ttagcttttg agttaacttc gtgcattacg acacaccaaa
     2281 caaattacct tcaagcgcct aaaaacctga atcacaacta caaagacagt atttcatacg
     2341 aagattacag tttaaaagaa ggtgacaaat tatttataca ggtttattcc actgatagta
     2401 aaacaaatgc attgtttaac ggttccggaa attccggtat gcaaatgtta gctggctctg
     2461 atgccggcga aacagctgat ttgtacacct actcagttat ggcaaatggg aacatacagt
     2521 ttccgattat cggtgaaatt tacgtaaaag gcaaaacctt acgggagacg aaaaaagcta
     2581 tagaagaagc catcaggcca ctgttgaaaa ttaattcagt agatgttcgt atgatcggta
     2641 gggcatttag cgtgattggt gccggcaaat ccgggcgatt ttcgttccct aaagaaaaaa
     2701 tcaatatatt tcaggcattg gccatttctg gcgatgtagg cttatacaca gacagaagta
     2761 aaataaaaat tcttcgtcgg accaaggatg ggactcagat taaaaccttt gatatacgcg
     2821 gcgaggatat tataaattct gaattttatt atcttgaacc cgatgatgtc attttcttgc
     2881 aacctatgaa tgctcaattt tttggagtaa caactttctg gagtgctgtt tcaacggtaa
     2941 ttactacagt ctcattcgtt accggcgttt atgcaa
//
LOCUS       DATDNM010000212         2272 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1094083, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000212 DATDNM010000000
VERSION     DATDNM010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2272
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1094083"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..485
                     /locus_tag="VI413_03630"
     CDS             <1..485
                     /locus_tag="VI413_03630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEY6913744.1"
                     /translation="DSLVSDSEYKFGVDAQEMLVAKFDSLTFPDTFLKRWVLSSNENL
                     TPETLEADYSKMIADLKWHLIKDKLAKASDIKVEAADVEEYAKKVAKAQFAQYGMIGM
                     DDEIVANYAKDMMKKEDTLKNMVDKVAEEKVFAIIKESVKLDTKEVSIEEFNKMFEAK
                     "
     gene            633..1310
                     /gene="clpP"
                     /locus_tag="VI413_03635"
     CDS             633..1310
                     /gene="clpP"
                     /locus_tag="VI413_03635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018074905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEY6913745.1"
                     /translation="MNNNDFRNYATKHLGMNGLALDKYADITSNYISPSILEERQLNV
                     TQMDVFSRLMMDRIIFLGTQVDDYTANVIQAQLLYLDSADPGKDISIYLNTPGGSVYA
                     GLGIYDTMQFISSDVATICTGMAASMGAVLLVAGAHGKRSALKHSRVMIHQPMGGAQG
                     QASDIEITAREIQKLKKELYNIIADHSNNPFERIEKDSDRDYWMTSEEALEYGMIDKV
                     LFNEKKK"
     gene            1440..>2272
                     /gene="clpX"
                     /locus_tag="VI413_03640"
     CDS             1440..>2272
                     /gene="clpX"
                     /locus_tag="VI413_03640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEY6913746.1"
                     /translation="MAKNTSKHCSFCGRPESQVDFFIMGQDGAHICNECAVQAAEIVK
                     ENSSKKSNLQGIQKDQVPKPVEIKEYLDQYVIGQDEAKKYLSVAVYNHYKRLMQETTS
                     DDVEIEKSNIIMVGYTGTGKTLLAKTIAKKLHVPFTIVDATVLTEAGYVGEDIESILT
                     RLLQVADYDVKAAERGIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGAVVN
                     VPPQGGRKHPDQKMIAVNTQNILFVCGGAFDGIEKKIASRLNTRVVGYNAAKEHEAVD
                     K"
BASE COUNT          748 a          477 c          514 g          533 t
ORIGIN      
        1 aggacagcct tgtatctgac agcgaatata aattcggcgt tgatgcacag gaaatgcttg
       61 ttgctaaatt tgacagcctg actttccctg atacattcct gaaacgctgg gtattgtcga
      121 gcaacgaaaa cctgactcct gaaacactgg aagcagatta ttcaaaaatg attgccgacc
      181 tgaaatggca tttgatcaaa gacaaactgg ctaaagcaag cgacatcaaa gtggaagctg
      241 ccgatgttga agaatacgct aagaaagtag ccaaagctca gtttgcccaa tacggaatga
      301 ttggcatgga cgatgaaatt gttgccaact acgctaaaga catgatgaaa aaagaagaca
      361 ctttgaaaaa catggtcgat aaggtagctg aagaaaaagt attcgccatc ataaaagaat
      421 cagtgaaact ggacacgaaa gaagtttcaa tcgaagaatt caacaaaatg tttgaagcga
      481 aataatcgtt ttttcactca ttttgccgaa aaggctttta actgctaaaa aatcaaacaa
      541 aatagttata tctttgtttc ttttttggaa aaggttaaag gcctttttcg atttcagaaa
      601 caacggaaca aactttttaa acatataagg acatgaacaa taacgatttt cgcaattacg
      661 ccaccaaaca ccttggtatg aacgggttgg cactggacaa atatgccgac ataacaagca
      721 attatatttc tccttctatt ttggaagaac gtcagctaaa cgtaacccaa atggatgttt
      781 tctcccgcct tatgatggat cgtatcattt tccttggaac acaggtagat gattacaccg
      841 ccaatgttat tcaggcacag ttgctttacc tggactctgc agatcccgga aaagatatct
      901 ctatctacct gaacactccg ggcggatcgg tttatgccgg attgggaatt tatgacacca
      961 tgcagtttat cagctccgat gtggcaacta tctgcaccgg aatggcagca tcaatgggag
     1021 ccgtattgtt ggtggcaggt gcacatggca aacgttcggc cctgaaacat tcccgcgtaa
     1081 tgattcacca accaatgggt ggcgcacagg gacaggcttc ggatattgaa attactgccc
     1141 gcgaaatcca aaaactcaaa aaagaacttt acaatattat tgccgaccac tcaaacaatc
     1201 cattcgaacg cattgaaaaa gattcggacc gcgactactg gatgacttct gaggaagcgt
     1261 tggaatacgg tatgattgac aaggttttat tcaacgagaa aaagaaataa caagagataa
     1321 gcaggttgcc ggcggtttat agtcaatagt ttataaacca cactatacga accggcacta
     1381 aacgaattaa ataagcccgg tactggcaaa caacgtctgc cagccgggga ataaaaaaca
     1441 tggctaaaaa tacttccaaa cattgcagct tctgtgggcg ccccgaatca caggttgatt
     1501 ttttcatcat ggggcaggat ggcgcgcaca tttgtaacga gtgcgccgta caggcagctg
     1561 aaattgtaaa agagaactct tcgaaaaaat cgaacctgca aggaatacag aaagaccagg
     1621 ttcctaaacc ggttgagata aaagaatacc tggaccaata cgttattggt caggacgaag
     1681 caaaaaagta tctttctgta gctgtttaca atcactacaa acgattgatg caggaaacca
     1741 catcggacga tgttgagatt gagaaatcaa atattatcat ggttggctac accggaacgg
     1801 gaaaaaccct gctggctaaa accattgcca aaaagctgca tgtaccgttt accattgtgg
     1861 atgcaaccgt actgacagaa gccggatacg tgggtgaaga tattgaaagc atcctgaccc
     1921 gcctgttgca ggtggccgat tacgatgtaa aagctgcgga acgaggcatt gttttcatcg
     1981 acgagataga taaaattgcc cgtaaaggcg acaacccgag catcacccgt gacgtaagcg
     2041 gcgaaggcgt tcagcaagga ctgctgaaac tgctcgaagg agcggttgta aatgttccgc
     2101 cacagggagg acgcaagcac ccggaccaga aaatgattgc cgtaaacaca cagaatattc
     2161 tgtttgtatg cggtggtgct ttcgacggca ttgaaaagaa gattgcttcg cgcctgaaca
     2221 cccgtgtagt tggctacaac gctgccaaag agcacgaagc ggtagacaaa ca
//
LOCUS       DATDNM010000213         2577 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1416130, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000213 DATDNM010000000
VERSION     DATDNM010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1416130"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..465)
                     /locus_tag="VI413_03645"
     CDS             complement(<1..465)
                     /locus_tag="VI413_03645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6913747.1"
                     /translation="MTNITDMENEQTVSTDILFESRIDLGDLQQNMEAVRSELKKVIV
                     GQDRMIDHLLVAMLANGHVLLEGVPGIAKTIAVKLLAKTMDVKFSRIQFTPDLMPADI
                     LGTSVFDMKKTEFEFRPGPIFANLILIDEVNRAPAKTQAALFEVMDERQITID"
     gene            complement(499..1704)
                     /locus_tag="VI413_03650"
     CDS             complement(499..1704)
                     /locus_tag="VI413_03650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913748.1"
                     /translation="MDKTLKIYLGALVGIIILVVFIDMSRTKPVDWSPTYSLDTKNPL
                     DLYVFNQEVEKIIPKERLKRITVTPFEYFRESNGAANYMIISQNVYDQIDSLLLNEVS
                     KGSNLWISGENFIKTFTDTLQLQYTDVDLNSSLKKIDSIKLTLSMENWHDKYFHLHPV
                     LNAFSFVKLNPATTTILGKTEMPDGVVFPNFVRVKFGKGTIFMHNQPSVFTNVELLAP
                     NSSADYVAHILSYIPPDKPIVWFVKNQTFNKGEPVNESALSVIFRYPALRMTWLLFIY
                     GMLLYLLFNAKRRQRVVPVVKPLKNTTVEFVQTIGNLYFQEGSTANIFDKKIIYFLDR
                     VRHRYYLDTNKLDDNFAEKLHAKSGKDKDLINAILICIRDFYKLRTAIPTDLIKLNNL
                     IEEFWDEKR"
     gene            complement(1697..>2577)
                     /locus_tag="VI413_03655"
     CDS             complement(1697..>2577)
                     /locus_tag="VI413_03655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913749.1"
                     /translation="AKQLSITRLFPILIILAKMRNKAFVLFFLCWTVQTMSFAQPDSV
                     KADSKTLIETILANNQGDRIAQMEKLFKSVPSDTTNQKVVSFADDFREKYVNDKDFNY
                     DQEEGNKTFLARFFERLGNLLKKLFGFGSLGKVSDITTLVFKIICGLVILVVIYFIIR
                     LFMNHKGKWFFQKKNEAISIDINNSEQLIQSADFEQLISEVEKQGNTRQSIRLYYLWL
                     LKDLKEKELIIWLPEKTNADYMAELKNEALRKQFSYLSYLYNYIWYGEFSITDADYLG
                     AKKAFLIYLRKDGQNG"
BASE COUNT          751 a          551 c          461 g          814 t
ORIGIN      
        1 gtcgattgtt atctgacgtt cgtccattac ttcaaacagg gcagcctgcg ttttggccgg
       61 ggcacggttt acctcatcta ttaatatcag attggcaaaa ataggcccgg gacgaaactc
      121 aaactctgtc tttttcatat cgaaaactga agttccgagg atatcggcag gcatcaaatc
      181 aggtgtgaac tgaatgcggc tgaatttcac atccatggtc tttgccagta gtttcacggc
      241 aatggttttt gctattccgg gcactccttc cagcaacaca tgcccgttgg ccaacatggc
      301 taccagcaag tgatcgatca ttctgtcctg ccctacaatc acttttttta attcactgcg
      361 gacagcttcc atgttctgtt gcaagtcacc taaatcaatg cgcgattcga aaagaatatc
      421 ggttgatact gtttgttcgt tttccatatc tgttatattt gtcatatttc tttggttcta
      481 aaattagtgt tcaatatatt aacgtttctc atcccagaat tcttcaatca gattgttgag
      541 tttgatcaaa tctgtgggaa tagccgttct cagtttataa aaatccctga tacaaattag
      601 tatggcatta atcaggtctt tgtcttttcc ggactttgca tgcaatttct ccgcgaagtt
      661 gtcatccagt ttgtttgtat ccaaataata cctgtgcctc acccgatcca ggaaataaat
      721 aatcttttta tcgaatatat tggccgtact tccttcttga aaatacaggt taccaatagt
      781 ttgcacaaat tcaacagtgg tatttttcag tggctttaca accggtacta cccgttgccg
      841 tcgcttggca ttaaataaca ggtacagcaa cattccgtat ataaataata accaggtcat
      901 ccgcagggca ggatacctga aaatcaccga caaagccgac tcattaacgg gttcaccttt
      961 attaaatgtc tggtttttca caaaccacac tataggttta tccggtggaa tatatgaaag
     1021 tatatgcgcc acataatcgg cagaactgtt tggagcaagt aattcaacgt tggtaaaaac
     1081 agaaggttgg ttgtgcataa atattgtgcc tttaccaaac ttcacccgaa caaaattcgg
     1141 aaaaacaacc ccatcgggca tttcagtttt tcccagaatt gttgtagtag ccggattcag
     1201 ttttacaaac gaaaatgcat tcaaaaccgg atgcaaatga aaatacttat catgccagtt
     1261 ctccattgac agggtcagct ttatcgagtc aatttttttc agactggagt tcaggtcaac
     1321 atcggtatat tgcagttgca gcgtatcggt aaaagtcttg ataaaattct caccacttat
     1381 ccaaaggttg cttcctttac tgacttcatt caggagaaga gaatcaatct ggtcataaac
     1441 gttctgactt attatcatgt aattagccgc tccattactt tcacggaaat attcaaaggg
     1501 agttaccgta atacgcttta gcctttcttt cgggataatc ttttctacct cttgattaaa
     1561 aacgtacaaa tcaagcggat ttttagtatc caacgaatag gtcggcgacc agtctactgg
     1621 ctttgttctc gacatatcaa taaagacaac gagaataatt attcccacga gtgctccaag
     1681 gtatattttc agcgttttat ccattttgcc catcctttct cagataaatc aaaaatgctt
     1741 ttttggcacc gagataatcg gcatctgtaa tagaaaattc gccgtaccag atatagttat
     1801 acaggtaaga aagatacgaa aattgtttgc gcaaagcctc atttttcagt tcggccatgt
     1861 aatcggcatt ggttttttcg ggaagccaga taataagttc cttttcttta aggtctttca
     1921 gcaaccaaag gtaatacaac cggatacttt gacgggtatt gccctgtttt tcaacttcgg
     1981 agataagttg ctcaaaatcg gccgactgaa tcaattgttc cgaattatta atgtctatcg
     2041 aaatagcttc attctttttc tgaaaaaacc acttgccttt atggttcata aacagcctga
     2101 ttataaaata aattacaacc agtataacca acccgcatat tattttgaaa actaaagtgg
     2161 ttatatccga aactttacca agtgagccga agccgaacaa tttcttcaga aggttgccta
     2221 atctttcaaa gaacctcgct aaaaaggtct tgttgccttc ctcctgatca taattaaaat
     2281 ccttatcatt cacatatttc tccctgaaat cgtccgcaaa tgaaaccact ttttgatttg
     2341 tcgtatcact cggcaccgat ttaaatagtt tttccatttg ggcaattcta tcgccctggt
     2401 tattcgcaag aatcgtttct attaacgttt ttgaatcagc cttaacggaa tcgggctgag
     2461 caaacgacat ggtttgcaca gtccagcaca gaaaaaaaag aacaaaggct ttattcctca
     2521 tctttgccaa tattatcaat atcggaaaaa gtctggtaat gctcagttgc ttcgcgg
//
LOCUS       DATDNM010000214         2193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1949886, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000214 DATDNM010000000
VERSION     DATDNM010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1949886"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VI413_03660"
     CDS             <1..236
                     /locus_tag="VI413_03660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913750.1"
                     /translation="TNAYQLRQDGVPLLGFTWYSLIDQVDWDTALREDNGNVNSLGLY
                     DMDRKIRPVGKAYKKIIEQWSPVLDKEPFGLQL"
     gene            329..793
                     /locus_tag="VI413_03665"
     CDS             329..793
                     /locus_tag="VI413_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY6913751.1"
                     /translation="MDSNSSQAHARMMIRKPVAEVFNAFIDPAFTRNFWFTRSDGKLE
                     LNKTITWEWEMYNVSALVWVKEIKQNSKIVIEWGEPATNVEFQFQSISSSATYVQIIE
                     SGYHETGDKLVKHIIDSTGGFTTVLDGLKAYLEHGINLNLIADKFPKEIMQR"
     gene            complement(840..1928)
                     /locus_tag="VI413_03670"
     CDS             complement(840..1928)
                     /locus_tag="VI413_03670"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY6913752.1"
                     /translation="MAKANSFGQNDQQFSFKIDGTINADTGTVSIYFITDYVPNSVND
                     LVGKVKNGKFTISGYLPEPQSVFIVLNDDYKSEDFIIEKGLQTISINTDSTEKVPVVS
                     NSTMINEYPLYVAFFKQYNIKRDISDQKYNSLYKLHNYQLPEAIKSSQSKENAILYKE
                     HDQLLLAYSEKNPNSEIAFWKLIKLMGWGYEPIFDSIYNSFSDKLKNGYAGRVLNKKL
                     QEGRVLTIGKQFPLLQCVNRNNEKFSSDIFTSKKLILVDFWYSRCAPCRAQFGSLKNL
                     YNQFSSKGFEIVGISKDKATDKKIWEETIVNDQLIWQQYWDKDGKDVHKLSITSYPTN
                     FLVDHTGKIIAKNISLGELEQVLSRSLK"
BASE COUNT          698 a          397 c          369 g          729 t
ORIGIN      
        1 ggaccaatgc ataccagcta cgacaggacg gggtcccact gcttggattc acctggtata
       61 gcctgattga tcaggtggat tgggatactg ccctgagaga agataacggc aatgtgaact
      121 cactgggact gtatgatatg gaccgaaaga taagacctgt cggtaaggcc tataaaaaga
      181 tcattgaaca gtggtctcct gttttggata aagaaccttt tggattacag ctttaatggc
      241 aaacctgttc caaaaatctg catttatttg taatttagtt tgaataaata tcctgaaaat
      301 tgtattttta atactattat ttaaaactat ggatagtaat tcaagtcaag cacatgcccg
      361 gatgatgata agaaaaccgg tagctgaagt tttcaatgca tttatcgatc ctgcctttac
      421 ccgtaatttc tggtttacaa gaagtgacgg caaactggaa ctaaacaaaa ccatcacctg
      481 ggaatgggaa atgtacaatg tttctgcctt ggtatgggta aaagaaataa aacagaacag
      541 caaaattgtt attgaatggg gtgaacctgc caccaatgtt gaatttcaat ttcaaagtat
      601 atcaagcagt gcaacttacg ttcagattat cgaatcagga taccatgaaa ctggcgataa
      661 gctggtaaag catatcatag actccacagg aggctttaca accgtactgg atggactaaa
      721 agcctacctg gaacatggca tcaatttaaa tttgatagcc gataagtttc caaaagaaat
      781 catgcaacga tgaaactaat agtctcactt taagtgagac tatcagtata ctttattact
      841 tattttaaac ttctgcttaa gacttgctcc aattcaccca aagaaatatt tttagcaatt
      901 atttttcctg tatgatcaac aaggaaatta gtaggatacg aagtaatgga taatttatgc
      961 acatctttgc catctttatc ccaatattgt tgccaaataa gctgatcgtt gacaatcgtt
     1021 tcttcccaaa tttttttgtc tgttgcttta tctttggata taccaactat ttcaaatcct
     1081 ttactgctaa attgattgta taaatttttc aagctaccaa attgagccct gcatggtgca
     1141 catctactat accaaaaatc aaccaatatc aattttttac tggtaaatat atctgatgaa
     1201 aacttttcat tgttcctatt gacgcattgc aataatggaa attgcttgcc tatggtaagt
     1261 actctacctt cttgtagttt cttattcaat accctgcctg catatccatt tttcagtttg
     1321 tcagaaaagg aattgtaaat tgaatcaaat atgggttcat acccccaacc cattaattta
     1381 ataagcttcc agaatgcgat ttctgagttt ggattctttt cactataggc cagcagtaat
     1441 tgatcatgct ctttatatag aatagcattt tcttttgact gactagattt aattgcttca
     1501 ggcaattgat aattatggag cttatacaaa ctattatatt tttggtcact tatgtctctc
     1561 ttaatattgt attgtttaaa aaaggcaacg taaagaggat attcatttat cattgtgcta
     1621 ttggacacaa caggcacttt ttctgtcgaa tctgtgttta ttgaaatagt ttgtaatcct
     1681 ttttcaataa taaaatcttc tgacttatag tcatcattaa gaacaataaa tacagattga
     1741 ggctctggca ggtatcctga gatggtgaat tttccatttt tcaccttccc gactaaatcg
     1801 ttgacactat ttggtacata atcagtaata aaatagatag atactgttcc cgtatcagca
     1861 ttgatggtgc cgtctatttt aaaggaaaat tgctgatcgt tttgcccaaa agaattagct
     1921 tttgccaaaa acgtgattat aaatacaacg caccattttt tcatatttcc agcatttagc
     1981 ttaatcgaaa aatatcattt gagaataaca cgggtaaata ggtaatatag ttatactgat
     2041 agtctcacta aaagtgagac tatcagtata aacttaatgt atctcaatat cgtattccat
     2101 ccttgccatc acaccttttt gcgacatcac attgcgcagc tgctgatagt atttgtaatt
     2161 atcacccagc tcacttttca ggatgcttgc ctt
//
LOCUS       DATDNM010000215         2968 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_27442, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000215 DATDNM010000000
VERSION     DATDNM010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2968
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27442"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1870)
                     /gene="htpG"
                     /locus_tag="VI413_03675"
     CDS             complement(<1..1870)
                     /gene="htpG"
                     /locus_tag="VI413_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005643211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEY6913753.1"
                     /translation="MAKGNIGVTSDNIFPVIKKFLYSDHEIFLRELVSNAVDATQKLK
                     TLASVGEYKGELGDLTVRVAVDKNKGTLTISDRGIGMTADEIEKYINQIAFSGAEEFL
                     EKYKNDAQAIIGHFGLGFYSSFMVSKQVEIFTQSHKEDATAQHWACDGSPEYNLEDTI
                     KAERGTDIVLHIDDDNKDFLEESKIQELLTKYCKFLPIEIAFGKKKEWKDGKNVETDQ
                     DNIINNTNPAWTRKPADLKDEDYTAFYHELNPMAEDPLFHIHLNVDYPFNLTGILYFP
                     KIKNNIDMQRNKIQLYCNQVYVTDHVENIVPEYLTLLHGVIDSPDIPLNVSRSYLQSD
                     GNVKKISSHITKKVADRLNEIFKADRTAFEEKWDNLKLFIQYGMLSDEKFYERGEKFA
                     LLKNIDGKYFTFEEYKALVGENQKDKNGEVIYLYANNADEQYSHIQHAKDKGYDVLIM
                     DGQLDVHVVSQLEQKFEKTRFVRVDSDVIDKIIQKDDAVKVTLTDDQRDALVTVFDSQ
                     IPALEKTNFIVTFEQLSATANPVFVTQNEFMRRMKEMSALQGGMMSFYGEMPDSYNLV
                     VNTAHPVIEKLLKDEETACSAEVAQVATEIALAESKKATLKENQKGKKDEEIPTAEK"
     gene            complement(2181..2684)
                     /locus_tag="VI413_03680"
     CDS             complement(2181..2684)
                     /locus_tag="VI413_03680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913754.1"
                     /translation="MALLVCLSVFSQTTKDTIDSTQATKMAQLQDTIQYRKAGAGYNF
                     TLNNETLTLDKLENVLQNNPASFDYFKKAKSTKGIISVLGYAGGALIGYPLGTMLGGG
                     RPNWTLAAVGCGLLAIGIPIASNADKNILRAVQIYNQEPPLTRKDNNYEIKLGMNQNG
                     LALAVSF"
BASE COUNT          721 a          572 c          645 g         1030 t
ORIGIN      
        1 ctttttctgc agttggaatt tcttcgtctt ttttgccttt ctgattttct ttcaacgttg
       61 cttttttgct ttcggcaagg gcaatttctg ttgccacttg agctacttca gcgctacaag
      121 cagtttcttc atctttcagt aatttttcaa taaccggatg ggcagtgttt accactaaat
      181 tgtagctgtc gggcatttcg ccataaaaac tcatcatgcc gccttgcaga gctgacattt
      241 ctttcatacg gcgcataaac tcgttttgtg taacgaaaac aggattggcg gtagccgaaa
      301 gttgctcaaa cgtaacaatg aaattggttt tttccaatgc aggaatttgc gaatcgaaaa
      361 cagttacaag cgcatcgcgt tggtcatcgg tcagagtcac ttttacagca tcgtctttct
      421 gaataatttt gtctattacg tcgctgtcta cacgtacgaa acgtgttttt tcgaattttt
      481 gttccaattg gctcactacg tgaacgtcca gttgtccgtc cataatcagc acatcgtagc
      541 ctttgtcttt ggcatgttga atgtggctgt attgttcgtc tgcattgttg gcatacaggt
      601 aaataacttc gccgtttttg tctttttggt tttcgccaac caatgctttg tattcttcga
      661 aagtaaagta tttgccatca atgtttttca gcagggcaaa tttttcgcca cgttcgtaga
      721 atttctcgtc gctgagcatt ccgtattgga tgaagagttt caggttatcc catttttctt
      781 caaatgcggt acgatcggct ttgaaaattt cgttcaatct gtctgctact tttttggtaa
      841 tgtggctcga aatctttttt acattgccat cgctttgaag gtagctgcgc gatacgttta
      901 gcggaatgtc cggcgagtca atcacaccat gtaacaaagt caggtattca ggaacgatat
      961 tttcaacatg gtcggtaaca taaacctggt tgcaatacag ctggattttg ttgcgctgca
     1021 tgtcgatgtt gttcttgatt ttagggaagt aaagaatacc ggtcaggttg aacggataat
     1081 caacattgag atggatgtgg aacaatggat cttcggccat tgggttcagc tcgtggtaga
     1141 aagcggtgta atcttcgtcc ttcagatcgg caggtttgcg tgtccatgct gggttggtgt
     1201 tgttgataat gttgtcctgg tcggtttcca cgtttttgcc gtctttccat tcttttttct
     1261 tgccaaaagc aatttctatc ggaaggaatt tacagtattt ggtgagtaat tcctgaattt
     1321 tggattcttc gaggaaatct ttgttgtcgt cgtcgatatg aagcacgata tctgttccgc
     1381 gttcggcttt gatggtgtct tccaggttat attcaggact tccatcgcag gcccaatgct
     1441 gggcggtagc atcttctttg tgcgattgcg tgaatatttc cacctgtttc gaaaccatga
     1501 acgacgaata aaaaccaagt ccgaaatgtc cgataatggc ttgcgcgtcg tttttgtatt
     1561 tttccagaaa ctcttcagct cccgaaaatg caatctggtt gatgtatttt tcaatttcgt
     1621 cggccgtcat accaattccg cggtcggaaa tagtgagtgt acctttgttt ttatcaactg
     1681 ccacacgcac ggtgaggtcg cccagttcgc ctttgtattc gccaaccgaa gcaagcgttt
     1741 tcagcttttg agtggcatcc actgcgttcg acactaattc acgcaaaaaa atctcgtgat
     1801 cgctgtacaa aaatttcttg ataacgggga aaatattatc gctcgtaacc ccgatgtttc
     1861 cttttgccat tgttatttta gtttattagt ttgggaagtc ggaatttcga ttccgaccat
     1921 tgtttaaatt ataattttat aattggtggt atggtttaag gaagcattcc accgattcgg
     1981 cgttttgcca gtcaaaaaaa atgccagcag ggtttggggt gacagaatgg cagaaaataa
     2041 ttcgtaattt acaatgcata attcataatt cataatgtgg cggaactgat agaaggagct
     2101 tcggaaagta taaaaaatta acccggctga acttcgttgg agaggtttag ccgggttgaa
     2161 ggtaagtttc ggtttatctt tcagaagctg acagctagtg ccagtccgtt ttgattcatt
     2221 ccgagcttta tttcataatt attatccttt cgggtaagtg gtggttcctg attgtaaatt
     2281 tgtacggctc ttaatatgtt tttgtcggca ttgcttgcta tgggtattcc tattgccagc
     2341 agtccacagc ctacagcggc caaagtccag tttggtctgc cgcctcccag cattgttcca
     2401 agaggataac caatcagcgc gccgcctgca taccccagga ctgatataat tcctttggtg
     2461 cttttggctt ttttaaagta gtcgaacgat gcaggattgt tttgtaatac gttttcaagt
     2521 ttgtcaagcg tcaatgtctc attgtttaaa gtgaaattgt agcctgcacc tgcctttcgg
     2581 tattggattg tgtcttgtag ttgcgccatt tttgtcgcct gagttgagtc gatagtgtct
     2641 ttagttgttt gtgagaaaac cgacaggcat actaataatg ccatacaaag aatgattgaa
     2701 tgtttgatca tgatttttaa gtagtgagta gattttagtt catattaaag cattacaaat
     2761 ataggaaaag aattctaatg attaacaaag taatggatgt tttttttaaa ttaaaattta
     2821 aaagagtgat gctggcgttg tgtaagcctg ccagccagcc tgtacttgtc cgtggttttc
     2881 aatgattttt acatttattt tcaatttcac acaatttttt tcaaccgtat tagttttact
     2941 taatagcagc tgctgtattc gaaacata
//
LOCUS       DATDNM010000216         3440 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1203061, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000216 DATDNM010000000
VERSION     DATDNM010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3440
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1203061"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..484
                     /locus_tag="VI413_03685"
     CDS             92..484
                     /locus_tag="VI413_03685"
                     /inference="COORDINATES: protein motif:HMM:NF024759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HEY6913755.1"
                     /translation="MIDEKYRYSKLTETIIGCAMEVHKILGNGFQEVIYQRALEMELT
                     LQGLNFSREHEMPIYYKNKHIGTRRVDFLVENIISVEIKAVIQLEDVHLAQAINYLEA
                     YNLEVGLLINMGARSLQFKRLTNSKFKP"
     gene            548..1681
                     /gene="nspC"
                     /locus_tag="VI413_03690"
     CDS             548..1681
                     /gene="nspC"
                     /locus_tag="VI413_03690"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019539531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0008216 - spermidine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEY6913756.1"
                     /translation="MMNYQNIPSPCYVLDEVAFRNNLELIKSVKDRAGVEIILAFKAF
                     AMWSTFPIVREYIPYSTASSLAEARLAYEEMGSKAHTYGPAYTDREFPEIMRCSSHIT
                     FNSLQQLDRFYPQTQFENISCGLRINPEFSDVETDLYNPCAPGSRLGVVAELLGNKLP
                     EGVEGLHFHTLCESTSFDLERTLAVVEEKFGKFFSQIKWLNMGGGHLMTKEGYDTEHL
                     IALLKGFQAKYPHLQLILEPGSAFAWRTGVLVSSVVDIVENKGIKTAMLDVSFACHMP
                     DCLEMPYKPAIVGATDFIQGKPTYRMGGNSCLSGDFYGDWSFDNELKTGDRIVFEDMI
                     HYTMVKTTMFNGVSHPSFGIWTKENEFKLIREFGYEDYKGRMS"
     gene            complement(1732..2649)
                     /locus_tag="VI413_03695"
     CDS             complement(1732..2649)
                     /locus_tag="VI413_03695"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HEY6913757.1"
                     /translation="MAKLNKLKYYGWSLGDRYDGWRVRKVDALFSVVPFVLSKRTASE
                     VFFEVKVPIDIIEEFIRSHKEEIPNLSIMQVVMASLVRLFSQRPYLNRFIIFNKIFAR
                     NHLCFSIAIKRSMSDQGEETVIKTYYLPTDTLLDVVQKTTSELEANQQVGQTNSADGI
                     SKLMGFFPDFLVRTIVFLVKQLDNVGLMPKFFFEASPFHTSLFLSNIGSIGIESIYHH
                     LYEFGTCSVFATMGKKSRENVVEKDGSTKPEKTILLKFVLDERICDGFYFASSMRMFE
                     KILWDPAALLLPPEQVIVDEGVGKKRRDL"
     gene            complement(2762..>3440)
                     /locus_tag="VI413_03700"
     CDS             complement(2762..>3440)
                     /locus_tag="VI413_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RecQ family zinc-binding domain-containing
                     protein"
                     /protein_id="HEY6913758.1"
                     /translation="LTDEQDSSSRVLFTVGKDDLYKLKHNPEQERLIHILLRSYTGLF
                     TDLASISEDILAKRLEWTREQVYDQLVMLAKEHVVQFIPRKKTPFLTFTREREATSRI
                     VLTKETYEDRRDRYISRVKSVLDYAQEENNCRSQVLLSYFGEKETTPCGKCDICLKKK
                     ETQVSTEDFEAIQQHIQQILATDELTLNALVKKVPYKEPKVLQVVRFMIDNEQIVENE
                     LMKLSLK"
BASE COUNT         1039 a          720 c          677 g         1004 t
ORIGIN      
        1 ctgaactatg atttgaatga ttaaatgatt gttgtgattt ttttgattgc aacagtcatt
       61 tttcatatag aaccaataaa agaagtcaac tatgattgat gaaaagtaca gatattcaaa
      121 actcactgaa acaattatcg gttgtgctat ggaggtacat aaaattcttg gcaatggctt
      181 ccaggaagta atttaccagc gtgcactcga aatggaattg actttgcaag gactcaattt
      241 tagtcgagaa catgagatgc caatttatta taagaataaa catattggta ccagacgcgt
      301 tgactttttg gtagaaaaca tcatttcagt tgaaattaaa gcagtaattc aactggaaga
      361 tgtacatttg gcacaggcca ttaattatct ggaagcttat aatttggaag ttgggttatt
      421 gataaatatg ggcgcaagaa gccttcaatt taagcggctc accaattcaa agttcaaacc
      481 ataaaatatc aaatacctaa atcaatcaga ggaatcattt aatcaccaaa atcatagttc
      541 agaagacatt atgaattacc aaaatatacc ttctccttgt tacgtcctcg acgaagttgc
      601 atttcgcaac aatctggaat taatcaaatc ggtaaaagat cgcgcaggag tggaaattat
      661 tctagcattc aaggcgtttg ccatgtggag cactttcccc attgtgcgtg aatatattcc
      721 ctattctacc gccagttcat tggccgaagc acgattggct tacgaagaaa tgggaagcaa
      781 ggcacatact tacggaccgg catataccga ccgtgaattc cccgaaataa tgcgctgcag
      841 cagtcatatt acgttcaact ccctacaaca gcttgaccgt ttttacccgc aaacacagtt
      901 cgaaaacatc tcttgcggat tgcgcattaa tcctgaattt tctgacgttg aaaccgacct
      961 ttacaaccct tgtgctcccg gttcacgcct gggtgtggtg gccgaattat taggcaacaa
     1021 attgcccgaa ggagtggaag gcttgcattt ccatacactt tgcgaatcca catctttcga
     1081 tctggaaaga acattggcgg tggttgaaga gaaatttgga aagttcttct ctcaaatcaa
     1141 atggctgaac atgggaggcg gacatttaat gaccaaagaa ggttacgaca cagaacattt
     1201 gattgcatta ctaaaaggtt ttcaggcaaa atatccgcat ttgcaattga ttctcgaacc
     1261 gggaagtgcc tttgcatggc gaaccggcgt tttagtttcg agtgtggttg atattgtgga
     1321 aaacaaagga attaaaaccg ccatgctcga tgtttcattt gcctgccaca tgcccgattg
     1381 cctcgaaatg ccttacaaac cagccattgt tggtgccact gattttattc aaggcaaacc
     1441 gacttaccgc atgggcggaa acagttgtct ttccggtgat ttctatggtg attggtcgtt
     1501 cgacaacgaa ctaaaaacag gcgatcgtat cgttttcgaa gacatgattc attacactat
     1561 ggtgaaaaca accatgttca atggtgtttc gcacccaagc tttggaatct ggacaaaaga
     1621 aaatgaattt aaactcatcc gtgagtttgg atatgaagat tacaaaggaa gaatgtcata
     1681 accggtgcta taaaacactg aaaagcctcc ttgttccggg aggctttttt attataaatc
     1741 tcttctcttt tttcccactc cttcgtcaac aattacttgc tccggcggaa gcaataaggc
     1801 tgccgggtcc cataagattt tctcaaacat gcgcatggac gatgcgaaat aaaacccatc
     1861 acaaatacgt tcatcgagca caaatttgag caatatcgtt ttttccggct tcgtagaacc
     1921 atctttttcc acaacatttt cccgtgattt tttccccata gtggcaaaca cgctgcaggt
     1981 accaaattcg tacaaatggt gataaatgga ttcaatgcct atggaaccga tattggacag
     2041 aaaaagactt gtgtgaaaag ggctggcctc gaagaaaaat tttggcatta accccacatt
     2101 atccaactgt tttactaaaa agacaatggt gcggactaaa aaatcgggaa aaaaacccat
     2161 taatttagaa ataccatcgg ccgaatttgt ctgaccgacc tgctgatttg cttcaagctc
     2221 actggtagtt ttttgcacca catccagcaa cgtatctgtt ggcaaatagt atgttttgat
     2281 aacagtttct tcgccctggt cggacataga gcgctttata gcgatagaaa agcaaaggtg
     2341 gttccgtgca aagattttat tgaaaatgat aaaccggttc agatacgggc gttgtgaaaa
     2401 aaggcggacc agcgaagcca ttaccacctg cataatggag aggttgggaa tttcctcttt
     2461 gtggcttcga ataaattctt caatgatgtc aatgggtact tttacttcaa aaaaaacctc
     2521 tgaagctgtc cgtttggaaa gtacaaatgg aacaaccgaa aaaagggcat caacttttcg
     2581 caccctccac ccatcgtagc gatctcctaa actccagccg taatacttca atttgtttag
     2641 ctttgccatt ctgaagaatt ttaagtttaa ctttgccaaa gatacacttt ctttttaaaa
     2701 aatggtattt tgaagctacg gatgattaaa aaaaaaacgg atatttgagg ccaatccggt
     2761 tttatttcag acttaatttc atcaattcat tttcaacaat ctgttcattg tctatcataa
     2821 accgaacgac ctgcaacact tttggttctt tgtaggggac ctttttgacc agtgcattta
     2881 aggtcaattc atcggttgcc aatatttgtt gaatatgctg ttgaattgct tcaaaatctt
     2941 cggttgaaac ctgtgtctct ttctttttca ggcaaatatc acattttccg cagggagtgg
     3001 tttctttctc gccaaaatat gaaagcaaca cctggctccg gcaattattc tcttcctgcg
     3061 cataatccag cacacttttc actcgcgaaa tatagcggtc gcgacgatct tcgtaagttt
     3121 ctttggtcaa aacaattcta cttgtggctt cccgctcgcg ggtgaaagta agaaacggcg
     3181 ttttcttacg gggaataaac tgaacaacat gctctttagc caacataacc aattgatcat
     3241 acacttgctc gcgggtccat tccagccgtt ttgccaatat gtcctcgctt atagaagcca
     3301 aatcggtaaa caaaccggtg tacgaccgca acaaaatatg aatcagccgt tcctgttcgg
     3361 gattgtgttt taatttatat aaatcgtctt ttccaaccgt aaaaaggacc cgcgacgaac
     3421 tgtcctgttc gtctgtcaat
//
LOCUS       DATDNM010000217         2797 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1950210, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000217 DATDNM010000000
VERSION     DATDNM010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2797
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1950210"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VI413_03705"
     CDS             <1..209
                     /locus_tag="VI413_03705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008622389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6913759.1"
                     /translation="THEFDITTIINSHDMNSVMEIGENIIFINKGEMAWQGNKDDIFH
                     VDNEALNDFVFASELYKQVKKANQ"
     gene            292..1053
                     /locus_tag="VI413_03710"
     CDS             292..1053
                     /locus_tag="VI413_03710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008765510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEY6913760.1"
                     /translation="MKIISYNVNGIRAALTKNFTEWLQAENPDVLCLQETKAQPDQID
                     TMLFAELGYTSYLHSAEKKGYSGVAILTKEAPDNVVIGMNHSRYDNEGRVIRADYGDL
                     SIISVYIPSGSSGDERQAFKMDFLAEFAPFVAELRKTRPNLIICGDYNICHKPIDINH
                     PERQVGVSGFLPEEREWLDRFEATGMVDSFREFDKSPEKYSWWSYRGGARFRNAGWRI
                     DYHWVTEPLRGRLKSAAILDDAVHSDHCPVVVELD"
     gene            1289..2686
                     /locus_tag="VI413_03715"
     CDS             1289..2686
                     /locus_tag="VI413_03715"
                     /inference="COORDINATES: protein motif:HMM:NF039698.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6242 domain-containing protein"
                     /protein_id="HEY6913761.1"
                     /translation="MKFNFFRFTLLFSVIVLLSSCLGTTETTDLSTNPSFSSLTFAAN
                     DSIPNLEDADFTLEFDPLVGDSVIVNLDSLPYNTRIDSVYPTFGFKSSSAQYLIYEND
                     TVPLDGTDTIDFTIQPVKIRNFAADKTHSRDYFVKVNVHQVEPEQYSWNKVSESVDSH
                     DATSQKAIVFNDTIFYYLNNGSAAYLYKSTDGKSWEEQSVSGLPVNTSLADMQLFNGK
                     LYLTQDGDKIYSSSDRHNWTLKTNPDYTYKSLLFTFQNKLWAVVQSKSAAVNRFATST
                     DGVVWIIGDVIPTSFPVSGFTSLAFSSRTGKSKVIVLGGVLSTGDKSNHCWTTEGEIV
                     NGSFYWADFNFDNSNHSLDTLAAGASIISYDKKLFVFGLRTDTVAPHFKQSVNEGLSW
                     QTPDSAYNYLPVDFEARNYQSAFVFKPRTYNSTDTKEQNQASNKIFIIGGKTATSVKT
                     DVWMGKLNRKNFLRQ"
BASE COUNT          833 a          483 c          591 g          890 t
ORIGIN      
        1 taactcacga gtttgatata actactatta ttaactcgca cgatatgaac tcagtaatgg
       61 aaattggtga gaatataatt tttattaaca agggggaaat ggcctggcaa gggaacaaag
      121 atgatatttt tcatgttgat aatgaggcgt tgaacgattt cgtttttgcg tcggagttat
      181 ataaacaagt gaaaaaagcg aatcaatgaa acgagcattc cactactgtt aattagttgc
      241 ggttttttac aatgcgagtt ccagtcgact ttaaattaaa attattatcg gatgaaaatt
      301 atttcctaca atgtaaatgg tatccgtgcc gcactaacaa agaattttac cgaatggctt
      361 caggccgaaa accctgatgt gctttgcctt caggaaacga aagcacagcc tgatcagata
      421 gacacaatgc tttttgccga gctgggatat accagttatt tgcattctgc cgaaaaaaaa
      481 ggatacagtg gtgtagctat tctgactaaa gaggctcccg ataacgtggt aatcggaatg
      541 aatcattcgc gttacgataa tgaaggtcgc gttattcgtg ctgattatgg tgatttatct
      601 attataagtg tttatatccc ttcaggctca tcgggtgatg aacgtcaggc ttttaaaatg
      661 gattttctgg ctgagtttgc cccgtttgta gctgagttgc gcaaaacccg gcctaatctg
      721 ataatttgcg gtgactataa catttgccat aaacctattg atattaatca tccggaacgc
      781 caggtaggag tttcaggttt tttacccgag gaacgcgaat ggttggatcg gtttgaagca
      841 actggcatgg tagattcgtt ccgtgaattt gataaaagtc ctgaaaaata cagttggtgg
      901 agttaccgcg gaggtgcccg ttttcgtaat gcaggctggc gtattgatta ccattgggtt
      961 accgagccgc ttcgagggcg attgaaatcg gcagccatac tggatgatgc tgtgcattcc
     1021 gatcattgcc ccgttgttgt tgaattggac taagcttttt atctggacac aaagatttta
     1081 aaccggaatt tatgtcgttt tttactcaag gcttgtattt atcttgcttt gaatgataaa
     1141 aaatgataaa tctttgtcag agtggtttat atgacctaaa atgtttttaa ctttgctcgt
     1201 tcttaaaaaa tacttgtcaa tatgaaatga gttcctgata aaaaggtgcc cattccgtat
     1261 gacccgaaaa aaaataaaaa atatacgcat gaaatttaat tttttcaggt ttactcttct
     1321 gttttctgta atcgttttgc tgagttcttg cttaggcact acagaaacaa cagacttatc
     1381 tacaaatcca agtttttcat ctcttacttt tgctgcgaat gatagtatcc caaatcttga
     1441 agatgctgat tttacgcttg agtttgatcc gttagtgggt gactctgtta ttgtaaacct
     1501 ggattcattg ccctataaca cgcgcattga tagtgtttat cccacttttg gtttcaagag
     1561 ttcttcggct caatatctga tttacgaaaa cgatacagtg cctttagatg gtaccgatac
     1621 aatcgatttt acgatacaac cagtcaaaat aaggaatttt gcagctgata agacacattc
     1681 cagagactat tttgtcaaag tcaatgttca tcaggtggag ccggaacagt acagctggaa
     1741 taaagtatcg gaaagtgttg attcacatga tgctaccagc cagaaagcga ttgtttttaa
     1801 tgataccatc ttttattatt tgaataatgg ttctgccgct tatctttata aatcaacgga
     1861 tggaaaatcc tgggaagagc aatctgttag tgggttgccg gtaaatacat cgctcgccga
     1921 tatgcaatta ttcaatggaa aattgtattt gacgcaggat ggtgataaaa tttattcaag
     1981 ttcagatcgt cataattgga cactaaaaac gaatccggat tatacgtata aatctttact
     2041 ttttactttt caaaataaat tatgggctgt agtgcaatca aaaagtgctg ctgttaaccg
     2101 ttttgcaact tcgactgatg gtgttgtgtg gataattggc gacgtaattc ctacaagctt
     2161 cccggtaagt ggctttacct cacttgcgtt ttcgagccgg acaggaaagt ctaaagtgat
     2221 tgtgctgggt ggtgtgctga gtacaggtga taaatcgaac cattgctgga ctactgaagg
     2281 tgaaatcgta aacggaagtt tttactgggc tgattttaat tttgataata gcaatcactc
     2341 gctggatact ttggctgcag gtgcttcgat tatcagctac gataaaaagt tattcgtttt
     2401 cgggttgaga actgatacag ttgctccaca ttttaaacaa tcggttaatg aaggattgag
     2461 ttggcagaca ccagatagtg cttacaatta tctgccggtc gatttcgaag ccagaaacta
     2521 tcaatcagcc tttgttttta aaccaagaac ttacaactca acagacacaa aggagcaaaa
     2581 tcaggcatca aacaaaattt ttattattgg gggaaaaacg gcaacttcgg ttaaaactga
     2641 tgtttggatg ggaaaactaa ataggaaaaa tttcttacgc caataggctg taaatatgta
     2701 acttggaaag gtgcttctga cttcggaagc accttttttc attatcagaa gtttatttct
     2761 gataatttta cttacttttg tgccgtcaaa aaaacag
//
LOCUS       DATDNM010000218         2476 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_775213, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000218 DATDNM010000000
VERSION     DATDNM010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_775213"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /locus_tag="VI413_03720"
     CDS             <1..198
                     /locus_tag="VI413_03720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008862067.1"
                     /note="catalyzes the interconversion of
                     tetrahydrodipicolinate and L,L-diaminopimelate in lysine
                     biosynthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEY6913762.1"
                     /translation="APYVWVKTPNNMKSWDFFDKLLNEANVVGTPGSGFGPSGEGYFR
                     FSAFADRNNVLEAMERVKNLK"
     gene            complement(261..1622)
                     /locus_tag="VI413_03725"
     CDS             complement(261..1622)
                     /locus_tag="VI413_03725"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY6913763.1"
                     /translation="MKRTAGKRILWTMLILLVVGLAYGVYYLNSLMPIVTGYPAKYLC
                     SAVFVSGREQAEVEAMDLHFSFIKYTKSKVDFQDSSVTSSFLWGKSKAIYRKGFGATL
                     LRGVSESDLRKIKFPGIARTTYNQDTIKWPMGNVMPAKPTNIDTVRLEEIIERLMDDD
                     GYNGHAFAFMVVHKGVPVAEAYQPQFNEKTRFQSWSMAKSFTNTLAGIMVKDGKWDIN
                     QPINIPEWQSDDRKKITYKNLMQAESGLLWNEDYGNRSDVTVMLYCENDFARFVFGRP
                     LQFPVGSNWTYSSGNPNIVTFQIRQTLKNDQEYYKFPYTRLFDKIGMPDALFEVDASG
                     TFVGSSYIYATARDFARYGLLIMQDGVFNGERILPEGWVSFATSPNAKSEGNYGALYW
                     LNKSGKMPSVPRDMYWCQGYDGQRIFMIPSKELIVVVLGFSHNLNVMNCDQLLSDIIG
                     TIR"
     gene            1831..>2476
                     /locus_tag="VI413_03730"
     CDS             1831..>2476
                     /locus_tag="VI413_03730"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6913764.1"
                     /translation="MKNTSKKAIYYQPISMESLGRFYQEKVCFFVIVLLLIIHGTAAF
                     AQKSNENPQPLLKGQVLNLEDETPVVKAIVTNQRTKETVTADLMGRFTINALNTDSLE
                     ISALGFSKQTISIPSNYSNSNILVIYANTLRFLLPNVNITGNYQKPILKVEKIEVSPY
                     FRNEFMQEKPAEEKAYQNQISFLKVPLYGKAQPSRKSRNSLKADKQWATVSRIYN"
BASE COUNT          743 a          534 c          474 g          725 t
ORIGIN      
        1 gcaccatacg tttgggtaaa aacaccaaac aatatgaaat cgtgggattt cttcgataaa
       61 ctgttgaatg aagcgaatgt ggttggaacg ccaggctcag gttttggacc atcgggcgaa
      121 ggctatttcc gcttttcggc ctttgccgac cgcaacaatg tgttagaagc catggagcgg
      181 gttaaaaatc tgaaataact gttttggata ttatatttta gtcagggttt cacttcatgt
      241 gaagccctga ctttttttat ctatcggatt gtaccaataa tgtcacttag caattgatcg
      301 caattcatca cattgaggtt atgagaaaat ccaagaacca ccacaatcaa ctctttcgaa
      361 ggaatcataa aaatccgctg cccatcatac ccctgacacc aatacatatc ccgcggaact
      421 gaaggcattt tccccgattt gttcagccaa taaagtgcgc cgtaattacc ttcactttta
      481 gcgtttggac ttgtcgcaaa cgaaacccaa ccttcaggca aaatacgttc accattgaac
      541 acaccgtcct gcataatcaa caatccatag cgggcaaaat cgcgggcagt agcataaata
      601 taggatgaac ctacaaaagt tccggaagca tcaacttcaa aaagggcatc gggcatcccg
      661 attttatcaa ataaccgggt atacggaaac ttatagtatt cctgatcgtt tttgagagtt
      721 tgtcgaattt ggaatgtgac tatatttgga tttccggaag aatatgtcca attgcttcca
      781 accggaaatt ggagtggccg gccaaacaca aaacgggcaa agtcattttc acaataaagc
      841 atcactgtaa catccgagcg gttgccataa tcttcattcc agagcaaccc gctttcagcc
      901 tgcattaaat ttttataggt gatttttttg cggtcgtcac tttgccattc aggaatattg
      961 atgggctgat taatgtccca ttttccatct tttaccatga ttccagccaa cgtgtttgta
     1021 aagcttttgg ccatcgacca gctttggaaa cgtgtttttt cgttgaattg cggctgataa
     1081 gcttctgcca ccggcacccc tttgtgaacc accataaaag caaatgcatg accattgtat
     1141 ccgtcgtcat ccatcaaacg ctctattatt tcctccagtc ttacggtgtc aatgtttgtt
     1201 ggttttgcag gcattacatt tcccattggc cactttattg tatcctgatt gtaagttgtc
     1261 ctggcaattc cgggaaattt aatttttcga aggtcgcttt cactgacgcc acgcagcaaa
     1321 gtagcgccaa agcctttccg ataaatggcc ttcgattttc cccataaaaa ggagctggtt
     1381 acgctcgaat cctgaaaatc aactttactc ttggtgtatt tgatgaatga aaagtgaaga
     1441 tccatggctt caacttcggc ctgttcgcgt cctgaaacaa aaaccgcaga acaaaggtat
     1501 ttggccggat agccggtgac aattggcatt agagaattaa gatagtaaac gccatatgcc
     1561 aaaccaacaa cgaggaggat cagcatagtc caaagtattc gttttccggc agttcgtttc
     1621 ataatgtttg gggttagtga taattattca ggcatttatt gaataaagtt aaataatccg
     1681 gttgaatttc ccttttgtct tttccctttt ttcagttgta tatgtctgtt aaataccgtt
     1741 aacgaatgtt agttctgata aatagtattt tgttaatgca taactttgtc tcaaagccat
     1801 gaacccaata tttttctaat cagccttcag gtgaagaata ccagcaaaaa agctatttat
     1861 tatcagccca tttcaatgga atctttgggc cgtttttatc aggagaaggt ttgttttttc
     1921 gttatcgtat tattgctaat tattcatgga acagcagcat tcgcccaaaa atcaaatgaa
     1981 aatcctcaac cattgcttaa aggtcaggtt ttgaacctgg aagatgaaac gcctgtggtt
     2041 aaagcaattg ttactaatca acgaacaaaa gaaactgtaa cagcagatct gatggggcgg
     2101 ttcacgatca atgcattgaa taccgacagc ctcgaaataa gcgctctggg ttttagcaag
     2161 caaaccattt caattccttc taattacagc aattcaaaca tcctggttat ttatgccaac
     2221 actcttcggt ttctgttacc caatgtaaat atcaccggaa actatcaaaa acctattctg
     2281 aaagtcgaaa aaatcgaagt ttctccatat tttcgaaatg agttcatgca ggaaaaacca
     2341 gcagaagaga aagcctacca aaaccaaatc agctttttaa aggttccatt atacggcaaa
     2401 gcacagccca gccgcaaatc cagaaattcg ctgaaagccg acaaacaatg ggctacggtt
     2461 tcgagaattt acaatg
//
LOCUS       DATDNM010000219         5554 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1416803, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000219 DATDNM010000000
VERSION     DATDNM010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5554
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1416803"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(310..1626)
                     /gene="hisD"
                     /locus_tag="VI413_03735"
     CDS             complement(310..1626)
                     /gene="hisD"
                     /locus_tag="VI413_03735"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEY6913765.1"
                     /translation="MQVIKYPPREDWSTLLARPTFDSTSLFDTVQKVLDDIRKHGDKA
                     VKKYTQQFDKVNLETLEVTKEEIDEAEKLISPNLKQAIEMARRNIWKFHSEQQQELPE
                     IQTSPGVYCWQKAIAIEKVGLYVPGGTAPLFSTVLMLGIPAQIAECREVVLCTPPNKE
                     GKIHPAVLYAAKVAGVHRIFKIGGTQAIGAMAYGTESVPKVYKIFGPGNQYVTAAKQL
                     VSLRDVAIDMPAGPSEVEVIADETANPAFVAADLLSQAEHGVDSQSILVTVSEKIVEH
                     VLEQIEIQIEQLPRKEFARKALANSKIIVLKNLEEAVDMTNEYAPEHLIISTRYYMGV
                     AANIINAGSVFLGNYTPESAGDYASGTNHTLPTNGYAKAYNGVNLDSYIRKITFQQIT
                     PEGLTNLSNAIILMAESEDLMAHSNAVKIRLNEEKEVEVRESRHPR"
     gene            complement(1711..2430)
                     /locus_tag="VI413_03740"
     CDS             complement(1711..2430)
                     /locus_tag="VI413_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEY6913766.1"
                     /translation="MFTAEKKKFILTRNYPRFEPKAIFFDMDGVLFDSMKNHATAWVQ
                     AMQQTGLPFTEYEAYMNEGRTGASTIDSVFVQIHGRKATEEEKQQIYRLKSNLFEKCG
                     KTERMPYALELLRKIQVQQLEIFVVTGSGQPTLLDSLENSFPGVFQKEKMVTAFDVKY
                     GKPHPEPYLMALKKSGLQPWEVLVVENAPLGVESATAAGLFTIGVNTGPLNPEVLSES
                     GAGIVLAGMKELHDHWEKIVS"
     gene            2654..2726
                     /locus_tag="VI413_03745"
     tRNA            2654..2726
                     /locus_tag="VI413_03745"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2687..2689,aa:Pro,seq:cgg)
     gene            complement(2773..3504)
                     /locus_tag="VI413_03750"
     CDS             complement(2773..3504)
                     /locus_tag="VI413_03750"
                     /inference="COORDINATES: protein motif:HMM:TIGR02145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibrobacter succinogenes major paralogous
                     domain-containing protein"
                     /protein_id="HEY6913767.1"
                     /translation="MKTIRNLRKLSLMFIGFGVIYLSSCKTVDEPIFGGTVTDIDGNV
                     YHTVTVGPQTWLVENLKTTHFNDSAVIPLVTDSAEWGNMVTPARCWYNNDSANYNETY
                     GQLYNWHTVNTGKLAPKGWHIPTNEEWVILENNVSKYYYKSASLAKILASNTLWEPSV
                     SSGTVGNKLSENNYSGFSAIPGGYRINYKHSFGKIDSVGVWWSSSQTDSIRLAWTLSI
                     KNDQSTVDRAKFLKWRGYSVRCIKD"
     gene            complement(3536..4069)
                     /locus_tag="VI413_03755"
     CDS             complement(3536..4069)
                     /locus_tag="VI413_03755"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEY6913768.1"
                     /translation="MTSNKLIISILVLFVFIASSCSKDDPTESIVKWKSDNDSYFANM
                     KDSTGYIKDTVATSIGNLFYYYKITTPGDQSSTNPTYSSYVKVNYKGSLITGSIFDET
                     YTGSNPENDSTAKPANFYANQLIPGWTINLTQMKTGEIRTIVLPHELCYGIYGMGPVI
                     PPYSTLKFDIQLISFTN"
     gene            4527..5429
                     /locus_tag="VI413_03760"
     CDS             4527..5429
                     /locus_tag="VI413_03760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913769.1"
                     /translation="MKKLLFLLTFTFAIFTANALIYSVTVPTGTKACYIAGDMNGWNQ
                     QLMTKVNETHYTIEIPIANTTHKYKYCSGPGWGFVEKAADGSEIDNRSYAVNDIVAGW
                     AAIYDKSVKNVSVKYNVTVPQGTQCCYIVGGWNGWKTFRAMKRIDATHFTVTILSNKL
                     FKYNYFAGKGWGYMELGANKIVRADRNYSTDDVVLDWAAVYDKAVPDADITYSVTVPE
                     GTNSCYIAGSWNRWLFLEMEKVDSRHFSITLRSNKALKYLYLSGPDWNCIEVNPGKNG
                     VFVRSYSDNDVVLGWKSVWKQKNE"
BASE COUNT         1532 a          994 c         1095 g         1933 t
ORIGIN      
        1 ggaacagcct tcaatggtat ttattttgct gccgatgaat ggcaaagctt ccccgctttt
       61 aaaatcaatg ccggcaccat gcccaaaaat ccatttactc gattcgtact gggcatttac
      121 attgaaacgg cctatgagca aaaagataat gagtgataaa aatatagttc ctgtatgttg
      181 atttttatta ttgcacatgt ttggtttatt gataaataat gtaagctgaa aggttaaata
      241 aacaaatcaa tatcttttac atttttatta aaaaataaac cggcacgtat ccagattatt
      301 tatgacattt tatctggggt gtctgctttc ccgtacttca acttcttttt cttcgtttaa
      361 ccgtattttt acagcattac tatgtgccat tagatcttca ctttcggcca ttagaataat
      421 agcattgcta aggtttgtca ggccttcggg tgtgatttgc tggaaggtta tctttcggat
      481 atagctgtcc agatttacac cattgtacgc ttttgcatag ccatttgtag gcaaagtgtg
      541 attggttcct gaagcataat caccggcgct ttcaggggtg taattgccta agaaaactga
      601 gcctgcattg attatgttgg ctgcaacacc catataatag cgcgtggaaa ttatgaggtg
      661 ttcaggtgcg tattcgtttg tcatatccac agcttcttcc agattcttca atacaataat
      721 tttgctgttt gccaacgctt tacgtgcaaa ttcttttcgt ggaagttgtt ctatctgtat
      781 ttctatttgt tctaaaacat gttctactat tttttcacta acagttacta aaatagactg
      841 actatcaaca ccatgttctg cttgtgataa caaatcggca gccacaaagg caggattggc
      901 ggtttcgtct gctattactt ccacttctga aggacctgct ggcatgtcta tggccacatc
      961 gcgcaaagaa accaattgtt tggcggcagt tacatattga tttcccggtc caaatatttt
     1021 atatacttta ggtaccgatt cagttccgta agccattgcg ccaattgctt gtgttccacc
     1081 aattttaaaa atgcgatgta cacctgctac cttggctgca tacaacacag cagggtggat
     1141 tttaccttct ttatttggtg gggtgcaaag cactacttcc ctgcattctg ctatttgggc
     1201 cggaatacca agcattaata ccgttgaaaa taatggggcg gttcctcccg gaacgtataa
     1261 tcctactttt tcgatggcga tggctttttg ccagcaatat acacccggtg aagtttgtat
     1321 ttcaggcagt tcctgttgtt gctccgaatg gaatttccat atattgcgac gtgccatctc
     1381 aatggcttgc ttcaggttgg gcgaaatcag tttttcagct tcatcaattt cttccttggt
     1441 tacctccagt gtctcaaggt tgactttgtc aaattgctga gtgtattttt ttacggcttt
     1501 atcaccatgt tttcgaatat catccaatac tttttgtacc gtgtcaaaca gcgaagtact
     1561 gtcgaaagta gggcgggcga ggagtgttga ccaatcttca cggggtggat atttgataac
     1621 ctgcatatta tgttgtttta tttaatttct tgtttttatt ttcttcgcta tatcaacttg
     1681 ctaattcgtt attttaatcg caactgtttt ctaagaaact attttttccc agtggtcgtg
     1741 caattctttc atccctgcta aaactatccc tgctccactt tcagataaaa cttccggatt
     1801 cagtgggcct gtgtttacgc cgattgtgaa tagtcctgct gccgttgctg attctactcc
     1861 caatggagca ttttccacta ctagcacttc ccatggttga agtccggatt tttttagagc
     1921 cattaaatag ggctcgggat ggggtttgcc atatttaaca tcaaaggccg taaccatttt
     1981 ctctttttga aaaacgcccg gaaaactatt ttccagactg tcgagtaaag tcggctggcc
     2041 agaacctgta acaacgaata tctctaattg ttgcacctgg atttttcgca gtaattctaa
     2101 cgcatatggc attcgttctg ttttaccaca cttttcaaat aagtttgatt tcaacctgta
     2161 gatctgttgt ttctcttcct cagttgcctt tcggccatgt atttgaacaa aaacactatc
     2221 aattgtagac gcaccggtac gtccctcatt catgtaagct tcgtattcgg tgaaaggaag
     2281 tccggtttgc tgcatggcct gtacccaagc agtggcatgg tttttcattg aatcgaaaag
     2341 aacgccatcc atatcaaaaa atattgcttt aggttcaaat ctgggataat ttctggtcag
     2401 aataaatttt tttttctcgg ctgtaaacat gtagttaaaa ttttatgcaa agatactgat
     2461 tttgtcactt ataagcgaat tttttgtaat gctgatggtc attttatata caaaaaggta
     2521 taaaaaaggt ttgtttgatt attttgtggt tcttttctga tcggtatttt taatatttga
     2581 taagtaaaaa agggatcaga ttttattttg actaaataaa aattattgta attttgtatg
     2641 ataattcaaa aggcgggatg tggcgcagtt ggtagcgcgc tacgttcggg acgtagaggt
     2701 cgcaggttcg aatcttgtca tcccgacata aaaaagcctg gtaacgaata agttatcagg
     2761 ctttttttgt actcaatctt ttatgcagcg tacagaatat cctctccatt ttaaaaattt
     2821 agccctatcg acagtgcttt ggtcattttt aatggataat gtccaggcta atctaattga
     2881 gtccgtttgg gaggagctcc accacacgcc tacagagtct attttgccga atgaatgttt
     2941 gtaattaata cgataacctc cggggatggc tgaaaagcca gagtaattgt tctccgataa
     3001 tttgttccca actgtaccac tactcacaga aggttcccaa agcgtattag aagccaaaat
     3061 cttagccagt gatgccgatt tataataata tttactcaca ttgttttcga ggattaccca
     3121 ttcttcgtta gtgggaatgt gccagccctt tggcgccaac tttcccgtgt ttacagtgtg
     3181 ccaattgtat aactgcccgt aggtttcatt ataattagct gaatcattat tgtaccaaca
     3241 acgggcaggt gtaaccatgt ttccccattc ggcactgtca gttactagtg gaataacagc
     3301 actgtcatta aagtgtgtgg tttttagatt ttcaaccagc cacgtttggg ggccaacagt
     3361 aactgtatga tacacgtttc catcaatgtc ggtaactgtc cctccaaata tgggttcatc
     3421 aactgtttta cagctgctta aatatataac tccaaagcca ataaacatta ggctgagttt
     3481 tctgagatta cgaattgttt tcaaaatatg atgtttattg agagttatga cttgtttagt
     3541 tggtgaatga aatcagttgg atatcaaact ttaatgttga ataaggaggt ataactggtc
     3601 ccattccata aattccataa caaagttcat gggggagtac aatggtgcgt atttcgcctg
     3661 ttttcatttg tgttaaattt atggtccaac ccggtatcaa ttgatttgca taaaaatttg
     3721 ccggttttgc tgtgctatca ttctcagggt tgcttcctgt gtaggtttca tcaaaaatac
     3781 taccggtaat taagctccct ttgtaattta ctttgacata gctactgtag gtcggattcg
     3841 tactactttg atctccgggc gtggtgattt tgtagtaata aaataaattt ccaatgcttg
     3901 ttgcaaccgt gtcttttatg tatccggtgc tatctttcat atttgcaaag taactgtcat
     3961 tatctgattt ccacttgacg atggactcag tgggatcatc cttgctgcac gaactggcaa
     4021 taaacacgaa taaaacaaga atggagataa tcaatttgtt gcttgtcatt tttatatgtt
     4081 taggtgatat ttgagaaaat aatggcataa gttttcaatt gagaggcaaa gctagctata
     4141 ttatttggaa attaaaaaga aacttttaat taatttgttg atgaaaagca aggagttttg
     4201 gcaatacttc aacaagtaat ttcattacaa ctgtaataat ctttttatac ttagaataac
     4261 catcaacggc tgatattgaa actttttcag actcgtattt gttttattta ataactaatc
     4321 tattttattt tatccttgaa tttcagtgca tttaatcaca actggtttgt atggcattga
     4381 gtcgaaaaat cagagcgaaa aacttgtttc cttttagaga aaactctatt gtttattgcg
     4441 aacgatttta ttctactctg aattattgat ttatattcgt ttcagactat attcgattgt
     4501 tttgatttac ctaaaaactt tttgctatga aaaagttatt gtttcttttg acttttacgt
     4561 ttgctatttt tactgcaaac gctttgattt attctgttac tgtccctaca ggcacaaaag
     4621 cttgttacat tgcgggtgat atgaatggct ggaatcaaca attaatgact aaagtgaatg
     4681 agactcatta taccatagaa attccgatag caaatactac acataaatat aaatattgtt
     4741 ccgggcccgg ctggggattt gttgaaaaag cagccgatgg tagcgaaata gataaccggt
     4801 cgtatgctgt gaatgatatt gttgctggtt gggcggcaat ttatgacaag agtgtaaaaa
     4861 atgtaagtgt gaaatataat gtaaccgtgc ctcaaggtac ccaatgttgc tatattgtag
     4921 gtggttggaa tggttggaag acatttcggg cgatgaaacg gatagatgct acacatttca
     4981 cggttactat tttgtcgaac aagttgttta aatacaatta ttttgcaggt aaaggttggg
     5041 gttatatgga attaggtgca aataaaattg ttcgtgctga cagaaattat tcaactgacg
     5101 atgttgtgtt agattgggct gctgtctatg acaaagccgt tccggatgcc gacatcacat
     5161 actcggtaac tgttccggag ggcaccaata gttgctatat tgcgggtagt tggaatcgct
     5221 ggttgttttt ggagatggaa aaggttgatt caagacattt ttctattact ctgagatcga
     5281 acaaagcatt gaaatatctg tatttgtcag gtcccgactg gaattgcatt gaagtaaacc
     5341 ctggtaaaaa tggagttttt gtaaggtctt actctgacaa cgatgtggtt ttgggctgga
     5401 agtcagtttg gaaacaaaaa aatgaataga ttttcagttt agctggttgt agattttgaa
     5461 ctaacttagt tacaatatac atcgaaaatt aaagctaatt taagatactt tttttttgaa
     5521 ttttcgttgt gtattttcgt tgtgaataaa ccta
//
LOCUS       DATDNM010000220         2435 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1522960, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000220 DATDNM010000000
VERSION     DATDNM010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1522960"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1127
                     /locus_tag="VI413_03765"
     CDS             <1..1127
                     /locus_tag="VI413_03765"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyloxyacyl hydrolase"
                     /protein_id="HEY6913770.1"
                     /translation="TSRTKYPAFLKNSYFNFNFGYINFPFSSEQLEPGYHVESITNHH
                     FGMRLIFFGHQFNKNLSAQVSYMKPLQYVIYNNINGDNDKHSVWMHSGTLSLKGQVPV
                     AKRLSAYGEAGLAIFSRRGFQINNSFAVKNYSYSTVLLGAGLEYHLTPKWGLLANFNY
                     APGNSANRQPHEVFYSGGVKYNLTPIPDEIVKRNAESGYHFPKHILQVGYSTNALSYW
                     PNNFFSKKFAIFWGGGIEVKNGLAVRYQKNIFHTRKVFSFDAGVSAGYWKSKESDEAF
                     YTLSLFPTLRFTVIRSKSADFYLFYSVAGPSYISKTVIDDKESGKHFTFQDMMGFGSF
                     IGAQKKLNLDVSINHYSNGNIFVYNRGVKIPLTFTLGYDF"
     gene            1200..1706
                     /locus_tag="VI413_03770"
     CDS             1200..1706
                     /locus_tag="VI413_03770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913771.1"
                     /translation="MENSYQTNDVLAQHRPKELPGMLNVLTILTIIGCVIGYISSCYS
                     YFTNNDPDAQIQKLNEAKEKMGDSGFGAKMIDSSIDMVQKSYDNRYLLLITGLIFTTL
                     CLIGALQMRKLKKTGYYFYLVGELAPIVLMAGLFGSSFFGAFALLFAALISVIFVILY
                     STQLKHLS"
     gene            1783..2184
                     /locus_tag="VI413_03775"
     CDS             1783..2184
                     /locus_tag="VI413_03775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007213972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEY6913772.1"
                     /translation="MKLFVAGLPYDFDDAELMEFFEKFGKVNSAKVALDKETGKSRGF
                     AFVDMMNDDEAKEAIESLNGLELGRGKTMVVKEADDKGGSGGGGGYKGGGGGGGYRGG
                     GSGGGGYRGGGGGGYNKGGGGGGYRGGGGRY"
     gene            2245..>2435
                     /locus_tag="VI413_03780"
     CDS             2245..>2435
                     /locus_tag="VI413_03780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007653107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HEY6913773.1"
                     /translation="MNRIDRLFGILVLLQSKKYVTAEAIGEKFGISVRTVYRDVKALC
                     EQGVPVSFEQHRGYFIVQG"
BASE COUNT          719 a          433 c          545 g          738 t
ORIGIN      
        1 atacatccag aacaaaatat cctgctttcc tgaaaaattc ctatttcaat ttcaattttg
       61 gatacatcaa ctttcctttt tcatctgaac aattagagcc cggctatcac gttgaatcaa
      121 taaccaatca ccattttggt atgcggttaa tttttttcgg tcaccagttc aataaaaact
      181 tgtctgcaca ggtgagctat atgaagccat tgcagtatgt catttataac aacatcaatg
      241 gcgacaatga caagcattcg gtatggatgc attcaggcac actttcattg aaaggacaag
      301 tgcctgttgc caaaagactt tcggcttacg gtgaagctgg tctggctatt tttagtcggc
      361 gcggatttca aatcaacaat tcctttgctg taaaaaatta tagttatagt acagtgttac
      421 ttggagcagg cctggaatac catctaactc ctaaatgggg attgcttgcc aacttcaatt
      481 atgctccggg taattccgca aacaggcaac cccacgaagt tttttattct gggggagtaa
      541 agtataacct tacccccatt cctgatgaaa tagtaaaaag gaatgcagaa tcaggatatc
      601 attttcccaa acatatctta caagtgggct attcaacaaa tgcgttgagc tactggccaa
      661 ataatttctt ttcgaaaaag ttcgccattt tttggggcgg aggaatagag gtgaaaaatg
      721 gtttagcggt tcgctatcaa aaaaatattt ttcacacacg taaagtgttt tcatttgatg
      781 cgggtgtaag tgccggttac tggaagagca aggagagcga tgaggcattc tacactttat
      841 ctctatttcc tacactgagg ttcactgtta tcagatcgaa atcagctgac ttttatttat
      901 tttattcagt ggccgggcca agttatattt caaaaacagt tattgacgat aaagaaagtg
      961 gaaagcattt tactttccag gacatgatgg gttttggaag ttttatcggc gctcaaaaga
     1021 agctaaatct ggacgtcagc atcaaccact actccaatgg caatattttc gtgtataatc
     1081 gcggcgtaaa aatcccatta acgtttacac ttggatatga tttttgattt aattgagatt
     1141 agaattacaa aagttattgt tctaaaattt ttttgaatct atcttgccga aaaatttcca
     1201 tggaaaattc ttaccaaact aacgacgtgc ttgctcaaca tagaccgaag gaattgccgg
     1261 gcatgttgaa tgtactcacc atcttgacaa ttatcggttg tgttattggc tacattagct
     1321 cttgctacag ctattttacg aataatgatc cagatgcaca gattcagaaa ctaaatgagg
     1381 caaaagagaa aatgggagat agcggattcg gcgcaaaaat gattgacagc tcaattgaca
     1441 tggttcaaaa gtcttacgat aatagatatc ttctgcttat taccggactg atatttacca
     1501 cgctttgttt aattggggca ttacaaatgc gtaaactgaa aaagactgga tactattttt
     1561 atttggtagg tgagttggcg ccaattgtac taatggcggg gctgtttggc tcaagctttt
     1621 tcggtgcttt tgcactgctg tttgcggctt tgatttcagt gatattcgta attctataca
     1681 gcacacaatt aaaacattta tcataggtat caatacttaa tcaagaaaaa ctcgaaggca
     1741 ggcagtaaat aacttgcgta ccttcattta ataattattt gtatgaaact ttttgttgcg
     1801 ggactccctt acgattttga cgatgcggaa ctgatggaat tctttgaaaa atttggcaag
     1861 gtaaactctg ctaaggttgc tcttgataag gaaaccggta aaagcagggg ctttgctttt
     1921 gttgatatga tgaacgacga tgaagccaaa gaagctatcg aaagcttaaa tggtcttgaa
     1981 ctcggccgtg gaaaaaccat ggtggtgaaa gaagccgacg ataaaggcgg cagtggtggt
     2041 ggtggcggct acaaaggtgg cggcggaggc ggtggttacc gtggcggtgg aagtggaggc
     2101 ggaggttaca gaggtggagg cggtggcggc tacaacaaag gtggcggtgg cggaggttac
     2161 cgtggtggcg gtggacgtta ttgattctaa tcgatacttc atttccttcc ttgcatcggt
     2221 tatatttgat gtagtatttg catcatgaac agaattgacc ggttgtttgg aatacttgtt
     2281 ctacttcaat caaaaaaata tgtaactgct gaagccattg gtgaaaaatt tggcatcagc
     2341 gttcgaacgg tttacaggga cgtaaaagct ttatgtgagc aaggcgttcc tgtaagcttc
     2401 gaacaacaca gaggttattt tattgtccag ggcta
//
LOCUS       DATDNM010000221         3175 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1416885, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000221 DATDNM010000000
VERSION     DATDNM010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1416885"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..395
                     /locus_tag="VI413_03785"
     CDS             <1..395
                     /locus_tag="VI413_03785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913774.1"
                     /translation="DRQEIEKSSSLTVGILQGGGSLFGADFETLLAKKVGLQLGAGLF
                     GYGGGLDFHLNPSIRSSYVALQYWHQGFGTGYTQSVLGPSFVYRGKRWFTAQIGLGYV
                     LGYGPSWPDTAVKSPVILTYAIGAYFPI"
     gene            669..2228
                     /locus_tag="VI413_03790"
     CDS             669..2228
                     /locus_tag="VI413_03790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018667831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-N-arabinofuranosidase"
                     /protein_id="HEY6913775.1"
                     /translation="MKNFFVKSISVLMLATSAVTATAQPQKATAVINADQGTDIINRN
                     IYGQFAEHLGHGIYGGLWVGENSPIPNTHGVWNDVIAALKKIKIPNLRWPGGCFADEY
                     HWMDGIGPREKRARMINTHWGGVVEDNAFGTNEFLNLCEELGTEPYICGNLGSGSVEE
                     MSKWVEYMTFDGESPMANLRKQNGREKPWKVKYFGVGNENWGCGGNMTPEGYSELYRR
                     YATYARNYGENHLYKIAGGANVDDYHWTETLMKNIPRGMMNGISLHNYTFTEGWTNKG
                     NATGFNEDQYFKVLENGQRMDDLITKHAAILDLYDPAKRVGFVVDEWGVWYNVEPNTN
                     PGFLFQQNTLRDALLAGEILNIFHKHCDRVKMANIAQMVNVLQAIIFTEGDKMLLTPT
                     YYVFDMYKVHQDATMLPMTVNSPDYTRLNRNMKAISSTASVDKNGAIHVTLVNIDPKN
                     DIEVSCDVRGTKTTKITDGQIITGKETGTFNTYDNPYQVQLENFKDAKYKNGMLTVKV
                     PAKSLITVELK"
     gene            2308..>3175
                     /locus_tag="VI413_03795"
     CDS             2308..>3175
                     /locus_tag="VI413_03795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008781366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinan endo-1,5-alpha-L-arabinosidase"
                     /protein_id="HEY6913776.1"
                     /translation="MKSISFKPTYIFTGLFIVLCSFATAATYLVKSPNPWKDDYRDIS
                     GLKNYKSWGTYNVHDPSCLKIGDTYYMYSTDAIFFGRRKSDDKKPDIKIGNIQVRSSK
                     DLVNWKFEGWAFDSIPAEAKDWVLSHSDNKGATNIWAPYIVQYKNKFRLYYCVSAFGL
                     QTSYIGLAESDSPLGPWTQKGAVVRTKRGDNMNAIDPSVVTEPETGKMWMHYGSYFGG
                     LYAVQLNPETGFTATFSDQGHFTATRANIRKDNIEAPEIIYNPTFKKYYLFTSYDPLM
                     TTYNVRVGRADKP"
BASE COUNT          985 a          616 c          693 g          881 t
ORIGIN      
        1 ctgatcgaca agaaattgaa aaaagcagta gtcttacagt cgggatactg cagggtggtg
       61 ggtctttatt tggtgccgat ttcgaaactc tgttggcaaa aaaagtcggt ttacaacttg
      121 gcgctgggct ttttggctat ggaggtggtc tggattttca cttaaatcct tcaataagaa
      181 gttcatatgt agccctccag tattggcatc agggatttgg aacaggctat actcaaagtg
      241 tgttaggccc aagctttgtt tatagaggaa aaagatggtt tactgctcaa atcggattag
      301 gttatgtcct cggctatggt ccatcgtggc ctgacacggc tgtaaaatcc cccgtaattc
      361 taacatacgc aataggggct tatttcccga tataaaaata gatattcact atgttcagtc
      421 ttgagcagcc gatcggaaaa acactatcga ctgctcattt tttttcaaac ggttgtttgt
      481 cctcttcaaa gagaattttg tcctctaaca ctcacaacat ttgatatatt tttgtaatgt
      541 catcgaaatc aattgttcga atgacttttt cttgcttgta aataattagt tatcaatata
      601 aacacatgaa acgagcccct aaaaacggga cgagttccat ccggccttta aaaataaatt
      661 attatcgtat gaaaaacttt tttgtaaaat ccatttcagt tttaatgctg gctacatcgg
      721 ctgtaacagc aacggcgcaa ccgcagaaag caacagctgt gattaatgcc gaccagggca
      781 cagacattat caaccggaac atttacggac aatttgccga acatttgggt cacggaattt
      841 atggcggact ttgggtgggc gaaaattctc cgattccaaa tacccatggt gtgtggaatg
      901 atgttattgc ggcattgaag aagataaaaa ttcctaatct tcggtggccc ggaggctgtt
      961 ttgctgatga ataccactgg atggacggta tcgggccgcg tgaaaaacgc gccagaatga
     1021 ttaatacaca ctggggcggt gtggtcgaag acaatgcttt cggaaccaat gagtttttga
     1081 atctttgcga agagcttgga actgagcctt atatttgtgg aaaccttgga agcggaagtg
     1141 tggaggaaat gtcgaaatgg gttgaatata tgactttcga tggcgaaagc ccaatggcaa
     1201 acttgcgcaa gcaaaatggc cgtgagaaac catggaaagt gaaatacttc ggtgttggta
     1261 acgaaaactg gggatgtggt ggaaacatga ctcccgaagg ctattcagaa ttataccgcc
     1321 gttatgctac ttacgctcgt aattacggag aaaaccacct gtataaaatt gctggtggtg
     1381 ccaatgtgga tgattatcat tggacagaaa cgttgatgaa aaatatacca cgtggtatga
     1441 tgaacggcat ttcactgcac aattatacgt tcaccgaagg ctggacaaac aaaggaaatg
     1501 caacaggatt caatgaagac cagtatttca aagtattgga aaatggccag agaatggatg
     1561 atttaattac caaacacgca gcaattcttg atttgtacga tcctgcaaaa cgcgtaggtt
     1621 ttgttgttga cgaatgggga gtttggtata atgtggaacc aaatacgaat ccgggttttc
     1681 ttttccagca aaacaccctg cgtgatgcgc tacttgccgg cgaaatcctg aatattttcc
     1741 acaaacactg cgaccgcgta aaaatggcta acattgccca aatggtgaac gtattgcaag
     1801 ctattatttt taccgaaggt gataaaatgc tgcttactcc aacttactac gtatttgata
     1861 tgtacaaagt gcatcaggat gcaactatgc ttccaatgac agttaacagt cctgattata
     1921 ccagactaaa ccgtaatatg aaagccattt catcaacagc ttcggtagat aaaaatggtg
     1981 ctattcatgt aactttggta aatattgatc ctaagaatga cattgaagtt agttgcgatg
     2041 ttcgtggaac aaaaaccaca aaaatcactg acgggcaaat aattaccgga aaagaaaccg
     2101 gtactttcaa tacctacgac aatccttatc aggttcaatt ggaaaatttc aaagatgcta
     2161 aatacaaaaa tggcatgctg acagtaaaag ttcctgcaaa gtcgttgata actgtcgagt
     2221 tgaaataaaa taaaaattta aaacctcaat agaaacagta aaatttcttt gtttctattg
     2281 tggttttttc atcttcaaat gcagcccatg aaatcgattt cattcaaacc gacctatatt
     2341 ttcacaggat tatttattgt tctgtgcagc tttgcaacag cagcaacata tcttgtaaaa
     2401 tcgcccaatc catggaaaga tgattatcgc gatatttcgg ggttgaaaaa ttataagagt
     2461 tggggaactt acaacgtaca tgatccatcg tgtctgaaaa tcggagatac atattacatg
     2521 tacagcaccg atgctatttt ctttggcaga agaaaatcgg atgataaaaa gccggatata
     2581 aaaatcggaa atattcaggt gcgctcgtcc aaagaccttg tcaactggaa atttgaaggc
     2641 tgggcgtttg attccattcc cgcagaagcc aaagactggg tgctttcaca cagcgacaac
     2701 aaaggcgcta caaatatctg ggcaccatat attgttcaat acaaaaataa attccgcttg
     2761 tattattgtg tttcagcatt tggactgcaa acatcgtata tcgggttggc tgaatctgac
     2821 tcgccacttg gtccctggac gcaaaaagga gctgttgtgc gtacaaagcg tggcgacaac
     2881 atgaacgcca tcgatccgag cgttgttact gagcccgaaa caggcaaaat gtggatgcat
     2941 tatggttcgt attttggtgg gttatacgcc gttcagctaa atcccgaaac tggttttact
     3001 gccactttca gcgatcaggg acattttacg gctacacgcg ccaatatccg caaagacaat
     3061 attgaggcac ctgaaatcat ttacaatccg acatttaaaa agtactatct tttcacgtcg
     3121 tacgacccgc tgatgacaac ttacaacgtg cgtgtggggc gtgccgataa acctg
//
LOCUS       DATDNM010000222         2790 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1203582, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000222 DATDNM010000000
VERSION     DATDNM010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1203582"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..768
                     /locus_tag="VI413_03800"
     CDS             <1..768
                     /locus_tag="VI413_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004367621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system AbiEi family
                     antitoxin domain-containing protein"
                     /protein_id="HEY6913777.1"
                     /translation="MNIDQGNKLNQLLQNWHPGTLLFSTWLNKNGYSVQLMQQYRKSG
                     WFSLLSKGVLYRTGDRLSAYAALSGLKTQLNKSFYVGAHSALELFGFNHYVPMGKPIL
                     MVGHSKEDKVPKWMTETDFEFEMKFFITETFSNPQLTVMKKDNSELLTSVPEQAFLEC
                     LLLAPNQYNYMDLFYIMEQLTALRPEVVQLLLENTDNFKIKRLFLYMAEKAGHAWFGK
                     LDKSKIQLGVGKRQLTDKGVYVPEYMITVPKELFEYE"
     gene            761..1693
                     /locus_tag="VI413_03805"
     CDS             761..1693
                     /locus_tag="VI413_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009125778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="HEY6913778.1"
                     /translation="MNETYKKQVALLIRIMPLVYKIKDFAVHGGTAINLFIKDMPRYS
                     VDIDLTYLPVKNREESIKEINNHLNSLKQQIEKAIPGIRVIPKPTVLKLQCTFGGATV
                     KIEVNGIKRGIIGDVEEKELCEKAQKEFKMSCVARIVPFSLLYGGKIAAALGRQHPRD
                     LFDYKYMVVDSFEDLKNGLMFYLLGSDKPLLESLQPNPVDQQQALENQFKGMSDVPFE
                     YADFENARKELIEQVNQNFTYTDREFFLSFESGSPEWDKCCAGDLSGFPSIQWKLKNI
                     QNLKDTNSSKFNEGVEKLRKFLFESAEDIKQADK"
     gene            1734..2291
                     /locus_tag="VI413_03810"
     CDS             1734..2291
                     /locus_tag="VI413_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008781628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease"
                     /protein_id="HEY6913779.1"
                     /translation="MSYYVIDVESDGPILGVNSLVCFGAVRLDNELQTTFYGQTRPIG
                     EFYNEEALAISGFTREEHESFEDPKIVFEQFALWLSETNTNGKPILISDNNGYDASWI
                     NWYFHTFYGSNPFGYSSRRIGDLWSSFKNDMRASWKHMRTITFIDKDGREQKGCTHTH
                     NPVEDALGNAHALLYMINKGLKLRS"
     gene            complement(2486..>2790)
                     /locus_tag="VI413_03815"
     CDS             complement(2486..>2790)
                     /locus_tag="VI413_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018108752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEY6913780.1"
                     /translation="EKLLPILSNQKMNSYLKEIADACEINKELTFHIARHTFATTVTL
                     SNGVPIESASKMLGHKNLKTTQHYAKILDLKVSNDMQILKEKFGNGTQLKIEQSAG"
BASE COUNT          881 a          433 c          584 g          892 t
ORIGIN      
        1 atgaatatag atcaggggaa taaattaaac caactcctac aaaattggca tccaggaaca
       61 cttttatttt ctacatggct gaataagaat ggatattctg tccagttaat gcaacaatat
      121 cgtaaatcag gttggttttc attgctatcg aaaggggttt tgtacagaac cggcgatagg
      181 ctttcagctt atgctgcatt gtcagggtta aaaactcaat tgaataaaag cttttatgtt
      241 ggtgctcatt ctgccttaga gctatttgga ttcaatcatt atgttcctat ggggaagccc
      301 attttaatgg ttggacattc aaaagaagac aaagtcccca agtggatgac ggaaacagat
      361 tttgaatttg aaatgaaatt ctttataact gaaacgtttt ccaatcctca gttgaccgta
      421 atgaagaaag acaactctga gttgctaact tctgttccgg aacaagcctt tctcgaatgt
      481 ttgttattgg caccgaacca atataattat atggatctct tttatatcat ggaacagctc
      541 actgctttaa gaccagaagt ggttcagtta ttattagaga atacagataa cttcaagata
      601 aaacgattat tcctatatat ggcagagaaa gccggccatg catggtttgg caagttagat
      661 aaaagtaaaa tacagttagg tgtcgggaaa cgacagttga cagacaaagg cgtttacgtg
      721 ccagaatata tgataactgt cccaaaagag ttgtttgaat atgaatgaga cttataaaaa
      781 gcaggtggca ctattaatcc ggattatgcc attggtttat aaaataaaag attttgcagt
      841 acatgggggt acggctatca atttgtttat aaaggacatg ccccgatatt ctgtagatat
      901 tgatttgact tatcttccag ttaaaaacag agaggagagt ataaaagaaa tcaataatca
      961 tctgaattca ttaaaacagc agattgaaaa ggctattccc ggaattcgtg ttatccccaa
     1021 accaacagta ttgaaattgc aatgtacttt tggcggagca actgtaaaaa ttgaggttaa
     1081 tggtatcaag cggggtatca ttggagacgt tgaagaaaag gaactttgcg agaaggctca
     1141 gaaggaattt aaaatgagtt gtgtagccag aatagttcct ttctcgttgt tatatggtgg
     1201 taaaattgca gcggctttag gccgtcagca cccacgtgat ctttttgatt ataaatacat
     1261 ggttgttgat tcttttgagg acctaaagaa tggtttgatg ttttatttgt tgggaagcga
     1321 taagcctctt cttgagtctt tgcaacctaa tcctgttgat cagcaacaag ctcttgaaaa
     1381 tcaatttaag ggaatgtcgg atgtgccttt tgagtatgcc gatttcgaga atgcccggaa
     1441 agaattaatt gaacaagtca atcaaaactt tacatatacg gatagggaat tttttctttc
     1501 tttcgaaagt ggtagtcctg aatgggataa atgttgtgct ggtgatttaa gcggtttccc
     1561 atccatacaa tggaagttaa aaaatatcca gaatttgaag gatacaaatt cttctaagtt
     1621 taatgaagga gttgagaaac tgaggaagtt tctttttgag agcgctgagg atataaagca
     1681 ggctgataaa taaattataa aggtattgtc aatcgaacta caattatact gaaatgagct
     1741 actatgtaat agatgttgaa tcggatggac caattttagg tgtgaattca ttggtttgtt
     1801 ttggtgctgt tcggttggat aatgaactgc aaacaacttt ttacgggcaa acacgtccga
     1861 ttggcgagtt ttataacgaa gaagcacttg ccatcagcgg ttttaccaga gaagaacatg
     1921 agtctttcga agatccgaaa attgtttttg agcaattcgc tttatggctg tctgaaacaa
     1981 acactaacgg gaaacctatt ttgatctcgg ataataacgg atatgatgcc tcatggatta
     2041 actggtattt tcatacgttt tatggaagta atccttttgg atatagttcc aggcgaatag
     2101 gtgatttatg gtcaagcttt aaaaatgata tgcgcgcatc ctggaaacac atgagaacta
     2161 taacttttat agataaagat ggccgagaac aaaaaggttg cacgcataca cataatccag
     2221 tagaagatgc attgggtaat gctcatgcac ttctctatat gattaacaaa gggcttaaat
     2281 tgagatctta atttaggctc aatataagag gttgaccagg ggaatttgtg ttcagctagt
     2341 ttttatagta ctatagatat atctataata ttggtctgtt ttggctaaaa atatagatat
     2401 atctatactt gaaaagagga ttcagatata aaaacctgaa tcctctttta gtgtgtttta
     2461 acctgatttt tgttgacctt ttaaatcaac ctgcagattg ctcgattttc agttgtgttc
     2521 catttccaaa cttttccttc aaaatctgca tatcgttact tactttcaaa tccagtattt
     2581 tggcataatg ttgagttgtt ttgaggtttt tatgcccgag cattttagag gcgctttcga
     2641 tcgggacacc gtttgaaagc gtaacggtgg tggcaaaagt atgtctggca atgtggaatg
     2701 tcagctcttt attgatttca caagcatcag ctatttcctt caggtaagaa ttcatcttct
     2761 gattactcag aataggcaaa agtttttctt
//
LOCUS       DATDNM010000223         3203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1843842, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000223 DATDNM010000000
VERSION     DATDNM010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1843842"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..944)
                     /gene="vorB"
                     /locus_tag="VI413_03820"
     CDS             complement(<1..944)
                     /gene="vorB"
                     /locus_tag="VI413_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007484986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate dehydrogenase subunit
                     VorB"
                     /protein_id="HEY6913781.1"
                     /translation="MSDSKKHNTEEVKLMKGNDAIAHAAVRCGCDGYFGYPITPQSEI
                     METLMELEPWNSTGMVVLQAESETSSINMVYGAAGCGKKSMTSSSSPGVSLMQEGISY
                     IAAGELPCLIVNVMRGGPGLGTIQPSQADYFQAVKGGGHGDYKLITLAPGSVQEMADH
                     TVLAFELAFKYRTPAMILADGIIGQMMEKVVLPPFQPRMTEKEIAEKCPWATLGKPVT
                     RKPNIITTLSLDAQEMEETNLRLQAKYREIEKNEVLYEEFLCDDAEYLVVGFGTCARV
                     SQKAVEMARAEGIKVGLLRPITLFPFPTIAISNYADKV"
     gene            complement(976..1200)
                     /locus_tag="VI413_03825"
     CDS             complement(976..1200)
                     /locus_tag="VI413_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007653280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY6913782.1"
                     /translation="MAKVKGAVVVNEERCKGCNLCVVACPSDVLILNKEANSKGYNFS
                     TMANPDDCVGCAACAYVCPDACITVYKVRV"
     gene            complement(1552..2025)
                     /locus_tag="VI413_03830"
     CDS             complement(1552..2025)
                     /locus_tag="VI413_03830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009121778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEY6913783.1"
                     /translation="MPQEIERKFLVTGEYKQLASKSYRIAQGYLSTASGRTVRIRIKG
                     NKGYITIKGKRSESGLSRYEWEKEIPVNEAQELLALCKPTIIDKTRYEVIFEGQTFEV
                     DEFYGENEGLTVAELELESEDTSYSKPEWLGEEVTQEKCYNNSFLSKYPFTKWKQ"
     gene            complement(2089..>3203)
                     /locus_tag="VI413_03835"
     CDS             complement(2089..>3203)
                     /locus_tag="VI413_03835"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEY6913784.1"
                     /translation="LIHRAKRIFFLYDSRTEGMQTGEVSRFMHQLYYHYGVEAKKKSI
                     SFDIGFDNAQAIQVEKTPAVMKKLLRFTSTEEYSPSLSASSINSYIDCPLQFYLTKVE
                     VVEQAEEVVETVEANMFGSLFHKVMENLYLPYKGHMIQADDFDLLIKNTLKIDNEIYS
                     AFNTEYFKRKTGAFIPLEGNNLLIASVLRKYILQVLKVDKKHAPFRYISSEERCSIQY
                     PIQSGELNVNLKGFIDRIDEKEGHLRILDYKTGTGKLDFKNLDEVFEHNKENRPKFVL
                     QTFLYGIFYKEQAEGKTITPGIYYIRDVFKDEFDTELNDKELKEKVTDFGTYEDDFRL
                     HLTDCLEEIFNSQIPFAQTENVKICQFCPYIGVCNR"
BASE COUNT          878 a          667 c          565 g         1093 t
ORIGIN      
        1 tttactttgt cggcataatt actgatagca attgtgggga atgggaaaag tgtaatagga
       61 cgcaataaac caactttaat accttctgca cgagccattt ctactgcttt ctggcttacg
      121 cgagcgcatg ttccaaatcc aaccaccaaa tattcagcat catcgcatag aaattcttcg
      181 taaagaactt cattcttttc tatttcgcgg tattttgctt gtaatcgaag attggtctct
      241 tccatttcct gagcatctaa tgataacgtg gtgataatat tgggtttgcg tgttaccggc
      301 tttcctaatg ttgcccacgg acatttttcg gctatttctt tttcggtcat acgtggttgg
      361 aaaggtggaa gtactacttt ttccatcatt tggccaataa ttccgtcggc cagaatcata
      421 gcaggagtac gatacttaaa agccagttca aaagccaaaa cagtatggtc agccatttcc
      481 tgaacagaac caggggcaag tgtaattaat ttataatcac catgtccacc acctttaact
      541 gcctgaaaat aatcggcctg gcttggctgg attgttccga gtccgggacc gccacgcata
      601 acatttacga ttaaacaagg tagttcgccg gcagcaatat aggaaattcc ttcctgcata
      661 aggcttacac cggggcttga cgaactggtc atggattttt taccacaacc ggctgctcca
      721 taaaccatat tgattgacga tgtttcactt tctgcctgca acacaaccat accggtgcta
      781 ttccaaggtt caagttccat cagggtttcc atgatttcag attggggtgt aatcggataa
      841 ccgaaataac catcgcaacc acaacgtact gctgcatggg caattgcgtc attgcccttc
      901 attaatttta cttcttctgt attgtgtttt tttgaatcgc tcattttttt tagttttaaa
      961 tcgtaagaca ttctattaaa ctcttacttt ataaacagtt atacatgcat ccgggcaaac
     1021 atacgcgcag gctgcacatc ccacacaatc atccggattg gccatcgtgc tgaaattgta
     1081 tcctttcgaa tttgcttctt tgttgagaat taaaacgtct gatggacatg caactacaca
     1141 taaattgcat cctttgcaac gctcttcatt aactactaca gctcctttaa cttttgccat
     1201 tatattctaa tttaaaattg acgcccaaaa gtaattaaaa ttgaagtaaa acaatattct
     1261 ttttgccctt tttcggaaaa tatttagctc acttttaatg ttgaatcact ttggcgtttt
     1321 aaataactta tttatgtttt ttaagatact ttgattacta tattccaatt gcaaagtaac
     1381 tacctttcta taccaacttc caaacaaacg gggcaattag ccggataatt gggatgaaac
     1441 gctactattt gggataaaaa tcgcaataaa gggataaaaa tcgctgaaat aagccggcat
     1501 atatttgaga atattaccct cactgaacgt ttttttgctg taaatagttg gctactgttt
     1561 ccattttgta aatggatatt tacttaaaaa tgaattgttg tagcattttt cttgtgttac
     1621 ttcttctccc aaccattctg gttttgaata gcttgtgtct tccgattcca gctccagttc
     1681 agcaacagtt aaaccttcgt tttcgccata aaattcatct acttcaaaag tttggccttc
     1741 aaatatcact tcgtagcgcg ttttgtcaat tattgttggt ttgcaaagtg caagaagctc
     1801 ttgggcttcg ttcacaggaa tttctttctc ccattcgtac ctgctcaaac ccgattcgct
     1861 tctttttcct ttgatggtta tatagccttt gttgcctttt atgcgtatac gtaccgttct
     1921 tcccgatgcg gtggataagt atccctgggc tatgcgatag cttttagatg caagttgttt
     1981 atattcgcct gtgacgagga attttctttc aatttcttgg ggcataattt gctgttttat
     2041 cacttttcca aagtttcaaa ctttggaaaa gtttgatggt aatttaatct atcggttaca
     2101 aacaccaata tacgggcaaa attgacatat ttttacgttc tcagtttgtg caaaaggaat
     2161 ttgggaatta aatatttcct ctaaacaatc agtcaaatgt aatctgaaat catcttcata
     2221 cgttccaaag tcagtaactt tttcttttaa ttctttgtcg ttcagttcag tgtcaaactc
     2281 atctttaaac acatccctga tataataaat acctggtgta atagtctttc cttctgcttg
     2341 ttctttatag aatatgccgt acaaaaaggt ttgcagcaca aatttaggac ggttttcttt
     2401 gttatgttca aatacttcat caagattttt aaaatccagt ttgccggttc cagttttata
     2461 atcgaggata cgcaaatgcc cttctttttc gtcaatacgg tcgataaatc ccttcagatt
     2521 tacgtttagc tctccacttt gaatcggata ttgaatgctg caacgctctt cggaacttat
     2581 ataacggaaa ggggcgtgtt ttttatctac cttcaatacc tgtaaaatgt acttccgcag
     2641 aacgctggca attaataaat tgtttccttc gagcggaata aatgcgccgg tttttcgttt
     2701 gaaatactca gtgttgaaag cactatatat ctcattgtca attttcaatg tgtttttaat
     2761 aagcaggtca aaatcgtcgg cttgtatcat gtggcctttg taaggcaaat acaagttttc
     2821 catgacttta tgaaacaagc tcccaaacat gttggcttcc accgtttcca ccacttcttc
     2881 agcttgttcc acgacttcca ctttagtcag gtaaaattgc aacgggcaat ctatatagct
     2941 atttatggaa ctggccgaaa gcgacggact gtactcttct gtagaagtga accggagtag
     3001 ttttttcatt acagccggtg ttttttctac ttggatggct tgcgcattat caaaaccaat
     3061 atcaaacgag atacttttct ttttggcttc tactccgtag tggtaataca actgatgcat
     3121 aaaacggcta acctcaccgg tctgcatgcc ttcggtacgc gaatcgtaga ggaagaaaat
     3181 acgtttagcc ctgtgaatca acc
//
LOCUS       DATDNM010000224         5046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_775790, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000224 DATDNM010000000
VERSION     DATDNM010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5046
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_775790"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1484
                     /locus_tag="VI413_03840"
     CDS             <1..1484
                     /locus_tag="VI413_03840"
                     /inference="COORDINATES: protein motif:HMM:NF040057.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="putative LPS assembly protein LptD"
                     /protein_id="HEY6913785.1"
                     /translation="SRIYPLKRKNAIGKERWYEKISMSYSGTLANSINTKENKLLTSS
                     FSRDWKNGMRHSIPVSATFNILKYINVSPSANYNERWYMQSYNQSWDATNKRIKNDTV
                     SGFKRVYDFNMGVSASTKLYGFYIPIRALFGDKVDRIRHVVTPSFGFSYMPDFGDPMW
                     GYYGTYIKQVADSKDPTIFHDETVEYSHYTGSLYGAPGKGKSGSLNFSLGNNVEMKVR
                     NDKDTTGTAPFKKVSLIDNFTVSGSYNLAADSMRWSILNANLRIKLGKSYSLSLSGGF
                     DPYMNTLVGTRLVRVNKLRWENGRFPRFLGTSTSYSYTLSNDTFKKLFDKSKSNKNKS
                     DKTTEPGAEPTTDTGQTTEKQSGDKKKTDIGVDGYEKVTIPWSISINYSIRYGNTQEI
                     DYKREEYKMAFTHNLSFSGNLSLTTNWKFSTSTTYDFKSKEFTYTNLNITRSLHCWQM
                     TASVVPFGIYKSYTFRLGVNASMLADLKYDKQSGYGTTNVNWY"
     gene            1601..2206
                     /locus_tag="VI413_03845"
     CDS             1601..2206
                     /locus_tag="VI413_03845"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEY6913786.1"
                     /translation="MKITANKAVSAEYELFVDGETEGELELMEKATAEQPLSFVYGVG
                     MMLPKFEENLFGMQVGDKFDFVINTEDAYGEYDDDSVLDLDRAIFEIDGKIDEEVIFE
                     GNVVPLMDNEGNRINAQVVTITDSHVKVDLNHPLAGENLHFKGSVLEVREASEKELAA
                     LMGGGGCGGGCGCGDGGCGDGSCGTGDEDDMGGCGSGCGCH"
     gene            2377..3441
                     /gene="aroC"
                     /locus_tag="VI413_03850"
     CDS             2377..3441
                     /gene="aroC"
                     /locus_tag="VI413_03850"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEY6913787.1"
                     /translation="MSNTIGKLFTFTSFGESHGKGIGGIVDGCPSGIEIDEEFIQNEL
                     NRRRPGQSAISTPRKEGDKVEFLSGIFEGKTTGTPIAFVIWNENQHSSDYDHLKEVYR
                     PSHADYTYQQKYGIRDHRGGGRSSARETASRVVAGAIAKLALKKQGIDITAFTSQVGH
                     IAMSGNFETADLSLIESNVVRCPETETAEKMIEYIKQLKAEGDSIGGIISCIIKGVPV
                     GLGEPIFDKLQARLAQAMLSINATHGFDYGRGFEGVSMKGSQMNDPFVKEGDKITTKT
                     NNSGGVQGGISNGQDIYFRVLFKPVATISKKQDTLDIHSNEVELEARGRHDPCVLPRA
                     VPIVEAMAALTLIDLWLTKN"
     gene            3546..4493
                     /locus_tag="VI413_03855"
     CDS             3546..4493
                     /locus_tag="VI413_03855"
                     /inference="COORDINATES: protein motif:HMM:TIGR00147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEY6913788.1"
                     /translation="MEVTPQHWAVIINPKSGKKKFRQQRKYLFLALKHAGIQFDYRIT
                     KFAGHAIKIARYFAEKQYKNFLILGGDGTMSEVINGIFSADIEDTSSLRFALIPRGTG
                     NDWARFWGLTADYKKSIHVFLQGNIQPIDIGKVEYEMEGTKESHFFINSVGLGLDAAV
                     VNLTHRLKEIFGSHSFMYTVALLGAVFTYKAHKVRIFSEEKNINDSMFTMNIANGCYS
                     GGGMKQNPNALPYDGLMDVMIAKKPTFFDIISALMRIFNGKLLEHPVIESFQTKSLLV
                     QCDKNALMEADGIIVNGASPFTISIIPNAIQMIVPSPNP"
     gene            complement(4561..>5046)
                     /locus_tag="VI413_03860"
     CDS             complement(4561..>5046)
                     /locus_tag="VI413_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY6913789.1"
                     /translation="KAAWFFDDGKPFLVHNVDILSNVDLKELYHQHIRTNSLATLVVS
                     HRDTFRYLLFDDSLRLNGWINEKIGETKPVGLKKIESYNKLAFSGIQVLSPQVFDLME
                     NLAPKFPIMDFYLSNTSTQTISGFIPQNYNMLDVGKLNVLDEAERFVTNTPLTPKGEL
                     L"
BASE COUNT         1661 a          896 c         1069 g         1420 t
ORIGIN      
        1 tgagccgtat ttatccactt aaaagaaaaa atgcaattgg aaaagagcgt tggtatgaaa
       61 aaatttctat gtcatactca ggaactctcg caaacagtat taatactaaa gaaaacaaat
      121 tgctgacttc ttctttttct cgtgactgga aaaacggaat gagacacagc attcctgtaa
      181 gtgcaacttt caatatattg aaatatataa acgtttcacc atctgcgaat tacaatgagc
      241 gttggtatat gcaatcatat aatcaatcgt gggatgcaac gaataaaaga ataaaaaacg
      301 atactgtttc aggctttaag cgtgtttacg acttcaatat gggagtttcg gcatcaacaa
      361 agctttacgg attctacatt cctattcgtg cattattcgg agataaagtt gaccgaatca
      421 gacacgttgt aactccttca tttggtttta gttacatgcc cgactttgga gatccaatgt
      481 ggggatatta cggaacttat ataaaacagg ttgctgacag taaagatcca actatttttc
      541 atgatgaaac agttgaatac tctcattata caggaagttt gtatggagct ccgggcaaag
      601 gaaagtcagg aagtttgaat ttctcactcg ggaataatgt ggaaatgaaa gtacgtaacg
      661 acaaagatac aactggcact gcacctttta agaaggtcag cctgattgat aactttacag
      721 tgagcggttc gtataatttg gctgccgatt caatgcgttg gtctattctg aacgccaatt
      781 tgagaataaa attaggaaaa agttacagct taagccttag cggcggattc gatccataca
      841 tgaatactct tgtcggtacc agactggttc gggtaaacaa acttcgttgg gagaacggta
      901 gatttccgcg tttcctggga acaagcacct catatagcta tacgctaagc aatgatacat
      961 ttaagaaact gttcgataaa agcaaaagca ataaaaacaa atcggataaa acaactgagc
     1021 ccggtgctga gcctacaacg gatactggcc aaacaacaga aaaacagtcg ggggataaga
     1081 aaaaaactga tattggagta gatggttacg agaaagtgac aataccttgg agtattagta
     1141 taaattattc tatacgttat ggaaataccc aagagattga ttataaaaga gaagaatata
     1201 agatggcttt tacccataac ttaagctttt ctggtaatct atctttgaca actaactgga
     1261 aattcagcac cagtactacg tatgatttta aaagcaagga atttacctat acaaatttaa
     1321 atataacacg tagtttacat tgctggcaaa tgaccgcttc tgttgtacca tttggtattt
     1381 ataagtcata tacattccgg ttaggtgtaa atgcaagcat gctggcagat ttaaagtatg
     1441 acaaacaaag tggctacggt acaacaaatg tgaactggta ttaaaaggat tgcacaaaac
     1501 acaattaaca atcaaggttg aacaatttga cctgaaaaac aattatagag ggattagaat
     1561 aaaaaaaatt gcaatataaa tttttaaact aaataaaaaa atgaaaatta cagcaaacaa
     1621 agctgtttca gccgagtacg aattattcgt tgatggtgaa actgaaggag aattagaatt
     1681 gatggaaaaa gccaccgcgg agcaaccatt aagttttgtg tacggcgtag gcatgatgtt
     1741 gcccaaattt gaagaaaatt tattcggcat gcaagttggt gataaatttg attttgtcat
     1801 taacacagaa gatgcttacg gtgaatatga tgatgatagc gtacttgatc ttgatcgcgc
     1861 tatttttgaa atcgatggga aaatcgatga agaagttatt tttgaaggaa atgttgttcc
     1921 attaatggac aatgaaggca atcgcattaa cgcacaggtt gtaactatca cagacagtca
     1981 tgttaaagtg gatttaaatc acccacttgc aggtgaaaat cttcacttta aaggatctgt
     2041 acttgaagtt cgcgaagcat ctgaaaaaga actggcagct ctaatgggcg gcggcggatg
     2101 tggcggtggc tgcggatgtg gcgacggtgg atgtggtgac ggaagctgcg gtaccggcga
     2161 tgaagatgac atgggtggct gtggaagcgg ttgtggttgt cattaataga ctagtcatat
     2221 tttcaatata ttttcagtgg atattgagtg gtattacacc attcaatatc cattgttgta
     2281 tgtaattggt tttatgggtt tatcattatc ccaaactttt gaataacttt gtacttcgtt
     2341 ttttaaacga aattttaaat atataattaa agacttatgt cgaacacaat aggtaaatta
     2401 tttactttta cttcatttgg agaatcacac ggtaaaggaa ttggtggaat tgttgatggt
     2461 tgtccatcag gaattgagat tgacgaagaa ttcattcaaa atgaactgaa tcgacgccgc
     2521 ccgggtcaat cagctatttc cacaccgcga aaagaaggag ataaagttga atttctatcc
     2581 ggaattttcg aaggcaaaac tacaggaaca cccatcgcat ttgtcatttg gaatgagaac
     2641 caacacagtt cggattacga ccatttgaaa gaagtgtaca gaccttcgca tgccgattat
     2701 acataccaac agaaatacgg aatccgcgac catcgtggtg gagggcgcag ttcggcccgt
     2761 gagactgcgt cgcgcgttgt ggccggtgct atcgcgaaac tggctttaaa aaagcaagga
     2821 attgacatca ctgctttcac atctcaggtt ggccacattg ccatgtccgg aaattttgaa
     2881 acggctgatc tatcgctgat tgaaagcaat gttgtgcgtt gcccggaaac ggaaaccgca
     2941 gaaaaaatga tcgaatatat caaacagcta aaagctgaag gcgattcaat tggcggtatt
     3001 atatcctgta ttattaaagg tgtgccggtt ggactgggcg aacccatttt tgataaactt
     3061 caagcccggt tagcacaagc catgttgagc attaacgcaa cacacggatt tgattacgga
     3121 cgtggatttg aaggcgtaag tatgaaaggt tcgcaaatga acgatccatt tgtaaaagag
     3181 ggtgataaaa taactacaaa aacgaataat tccggtggcg tccagggtgg aataagcaac
     3241 gggcaagata tttacttccg ggttttattc aaaccggttg caacaatttc gaaaaaacag
     3301 gacacacttg acattcattc aaacgaagtg gaactggaag cccgaggccg acacgatcct
     3361 tgtgttttac cacgtgcagt gcctattgtt gaagcaatgg cagcattaac gctgattgat
     3421 ttgtggttga caaaaaatta aaaaaaaaga acccctagcc cctaaagggg aactggagtt
     3481 agctttttaa ataaaaggat taaatactca atttttaagc ccctttatgg gtttggggtc
     3541 aaattatgga agtcacaccg caacattggg cagttataat taatccaaaa tccggcaaga
     3601 agaaatttcg tcaacaacgt aaatatcttt ttctggcact caaacatgcc ggtattcaat
     3661 tcgattaccg gattactaaa tttgcagggc acgccataaa aatcgccaga tactttgccg
     3721 aaaaacaata caaaaacttt ctaattttag gcggtgatgg tactatgagc gaagtgatta
     3781 atggtatttt cagcgctgat attgaagaca ccagttcttt gagatttgca cttataccac
     3841 gcggaaccgg aaatgactgg gcacgatttt gggggcttac tgcagattac aaaaaatcga
     3901 ttcatgtttt tctgcaaggc aatatacaac ctatcgatat tggaaaagtg gaatacgaaa
     3961 tggagggaac gaaagaatcg cattttttca ttaactctgt tggactgggg ctcgatgctg
     4021 cagtggtaaa cctaacccat cgcctgaaag aaattttcgg aagccattcg tttatgtaca
     4081 ctgtggcttt gctgggagct gtttttactt acaaagctca taaagtcagg attttttcgg
     4141 aggaaaagaa tattaacgat agcatgttta ccatgaatat cgccaatggc tgttacagtg
     4201 gaggtggtat gaaacaaaac ccgaatgctt tgccttatga cggtttgatg gacgtgatga
     4261 tagcaaaaaa accaaccttt tttgatatta tcagcgcttt gatgcggatt ttcaatggca
     4321 aattactcga acatcctgtc attgaatctt ttcaaacaaa aagcctgttg gtacaatgcg
     4381 ataaaaatgc actcatggaa gctgacggaa tcattgtcaa tggagcttct ccgtttacaa
     4441 tcagcatcat tccaaatgca attcaaatga tagtacctag ccctaacccc taaaggggaa
     4501 ttgagctact ttcatctata attatcctct atattaaatt tatagtttta ggagacaaaa
     4561 ctataataat tcccctttag gggttagggg cgtattcgtc acaaaccttt ctgcttcatc
     4621 cagcacattc aacttcccta catccaacat gttgtagttt tgaggaataa aaccactaat
     4681 cgtttgtgtt gaagtgttcg acaagtaaaa atccatgatt ggaaacttgg gcgcgagatt
     4741 ttccatcaaa tcaaaaacct gtggagaaag aacctgaatg cctgaaaaag ccagtttatt
     4801 gtacgattct attttcttca gacctacagg ttttgtttcg cctattttct cgttaatcca
     4861 accattcagt cgcaggctat catcaaagag aagataacgg aacgtatcgc ggtggctgac
     4921 aaccaacgta gccaaactat tggtacgtat gtgttggtga tataattcct ttaaatcaac
     4981 attcgaaagg atatctacat tatgcaccag aaaaggtttt ccatcgtcga agaaccaagc
     5041 tgcttt
//
LOCUS       DATDNM010000225         2987 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1203845, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000225 DATDNM010000000
VERSION     DATDNM010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2987
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1203845"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..686
                     /gene="rsgA"
                     /locus_tag="VI413_03865"
     CDS             <1..686
                     /gene="rsgA"
                     /locus_tag="VI413_03865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020046538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEY6913790.1"
                     /translation="RLERYLTICNSSKVSPIIVLTKIDLIDEHRTFEILEKIKARINN
                     VPIIAISNESQDGYGKIKAIIEKGKTYCMLGSSGVGKSTLLNNLSGKSIMKTDTISQS
                     TNKGKHITSHRELIILENGGIIVDNPGMREVGIADSASGLEITFDVITRLSQNCKFKD
                     CTHTNEIGCSVIEAIEKGEIDQALYENYLKLEREKAHFESTVVERRKKDKQFGKMVKN
                     YKKDISRGK"
     gene            complement(1491..1865)
                     /locus_tag="VI413_03870"
     CDS             complement(1491..1865)
                     /locus_tag="VI413_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913791.1"
                     /translation="MKKHSVAFLITFLLGLSSSFVFSQTATSDLKYGKYGCTSSQYVN
                     GFYEYTPRGSFVLYKNGTYAYLGFKKPSTGKFTIDKNGNLLFSGGYFDKGKAEKIDRP
                     NKFFLVFPTIPGSRWTCTYTEK"
     gene            complement(2141..2503)
                     /gene="hypA"
                     /locus_tag="VI413_03875"
     CDS             complement(2141..2503)
                     /gene="hypA"
                     /locus_tag="VI413_03875"
                     /inference="COORDINATES: protein motif:HMM:TIGR00100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008901 - ferredoxin hydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEY6913792.1"
                     /translation="MHELSVAQSILSIAENAAPKTTNTTITSIHLQIGELSGIELEPL
                     KFAFSVIKKDTILEHAELDIELIRGEAYCPQCKSEFHMHYYGASCPNCGNYFIHVSKG
                     REMRVVNLVVDEHEDAVC"
     gene            complement(2596..>2987)
                     /locus_tag="VI413_03880"
     CDS             complement(2596..>2987)
                     /locus_tag="VI413_03880"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY6913793.1"
                     /translation="KTFIPDDYRGLIGFKEEACIWCRRCEMACPPGAIIFSQAMDGKQ
                     TYHYNRAVCIFCEECIRSCPKAEEGALFNTHIPADCALKEENINNGWAVVCSDALKSR
                     EAFAAEKKRLAAEKAAAAKKVNTENTN"
BASE COUNT          947 a          549 c          633 g          858 t
ORIGIN      
        1 atagacttga aagatacctg accatttgta attcatcaaa agttagtccc attatagtgc
       61 tcactaagat tgatttaatt gatgaacatc ggacttttga gatattggag aaaataaaag
      121 ctcgaatcaa taatgttccg attattgcaa taagtaacga atcacaagat gggtacggta
      181 aaataaaagc gattattgaa aaaggtaaaa catattgcat gcttggttct tccggtgtcg
      241 gaaaatccac tcttttgaat aatctatccg gcaaatcaat aatgaaaaca gatacaatta
      301 gccagagtac aaataaaggg aaacacatta caagtcacag agaattaatt atccttgaaa
      361 atggtggaat aatagttgat aatccgggaa tgagagaagt gggtattgcc gattcagcaa
      421 gtggattaga aattacattt gatgtgatca ccaggctttc tcagaattgt aaattcaaag
      481 attgtactca cacgaatgaa ataggttgct ctgttatcga agccattgaa aagggagaaa
      541 tagaccaagc tttgtatgaa aattacctga aattagaaag agagaaagct cattttgaat
      601 ctacggttgt tgaaagacga aaaaaagata aacaattcgg aaaaatggta aagaactaca
      661 aaaaggacat cagtagggga aaatgaaatt ctaagaaaat aagcccgaac tgccaccgtc
      721 ggtttgcaat acgataggtg actagtttct atgaagcatt cgtgcagagt tcatcgttag
      781 attctattcg acgtttgtgc taaacatccg ccacatcgcc aagtcaaaat aggttgtata
      841 caagtataat gagaaaagta ttagtcatag ggataatcgc tacgatccta ttctcctgta
      901 aaaaagataa gagctaattg agattttctg aaataaatta ctcgaagggg aaaactaaga
      961 ttcattgaca cagcttcggt attacaaaca ttggttcaaa accggtacca cagagaattt
     1021 cgtgagctag ggggacttta cgggaatacg ggcgtttgcg cagaacaatt tgaggttaca
     1081 taccgttcac acaatagcga caacttagac ttatatgcag aggtggacgc attgaaccgc
     1141 tctttgtctt tagagattgc atcctattgg aatcacattg caataagtcc cgacccctgc
     1201 agcctacgat ttcttccttg actggtaatg gcaaaacata taacgatgtc tatttgcgga
     1261 aaatgtacag cacgctcaaa atataaacaa caacgagacg gcaacattat ttcacaataa
     1321 gcagtatgag taattcaatt agtattccca aatggaaaga ggattatatg tattgacttg
     1381 taggatacaa taattggttt gctaattgct tttcttaaag ggcttcatgc catactataa
     1441 actggcttgg gggcgatagg aattgaaaaa tatgcccctt gttatccttg ctatttttca
     1501 gtataagtac atgtccacct ggaaccaggt attgttggaa agactagaaa gaatttattc
     1561 ggcctgtcaa ttttttcagc tttcccctta tcaaaataac ctcctgagaa aagaagattg
     1621 ccatttttat cgatagtaaa tttcccagta cttggttttt taaagcccag gtatgcatag
     1681 gtcccatttt tatataaaac aaacgatccg cgcggcgtat actcgtaaaa gccatttaca
     1741 tactgacttg atgtacagcc atatttaccg tacttaagat ccgacgttgc tgtttggcta
     1801 aatacaaagg aagaagataa acctagtaag aaggtgatta aaaatgctac tgagtgtttt
     1861 ttcacgttgg ttgatttaga ttattttttt gaataataaa aatacttgct accacaatat
     1921 agagaaaata tatttttcaa atatgctatt agaatttaag catagcgtgg atgagccctg
     1981 ccaaaaaaaa tgggtcagaa gtacagccgc tcccggcttt tgttgtaacg gtgaaagcgc
     2041 agggacagta aatttcggcc tgtgccgttt aattgagtta cctggtgaaa tacaaaacga
     2101 atgagtttgc acctaaacca cttaggtacc gtgaaaattg ctagcaaacg gcatcttcgt
     2161 gctcgtcaac gacaaggttc acgaccctca tttcccggcc cttggagaca tggatgaagt
     2221 agttgccaca gttgggacag gaagcgccgt agtagtgcat gtgaaactcg gatttgcatt
     2281 gcgggcagta ggcttctccc ctgatcaact cgatatccag ttctgcgtgt tcgagtatgg
     2341 tatctttctt aatgacggag aaggcaaatt tgaggggttc taactcgatg ccactgagct
     2401 caccaatttg gagatgtata ctggtaatag tggtgtttgt cgttttaggc gcagcatttt
     2461 ctgctatcga cagaatggat tgcgcaacag atagttcgtg catatgtgtt tcttttggtg
     2521 gttaaataat gttattacac gaattgggaa aaacgaatta cacgaattgg gtcgttgtaa
     2581 ttcgtgaacg tcgcactaat tcgtgttctc tgtgtttact ttctttgcgg cagcagcttt
     2641 ttcggcagcc agccttttct tttcagcagc aaaggcttca cggctcttaa gcgcatcgct
     2701 gcagactacc gcccagccat tgttgatgtt ttcttctttc aaggcacaat cggcaggaat
     2761 gtgtgtatta aacaaggcac cttcctctgc ttttggacag gaacggatgc actcctcgca
     2821 gaatatgcaa acggccctat tgtagtgata ggtttgtttg ccatccattg cctgcgaaaa
     2881 gattatagca ccgggaggac aagccatttc gcaacggcgg caccatatac aggcttcttc
     2941 tttgaaaccg atcaggccac gataatcatc gggaatgaaa gtctttt
//
LOCUS       DATDNM010000226         2606 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1630229, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000226 DATDNM010000000
VERSION     DATDNM010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1630229"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..763
                     /locus_tag="VI413_03885"
     CDS             <1..763
                     /locus_tag="VI413_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY6913794.1"
                     /translation="SSLYVRSNTGNRIQLDNLVDIKENSNPPILYHFNRYKSATVSAN
                     LAEGKTLGEGIKEMQLIADKLLDESFTTALNGPSRDFAESNSNISFALILALLLIYLI
                     LAAQFESFRDPFIIMLTVPMAIAGAMLSLWIFGQTLNIFSEIGMILLIGIVTKNGILI
                     VEFANQKRKLGMNKRVAAFEAAAARFRPILMTSLATIFGALPIALALGAGSTSRIPLG
                     IVVVGGLFFSLLLTLFVIPVTYIVMSSKTKKIVSP"
     gene            760..2073
                     /locus_tag="VI413_03890"
     CDS             760..2073
                     /locus_tag="VI413_03890"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY6913795.1"
                     /translation="MIHQQIKIIRGIVALLVLNVSVSSAQSKLTINDAMSISLKNNFD
                     ILVAGNEASIAKVNNTPGNAGMLPTLDLTGSGSLEQNNVSQKLSSGTENNYQALRSSS
                     LRAGVQLNWNLFDGGKMFVTKSKLNEIQALGEIQFKDKVLQTLFNVTAAYYDIVRQKQ
                     QLNSINEALNMNRERVTIAQAGYNAGSLLKSDLLQAKIDLNVNTENAINQQFTIDAAL
                     KTLTLLLGGKTDEKFEITDSIPLNYSPDKAGLLDKINNSNTSILSFQKQIDIAQLALK
                     ESRSSYLPTLSFKAGYYVSQSANSAGSVLKNNSIGPQVGGTLVVPIYNAGEIKRKEKT
                     AKIQAQSAQYDLENIKLQISIELQNTLVEFENQQELLKIETENNELAKENIQISIDRL
                     KHGQTTSLEVRQAQEDYVQSCTRLINFRYNLKMAETKLKQLVSEL"
     gene            complement(2150..2596)
                     /locus_tag="VI413_03895"
     CDS             complement(2150..2596)
                     /locus_tag="VI413_03895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEY6913796.1"
                     /translation="MKKFKFTIEGTSYSVNVKSVEGNQAEIEVNGKSYSVGLEEELNP
                     LKTPILVRKEVVTKPGENKIATKAAPMPPSNKPSANGIKAPLPGSIIRVAVKVGDTVK
                     EGDLLLVMESMKMENNILSEKNGVVKSIDVEQGQAVMQDDILMTLE"
BASE COUNT          800 a          492 c          502 g          812 t
ORIGIN      
        1 ttcatcattg tatgtccggt caaataccgg aaaccggatt cagctggaca atttggttga
       61 tataaaggaa aatagcaacc cgcctatttt gtatcacttc aaccgttaca aatcggcaac
      121 ggtttctgcc aatttggctg aagggaaaac ccttggcgaa ggaattaaag agatgcaact
      181 cattgccgat aagttgttgg atgaaagctt taccacagcg cttaacgggc cctcgcgtga
      241 ttttgcagaa agtaattcaa atatatcatt tgctttaatt ctggcattgt tgctcattta
      301 tctgattttg gcagcacagt ttgaaagctt ccgcgatccg tttatcatta tgctcactgt
      361 tccgatggct atagcgggag cgatgctttc gctctggatt tttggacaga cattaaatat
      421 attctccgaa atcggaatga ttttgctgat tggtatagtg actaaaaatg gtattttgat
      481 tgtggagttt gctaaccaaa aacgtaaact gggaatgaat aaacgtgtgg cagcatttga
      541 agctgctgca gcccgtttcc gtccgattct tatgacttcg ctggcaacta tttttggagc
      601 gcttcctatc gcattggctt tgggagccgg atcaaccagc cgtattccac ttggaattgt
      661 tgtggttggt ggtttgttct tctcattgtt gcttacttta tttgtaattc cggtaacata
      721 tattgttatg tccagtaaaa caaaaaaaat cgtttcacca tgatacatca acagataaaa
      781 attattcggg gaatagttgc cttattagtt ctgaatgttt cagtttcaag tgctcaaagc
      841 aagctaacta tcaatgatgc catgagtatt tccctgaaaa acaactttga tattctggtt
      901 gccggaaatg aagcgagcat tgccaaggta aataataccc cgggaaatgc aggaatgtta
      961 cctacattgg atttgacagg ttccggtagc cttgaacaaa ataatgtcag tcaaaaactt
     1021 tcttcaggaa cggaaaataa ttatcaggct ttaaggagtt catcacttcg tgcaggtgtt
     1081 caactcaact ggaatttgtt tgatggaggt aaaatgtttg taacaaagag caagttaaat
     1141 gagatacaag cccttggcga aattcagttt aaagataaag tgttgcagac tttattcaac
     1201 gttactgcag cttattacga tatagtccgt caaaaacaac agttgaactc cattaatgaa
     1261 gccttgaaca tgaaccgcga acgtgtgact attgcccagg ccggatacaa tgccggttcg
     1321 ttattgaaat cggatttgct tcaggcaaaa attgatttga atgtaaatac ggaaaatgct
     1381 attaatcaac aattcaccat tgatgctgcc ctgaaaacat tgacattgtt gctgggagga
     1441 aaaacagatg agaaattcga gattacagat tcaattccat taaattattc accggacaaa
     1501 gctggtttac ttgataaaat caacaattcg aatacaagta ttctcagttt tcagaaacaa
     1561 attgatatcg ctcaattagc cctgaaagaa agccgtagtt catatttgcc cactttaagc
     1621 tttaaagccg ggtattacgt atctcaatcg gcaaactcgg ccggatctgt tttgaaaaac
     1681 aattctatcg gaccacaagt ggggggaacg ttggttgttc ctatttacaa tgccggcgaa
     1741 ataaaacgga aagagaaaac ggcaaaaatt caggctcaat cggctcaata tgatttagag
     1801 aatatcaaat tgcagataag tattgagctt caaaatacat tggttgaatt tgaaaatcaa
     1861 caagagctgt tgaaaattga aactgaaaac aatgaattgg caaaagagaa tattcaaatc
     1921 agtatcgacc ggttgaaaca tggacaaaca acttcgctgg aagtccggca ggcacaagaa
     1981 gattatgtac agtcctgcac gcggttgatt aattttcgtt ataacctgaa aatggctgaa
     2041 accaaactga aacaacttgt ttcggagttg taatatctga ttcagttcaa cacaaaaaaa
     2101 gtccaacgaa ttcaatcgtt ggactttttt aattacatat ttcagaatac tattccaatg
     2161 tcattaatat atcgtcttgc ataactgcct gaccttgttc tacatcaatg ctttttacca
     2221 caccattctt ttcagacaga atgttgtttt ccattttcat agattccata acaagcagta
     2281 aatcaccttc ttttaccgta tcaccaactt taactgctac gcgaataata cttccaggca
     2341 gtggtgcctt aataccgttt gcacttggtt tattcgatgg tggcattgga gctgcttttg
     2401 tagcaatttt attttctcca ggtttagtta ccacttcttt acgaaccaga ataggtgttt
     2461 ttaatggatt tagctcttct tcaagtccta cagagtagct ttttccattc acttcaattt
     2521 ctgcctgatt accttctacc gatttgacat tcacactata tgaagtgccc tctattgtaa
     2581 atttgaattt cttcatataa tcttat
//
LOCUS       DATDNM010000227         5389 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_28865, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000227 DATDNM010000000
VERSION     DATDNM010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5389
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28865"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..685)
                     /locus_tag="VI413_03900"
     CDS             complement(<1..685)
                     /locus_tag="VI413_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HEY6913797.1"
                     /translation="MESISSFAELTAHLKSVNCRKRMAVANAVDSHTLDAVLRAVDMG
                     IVEAFLIGDVASIESPELFDHNPSPFIHIIDVPEVHEAAKEAVRMVKSGEADILMKGL
                     VNTDVLLRAILDKEKGILKPGTVMTYNSVMEVPKYHKLIIFSDPVVIPSPNLVQRTAM
                     IKYAINTANKFGIKKPKVALIHATEVANPKIHYMQDYLDIMQMWRNGEFGDVIMDGPL
                     DIFLALDVEK"
     gene            1180..4395
                     /locus_tag="VI413_03905"
     CDS             1180..4395
                     /locus_tag="VI413_03905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2723 domain-containing protein"
                     /protein_id="HEY6913798.1"
                     /translation="MKRFKLLNNIFGWVAFAIAAVTYLLTIEPTASFWDCPEFISTAF
                     KLDVGHPPGSPFFMLLGRFFTLFASDATQVAKMVNSMTALLSAFTILFLFWTITHLAR
                     KVVIKSEDDYTLANTIGILGAGMVGALAYTFSDTFWFSAVEGEVYGFSSFFTAIVFWI
                     ILKWERVADRPGSDRWLIFMAYMMGLSIGVHILNLLAIPAIVLVYYFKKHIPTFKGIL
                     LALLAGAGILGAVLYGLIPGFVQVACWFELLFVNTLGFSFNTGLYVYILSTIAILIWA
                     IYESIVNKSYLRMAISFVLTISVVGIPFFGSHVIIGILLIILMGLFFYFKKQLVNPRW
                     INTILMMVTVLLVGYSSYSVVVIRSSAKPTMDQNSPDNVFSLKYYFNREQYGDRPLIY
                     GPVYSAPVKLRVDGNMCVPEQTQGEAQYAKKPKTSSSDKDEYIITGYKTDYVMDERFN
                     MLFPRMYSTTPQHIEAYKSWAHITGETITYDYCGQQKSDVKPTFGENLRFFFDYQVNF
                     MYMRYFFWNFAGRQNDMQSYGEIDRGNWITGIGFIDTLLIGDQKNIPSELKDNKGHNT
                     YFLLPLLLGILGMIFLIYGGKNGVEGFWVSGLLFLLTGLAIVLYLNQTPYQPRERDYA
                     YAGSFYAFSIWIGLGVLAIIKFLDKYIPKTIVAVVVTICCLGVPALMAQQNWDDHDRS
                     GRYTARDFGQNYLASCKENAIIFTNGDNDTFPLWYNQEVEGNRTDVRVCNLSYLQTDW
                     YIGQMKRGAYKSAPLPISWQPKDYAAGKNEVVSVEDLLKKPVDIKTAFDFMLSSDPQT
                     KYQGEAFIPTKELYLPIDAQEVVKNGTLPMSRASEIIPQIDFSLNRRLTKSELMILEL
                     LKENHWKRPVYFAVTVGDDYYLGLQDHFELTGLAYQILPIGVKGAGSGVNVDEMYTNM
                     MTKFKYGGIDNPKVYLDENILRMCHTHRMMFGQLIGALVAKGDTVRAKKALDYCNKVI
                     PGTTVRHDYTSTQLADYYYKLGEPAKGNEILDAVAKDCVEYLDWYLGMSSTNRNSVSN
                     RIGHNLAVLQQILRISDEAKQKSIMDKYYPRFIDYTKRVQM"
     gene            4396..5001
                     /locus_tag="VI413_03910"
     CDS             4396..5001
                     /locus_tag="VI413_03910"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEY6913799.1"
                     /translation="MNVQFPRVFRPFMGKLVWRKNPSEKVIYLTFDDGPVPEVTPLVL
                     DILDKYGVKATFFCVGDNVLKYPEVYTDVLQRGHKTGNHTYNHLKGFSVSTQEYVENV
                     SKASEYIDSRLFRPPYGRITYKQRKLLRPLYEIIMWDLITHDYNRNLSVETIFRTVKR
                     YSRNGSIIVFHDSIKAKENVLAVLPLTLEYLKAEGYSFGVL"
     gene            5067..>5389
                     /locus_tag="VI413_03915"
     CDS             5067..>5389
                     /locus_tag="VI413_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005813863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2851 family protein"
                     /protein_id="HEY6913800.1"
                     /translation="MKESILHYVWQNKLFAAHNLQSTDGELVEVVDVGKYNTDSGPDF
                     FNAKIKIGDTLWAGNVEIHTRSTDWNKHNHQTDKAYDSVILHVVSEVDGEVYRIDGER
                     IPQVKL"
BASE COUNT         1554 a          939 c         1118 g         1778 t
ORIGIN      
        1 ctttttctac atccagcgct aagaaaatat caagtggtcc gtccataatc acatcgccaa
       61 attctccatt acgccacatt tgcataatgt ccagataatc ctgcatgtag tgaatctttg
      121 gattggccac ctcagtggca tgaataagtg ctactttagg tttttttata ccaaatttat
      181 tggcagtatt aatggcgtat ttaatcatgg ctgtgcgttg aaccagattg ggtgatggga
      241 tgacaacagg atcggaaaaa attatcaatt tgtgatattt tggaacttcc atcacggagt
      301 tgtaagtcat gacagttcca ggttttaaaa tccctttttc tttatccaga atggcccgaa
      361 gcagaacatc tgtatttacc aatcctttca tgagaatgtc tgcttcgccc gattttacca
      421 tgcgcacagc ttctttggca gcttcatgga cctcagggac atcgataatg tggataaacg
      481 gtgatgggtt gtgatcgaat agttcgggcg attctattga agctacgtcg ccaataagaa
      541 aagcctccac aatgcccatg tcaacagccc gcaaaacggc atcaagcgtg tgcgaatcca
      601 cagcatttgc tacggccatc cgttttcggc aattcacact tttcaggtgt gcggtaagtt
      661 cggcaaacga tgaaattgat tccatgcaaa gttattttca gtggatttct caggcaaatg
      721 tatgaatatt attttagtat aacaataaac ttagcaccag gcaagaaacg gtttataatt
      781 atttgttttc taagttttta taaagttctt caataatttc attcttgctt tctaattttc
      841 atttttttat tgcaaaataa aaagaatatc tttcttattt aggttttaat ttcgaaatga
      901 aaggttcgtg tttttaacga gtttgaaata caactccaaa attaattttc tttgcatcga
      961 tatttaacga atattgtcga taaaaccagt tttggcgagc agaacttttg attatgaaaa
     1021 catttttttc ctaaatacct gccaatcact taatattaac taaaaacgag gctaatttta
     1081 aaacaaactg attttttttg tatctttgaa cgttttttca aaatccaaac aaatatagtt
     1141 caactgttat ctatcaacta ataacaataa ttatcattca tgaaacgatt caaattactg
     1201 aacaacatct tcgggtgggt agcatttgca atagctgccg tgacctattt gcttactatt
     1261 gagcctactg caagcttttg ggattgtccg gagtttattt ccacggcttt taaattggat
     1321 gtaggtcatc ctccgggatc gcctttcttt atgttgttag ggcgcttttt tactttgttt
     1381 gcctccgatg caacacaagt agccaaaatg gttaactcca tgacagcttt gttgagtgct
     1441 tttactattt tgtttttgtt ttggactatt acacatttag cccgcaaagt tgtaattaaa
     1501 tcggaagatg attataccct tgctaacaca attggtattt taggtgccgg tatggttgga
     1561 gcgttagcat acactttctc tgatactttt tggttctcgg ctgtggaagg tgaggtttat
     1621 ggattttcat cattttttac tgccatcgtt ttctggatca tccttaaatg ggagcgagtt
     1681 gccgatcgtc cgggctcaga tcgttggttg atttttatgg cttacatgat ggggctatct
     1741 attggagttc acatcctgaa cttgcttgct attccggcga ttgtgcttgt ttattatttc
     1801 aaaaaacata ttccaacttt taaaggtatt ctgctggccc tattagcagg agctggtatt
     1861 ttgggtgcgg ttttgtacgg tcttattcca ggctttgtcc aagtggcctg ttggttcgaa
     1921 ctactttttg taaatacact gggattctca tttaatacag gtttatacgt ctatatattg
     1981 tcgaccattg ccattttaat ttgggcaata tatgagtcga tagtaaataa aagctattta
     2041 cgtatggcca tctcgtttgt attgaccatt tccgttgtag gaatcccatt ctttggatcc
     2101 catgtaatta ttggtattct tcttatcatt ttaatgggat tatttttcta tttcaagaag
     2161 caactggtta acccacgttg gataaatacc attttaatga tggtgacagt tttattagtg
     2221 ggttattctt cttattcagt cgtggttatc cgttcgtcgg caaaaccaac tatggatcaa
     2281 aactcaccgg ataatgtttt ctcactgaaa tactatttta atcgtgagca atatggcgat
     2341 cgtccgttga tttacggacc tgtttacagt gcgccggtga aattacgtgt agatggaaat
     2401 atgtgcgtac ctgaacaaac ccagggtgaa gctcagtatg ccaaaaaacc gaaaacatcc
     2461 agctctgata aagatgaata tatcattaca ggatacaaaa ccgattatgt aatggatgag
     2521 cgttttaata tgctttttcc acgtatgtac agcactactc cgcagcatat tgaggcctat
     2581 aaatcgtggg ctcatatcac gggtgaaacc attacatacg actattgcgg ccaacaaaag
     2641 agtgatgtga aacctacttt tggcgaaaat cttcgtttct tcttcgacta tcaggtgaat
     2701 ttcatgtata tgcgttactt tttctggaac tttgccggtc gtcagaacga tatgcaaagt
     2761 tatggtgaaa ttgaccgtgg aaactggatt accggaattg gatttattga taccttgttg
     2821 ataggtgacc aaaaaaatat tccatcagaa cttaaagaca ataaaggaca taatacctac
     2881 ttcttattac cattgttact tggtattttg ggtatgatat ttcttattta cggtggaaaa
     2941 aatggtgttg aaggattttg ggtgtcagga ttacttttcc ttcttactgg tttagccatc
     3001 gtgttgtatc ttaaccagac tccatatcaa ccgcgtgaac gagattatgc ttatgccggt
     3061 tcgttctatg ctttcagtat ctggattggt ttgggtgttt tggcgataat caaattcctt
     3121 gataaataca ttccaaaaac tattgtggct gttgttgtta ccatttgttg cttgggtgtt
     3181 cctgctttaa tggctcaaca aaactgggat gatcacgatc gtagcggacg ttatactgct
     3241 cgtgatttcg gacagaatta tttggcttcg tgtaaagaaa atgcgattat ttttaccaac
     3301 ggtgataacg atactttccc gctgtggtat aatcaggaag tggagggaaa ccgtacagat
     3361 gttcgtgttt gtaatttgag ttacctgcaa accgattggt acattggtca aatgaaacgt
     3421 ggtgcatata aatcggctcc gcttccaatt tcatggcaac ctaaagatta tgcggcaggt
     3481 aaaaatgaag ttgtgagtgt ggaagactta ttgaagaagc cggttgatat taagactgcc
     3541 tttgacttta tgttaagctc tgatccacag acaaaatatc agggtgaagc atttattccg
     3601 accaaagaat tgtatttgcc aatcgatgct caggaagtgg taaaaaatgg aactttgcca
     3661 atgtcgagag cctctgaaat aataccgcag attgatttct cattgaacag aaggcttact
     3721 aagagtgagt taatgattct tgaactgttg aaagaaaatc attggaaacg tccggtttac
     3781 tttgcggtaa cggttggtga tgattattac ttaggacttc aggaccattt tgaacttacc
     3841 ggtttagcat atcagatttt gcctattggt gtaaaaggag ctggttctgg tgtaaatgta
     3901 gatgaaatgt acaccaatat gatgactaag tttaagtacg gaggtattga taatccaaaa
     3961 gtataccttg atgaaaatat cttacgcatg tgtcacacac atcgtatgat gtttggtcag
     4021 ttaattggtg cattggtagc caaaggcgat acggttcgtg ccaaaaaagc gttggattac
     4081 tgtaataaag ttattccggg aacgactgtt cgtcatgact atacttcaac ccaattggca
     4141 gattattatt ataaattagg agaacctgct aaaggaaatg aaattttgga tgctgttgca
     4201 aaagattgtg tcgaatatct tgactggtat cttggaatga gctcaaccaa tcgtaacagt
     4261 gtatcaaata gaattggtca taatctggct gtacttcaac aaattctcag aattagtgat
     4321 gaggcaaaac agaaatcgat tatggataaa tactatccac gttttatcga ttataccaaa
     4381 agagtacaaa tgtaaatgaa tgttcagttc ccgcgggttt tccgcccgtt tatggggaaa
     4441 cttgtctggc gcaaaaatcc atcggagaag gtgatttatc tcactttcga cgatggacca
     4501 gtgcctgaag ttactccatt ggttttggat attttggata agtacggagt taaagctact
     4561 tttttttgtg ttggcgataa tgtgctgaaa tacccggagg tttacacaga tgttttacaa
     4621 cggggacata aaaccggaaa tcacacgtac aaccatttaa agggcttttc tgtatcaacg
     4681 caagagtatg ttgaaaatgt aagtaaagct tctgaatata tcgatagcag gcttttccgt
     4741 ccaccttatg ggcgtatcac ttacaagcaa aggaagttgt tgagaccgtt gtatgaaatt
     4801 attatgtggg atttgataac tcatgattac aacaggaact tatcagtaga aacgatattc
     4861 agaaccgtga aacggtattc acgtaacggt tcaattattg tttttcatga ttcaataaag
     4921 gcgaaagaga atgtattggc tgttttacca ttgactctcg aataccttaa agccgaaggt
     4981 tattcttttg gagtgctttg agaaattgat tatttgagaa ctataatacc atactaactt
     5041 agttccccgt caaggggata ggggttatga aagaatccat cctacattac gtttggcaga
     5101 ataagctatt tgcagctcat aatttgcaat caaccgatgg agagttggtt gaagtagttg
     5161 atgtgggtaa atataatacc gattcaggtc ctgacttctt caacgcaaag ataaaaatcg
     5221 gagatacgct ttgggccgga aacgtagaaa tacatacccg ttccacggat tggaacaagc
     5281 acaatcatca gacggataaa gcatacgaca gtgttatctt gcatgtggtt tcagaagtag
     5341 atggtgaggt ttacagaatt gatggagagc gtattccgca ggtaaagct
//
LOCUS       DATDNM010000228         3111 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_456167, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000228 DATDNM010000000
VERSION     DATDNM010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3111
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456167"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..480
                     /locus_tag="VI413_03920"
     CDS             <1..480
                     /locus_tag="VI413_03920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007751146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913801.1"
                     /translation="DSQNDVDGWPAYTYDVAAVPADTDADGMPDSWETAHGLNPASAD
                     GAKNTIDAGYTNLEMYLNELAKPVVDAQLLSAVSTVKVSSFNMYPNPLQDESLTIDAP
                     GIIHFLQLISINGSTMLEFKPEQNHISVELKALKQGLYLVKCNLQDGACITQKLIKK"
     gene            485..1900
                     /locus_tag="VI413_03925"
     CDS             485..1900
                     /locus_tag="VI413_03925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006799864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pectate lyase"
                     /protein_id="HEY6913802.1"
                     /translation="MVKRLIFPAFILLSLMINAQTPAFPGAEGGGMYTTGGRGGKVLY
                     VTSLADDGSKGTLRWAVYQKGPRTVLFNVSGIISLTKPLSIKNDSLTIAGQSAPRDGI
                     CIKDYDVFVGANNVIIRFMRFRLGDLVKEHEPDAYGGRDHKNVIIDHCSSSWSVDECA
                     SFYSNENFTMQWCIISEALNNSEHPKGAHGYGGIWGGKNATFHHNLIADNNSRNPRFN
                     GFKRAGLKYNNSQDEERVDFRNNVIYNWGDHSSYGGESGTFNIVANYLKAGQGTNPKI
                     KDRITQVDMDADPAQCPPGYGKYFIDGNFVFGFPEVTKDNWKGVSIDKGIDPLACKAL
                     KPYECTAVKTQPAEVAYEKVLAFAGASYKRDAIDTRVTNEVKTGVNTYKGKLTGRAGL
                     IDSQSDVGGWPEYKSEEAAVDANKDGIPDGWMEKNYPGKMATGLNKEGYTYLEVYLNS
                     LVQPIIDNQTKDSGCCILKKK"
     gene            1919..2875
                     /locus_tag="VI413_03930"
     CDS             1919..2875
                     /locus_tag="VI413_03930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006799865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030599 - pectinesterase activity
                     [Evidence IEA];
                     GO_process: GO:0042545 - cell wall modification [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pectinesterase family protein"
                     /protein_id="HEY6913803.1"
                     /translation="MKKIILFCLLLISIFGYSQQAEYNIVVDRNGTGHFRNIQQAIDS
                     VRAFNPAGRVTIFIKKGVYKEKLEIPTHCCNVRLIGEDRDKTIINYDDHANIRKMGTF
                     RTYTMKICGNDIQLENLTVENSAAPMGQAVALHVEGDRAVFVNCRFLGNQDTIYTGRE
                     NMRQYFLNCYIEGTTDFIFGPSTAWFEGCEIMCKRNSYITAASTPQNIKYGYIFNKCT
                     VHFADSTVTDEYLGRPWRAYAMTLFMNCQLPKGIKAIGWHNWGKVENEATARYMEYNN
                     SGEGAVTLGRPAWIKLLSKKEAAEYTVENVLKGFDGWNPAKQ"
BASE COUNT          924 a          656 c          717 g          814 t
ORIGIN      
        1 gactcgcaga atgatgtgga tggctggccg gcatacacct acgatgtggc tgctgttcct
       61 gctgatacgg atgccgatgg aatgccggat agttgggaaa ctgcccatgg actgaatccg
      121 gccagtgccg atggagcaaa aaacaccatt gatgccggtt ataccaatct ggaaatgtat
      181 ctgaacgaac tggcaaagcc ggtggtggat gcccaactgt tgtcggctgt cagcacagtt
      241 aaagtttcgt ctttcaacat gtatcctaat ccgctgcagg acgaaagcct gacaattgat
      301 gcacccggta ttattcattt cttgcaacta atttctataa acggttcaac aatgctggaa
      361 tttaaaccgg aacaaaacca tatttcagtt gaattgaaag cgctgaaaca ggggttgtac
      421 ctcgttaaat gcaacctcca ggatggagcc tgcataactc aaaaactcat taagaaataa
      481 actaatggta aaaagactga tttttcctgc cttcattctc ttatctttga tgataaatgc
      541 ccaaacgccg gcatttccgg gagctgaagg tggcggcatg tacacaaccg gcggacgggg
      601 tggcaaagtg ttgtatgtaa cttcacttgc cgatgatggt tctaaaggaa cattgcgttg
      661 ggctgtttat caaaaaggtc cgagaactgt tcttttcaat gtttccggaa tcataagcct
      721 gacgaaacca ctgtcaatca aaaacgattc gctcaccatt gccggccagt cggctccgcg
      781 tgatggaatt tgtatcaagg attatgatgt gtttgtggga gcaaataacg tcattatccg
      841 ttttatgcgt ttccgtttgg gcgatttagt gaaagaacat gagccggatg cttacggcgg
      901 aagggatcat aaaaacgtga ttatagacca ttgttcgtca agctggtcgg tagacgaatg
      961 tgcttctttt tattctaatg agaattttac gatgcagtgg tgtatcattt ccgaggcatt
     1021 gaataactcc gaacacccga aaggagcaca tggttacggt ggcatctggg gcggcaaaaa
     1081 tgcaacgttc caccacaacc tgattgcgga taacaacagc cgtaatccaa ggtttaacgg
     1141 gttcaaacgt gccgggctga aatacaacaa ttcgcaggac gaagaacgtg ttgatttccg
     1201 taacaatgtc atttataact ggggcgacca cagttcctat ggcggcgaaa gtggcacatt
     1261 caatattgtg gccaactatt taaaagccgg acaaggcacc aatccgaaaa tcaaagaccg
     1321 tattacacag gtagatatgg atgctgaccc tgctcaatgt cctccgggat atggaaagta
     1381 tttcattgat gggaactttg tgtttggttt ccctgaagta accaaagata actggaaagg
     1441 cgtgtcgata gataaaggca ttgacccgct tgcgtgtaaa gccctgaaac cgtatgaatg
     1501 tactgctgta aaaacacaac cagccgaagt ggcttacgaa aaagtgctgg cttttgcggg
     1561 tgcttcgtat aaacgggatg ccattgatac acgtgtaacc aatgaggtaa aaacaggggt
     1621 aaacacatac aaaggcaaac tcacaggccg cgcagggcta atagattcgc aaagcgacgt
     1681 gggcggctgg cccgaatata aatcggaaga ggcagctgtt gatgccaaca aggatggaat
     1741 tcctgatggc tggatggaga aaaactatcc cggaaaaatg gctaccggtt taaataaaga
     1801 ggggtatact tacctggaag tttacctgaa cagcctggtt caacctatca ttgataacca
     1861 aacaaaagat tctggttgtt gcattctcaa aaagaaataa aattcacagc tctttttcat
     1921 gaaaaaaatc attttatttt gtcttctgct aataagcatt ttcggatatt cccagcaagc
     1981 cgaatacaac attgttgttg accggaatgg aacaggacat ttccgtaata tccaacaagc
     2041 cattgactct gtccgggcat ttaaccctgc cggacgggta actattttta tcaagaaagg
     2101 cgtttataag gaaaaactcg aaatacccac gcattgctgc aatgtgcggt tgattggtga
     2161 agaccgcgat aaaaccatta tcaattacga tgaccatgcc aatatccgta aaatgggaac
     2221 attccgtacc tataccatga aaatatgcgg taatgacatt cagttggaaa atctgactgt
     2281 tgaaaactcg gctgcaccta tgggacaagc agtggcactt catgtggaag gtgaccgggc
     2341 cgtatttgta aattgccgtt tcctgggcaa tcaggatacc atttacaccg gacgggagaa
     2401 tatgcgccag tattttctga attgttacat tgaaggaaca accgatttta tctttggccc
     2461 atcaacagcc tggtttgaag ggtgcgaaat tatgtgcaaa cgtaactcct acatcacggc
     2521 tgcaagcaca cctcagaata tcaaatacgg ctatattttc aataaatgca ctgtccattt
     2581 tgccgacagc acggttactg acgaatatct cggccgcccg tggcgcgcct atgccatgac
     2641 tttgtttatg aactgccagc tacccaaagg tatcaaagcc attggttggc ataattgggg
     2701 aaaagtagaa aatgaagcca cagcccgtta catggagtat aacaattccg gcgaaggcgc
     2761 tgttactttg ggtcgtccgg catggatcaa gctccttagc aaaaaagaag ctgcagaata
     2821 cactgtggaa aatgtgctga aaggctttga tggctggaac cctgcaaaac aataaatatc
     2881 attttaaacc acaacaggca catagtttta ctattgtttc tgttgtggtt tctcttttaa
     2941 taaaccacaa cagaatatac ttttactcat gaagaaactt acaatccttt cgctttcact
     3001 cattctatgt tccttttttc acgtatcggc ccagtacgta tctaaagtat gggtgtctga
     3061 tctgggaaac ggtaattaca agaatccggt tttgtatgcc gattattccg a
//
LOCUS       DATDNM010000229         5668 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_990230, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000229 DATDNM010000000
VERSION     DATDNM010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5668
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_990230"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(6..1730)
                     /gene="recJ"
                     /locus_tag="VI413_03935"
     CDS             complement(6..1730)
                     /gene="recJ"
                     /locus_tag="VI413_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005866190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008297 - single-stranded DNA
                     exodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEY6913804.1"
                     /translation="MINTWIYRTLTEQQIEIQKKLAEELSISPVLAQLLVQRDIVTFE
                     EARRFFRPDLSDLHDPFLMADMHNAVNRLTKAMQKNEKIMVYGDYDVDGTTSVSLVYK
                     FLKQFYSNIDFYIPDRYLEGYGISIQGIDYAAANDFKLIIALDCGIKAIEKVKYALGV
                     GVDFIICDHHTPDAELPPAVAVLDPKRDDCTYPYKHLSGCGVGFKLMQAFAITNNIDF
                     SQLTPLLDLLALSIASDIVPITGENRILAFFGLKQINSNPSIGLKGILDVCGLADKEI
                     TISDIVFKIGPRINASGRMKLASEAVELLVSSDHVFAKEKSGTINEYNNDRKDLDKNI
                     TDEAIALIGADKRYAERKSIVVYKPDWHKGVIGIVASRLSEEFYKPSIVLTKSNGLAS
                     GSARSVSGFDIYKAIDSCRDLLENFGGHMFAAGLSMKEENIEAFTNRFEQFVAENILL
                     EQTYPQIDIDAVLEFKDITPKFFRVLKQFGPFGPGNMKPVFASKKVFDFGTSRLVGKE
                     QEHLKLELVDSSSENVMNGIAFRMHEYNDHLKALNPLDICYTLEENSFNGNTTIQLMI
                     RDIKIDEA"
     gene            2076..2639
                     /locus_tag="VI413_03940"
     CDS             2076..2639
                     /locus_tag="VI413_03940"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005677067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEY6913805.1"
                     /translation="MQEEIKKALDVLYNGGVILYPADTVWGLGCDATNEKAVKRIHEI
                     KKSTDAKAMLVLIDNPGKLQSYVDEVPDIAWDLIEMSETPLTIIYPVAKNLAPNLVAA
                     DKSIGIRVTKEVFSRNLCMRFKKPIVSTSANVCGAPTPANFSQIADEIKSAVDYVVNF
                     RQDDCSQPKTSSIIKLGKGNLFKLIRE"
     gene            2645..4045
                     /locus_tag="VI413_03945"
     CDS             2645..4045
                     /locus_tag="VI413_03945"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEY6913806.1"
                     /translation="MDKRRLVLKYLLFDLLASIIVWVLFMLFRKIVNDGLIFDGLRIL
                     IPNYNFFSSLSIFPVSCVFVHYLSGFYLQPHKQSTLTSILTTLAASAIISITIFFVLM
                     LDDVVVSYEYYYYSLLVLFGLLFSITYGFRAFVSSQVSYNYRTKKWTSNTLIIGTGTN
                     ALKIANELEKNAVQSTLMGFVSVNQQILVPQDKVLGTMNQIAAIIEKKNIQEAIVVLD
                     NADEQQLFTIINSLYKFNIEIRFTPRLYEILTGSAKINRLEISPFVSITNSSMPDWEA
                     SVKRFSDILLSTIALVILSPFLLYFMFRIKRDSKGPVFYRQERIGRYGKPFDILKFRT
                     MYLGSENGIPKLSSANDDRITPVGKILRKYRIDEIPQFWNIIKGDMSLVGPRPERRYY
                     INRIIEDAPYYCLLYKIRPGLTSWGPIKIGYSDSIEKMIERLNYDIIYLDNMSLLTDM
                     KILIYTFEIIFKGKGV"
     gene            4100..>5668
                     /locus_tag="VI413_03950"
     CDS             4100..>5668
                     /locus_tag="VI413_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008779521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEY6913807.1"
                     /translation="MENRSWYLKMLAWRELHIPQRNFILMLSFVVGVFAATAAFLLKS
                     AIHIIQHFLTESFNRNDVNYWYLVFPAVGILITSFFVRNIVKDNISHGVTRILYAISQ
                     RKSILKLHNTWTSIVGSSITIGFGGSVGAEAPIVLTGSAIGSNLGNFFKMDQKTLMLL
                     VGCGAAGAIGGIFKAPIAGLVFTLEVLMLDMTLTAIVPLLISSVTATSLSYFFSGSNF
                     TFEFGTYEPFAISRIPYLILLGIVCGLVSLYFTRGMNWLEGKFRKLRNPYSKLAVGGV
                     MLSLLIFIFPPLYGEGYDTIVALLNGHSASVLDRSFFLGFGDNPWVLISYLVLIIVFK
                     IFASTATTSAGGVGGIFAPSLFIGCLTGFVVARVLIFFGLLVPEANFALAGMSGLMSG
                     VMHAPLTGIFLIAELTGGYNLFMTLMIVSTVSYLTIILFEPHSLYAMRLAQKGELLTH
                     HKDKAILTMLKMENFIETDFIELNPEMTLGELVKNISRSKRNLFPVVNPQTHILVGIV
                     LVDEVRNIMFRPDLY"
BASE COUNT         1532 a         1072 c         1244 g         1820 t
ORIGIN      
        1 ttacattatg cttcatcaat ttttatatcc cgaatcatta attgaatggt ggtgttgcca
       61 ttaaatgaat tttcttccag tgtgtagcaa atgtctaatg gattcagcgc tttcagatgg
      121 tcgttatatt cgtgcatacg gaacgcaatg ccattcataa cgttctcgga acttgaatct
      181 accaattcca gttttagatg ttcctgttct tttccaacca ggcggcttgt tccaaaatca
      241 aacacttttt ttgatgcaaa aacaggtttc atatttcccg ggccaaaagg accgaattgt
      301 ttcaacaccc tgaaaaattt gggagtaatg tctttgaatt caagtactgc atcgatgtca
      361 atttgtggat aagtttgttc caacagaatg ttttcagcta cgaattgctc aaaacgattg
      421 gtaaaagcct cgatattttc ttctttcatg gagaggccgg ctgcaaacat gtggccaccg
      481 aaattttcca acaaatcgcg acaagagtca atggctttgt aaatgtcgaa acccgacacg
      541 gagcgtgctg accccgatgc cagtccgttc gatttagtaa ggacgatgct cggcttatag
      601 aattcttcgg acaggcggga agctacaatc ccgattacgc ctttgtgcca gtctggtttg
      661 taaactacta ttgatttccg ttcggcgtag cgtttgtctg ctccgattaa agcgatggct
      721 tcatcggtaa tgtttttatc caggtctttg cggtcgttgt tgtattcgtt tatagttcca
      781 ctcttttctt tggcaaaaac atggtcgctt gaaaccagca gctccacggc ttccgaagct
      841 agtttcattc tgccggaagc attgatacgc ggtcctattt taaaaacgat atcgctgatc
      901 gtaatttctt tgtcggccag tccgcatacg tccagaatcc ctttcagtcc aatgctcggg
      961 ttggagttga tttgttttaa tccgaaaaat gcgaggatgc ggttttctcc ggtaatcggc
     1021 acgatatccg atgcaatgct cagcgccagt aaatcgagta ggggagtgag ttgcgaaaaa
     1081 tcaatattgt tggtaatggc aaaggcctgc attagcttga acccgactcc gcagcctgaa
     1141 agatgtttgt acggataagt acaatcgtcc cgtttcggat cgagaactgc cactgctggt
     1201 ggtaattcag catcgggagt atggtggtcg cagataatga aatcgacgcc cactcccaac
     1261 gcatatttta ctttttcgat ggctttgatg ccgcaatcca acgcaatgat gagtttaaaa
     1321 tcattggcag cagcataatc aattccctga atggatatgc cataaccttc gaggtaacgg
     1381 tctggaatgt aaaaatcgat attggaataa aactgtttca gaaatttgta gaccaaagat
     1441 actgaggtgg ttccgtccac gtcgtaatcg ccgtaaacca taatcttctc attcttctgc
     1501 attgcttttg taagcctgtt gacagcatta tgcatgtcgg ccatcaaaaa cgggtcatgt
     1561 aaatcactta aatcgggtcg gaaaaaacgg cgtgcttctt caaaagtaac aatatcccgt
     1621 tgaactaaca attgtgcgag tacagggctt atactcaatt cttctgctaa ttttttttgt
     1681 atttcaattt gttgttctgt aagggttctg taaatccatg tatttatcat tgtgtaatat
     1741 ttttcaaggc aagtggagaa attttgctct ccgtaaaaat caaagatgtt attctcaatc
     1801 ttttataaat caattcaact aacgcgataa catctttctg actgctgtaa aagtacaagt
     1861 ttttttttaa tcgcacaaga acaacattct gcctgtttat gaaaactccg ggataaaagg
     1921 gattttgtaa agaacataaa aatattatct ttgtgcaaag aataaatagt ttaaaagaaa
     1981 taatttgttt tcttttacgt taagttatgt tagcgtgtgc ttcaatcgaa aattgagagt
     2041 taaattcatt ctagggccgg aggttcaatt tgtttatgca ggaagaaatt aaaaaagcgt
     2101 tggatgtgct ctataacggt ggggttattt tgtatccggc ggatacggtg tggggattag
     2161 ggtgtgatgc caccaacgaa aaggcggtaa agaggattca tgaaataaaa aagagcacag
     2221 atgcaaaagc catgcttgtg ttgattgata atccgggaaa attgcagtcg tatgtagatg
     2281 aagtgccaga cattgcctgg gatctgattg aaatgtccga aaccccattg actatcattt
     2341 atcctgttgc aaaaaatctg gctccaaacc ttgttgcagc agataaatcc atcggaatca
     2401 gggtgacaaa agaggttttt tccagaaatc tttgcatgcg ctttaaaaag cctattgttt
     2461 caacttcagc taatgtatgc ggtgcgccaa cgcctgcaaa ttttagtcag atagcagacg
     2521 aaataaaatc ggcagtagat tatgtagtaa atttccggca ggatgactgc tcgcaaccca
     2581 aaacatcgtc cataatcaaa ctgggaaaag gaaatctgtt taaacttata cgggagtaaa
     2641 ttgtatggat aaacgtcgtt tggtactaaa atatcttctt ttcgatttgc tggcatcaat
     2701 cattgtatgg gtgttgttca tgctttttcg aaaaattgta aacgatggcc ttatattcga
     2761 tgggttgaga attcttattc ctaattacaa ctttttcagc agcttatcca ttttccctgt
     2821 cagttgtgta tttgttcatt atttgtcagg tttttacctg caacctcaca agcaatctac
     2881 tcttaccagc atactcacca cgttggctgc ttcggccata atttctatta caatcttttt
     2941 tgtgctgatg ctcgacgatg ttgttgtttc gtatgagtat tattactatt cactgcttgt
     3001 gttattcgga cttttgtttt ctattacgta tggcttccgg gcgtttgtaa gttcgcaggt
     3061 aagttataat taccggacaa agaaatggac tagcaatacg ttgattatcg gaacggggac
     3121 taacgcattg aaaattgcaa atgaacttga aaaaaatgcc gtgcagagta cgctgatggg
     3181 atttgtttca gtcaatcaac aaattctggt tcctcaggat aaagtgcttg gaaccatgaa
     3241 ccagattgca gcaatcatag aaaagaaaaa tattcaggaa gccattgttg tgttggataa
     3301 tgcagatgaa caacaactgt ttacgattat taactcattg tacaagttta atatagaaat
     3361 acgatttaca ccccggttat acgaaatcct gacaggtagt gctaaaatta accgcctgga
     3421 gataagtccg ttcgtaagta ttaccaattc ttctatgccc gattgggaag ccagcgtgaa
     3481 gcgtttttcc gatatacttc tttcaactat tgcgcttgtt attctctcgc cgtttttgct
     3541 gtattttatg tttcggatta agcgcgactc caaaggacct gtattttatc gccaggaacg
     3601 gattggtcga tacggcaaac cttttgatat tttgaaattc agaaccatgt atctgggttc
     3661 ggagaatgga atacctaagt tgagcagtgc caatgacgac cggattactc ccgtaggaaa
     3721 gattctgcga aaatatcgta ttgatgagat tcctcagttt tggaacatta taaaaggtga
     3781 tatgagtctg gttgggcctc gtcccgaaag gcgttactat attaaccgga tcattgaaga
     3841 tgcgccgtat tattgcctgt tgtataaaat acgcccggga ctaacctcgt ggggccccat
     3901 aaagataggc tattccgata gcattgaaaa aatgattgaa cggctcaatt acgacattat
     3961 ttacctggat aatatgtcgt tacttaccga catgaaaatc ctgatataca ccttcgaaat
     4021 catatttaaa gggaaagggg tttgatgtag ccgcaaattt ctatatcttt gtgtctggtt
     4081 ttttagggaa aaaagagata tggagaatag aagttggtat ctgaaaatgc ttgcgtggcg
     4141 ggaattgcat ataccgcagc gcaactttat tttaatgtta agttttgtgg taggtgtttt
     4201 tgctgctaca gctgcatttt tgctgaaatc ggccattcat attatccaac acttcctcac
     4261 cgaaagtttc aaccgaaacg atgtgaatta ctggtatctt gtttttcctg ccgtaggtat
     4321 acttatcact tctttttttg tccggaatat cgtgaaagat aatatcagcc atggtgtgac
     4381 gcgtattctc tatgccattt cgcagcgaaa aagtatttta aaacttcata atacctggac
     4441 gtcgattgtt ggaagttcta taacgatcgg atttggtggt tcggtggggg cagaggcgcc
     4501 tattgtgctg accggttcgg ctatcggttc caacttgggg aacttcttca agatggacca
     4561 gaaaacgttg atgttgctgg ttggttgcgg tgctgcgggg gctataggcg gtatttttaa
     4621 ggcacccatt gcagggttgg tctttacgct ggaggtgttg atgctcgaca tgacacttac
     4681 ggctattgtt ccattgctta tttcttcggt taccgccact tcactttcat atttcttttc
     4741 gggaagtaat tttacatttg agtttggaac atacgagcct tttgccatat cacgtattcc
     4801 gtatcttata ctactgggaa ttgtttgcgg gttggtatcg ctttatttta caaggggcat
     4861 gaactggctg gaagggaaat tccggaaact gagaaatccc tattcgaagc tggcagtggg
     4921 aggcgtaatg cttagtttgc ttatttttat atttccacca ttatatggcg aaggttatga
     4981 taccattgtg gcgctgctta acggacattc ggcatcggtt ctcgaccgga gttttttcct
     5041 aggctttggt gataatccct gggtgctgat ttcatatttg gtactgatta tagtatttaa
     5101 aatctttgca tctactgcta caaccagtgc cggaggtgtt gggggtattt ttgcaccctc
     5161 tttgtttatt ggttgtttga cagggtttgt ggtagcccgg gtgttgattt tcttcggatt
     5221 gcttgtgccg gaagctaatt ttgcgttggc cggaatgtcc gggcttatgt cgggtgttat
     5281 gcacgcacca cttactggaa tattcctgat tgcagaactt accggagggt ataacctgtt
     5341 tatgactttg atgattgttt ctaccgtttc gtacctcacc attattttgt tcgagccaca
     5401 cagcttgtat gccatgcgtt tggcacagaa aggggaattg cttacacacc acaaggataa
     5461 agcgattctc actatgttga aaatggaaaa ctttattgaa acggatttca ttgaattgaa
     5521 tcctgaaatg accctgggag aattggtgaa aaatatatca cgttcaaaac gaaacctgtt
     5581 tccggtagta aatccccaaa ctcacattct ggttggaatc gtgttagtcg atgaagtgcg
     5641 aaatattatg tttcgtccgg acttatac
//
LOCUS       DATDNM010000230         3781 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_883241, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000230 DATDNM010000000
VERSION     DATDNM010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3781
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_883241"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..773
                     /locus_tag="VI413_03955"
     CDS             <1..773
                     /locus_tag="VI413_03955"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEY6913808.1"
                     /translation="DDVFVISDDAWEAAKKEIVYHFRSSNRLDLCLNLIRDFEQSNPK
                     KKYKSDFETFVRESKLEDFYNENGETIFVSTIHKAKGKEFDNVFIMLDNYNAESDEAK
                     RVLYVGMTRAKRNLTIHLNTYLLDAPSKVSINRIENKEAYLAPNGISLHLSHKDVYLG
                     YFEYVQNRIRNIVSGDTLMIREEGCANSNGDLVLKFSQKTLDILKYQEEKGYRLKEAK
                     VNFIVYWHKEGSDKEVKIILPELYLEKEGKVNNSDSLL"
     gene            967..1539
                     /locus_tag="VI413_03960"
     CDS             967..1539
                     /locus_tag="VI413_03960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle suffix domain-containing
                     protein"
                     /protein_id="HEY6913809.1"
                     /translation="MENQFREDGFIPKHGGYKNLLTYQKADIILIGTMYFCEKYISKF
                     DRTYDQMVQAARSGERNILEGSMASGTSKETEIKLTNVARASLDELRRDYEVFIITRK
                     HNTWGKDHPYYAELSKKHRIQPQAYEVFKKGIESDNPEVAANVLLSLINVTMYLLTQQ
                     LKRLETDFLNEGGLRERMTKARIDFRNKKK"
     gene            2109..>3781
                     /locus_tag="VI413_03965"
     CDS             2109..>3781
                     /locus_tag="VI413_03965"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HEY6913810.1"
                     /translation="MKKLVLGVVITLMLLPLTVSAQKPQRDPKEEQVLISQLRQLNAA
                     VVPQFEAGTKAMDEGNRMQADSLYSIVYAQAPDFDVVLRRLGTLRFEAGKLHEGLELG
                     RKALALHEAPFNYLSLAYMYMEQTDSADINQAYTYLKKAAMLPGGDDVDITLLLAQNA
                     LQRNDIYGFEREVNQLVKSHQELMQTHYYAAILHIYKEKWSEADTEIKKAQTLGLSQE
                     TVDQLMNSGVSNHILKIRIWIALGLIIGIWVVGLLLLFGSGKIFSGLTLRTIEKGKLE
                     TGSALSGGKLRAAYKKLILAGSIYYYISLPVVLILVIAVTGGLIFLSLAVGAIPIKLI
                     FILVIAAGSSIYSMVRSLMVKADTTDPGRLLNKEEAPGLYQLTDEVAQLMGTRPIDEI
                     RITPLNDMAVYEKGSWREKINDQGKRILIVGTSVLNGFKTKDFKAVLAHEYGHFAHRD
                     TAGGDIAFRVKRDIYNFIIALVKAGQNTVWNLSFHFLRMYYTLFCRITHGATRLQEVL
                     ADRLAAQTFGAEAFKNGLTHVIRREMEFSKSANQEIQLAVEQKRAISNL"
BASE COUNT         1181 a          786 c          835 g          979 t
ORIGIN      
        1 cggatgatgt gtttgtgatt tcggatgatg cctgggaggc cgcaaaaaaa gagatagtct
       61 atcatttccg aagcagcaac cgtctggatc tgtgtttgaa tttaatcagg gattttgaac
      121 aaagtaatcc gaaaaaaaaa tacaaatcgg attttgaaac ctttgtcaga gaatccaagt
      181 tagaggattt ctataacgaa aatggtgaaa cgatatttgt ttcaaccatt cataaagcca
      241 aaggaaaaga gtttgacaat gtttttatca tgctggataa ttacaatgcc gagagtgatg
      301 aagctaagcg ggtgctgtat gtgggtatga cccgcgctaa gcgcaatctg actattcacc
      361 tgaacaccta tttactggat gctccgtcca aagtgtcaat aaacagaatc gaaaacaaag
      421 aggcttattt agcacccaat ggcatttcgt tgcacttatc ccacaaagat gtatatctgg
      481 gatattttga atatgtgcaa aacagaatcc ggaacatagt cagtggggat accttgatga
      541 tcagagaaga aggctgtgca aactccaacg gtgatttggt actgaaattc tcgcaaaaaa
      601 cactggatat cctgaaatat caggaagaaa aaggctatcg gctcaaagaa gccaaagtca
      661 actttatcgt gtattggcac aaagaaggtt cggataaaga ggtgaaaatc attttacctg
      721 aattgtatct ggagaaagaa gggaaagtta acaatagtga ttcattattg tagcactatg
      781 aagtctccaa caaagcctca ctcctaggcc tgagtttttt atttggtaat taggctgtag
      841 ctatttattt aaattaattt ttctatattt gcaaggacta aaatgacttt agagacgttg
      901 ataaagaaca accttattgt cattaatgtc ctttgaagtc ctccaacgag aaaccggtaa
      961 atagttatgg aaaatcagtt cagagaagat ggctttatcc ccaaacatgg gggctacaaa
     1021 aacctgttga cttatcaaaa ggcagacatt atattaatag gaaccatgta tttttgcgaa
     1081 aagtacataa gtaagtttga cagaacctac gaccaaatgg tgcaggctgc acgttcgggt
     1141 gagcgaaaca tattggaagg aagtatggca tccggcactt ccaaagaaac agaaataaaa
     1201 ctaacaaatg tagcccgggc atctttggat gagcttcgaa gggactacga ggtgtttata
     1261 attacgcgaa aacacaacac ttggggaaaa gatcatcctt attatgcaga gctttcgaaa
     1321 aaacaccgca ttcagccaca ggcttatgag gtttttaaaa aaggcattga aagcgacaac
     1381 cccgaagttg cagccaatgt acttctgagt ttaataaacg taacaatgta tttacttacc
     1441 caacaactta aacgcctgga gacggatttt ctaaacgaag gtggattgcg ggaacgcatg
     1501 actaaagcca gaatagattt tagaaacaag aaaaaatagt caacaaaaag aaattctttt
     1561 gagaacaagc ccctgaagat atccgttttc agaggcttgc tttttctgca tcctttatat
     1621 tgcggtgcgc tgcaccttat tcttatttat tggtcggaat catctacaaa tagtacggtg
     1681 cgctgcacct ttaattgcac gttcccgaaa tttccctaca aatagttcgg ggcgctgtac
     1741 cttaattggt tagtcggggc gcggcttaaa gcattggcaa gtcggggcgc gacttaaagt
     1801 cgcactccga caatatcagc tgagcgccaa atctcagttt ttcaacagca ggtaactgaa
     1861 aacaaacttt tcaggcatcc gttgttttta tctctctcct ctcccactca aaaagctctt
     1921 ctatgaaagt ctttacaaac aaaacagcag tttcaacaaa cagaacaagt tagagcattc
     1981 gcaataaatt tcacacaatt caattatttt cggggtagat ataatttaag ttataaaaaa
     2041 acatttatat ttgtattcac attaagaatg caattaaatt actcacactt tatgttcctg
     2101 aaaacaagat gaagaaatta gtattaggtg ttgtgatcac ccttatgctg ttgccattaa
     2161 ccgtttccgc tcaaaagcct caacgcgatc ccaaagaaga acaggtattg atatcgcaac
     2221 ttcgacaact caatgctgca gtggtaccac agtttgaagc cggcaccaaa gccatggacg
     2281 aaggtaaccg catgcaggcg gatagtttgt acagcattgt atatgcgcag gcacctgatt
     2341 ttgatgtagt actccgccga ttgggtacgc tccgttttga agccgggaaa ctgcacgaag
     2401 gccttgaact cggtcgcaaa gcgttagccc tgcacgaagc tccgtttaat tacctctccc
     2461 tggcctatat gtatatggag caaaccgact ccgccgatat caaccaggcc tacacctacc
     2521 tgaaaaaagc cgctatgcta cccggcggcg atgatgtgga cataacctta ttattggcac
     2581 agaatgcgtt gcagcgtaac gacatatatg gctttgagcg cgaagtaaac cagctcgtaa
     2641 aaagtcatca ggaactaatg cagacgcatt attatgcagc catcctgcac atttacaaag
     2701 aaaagtggag cgaagcagat accgaaataa aaaaagcaca aaccctaggg ttgtcacagg
     2761 agactgtgga tcagttaatg aattccggtg tgagcaacca tattctcaaa attcgtatat
     2821 ggatagccct tggactgatt attggcattt gggtagtagg actgctgttg ctgtttggct
     2881 ccgggaaaat cttttcgggc cttacgctac gcaccatcga aaagggcaaa ctggaaaccg
     2941 gctcggctct ttcgggaggg aaactccgtg ctgcctacaa aaaactgatt ctggccggaa
     3001 gtatctatta ctatatttca ctacccgtgg tattgattct ggtcatagcg gtgacaggtg
     3061 gtctgatatt cttatcattg gctgtgggcg ctattcccat taaactgatc tttattctgg
     3121 taatagctgc aggaagttca atctatagca tggtacgttc gttgatggta aaagccgata
     3181 ccaccgatcc gggccgtttg ctaaacaaag aagaagcccc cggactttat cagctaaccg
     3241 acgaagtagc gcaactgatg ggcacccgcc ccatcgacga gatacgcatc acgcccctta
     3301 acgatatggc tgtgtacgaa aaaggaagct ggcgagaaaa aataaacgat cagggcaaac
     3361 gcatcctgat agtgggtact tcggtgctga atggcttcaa aacaaaggat tttaaagccg
     3421 tactggcgca tgaatatggt cactttgccc atcgcgacac agcggggggc gatattgctt
     3481 tccgtgtgaa gcgcgatatt tacaacttca tcatagcgtt ggtaaaagcc ggacaaaaca
     3541 cggtttggaa cctgtcgttc cacttcctgc gcatgtacta cacgcttttc tgccgcatta
     3601 cccacggggc tacccgtttg caggaagtac tggctgaccg actggctgca caaacattcg
     3661 gtgctgaagc gtttaagaat gggttgacgc atgtgatacg ccgcgaaatg gagttttcta
     3721 agagtgccaa ccaggaaata caactggccg tagaacaaaa gagagccatc agcaacctgt
     3781 a
//
LOCUS       DATDNM010000231         5333 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1311024, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000231 DATDNM010000000
VERSION     DATDNM010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5333
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1311024"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VI413_03970"
     CDS             complement(<1..485)
                     /locus_tag="VI413_03970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding domain-containing protein"
                     /protein_id="HEY6913811.1"
                     /translation="MKNLKLAFALLVLFSAGLQAKNTREIQDFNQNWKFTLADSMLNA
                     SLPLFDDSKWRVLNLPHDWSIESDFGKDFPATAGGGALPGGLGWYRKTFTLQKSKDLQ
                     AKKIFIEFDGVYRNSEVWINGTYLGKRPNGYISFRYELTPYIKYGANNVIAVKVDNTK
                     QP"
     gene            1258..2852
                     /gene="pckA"
                     /locus_tag="VI413_03975"
                     /pseudo
     CDS             1258..2852
                     /gene="pckA"
                     /locus_tag="VI413_03975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005860732.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
     gene            complement(2975..3436)
                     /locus_tag="VI413_03980"
     CDS             complement(2975..3436)
                     /locus_tag="VI413_03980"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY6913812.1"
                     /translation="MKTTMIKKVLIAIDYAETAQTIAEKGFSMAKAMNAETILLHVIS
                     EHPVYYSGYSYMRELQVEVSSDLRKSTQEFLDKLKKHLGDVSIKTVLKDSVDIPGTIL
                     STAKALEVDLVVMGTHSRKWLENIIMGSEVEEVLRKTTIPLYIIPTKKHKE"
     gene            complement(3794..4048)
                     /locus_tag="VI413_03985"
     CDS             complement(3794..4048)
                     /locus_tag="VI413_03985"
                     /inference="COORDINATES: protein motif:HMM:NF024086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEY6913813.1"
                     /translation="MNSKQMCQSCGMPLSKDPNEGGTNADGSKSEKYCSYCYQNGEFT
                     FNGTVSEFQEHCRMKMKEGGHSGFMAWLFSRGLKRLERWK"
     gene            4879..>5333
                     /locus_tag="VI413_03990"
     CDS             4879..>5333
                     /locus_tag="VI413_03990"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY6913814.1"
                     /translation="MLPTENLIQEHKTIIEILNITNKIAENIKQKKVFYTMDIEKIVD
                     FLTGFWDKCHNEKEEKALYPELISSRIQIEDNSIAGISNEHAMGRIYIKEMSYSIVNC
                     KMGNPFSCEKLADCLINYSNLLRSHIQKEEEVLFPIINQTLTDKKQREI"
BASE COUNT         1752 a          992 c          888 g         1701 t
ORIGIN      
        1 ggctgtttgg tattatccac ttttacggca atcacgttat ttgccccata ttttatgtat
       61 ggagtcaact cataacgaaa agagatgtat ccgtttggtc tttttcccag gtaagttccg
      121 ttaatccaca cttcactgtt gcgatacacg ccatcgaatt cgataaaaat cttttttgct
      181 tgtaaatctt tcgatttctg gagtgtaaat gttttacggt accatcccaa tccacccggt
      241 aatgctcccc cacccgctgt agctgggaaa tcttttccaa aatcggattc tatactccag
      301 tcgtgaggca aattgagtac cctccattta ctgtcatcga atagcggcaa tgatgcattc
      361 aacatactgt cggccaacgt gaatttccag ttttgattga aatcctgaat ttcacgtgtg
      421 ttttttgctt gcaaaccagc actgaataag accaacagtg cgaatgctaa tttaagattc
      481 ttcatgtgtt atttattgtg tttgtatttt ttataaattt tccgatagac agttccgact
      541 ggcaactaaa cccgtgccaa aaagaaacac aggtataaat tgcttacaaa aatagatgat
      601 ttatctgatt gtaacaatcg gattatatcc ggcaaacaga tttcatatct cctgggagtt
      661 taaaatggaa ctggtagatt tttcaaatcc caacaattcc actttcatga aaaccaggga
      721 attatttgat cttacaaaaa tactcaataa caagttgcaa aagagtgata aataagggat
      781 attgggtgta taaatgttat taaatgaggg atggaatgta aacaatgtct gaaaacaagt
      841 atttattaaa actttttgat taaaatccgg tattttattt atcattaaat ttcagtaaat
      901 attacaaata attttcattt tactgtattt ttatacaaag taaaaacagt agacttaata
      961 aatctacaca ttcaattgat tatctgcaat ttgaatgaaa gtcaaaatgc agataacatc
     1021 aaaacacatg accggtaata cttattttcg catgctgatt ataaccattt tagtcgaagc
     1081 cattgtatat ttatcatttt tataaaaaac ttatgcacaa atacggaaat atttctttaa
     1141 tgcctttcat actaccaaaa aaaatagtac ttttgtcgcg tcaaaaaagg ctcttttttg
     1201 acttgttgtt ccgcgagata atacaaaata aaataagatc acttaattta aaaaaaaatg
     1261 gcaaatttag atttatcaaa gtatggtatt tctggcaaca tcgaagttgt tcacaatcca
     1321 tcttatgagg ttcttttcca ggctgaagtt gacccaaaaa acgaaggttt cgaaagaggt
     1381 gtgttaacta acacaggtgc tgtatcagtt gatacagggg tatttaccgg ccgctcgcct
     1441 aaagaccgat acattgttaa agatgcgact tctgaccaac atatttgggg gatggaaaca
     1501 tcaacaaacc ggtttcaaca gatatctggg ctcactgtaa aggtcttaca ttgaatcagt
     1561 tgaacacagc taaaaaattg tatgttgttg atgcttattg cggaacaaac gaagatacac
     1621 gcatgaaaat ccgtgtagtt tgcgaagtag catggcaagc tcacttcgtg acaaacatgt
     1681 tcatccgtcc ttctcactac gaattagcta actttggtga acctgatttc gtcatcttca
     1741 acggttcaaa aaccaccaac cctaactgga aagaacaagg tttgaactct gaagtatttg
     1801 ttatgttcaa ccttactgaa aaaattcaaa tcattggcgg tacttggtac ggtggtgaaa
     1861 tgaaaaaagg tatgttcgcc atgcaaaact actacatgcc attacgcgga atcgcttcta
     1921 tgcactgttc tgccaacgta ggtaaagatg gtgatgtagc tgtattcttc ggactttcag
     1981 gaactggtaa aactactttg tcggctgacc caaaacgtta cctgattggt gatgatgagc
     2041 acggttggga taacaacggt gtatttaact acgaaggtgg ttgctacgcg aaagtaattg
     2101 atttggaaca agacaaagaa ccagatatct ggcgtgctat caaacgcgat gctttgttgg
     2161 aaaacgtaac tgtattggct gacggaactc ctgatttctc tgcagctgct tctaaaacag
     2221 aaaacacccg cgtttcttac ccaatctatc atatcaacaa aatcgttgct ccttcacgcg
     2281 caggacacgc cagcaaaatc atttatttgt cggctgacgc ttacggtgta ttgcctccgg
     2341 tttctatcct tgacgagcat tcagcacaat atcacttcct ttgcggttat acttcaaaat
     2401 tagccggaac tgagcgtggt atcactgaac ctcaaatgtc tttctctcct gcatttggtg
     2461 aagcgttcct tacattgcac ccaactatgt atgctaaaac actcgtaggt aaaatgaaaa
     2521 aacacggagc aaaagcttac ctggtaaata caggctggaa cggaacagga aaacgtattt
     2581 cgttgaaaaa cacccgtgct atcattgatg ctatcatcga cggtacaatc gaaaatgttg
     2641 aaacaacaaa tatccctgta atgaacctgg ttgttcctaa gtcaatcaac ggttgcgata
     2701 ctgaaatcct tgacccacgc aatacttatg cttcggcaga agaatggact gttaaagcaa
     2761 aacaactggc tgcgaaatat attgctaact ttgagcaata ttgcgataat gccgatgcta
     2821 ttgcgttgaa agtttcagga ccacaacttt aaaaagaggc aataaagtaa gatgtaagta
     2881 gctttttgct aaaacaaata gaaaagagct gttcgataat tttcggacag ctctttttgt
     2941 gtgtaaatat tttgtacgtt gatatcgaat cagattattc cttgtgcttc tttgttggaa
     3001 taatataaag cggtatcgtc gttttccgca gtacttcttc cacctcgctt cccataatta
     3061 tattttcaag ccatttccgg ctgtgtgttc ccataacgac cagatccacc tccaacgctt
     3121 ttgctgtgct taagattgtt ccgggaatat caacactgtc tttcaacact gttttgattg
     3181 atacatctcc aaggtgcttt ttcaacttat ccagaaattc ctgggttgat tttcttaaat
     3241 cagaactaac ttccacctgc aattcccgca tatatgaata gcctgaataa taaaccggat
     3301 gttctgatat aacatgcagc aatattgttt cagcattcat agctttagcc atcgaaaatc
     3361 ccttctctgc aattgtctgt gcagtttcgg cataatctat tgcaatcagt acttttttaa
     3421 tcatagttgt tttcatgttc gttaagtttt aaagtcattg ttgtaaaatt cttcacggat
     3481 aaatgccaat gtgtcaatca attcaaaact gctctttcat attgttataa caaaattaga
     3541 agcgtttttg attataaaac cacacatttt aatagaaaaa agaatgacct tatctcaata
     3601 aatctttctc caaaacaatt agacaactaa aaaataaagc gggctattac ggaaaattcc
     3661 gcacagcccg ctctttatca gtttgcaacg accaaaccta aagaaaacat gtttatttta
     3721 atggtccgaa tgtgtatcca cgggattaag cattcggatt ttaccagcgt atgactacct
     3781 tacctgcagt aatttatttc cagcgttcca gacgtttaag gccccgtgaa aacaaccaag
     3841 ccataaagcc cgaatgtcca ccttctttca ttttcatccg gcaatgttcc tgaaactcac
     3901 tgacggtacc gttaaaggta aactcaccat tttgataaca ataactgcaa tacttttcgc
     3961 tcttactgcc gtcggcattt gttccgcctt cattaggatc tttacttagc ggcatgccac
     4021 aactctgaca catttgtttt gaattcataa attttagaat tttgtttgtg attattttca
     4081 atacaggtca agacctatcc ttgcgcctgt aaaaatacga aacaaactaa acaaggccta
     4141 tgcttttccc aattattttt aagtgattca catctcacaa gctaccaact cctttcattg
     4201 ttttgaaagc aacattattt caaaacaatc catagaactt caatttatgt ttctatgtaa
     4261 aaattcgcat tttaaatata taagcatcac ttagattaaa tcataactaa agtggttcaa
     4321 attattgcca attgccatat ttttatgcat ataatttgat atatgaaagc aaatggacgt
     4381 ttaattaaac gcccaaacac gttaatgtat attaatatat gtatatttat gttatatatt
     4441 gactgtcatt gatttaatgt atattatcaa aaataaatta atattgacag ttgtagcatt
     4501 aattgttaca catcagaagc ttttattaag ttgaaagcaa ttaaatctat ttcgttaata
     4561 gatactaatc agccttttta agttaaaccc agttatctgc attaatagaa acgatcgaaa
     4621 ttcaaaaggc atagttaaat tacgagttta tttgagcctt acgtgtagta tttaatacta
     4681 cgtttaagaa aaaaccactt taaatgaaaa tatattacat ttgctgttca catttaaaaa
     4741 acggaattcc tatgtaattt aattagttgg tgatcaggtt gattttctat tattttagtc
     4801 atagttatga gataagtttt agaatcaagg ataagcaata actccctata tcatagtatc
     4861 aatttaaaac ctgaatttat gttacctacc gaaaatctaa tacaagaaca caaaacgatt
     4921 attgaaattc taaatattac caacaaaatt gcagagaata tcaagcaaaa aaaagttttt
     4981 tatacaatgg atattgagaa gatagtcgat ttcctaacag gtttttggga taaatgccat
     5041 aatgaaaaag aagaaaaagc tctttacccg gaactaattt catccaggat tcaaattgaa
     5101 gataattcta ttgcaggtat ttccaatgaa catgctatgg ggagaatcta tatcaaagag
     5161 atgagctaca gtattgtgaa ttgtaaaatg ggaaatcctt tttcatgcga gaaactcgcg
     5221 gactgtttga taaactattc aaatctattg cgtagtcata ttcaaaagga ggaagaagtt
     5281 ctttttccaa tcataaacca aaccttgact gataaaaaac aaagggagat ttt
//
LOCUS       DATDNM010000232         2064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_456626, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000232 DATDNM010000000
VERSION     DATDNM010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456626"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..373)
                     /locus_tag="VI413_03995"
     CDS             complement(8..373)
                     /locus_tag="VI413_03995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913815.1"
                     /translation="MRNRLLSSSITSITVKLQRSFLILLSICLFACKDDFFETAIPSW
                     LGASIYEQLQTGVTDSSGVKHTFNVYTKLIDDIGYDEVLKKTGSKTVFVADDNAFALF
                     FQIMRQLGTGIWFFLKKSL"
     gene            complement(725..1249)
                     /locus_tag="VI413_04000"
     CDS             complement(725..1249)
                     /locus_tag="VI413_04000"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6913816.1"
                     /translation="MIPTSIQNLNRLIIEKAFIEHKVHLTYFVYSRVHSLQQAEDIVQ
                     DTFLRVLEYDKAILTQTIRSLLFFIATNIVTDLMRSSIRRKMINDPDALFANEKSYNN
                     VDSYIYTQELMNLETTFADRLSGKRKQVYLMSRFDDLSAHEIAQKLSISSRTAEGHLF
                     TSRREIRSSIRLCI"
     gene            complement(1835..>2064)
                     /locus_tag="VI413_04005"
     CDS             complement(1835..>2064)
                     /locus_tag="VI413_04005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009038058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase"
                     /protein_id="HEY6913817.1"
                     /translation="SFNYLKDIYFRVLVTKGAVCHFQYSFDNKKFITVGEPFTARQGK
                     WIGAKIGYFAVKPYNTGNRGWIDIDWFRVTK"
BASE COUNT          710 a          390 c          316 g          648 t
ORIGIN      
        1 cagattatca tagagatttc ttcagaaaga accaaatgcc agttcccaat tgccgcatta
       61 tctgaaagaa aagagcaaag gcattatcgt ctgcaacaaa aacagtttta cttcctgttt
      121 tcttcagtac ctcgtcgtaa ccaatatcgt caattagttt agtatacaca ttgaatgtat
      181 gcttcactcc actactatcc gtaacacctg tttgaagttg ttcataaata ctcgcaccta
      241 accatgacgg tatggcggtt tcaaaaaagt catctttaca cgcaaataag catatagata
      301 acaaaatcag aaatgatctt tggagtttta ctgtaataga tgtaatagaa gaggataaca
      361 atctatttct catttttgca atttttttat tcaatgaatt ggattttaag tcaatcgatt
      421 aatgcaacta ctattttcaa acaaggtact tccacctcac ttttcgtttc atacaatctg
      481 tttcacaaga gtaataagca tttttcgaat acaaaactat ttaatatatc acaatatctc
      541 ccccgaaaag gaggttattt ttgtaccaca ttataaactg aaactaatat ataagtaaat
      601 aaagacagcc attaaaactt cagaatgcat tttataacat atgttcatct aatgaacgaa
      661 taggcagact gtatcactct aaaaatttaa ccacaagctt aaccgtacat ggaaaaccaa
      721 caccttaaat acacaagcga atcgatgaac gtatttctct gcgacttgta aaaagatgcc
      781 cttcggctgt tctactacta atggaaagct tctgtgcaat ttcatgagca ctaagatcgt
      841 caaaacgcga catcagatac acctgctttc gtttccctga aagtcggtct gcaaacgttg
      901 tttctaagtt catcaactct tgtgtataga tataagagtc tacattgtta tatgattttt
      961 cattcgcgaa taatgcatcc ggatcattta tcatctttct gcgaatgctt gaacgcatca
     1021 agtctgtaac aatattggtg gctataaaaa acaataatga acgtattgtt tgagtaagaa
     1081 ttgctttatc atattcaagc actctcagaa atgtatcctg tactatatcc tctgcttgct
     1141 gtaaactatg tacccgacta tatacgaaat aagtcagatg aactttgtgt tcaataaatg
     1201 ccttttcaat tattaatctg ttcagatttt ggattgacgt tggtatcatg aggtgattct
     1261 aatagtacta acacgttaat gatatatact ctggtaaagt cagaataatt ttcgatgcaa
     1321 tattaatgta aaataaactg ccgacacgaa aaaaaatatc aagaagcgtt tcagtttata
     1381 aattggaaca atatttagac agtgataccc caaaagaaac tcgtgtataa ttaaatctgg
     1441 ctgtctgaat aaattttcaa attagcaatt acggcaaaag agatttatca ataagtacat
     1501 tgttttcgga tttaagaaca cattacaatt gcctacatgt tttataaata caaataaacc
     1561 atccttaaaa atagagttta tccgcatgat gacctgttgt actgaattgg aaatactgga
     1621 gagtagctct gatatcttcg tagcaataac tgataattta agagcgtagc tctaccattc
     1681 ttaatgaatt gaaagatacc accgtaaact tgtcttattt tccgtaaaat atacttcaca
     1741 actaaggttg caagacgctg cccctcaaca ccttcaaaaa atggaaaatg atatttactg
     1801 acggttgccg tgcgtataat cataaaataa caaactattt tgttacccga aaccaatcaa
     1861 tgtcaatcca gcctcgattg ccagtgttgt agggtttcac agcaaagtat ccgattttgg
     1921 ctccgatcca tttaccttgt cgggcggtaa acggctcacc gacagtaata aatttcttgt
     1981 tgtcgaaact gtactgaaaa tgacaaacag cccctttggt taccaacacc cgaaaataaa
     2041 tatccttcag gtaattgaat gaac
//
LOCUS       DATDNM010000233         2243 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1952005, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000233 DATDNM010000000
VERSION     DATDNM010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1952005"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..542)
                     /locus_tag="VI413_04010"
     CDS             complement(<1..542)
                     /locus_tag="VI413_04010"
                     /inference="COORDINATES: protein motif:HMM:NF019292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside recognition domain-containing
                     protein"
                     /protein_id="HEY6913818.1"
                     /translation="MALPKAVKTIWWLLKIILPVSLLVSFLQYWGVIAQIANLLAPVF
                     SIIGLPGESAVVFISSIFLPLYGPIAIISSLPLEIREITILAIMCLISHNLIVETAIQ
                     KKTGSSALAIFLVRIIASFAAAYILNILLPEHLGEKHIVQKNIIFSSLPAMVSNWIIN
                     AGWLSMKIAVIITGLMVLQN"
     gene            complement(797..1240)
                     /locus_tag="VI413_04015"
     CDS             complement(797..1240)
                     /locus_tag="VI413_04015"
                     /inference="COORDINATES: protein motif:HMM:NF021438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HEY6913819.1"
                     /translation="MKKILLSFAILIAFSMSGLAQADKIVGKWKTIDDKDGSEKSIVL
                     IFKATNGKYYGTIEKLFKNPNGICSECEGANKNKPNLGLRIINNLVEEDGKLTGGTIL
                     DPKNGKVYKCNISLDPKTGNLNVRGSLDSGGWIGRSQTWIRAKQT"
     gene            1404..1889
                     /locus_tag="VI413_04020"
     CDS             1404..1889
                     /locus_tag="VI413_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEY6913820.1"
                     /translation="MRTSFISDVNELEAIINQCNICFVGMVEKDGTPYVIPMNFGYSN
                     HEIVLHSGPQGKHLSLLEMNNRVCVTFCTEHKLVYQHPDVACSYSMTSKSVLCKGAVK
                     FVDDMTEKTELMNLLMKNYTDRPFKYSTPALMNVKVWRVSIDEMTGKSFGQNFKQSSD
                     L"
BASE COUNT          714 a          342 c          387 g          800 t
ORIGIN      
        1 atgttttgca ataccattaa acctgtaata atcacagcga ttttcataga caaccaacct
       61 gcatttatta tccagttgct gaccattgct ggcaagctgc tgaaaataat atttttctgg
      121 acaatatgtt tttcgcctaa atgctccgga agtaatatat ttagaatata ggcagctgca
      181 aatgaggcta ttattctgac taaaaatatt gctaatgctg aagagcctgt ttttttctga
      241 attgctgttt ctacaatcaa gttatgtgaa attaaacaca taattgcaag aatcgtaatt
      301 tcacgtattt ctaacggtaa agaagaaata atggctatag gtccgtaaag tggaagaaaa
      361 atgcttgaaa taaaaactac tgcagattct cccggtaagc ctataattga gaagactggt
      421 gctagtaaat ttgcgatctg ggctatgact ccccagtact gtaggaagct gacaagcaaa
      481 ctaacaggta aaatgatttt gaggagccac caaattgttt tcacggcttt ggggagtgcc
      541 atttttgtgc tgttgagtag tctctcagta gtgttcatgg gctattgtgt ataaaaacaa
      601 gaaaggttgt ctcacgacaa cccaatcttt tagttaacct taaatctaat accatgaaaa
      661 acacagtgca aagataatgg ctatttttat gttgtacaac atgtttatcg gttattttta
      721 ttgtattaat attatttaac gctttagtcg ctgtagtatt tgatatttgt tgtgtagctt
      781 atttattatc aattgattat gtctgttttg cccggatcca tgtttgagag cgtccaatcc
      841 aaccaccact atccaacgat ccccgtacgt tcaaattgcc tgttttggga tcaagactga
      901 tattgcattt gtaaacttta ccatttttgg ggtctaaaat tgttccacca gtcagctttc
      961 catcctcttc cactaaatta ttgataatcc tcaatcctaa atttggtttg tttttatttg
     1021 caccttcaca ttcagagcaa attccatttg gatttttgaa tagtttctct attgtaccat
     1081 aatattttcc attcgtagct ttgaaaatta atacaattga tttctcgctt ccgtctttat
     1141 catctatggt tttccatttt ccaactatct tgtcagcctg agccagacct gacatactga
     1201 atgctattaa aattgcaaat gacaggagta tttttttcat atagatatat ttaaaattta
     1261 gacaaagata tgaataatcg gcacaattgc aacaattgtg tgcagaaatg atttcaactg
     1321 aaacaaaagt aagttgtgaa aatatataaa tagaattgca acccgttttt tttttagtat
     1381 ttttgtaaat aaaaaatgat catatgagaa ccagttttat tagcgacgta aatgagttgg
     1441 aagccattat taatcaatgt aatatatgtt ttgtgggtat ggttgagaaa gatggtacgc
     1501 cctatgtaat tcccatgaac tttggatatt ctaatcatga aatagttttg cattcaggcc
     1561 cgcaaggtaa acatttaagc ttactggaaa tgaataatcg tgtttgtgta acattttgta
     1621 ctgaacataa attggtatat caacatccag atgtcgcttg tagttacagc atgacatcga
     1681 aaagcgttct ttgtaaaggc gccgtaaagt ttgttgatga tatgacggag aaaacagaac
     1741 tgatgaattt gttgatgaaa aattatactg accgtccttt taaatattct actccagcgt
     1801 tgatgaatgt aaaggtttgg cgtgtaagca ttgatgagat gaccggtaaa tcttttggtc
     1861 agaattttaa acagtcatct gatttatagg tttttattct ttttatatca aaagtttatt
     1921 gttcaaaatt tatatagaga taaatattgg tgactttatt tacaaattca ggtttaaatt
     1981 tattatttga cgaactgaga tataatggca gaaatttctt ttggcatagc tattgaaaca
     2041 ataatattac attttgtaat taaaactata agttgcttaa tataagagat atatagttct
     2101 tgccgaaatg aaaagaaaat atataaattt gatttatgcc aaattggcag tttaaatacc
     2161 gtttagtaat gagtaatcct tttgataatt ttttttctga agatatgcct ggctctacag
     2221 agatgtttcc aataatttcg ctt
//
LOCUS       DATDNM010000234         2168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_990642, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000234 DATDNM010000000
VERSION     DATDNM010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_990642"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..248
                     /locus_tag="VI413_04025"
     CDS             <1..248
                     /locus_tag="VI413_04025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913821.1"
                     /translation="YKIVFDNRLTKNRISIGEAYSWFVTHFDNIDYSLRRIPTAYIVN
                     NDDWDFYSFFECTCNNKGIPIRVFQEEGAAMKWLERF"
     gene            935..2167
                     /locus_tag="VI413_04030"
     CDS             935..2167
                     /locus_tag="VI413_04030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009318946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase-maturation protein"
                     /protein_id="HEY6913822.1"
                     /translation="MKKTIAFNPLSMPTYVMAKPNGSSCNLNCSYCYYLEKAKLYENR
                     NKLQMSDETLEKYIESYIQAQPVPEVLFTWHGGETLLRDISFYRKALALQKKYGRGRN
                     IDNSLQTNGTLLTDEWCKFFKDNNFLIGISIDGPEHCHDVYRKNKGGKETFRQVMKGI
                     ELLQKHGVEFNTLSVINNYNVDYPLEIYNFFKEIGSRYMQFAPIVEKITQSRPDGLNL
                     LPPDGEGSDDAVLAPWTVDAKKFGEFYITIFDEWVRKDVGQYYFQLFDAALAGTVGEM
                     PGTCIFGETCGHATVMEFNGDMYACDHYVFPEYKIGNIKTHSIYEMVFSEKQLRFGVD
                     KRDTLPTQCRQCEFKRLCNGECPKNRIISTQTGEPGLNYLCEGYYAFWKHSKPYMEFM
                     ANELFFKRSPANVMSAQI"
BASE COUNT          647 a          391 c          483 g          647 t
ORIGIN      
        1 aatacaaaat agttttcgat aatagattga caaaaaacag aatttcaatt ggagaagcat
       61 attcttggtt tgttactcat tttgataata ttgactactc attaaggcgc attccaactg
      121 cctacattgt aaataatgat gattgggatt tctattcctt ctttgaatgt acatgcaata
      181 ataaaggtat tccgataaga gtatttcagg aagaaggtgc agctatgaag tggcttgaac
      241 gtttttgacg gattgtagaa atcttgtatt tttattaggt taatataatg ctgttttaaa
      301 actggttgaa aattgaataa tcataaggaa aaaatacttt caactaatcg atattttgtg
      361 tttgtcatat tcctttatac atctcaatac ttttgagtaa aatgaagaag gcaaggacta
      421 agtgtttgaa acagaagata tccacctgct gtgatcacca tttaaaagct cataactccc
      481 tgataatgaa aatttatcag ggagtttttg tttgtgtgcg gattaaaatt cccggactcc
      541 cgaatcaggg tgcctttatc gctcgcatca gacccacctc aacgctcact tacgtacccc
      601 tgatgcgagc gatagcgtac ctctgaagga atcttcgttt ctggatagtc taagacagca
      661 attcaaagtc tctttttaaa cctccgggaa tctactaagt tcatgctaga taaactgact
      721 acccccgaaa agcttttgct ttccgttcta tttactctta tagcaaatgg ggcctgttcc
      781 tactaataat ccgttcccgg ttaatgttgt ttgttgtttg tattgcggtt attgctgcaa
      841 ttcatatctt tgcaggctca acattcattt tgaaaataag ctgcggatag ctgtgcggtt
      901 attgtgcaac acctgtaatg gaaaacgatt atttatgaag aaaactatag catttaatcc
      961 actgtcgatg ccgacgtatg taatggcaaa accgaacggt tcgagttgta atctcaattg
     1021 ttcgtattgt tattacctgg aaaaggccaa gttgtatgag aacaggaata agctgcaaat
     1081 gagcgacgaa acgcttgaaa aatatattga gagttacatt caggcgcaac cggtgccgga
     1141 agttttgttt acctggcacg gtggcgaaac gctgttgcgc gatatttctt tttaccgcaa
     1201 agcgctggct ttacagaaga aatatggaag gggacggaac atagataact cccttcagac
     1261 caatggcacc ttgctgactg acgaatggtg caagtttttc aaagacaata attttctgat
     1321 cggtatttct attgatggcc ctgagcattg ccatgatgtt taccgtaaga ataagggcgg
     1381 aaaagaaact ttccggcagg taatgaaggg gattgagctg ttgcaaaaac acggggtaga
     1441 gttcaatacc ttgtcggtta ttaataacta caatgtggat tatccgcttg aaatctacaa
     1501 ctttttcaag gaaattggca gtcgctatat gcagtttgca cctattgtgg aaaagataac
     1561 gcagagccgc ccggatggat taaatctgct tccgccggat ggtgaaggaa gcgacgatgc
     1621 ggtattagcg ccatggacgg tggatgcaaa gaagtttgga gaattttata ttactatttt
     1681 tgacgaatgg gtacgtaaag atgtcggtca gtattacttc cagctgtttg atgccgcgtt
     1741 ggccggaacg gtgggggaaa tgccaggaac ctgcatattc ggcgaaacct gcggacatgc
     1801 cacggtgatg gagtttaatg gcgatatgta tgcctgcgac cattatgtat ttccggaata
     1861 taaaatagga aatatcaaaa cacattcgat ttatgaaatg gtgttttctg aaaaacaatt
     1921 gagattcgga gttgataaac gcgatacgtt gccaactcag tgccgtcagt gcgagtttaa
     1981 aagactttgc aacggcgaat gtccgaaaaa cagaataata tccacccaaa cgggtgagcc
     2041 gggcctgaat tatctgtgtg aagggtatta tgctttctgg aaacattcaa agccttacat
     2101 ggaatttatg gccaacgagc tgttctttaa acgttctccg gctaatgtga tgagcgccca
     2161 gatataga
//
LOCUS       DATDNM010000235         4475 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1738311, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000235 DATDNM010000000
VERSION     DATDNM010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4475
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1738311"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1586)
                     /gene="glmS"
                     /locus_tag="VI413_04035"
     CDS             complement(<1..1586)
                     /gene="glmS"
                     /locus_tag="VI413_04035"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016662822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEY6913823.1"
                     /translation="MCGIVGYIGNKQAYPILIKGLQRLEYRGYDSAGIALLHNDNLNV
                     YKAKGKVSDLVRFAEQQDIQGTIGIAHTRWATHGEPNQVNAHPHYSQTEELAIIHNGI
                     IENYAVLKKGLKAHGYTFKSQTDTEVLIQLIEYVKKSNNVDLTKAVQLALNQVVGAYA
                     IAVIEKGHPDVIVAARKGSPLVVGIGEDEFFLASDATPIIEFTNKVVYVGEEEIVTLE
                     RGKELKIKTIGDVEKTPEIKELEMTLSQLEKGGYPHFMIKEIFEQPKTLSDSMRGRVS
                     LDENEIKLSGFIDNKEKFLNAKRIIITACGTSWHAGLIGKYAIEEFARIPVEVEYSSE
                     FRYRKPVIHKDDIVIPISQSGETADTLAAVDLAKSHGAFIFGICNVVGSSIPRNTHSG
                     CYTHAGPEIGVASTKAFTAQVTVLTMLALLIGKEKGTLDNEQYLKTVAELGRIPEKIS
                     HLLKQDTVIAEFAKTFTYAQNFIYLGRGYNFPVALEGALKLKEISYIHAEGYGAGEMK
                     HGPIALVTPELPVVCVATQG"
     gene            complement(1637..2863)
                     /locus_tag="VI413_04040"
     CDS             complement(1637..2863)
                     /locus_tag="VI413_04040"
                     /EC_number="2.6.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005793370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEY6913824.1"
                     /translation="MALANENYLKTPEIYCFDEIEKRVNAFKVLHPNAKIIRLGVGDV
                     TRPLPNEVVVAMHKAIDEMSQPDTFRGYSPPQGYDFLIEKILKEYRSSGIVIDKDSIF
                     VNDGAKSDIGNIGHVLGRDNIIAIADPVYPVYENSTIMSGRAGVMTEDQKWSNVVYLR
                     CTEDTGFVPELPTEKVDVIYLCNPNNPTGTVLTKTDLKKWVDYAIEHQSIIIYDGAYH
                     AYVNEPDVPRSIYEIKGAKKVAVEVRSYSKTAGFTGLRCGYSVFPPELMVYTKMGDEV
                     PLIKLWSRRNANYTNGVSYVVQRGAEALYSRKGKAETQELVNYYLTNASLIRNELLSI
                     GFEVYGGVSSPYVWFKTAYNQSSWKFFHQLLYENHIIGTPGVVFGSSGDGYMRFTGFS
                     SREDILLALERIRKGV"
     gene            complement(3045..4040)
                     /locus_tag="VI413_04045"
     CDS             complement(3045..4040)
                     /locus_tag="VI413_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhdH/YhfP family quinone oxidoreductase"
                     /protein_id="HEY6913825.1"
                     /translation="MQEIQYKAFVVNEIDGKFVRSIQTLSTANLPAGDVLIQVHYSSV
                     NYKDALSATGNKGVTKKYPHTPGIDAAGVVVCSENDQYEVGDKVIVSGNDLGMNTPGG
                     FGQYIRVPAEWVVKLPEGLTMKEAMIIGTAGFTAGISLLRLNELVKPADGKVLVSGAT
                     GGVGSVALSLLSKLGYQTIAVSGKESEYDFLRSLGAAEIISRGEFQQVDKRPMLSAQY
                     AGAIDTVGGPILENILKALQPLGAVTTCGSVSATQLNMTVFPFILRGISLIGISAQNY
                     PMNLRRVLWEKLSNDWKPEHLLNLYNEIQLSDLETTLESILRGELKGRTIVRMTD"
     gene            complement(4152..>4475)
                     /locus_tag="VI413_04050"
     CDS             complement(4152..>4475)
                     /locus_tag="VI413_04050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEY6913826.1"
                     /translation="LTNGSKIVGKIFADSDFRIDGEVEGTITCNGKVVIGQKGFLKGS
                     ISCVNAEIIGTVEGDIVVSETLSLRGSAIIKGDVKTKVLMVEPNAVFNGTCSMKDPTS
                     TSAAE"
BASE COUNT         1366 a         1004 c          702 g         1403 t
ORIGIN      
        1 tcgccctgcg tggccacgca gaccaccggc agttcgggag tcaccagcgc gatgggcccg
       61 tgcttcattt cgcccgcgcc gtagccttcg gcgtggatgt agctgatttc cttcagtttc
      121 aaagcacctt ccaaagcaac cgggaaatta taaccacgac ctaagtaaat aaaattctga
      181 gcatacgtaa atgtttttgc aaattcagca attacagtat cctgtttcaa caaatgacta
      241 atcttttcag gaatgcggcc gagttcggca actgtcttca gatattgctc attatccaac
      301 gtaccctttt cttttccgat aagcaacgca agcattgtca atacggtaac ctgggctgta
      361 aatgcttttg ttgaagcaac accaatctca ggaccggcat gtgtataaca accggagtgt
      421 gtattacgtg gaatagatga accaaccaca ttacatatac cgaaaataaa tgcaccatgc
      481 gattttgcaa gatcaacagc agcaagtgta tcagctgttt cacccgattg tgaaatagga
      541 attacaatat catctttatg aataaccggt ttacggtaac ggaattctga cgaatactcc
      601 acttcaaccg gaatgcgtgc aaattcttca atagcatatt taccaatcag tccggcatgc
      661 catgatgttc cgcaagcagt gataataatt cgttttgcat tcaggaattt ttctttattg
      721 tcgatgaatc ctgataattt tatttcgttt tcgtccaaac taacacgtcc acgcatgcta
      781 tcgcttaacg ttttaggctg ttcgaaaatt tctttaatca tgaaatgcgg ataaccaccc
      841 ttttctaatt gactcaaagt catttcaagt tccttgatct caggtgtttt ttcaacatct
      901 ccaatcgttt tgattttcaa ttccttacca cgttccaacg taacaatctc ttcctcgcca
      961 acataaacaa ctttattcgt aaattctatg attggtgttg catctgaagc taagaaaaac
     1021 tcatcttcgc caattccaac caccagcggg ctacctttac gagcagcaac tataacatct
     1081 ggatgtcctt tttcgattac agcaattgca tatgcaccta caacctgatt caatgccagt
     1141 tgaaccgctt ttgtcaaatc aacattattt gattttttca catattcaat caactgaatc
     1201 aaaacttcag tatctgtctg acttttaaaa gtgtaaccat gtgccttcaa tccttttttg
     1261 agaacagcat aattttcaat gataccatta tgaataatgg ccaattcttc agtttgtgaa
     1321 taatgtggat gcgcatttac ctgatttggt tcaccatgcg ttgcccaacg ggtatgggca
     1381 ataccaattg taccctgaat atcctgctgt tcggcaaaac gaactaaatc cgaaactttt
     1441 ccttttgctt tataaacatt gaggttatca ttatgcaata atgcaattcc ggcgctgtca
     1501 taccctctgt attcaagtcg ttgaagacct ttaataagaa tgggataagc ttgtttgttc
     1561 ccaatatatc ctacaattcc acacatattc ttttctttgt ttgtatgata aatactaatt
     1621 taaaaatagt aataaattaa actccttttc ttattctttc caatgcaagt aaaatgtctt
     1681 cccgactgct aaaacctgta aatcgcatat atccatcgcc cgaagagcca aaaacaacac
     1741 ccggagttcc aattatatga ttttcgtata acaattgatg gaaaaatttc catgaagact
     1801 gattatatgc tgttttaaac caaacataag gggagcttac ccctccgtac acttcaaaac
     1861 caattgaaag taattcattt cttataagcg atgcgtttgt cagataataa tttactaact
     1921 cctgcgtttc ggcttttcct tttcgcgaat acaatgcttc agcaccccgt tgtacaacat
     1981 acgaaacacc attagtataa tttgcgttgc gtctactcca aagttttatc aacggtactt
     2041 catcacccat ttttgtgtaa accatcaatt cgggtggaaa aacagagtaa ccacaacgaa
     2101 gtccggtaaa tccagctgtt ttggaatagc ttcgtacttc tacagccact ttctttgcgc
     2161 ctttaatttc ataaatacta cgtggcacat ccggttcatt tacataagca tgatatgcgc
     2221 catcatagat tataatactc tggtgttcaa tagcataatc gacccacttc ttcagatctg
     2281 ttttagtcaa aacagttcca gtaggattat tcggattaca caaatagata acatccacct
     2341 tttccgtcgg caattcagga acaaaaccag tatcttcagt acaacgcaga taaacgacat
     2401 tactccactt ctggtcttca gtcattacac ctgccctacc actcattatg gttgaattct
     2461 catatacagg ataaacagga tcagcgatag caatgatatt gtcgcgccct aaaacatgcc
     2521 ctatatttcc aatgtccgat ttggcaccat catttacaaa gatactgtct ttatcaatta
     2581 caatacccga tgaacgatat tcttttaata ttttttcaat caaaaagtca taaccttgtg
     2641 gaggactgta gcctctgaaa gtatcgggtt ggctcatttc atcaattgcc ttatgcatgg
     2701 caactacaac ttcattaggt aagggacggg taacatcacc gactcctaaa cggataatct
     2761 ttgcgttggg atgtaatact ttaaaggcat taacacgctt ctctatttcg tcaaaacaat
     2821 agatttcggg agtttttaaa taattctcgt ttgctaatgc cattcgtgag aagggttata
     2881 aaaatgaggt tgaaagtcaa tcaaaataaa gtgcaaaatt gcgctttttt tttcattaat
     2941 aaaagcgttt tgtccaaaaa gattcgaact ttgacacaaa ttgaaactat tttcgttaat
     3001 caagataatg gtttactctc tgtgcaaaat tacaaagcta tatatcagtc agtcattcta
     3061 acaatagttc tacctttaag ttcaccccta agtattgact ctaaagtagt ttctaaatca
     3121 gaaagttgta tctcgttata gagattaaga agatgctccg gtttccagtc attacttaat
     3181 ttctcccaca acacacgacg caaattcatg ggataattct gcgctgaaat accaattaac
     3241 gatatccccc gtaaaataaa cggaaacaca gtcatgttca gttgcgtggc cgaaacgctt
     3301 ccacaagttg tcacagctcc taaaggttga agtgccttca ggatattctc caaaataggc
     3361 ccccctaccg tatcaattgc acctgcatat tgcgccgaaa gcattgggcg tttatctact
     3421 tgctgaaact cacctcttga gattatttct gcagctccca aactacgcaa gaaatcatac
     3481 tccgattctt ttcctgaaac tgcaattgtc tgataaccga gctttgaaag caatgaaaga
     3541 gcgacagacc caacaccccc ggtagcacct gacacaagta cttttccatc agcgggtttt
     3601 accagttcat ttaaacgcaa taaagagatt ccggctgtaa aacctgctgt accgataatc
     3661 atggcttctt tcatggttaa accttccgga agttttacaa cccattcggc aggaacacga
     3721 atatattgtc cgaaaccacc cggagtattc attcccaaat cattaccact tacaatcact
     3781 ttatctccaa cttcatattg gtcattttca gaacatacaa caacacctgc agcatcaatt
     3841 cccggtgtgt ggggatattt tttagtcaca cctttgttac cggtggcaga aagtgcatct
     3901 ttatagttaa ctgatgaata atgaacctga atcaaaacat ctccggcagg taaatttgct
     3961 gttgaaagtg tttgaatact tcgaacaaat tttccgtcaa tctcattaac tacaaatgct
     4021 ttatattgaa tttcttgcat aataatttta ttaaatcatt ttaaacaaaa acgttgaagt
     4081 gtgtatactt caacgttata atatatcaaa aactgcaaat ttgcattttt tatcttctaa
     4141 aaaatttctt tttattcagc ggcagaagta cttgttggat ctttcataga acaagtccca
     4201 ttgaagactg cattaggttc aaccatcaag acctttgttt tgacatctcc tttaataatt
     4261 gctgacccac gtaacgataa agtttcactc acaacaatat caccttcaac cgttccgata
     4321 atctctgcat ttacacacga aattgagcct ttcagaaaac ctttttgtcc aatcacaact
     4381 tttccattac aagtaatcgt tccttcaact tcaccatcaa ttctaaaatc actgtctgca
     4441 aagattttac caacaatttt acttccatta gtaag
//
LOCUS       DATDNM010000236         4568 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1845228, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000236 DATDNM010000000
VERSION     DATDNM010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4568
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1845228"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..840)
                     /locus_tag="VI413_04055"
     CDS             complement(<1..840)
                     /locus_tag="VI413_04055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan acetylesterase"
                     /protein_id="HEY6913827.1"
                     /translation="MKKTVFTLIASALLLNVNAQKNEWRKNFSFGTVKTVQKIIQVDT
                     TAKYTDVKGYGLTTFGPLNTSSKGAKTSFIASEKPFYFSVQLPEGHYKVTLTLGGNAK
                     GSSTTVKAESRRLMCENLKTEGGKTVIKTIIVDVRTPRIDDSTKIKLKPRELKYINWD
                     NKLTLEFGGGKPCVSAIEIQKADELPTIFLAGNSTVTDQEYEPWASWGQMFPNFLKPN
                     VVVANFAESGETLLAFKRENRLKKILSLMKRGDYLFMEFAHNDQKPGGNHLDAFTTYK
                     AELK"
     gene            complement(855..1079)
                     /locus_tag="VI413_04060"
     CDS             complement(855..1079)
                     /locus_tag="VI413_04060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913828.1"
                     /translation="MSPGHSEVCLSQINLSARHNEVIIQVFISPALKKDNYTLKIEVP
                     GEHPAWTDKSKTIYGSTDDFVVLKDVYELK"
     gene            complement(1195..2310)
                     /locus_tag="VI413_04065"
     CDS             complement(1195..2310)
                     /locus_tag="VI413_04065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6913829.1"
                     /translation="MNLHNEANSVPLQGLGVNSPLGVGGLLILIVLTIVSLPVFAKKN
                     PLAASEKKMGAYLMVYFKDDTHSLYFALSKDGYSFTDVNNAKPIMAGDTISEQKGIRD
                     PYIMRGPDGMFYMALTDLHLFAQKLGYRTTEWERDGKEYGWGNNHGIVLLKSPDLIHW
                     THSVLRVDKGFPELNNIGCAWAPELIYDQARDRIMMYFSMRFGNGKCKVYYTYMNKDF
                     TAMETLPQPIFEYPEGKEYIDADITKVGNKYHMFICSHNGGAHIEQAISDSINSGYQL
                     IQKRCDGEKSGCEAPTIYKRIGENKWVLIYDIYSIHPNNFGFSETSDFDSFTYLKHFN
                     EGVMKRTNFEIPKHPAVIQITKKDANRLAKRWGLKSY"
     gene            complement(2371..3933)
                     /locus_tag="VI413_04070"
     CDS             complement(2371..3933)
                     /locus_tag="VI413_04070"
                     /inference="COORDINATES: protein motif:HMM:NF015585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HEY6913830.1"
                     /translation="MKKTTFLLFLCFFVKNSLFADVKPAALFCEHMVLQRNVEIPVWG
                     TAWPKESVTVTLNGNAVSVKADANGNWMLKLPKQKGGGPYKMEIAGDNVQTFDDVYVG
                     DVWLCSGQSNMDMTVAKEDRYWCGVINEAKEVANANFPLIRVFDVDYTPNQYPQKNPV
                     GKWEICSPQTVGHFSAVSYFFAREIYQKYKIPVGLLTSAFGASTAETWISKEALEAHP
                     NLKPLLDAYTAKWDKFVADSATTMAKYRDEKVKFSGDLAAAQAAAGDVTAKKPKAPKN
                     PDPELDQHNPFVCYNGMIAPLVPYAIKGALWYQGESNGPSAKLYREIMETLIADWRSK
                     FSVGDFPFLYVQLANYGKPMAKPVEDGVMMTVREAQVQNLSVKNTGMAVAIENAGDQP
                     TNIHPKNKQAIGYRLGLIARANVYGEKVEYSGPMYKSYKVKGNTIELSFDHVGKGLVA
                     KDNKLTGFAICGEDKNWVSANAVIKGKKVIVSSSEVAHPVAVRYCWGTNPPASLSNKA
                     GLWAPNFRTDNW"
     gene            complement(4043..4357)
                     /gene="rhaM"
                     /locus_tag="VI413_04075"
     CDS             complement(4043..4357)
                     /gene="rhaM"
                     /locus_tag="VI413_04075"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008759851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0062192 - L-rhamnose mutarotase activity
                     [Evidence IEA];
                     GO_process: GO:0019301 - rhamnose catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HEY6913831.1"
                     /translation="MTRSAFKMFLKPGFEAEYEKRHNAIWPELSKLLKDAGVYDYSIF
                     WDKETNILFAVQKNNGEGGSQDLGSTEIVQKWWAYMADIMETNPDNSPVSIPLPEVFY
                     ME"
BASE COUNT         1200 a         1010 c          950 g         1408 t
ORIGIN      
        1 tttcaattca gctttataag tggtaaatgc atccagatga tttcctcccg gcttttggtc
       61 gttgtgtgca aattccataa acaggtaatc gcctcttttc atcaggctca gaatcttttt
      121 caatcggttt tcgcgtttaa aagccagcag tgtttcaccc gattcggcaa aattggcaac
      181 caccacattc ggtttcagga aattggggaa catttgtccc cacgatgccc agggctcgta
      241 ttcctgatcg gtaacggtag agtttccggc cagaaaaatg gtaggaagtt catcggcttt
      301 ttgtatctca atggccgata cgcagggttt tcctcctcca aattccaacg taagcttatt
      361 atcccagttg atatatttca attcgcgtgg cttcagtttt atttttgtag agtcatcaat
      421 ccttggtgta cgcacgtcga cgataatggt ttttataacc gttttaccgc cttcggtttt
      481 caggttttcg cacatcaacc ggcgcgattc ggctttcacg gtggtagatg accctttggc
      541 atttcctcct aaagtcaggg taactttata atgtccttcg ggtaattgaa cagagaaata
      601 aaacggtttt tcggaggcaa tgaaagatgt tttggcccct ttactacttg tgttaagcgg
      661 tccaaatgta gttagtccgt acccttttac gtcggtatat tttgccgtgg tgtcaacctg
      721 aataattttt tggacagttt taacagttcc aaatgaaaag ttctttctcc attcattttt
      781 ttgagcattg acattcaaca gcaatgccga agcaatcaaa gtaaatactg tttttttcat
      841 atttcttctt tcaactattt taattcatac acatctttca acacaacaaa atcatcagta
      901 ctaccatata tcgttttgga tttatcggtc caggccggat gttcgccggg tacctcaatc
      961 ttcagcgtat aattatcttt tttcagggcg ggacttataa aaacctgaat aattacttca
     1021 ttatgtctcg cagacagatt aatttgactc agacacactt cggagtgacc cggagacact
     1081 caggagtgac aaactatcac tcccgagtgc aattccaaca ctttagagtg ataaaccatc
     1141 actccgaagt gcaacgataa cagttctgag tgcttccaaa gcacttttat aatactaata
     1201 cgacttcaat ccccaccgtt ttgccaatcg gttggcatct tttttggtaa tttgtatcac
     1261 agccggatgc tttggtatct caaaattggt tcgcttcatc actccctcat taaaatgttt
     1321 cagataagta aaactatcaa agtcagacgt ttcactaaat ccaaaattgt taggatgaat
     1381 agaataaata tcgtagataa gtacccactt gttttcacca attcgtttgt aaatggttgg
     1441 tgcctcacaa ccactttttt caccgtcgca acgtttctgg attaactggt aaccgctgtt
     1501 gattgaatcg gaaatagctt gctcgatgtg cgcacctccg ttgtgcgaac aaataaacat
     1561 gtggtattta ttacccactt tggtaatgtc agcatcgata tactctttgc cttcgggata
     1621 ttcgaaaatg ggttggggaa gcgtttccat ggcggtaaaa tccttgttca tataggtata
     1681 atacaccttg cattttccgt tgccgaagcg catgctgaaa tacatcatga tgcgatcgcg
     1741 ggcttggtcg taaatcagct cgggcgccca tgcacagccg atgttgttta gttcggggaa
     1801 gcctttgtct acccgcaaaa cggaatgagt ccagtgaatc agatcgggcg attttagcaa
     1861 aacaatgccg tgattgttgc cccatccgta ttctttgccg tcgcgctccc actcggtagt
     1921 gcgatagccc agtttttgcg caaaaaggtg caaatcggtg agcgccatgt aaaacatgcc
     1981 atcaggaccc cgcataatgt agggatcgcg gatgcctttt tgctccgaaa tagtgtcgcc
     2041 cgccatgatg ggtttagcgt tgtttacatc cgtaaagcta tagccgtctt tgcttaacgc
     2101 aaagtacaaa ctgtgggtgt cgtccttgaa atagaccatc aggtacgctc ccattttctt
     2161 ttccgaagca gctaaaggat tctttttggc gaaaacaggt agggaaacga tcgtaaggac
     2221 gattagaata agaagacccc caacccctaa aggggagttt acccctaacc cctgaagggg
     2281 aactgagtta gcttcgttat gtaaattcat ttctttgctc atttattaat aaatatatta
     2341 gtaaaagtcc cctttagggg atttaggggt ctaccaatta tcggttctga agttaggtgc
     2401 ccaaagtccg gctttgttgc tgagacttgc aggtggattg gtgccccagc aatagcgaac
     2461 cgcaacggga tgagccactt cagaactgga aacaattact ttcttgcctt tgatgactgc
     2521 attagccgaa acccagtttt tatcctcgcc acaaatggca aaaccggtta gtttattgtc
     2581 ttttgccact aaacctttgc ccacatgatc gaaacttagc tcgatggtat tgccttttac
     2641 tttataactt ttgtacatcg ggcctgaata ttccactttt tcaccgtaca cgttggcacg
     2701 agcaatcaaa ccgagacgat aaccgatggc ttgcttgttt ttagggtgaa tattagtggg
     2761 ttggtcgccg gcattttcga tagctaccgc catgccggta ttttttacgg aaagattttg
     2821 aacctgtgct tcgcggacgg tcatcatcac accatcttca acgggtttgg ccatcggttt
     2881 gccataattg gccaattgca catacagaaa gggaaaatcg cctaccgaaa atttcgaacg
     2941 ccaatcggca atgagtgttt ccataatttc gcggtagagt tttgccgacg gaccgttgga
     3001 ttcgccctga taccacagcg cacctttgat agcatagggc acaagtggcg caatcatgcc
     3061 gttgtagcaa acaaaagggt tgtgttgatc caactccgga tcgggatttt tgggagcttt
     3121 gggcttttta gccgtcacat ctcctgctgc agcctgagca gctgctaaat cgccgctgaa
     3181 ttttactttt tcgtcgcggt atttagccat tgtggtggca ctgtcggcca caaatttgtc
     3241 ccatttggca gtataagcat ccaaaagcgg tttcagattg ggatgggctt cgagggcttc
     3301 tttgctaatc caggtttcgg cggtgctggc tccaaaagca gaagtaagca agcctacagg
     3361 gattttatat ttctgataaa tttctcgggc aaagaaatac gaaacggcag aaaagtgtcc
     3421 caccgtttga ggagagcaaa tttcccattt cccaacagga tttttctgcg gatattggtt
     3481 gggcgtgtaa tccacatcga aaacacgaat caacggaaag ttggcgttgg ccacttcttt
     3541 ggcttcgttg atgacgccac accaataacg gtcttcctta gccacagtca tatccatgtt
     3601 cgattgcccg ctacacaacc acacatcgcc cacatacaca tcgtcgaaag tctgtacatt
     3661 atcgcctgca atttccattt tgtaaggacc accgcctttt tgtttgggca gtttcagcat
     3721 ccagttgcca ttggcatcgg cttttaccga aactgcattt ccattcagag ttacggttac
     3781 cgattctttg ggccaggctg ttccccatac gggaatttca acattacgct gcaacaccat
     3841 atgttcgcaa aaaagtgcag caggtttcac gtcggcaaaa agggagttct ttacaaaaaa
     3901 acaaagaaac agaagaaatg tagttttttt cattttattc atattaaaga cgagcttttc
     3961 caaagtataa actttggaaa agcttttaaa aatctattca atatattgtt aaataaacag
     4021 atcgttctca acaaaaagtg tattactcca tatagaacac ttcaggtaat ggaattgaaa
     4081 cgggcgaatt atcggggttt gtttccataa tgtcggccat ataagcccac cacttttgta
     4141 caatttcagt tgatccaagg tcttgcgaac caccttcgcc attgtttttt tgaacggcaa
     4201 aaagaatgtt tgtttcttta tcccaaaaaa tagaatagtc atacactcct gcgtctttca
     4261 acagtttaga taattctggc caaatggcgt tgtggcgttt ttcgtactcg gcttcgaagc
     4321 ccggtttcag aaacatttta aaagctgatc ttgtcatatt atttagtatt aaagttgatt
     4381 agtttgcggg tggacggaat tccgattccg tctcatattt gtttgttatt aaaacggagt
     4441 cggaactccg ttctcccgaa ttattttgac cagaatatcg gttcatttgt tttttgatct
     4501 tccagataga attgaactgc gctatcattc attttagggt gcgtattttt caataaacga
     4561 atcatttc
//
LOCUS       DATDNM010000237         3621 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_137207, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000237 DATDNM010000000
VERSION     DATDNM010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137207"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VI413_04080"
     CDS             complement(<1..341)
                     /locus_tag="VI413_04080"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6913832.1"
                     /translation="MKTFRTWLICLALGFTTVIDAQSILVSGKILDSQTQQALVGVYV
                     TVKNSPTATVSDAAGNYSLKTEIGKTLVFSYIGYMRKEMEVTGPKLDILLFADTKSLS
                     ECVTVGYGSNQA"
     gene            480..1052
                     /locus_tag="VI413_04085"
     CDS             480..1052
                     /locus_tag="VI413_04085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6913833.1"
                     /translation="MKNKDKISDLTNENLLQAFIESGDVAYFGELYRRYIPLVYGLCL
                     KYLNNQESAHDAVMDIFATLVEKVPQYEIKNFNTWLYSVAKNHCLHVLRKEKQTSFVN
                     IEDAFVENEAIFTLTDRPQSQEETDALVYCLDTLSEEQRLSINYFFYEGKSYADIVDL
                     TGIALTKVKSYIQNGKRNLKSCIIKVLQLS"
     gene            1060..2268
                     /locus_tag="VI413_04090"
     CDS             1060..2268
                     /locus_tag="VI413_04090"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6913834.1"
                     /translation="MKLIDYIQGKRRGNEANKLEREAMNDPFLQDAIDGFDAVPGDHA
                     SAIEELEAQLERRINKPKPVISYRFWIMGAAASLVLLLGIGSLLHFDTKVSPELAHKE
                     TKTIIQTQKPVAVTKSFVQPITKTIARNIEKPIRKLVLKQEVTNAEPIAIVEPINIQR
                     PSDSTQQLQGIQVLTDQMAFKVNQTNTFGAVKQSTPKITLCNGLKGVVLDEENKPIVG
                     ASIRIGGTSFGTVSDMNGKFQINVPQRNTGKFEASFIGYEKFEMPISGDSNTVIRLKP
                     NNLALNEVAVVGYGAKKLIKLPKIELNEALQGRMAGLDVSGSSRRGAFGEKEFRKYFA
                     EKRSQTICVGEDGSIDVSFTIDESGKPTNIYFNKSTCEELKIELTRLLLNSPKWTTIG
                     RKVKMHIELK"
     gene            2320..>3621
                     /locus_tag="VI413_04095"
     CDS             2320..>3621
                     /locus_tag="VI413_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY6913835.1"
                     /translation="MRKELQLSLIPELAEKPELLTKQVADKLEISPSRITQLRTTKKS
                     IDARSFQPKVNLTVEVYWDEPAPVREKPVFEYQSVEGKTPVLIIGAGPAGLFAALKLI
                     ESGLRPIILERGKNAHDRKVDIAQLNRNKGIDADSNYCFGEGGAGTFSDGKLYTRSKK
                     KGNTERVFEIFHYHGAAEEILYDAHPHIGSDKLPIVIENISKTITSCGGEIHFEQKLT
                     EILIENNQVVGCKTADGSVFEAKSLILATGHSAHDIYEMLHNQGVALEPKGFAMGVRV
                     EHPQALIDSIQYHCKERGPYLPAASYNLVDQVNERGVYSFCMCPGGHIVPAGSGLNEI
                     VVNGMSASQRNSPFANSGIVVEIRPEDIPAEFQEYGVLAGLKFQQYVENLAYKNNGGL
                     GQVAPAQRLGDFVKGRLSADLPECSYLPGLISSPMHFWLPEN"
BASE COUNT         1119 a          646 c          824 g         1032 t
ORIGIN      
        1 gcctgattac ttccgtatcc aacagtcacg cattccgaca ggctttttgt atcggcaaag
       61 agtaaaatat ccagtttggg accggttact tccatttctt ttctcatata accgatgtaa
      121 gaaaaaacaa gcgtcttacc tatttcagtt ttgaggctgt agttgcccgc agcatcgctg
      181 actgttgccg taggggaatt tttgactgta acatatactc ctacgagtgc ttgttgggtt
      241 tgagagtcca gaattttgcc actaacaaga attgattggg catcgataac tgttgtaaat
      301 ccgagtgcta aacaaattag ccatgttctg aatgttttca tacgtttatt tatttaaatg
      361 attaatgttt actaaaaatt caatttacct attagataca ttttaggggc ggattccata
      421 aacgcatgtt attttttttt acttttgtag aataaaaaaa tatagaaaca cctatcttat
      481 tgaaaaacaa ggataaaata tcggacctta caaacgaaaa tttgcttcag gcttttatcg
      541 aaagcggtga tgtggcatat tttggtgaat tgtatcgacg atatattccg ttggtgtatg
      601 gtttgtgttt gaaatatctg aataatcagg agtcggctca cgatgcagtg atggatattt
      661 ttgccactct ggttgaaaaa gtgcctcaat acgagattaa aaattttaat acatggttgt
      721 acagtgttgc caaaaatcat tgtttgcatg tgttgagaaa ggaaaaacaa acgagtttcg
      781 ttaatataga agatgcattt gtggaaaacg aagctatttt tactctaaca gatagaccac
      841 aatcgcagga agaaacagat gcattggtat attgcctcga cactttgtcg gaggagcagc
      901 ggttgagcat taattatttc ttttacgagg gaaaatccta tgccgatatc gttgatttga
      961 caggtattgc gctgaccaaa gtgaaaagtt atattcaaaa tggcaaacga aatctgaaaa
     1021 gttgcataat taaagttcta cagttatcat aagtaaacta tgaaattaat agattacata
     1081 caaggtaaac gacgcggaaa cgaagccaat aagctcgaac gcgaagccat gaatgatccg
     1141 tttttacagg atgctattga tggttttgat gctgtgccgg gcgatcatgc ttcggcaata
     1201 gaggaacttg aagctcagtt ggagcgaagg ataaataaac caaagccggt tataagttat
     1261 cgtttttgga ttatgggtgc tgccgctagc cttgtattat tgctggggat tggaagtttg
     1321 cttcatttcg atacgaaagt atcacctgaa ttggcgcata aagaaacaaa aacaattatt
     1381 caaacccaaa aacctgttgc tgttacgaag agttttgtgc aaccaataac aaaaacaatt
     1441 gcccggaaca ttgagaaacc aatccgaaaa ttagttctaa aacaagaagt tacaaatgct
     1501 gagcctattg caattgttga accaatcaat atacaaagac cgtccgactc aactcaacaa
     1561 ttacagggaa ttcaggtgct gacagatcaa atggctttta aagtgaatca aacaaataca
     1621 tttggggcag ttaaacagtc aacccctaaa attacattgt gcaatgggct gaaaggggtg
     1681 gttcttgacg aagaaaacaa acctattgtt ggtgcttcga tacgaatagg aggaaccagt
     1741 tttggaacag taagtgacat gaatgggaaa tttcaaatca acgttcctca acgaaataca
     1801 gggaagtttg aggcatcatt tattggttat gaaaaatttg aaatgccgat ttcgggcgat
     1861 tcaaatactg tgattcgact gaaaccaaat aatctggcat tgaatgaagt tgccgttgtt
     1921 ggttatgggg ctaaaaaact cataaaactc cctaaaatag aattgaacga agctttgcag
     1981 ggacgaatgg cgggtttaga tgtttcgggc agttcaagaa ggggcgcgtt tggtgagaaa
     2041 gaattcagga agtattttgc agaaaaacgc tcacagacaa tttgcgttgg tgaagatggc
     2101 agtattgatg tcagttttac aattgatgaa tcaggaaaac caacgaatat ctatttcaat
     2161 aaatcaacct gtgaggaatt gaaaattgaa ttaacccgct tacttcttaa ctcgcccaaa
     2221 tggacaacaa ttggaaggaa ggtgaagatg catatagagt tgaaatgata ggtgattaat
     2281 tttgcgtatc tttgcaatcc aataatttga attgaattta tgcgcaaaga attacaatta
     2341 agccttattc ccgaactagc cgaaaagccc gaattgctaa ccaaacaggt ggcagataaa
     2401 ctggaaattt caccttcacg cattactcag ttgcgtacaa ccaagaaatc tatcgatgct
     2461 cgttcgtttc aaccgaaagt gaacctgact gtggaagtgt attgggacga gccggctcct
     2521 gtacgggaga aacctgtttt tgaatatcaa tctgtagagg gtaaaacccc ggtgttgatt
     2581 attggtgcag gacctgcggg gctttttgcg gctcttaaac tcatagaatc cgggctcagg
     2641 ccgattattc tggagcgtgg caaaaatgcc cacgaccgaa aagtggatat tgcccaactg
     2701 aaccgtaata aaggcattga tgccgattca aattactgct ttggtgaggg aggagcgggg
     2761 actttctccg acggaaaact ctatacccgc tcaaaaaaga aaggcaatac ggagcgtgtt
     2821 ttcgaaatat tccattatca tggagctgct gaagaaattt tgtacgatgc ccatccccat
     2881 attgggtctg ataaattacc cattgttata gagaatatca gcaaaaccat tacgtcttgt
     2941 ggcggtgaaa ttcattttga acaaaagctg actgaaatac tgattgaaaa taatcaggta
     3001 gttggctgca aaacggccga cggaagtgtt tttgaagcaa aatcgttgat tcttgctacc
     3061 ggacattcgg cccacgatat ttatgaaatg cttcacaacc agggcgtagc tctcgagccg
     3121 aaaggttttg ccatgggagt gcgggtggaa catccacaag cgctgattga cagcattcag
     3181 taccactgca aagagcgtgg accatacttg cctgctgcca gctacaatct ggtggatcag
     3241 gtgaatgagc gcggggtgta ttcgttttgc atgtgtcccg gcggtcatat tgtgccggca
     3301 ggtagcggat tgaacgaaat tgtggtaaat ggaatgtcgg catcgcaacg caattcgcct
     3361 tttgccaatt ctggtattgt ggtggaaatc cgccccgaag atattcctgc tgagtttcag
     3421 gaatatggtg tgttggccgg tttgaaattt cagcaatatg ttgaaaacct ggcttataaa
     3481 aataatggcg ggcttgggca ggttgctccg gctcagcgtt tgggtgattt tgtaaaagga
     3541 cgcctttcag ctgatttgcc tgaatgttcc tatttaccgg gcttgatatc ttcgcctatg
     3601 cacttttggt tgcctgaaaa t
//
LOCUS       DATDNM010000238         3632 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1205668, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000238 DATDNM010000000
VERSION     DATDNM010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3632
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1205668"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..666
                     /locus_tag="VI413_04100"
     CDS             <1..666
                     /locus_tag="VI413_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015531409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family protein"
                     /protein_id="HEY6913836.1"
                     /translation="YSINSYYAYRANGFFQNAAEVAAGPHLDGVTPKPGDIRYIDKDG
                     DNIINANDRFVLGNPFPRYSFGLNYNFNFKGLDFSMFWQGVGQRSVWLRGESVEAFHN
                     NNEGPVFDFHMDRWTPTNPDATYPRLTVGAESTNNAAKSNFWIQNGAYVRLKNIQLGY
                     TIPASLTKKVGVNRLRVYLSGENLLTLSKMVGGWDPETTSTSGGRIYPVATVTSIGLN
                     LTL"
     gene            680..2275
                     /locus_tag="VI413_04105"
     CDS             680..2275
                     /locus_tag="VI413_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009038776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913837.1"
                     /translation="MKNYKFKLNIVALSLLTILFSTSCVDLDVTPYDRISDVQYWNKP
                     EAAINALNTCYTNLMSAKEVLFSDATTDNAYCKGGEDQAIGNGSYSTSDGYVSSVWSS
                     KYAGIRNCNILLDNIDKVPGLTAELKNRYIAEAKVIRAYLYFELYSKFGDIPYFTKTI
                     TIAESQSLVRTPKAQVVENLLAELNNVIDNNYLPESYSGDDKGRINRYAAMGLKARIL
                     LFENRWAEVKATTEKIMGKFTLYPSYEGLFYAANEGNSEVILDIQYMLTTREHNVEYL
                     FIPPSMGGYSSLAPLQELVDSYIATDGQPISNSADYSATDPYKNRDPRLAATIIYTGN
                     SYLMADGSKKVINCDKGANKDGYGFSSDCTPTGYYLKKYWDKDHSTIVNLASGLNTIL
                     IRYADILLMNAEANAELGTLNQAVWDATIKPIRTRAGFTKASALDFPGAGADLITIVR
                     RERRSELAFEGLRYNDIVRWKTAETALNGWCHGLKTNDVVGTDNGFVRIENRAFDKAK
                     HYLWPIPQTERDLNKSLTQNPNW"
     gene            2294..3439
                     /locus_tag="VI413_04110"
     CDS             2294..3439
                     /locus_tag="VI413_04110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004321890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusE domain-containing protein"
                     /protein_id="HEY6913838.1"
                     /translation="MKKIIWIITLALVVAGCAKDYEFNTQFSAPTALNSPAAVVINVA
                     STNNIQLSWTGGGAAQGYTTYEVLFDKVGGDFSNPVYRSFSDLGVDTTFTLTHALLNT
                     IARKAGIPTATEGKIIWTVIASKGGEVKSSNLTKEISVTRGAGIDYNGNTLFLYGTAA
                     ENNGAGGLAMRNAAEGIFVIYTKAPVDGTIFFKSSTTDANAFVCYADATKKIKEGDGA
                     FNVSANAAGEEYRIIVDLNTQKMTIDKIGLVKAIWGATYDVIGNMAYQGNGIFKADGC
                     TIKFIQKDRPDTNPPSWLGWIEERYYFIANVNGTDVCWGRKDGVSAERPTGTETSAFY
                     ELVEFPWSQWDHLWKMKGSLDLTKCTITINTNDNGMVTHSFSNIQPL"
BASE COUNT         1151 a          733 c          768 g          980 t
ORIGIN      
        1 tattccataa attcgtatta tgcctaccgc gctaacggat tcttccaaaa tgctgccgaa
       61 gtggctgcag gtccgcatct ggacggtgta actccaaaac ccggtgacat tcggtatatc
      121 gataaagatg gtgacaatat aattaatgct aacgatcgtt tcgtgttggg aaatccattc
      181 ccacgctatt cgtttggatt gaattacaat ttcaacttca aaggtcttga cttttcgatg
      241 ttctggcaag gcgtgggcca acgcagcgta tggcttcgtg gcgagtcagt cgaagcattc
      301 cacaacaata acgaaggtcc ggtttttgat ttccatatgg atcgctggac acctacaaat
      361 ccggacgcta cttatccacg tttaactgtt ggagccgagt cgacaaacaa tgctgcaaaa
      421 tcaaacttct ggattcagaa tggtgcttat gttcgtctga aaaacattca gttaggttat
      481 accataccgg cttcattgac taagaaagtt ggagtaaatc gcctgagagt ttacttaagc
      541 ggcgaaaact tactgacact tagcaaaatg gtcggcggtt gggatccgga aaccacttca
      601 acttccggag gtagaattta ccctgttgcc actgttactt caatcggtct aaatttaact
      661 ctataaatca aataataaga tgaaaaacta taaattcaaa ctaaatatag ttgcactatc
      721 gcttctaact atattatttt caacatcatg tgttgatttg gatgttacgc cctatgatag
      781 aatcagcgac gttcaatact ggaacaaacc cgaagcggcc attaacgcgc taaacacctg
      841 ctatacaaac ctgatgagtg caaaagaagt gcttttttcg gatgcaacaa ccgacaatgc
      901 ttattgtaaa ggcggtgaag accaagccat tggtaatggt tcatattcga cttcggatgg
      961 atatgtatca tcagtttggt caagcaaata tgcaggtatc cgcaactgta atatcttact
     1021 ggataatatt gataaagtac cggggcttac tgccgagttg aaaaatagat acattgctga
     1081 agctaaggta atcagagcat atctttattt cgaattgtat tctaaatttg gcgatatccc
     1141 ctacttcacc aaaacaatta ccattgctga atctcaatca cttgtaagaa ctccgaaagc
     1201 tcaggttgtg gaaaatttgc ttgccgaatt gaataatgta attgataaca attacttacc
     1261 tgaatcttat tcgggcgatg ataaaggccg tattaaccgt tatgcagcca tgggactaaa
     1321 agccagaata ttattgttcg aaaaccgttg ggccgaagtt aaagccacga ctgagaaaat
     1381 catgggtaaa ttcacattgt atccaagtta cgaaggttta ttctatgccg caaacgaagg
     1441 taattcagaa gtaattcttg atatccagta tatgctcacc accagagaac ataatgtaga
     1501 atatctgttt attcctccat caatgggcgg atactcatca cttgctcctt tgcaagaatt
     1561 ggttgacagt tatatagcta ccgatggaca acccattagc aacagcgctg attattcggc
     1621 aacagatccg tacaaaaacc gcgatccacg cctcgcagca accatcattt acaccggcaa
     1681 cagctattta atggcagatg gttcgaaaaa agtgattaat tgcgataaag gcgctaacaa
     1741 agatggttac ggattcagct ccgactgtac tccaaccggt tactacctca aaaaatattg
     1801 ggacaaagac cacagtacca ttgtgaacct ggcttcggga ttaaacacca ttttgattcg
     1861 ttatgctgac attttattga tgaatgctga ggcaaatgcc gaattaggta cattgaatca
     1921 agctgtatgg gatgcaacta tcaaacccat tcgtaccaga gccggtttca ccaaagcttc
     1981 agcccttgat ttcccgggag caggagccga cctgattacg attgttcggc gtgaacgccg
     2041 gtcggaactt gctttcgaag gattgcgtta taatgatatc gttcgttgga aaactgccga
     2101 aacagcttta aacggttggt gccatggatt gaaaacaaac gatgtagttg gaactgacaa
     2161 tggatttgta cggatagaaa acagagcttt cgataaagcg aaacactact tgtggcctat
     2221 cccgcaaacc gaaagagatt taaataaaag ccttactcaa aaccctaatt ggtaatcgta
     2281 aaaacagaat gttatgaaaa aaataatatg gataatcacg ctggcactcg tagttgcggg
     2341 ttgcgccaaa gattacgaat ttaacaccca gttctcagcg cccacagcat taaattctcc
     2401 tgccgcagtg gtaattaatg ttgcctcaac aaacaatatt caattgtcgt ggaccggtgg
     2461 tggagcagct cagggatata caacgtatga agtgctgttt gataaagtgg gcggggattt
     2521 ttccaacccg gtttatcgtt cattcagcga tttgggcgtg gatacaactt tcactcttac
     2581 acacgctttg ctcaatacca ttgcccgtaa agccggcatt cctacagcaa ccgaaggtaa
     2641 aataatctgg acagtgattg catcgaaagg cggagaagta aaaagctcga atctgaccaa
     2701 agaaatctcc gtaacacgcg gagcaggtat cgattataac ggaaacacct tgtttttgta
     2761 tggtactgca gcagaaaata atggagcagg cggcttggca atgagaaacg ctgctgaagg
     2821 aatctttgtt atttacacaa aagctccggt tgatggtact atcttcttta aaagcagcac
     2881 aaccgatgct aatgcatttg tttgctatgc agatgcaacg aaaaaaataa aagaaggaga
     2941 tggtgcgttc aacgtgtcgg ccaatgcagc aggtgaagaa taccggataa tcgttgattt
     3001 aaacacccag aaaatgacaa ttgataaaat tggacttgta aaagccattt ggggtgcaac
     3061 atatgatgtg attggaaaca tggcgtacca gggaaatggt attttcaaag ctgatggctg
     3121 tactatcaaa tttatccaga aagacagacc ggatacaaac ccaccgtcat ggttagggtg
     3181 gattgaagaa cgctattatt tcattgccaa cgtaaacgga acagacgtat gctggggacg
     3241 taaagacggc gtaagtgccg aacggcctac aggaacagaa acctctgcat tttatgaact
     3301 ggttgaattc ccctggtcgc aatgggatca cctctggaag atgaaaggtt cacttgattt
     3361 gacaaagtgt accattacca tcaatacaaa cgacaatggt atggtaacac atagtttctc
     3421 aaacattcaa ccgttataat ttaaaaaaat cggggagtac agcatgaagt caattattct
     3481 gactgtactc cctgattttc aactaacttc acaatcaatt tggttgttat tcctacaaca
     3541 aataaaatga ttatcagcag aatgtcttat aatattggat tataaagaga attaagtcag
     3601 gtttcgcgat ttttaatcgc ggtcaaaaag ta
//
LOCUS       DATDNM010000239         2461 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_991431, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000239 DATDNM010000000
VERSION     DATDNM010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2461)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2461
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_991431"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..875
                     /locus_tag="VI413_04115"
     CDS             <1..875
                     /locus_tag="VI413_04115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913839.1"
                     /translation="VESGRKYYLTKGNVALKVSGTGSAMTVQAGENIKLGETVNVTRA
                     YNQSNGNTYFIDRPIQSPLTSVYKVLSETPEFSSFFSLLIGFPASSSSVIFVNKANYY
                     GIDFNVKFFNTFNYTVYVPTNAAIDQAIQDGIIKPWESQGSIVGINALTNATEKAAAI
                     SNLERFIRYHFQDNSVFVDNQSFERVYQSATQKKDDLATHFGTFKNKYYKIGVNCSPD
                     NVTLTTESNKTAHVVTTGGLYNIMTRDFVFSNKPSTFKNVDGTGSGTEFSSSLIYTSS
                     TAVIHQIDNVLSFQ"
     gene            890..>2461
                     /locus_tag="VI413_04120"
     CDS             890..>2461
                     /locus_tag="VI413_04120"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEY6913840.1"
                     /translation="MKRNFVIALLFNLLLIPVLTFGQKAGDNIVQGTVSAKSEGNLIG
                     VNVAEIDINNRVVNGTITDINGHYILKMKNPENRLSFSYTGYVKQVRKIDASRKIDIV
                     MVDNTQTISDVVITASKKHSEGGFSIPQREIASAMQSIDMKEMEGLQVSSVDEALQGR
                     IAGLDIVSNSGDPGSGTSMRIRGASSINGSSQPLIVLNGVPYEMQVDQSFDFANSNQE
                     QYANLLSINPDDIQEITVLKDAAASAVWGSKGASGVIMITTKKGYTGPTKIEYSYRYT
                     GTIQPQGMKMLNGNDYTMLMKQEFFNPAQDQNAGNFDEYNYNKSFTEYENYNNNTDWV
                     KEVTQLGNINDHYLTLSGGGERATYRISGGFMTQNGTIIGQKYNRLSSRAYLDYRVSD
                     RLKFTTELSYSYSSNDRNYVFDFTDGSTPGYGDSPNEDLSILSIAYKKMPNLSVYQQD
                     GSGNNTSKLYNILPSSRLNWDQVLLVNPVALALKAKNNVKNYRILPTFRLQYDFLDPN
                     VQTLRYNMYVSFDINN"
BASE COUNT          776 a          457 c          519 g          709 t
ORIGIN      
        1 gcgtagaatc tggtaggaaa tactacctga ccaaagggaa tgtggcactg aaagtgtctg
       61 gtaccgggtc tgcaatgacg gttcaggctg gcgaaaacat taaactcggc gaaactgtaa
      121 atgtaacaag agcctacaac caatcaaatg gaaatacata tttcatcgat cgtccgatac
      181 agtcgccttt aacttcggta tataaagtgt tgagcgaaac acccgaattt agctcattct
      241 tctctctttt aatcggattt ccggcgtcga gcagttcggt gatttttgtg aacaaagcaa
      301 attattatgg tatcgatttt aatgtcaagt ttttcaatac atttaattat acagtatatg
      361 ttcctacaaa tgcagctatt gatcaggcca tacaggatgg aattatcaaa ccatgggaat
      421 ctcagggctc gatcgttggt atcaatgctt taacgaatgc tactgaaaag gctgctgcca
      481 tatccaatct ggaacggttt attcgttacc actttcagga caattcggtg tttgtcgata
      541 atcagtcgtt tgaaagagta taccagtcgg caactcagaa gaaagatgac ctggcgactc
      601 attttggaac attcaaaaat aaatattaca aaatcggagt aaactgttct cctgataatg
      661 taacactcac aaccgaatcg aacaaaactg ctcacgtggt aacaacaggc ggactttata
      721 atatcatgac gagggatttt gtttttagca ataaaccgtc aactttcaaa aatgtggatg
      781 gaaccggttc tggaaccgaa ttctcctcat cattgattta cacttcgtca actgctgtta
      841 ttcatcaaat cgataacgtg ttgagttttc aataaataac taaaggaata tgaaacgaaa
      901 ttttgtaata gcacttcttt tcaatttact attgatacct gttttgacat tcggtcaaaa
      961 agccggcgat aatattgttc agggtacggt atccgcaaaa tccgaaggga atctgattgg
     1021 ggttaatgtt gccgaaattg atataaataa cagggttgta aatggtacaa ttactgatat
     1081 aaacgggcat tatatcctga agatgaagaa tcctgaaaat cgtctgtcat tcagttatac
     1141 cggctatgta aagcaagtcc ggaaaattga tgcatcccgt aaaattgata ttgtaatggt
     1201 agataatacc cagaccattt cggatgtagt catcacggca tctaaaaaac atagcgaagg
     1261 tggattcagt attcctcagc gggaaattgc ttctgcgatg cagtccatcg atatgaaaga
     1321 aatggaaggt ttgcaggttt cttcagtcga cgaagctctt cagggacgta ttgccggact
     1381 ggatatcgta tcaaattcgg gtgacccggg cagtggaact tccatgcgta ttcgtggtgc
     1441 aagttctatt aacggaagca gccagccatt aattgtgttg aatggtgtgc cttacgaaat
     1501 gcaggtggat cagagcttcg actttgccaa ttccaatcag gaacaatatg ccaatctgtt
     1561 gagtataaac cccgatgata ttcaggaaat cactgtgttg aaagatgctg cggcgtcagc
     1621 cgtatggggt tcgaaaggcg ccagtggggt aattatgatt acaacaaaga aaggatatac
     1681 cgggccaacc aagattgaat attcttatcg ttacaccgga acaattcaac ctcagggaat
     1741 gaagatgttg aacggaaatg actatacgat gttgatgaaa caggaatttt ttaatcccgc
     1801 tcaagatcag aatgccggta attttgacga atataactac aacaaatcgt ttactgaata
     1861 cgaaaactac aataacaata cggattgggt aaaagaagtt actcaactgg gaaatataaa
     1921 tgaccattat ctgacacttt cgggtggtgg cgaacgtgca acgtatcgca tctctggtgg
     1981 tttcatgact cagaacggga ctattatcgg gcaaaaatac aaccgcttgt cgtcacgtgc
     2041 ttatctcgat tatcgtgttt ctgaccgatt gaagtttacc acagagcttt cttattccta
     2101 ttcgagcaat gacaggaatt atgtctttga tttcactgat ggctcaactc ccggctacgg
     2161 cgatagtccg aatgaagatt tgtctatttt aagcattgcg tataaaaaaa tgcctaattt
     2221 atcagtttat caacaagatg gaagtggaaa taataccagc aaactatata atatccttcc
     2281 cagttcacga ttaaattggg atcaggtatt gcttgtaaat ccggtggcat tggctttaaa
     2341 ggcaaaaaac aatgtgaaaa attatcgtat tctgcctacg ttccgtttgc aatacgattt
     2401 tctggatccg aatgtacaaa cgctaaggta taatatgtat gtatcgtttg atatcaataa
     2461 t
//
LOCUS       DATDNM010000240         4266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1419223, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000240 DATDNM010000000
VERSION     DATDNM010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4266
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1419223"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(223..960)
                     /locus_tag="VI413_04125"
     CDS             complement(223..960)
                     /locus_tag="VI413_04125"
                     /inference="COORDINATES: protein motif:HMM:NF040365.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6261 family protein"
                     /protein_id="HEY6913841.1"
                     /translation="MKIALSRISIRSLSSLCDMIITGSETSGLELVGNHALLTILKAE
                     YERYDAVYGKKGYSGMGKKVAAANLLRTETYAALRLILRGYSKAEGFSGQADARQLLA
                     SFTLRGSNVYQDSYFSKSAFFGVLLQRLELPENKAILERLHLTEMVGLLKASIDNFET
                     LCSEQISANARLHMQNSASVQRKDLEKALRNYLDYITAMQSVDKYWKRLYLLMDEFVK
                     TIRHSHRAKKEVTTEEEATSEGAAEIQ"
     gene            complement(1274..2317)
                     /locus_tag="VI413_04130"
     CDS             complement(1274..2317)
                     /locus_tag="VI413_04130"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEY6913842.1"
                     /translation="MHQQKTVIHRILKSFLFVPVVFVFLLTANAQSAVNNSTNSIDSI
                     QQQDKDYVYDVVDKVAVYPGGEKALLNYVGRNTKYPFQEQQNGVQGTVMVRFVVTKLG
                     KVEKAAILRSVSPNIDEEALRVVNLLQDWIPAEKKGEKVSMNYVLPIQFKLNGGLTSK
                     SIDRTKKVAVILDEKLLPNDFDLNTLNKDSIKSVLIAKPDQKEKLEELASKYGANTTN
                     GVIIVLTKAYARLHPSPKVEPIDDDKVYVVIDQMPQFRGGEPALLSFISHNLKYPVEA
                     QRKGIQGTVIVRFVVSKTGHVDKVEVLRSLYSALDAESVRVVQSLPDWIPGEQRGEKV
                     NVYYTLPIRFKLQ"
     gene            complement(2458..3681)
                     /locus_tag="VI413_04135"
     CDS             complement(2458..3681)
                     /locus_tag="VI413_04135"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY6913843.1"
                     /translation="MCLSKTLKFVFVFSFAFAFSINAHARPLKNIQLASDSVISQKDD
                     SVYSVVDKMPEFPGGDKELIGFINKKLRYPADAKKKNEQGKVIVQFVISKTGKVENAT
                     VLKGMSASLDKEALRVIGKLPAWTPGEQAGNKVAVYKVVPVIFQDEESAWTVTEKTLV
                     IIDNEKMPLGFDTQILSSGKLASAIVLKPFPKEEKAKLIDKYGRQAVNGVVLITTKKD
                     EMEYILADTLIHTDCKEPDVLPEFPGGKAKMMTYIADSIHYPFVAQRLKTQGKVFVQF
                     LVDNKGKISDARVIRRADYYLDKEALRVVNTMPDWTPASKCGEKLNVYVTLPISFRLE
                     VPAAEKEWEKNDKTIVMLNGVKLPASFDLKLLNFTNLASYKVLQPTTKEVTKKLVSQY
                     GKDAVNGVVLITTNK"
     gene            complement(3859..>4266)
                     /locus_tag="VI413_04140"
     CDS             complement(3859..>4266)
                     /locus_tag="VI413_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY6913844.1"
                     /translation="SKEGPKRLSEQAVLLEQEALRVVNAMPKWTPGEQKGKKVAVYYT
                     LPIKFKLEGGTSVTTTFNGVAAKSSTKISSAIKYDGEAPLYIVDGKEVTESDFNAIKP
                     ENIQSINVLKGESATKAYGDKGKNRVVEVKLKK"
BASE COUNT         1264 a          919 c          682 g         1401 t
ORIGIN      
        1 agattccaat aatccggctt ttccaaaaac ggtatttgac aacaccaaca aactgaataa
       61 taaaataaac ttttgagaat tcaaatcagg taaactcata atcgacaaag gaaatttgtg
      121 ttgataatta aaaatcaatt gctgtcgcaa atatagtgaa attttcacaa ttaattcttt
      181 aaaaaagtca tttaaagaaa gagtccgcgt atttatctta actcattgta tctctgctgc
      241 accctcagaa gttgcctcct cttccgtagt tacttctttc tttgctcgat gcgaatgcct
      301 gatcgttttc acaaattcgt ccatcaacag atacagccgc ttccagtatt tatctaccga
      361 ctgcatagcc gtaatataat ccagataatt ccggagtgcc ttctctaaat ccttgcgctg
      421 cactgaagct gaattttgca tgtgaagcct ggcattggca gaaatttgtt cggaacacag
      481 tgtttcaaaa ttgtctatgg acgctttcaa tagtccaacc atttcggtga gatgtagccg
      541 ttccagtatg gctttatttt cgggcaactc caaccgctgc aacaatacgc cgaaaaaggc
      601 tgacttcgaa aaatagctat cctgatacac attactacca cgcaatgtaa acgatgccag
      661 caattgccgc gcgtcggctt gcccgctaaa tccttctgct ttggaatatc cacgcaggat
      721 taaccgcagg gctgcatacg tctccgtccg caggagattt gccgccgcca cttttttacc
      781 cattccgctg tatccctttt taccatacac agcatcgtag cgttcatatt cggctttaag
      841 tatagtgagc aaagcatggt taccaacaag ttcaagcccg gaagtttcgg aaccagtaat
      901 aatcatatcg caaagactag acagacttct tatactaatg cgagacaaag ctattttcat
      961 ggtaatatat ttatcaataa ttaattttta tataatgtct aataatattg caaacataat
     1021 attttatttt taataaatgt aatatatcag taattaaata tattatcatt tatatataat
     1081 tttataatac atatattaaa taatataaat ttataattac gtatatatgc caaataattt
     1141 aaatataatt atttggcata ttactacaat atacatttat tggataatat atatttttat
     1201 ataattgtac aatgagaaca aaaaaaacgt gagttggaga tactcacgtt tttcttatct
     1261 tgaattcacc tatttactgt aacttaaatc taatgggtaa agtgtaatat acattgactt
     1321 tttcgcctct ttgctcaccc ggaatccagt ctggtaaaga ttgtacaacc ctcacacttt
     1381 ctgcatcaag tgcagaataa agacttctaa gcacttctac tttatccaca tgtccggttt
     1441 tactaactac aaaccgaaca atcacagtcc cctgaattcc ttttcgttgc gcctcgaccg
     1501 gatacttcaa attatgtgag ataaaactca gcaatgctgg ttctcctccg cgaaattgtg
     1561 gcatctgatc aataacaaca tacaccttgt catcatctat cggttctact ttgggcgaag
     1621 gatgtagacg ggcataagcc ttagttagta caataataac tccattagtt gtatttgcac
     1681 cgtatttcga agccaattct tccagttttt ctttttggtc tggtttggca ataagaactg
     1741 atttaatgct atccttattc aacgtgttaa gatcaaaatc atttggcaac aacttttcat
     1801 ccaaaattac agcaactttt tttgttcgat ctatagactt ggatgttaaa ccaccattca
     1861 gcttaaactg aattggcaaa acgtaattca tacttacttt ttcacctttc ttctcggcag
     1921 gaatccaatc ttgcaataga tttacgaccc gcaatgcttc ttcatcgatg tttggactta
     1981 cacttcttag tattgcagct ttttcaactt tacccaactt tgttacaaca aatcgaacca
     2041 taaccgtgcc ctgaacacca ttttgttgct cttggaacgg gtattttgta tttctaccga
     2101 cataatttaa taacgctttt tcaccaccgg gatatactgc tactttatct acgacatcat
     2161 aaacataatc tttatcctgt tgttgaatcg aatcaattga attcgtcgaa ttattgactg
     2221 ccgattgggc atttgccgta agcagaaaca caaatacgac aggaacgaaa aggaacgatt
     2281 ttaaaatccg gtgaatcaca gttttttgtt gatgcatgct gatgtaatgt ttgagttgat
     2341 tatttacgtt aagagccggc aaatgtatta ataatttcac cagttaacaa aataaatacg
     2401 ggataaatga aaaataattt tcatttatcc cgtacaaata cttagaggct attcggctta
     2461 cttatttgtg gtgatcagca ccaccccgtt caccgcatct tttccatatt gcgaaaccag
     2521 tttttttgta acttctttgg tcgtaggttg aagcacttta taagatgcca gattggtaaa
     2581 gttcaacaat ttcaaatcga agcttgcagg caactttact ccgttgagca tcacaattgt
     2641 tttgtcgttc ttttcccatt ctttctctgc ggccggaact tcaagtctaa agcttatcgg
     2701 caaggtgaca tatacattca atttttcgcc gcactttgaa gccggcgtcc agtcgggcat
     2761 tgtattcaca acacgcaaag cctctttgtc cagataataa tcggcacgtc taatcactct
     2821 cgcatcactg attttacctt tgttgtctac caaaaactga acaaatactt ttccctgcgt
     2881 ttttaatcgt tgagccacaa acgggtaatg aatgctatct gcaatataag tcatcatctt
     2941 cgcttttcca ccaggaaact ccggcaatac gtccggttcc ttacaatctg tatgaatcaa
     3001 agtgtcggcc aaaatatatt ccatttcatc ctttttggta gtgatcaaaa ccactccgtt
     3061 gacagcctgg cgtccgtatt tatctatcag cttcgctttt tcttctttcg ggaaaggctt
     3121 caatacgatt gccgaagcca acttgccaga actcaatatc tgtgtatcga aacccagagg
     3181 cattttttca ttgtcaatga taacaagtgt tttctcggtc accgtccagg cgctctcttc
     3241 gtcctgaaaa ataacaggta ccactttata cactgccacc ttattgccgg cttgttcgcc
     3301 cggagtccag gccggcaact tgccaataac ccgcaacgct tctttatcca ggctggccga
     3361 catgcctttc agcactgttg cattttccac ctttccggtt ttacttataa cgaattgaac
     3421 aatcactttc ccctgttcat ttttcttttt tgcatcagcc ggataacgga gttttttatt
     3481 gataaaccca atcagttcct tgtcgccacc cggaaactca ggcattttat caactaccga
     3541 gtaaaccgaa tcatcttttt gtgaaattac ggaatcagac gcaagctgaa tatttttcaa
     3601 tggccgggca tgtgcattta ttgaaaatgc gaaagcaaac gaaaaaacga atacgaattt
     3661 gagagttttt gataaacaca tattgaaaat aatttattga tattgactga atataaaaaa
     3721 ccaaaaagtg gtttgataac gaaaattgga aaccggacgc aaatgtacaa ttatttttcg
     3781 tgccttaaca aaactaacaa agcagaaatg aaaaaaattt catttctgct ttgtataatt
     3841 atgaatttgt actggctttt actttttcag tttaacttcc accaccctat tcttaccttt
     3901 atctccatag gcttttgttg cagattctcc tttcaacaca tttatcgact ggatattttc
     3961 aggtttaata gcattaaaat ccgattcggt tacttccttc ccatcaacta tatacaaagg
     4021 agcttctcca tcatatttta tggctgaaga aattttagta ctgcttttag cggcaacacc
     4081 attaaaggta gtggttacag atgtaccacc ctctagttta aacttaattg gcaaagtata
     4141 ataaacagct acctttttcc ctttttgttc gcccggagtc catttcggca tagcatttac
     4201 tacccgaaga gcttcttgtt ccaaaagaac tgcttgttct gagagacgtt taggtccttc
     4261 ttttga
//
LOCUS       DATDNM010000241         3680 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_137928, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000241 DATDNM010000000
VERSION     DATDNM010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3680
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137928"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..1001
                     /gene="panC"
                     /locus_tag="VI413_04145"
     CDS             156..1001
                     /gene="panC"
                     /locus_tag="VI413_04145"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEY6913845.1"
                     /translation="MKIIRLKAELQTEIESLKSAGKTIGFVPTMGALHDGHKALVKQC
                     VSENDICVVSIFVNPTQFNNQTDLEKYPRNLDGDAQMLEQVGCKLIFAPEPTEIYDNN
                     ELNNQFSFDFCGLDTVMEGKFRPGHFNGVVQIVSKLFQLVKPDKAYFGEKDFQQLAII
                     HHMVKSMNFSVKIIDCPIVREPSGLAMSSRNERLTSEQRKKAVEISKVLFESRNFVSQ
                     LSPIELTNWVIERVNSVEGLTVEYYEIVNSATLQTLSSWSAPAVGCVAVFCGEVRLID
                     NIRYN"
     gene            1028..1378
                     /gene="panD"
                     /locus_tag="VI413_04150"
     CDS             1028..1378
                     /gene="panD"
                     /locus_tag="VI413_04150"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005861624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEY6913846.1"
                     /translation="MLVHVVKSKIHRATVTEANLNYIGSITIDEDLMDAANIIANEKV
                     SIVNNNNGERFETYVITGERGSGMICLNGAAARLVQPGDIVIIMAFAIMEMEEARTFK
                     PAVIFPDTATNKII"
     gene            1415..2002
                     /gene="hisH"
                     /locus_tag="VI413_04155"
     CDS             1415..2002
                     /gene="hisH"
                     /locus_tag="VI413_04155"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEY6913847.1"
                     /translation="MKVVIIKYNAGNIRSVLFALERIGINATVTDDYDEIRSADRVIF
                     PGVGEASSAMQYLKEKELDQLICSLKQPVLGICLGMQLMCAHSEENNTQCLGIFDQKV
                     KKFPEAGLKVPQIGWNNITDLKSPLFNGINENAYMYFVHSYYVENCSDAIAKTDYVQQ
                     YSSAVQKNNFYAVQFHPEKSGETGQKILENFIHGL"
     gene            2069..3199
                     /gene="tgt"
                     /locus_tag="VI413_04160"
     CDS             2069..3199
                     /gene="tgt"
                     /locus_tag="VI413_04160"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002560222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEY6913848.1"
                     /translation="MTFEIQHTDPNSNARAGKITTDHGVIETPIFMPVGTVASVKAVH
                     QHELKEDIKAQIILGNTYHLYLRPGIHALEQAGGLHKFNGWDRPILTDSGGFQVFSLS
                     ENRKLKEEGATFRSHIDGSKHLFTPESVVDIQRSIGADIIMAFDECTPGTADYQYAKK
                     SMEMTHRWLERGLKHFDKTEPKYGYSQTFFPIVQGCVYPDLRRQSAEFIASQNREGNA
                     IGGLAVGEPTEKMYEMVEVVNEILPKDKPRYLMGVGTPQNILEGIERGIDMFDCVMPT
                     RNGRNGMLFTSQGIMNMKNERWKNDFSPLDEFGTSYVDHSYSKAYLRHLFISKELLAM
                     QIASIHNLAFYLWLVGEARKHIQAGDFSTWKKGMIEQLGRRL"
     gene            3215..>3680
                     /locus_tag="VI413_04165"
     CDS             3215..>3680
                     /locus_tag="VI413_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEY6913849.1"
                     /translation="MKFKIDYHKFGLKRIDTYIIKKFLGTYFFSIILILSISVVFDLT
                     EKLDKFYDHDAPLKAIIVDYYFNFIPYYMNMFSPLFTFIAVIFFTSKMATNTEIIAIL
                     ASGVSFRRLMLPYFLSAAIIASISFTVGGYIIPPGNKKRLDFEDKYVSKFKTD"
BASE COUNT         1238 a          713 c          718 g         1011 t
ORIGIN      
        1 aacaatattc cacaaaacaa caaaacaacc ttaaaccttg tttcagatat atatggcaaa
       61 aatgtaagat tatacaaata agttttacta cttttgcacg caatttttac gggtcttaaa
      121 tctgtgataa cagttgactc aaaaagaata aagcaatgaa aataattcga ctaaaagcgg
      181 aacttcagac tgaaatcgag tcacttaaat cagccggaaa aacaatcgga tttgtcccca
      241 ccatgggagc acttcacgat ggacacaaag cacttgttaa acaatgtgtt tcagagaatg
      301 atatatgtgt tgtcagcatt tttgtaaacc caactcaatt caacaatcag acggacttag
      361 aaaagtatcc gcgaaatctg gacggcgatg cacaaatgct tgaacaagtg ggttgcaagt
      421 taattttcgc tcctgaaccg actgaaattt atgataataa cgagttgaac aaccagtttt
      481 cattcgattt ttgtggactg gacactgtaa tggaaggtaa atttcgtccg gggcacttca
      541 acggcgttgt acaaattgta agcaaacttt tccaattggt gaaaccagac aaagcctatt
      601 ttggagaaaa ggatttccaa cagctggcaa ttatccatca catggttaag tctatgaatt
      661 tcagcgtaaa aataatcgac tgccctattg ttcgcgaacc aagtgggcta gctatgagca
      721 gtcggaatga gcgcttgacc agtgaacaac gcaaaaaagc agttgaaatt tccaaagtat
      781 tgttcgaaag tcgtaacttt gtatcgcaat tatcaccaat cgagctgact aactgggtta
      841 ttgaaagggt aaatagtgta gaaggactga cggtagagta ttatgaaata gtcaattctg
      901 caacattaca aacattaagt tcatggtcgg cacccgcagt tgggtgcgtt gctgtttttt
      961 gcggagaagt cagactaatt gacaatatca gatataattg ataatcttaa ttgaaataaa
     1021 gaaacaaatg ttagtacacg ttgtaaaatc gaaaattcac agagcaaccg tcacggaagc
     1081 caacctgaat tatattggaa gcatcaccat tgatgaagat ctaatggatg ccgccaacat
     1141 tattgccaac gaaaaagtaa gcattgttaa caataataat ggagaaagat ttgaaactta
     1201 tgtcattaca ggagaacgcg gatcgggaat gatttgctta aacggtgcag cagcccgcct
     1261 ggttcagccc ggagacatag ttattattat ggcatttgcc ataatggaaa tggaagaggc
     1321 cagaacattt aagcctgctg ttatttttcc tgacactgcc acaaataaga tcatttaatc
     1381 aacaactttt tgatcattca acacacaaaa acaaatgaaa gtcgtaatta tcaaatacaa
     1441 tgcaggtaat atccgctctg tgctttttgc acttgaacga atcggcataa acgcaactgt
     1501 aactgatgat tacgacgaaa ttcgctccgc cgatcgcgta attttcccgg gcgtgggcga
     1561 agcttcttca gctatgcagt acctgaaaga aaaagaactt gatcagctaa tatgctctct
     1621 caaacaaccc gttttgggaa tttgtcttgg tatgcaatta atgtgtgctc attctgaaga
     1681 aaacaacact caatgcctag gtattttcga ccaaaaagtg aaaaagtttc ctgaagcagg
     1741 actcaaagtt ccacaaattg gctggaataa tattaccgat ttaaagtcac cgcttttcaa
     1801 tggaattaat gaaaatgcat acatgtattt tgttcacagc tattatgtag agaattgctc
     1861 agacgcaatt gcaaaaacag attatgtaca acaatacagt tctgccgtac aaaaaaacaa
     1921 tttttacgcg gtgcaattcc atcccgaaaa atcaggcgaa actggacaga aaatcctgga
     1981 aaatttcata catggtttat aagaatctat agaccagtaa attcagcatt aacttctttc
     2041 tcattatatt tttgattcac agaccaaaat gacttttgaa atacaacata ccgacccaaa
     2101 cagcaatgcc cgagcgggta aaatcactac agatcatggc gttatcgaaa cgcctatttt
     2161 tatgccagta ggtacggttg cgtcagtcaa agctgttcat caacacgaac taaaagaaga
     2221 tattaaagca caaattattc tcggaaacac gtaccatttg tacctacgcc caggaattca
     2281 tgcactagaa caggcaggcg ggcttcacaa gtttaatggt tgggacaggc caattctgac
     2341 cgacagcggt ggttttcagg ttttttcatt atcagaaaac cgcaaactaa aagaagaagg
     2401 agccacattc aggtcacaca ttgatggaag caaacatttg tttactccgg agagtgttgt
     2461 agacattcaa cgatcaatag gcgctgatat cattatggct tttgatgaat gtacaccagg
     2521 aacggcagat tatcagtacg ccaagaagtc aatggagatg acacaccgct ggctggaacg
     2581 cggattgaaa catttcgata aaacagaacc aaaatacggc tattcacaaa cttttttccc
     2641 aattgtccag ggctgtgtat accctgacct gcgtcggcaa tcggcagaat ttattgcttc
     2701 gcaaaatcgt gaaggcaatg caatcggcgg tttggcagtt ggtgaaccta cagaaaaaat
     2761 gtatgaaatg gtagaagtcg tgaacgagat actaccaaag gataaaccgc gttatttaat
     2821 gggagttggc actccgcaaa atattctgga aggaatagaa cgcggcattg acatgtttga
     2881 ctgcgtaatg ccgacacgaa acggacgaaa cggaatgctc ttcacttcgc agggaattat
     2941 gaatatgaaa aacgaacggt ggaaaaacga tttttctcca ttggacgaat ttggcacttc
     3001 gtatgtagac cactcatact caaaagcata cttacgccat cttttcatta gcaaagaatt
     3061 gcttgccatg caaattgcat ctattcataa tctggcattt tatctgtggc ttgtaggtga
     3121 agcccgaaaa cacatccagg ctggcgactt tagcacatgg aaaaaaggaa tgattgaaca
     3181 actcggacgc agattataat taattaatcg gaaaatgaaa tttaaaatcg actaccacaa
     3241 attcggatta aaacgaattg acacatatat tataaagaag tttttgggga cttatttttt
     3301 ctccattata cttattttaa gtatttccgt ggtttttgat ttaactgaga aactagataa
     3361 attctacgat cacgatgcgc cattaaaagc tatcattgta gattattact tcaatttcat
     3421 tccatactac atgaatatgt tcagcccgct gttcacattc attgcagtta ttttcttcac
     3481 atccaaaatg gctaccaaca ccgaaattat tgccattttg gctagtggcg tcagttttcg
     3541 acggttaatg cttccttatt ttctttcagc agcaatcatc gcctccattt cttttaccgt
     3601 tggtgggtac atcatacctc cggggaataa aaaaaggctg gattttgagg acaagtacgt
     3661 atctaaattc aaaacagaca
//
LOCUS       DATDNM010000242         2702 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1206122, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000242 DATDNM010000000
VERSION     DATDNM010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2702
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1206122"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..725)
                     /locus_tag="VI413_04170"
     CDS             complement(174..725)
                     /locus_tag="VI413_04170"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY6913850.1"
                     /translation="MTLTENLISEHKDIIELLGIMNKIADNIESKNVFYTSDIEDIIE
                     FLDFFIDKSHHSKEEIFYQELSLQEKARENVPVSVMLYEHVLTRKYINDIKSCIENCK
                     VGNNFSVELLAESLINYIRLINNHISKEENIIFPLANKLLSDEKQNELYQKFKEVETE
                     IEVHGFKEHYKKLLKKLKSNYPD"
     gene            1095..1505
                     /locus_tag="VI413_04175"
     CDS             1095..1505
                     /locus_tag="VI413_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006799545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HEY6913851.1"
                     /translation="MTSQTEFTLRQYNRGFHLITDEIVAHLPKLPESGLLHLFLKHTS
                     AALTINENADPDVQTDMAHIFDNLIRENEPYYVHTLEGDDDMPAHAKSSIVGAGLTIP
                     ITKGKLNMGIWQGVYLCEFRLHGKSRKIVATIIS"
     gene            1554..>2702
                     /locus_tag="VI413_04180"
     CDS             1554..>2702
                     /locus_tag="VI413_04180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6913852.1"
                     /translation="MKKIIFELSLLFIALTASAQDITGEWNGALKIQSMQLRIVFHVT
                     KTETGYTATMDSPDQGAKGIPMSKATYENQTLTLELAAARINYSGTFDNEEKVTGTFN
                     QAGQSFPLVLTRKAVDKIEVKRPQNPVEPYSYYSEEVTFENKKDSITLAGTLTLPKKA
                     GRFPVVVLISGSGPQNRDEELMGHKPFLVLSDYLTHNGIGVLRFDDRGTNASKGNFAK
                     ATTNDFAGDVEAAVNYLKTRKDIDNKRIGLIGHSEGGIIAPIVAVNCKDVKYIVLMAG
                     TAIPGSELLLRQQELIGRASGMTEEALKTTAELNTHIYKLVNEISDKDTLKARMTDYL
                     LARSKELPDMKIQEGKKLNDMIELQLNQTISPWMLNFIRYNPAPMLEKV"
BASE COUNT          911 a          484 c          466 g          841 t
ORIGIN      
        1 ttcatttcga aaaacctgac aagtgctatt tgtgaaagct taaatctgtg aataaacccg
       61 atacaatgtt gataataaaa aatacaggct tcgttttaaa tgaagcctgt atttttcagt
      121 atcgatagca agtaaattga acacgaataa gcagagtatg ttttgcttaa tgttcaatcg
      181 ggataattgg atttcaattt tttcaacaat tttttgtaat gctccttaaa tccatgtact
      241 tcaatttccg tctctacctc tttaaatttc tgatatagct cattctgctt ttcgtcactt
      301 agcagtttat tggccagagg aaaaataata ttctcttctt tgctaatatg attatttatt
      361 aatctgatat aatttataag gctttcggct aacaattcta ccgaaaagtt attcccgact
      421 ttacagtttt cgatacaact cttaatatca tttatatatt ttcgggtaag tacatgttca
      481 taaagcatta cactaaccgg aacattttcc cttgctttct cctgtaaaga gagttcctga
      541 taaaaaattt cttctttaga atgatggctt ttatcaataa aaaaatccaa aaactcaata
      601 atatcctcaa tatcacttgt ataaaaaaca tttttcgatt caatattatc cgcaatttta
      661 ttcataatac ctaataattc tataatgtct ttatgttcgc tgattaaatt ttctgttaat
      721 gtcattagtt tataaaatta attagtgaaa aatagtttta ttttgtgata cgcacattgc
      781 aattgaattc aaaaaatctt taattttccg tgtttagtta ttatttataa attgacctct
      841 gatttaacca gataaaacct gattaaaaac agaacactta ttcgaaggct caaaatcatt
      901 attattgaaa taattactac attgtcataa tatcacatat cgtataaaaa aacagattat
      961 ctatagtaat gttttatctt tttagaattt tatggctata gacataaata ttaaactggt
     1021 gaatttgatt ttaaataata tcgtaattat tgtccgaaag agttatattt gcagttaata
     1081 taatttatac aatcatgact tctcaaaccg agtttacact tcgtcaatat aaccgtggat
     1141 tccatctgat aactgatgaa atagttgccc atttacccaa attaccagaa tcgggccttt
     1201 tgcatttatt tttgaaacac acttcggcgg cacttacgat aaacgaaaat gccgaccctg
     1261 atgtacaaac cgatatggct catattttcg acaatttgat tcgcgagaat gaaccgtatt
     1321 atgtacatac gcttgaaggt gatgacgaca tgcctgcaca tgccaaatca tcaattgttg
     1381 gtgcagggct aactattccg atcacaaaag gaaaactgaa catgggcatc tggcagggag
     1441 tctatctttg cgaatttcga ctacatggca aaagtcgtaa gattgtggca accataatta
     1501 gttaagccct gtagctcaat ttatgatgta ctaatacata aaatccgata gatatgaaga
     1561 aaatcatttt tgagttgtct ctactattta ttgcgctgac agcatcggcc caggatatta
     1621 ccggcgaatg gaatggagca cttaaaattc agagtatgca attacgcata gtgtttcatg
     1681 taactaaaac tgaaacaggc tacacagcta ccatggatag tcccgatcag ggtgcaaaag
     1741 gcattcctat gagtaaagcc acctatgaaa atcaaacgct gactcttgaa ctggctgctg
     1801 caagaatcaa ttacagcggg acttttgata acgaagaaaa ggtaacagga acttttaatc
     1861 aggccggaca atcttttcct ttggtattaa cccgcaaagc agttgacaag atagaagtaa
     1921 aacgtcctca aaatcctgta gagccttatt cttattattc ggaagaagtt acttttgaga
     1981 ataaaaaaga cagcataact cttgctggaa cacttacatt acctaaaaag gcgggcaggt
     2041 ttccggtagt tgttttaatt agcggaagcg gaccccaaaa cagagatgaa gagcttatgg
     2101 gacacaaacc ctttttggta ttatcagatt acctcaccca caacgggata ggcgtattac
     2161 gcttcgacga ccgcggaact aatgcttcga aaggaaactt tgctaaagcc accaccaatg
     2221 attttgccgg cgatgtggaa gctgcagtca actatctgaa aacacgcaag gatattgaca
     2281 acaagagaat tggtctgatt ggtcacagcg aaggtggaat cattgctccc attgtagcag
     2341 taaattgcaa agatgtaaag tacatcgttt tgatggcagg cactgctatt cccggcagtg
     2401 aattactatt gcggcaacag gagttgattg gacgtgcgtc cggaatgacg gaagaagctc
     2461 tgaaaacaac ggcagagttg aacacgcata tttataaact tgtaaacgaa atttcagata
     2521 aagataccct aaaagcaaga atgactgatt atttgctggc caggtcaaaa gaattaccag
     2581 atatgaagat tcaggaaggt aaaaaattaa atgacatgat tgaactgcaa cttaatcaaa
     2641 caatttctcc atggatgctg aattttatcc gctacaatcc ggctccaatg cttgaaaaag
     2701 tc
//
LOCUS       DATDNM010000243         2592 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_778061, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000243 DATDNM010000000
VERSION     DATDNM010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2592
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_778061"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VI413_04185"
     CDS             <1..901
                     /locus_tag="VI413_04185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913853.1"
                     /translation="IFTQHDHLYNTVQYNVLNEHKCEKILYLLFCEAKAKLGLIAGLK
                     DGVLTSPFSAPFGGFSSNKNSVRVEVLYEAIQLLDNYAKQNGISAVKFILSPYFYNED
                     LWAKTHYSLNINGYTAIKDINYHLNSSDFPIYKENKISKRTKEYIDKAISHGLIFKQV
                     TNDHDKRTAFKIIKDNRDRKDRPMYIDYNYILEVSKIIPIDFFLILDQNIPIASAIAY
                     HISKHVLQIVFWGNVCDHDTQIRPMYFLAFKLFEFYHTQQFKTIDLTTGSVNGVPNFG
                     LCHFKENIGCTAGLKLIMQKSFL"
     gene            1357..2292
                     /locus_tag="VI413_04190"
     CDS             1357..2292
                     /locus_tag="VI413_04190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913854.1"
                     /translation="MKIEEISDNEYLSLFGPYCHPYNSVQYNSLYKRKCEKTICLLFY
                     ENRTKIGLIAGIKESTLSSPFSAPFGGFTANGHLVKLNELNDAVILLENYSKQNLINN
                     IKFILPPSIYDENLISKTHYSLTLNGYTLLTDINYHFQTANFARYKEDVIEKKARQNL
                     NKAIDFGLIFKQVFSNSEKSIAYDIIKSNKDSKGRPTCLRFDDIIEVSNIIPIDFFLV
                     FTKDHPIASAIVYRVSKNIVHVIYWGDLSESNLYRPMNFLSYKLFEFYSNQRIEIIDL
                     ATASTGGIPNFGLCNFKENIGCTATLKFTISKSIL"
BASE COUNT          963 a          479 c          355 g          795 t
ORIGIN      
        1 aatattcact caacatgatc atctttataa cacagtgcaa tataatgtct tgaatgagca
       61 taaatgtgaa aaaattttat acttactttt ttgtgaggcc aaagcaaaac ttgggttaat
      121 tgcaggatta aaggatggcg tattgacatc gcctttctca gctccatttg gaggattttc
      181 atcaaacaaa aatagcgtca gagtagaagt attgtatgaa gctatacaac ttcttgataa
      241 ttatgccaaa cagaatggaa tcagtgctgt caaatttatt ttgtcacctt acttctacaa
      301 tgaagatctt tgggctaaaa cacattactc tttaaatata aatggataca ccgccatcaa
      361 ggatataaat tatcatctaa actcttctga ttttcctatt tacaaagaaa acaaaattag
      421 caaaaggaca aaagagtata tcgacaaagc tatatctcat ggcttaatct tcaaacaagt
      481 taccaacgat catgacaagc gcacagcttt caagattatt aaagacaaca gagatcgaaa
      541 agacagacca atgtatattg attacaatta cattttggaa gttagcaaaa tcatacctat
      601 tgatttcttt ttaatactag atcaaaacat tcctattgcc tcagctatcg catatcatat
      661 atccaaacat gttttgcaaa ttgttttttg gggaaatgtt tgtgaccatg acacccaaat
      721 aagacctatg tatttcctag ccttcaagct gtttgaattc taccacacac aacaattcaa
      781 aacaattgat ttaacaaccg gttcagtaaa tggtgttcct aattttggcc tctgccattt
      841 caaggaaaac ataggttgta ctgccgggct taaattaata atgcaaaaat catttctgta
      901 attgacgcaa tatgcactat gtccggcaag tatatctgct caacagaatt atataaaaag
      961 tgactcccac gaatggtcta tttttaatta caaatatcaa ctttttgcat atttttcaat
     1021 agcccaccta ccctagccaa cagaatattc tgttcctaca aataatctat caattattga
     1081 aaaccaaaat tttgttttca ctcacagaaa cacaaagctt tgttacacac tgttcaaaag
     1141 cactttctgg cacaagccta aattttaact acccagtaaa cggataacct gcaatatgca
     1201 gcatgacaaa aggaatatta atacgcagcg caaataaatt aataaatatt agaatattta
     1261 ctgtttaaaa acattttaag tcaacattac ctaataaaaa ttgttttaaa tataattgaa
     1321 tctataaata gacagttgta aaataaaaac aatgatatga aaatcgaaga aatttctgac
     1381 aacgaatatc tatcattatt cggcccttat tgccacccat ataattctgt acaatacaat
     1441 agcttataca aacgcaaatg tgaaaaaaca atttgtttac ttttttatga gaatagaaca
     1501 aaaataggct tgatagctgg aattaaggaa agtactttaa gttctccttt ttcagctcca
     1561 tttggaggat ttacagcaaa cggacatcta gtaaagttaa atgagttaaa cgacgcagtt
     1621 atacttctcg aaaattactc gaaacaaaac ctcattaaca acatcaagtt cattttacca
     1681 cccagcattt atgacgaaaa tctgatatct aaaacacatt attcgttgac tttaaatgga
     1741 tacacgctct taactgatat taattaccat tttcagacag caaattttgc gagatataaa
     1801 gaggacgtaa ttgaaaaaaa agcaagacaa aatctaaaca aagcaattga ctttggccta
     1861 attttcaagc aggtttttag taattcagag aaatcaattg cctatgatat tatcaagagt
     1921 aataaagata gcaaaggcag gccaacttgc ttacgttttg acgacattat tgaagtaagc
     1981 aacattattc ctattgattt ttttctggta tttacaaaag accacccaat cgcttctgca
     2041 attgtataca gagtttctaa aaacattgta catgtaattt attggggtga tttgtctgaa
     2101 agcaacttat acagacctat gaatttctta tcctacaaac tattcgaatt ttactcaaac
     2161 cagagaatag aaataataga tttagcaact gcttccacag gagggattcc caattttggc
     2221 ttatgcaatt ttaaagaaaa cattggctgt acagccacgc ttaaatttac tatatcgaag
     2281 tcaatacttt aacgacgtac gcaaatacag cacgctggaa actatccaga tttaaaccga
     2341 ctcaccaaat tataaactaa cctacttgct cagcaggtta agtgtcgctc gccagcctat
     2401 tgacatttta ttcagcttgg ataaacaaac caaattttct acacagttaa aaacgtacag
     2461 ctgcctgaca aagccaaact ttacagatca aattacttaa taaagtctaa agttaatata
     2521 tcagcataag tatttcatac acactctttt cactttaatc cccaaaaaat aacattaaca
     2581 cattcacata tg
//
LOCUS       DATDNM010000244         2378 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_565017, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000244 DATDNM010000000
VERSION     DATDNM010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2378
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_565017"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..285
                     /locus_tag="VI413_04195"
     CDS             <1..285
                     /locus_tag="VI413_04195"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913855.1"
                     /translation="NMPELQNSTVFTGIGNDQEKMRVQIRHERSCELGGESTRWFDLE
                     RWGMFDNQTNISWLKNRDADFDNFTIGVNNRFPIPYREISLVPITQNPGY"
     gene            329..1408
                     /locus_tag="VI413_04200"
     CDS             329..1408
                     /locus_tag="VI413_04200"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6913856.1"
                     /translation="MKKSLLKISIALLFVSTFASCVEKPEETLIWNDPPTAADTLYQN
                     PVFEPDLADPSIVRAADGWFYAYGTENNWSSGIHRIVPIIKSKNLTKWQYVADAFTER
                     PSWKTQGGVWAPDVTFVNSKYYMYYSVSTWGDSNPGIGLAISDLPYGPFVDQGKVLDS
                     QSSGVANSIDPFFIQTGLGRNKKSYLFWGSFQGIYGTELSADLKTPVGTKFKIAGGAF
                     EATYIHEHNGKFYFFGSVGSCCEGADSKYHVCVAFAADIKGPYLDQMGNSILEPGREA
                     TTLISGSRDWGWVGPGHNAEIVTDDRGNDFFIYHAIEVKNPLLAGGATRRPLMMDRIK
                     WVNEWPTIEGGQPSKTLQPAPYFAK"
     gene            1413..>2378
                     /locus_tag="VI413_04205"
     CDS             1413..>2378
                     /locus_tag="VI413_04205"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6913857.1"
                     /translation="MKVFKFIVFCLIFGTYPALAVKFKPVAGADKVVSSTEIKKQGTY
                     KNPVFEPDFADPTIIKAADGWFYGYATENTWTDGVHHLVPVIKSKNLTQWQYVSDAFK
                     VRPSWKKAGGIWAPDVTVANGKYYMFYSYSTWGDSNPGIGLAIAGKPEGPFADQGKLF
                     DSESIGVSNSIDPYLFQTGKGVNRKSYLFWGSFFGIYGIELSADLKSVKGYKFKIAGN
                     AFEASYIKEKKGKFYFFGSVGSCCDGANSQYRVCVAVSTNIKGPYKDKTGVDIINDGV
                     EGTLLISGNKVAGWVGPGHNSKIITDDAGKDYFLYHAIDVSNAHLK"
BASE COUNT          713 a          464 c          553 g          648 t
ORIGIN      
        1 aatatgccag aactgcaaaa ctcaactgta tttaccggta ttggcaacga tcaggaaaaa
       61 atgcgtgtac aaatcaggca cgaacgtagc tgtgaattgg gtggcgaatc tacccgttgg
      121 ttcgatttgg aacgttgggg aatgttcgat aaccaaacca atatttcctg gcttaaaaac
      181 cgtgatgccg acttcgataa tttcacaata ggtgtaaata accgcttccc gataccttat
      241 cgcgaaattt cattagttcc gatcactcaa aatcccggat actaaaacta ttattaatta
      301 tttgacagac agatttaaat tgaacccaat gaaaaagtca ttattaaaaa tatcaatagc
      361 cctgcttttc gtatccacct ttgcttcgtg tgtggaaaag ccagaagaaa cccttatctg
      421 gaacgatccg ccaacagcag cggatacatt atatcagaat cccgtttttg aacccgattt
      481 ggccgatccg agtatcgtca gggccgccga tggttggttt tatgcctacg gaactgagaa
      541 taactggagc tccggaattc atagaattgt tccgatcatt aaatccaaga atcttacaaa
      601 atggcagtac gttgccgatg cgtttaccga aagacccagc tggaaaaccc agggaggtgt
      661 ttgggcaccg gatgtcactt ttgtgaatag caaatactac atgtactaca gtgtatccac
      721 ctggggcgat agcaatccgg gtattggatt ggctatttcc gatcttcctt acggtccgtt
      781 tgtagaccag ggcaaggtgc tcgattcaca atcgtcgggt gtggcgaata gcattgaccc
      841 attttttatt caaaccggcc tcgggcgaaa taagaaatca tatcttttct ggggaagttt
      901 tcagggaatt tacggtacgg aacttagcgc cgatttaaaa acacctgttg gaactaaatt
      961 taaaattgca ggtggagctt tcgaagcaac ttacattcac gagcacaacg gaaaattcta
     1021 tttcttcggt tctgttggta gttgttgtga aggagccgac agcaaatacc acgtttgtgt
     1081 tgcttttgct gcagatatta aagggccata tcttgaccag atgggaaatt caattctgga
     1141 accgggacgc gaggcaacaa cactcattag cggtagccgc gactggggtt gggtaggacc
     1201 ggggcataat gccgaaattg taaccgatga ccggggaaac gatttcttca tttatcatgc
     1261 aattgaagtg aaaaatccat tattagccgg aggtgcaacc cgccgtccgc ttatgatgga
     1321 cagaattaag tgggtaaatg agtggccaac aattgaaggt ggccaaccaa gcaaaacatt
     1381 acaaccagca ccatattttg caaaataata agatgaaagt atttaaattc attgttttct
     1441 gtttgatatt tggaacttat ccggcattgg cagttaaatt caaacctgtt gctggtgctg
     1501 acaaagttgt gtcgtcgaca gaaataaaaa aacagggaac ctacaaaaat ccggtatttg
     1561 aaccggattt tgcagacccg acaatcataa aagctgccga cggttggttc tacggatatg
     1621 ctaccgaaaa cacgtggact gatggtgtac atcatcttgt tccggttatt aaatcgaaaa
     1681 acctcactca gtggcaatat gtatcggatg catttaaggt tcgtccgtcg tggaaaaaag
     1741 ccggaggaat ttgggcgccg gatgtgacgg ttgcaaatgg aaagtattac atgttctaca
     1801 gttattctac ctggggcgac agtaatcccg gtattggcct ggccatagcc ggcaagcctg
     1861 aaggcccgtt tgctgatcag ggaaaactgt tcgactcaga gtcaatcgga gtttcaaaca
     1921 gtatagatcc ttacttattt caaaccggaa agggagttaa ccggaaatct tacctgtttt
     1981 ggggaagttt ttttggaatt tatggaatag aactgtcagc tgatttgaaa agcgtgaaag
     2041 gttacaaatt caaaattgcc ggaaatgcat ttgaagcctc ttatatcaaa gagaaaaaag
     2101 gaaaattcta cttctttggt tctgttggca gttgctgtga tggagcaaac agtcaatata
     2161 gggtttgcgt ggcggtttct acaaacataa aaggccctta caaagataaa accggagtag
     2221 atataattaa tgacggggtt gaaggtactt tactgataag cggtaacaag gtagcgggct
     2281 gggttggccc gggtcataat tcaaaaatta ttaccgatga tgcaggtaaa gattactttt
     2341 tgtaccatgc cattgatgtt tccaatgccc atttaaag
//
LOCUS       DATDNM010000245         3067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1206156, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000245 DATDNM010000000
VERSION     DATDNM010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3067
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1206156"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1142
                     /locus_tag="VI413_04210"
     CDS             <1..1142
                     /locus_tag="VI413_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008618225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6913858.1"
                     /translation="PQLALTWETTTSFNYGIDLGLFDDAYVFDINFYNKRTDDLLFPN
                     VSMSQSSGFDSYAYVNGGIMDNDGWEVNFFANRFIKSKNFSVDFKFNLSNYKNTLIDL
                     DQQLLDTYNGDGFNYKNGSYITHIQEGNSFGSIYGFRYKGVYKYDKYTEEHTDAPVAR
                     DASGKVITDQDGNPRAMYFAYGKESQYKFRGGDAIYEDINHDGSIDDLDIVYLGNCNP
                     KVNGGFGATFRYKNFSCNMLFNFRYGNKIINTARMNAENMYSDNNQSVAVNWRWRKDG
                     DETQMPRALHDVGFNWLGSDRYVEDGSFTRFKYLTFNYAFDNKVLKKFNVNKLSLYLT
                     FNNLFVWTKYTGVDPEIGYGSFGLSMDGSSTPRTKDMTFGISVGL"
     gene            1155..2735
                     /locus_tag="VI413_04215"
     CDS             1155..2735
                     /locus_tag="VI413_04215"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913859.1"
                     /translation="MKINKITIVGLLVVLLFGMTACTEWLDVKPESEIILDEFWKSET
                     DVESVLASCYRGLTEDAVVYRMMVWGELRSDNLTNGVEFHKDRLDMKRILEGDITSSN
                     QYCSWGPFYKVINYCNTILHYAPYVLQRDNNFTQADYQKVKSEVLAIRALCYFYLVRS
                     FKEVPYITDASINDTQDYAQPKNTEAFVISKIIADLDTAKIYARTDYGRKDYNKGRIT
                     RTSINAILADVYLWNEQYDKCVEACNEVMADKTLKLLPAQTTFSNVFYFKNSSESIFE
                     LQFKDDIQENNPVKELYGKSGDPLGEVSFPAPLAYDIESKEVGPHSPFMYTVSNTVVE
                     SANDIRAKDSYESFGSVYFIFKYAGIEREENILTGYSTYFRRSNTANWILYRLSDIML
                     MKAEALVQLKGESNVKKAFELLNTTYLRSNVDQDSLRMSNYTESEYEKLVLRERQREL
                     LFEGKRWFDLVRLARRQKSTSEMNDYIDHKAVGNSTSLGVPVLDAMYMPISRGELEAN
                     PKLEQNPYYQESKSTTVK"
     gene            2769..>3067
                     /locus_tag="VI413_04220"
     CDS             2769..>3067
                     /locus_tag="VI413_04220"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6913860.1"
                     /translation="MKRITSVKQSLIGLFIFLATMGALLTGCDSDDVGGNLYTKTDKM
                     LGEYLRNDPANYSEFTTLLDTTHVFGLLNSYGSYTCFVPNNQAMLKFYALKGKKSL"
BASE COUNT          983 a          487 c          643 g          954 t
ORIGIN      
        1 ctcctcaact ggctttaacc tgggaaacta caacttcatt caattacggt attgatctcg
       61 ggctatttga tgatgcctat gtttttgata taaattttta taataaacgg actgatgatt
      121 tattgttccc caacgtaagt atgtcacaat cttcaggttt tgatagctat gcttatgtaa
      181 atggtggtat aatggataat gatggttggg aggttaattt ttttgccaac cggtttataa
      241 aatccaaaaa ttttagtgtt gatttcaagt ttaatctatc gaactataaa aatacattga
      301 tagatctgga tcaacaattg cttgatactt ataatggcga tggattcaat tataaaaatg
      361 gaagttacat tacacatatt caggaaggaa actcttttgg ttcaatttat ggtttccgtt
      421 acaaaggggt ttacaagtat gacaaatata cagaagagca tactgatgcc cctgtagctc
      481 gcgatgcttc tggaaaagtt attaccgatc aggatggaaa tccacgggct atgtattttg
      541 cctacggcaa agaaagtcag tataaattca gaggaggtga tgctatttat gaggacataa
      601 atcacgatgg tagtatagat gatttagaca tagtttacct tggaaactgt aatccgaaag
      661 tgaacggtgg ttttggagcc acatttcgtt acaaaaactt ttcatgtaac atgcttttca
      721 atttccgcta cggcaataaa attatcaata ctgctcgtat gaatgctgag aatatgtact
      781 cagataataa tcagagtgtg gcagtaaact ggcgttggcg caaagatgga gatgaaacac
      841 aaatgccgcg tgcattgcac gatgtgggat tcaattggtt gggaagtgac cgatatgtgg
      901 aggatggatc gtttacgcgt ttcaaatacc tgacatttaa ctatgctttt gataataaag
      961 tgttgaagaa attcaatgta aataagttga gtttatatct tacgtttaat aatttgtttg
     1021 tttggacaaa atatacaggt gttgatccgg aaatcggata cggttcgttt ggtttgagta
     1081 tggatggttc aagcacccca cgtacaaaag atatgacctt tggaatttca gtaggattat
     1141 aaaaaaatac acaaatgaaa ataaataaaa taacaattgt aggtttatta gtggtacttc
     1201 tgtttggaat gaccgcgtgt accgaatggt tggatgtaaa accggaaagt gaaattattc
     1261 tggatgaatt ctggaaatcg gaaacagatg ttgaatccgt attagcatct tgctaccggg
     1321 gattaacaga agatgctgtg gtctaccgaa tgatggtttg gggcgaactt cgctctgata
     1381 acctgacaaa cggagttgag tttcataaag accgccttga tatgaaacga attctggaag
     1441 gtgatattac ttcatcaaat caatattgct cgtggggccc gttctacaag gtaattaatt
     1501 attgtaatac tattttgcat tatgcgcctt atgtattgca gcgcgataat aactttaccc
     1561 aggcagatta tcagaaagtt aagtcggaag tacttgctat ccgtgcattg tgttacttct
     1621 atttggtgcg ttcgtttaaa gaagtgcctt atattacaga cgcaagtatc aacgataccc
     1681 aggattatgc gcaacccaaa aatacagaag catttgttat atccaaaatt atagcagatt
     1741 tggatactgc aaaaatatat gcccgtacgg attatggtag aaaagattat aataaaggcc
     1801 gtataacacg aacctctatt aatgcaattt tggcagatgt gtatttgtgg aatgagcagt
     1861 acgataaatg cgttgaggct tgtaatgagg taatggctga caaaacattg aaattattac
     1921 ctgcgcagac aactttctca aatgtgtttt atttcaaaaa ttcgtccgaa agtatttttg
     1981 aacttcaatt taaagacgat atacaagaaa ataatccggt aaaggaatta tatggtaaaa
     2041 gtggagatcc attgggcgag gtgtcattcc cggctccgct ggcttatgat attgaatcta
     2101 aagaagtagg tcctcacagt cctttcatgt acactgtctc caatactgtc gttgaaagtg
     2161 ccaatgatat tcgtgcaaaa gattcttatg aatcatttgg atctgtctat tttattttta
     2221 aatatgccgg cattgaaagg gaggaaaaca tccttaccgg atatagcacc tattttcgcc
     2281 gctcaaatac agccaactgg attctttatc ggttgtcaga tatcatgcta atgaaagctg
     2341 aagctcttgt gcagcttaaa ggtgagagta atgtgaaaaa agcctttgaa cttttaaata
     2401 caacttattt gcgttcaaat gtagaccagg attcactccg aatgagtaat tatactgaat
     2461 cggaatacga aaaattggtg ttacgtgagc gccaacgcga attattgttc gaaggtaaac
     2521 gttggtttga tttagtgaga ttagctcgcc gccagaagtc aacttctgaa atgaacgatt
     2581 acattgatca caaagcagta ggtaactcca catcattggg cgtaccggtg ttagatgcca
     2641 tgtatatgcc aatttcgcgt ggtgagttgg aggcaaaccc taaattggag cagaatccat
     2701 attatcagga atcaaaaagc acaaccgtta agtaaccttt aaaaattatg attaaaatga
     2761 aaaaatatat gaaaagaatt acttctgtta agcaatcatt gattggctta ttcatatttt
     2821 tggcaacaat gggtgcactt cttaccggtt gtgactccga tgatgttggc ggtaatttat
     2881 atactaaaac ggataaaatg ctgggagagt atttgcgaaa cgatccagcc aactattcag
     2941 agtttactac attgctggat actacgcatg tatttggatt gctaaattca tatggctcat
     3001 atacttgctt tgtaccaaac aatcaggcta tgttgaagtt ttatgccttg aaaggaaaaa
     3061 aatcgct
//
LOCUS       DATDNM010000246         2505 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_992063, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000246 DATDNM010000000
VERSION     DATDNM010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_992063"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            75..1484
                     /gene="rlmD"
                     /locus_tag="VI413_04225"
     CDS             75..1484
                     /gene="rlmD"
                     /locus_tag="VI413_04225"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009017418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEY6913861.1"
                     /translation="MAKNKKPHPIFTDITITDIAAEGKAIAKINDIVVFVPFVVPGDV
                     VDLQVTRKKSHFMEARPIHFHSYAEQRTEAVCEHYGICGGCKWQILPYSEQIRYKQKQ
                     VVDNLTRIGKIELPEISPILGSARTEFYRNKLEFTFSNKRWRTNEEIAEGKVFETMNA
                     VGFHIPGQFDKVLDINKCWLQTEDSNEIRNEVRRYALEHGLTFFDLRSQEGFLRTMMV
                     RTTSTGELMIIMVFFHEDKEAQDALLQHIADKFPQITSLLYIINSKANDTITDQEVLV
                     FKGNECIYEEMEGLKFKIGPKSFYQTNSEQAYELYKVTRNLAGLTGNELVYDLYTGTG
                     TIANFVAHQARQVIGIEYVPEAIEDAMVNSKLNNIGNTLFYAGDMKDILNATFIEKHG
                     KPDVIITDPPRAGMHEDVINAILFAEPKRVVYVSCNPATQARDLSLLDAAYKVASVQP
                     VDMFPHTHHVENVVLLQKR"
     gene            1649..>2505
                     /locus_tag="VI413_04230"
     CDS             1649..>2505
                     /locus_tag="VI413_04230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913862.1"
                     /translation="MQKQVFQTNSATRWKSFVWFIRIFAVFLVVTITSVIISLIHKRN
                     YDLNVLTYNSKKLPDLNTDKSKTYISKAEEIEFARQIELYRKKHRKSFYREEQNLPQE
                     IKKYLPVRAGFYVNWDMNSAYSLKKNISKMNMVIPEWYFLADSKGKLESRVEEETLDF
                     IHKNKVAVIPMLSNFKQWDTDSTLILLKNEKYRNRLIKEIETVLDTNDFQGINIDFEN
                     FPLAIKPYLIQFSKDLYETLHPAGYLTTIDLNPTDEHVWYKELAPYYDFIFSMAYNEH
                     YPDGEPGSIS"
BASE COUNT          837 a          506 c          468 g          694 t
ORIGIN      
        1 aataattgtt gtatttttgc agcccaaaac aaaagccaat cattcactat taaccgtcaa
       61 ttaccaacca gaaaatggcc aagaacaaaa aaccgcatcc aatttttaca gatataacta
      121 ttaccgacat tgctgctgaa ggcaaagcca ttgcaaaaat aaatgacatt gtcgtttttg
      181 ttccttttgt ggttccgggc gatgtagttg atttacaggt gacacgcaaa aaaagtcact
      241 tcatggaggc gcgtccaatc cactttcata gttatgcaga gcaaaggaca gaagccgttt
      301 gcgagcatta tggcatttgc ggaggctgta aatggcagat tctcccctac tccgaacaaa
      361 ttcggtacaa acaaaaacag gtagttgaca acctgacacg aattggcaaa atagaactcc
      421 ctgaaattag ccctatttta gggtctgcac gtacagagtt ttaccgcaac aaactagaat
      481 tcacattttc aaataaacgt tggcgaacca acgaagaaat tgcagaagga aaagtatttg
      541 aaaccatgaa tgctgttggt ttccatatcc cgggccaatt tgataaagtg cttgacataa
      601 acaaatgttg gttacagact gaagattcca atgaaattcg caacgaagta cgccgttacg
      661 ccctggaaca tggcttgact ttcttcgatt tacgcagcca ggaaggattt ttacgaacca
      721 tgatggttcg tacaacttcc acaggcgaat tgatgataat catggttttc ttccacgaag
      781 acaaagaagc acaagatgcc ttattacaac atattgctga caaatttccg cagattactt
      841 ccttgctcta cattatcaat tccaaagcga atgacactat caccgatcag gaagtgttgg
      901 tattcaaagg caacgaatgt atctacgaag aaatggaagg cctgaagttc aagattggcc
      961 caaagtcatt ctaccagaca aactccgaac aagcatatga attgtacaaa gtcacccgca
     1021 atctggccgg actcaccgga aatgaactgg tatatgacct ttacaccgga acgggaacca
     1081 ttgcaaattt tgttgcacat caagcccggc aggttattgg aattgaatat gttccggaag
     1141 ctattgaaga tgctatggtt aattcaaagc tgaataatat cgggaacacc ctgttttatg
     1201 ccggagatat gaaagatatt ctgaatgcca ctttcattga gaaacacggc aagccggatg
     1261 ttatcattac tgaccctcca cgggcaggaa tgcatgaaga tgttattaat gctattcttt
     1321 ttgcggaacc taaacgtgta gtatatgtca gttgcaatcc tgccacgcag gcacgcgatt
     1381 taagcttgct agatgcagct tacaaagtag cttcagttca acctgttgac atgtttccgc
     1441 acacacatca tgttgagaac gtggttcttt tgcaaaaaag ataagaacct ataactttat
     1501 ttatgagatc tattggattc tggttaattt ttgccaagta tgaaagcaaa taattaattt
     1561 ttcgcaatcg ttagacgaaa aaaccttgaa ttttgttctg tgaacgtatt tttgttcaaa
     1621 atttctgaac tttaaagttt atattgatat gcagaaacaa gtttttcaga caaattcagc
     1681 gacgcgctgg aagagttttg tatggttcat acgtattttt gctgtttttt tagtcgtaac
     1741 aattacatcg gtaattatat cactaattca caaacgcaat tacgatttaa atgtactcac
     1801 ctacaattca aaaaaactgc ccgacttaaa tacggacaaa tcaaagactt acatttcaaa
     1861 agcagaagaa attgaatttg cccggcaaat tgaactttat cgaaaaaaac atcggaaatc
     1921 attttaccgc gaagaacaaa atttaccgca ggaaataaaa aaataccttc cggtacgggc
     1981 aggtttttac gtaaattggg acatgaactc ggcatattct ctaaaaaaga atatcagcaa
     2041 aatgaatatg gtgatccctg aatggtattt tctagccgat tctaaaggga aactagagtc
     2101 ccgtgttgaa gaagaaaccc ttgatttcat tcataaaaat aaagttgcag tcattcccat
     2161 gctaagtaat ttcaagcaat gggacacaga cagcacactg attttattga aaaatgaaaa
     2221 atatcgcaac cgtttaatca aggaaattga aacggtttta gacaccaatg acttccaggg
     2281 aattaacatc gatttcgaga acttcccgtt ggcaataaaa ccatatttaa ttcagttttc
     2341 caaagattta tacgaaactc tgcacccggc cggatatctg actaccatcg acctcaaccc
     2401 aaccgacgaa catgtttggt acaaagaact tgcaccttat tacgacttta ttttctcgat
     2461 ggcatacaac gaacattatc ctgacggcga gcccggcagt atttc
//
LOCUS       DATDNM010000247         2043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_778518, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000247 DATDNM010000000
VERSION     DATDNM010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_778518"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..1401
                     /locus_tag="VI413_04235"
     CDS             178..1401
                     /locus_tag="VI413_04235"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913863.1"
                     /translation="MKNSFSQFLSFAVLGGLLCVGCSAQNEPPLQEEVVTSTEVGSGE
                     TNGYTLVWQDLFNGTKLDETNNWVIEVNGDGGGNSELQYYRRENISVGVEPVSGANCL
                     IIKAKKESYSGKTCTSGRLKTAGKMSFKHGKIEARIKLPKTANGLWPAFWMMGADYAT
                     VGWPKCGEMDILEMGNVNGINRGTQDKYFSTWFHWGESWNGGSYPNWGKDFTSTTGIQ
                     DDFHLFTLIWDDAAVKSYIDLDKNPAATPICEMVINGADVAGNAAHYFHKKFYAIFNL
                     AIGGNFTQIWDINKITALNAANNYETYMYVDYIKVYQQGVAGEEYSGPKLTATSKVIA
                     DKAFKMYPNPATDRLMIQAANAIARVTIFDLSGKEILNIRNSNSIDTSTLAKGNYVVK
                     IEDENGKTESQQLTK"
     gene            1704..>2043
                     /locus_tag="VI413_04240"
     CDS             1704..>2043
                     /locus_tag="VI413_04240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913864.1"
                     /translation="MIRSNRLLAIILLIVLVGCESKYQKINITDITKDSKLILETENK
                     DPIRIYMRFYGEVDGTASITIVDDYSYKKTYKLERGKVEYNIDCDWYNQKCIIIYSPE
                     NVVNGELHVEY"
BASE COUNT          667 a          362 c          438 g          576 t
ORIGIN      
        1 acaatttatc tggacggtaa agttgctgca tttgtcactt tgcctgagtc cgattcatgg
       61 aacacattca ctataccact cgattttcca acaggcaaac acgtaataag gatgcaggtt
      121 tcaaaaggaa ataccagctt aaattggcta aaattaaatt tataactcac atattcaatg
      181 aaaaactcat tttctcaatt tctttctttt gcagttcttg gaggcttgtt atgcgtcggt
      241 tgttctgctc agaacgaacc gccacttcag gaagaagtgg ttacgtcaac tgaagtcggt
      301 tccggcgaaa ctaacggcta cacccttgta tggcaggatt tattcaacgg aacaaaactc
      361 gacgaaacca ataactgggt gatagaagtg aatggcgacg gtggtggaaa ctctgaattg
      421 cagtattatc gtcgcgaaaa catatcggta ggcgttgaac ctgtcagtgg agccaattgc
      481 cttattatta aagccaaaaa agaaagttat tcgggtaaga cctgtacgtc gggacgcttg
      541 aaaacggctg gaaaaatgtc ttttaagcac ggaaaaatag aagcgaggat aaaattaccc
      601 aaaactgcca acggactttg gcccgcattc tggatgatgg gagcagacta tgccactgtt
      661 ggttggccta aatgtggcga aatggatatt ctggaaatgg gcaacgtaaa cggtataaac
      721 aggggcactc aggacaagta tttcagtacc tggttccact ggggcgaaag ctggaatggt
      781 ggttcttatc ccaactgggg caaggatttt accagcacca ccggtattca ggatgatttc
      841 cacctgttta cgcttatctg ggacgacgct gctgtgaaat catacatcga tctggataaa
      901 aatcctgcgg caacgcctat ttgcgagatg gtgattaacg gggcggatgt ggcaggcaat
      961 gcagcacatt atttccataa gaagttttac gcgattttca acctggccat cggcggtaac
     1021 tttacccaaa tctgggatat caacaaaatt acggctttga atgctgccaa caattacgaa
     1081 acatacatgt acgtggacta tattaaagtg tatcagcaag gcgtggcagg cgaggagtat
     1141 agcggtccaa aactaacggc aacgtcgaag gttattgccg ataaggcctt caaaatgtat
     1201 cccaatcccg caaccgaccg tttaatgata caagctgcca atgccattgc gcgggttacc
     1261 attttcgatt tgtcgggtaa agagatattg aacatacgca acagtaattc aattgatact
     1321 tccacgctgg cgaaaggaaa ttatgtagtc aaaattgaag atgaaaatgg taaaacagaa
     1381 tcgcaacaac tcacaaaata attaattggt tttttctcag tttttttata ggtttaattt
     1441 caggtattag ttaggtaaga tagccgctcc gatatatagg ggtggctatt tctttttgat
     1501 ttctgcgttt gaaatagagc tagttttcca atacttttcc ctagtagaaa aaggcacaga
     1561 acatttgtct tttcctgtta caaaaggatt atatttgcaa ctaatatgga agtcaggaac
     1621 ttccttttaa cagcgacgta ggctggagca ataagccgaa caacggatgt aatttagtaa
     1681 tattacattt aatcctaatc ctaatgataa gaagcaatag attattggct attattttgt
     1741 taattgtact agtaggttgt gaatcaaaat accagaaaat aaatatcact gatattacaa
     1801 aagattcaaa attgatatta gaaactgaaa ataaagatcc aattagaatt tacatgagat
     1861 tttatggtga agtagatgga actgcctcaa ttacaatagt tgatgactat agctataaaa
     1921 aaacatataa acttgaaaga ggtaaagttg aatataatat tgattgcgat tggtataatc
     1981 aaaagtgtat tattatttat agtcccgaaa acgtagtaaa tggggaacta catgttgaat
     2041 ata
//
LOCUS       DATDNM010000248         4836 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_458426, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000248 DATDNM010000000
VERSION     DATDNM010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4836
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458426"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..584
                     /locus_tag="VI413_04245"
     CDS             <1..584
                     /locus_tag="VI413_04245"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913865.1"
                     /translation="VPHIEGTGRIYGNIYFESSRLNDTLLVKSALMDTYGSPDYALAV
                     NATVLLLNRYNEPVAWTLTDVNGNYIFDKLPVDSFTVVSETANAFAYLPVGLTNESRE
                     ANADMMLKDMAGVSMVNNPEGTDLIIYPNPAHDRFKVLLNEDIQIKIYNVAGQLVLVR
                     NLFAGENTVETGTLKPGVYIIHVGNRTQKLFKN"
     gene            complement(707..1573)
                     /locus_tag="VI413_04250"
     CDS             complement(707..1573)
                     /locus_tag="VI413_04250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEY6913866.1"
                     /translation="MQNTILKLSDKLPLTCSRAGNCCHGNKVLLNPWELACLAGEKKI
                     SAREFRDLYTEWNGVRLWFNGAVGYNGKQACSQYVNETGCSVHIARPLACRLFPLGRQ
                     IQNGETVYMHQGRTFPCLEGCSEVLNLPYCSVTEYLVGQQTERWELVQNTYLELVQLL
                     ADIAFELLLDSGLAESGDKKTLQQWRLMANESPEQLAERIGQNWLDQLTIPNLDIDTQ
                     QPQLFCEQHVILLQQQLQTSFGNTQTFEELQEAAVLVMSLALLLSISVGAEPRLLLSH
                     WIDIAKSNGALE"
     gene            complement(1687..3207)
                     /gene="rny"
                     /locus_tag="VI413_04255"
     CDS             complement(1687..3207)
                     /gene="rny"
                     /locus_tag="VI413_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEY6913867.1"
                     /translation="MENIIIGLIALVAGAGGTFVLLRFVNKRAIAEAAAEAELLKKNK
                     LIEAKEKFIALKAEHEQQVQERNAKVQEKEVKLQQREMQLNQKQSEVQRKINEVETLK
                     DNHEQQIHALEGKKKELDHLQHQAQMELETISGLSAEQAKERLVEALTEEAKTKAMSY
                     INDIMEEAKMTANKEAKKIVVQSIQRVATETAIENSVTVFHIESDEIKGRIIGREGRN
                     IRALEAATGVEIIVDDTPEAIVLSAFDPVRREIARLSLHQLVTDGRIHPARIEEVVNK
                     VRKQVEEEIIEIGKRTTIDLGIHGLHPELIRMVGKMKYRSSYGQNLLQHSREVANLCA
                     TMASELGLNPKKAKRAGLLHDIGKVPDDEPELPHAILGMRLCEKYKEKPDICNAVGAH
                     HDEVEMETLIAPIVQVCDAISGARPGARREIVEAYIKRLNDLENLALSYPGVLKTYAI
                     QAGRELRVIVGADKIDDKETELLSFDIAKKIQDEMTYPGQVKITVIRETRAVSYAK"
     gene            complement(3362..3655)
                     /locus_tag="VI413_04260"
     CDS             complement(3362..3655)
                     /locus_tag="VI413_04260"
                     /inference="COORDINATES: protein motif:HMM:NF017016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HEY6913868.1"
                     /translation="MKDDKFTINVTVNGFKMPLSIPRKDEELYRNAEKLVEKYINHFQ
                     KLYNQRSTEQILILAAFQIAVLVAKQELSEDVVPLAEKIQALDEELKALLYKE"
     gene            complement(3661..3957)
                     /locus_tag="VI413_04265"
     CDS             complement(3661..3957)
                     /locus_tag="VI413_04265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913869.1"
                     /translation="MANKYEELTHAFETKLRKLISEYKSLQEQNTLLKADLDRKQTDL
                     MMAHQEILELRKNYDHLQLAKNMLGGSEAAKAESKQQIAKMVREIDKCLALLDE"
     gene            complement(4416..>4836)
                     /locus_tag="VI413_04270"
     CDS             complement(4416..>4836)
                     /locus_tag="VI413_04270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913870.1"
                     /translation="RLSYFHFAIISIAMFLLSCTITDTTTNNFSYVINNTSDKELKIV
                     VKTNRVDTTLNITAHTDGTIYNGYEEFVGDAPSFGNPFFLKVFSVLKIEAADKSTITL
                     DYLNQSNWKSSTSGISMGSTKTTTTIYKINIANSNFQ"
BASE COUNT         1310 a         1005 c          938 g         1583 t
ORIGIN      
        1 ttgttccgca cattgaaggt acggggcgta tctacggaaa tatttatttt gaatccagtc
       61 gacttaatga tacattgctg gtgaaaagtg cattaatgga tacttatggt agtcctgatt
      121 atgcccttgc tgttaatgcc actgttttgc tgctgaacag gtataatgag cctgtggcat
      181 ggacattgac tgacgtaaat ggaaattata tatttgataa acttcctgtt gattcattta
      241 ctgttgtttc ggaaacagcc aatgcttttg catatttacc cgtaggactt actaatgaaa
      301 gtcgcgaggc caacgcagat atgatgttaa aagatatggc cggtgtttca atggttaata
      361 atccggaagg cacggattta atcatttacc cgaatcccgc tcacgatagg tttaaagttt
      421 tgctaaatga agatatccaa atcaaaattt ataacgttgc cggacaatta gtgttagtca
      481 ggaatttatt tgccggcgaa aatacagttg aaacgggcac tttaaagccg ggagtttaca
      541 ttattcatgt tggaaacagg acgcaaaaac tttttaaaaa ttagcatgat ttagaaatgt
      601 agatataaat agcagagctg cataattcat tttatacggc tatgcttttt agtttttatt
      661 tgaataagtt tcttagaact aactcgtcaa tttatttgat ggatttttac tccaatgcac
      721 cattgctttt agctatatct atccaatggc tcaacaacaa acgtggttca gcaccaacag
      781 aaatagataa aagtaaagcc agtgacatca ctagtactgc agcttcctga agttcttcga
      841 aggtctgggt atttccaaat gaagtttgca actgttgttg gagcagtata acatgttgct
      901 cgcaaaataa ttgtggttgc tgggtatcaa tgtccagatt cggaatagtc agctgatcga
      961 gccagttctg gccaattctt tctgctaact gttccggcga ttcattagcc ataagtcgcc
     1021 attgttgtaa cgttttctta tcgcccgatt cggccaatcc actatccaga agcaactcaa
     1081 aagcgatatc ggctaatagt tgtaccaact ccagataagt attctggacc agttcccatc
     1141 tttctgtttg ttgtccaacc agatattcag ttacactgca atagggtaaa ttcaacacct
     1201 cgctacatcc ttccagacac gggaacgttc gaccctgatg catataaact gtttcaccgt
     1261 tttgaatttg ccgcccaagc ggaaagagcc ggcatgcaag cggccgggca atatgaacac
     1321 tacaaccagt ttcatttaca tactggctgc aggcctgttt cccgttataa ccaaccgcgc
     1381 cattgaacca caaccgtaca ccattccatt ctgtgtacaa gtctctgaat tcacgggcac
     1441 tgattttctt ctcgccggcc agacaagcca gttcccacgg attgagcaat accttattac
     1501 cgtggcagca atttccggca cgtgaacagg taagtggtaa tttgtcggac agtttgagta
     1561 ttgtattctg catttctttt ctgaatgaag tagctaattt agaattcaaa taaaaaaccg
     1621 ataaacagta agatgctgtc catcggtttt taatattatc tcaattgaca gttgtcaatt
     1681 cgttgcttat tttgcgtagc ttacggcacg ggtttcacgg ataactgtga tttttacctg
     1741 acccggataa gtcatttcat cctggatttt cttggcaata tcgaacgaca ataattcggt
     1801 ttctttgtcg tcaattttgt cagcacccac aattacgcgc aactcgcgac cagcctgaat
     1861 ggcataagtc ttcaatacgc ccggataaga caatgccagg ttttccaaat cgttcagacg
     1921 tttgatatag gcttcaacga tttcgcggcg tgctccggga cgtgctccgg agatagcatc
     1981 acacacctga acaatcggtg caatcaatgt ttccatttcc acttcgtcgt ggtgagcacc
     2041 aacagcgttg caaatatccg gtttttcttt gtatttttcg cacaaacgca taccaaggat
     2101 agcgtgtggc aattccggtt catcatcagg caccttgcct atatcgtgta agagtccggc
     2161 acgttttgct tttttaggat tcagtccaag ttccgaagcc attgtagcac aaaggttagc
     2221 tacttcacgt gagtgttgca gcaggttttg gccgtacgac gaacgatatt tcattttacc
     2281 caccatacga atcagttcag gatgcaatcc gtgaattcct aagtcaatag tggtacgttt
     2341 accaatttca atgatttctt cttccacctg tttgcggact ttgtttacca cttcctcaat
     2401 acgggcaggg tgaatacgtc cgtcggttac caattggtga agcgataggc gagcaatttc
     2461 gcggcgaaca ggatcgaatg ccgaaagaac aattgcttcg ggagtatcat ccacaatgat
     2521 ttcaacgccg gtggctgctt ccagtgcgcg gatattacgt ccttcgcgac caataattcg
     2581 tccttttatt tcgtccgatt caatgtgaaa aacggttacc gagttttcaa tggctgtttc
     2641 agttgctaca cgttgaatac tctgaactac gattttcttt gcttctttat tggctgtcat
     2701 tttagcctct tccataatgt cgttgatata cgacatggcc ttggttttgg cttcttctgt
     2761 caatgcttcc accaatcttt ctttggcctg ttctgccgaa agtcccgaaa tggtttcaag
     2821 ctccatttgc gcctgatgtt gaaggtgatc cagctctttt ttctttcctt caagcgcatg
     2881 gatttgttgc tcgtgattat ctttcagtgt ctcaacttcg tttattttgc gctgaacctc
     2941 actttgtttc tggttcagct gcatttcgcg ttgctgaagt tttacttctt tttcctgcac
     3001 tttagcattg cgctcctgca cctgttgttc atgttctgct ttcagggcta tgaatttctc
     3061 ttttgcttct ataagcttgt ttttcttaag cagttcagcc tctgctgctg cttctgcaat
     3121 tgcccgtttg ttgacaaaac gcagcaggac aaatgtcccc ccggctccgg caacaagtgc
     3181 aatcagtccg attattatat tttccatctt gtaaatttaa gtatgtaatt gagaattatt
     3241 gtattaacgt ttaaacataa aaaaagcatt gcattgaaag aataaaactc cccattctaa
     3301 agaagttttt cagacaatgt aatgcggaaa tgtggtttag aaaaaaaacg aaataaatgg
     3361 tttattcctt gtatagtaat gctttcaact cttcgtccaa cgcctggatt ttctcagcta
     3421 aaggaacaac gtcctcgcta agctcctgtt ttgcaaccag aactgcgatt tgaaaagctg
     3481 ccagaataag aatctgctca gtagaccgtt ggttgtatag tttttgaaaa tgatttatat
     3541 atttttcaac caatttttcg gcgttcctat atagttcctc gtctttacgt ggaatgctta
     3601 atggcatttt aaagccatta acagtaacat ttatagtaaa tttatcgtct ttcatacgct
     3661 ctattcatcc aaaagagcca aacacttgtc aatttcccgc accattttcg cgatttgttg
     3721 tttggattca gctttcgcag cttccgatcc gcccagcatg tttttagcaa gttgtaaatg
     3781 gtcgtaattt tttcgaagtt ccaaaatttc ctgatgagcc atcattaaat cagtttgttt
     3841 ccggtctaaa tcagctttta acagggtgtt ttgttcttgt aacgacttgt actccgaaat
     3901 cagttttcgc agttttgttt caaatgcgtg ggtaagttct tcgtatttat tagccatttt
     3961 tcgaaaaaat ctatacaaaa atacgctttt gctttgagat aggaaaactt tttgggcttt
     4021 tttcgataaa atcgttgctg taatgcggct aaaacacaaa gtgtaataaa gaatagggta
     4081 atatattcta ataaattaat aagataagca ggtaattgct ggtgtgggtc ttgctacaac
     4141 gttgcaagtg tcccccgttc cccgtaactt ataaaatccg gtatctgatg tttggcgaag
     4201 gctttggtgt ggttgtgcaa cagccaccga agccttcgcc aaacaaacac tttgccaact
     4261 tacgcccaac gggggatgaa gtgctatttg tcattcatat tcgttttaaa ccaacaaaaa
     4321 taaaaaacgg caggcataca cccaccattt cctatcctgt tcttgaatta caagctttca
     4381 ttcaggctac tccaaattta gtattttacc aactcttact gaaagttcga gttggcaata
     4441 ttaattttat aaatagttgt ggtggttttt gtactaccca tactaatacc tgatgtggat
     4501 gacttccagt tagattgatt aaggtagtcc aatgtaattg ttgatttatc ggcagcctca
     4561 attttcaaaa cactaaatac tttcaaaaaa aacggattcc caaatgaagg agcatctcca
     4621 acaaattctt cgtacccatt gtaaatagta ccatccgtat gtgctgttat atttaaagtt
     4681 gtatcaaccc tattggtttt gacaactatt ttgagctctt tatccgatgt gttatttatc
     4741 acgtatgaga aattattggt ggtggtatct gtgatggtac atgataataa gaacatggct
     4801 atggaaataa ttgcgaaatg gaaataactt aatcta
//
LOCUS       DATDNM010000249         2863 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_671615, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000249 DATDNM010000000
VERSION     DATDNM010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2863
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671615"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(206..1810)
                     /locus_tag="VI413_04275"
     CDS             complement(206..1810)
                     /locus_tag="VI413_04275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6913871.1"
                     /translation="MKQKFNKYYIGIISIILIICTSCNDLDQVPTDKFTDETYWYSTE
                     KASYVLNMAYSQMMNDSYFFGNEALSDNIFVCRTSNEKLISSGIANASNVRFASEWSD
                     CYGGIRTCNTFLENVDRVPNMNAALKARMNAEARFIRASLFFRLTTWYGDVPLFEKNL
                     TAQESKVIARSSHAEVLKFVRAELDSATKYLPASYEKDDLGRVTSGAAIALKARTYLY
                     ENDWANVASTCQQIIDSKVYSLFPDYAGLFSIANMHNSEVILNIEYVPGLRTWSQYFD
                     FAPPSAGRRVNQQAPTQELVDTYLMLNGDSIRATGSGYVESNPYVNRDPRLDATVLFD
                     GGKWRMPNGTDLTIKIKPGSGTADEYKAGSGNNSLTGYYMKKYYDPTYTGDFSSGLNL
                     ILIRYADILLMYAEAQNELGLMNQTIWDMTIKAIRARAGFTTSNALDFKSSWTQDDLR
                     KIIRNERRTELALEGTRIFDIRRWKTAEVVLNGYPHGAQYGSPSVDNGYIRLDKRSFN
                     PNRDYLFAVPQAQKDLDPNLGQNPGY"
     gene            complement(1825..>2863)
                     /locus_tag="VI413_04280"
     CDS             complement(1825..>2863)
                     /locus_tag="VI413_04280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010801246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6913872.1"
                     /translation="ASFNIGFDGTLLNDKLYASFDYFNKVTSRILLDPVYPSVLGTTV
                     GTENAGEMQNQGWEFTVGYRTTTDEFRHDVSFNIADSKNKMLIYKGYEVIHSNDDMSQ
                     IIRVGTPIASYFGYKTDGYFKSFEDIQNSAIPVGMDASQLAPGDVKYVDINNDGVIDP
                     KDRQILGNAFPRYTFGVNYNLTWKGFDLNMLINGVGQRTMYLRGELIEPFHANYSYTM
                     YQHQLDFWTPVNTDARWPRLALAGSTSNLNNYGYSSDIHVLNAAYVRLKNIAIGYTIP
                     KNITSKLGIQKLHLSVNAQNLLTLSSLTFFDPESTEFGSDMGGPNGTGANSGRSYPTL
                     KYVGFGLDLEF"
BASE COUNT          861 a          618 c          512 g          872 t
ORIGIN      
        1 cagtagcaga agcctgcaag acaaccgatt tattattcac cggttcataa agtgtttgta
       61 ccgaggtaac attcaggttt ttcagcgtat cgtcattttt gcaacctaca aaagacaaaa
      121 ccgcacatat gaacaataca atttttatat atgatgtttt cataaaatac attatttaaa
      181 tttttattat ttagttagac ttcaattaat agccggggtt ttgtcctaag ttcggatcta
      241 aatctttctg agcctgcggc actgcaaaaa gataatcgcg gtttggattg aacgaacgtt
      301 tatccaagcg aatataaccg ttatcaacac ttggcgagcc atattgtgct ccgtgaggat
      361 atccattcaa taccacttcg gcagttttcc agcgacggat atcaaatata cgagttcctt
      421 caagggctaa ttctgtgcga cgttcgttgc gaataatctt tcgcaagtca tcctgagtcc
      481 agctcgattt gaaatccaat gcattcgaag ttgtaaatcc ggcacgtgcc cgaatagctt
      541 tgatcgtcat atcccaaatc gtttggttca tcaaacctaa ttcattttga gcctcggcat
      601 acatcaacaa aatatccgca taacgaatca gaatcaaatt caaccctgag ctaaagtctc
      661 cggtataagt cggatcgtag tattttttca tataataacc ggtcaacgaa ttatttccac
      721 ttccggcttt atattcatct gcagttccgc ttccgggttt aattttgatt gtcagatctg
      781 ttccattggg cattctccat ttgcctccgt caaaaagaac agtggcatcc agacgcggat
      841 cacgattcac atacggattg ctttcaacat aacccgaacc agtagcacga atggaatctc
      901 cattcagcat cagataggtg tcaaccaatt cctgtgttgg tgcttgttgg tttacacgac
      961 ggccggctga tggtggtgca aaatcgaaat actgactcca ggtacgcaag ccaggaacat
     1021 attcaatatt caatataact tctgagttgt gcatattggc tatcgaaaat aatcccgcat
     1081 aatcagggaa caacgaataa actttgctgt caattatttg ctgacaggtt gaagctacat
     1141 ttgcccaatc gttttcatac aaataagtcc gcgctttcaa ggcgatagcc gctcctgaag
     1201 taacacgtcc caagtcatct ttttcataag aagccggaag atacttagtt gccgaatcca
     1261 attcagcccg cacgaattta agtacttctg catgcgaact gcgagcaatt actttagatt
     1321 cctgagcagt cagattcttt tcaaaaagcg gcacatcacc ataccaggtt gtgagtctga
     1381 aaaataaaga tgctctgata aagcgagctt ctgcattcat tctggctttt agcgcagcat
     1441 tcatattcgg aacccgatct acgttttcga gaaatgtatt acaggttctg attccaccgt
     1501 agcaatcaga ccattctgaa gcaaaacgca cgttggaagc atttgcaatt cctgaagaaa
     1561 tgagtttttc gttcgatgtc ctgcacacga aaatgttatc agacaaagcc tcatttccga
     1621 agaaatagct atcgttcatc atttggctgt aagccatgtt caatacatac gatgcttttt
     1681 cggtcgaata ccagtatgtc tcatcggtga acttatcggt tggtacctga tccaaatcgt
     1741 tacaagaggt acagattata aggattatcg aaataatgcc aatataatat ttattaaatt
     1801 tctgtttcat aatttgttct atttttaaaa ttccaaatcc aatccaaacc caacatactt
     1861 gagggtaggg taactacgtc cgctattggc tccggttcca tttggaccac ccatatcact
     1921 tccaaattca gttgattcgg gatcaaaaaa tgtaagtgaa gatagtgtca gtaaattttg
     1981 tgcattcacg cttaaatgca gcttctgaat acccaatttg gaagttatgt ttttgggaat
     2041 tgtataaccg atagcaatat ttttcaatcg cacgtaagcc gcattgagaa catgtatatc
     2101 agagctataa ccataattat tcaaattaga tgttgatccg gcaagtgcaa gtctcggcca
     2161 gcgggcatca gtattgacag gagtccaaaa atccaactgg tgttggtaca tggtatacga
     2221 ataattagca tgaaacggct caatcagctc accacgaaga tacattgttc tttggcctac
     2281 accgttaatc aacatattta aatcaaagcc tttccatgta agattgtagt ttacaccaaa
     2341 agtataacgt ggaaatgcat ttcccaatat ttggcgatcc ttcggatcaa ttacaccatc
     2401 attgttgata tctacgtatt tcacatctcc cggtgccaat tgcgaagcat ccatacctac
     2461 cggtattgca ctattttgta tatcttcaaa acttttgaaa tagccatcag ttttgtatcc
     2521 aaaataagat gctattggag ttcccacacg gatgatctga gacatatcat cattcgagtg
     2581 aattacctca taacctttat aaatcaacat tttatttttt gaatcagcta tattaaaact
     2641 cacatcatgt ctgaattcat cggtggtagt cctatatcca acagtaaact cccaaccttg
     2701 attttgcatt tctcctgcat tctcagttcc tactgttgtt cccaaaacag atgggtacac
     2761 cggatccaat aaaatccggg atgtcacttt attgaaataa tcgaaagatg cgtacagttt
     2821 atcattcagt aaagttccat caaacccgat attaaagctg gca
//
LOCUS       DATDNM010000250         2326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1525960, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000250 DATDNM010000000
VERSION     DATDNM010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1525960"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..682
                     /locus_tag="VI413_04285"
     CDS             <1..682
                     /locus_tag="VI413_04285"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HEY6913873.1"
                     /translation="EAGGGSINYLKVGLKYDSRDQLACPMKGIFTEAVIQTAPKFLND
                     KPHSKFAIIHRQYFTLAKDLSFAYRLDYQSTVGKERVPYYAQPLLITSYLIAATNQGL
                     GGKSSVRGILRNRIIGDDVAFGNFEFRYKFLRFEWLKQNFYLGTNVFFDSGIILKPIE
                     LNLTPVSATDKALYFNTYRAGKFHSAAGVGLKIGWNENFVISADFGKAFNKADGNTGM
                     YIGLNYLF"
     gene            730..1827
                     /locus_tag="VI413_04290"
     CDS             730..1827
                     /locus_tag="VI413_04290"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6913874.1"
                     /translation="MWYLFGCVTFVSFLYLILILIFIIGWKRIYAFVPKGNESIKTLI
                     SVVVACRNEEEHVRQLIACMAQQSNQNFELIVVNDHSTDATRNYVKAAQVQYPKIQLV
                     DAVGYGKKNALKEGILNANGNLIVTTDADCLPSYHWLESIACYQRKNNCDLIICPVKL
                     SGKDSFFTYLQVLEFTSLVASAAGAAGMGMPILCNGANLVFTKKTWMASKEDLHPEEQ
                     SGDDIFLLESVKKRGGKIRFLKSESAFVTTKQAGTLTDLIKQRRRWSAKSRLYTDWQL
                     IFTALVVFSVCLLLLALAVLSFYKMIFLYVLVALFLFKYLLDSIFLSTVSKFFQLNNI
                     WFFSFLLSIFYPFYIVSVAVSSLVFRPKKWN"
     gene            complement(1852..>2326)
                     /locus_tag="VI413_04295"
     CDS             complement(1852..>2326)
                     /locus_tag="VI413_04295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913875.1"
                     /translation="YIKYYLTIGLLALQFASCDDTYISPIPDFPVYLELNLTTTYPTF
                     RNSSNKSLIFIKGTTPNIPERAATGYGGILVYSGVMLDDAGNTIYYAFDMSCPYEHKQ
                     KILVHPNDKGQAICDSCKTIFDISYGIGNPTSGPAKQTLRRYKTNLSGDILYITR"
BASE COUNT          667 a          378 c          491 g          790 t
ORIGIN      
        1 tgaagctggg ggtggtagta ttaattattt gaaagtaggt ttgaagtatg attcgcgcga
       61 ccagttggct tgcccaatga aggggatttt tactgaagct gtgattcaga cagcaccaaa
      121 gttcctgaat gataaacctc attctaaatt tgcaattatt caccgacagt attttacatt
      181 agcaaaagat ttgtcatttg cctataggct tgattatcag tcaacggtag ggaaagaaag
      241 agtcccatat tatgctcaac cacttttgat tacgagttat ctgattgctg caaccaatca
      301 agggcttgga ggtaagagct ctgttcgtgg tattttgcgt aaccgcatta ttggagatga
      361 tgttgcattt ggaaattttg aattcagata taaattcctt cgtttcgaat ggctaaagca
      421 gaatttctat ttggggacta atgtgttttt cgattcgggg attattctga aaccgataga
      481 actgaattta acgccagttt cggctacaga taaagccctg tactttaata cttatcgggc
      541 tggtaaattc cattctgctg ccggtgtagg ccttaaaatt ggttggaatg agaacttcgt
      601 tatctctgcc gatttcggaa aggctttcaa taaagcagat ggaaatacag ggatgtatat
      661 cggactgaat tatttgttct agacaattga tttttttata aatcttgaaa tgtaagtaat
      721 tttcatagca tgtggtattt gtttggttgt gtaacatttg ttagttttct gtatttaatt
      781 ctcatcctaa ttttcattat tggctggaag cgaatatacg cgtttgtacc caaaggaaat
      841 gaatcaataa aaacattgat ttctgttgtt gttgcttgcc gtaatgaaga agagcatgtc
      901 cgacaactca ttgcttgcat ggctcaacaa agcaaccaga attttgagtt gatagtggtt
      961 aacgatcact caaccgatgc aacccgaaat tatgttaaag cagcacaggt acagtaccct
     1021 aaaattcagt tggtggatgc tgttggatat ggaaagaaaa atgcacttaa agagggaatc
     1081 ttaaatgcca atggaaacct gattgttacg accgatgctg actgcctgcc atcgtatcac
     1141 tggttggaat ctattgcatg ctatcagcga aaaaataact gcgatttgat tatctgtccg
     1201 gtaaaattgt ccggtaaaga ttcttttttc acttaccttc aggtattgga gtttacaagt
     1261 ttggttgctt ctgctgctgg tgctgcaggt atgggaatgc ctattttgtg taacggtgca
     1321 aatcttgttt tcacaaaaaa aacatggatg gccagtaagg aagatttgca tcctgaagag
     1381 caatccggcg atgacatatt cttgcttgaa agcgtcaaga aacgaggcgg gaagattcga
     1441 tttttgaagt ctgaatcagc ttttgtgaca actaagcaag cgggaacttt aactgatttg
     1501 ataaagcaaa gaaggagatg gtctgctaaa tcgaggcttt atacagattg gcagctgatt
     1561 tttacagcgt tggtggtgtt ttctgtgtgt cttttgttgt tggctttagc cgttttgtcg
     1621 ttttataaaa tgatattttt atatgttctg gtagctctat tcctttttaa atatttgctt
     1681 gactccattt tcctatccac ggtcagcaaa tttttccaat tgaataatat ctggtttttt
     1741 tcattcctgt tgtcaatctt ctatcctttc tacattgttt ctgtagctgt ttcttcgtta
     1801 gttttcagac caaagaaatg gaattgaaca ggaggagagg gatgtaataa attaccttgt
     1861 aatataaagt atatcgcccg aaagattggt tttgtatcgt cttagggttt gttttgccgg
     1921 acctgaagtt ggattgccta ttccatagga aatatcaaaa attgttttac aactgtcaca
     1981 aatagcttgt cctttgtcat tggggtgaac caatattttt tgtttgtgtt catacggaca
     2041 actcatatca aatgcataat aaattgtatt tccggcatca tcaagcataa cgcctgaata
     2101 cactaaaatt ccgccatatc cagtagcagc tctttcagga atattaggag tagttccttt
     2161 tataaatatc aaacttttat ttgaagaatt tctaaatgtt gggtaagtcg ttgtcagatt
     2221 taattcgaga taaactggaa agtccgggat aggcgatata tacgtatcat cacaactcgc
     2281 aaattgcagt gcaagtaaac caatagtgag gtaatacttt atgtaa
//
LOCUS       DATDNM010000251         2227 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_245285, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000251 DATDNM010000000
VERSION     DATDNM010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245285"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..394)
                     /locus_tag="VI413_04300"
     CDS             complement(<1..394)
                     /locus_tag="VI413_04300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913876.1"
                     /translation="MKPIWKYILIAFFSTAVLGYLVFSLWYFSGRDKENVCRRLEIVL
                     VDSTKVQLITEKNIAQILEENELNPIGKTIKYIHTEDIERVLRKNQMIKVAECYKTPS
                     GIVNIRIQQRIPNFRVVGLGSYYLDVVRK"
     gene            complement(451..1827)
                     /gene="murC"
                     /locus_tag="VI413_04305"
     CDS             complement(451..1827)
                     /gene="murC"
                     /locus_tag="VI413_04305"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEY6913877.1"
                     /translation="MNKFTQYYFLGIGGIGMSALARYFYTKGFRVAGYDKTETKLTSD
                     LQSEGIAVCFNEAVDQIPVRYTKPENTLVILTPAVPKDHPQLKYFQENNFTIQKRAQV
                     LGNITRQSKGICIAGTHGKTTTSTITAHLLYQSQVSCNAFLGGIANNYNTNLLLSAES
                     NLVVIEADEYDRSFHQLSPYMAVITSADPDHLDIYETADAFRESFEHFTSLIRPGGAL
                     VMRKGIDIVPQLQKGVKLYTYSMDEGGDFSAENIRTVKGEMHFDFVTPNDRINDVRLG
                     VPVKINVENSVAAMALAWLNGVTSDEIRTGISSFSGIYRRFNVVYKSDKVVFMDDYAH
                     HPSELNASISSIRNLYPDRKITGIFQPHLYSRTRDFAADFAAALSQLDELILLDIYPA
                     RELPIVGVDSDLILRDVKLENKTLCSKENLLPLLIEKDLDVLVTFGAGDIDKMVPLIK
                     EQLKKMSI"
     gene            complement(1841..>2227)
                     /locus_tag="VI413_04310"
     CDS             complement(1841..>2227)
                     /locus_tag="VI413_04310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6913878.1"
                     /translation="AAEPFISPNLIVTDFVSRMDYAYSIADLVVSRAGASSISELCLL
                     AKPVILVPSPNVAEDHQTQNALALVRKDAAVMIKDVDAKEQLVDKALELIENEVELKK
                     LSENILKLAQKDSADRIAEEILKLIK"
BASE COUNT          673 a          495 c          392 g          667 t
ORIGIN      
        1 gtttgcggac gacatcaaga taataacttc ccaaaccaac gacacgaaaa tttggaatcc
       61 gttgttgaat acgaatattc acaattccgg atggagtttt ataacattca gccactttaa
      121 tcatctgatt cttgcgtaga accctttcta tatcttcggt atgaatatat ttgatcgttt
      181 ttccaatcgg gttcaactca ttctcttcca gaatttgtgc tatattcttt tcggtaatca
      241 gttgtacctt agtactatca acaagtacta tttccaatct ccgacacaca ttttctttat
      301 ccctgcctga aaaataccac aacgaaaata ccagatatcc cagcactgct gtgctaaaga
      361 aagcaattaa tatgtatttc cagatcggct tcattcttaa tttccaattt cacaatttcc
      421 aatggtaaga atattggaaa ccggcaatta ttaaattgac atttttttta gttgttcttt
      481 aatcaaaggt accattttgt ctatatcccc ggcaccaaaa gtaaccaaaa catcgaggtc
      541 cttttctatc agcaaaggta atagattttc ctttgagcac aatgtcttgt tttccagttt
      601 aacatcacgc aaaataaggt cagaatcaac acccacaata ggcaattcac gggcaggata
      661 tatgtccagc aaaataagtt catctaattg cgacagtgca gctgcaaaat cagcagcaaa
      721 atcacgagtc ctggaataaa gatgcggttg aaaaataccg gttatctttc tgtcaggata
      781 taaattacgg atagaagaaa tgctggcgtt caattcgctg ggatgatgcg cataatcgtc
      841 cataaaaacc actttatccg acttataaac cacattaaaa cgacgataaa ttcctgaaaa
      901 agaagatatg cccgtacgga tttcatcact tgtaactccg ttcaaccagg ccaatgccat
      961 ggctgcaaca ctgttttcca catttatctt aaccggaact cctaaacgga cgtcattaat
     1021 cctatcgttg ggcgttacaa aatcaaaatg catctcacct ttcactgtac ggatgttctc
     1081 tgcgctgaaa tcaccacctt catccatgga ataggtataa agcttcactc ctttttgtag
     1141 ttgtggcact atatcaatgc ctttgcgcat gacgagcgcg cctcccggac gaataagcga
     1201 cgtaaaatgc tcaaaacttt cacgaaaagc atcagccgtt tcataaatat ccaaatgatc
     1261 gggatcagct gaagttatta ccgccatata gggcgaaagt tgatgaaacg aacggtcata
     1321 ttcatctgcc tctatcacca caaggttact ttcggctgaa agcaataaat tagtattgta
     1381 attattggct atccctccta gaaaggcatt gcacgaaacc tgcgattgat acagtaaatg
     1441 tgcggtgata gttgaagtag tagtctttcc gtgcgttccg gcaatacaga ttcctttact
     1501 ctggcgggta atattcccca acacctgagc acgtttctga attgtaaaat tattttcctg
     1561 aaaatatttt agttgcgggt gatctttggg taccgcaggt gtaagtataa ccaacgtgtt
     1621 ttcgggtttc gtatatctta caggaatctg gtccacagcc tcattaaaac aaacagctat
     1681 tccttccgat tgcaaatcag aagtcagctt ggtttcggtt ttatcgtaac ctgccacccg
     1741 aaaacctttt gtgtaaaaat aacgggccag ggcactcatg ccaattccgc cgatacctaa
     1801 aaaataatat tgtgtaaact tattcatctt ctttcaatta tcacttaatt agtttcaaaa
     1861 tctcctctgc aattctgtca gctgaatctt tttgggccag cttgaggata ttttcactca
     1921 attttttcaa ttcaacctca ttttcaatca attcaagtgc tttatctacc aattgctctt
     1981 ttgcatcaac atctttaatc attactgctg catctttacg aaccaacgcc aatgcgtttt
     2041 gggtttggtg atcttcagca acattaggcg aagggaccag gataaccggt tttgcaagca
     2101 gacacagttc ggaaatagag ctggctccgg cacgggaaac aaccaagtcg gcgattgaat
     2161 aggcataatc catgcgcgaa acaaaatccg taacaatcag gtttggcgaa ataaatggct
     2221 ctgcagc
//
LOCUS       DATDNM010000252         2190 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_778900, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000252 DATDNM010000000
VERSION     DATDNM010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_778900"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..1183)
                     /locus_tag="VI413_04315"
     CDS             complement(29..1183)
                     /locus_tag="VI413_04315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6913879.1"
                     /translation="MWIDREIKAELVDLALHYPVVMITGPRQSGKTSLALQVFPDKPY
                     YSFENPDVREQISSDSRAFFTANPDGAIIDEFQRYPEILSYIQGIVDEKKQNGQFILT
                     GSNNVSMLSKVTQSLAGRVALLKLLPFSIAEIGALGKNYSVDDYLLNGFYPRVYADNL
                     NPTKAYRNYYETYVERDIRQILQVKDVSLFQKFMKLCAGRVGQLFNANNLATEVGVSY
                     QTIFAWLSALQATYIVFLIQPWSANISKRLVKTPKLYFYDVGLAAYLLGIENTSHIET
                     HPLRGSLFENMVTLELLKKRYNSGLDNNLYFYRDNHGNEVDLLQESGYQLNLFEIKSA
                     ETFTPHFLKGLDYFKKIAPDRVGTSNLVYAGSDEMTIKEHHIVNYKHLFL"
     gene            1567..>2190
                     /locus_tag="VI413_04320"
     CDS             1567..>2190
                     /locus_tag="VI413_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009276464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HEY6913880.1"
                     /translation="MIQFFRTPAQHLYAVQTNHPLAADEVRKLEWLFGEAKLLETETV
                     EGNYVGPRREMITPWSTNAVEITQNMGISGIIRIEEYSLVPNTPSVKGGLEYDPMLQR
                     IYTGLNQEIFTVNKQPDPIIEIDDIAAYSAKEGLALSPDEVAYLNGIAEKIGRKLTDS
                     EVFGFSQVNSEHCRHKIFNGQFVIDGEEKELSLFKMIRKTSEENPNKL"
BASE COUNT          729 a          444 c          363 g          654 t
ORIGIN      
        1 cctgtttatt atcaattgtt ttaatcagtt ataaaaacaa atgcttataa tttacaatat
       61 gatgttcttt tatcgtcatt tcatcgcttc cggcatacac caaattggaa gtcccaacac
      121 gatcgggggc aatctttttg aaatagtcca gccctttcag gaaatgagga gtaaacgttt
      181 ctgctgattt tatttcaaat aaattcaatt gataaccaga ctcttgcaac agatcaacct
      241 cgttaccatg attatcccga taaaaataaa gattattgtc taatccggaa ttataacgct
      301 tcttaagcaa ctctagagtt accatgtttt caaataacga accccgcaac ggatgcgttt
      361 caatatgtga ggtgttttca attcccagca aataagcagc caatccaaca tcataaaaat
      421 acaatttggg agtctttacc aatcgtttac tgatattagc tgaccaaggt tggattagaa
      481 aaacaatgta agttgcctgc aaagccgaaa gccatgcaaa aattgtttga taagatacac
      541 caacttcagt tgctaaatta ttcgcattaa aaagttgtcc gacacgaccg gcacataatt
      601 tcataaattt ttgaaataac gaaacatctt ttacctgcaa aatttgacga atatcccttt
      661 caacataggt ttcgtaataa tttcgataag ctttagtcgg attcagatta tctgcataca
      721 cccgtggata aaagccattc aacaaataat catcaaccga atagtttttt cccaaagcac
      781 caatttcggc tattgaaaat gggagcaact tcaacaatgc aacacgaccg gccaaacttt
      841 gtgttacctt gctcaacatc gaaacattat tacttcctgt aagaataaat tggccatttt
      901 gcttcttttc gtctacgatt ccctgaatat aagagagtat ttcggggtaa cgctgaaatt
      961 catcaataat agctccatca ggatttgctg taaaaaaagc gcgactatct gacgaaattt
     1021 gttcccggac atcgggattt tcaaaggaat aataaggctt gtccggaaaa acctgaagag
     1081 caagagaggt ttttccggac tgacgaggtc cggttatcat taccaccgga tagtgcaaag
     1141 ctaaatcaac taattctgct tttatttctc tatcaatcca catcttgtac aattcataag
     1201 tttaatttat atattgtaca aaaataatat ataattttga tacacaacct atttacctac
     1261 aaaataatgg cgacaattct aataaaaaac cattttttgc aaatacttac tcaaaaaatt
     1321 caactattct gtcgatgtaa atcaaacaaa caactccttt tcactgttga tatatacttt
     1381 ttatgtatat aatttccacg gttgttattt tcccattatc aaacttttta ggcaataatg
     1441 tatttcaaaa accgcttaaa aagactatct ttgcgtttga attgcagatc ttacttcctg
     1501 ccgcataaaa ggcaacatat ctgcacttta catatatcct gaaacatcat tacttcaaaa
     1561 taaattatga ttcaattttt ccgaactccc gcccagcatc tttatgcagt gcaaacaaat
     1621 catccgcttg cggctgatga agtccgaaag ttagaatggc tttttggtga agctaagttg
     1681 ctcgaaactg aaactgtcga aggaaattac gtcggcccgc gccgcgaaat gattactccc
     1741 tggagtacga atgccgttga aatcactcaa aatatgggta tcagcggcat tattcgtatt
     1801 gaagagtaca gcctggttcc taacacaccg tcggtaaaag gcggcctgga atatgaccca
     1861 atgcttcagc gcatttatac cggtttgaat caggaaattt tcacggtaaa caaacagcca
     1921 gatccaatta ttgaaattga tgacatagcc gcctatagcg ccaaggaagg tttggcactg
     1981 agtccggacg aagttgctta tttgaatggt attgctgaga aaattggacg taaactgacc
     2041 gacagcgaag ttttcggatt ctcacaagta aactctgaac actgtcgtca caaaattttc
     2101 aacggacaat ttgttatcga tggcgaagaa aaagaactgt ccttgttcaa aatgattcgt
     2161 aaaacatcgg aagaaaaccc taacaaactg
//
LOCUS       DATDNM010000253         2010 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_672017, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000253 DATDNM010000000
VERSION     DATDNM010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_672017"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VI413_04325"
     CDS             <1..324
                     /locus_tag="VI413_04325"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913881.1"
                     /translation="ASSGMKGRIIVLPISSLTETKAISDIQVYPNPVVDLLNVRFDLS
                     ESAAFEIKLFDLQGKLVKVLLSKTQVNGPFLQSFNLTDKTAQGVYLVKMTLGERSIFR
                     KVIVL"
     gene            478..858
                     /locus_tag="VI413_04330"
     CDS             478..858
                     /locus_tag="VI413_04330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913882.1"
                     /translation="MKNIGYFFVLVLIIIGFSKCYYHNEETLYADLTNSCDTTNITFK
                     AKVVPILREHCYKCHSNAVAADNGAGVKLENYDDVKFHLDHLYGAITHQNKYPPMPKD
                     MTEKIDTCQIKIIRIWKEAGGLDN"
     gene            932..1822
                     /locus_tag="VI413_04335"
     CDS             932..1822
                     /locus_tag="VI413_04335"
                     /inference="COORDINATES: protein motif:HMM:NF040196.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5777 family beta-barrel protein"
                     /protein_id="HEY6913883.1"
                     /translation="MDFYNKQGLLFLLSFIAPFIQAQEVNILNMLDSIAPQKVQYAYG
                     TFKSTRVLNGHSNERMPQGQLDVRIEHRFGLINQGYSEFFGLDQSNTLLSMEYGIKNW
                     VMVGLNRTSQSKTVSGFAKFSIFRQSTGQVVMPVSVSVLLETSIVGNKWMHPERDNLF
                     SSRVSYISQLIVARKFNENLSLQLAPVWIHRNLVPAIIDSNDMFALGIASRYKISRRT
                     SFNVEYYPVLSPSWNHATNYRNSLSVGFDIETGGHVFQLLLSNSMGMIEKAFVTETTG
                     KWLNGDLHLGFNISRVFSLK"
BASE COUNT          594 a          354 c          419 g          643 t
ORIGIN      
        1 gcttcatctg gcatgaaagg cagaattatt gtgttgccta tttctagtct gacagagact
       61 aaggctataa gcgatattca ggtttacccc aatccggttg ttgatctgtt gaatgtccgg
      121 tttgatttgt ccgaatcagc agcctttgaa atcaagctat ttgatctgca aggaaaactt
      181 gtaaaagttt tgttgtccaa aacgcaggta aacggaccat ttttgcagtc gtttaatctt
      241 acagataaaa ctgcacaagg tgtttatctt gtaaaaatga cgcttggtga aagaagcatt
      301 ttcaggaaag ttattgtttt gtaatttcca ggagttaaac ggaatggatc gtatccacga
      361 tgttaaaaaa acaattattt gcacatgaaa cgagcatgaa cgcagaggtt cacctaagac
      421 aatcataatt ttgtcatgcg agttccatac gaccttaaga atcaattata ttatcgtatg
      481 aaaaatatag gctatttttt cgtgttggta ttgattatca ttggtttcag caaatgctat
      541 tatcacaatg aagaaacgtt gtatgctgat ttgacaaact cttgcgatac caccaacatc
      601 actttcaagg ctaaagttgt tcccattctg agagaacatt gctataaatg ccatagtaat
      661 gcggtggctg ctgataatgg ggcaggagtt aagttggaaa actacgatga tgtgaaattt
      721 cacttggacc atctgtatgg ggcgataacg catcagaata aatatccacc tatgccaaaa
      781 gatatgacgg agaaaattga cacttgccag attaaaatta ttcgtatctg gaaggaagcc
      841 ggtggattgg ataattagcc acagtttttt tggaatgaac aaatcattga tgaattattc
      901 gttgttttta cttaattaaa tacatttgta tatggacttt tacaataaac aaggtttgtt
      961 atttttgttg agttttattg ctccttttat tcaggcccag gaagttaata tactcaatat
     1021 gctcgacagc attgctccac aaaaagtcca atatgcttac ggtactttta aatccacccg
     1081 tgtacttaat ggacattcga acgaacgaat gccccaaggg cagctggatg tgcggataga
     1141 acatcgtttt ggtctgataa atcagggtta ttctgagttt ttcggactgg atcaatctaa
     1201 cactttactc tctatggaat acggaattaa aaattgggtg atggtgggac ttaaccggac
     1261 ttcgcagtct aaaactgtat ctggatttgc caaattcagt atattcaggc aaagtacagg
     1321 ccaggtagtg atgccggttt cggtttcggt tttgctggaa acaagtattg ttggcaataa
     1381 atggatgcat ccggagcggg ataatttatt ctcatctcgg gttagctata ttagccagct
     1441 aattgttgcg cgtaagttta acgaaaatct ttcgttacaa ctggcaccgg tttggattca
     1501 ccggaacttg gttcccgcaa ttattgatag taatgacatg tttgctttag gcattgcttc
     1561 gcggtacaag atttcccggc gtacatcatt caatgttgag tactacccgg ttctaagccc
     1621 ttcgtggaat catgccacca attaccgcaa ttcgctttcg gttggtttcg atattgaaac
     1681 tggcggccat gtgtttcagt tgttattgtc aaactctatg ggcatgatag aaaaagcatt
     1741 tgttactgaa accacaggga aatggttgaa tggggatttg catctcggat ttaatatctc
     1801 acgtgtattt tcattaaaat aactataacc ttataatttt aagcatatga agacaaaaat
     1861 aattgttctg ttattcctta ttggaatgaa tactgcagct tttgcgcagg aaaaactaat
     1921 tacgaaaacc ggccatgttt ggttttattc ccatgctccg ctcgaagata ttgaagctca
     1981 ttcgcatcag gcagcagcca ttattatgac
//
LOCUS       DATDNM010000254         3241 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1633176, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000254 DATDNM010000000
VERSION     DATDNM010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3241
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1633176"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(27..746)
                     /locus_tag="VI413_04340"
     CDS             complement(27..746)
                     /locus_tag="VI413_04340"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6913884.1"
                     /translation="MNTKLKCLLLDDELPGLTYLKMLCEQIPELELVKAFNRPDTFLA
                     ESAGLDFELCILDIEMPLINGIQLAELLKGKLIIFTTAHKEYAAEAFDLDAVDFVRKP
                     IQLERLQKAVRKAIKQVNDAKHSKRFIHLNTDKGKSLIVFDQLCYIKSSGIDSRDKDV
                     LLKDGSKICLKNISFEKLQTILPQKNFCRINKQEIIAIDIVQHFSFDQITSTIPGEQN
                     KPLMFYLSEVYRNAFLEKVKI"
     gene            complement(712..1455)
                     /locus_tag="VI413_04345"
     CDS             complement(712..1455)
                     /locus_tag="VI413_04345"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEY6913885.1"
                     /translation="MLLLIAILILIAAIGLTVYFYLKFRESVKQQKEMEIRFQELKSQ
                     VHPLQLETLEAKLNPHLFKNILNSIQSHAYQTYFAIDKLANVLDYILYESRKEFVSPK
                     EEIEFALNLIEINKIKVSPLFDLKVKTKVNNSESLYEQKLLAPLISIDLIENAFKHAD
                     IQSPDAFISITLEFKDNHFGLIVANKISSKPPMKKEKGGIGIKTLEKRLRIIYEDNFK
                     LDSYIEDNVFVAHLNIDLFEYKVKVLAAR"
     gene            1731..2168
                     /locus_tag="VI413_04350"
     CDS             1731..2168
                     /locus_tag="VI413_04350"
                     /inference="COORDINATES: protein motif:HMM:NF025005.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KTSC domain-containing protein"
                     /protein_id="HEY6913886.1"
                     /translation="MKRINEYKKLFNVEPGTDLKTLKTTYRNLVKEWHPDKFATDDEL
                     ALEAELKSRQIIDGYHFLVSIAPETIAANEEEHIASAESGIADFKLKGQLLEVSFMDG
                     STYEYFGVSKNIYVRLINADKQLRFAKRNIFNSYLYRKAKKAA"
     gene            complement(2241..>3241)
                     /locus_tag="VI413_04355"
     CDS             complement(2241..>3241)
                     /locus_tag="VI413_04355"
                     /inference="COORDINATES: protein motif:HMM:NF038128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF6359 domain-containing protein"
                     /protein_id="HEY6913887.1"
                     /translation="AGQKVRIAFKYVSTSTKAGTWELKNFVVKTGEAVVNDYGNGTKE
                     SPYTVTGATQNQTGTSAWVKGCIVGYAWFANSMNQFYFTGDTCTQATNILIADSMSNI
                     YLSKCIAVQLPVGVVRNGLNLKDMKANYGKQVTLYGGLMSYFGMAGLKNTSYYMLKDT
                     TGGTMPIEAIYSETFANSSKGGFTIQDVNLPAGLSYVWTPTATYGMTASGFKSPTDYA
                     SESWLISPAINLSKLTTATLMFDQALNYVSTMANKQTYISVWVSTDYQSGLPNTATWT
                     QATIPTYPAGTNWTFISSGAVDLSSVAGKSGVRIAFKYVSIAGDAATWEVKNVVVY"
BASE COUNT         1004 a          659 c          588 g          990 t
ORIGIN      
        1 ataagactga aaaaaaatgt aatgaatcag attttcacct tttccaaaaa ggcattccga
       61 tacacttcgc tcaaataaaa catcaggggt ttattttgtt caccgggaat ggtggaggtg
      121 atttggtcga aagagaaatg ctggacaatg tcaatggcga ttatttcctg cttattaatc
      181 cggcaaaagt ttttttgagg aaggatggtt tgcaattttt cgaaagagat attcttcagg
      241 caaattttcg agccgtcttt aagcaacaca tctttatccc ggctatcaat tccggaagat
      301 tttatgtaac acaactggtc aaacacaatc agcgattttc ctttgtctgt gttcaagtga
      361 ataaatctct tactgtgttt agcatcattc acctgcttaa tggcttttcg taccgctttt
      421 tgaagtcttt ccaactggat aggcttgcgt acaaaatcca cggcatccaa atcgaatgct
      481 tcggctgcat attctttgtg agcagtggta aagataatga gcttgccctt gagcaactct
      541 gccagttgaa taccgtttat cagcggcatt tcaatatcaa gaatgcaaag ttcgaaatcg
      601 agcccggccg actcggccaa aaacgtatcg ggtcggttga aagcttttac caattccaac
      661 tccggaattt gttcgcagag cattttcagg tacgtcagcc ctggcagttc atcatcgagc
      721 agcaagcact ttaactttgt attcaaagag gtcgatattt aaatgtgcaa caaatacatt
      781 atcttcaata tagctatcga gcttaaaatt atcttcataa ataatccgca accgtttctc
      841 cagcgttttt atgccaatcc cgcctttctc ttttttcatg ggcggtttcg acgaaatttt
      901 attggccaca atcagcccga aatgattgtc cttaaattct agcgtaatgg aaataaaagc
      961 atcgggactc tgtatatcgg catgcttgaa ggcattttca atcaaatcga tagaaattaa
     1021 aggcgctaaa agtttctgtt cgtacagcga ttccgaatta ttcactttgg tttttacttt
     1081 cagatcgaag agcgggctca ctttgatttt attaatctca atcaggttca gggcgaattc
     1141 tatttcctct ttggggctaa caaattcttt gcggctttcg tacaaaatat agtccagcac
     1201 gttggccagt ttgtcaatgg caaaataggt ctggtaggca tgcgactgga tggagtttaa
     1261 gatattctta aacagatgcg ggtttaattt agcttccagc gtttccagtt gcaacggatg
     1321 aacctgactt ttcaactcct gaaaccggat ttccatctcc ttttgctgct tcaccgactc
     1381 acgaaacttc aaatagaaat acacagtcag tccaatagct gcaatcaaaa tgagtatagc
     1441 aataagtagt aacattggta caagattcat tcatttattt ttttcaaaat tagtcatttt
     1501 aatacaatgc acaaaattca ttctattgag gttttgatct atataaatca aatttagcaa
     1561 ttaagaataa caagaaatag tcaatatagc atcaaataaa taatttcaca caggtatttt
     1621 agtcataaac actaaataat tcgttttcaa agctgtaaaa cattaccttt gcgcccgatt
     1681 aaaaaagctg cgaagcaaat acaattaaaa cattacagaa acacatattt atgaagcgta
     1741 ttaacgaata caagaaatta tttaacgttg aacccggcac tgaccttaaa acactaaaaa
     1801 ctacttaccg taacttggta aaagaatggc atcctgataa atttgcgacg gatgatgagc
     1861 ttgcacttga agcagaactc aaaagccgac aaataatcga tggttatcat tttctggtaa
     1921 gtatagcccc cgaaacaata gctgccaatg aagaagaaca tatagcctct gcagaatcgg
     1981 gtatagctga cttcaaactc aaaggacaat tgctggaggt ttcatttatg gatggatcga
     2041 catacgagta tttcggtgtt tcaaaaaaca tttatgtccg gctgattaat gccgataaac
     2101 aattacggtt tgccaaacgc aacattttca attcttattt gtaccgtaag gctaagaaag
     2161 cagcttaaat catttacact aaaaaaacac ccgctataga aattctataa cgggtgtttc
     2221 tgtttgtatt attattttcg tcagtaaaca actacgtttt tcacttccca ggttgcagca
     2281 tcaccggcaa tactcacata cttaaatgca atgcgaacgc ctgattttcc agccacgctg
     2341 cttaagtcaa ctgcacccga cgatataaat gtccagtttg tacctgcagg atatgtaggt
     2401 atagttgcct gggtccatgt cgcagtgtta ggtaatccac tctgataatc agttgacacc
     2461 cacacagaaa tatatgtctg cttatttgcc atggtagata cataatttaa tgcctggtca
     2521 aacattaggg tagctgttgt aagcttagac aaattgatag cgggggaaat caaccaactt
     2581 tcagaagcat aatctgtagg gctcttgaag ccgcttgcag tcataccata tgttgctgtc
     2641 ggagtccaga catagctcaa cccagcaggc aaattcacat cctgtatagt gaaacctcct
     2701 ttactcgaat tggcaaatgt ttcagagtag atagcttcga ttggcattgt tccaccggta
     2761 gtatccttaa gcatatagta agacgtattt ttaagacctg ccattccaaa atacgacatc
     2821 aagcctccat ataaagttac ctgttttcca taattagctt tcatatcttt taaattcaaa
     2881 ccattacgga caaccccgac aggtaattga acagcaatac atttggatag ataaatgtta
     2941 gacattgaat ctgcaattaa aatatttgtt gcctgagtac aggtatctcc ggtaaaataa
     3001 aactgattca ttgagttcgc aaaccaggca tagccaacaa tacagccttt tacccatgcg
     3061 cttgtgcccg tttgattttg ggtagcaccg gtaacggtat atggagattc ctttgttcca
     3121 tttccataat cattgacaac agcctcacca gttttgacta caaagttctt aagttcccac
     3181 gttcctgctt ttgttgaagt agaaacatat ttaaaagcaa ttcttacttt ctgacctgcg
     3241 t
//
LOCUS       DATDNM010000255         2753 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_779204, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000255 DATDNM010000000
VERSION     DATDNM010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_779204"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..1316)
                     /gene="lpxB"
                     /locus_tag="VI413_04360"
     CDS             complement(189..1316)
                     /gene="lpxB"
                     /locus_tag="VI413_04360"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEY6913888.1"
                     /translation="MKYFIIAGEASGDLHASNLMRELKKEDSNAEFCFLGGDLMQVQG
                     GQMVKHYRQMAFMGIVAVLKNARTVLKNLSDCKKAIVDFQPDVLILVDYPSFNLRIAS
                     YVKQNLNTKVYYYISPKIWAWKEYRIREIKRNVDKMFTIFPFETAFYAKHKFPVEYVG
                     NPTVDSVCTRPNQEQTFRQFCVENNLTEKPIIAILAGSRKQEIVGCLPRMIEAGLHFA
                     NDYQVVIAGAPSIEAGLYNSILKERNVSVVYGKTYELLQQAKVAVVNSGTATLETALV
                     GTPEVVVYHVPLGRFGYLVKEIVVRTKFVSLVNIVAEKLVVKELLAHLFTVENIVAEL
                     ELILKNETYRKNMLNAYAQMRKLLGEPGAAERAAKKIVGSF"
     gene            complement(1388..1672)
                     /locus_tag="VI413_04365"
     CDS             complement(1388..1672)
                     /locus_tag="VI413_04365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913889.1"
                     /translation="MKRFDHFLYGFIPGIILPVVFMWVYLDRFYPGDFTFWEIIKQIY
                     PSVLLGKLLLLSVMPNLAFVFVFYKSDSFKIATGVLLSAMPYFIGSILLL"
     gene            complement(1699..2457)
                     /gene="surE"
                     /locus_tag="VI413_04370"
     CDS             complement(1699..2457)
                     /gene="surE"
                     /locus_tag="VI413_04370"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019539379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEY6913890.1"
                     /translation="MTRPYILITNDDGADAKGIEVLTKLMMQIGDVVVVAPDGARSAQ
                     SNALTVIHPIRFKKIEEREGLLRYSCTGTPTDCVKLALNEIVERQPDLLVSGINHGSN
                     SAINVIYSGTMGAVLEGCENGILSIGFSICDHSLDADFSYFEEYVLQITREALKNGLP
                     HATCLNVNAPAGKIAGVKVARQCDGRWTKEFAKRTDPHGRAYYWLTGHFENHEPESND
                     TDEWALNNGYISIVPTKIDLTAHEAIDVVRQWKL"
     gene            complement(2469..>2753)
                     /locus_tag="VI413_04375"
     CDS             complement(2469..>2753)
                     /locus_tag="VI413_04375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated ABC transporter
                     permease subunit GldF"
                     /protein_id="HEY6913891.1"
                     /translation="AVYVAIGVFSSSLSNNQIISFVVAVLLSFFFYYGFEVLTGFFTS
                     GQSIQLLEFFGIHAHYKSMSRGVIDSRDLIYYLVVSVGFLSATVWKIKRQ"
BASE COUNT          886 a          587 c          458 g          822 t
ORIGIN      
        1 ctctaattat ataaaatatt ttttcaacaa gaattgtctt ttttgatatt gttgataata
       61 ctacttttga atacttctgg tacccctaac caattaatcc agatttcata cttcaaaaag
      121 atttgaaaaa tatatagtaa atgatggtgc gtgctggctt caccgaggaa agtaaattct
      181 gactgaaatc agaaactacc gactattttt tttgcggctc tttcagcagc tccgggttca
      241 cccaacaatt ttctcatttg agcgtatgca ttgagcatat ttttgcgata ggtttcgttt
      301 ttcagaataa gctcgagttc ggcaactata ttttcaacag taaataaatg tgctaacaat
      361 tccttaacga ccaacttttc ggcaacaata tttaccagcg aaacaaattt agtgcggacg
      421 actatttctt ttactaaata accgaagcgt ccaagcggga catgataaac aactacttcg
      481 ggagttccca caagtgcagt ttcaagggtt gctgtcccgg aattcaccac tgccactttg
      541 gcttgttgaa gtaattcata ggtttttcca tacacaacag acacatttcg ttctttcaga
      601 attgaattgt acaatccagc ttctattgag ggtgctccag caattaccac ttggtaatca
      661 ttcgcaaaat gcaaacccgc ctcaatcatg cgcggcaaac aaccaacaat ctcttgttta
      721 cgacttcctg cgagtatggc aataattggt ttttcagtca aattattttc aacacaaaat
      781 tgcctgaaag tttgctcctg attcggacgt gtgcaaacag aatcgacagt cgggttaccc
      841 acatattcaa ccgggaattt atgcttggca taaaatgctg tttcaaacgg aaaaattgtg
      901 aacatcttat ccacgttacg cttaatttcc ctaatacggt attctttcca ggcccagatt
      961 ttcggagaga tataataata aacttttgtg ttcaggttct gcttcacata actggcaatg
     1021 cgtaaattaa agcttggata atcaaccaga atcaacacat caggctgaaa atcaacaatg
     1081 gctttcttac aatcgcttaa gtttttcaat acagttctgg cattcttaag tactgcaact
     1141 attcccataa aagccatttg gcggtaatgt tttaccatct gtccaccctg gacctgcatc
     1201 aaatcacctc ccaaaaagca aaattcggca tttgagtctt cttttttaag ctcacgcatc
     1261 aaatttgaag catgtaaatc acctgatgcc tcaccggcta ttataaaata tttcactggg
     1321 attccaaaga ttagttgatt aagtaatgaa ttgactaata acttactact tgccgcttat
     1381 tgctaattta cagcagcaga atacttccta taaaataagg catggcagat aaaagaacac
     1441 ctgttgcaat tttaaagcta tccgatttat aaaacacaaa aacaaatgcc agattaggca
     1501 ttacagaaag tagcagtagt tttccaagta aaacacttgg ataaatttgt tttatgatct
     1561 cccaaaaagt gaaatcgccc ggataaaaac ggtcaagata cacccacatg aagacaaccg
     1621 gaagaatgat tccgggtata aatccatata aaaaatgatc gaaacgtttc actgataaat
     1681 taccttaact gtttataatc aaagcttcca ttgacgaact acgtcaatag cttcgtgtgc
     1741 tgtcaaatcg atcttagtcg gaacaattga aatataacca ttattcaatg cccattcatc
     1801 tgtatcattc gattccggct catgattttc gaaatgtccg gttaaccaat aataagctct
     1861 gccatgtgga tcagtgcgct tagcaaattc ctttgtccaa cggccatcac actggcgggc
     1921 tactttgact ccggctattt taccagctgg agcatttaca ttcaggcaag tagcgtgcgg
     1981 caatccgttt ttcaaggctt cccttgtaat ttgcaataca tattcttcaa aatagctaaa
     2041 atcagcatca agcgaatgat cacaaattga aaatccgata gatagaatgc cattttcaca
     2101 accttcgagt acagcaccca ttgttcctga gtaaattacg tttattgctg aatttgaacc
     2161 atgattaatc cctgagacca acaaatcagg ctgacgctct acaatttcat tcaatgctag
     2221 ttttacgcaa tctgttggcg tgccggtaca gctataacgt aaaagacctt cacgttcttc
     2281 tattttttta aaacgaattg gatgaattac agttaaagca ttcgactgtg cagaacgtgc
     2341 accatcagga gccactacca ccacatcgcc aatttgcatc attaatttgg tcaacacttc
     2401 gatgcctttt gcatctgcac catcgtcgtt agttattaat atatacggtc ttgtcatatt
     2461 agctaatttt attgtcgttt aattttccag actgtagcac ttaaaaatcc aacgctcacg
     2521 accaaataat agatcaaatc gcgcgaatca ataacacccc gactcataga tttataatgg
     2581 gcatgaattc cgaaaaattc taatagctgg attgattgac cggatgtaaa aaagccggtc
     2641 aatacctcga agccatagta aaagaagaag gaaagtaata ctgccacaac aaacgaaata
     2701 atttgattgt ttgacagcga ggaagaaaac acaccaattg caacgtaaac agc
//
LOCUS       DATDNM010000256         2989 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_31681, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000256 DATDNM010000000
VERSION     DATDNM010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2989
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31681"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1697)
                     /locus_tag="VI413_04380"
     CDS             complement(<1..1697)
                     /locus_tag="VI413_04380"
                     /inference="COORDINATES: protein motif:HMM:NF019556.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-L-arabinofuranosidase domain-containing
                     protein"
                     /protein_id="HEY6913892.1"
                     /translation="MKNKIKYIGLFLFVCQTVFGQSFLGKAKQPIAFLNKDVVLSESW
                     IKQRETVNAKYIHQFDPDRLLHNFRINAGIESKAKPLEGWESPNVGLRGHFVGHYLSA
                     CASLIEKTGDTLLQKRVKYMVDVLDDCQQKLGGKYLSAFPENDFTILETKFGGVWAPY
                     YTYHKIMQGMLDVYKATGNKKAYAIVVNMAAYVKERMDKLSPETIEKMLYTPQANPAN
                     EVGGMNDVLQNLFAISKDSTHYRLACLFDRKWFSQPLYEGKDILSGLHSNTHLPLIIG
                     FAKRYENTGDSYYRDVVSHFWDMLEHHHCYVNGSSSGPRPIATTPTAQTSEHWGKPDC
                     LSTTLTDKTSESCVSHNTQKITSTLFRWTAQPEYADVYMNTLYNSVFALQNAETGCNV
                     YSLPLGSPNKKNFANPSEFFCCNGTTIEAFTNLNANIYFYNNDNLWVNLYIPSSVNWK
                     SKGITLSQSSDFPDSSVVKFNVTAKKNTPFALKLFIPSWADKQTQVLVNGEPITTNVT
                     PMSYFIIDRKWKSGDKIEIRFNYHFDLKKIPDNPNVVALFYGPILLAFQVNEETILKG
                     "
     gene            complement(1763..>2989)
                     /locus_tag="VI413_04385"
     CDS             complement(1763..>2989)
                     /locus_tag="VI413_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004560 - alpha-L-fucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEY6913893.1"
                     /translation="NHHDNLDLWNSKYQEWNSVRVGPQKDIVAGWAAAAKKQGLPFGL
                     SVHAAHTWTWFETSQRSDTTGALAGVPYDAKLTKADGKGTWWEGLDPQELYEQRHPLS
                     KGSEKGITALWGQWDWGNGASVPDQKYCDKFYNRTMDLINLYHPDLLYFDDSKLPLYP
                     VSDAGLKIAAHYYNTNMAQHKGKLEAVMFGKQLTEDQKKCMVWDVERGAPDKPQENAW
                     QTCTCIGDWHYNKGIYENGSYKSAATVIRMLIDIVSKNGNLLLNIPVRGDGTIDDKEV
                     AVLEGIAAWMDVNKESIFDTRPWRIFGEGSSVDAVNKLDGAGFNEGKLAYTAKDIRYA
                     QKGNVLYATVMGVPTEDISLKSIVKNIGTKKIKKIELLGSKEKISWKQEADSLVIIKP
                     KFIPNNIAVVLKIAMK"
BASE COUNT          868 a          655 c          519 g          947 t
ORIGIN      
        1 ccttttaata ttgtttcttc attaacttga aatgctaata aaatcggccc ataaaacagt
       61 gcaactacat ttggattatc aggtattttt tttaaatcaa aatgataatt aaaacgtatt
      121 tctatcttat ccccgctttt ccactttctg tcaattataa aataagacat cggagttaca
      181 ttagttgtaa ttggttctcc gtttaccaaa acctgagttt gtttgtcagc ccaagatggg
      241 ataaataatt tcaatgcaaa tggtgtattt tttttggctg ttacgttgaa tttcacaacg
      301 gaactatccg gaaaatctga cgactgcgac aaagtaattc ctttcgattt ccaattcaca
      361 gaggaaggaa tgtacagatt cacccagaga ttatcgttgt tgtaaaaata gatattggca
      421 ttcaagttcg taaacgcttc aatagttgtt ccgttacaac aaaaaaactc actggggttg
      481 gcaaagttct tcttattcgg agaacccaat ggcaaagaat aaacattaca tccggtttcg
      541 gcattttgta gtgcaaaaac ggaattataa agcgtattca tatatacatc agcatattcg
      601 ggttgggcag tccaacgaaa caaagtactt gtgatttttt gagtgttatg tgaaacgcat
      661 gattcagatg ttttgtcagt aagagttgta cttaagcaat ccggttttcc ccaatgttct
      721 gaagtttgag cagttggagt tgtagcaata ggccttggac cactactaga accattcaca
      781 taacaatgat gatgttccag catatcccaa aaatgggaaa caacatcacg ataatagctg
      841 tctccggtat tttcataccg tttggcaaac ccaattatca aaggtaaatg ggtgttggaa
      901 tgcaaacctg acaatatatc tttcccctca tacaatggct ggctgaacca tttacggtca
      961 aaaagacaag ccaaccggta atgagttgaa tctttggaaa ttgcaaataa attctgtaat
     1021 acatcattca tcccacccac ttcatttgcg ggatttgcct gaggagtata tagcattttt
     1081 tcaatagttt ctggcgaaag tttatccata cgctctttaa cgtaagcagc catatttacg
     1141 actattgcat acgctttttt atttccggta gccttataaa catcaagcat tccctgcatg
     1201 attttatgat aagtatagta cggagcccaa acgccaccaa atttagtctc cagtatagta
     1261 aaatcatttt cgggaaaagc gctcaggtat ttgcccccca atttttgctg gcaatcgtca
     1321 agcacgtcaa ccatgtattt tacacgtttt tgaagcaaag tatcgcccgt tttttcaatc
     1381 aacgaagcac aagctgacaa ataatgaccc acaaaatgcc cgcgcaatcc cacattaggc
     1441 gactcccaac cttcaagcgg tttcgctttc gattcaattc cggcatttat cctaaaattg
     1501 tgaagcaacc tatctgggtc aaattggtga atatactttg cattgacagt ctctcgctgc
     1561 tttatccatg actcagacaa cacaacatct ttatttaaaa atgcaatggg ctgcttcgcc
     1621 ttgccaagga atgattgtcc aaaaaccgtc tgacaaacaa acaaaaacaa cccaatatat
     1681 tttattttat ttttcatatt gaaaattgaa tattaaaaat attgtattaa tattaaaact
     1741 atcactctaa atttagaaac aattacttca tagctatttt taaaacaacc gcaatattat
     1801 tcggaataaa ttttggtttt atgattacca atgaatctgc ttcttgtttc caagaaattt
     1861 tttctttgct gccaagcagt tcaatttttt tgattttttt cgttccaata ttttttacaa
     1921 tcgatttgag tgaaatgtct tcggttggaa cacccattac ggtagcataa agcacatttc
     1981 ccttttgggc atatcgaata tcctttgcag tataagccag ttttccttca ttgaaaccgg
     2041 caccatccaa cttattcaca gcatccaccg aagagccttc gccgaagatt ctccatggac
     2101 gcgtatcgaa gatactctct ttgtttacat ccatccatgc agcaatacct tcaagtacag
     2161 ccacttcctt atcatcgatt gtaccatcgc cacgcacagg gatattgagc aacagatttc
     2221 cgtttttgct cacaatgtca atcaacatgc ggataaccgt agctgccgat ttgtagctgc
     2281 cgttttcata aatacctttg ttgtaatgcc aatcgccaat acaggtacag gtttgccatg
     2341 cattttcttg tggtttgtct ggcgcaccac gttcaacgtc ccaaaccata catttctttt
     2401 gatcttcggt caactgctta ccaaacataa ctgcttcgag cttgcctttg tgctgagcca
     2461 tgttggtatt ataataatgc gcagcaattt tcaaacctgc atcgctgacc gggtaaagtg
     2521 gcaattttga atcatcaaaa taaagcaaat cgggatgata caggttgatc aaatccattg
     2581 tgcggttata aaacttatcg caatactttt ggtcaggaac acttgcgccg tttccccaat
     2641 cccactgccc ccacaaggcg gtaattcctt tttcacttcc tttactaagt ggatgtctct
     2701 gctcatatag ttcttgagga tcgagccctt cccaccaggt acctttgcca tcagcttttg
     2761 tcaatttagc atcgtaaggc actccggcta aagcaccggt tgtatctgag cgttgcgatg
     2821 tttcgaacca tgtccaggta tgggccgcat gaacactcaa tccaaatgga agtccttgtt
     2881 ttttggcagc tgctgcccaa ccggccacaa tatccttttg cggacctaca cgtaccgagt
     2941 tccattcctg atatttgctg ttccacaaat ccaggttgtc gtggtggtt
//
LOCUS       DATDNM010000257         3449 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1847171, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000257 DATDNM010000000
VERSION     DATDNM010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1847171"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1115)
                     /locus_tag="VI413_04390"
     CDS             complement(<1..1115)
                     /locus_tag="VI413_04390"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY6913894.1"
                     /translation="MNIVETSIKKPLIVAVIFTLLTLGGLISFNALNLNLMPKFELPI
                     LTVQTIYPGAGASEVETTVTKKIEDALSTVENLKKISSTSMEGVSVIVIELNAGTDAN
                     LAVQEAQRKISAIKSNLPTDVKEPAITKMALDERAILSVAASSTLPSTQFYKLVEDRI
                     QSRLAKLPGVGSVKISGGKERQIKVNIDAEKLKAYKLSVLQVLQSIQSSNMEIPAGNV
                     ENSASVYSVRLAAKYASLDELRNTVITTTPNGGKVKVLDVAEVEDGVAEQKLINRIDG
                     RDAIGLSIQKQSDANAVKVSDLAKKELQAIEKEYATDHVKFEIATDDSIFTRASADGV
                     VEDLVLAILIVAMVCFIFLHNIRSAMIVMVAVPLSIIP"
     gene            complement(1332..2390)
                     /locus_tag="VI413_04395"
     CDS             complement(1332..2390)
                     /locus_tag="VI413_04395"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY6913895.1"
                     /translation="MKKQTIIAGAAVITMLGVMTWTLASNKKVIDSRKEVKTGQSDVA
                     VTVAPTEMKETNGNLELVGTAQPCKEVNVASESAGKIIQVNFKMGDFVAKGKVLAKID
                     DTYKRLAYDNAKLNYDKYKDDLNRYQALRKGDAISDTQLRDIKLGYENAAIQLENAKK
                     QWDDTKITAPFSGYITAQNTELGAYVNVGAAIAGIADISELKVVLDVSESNAYELRQG
                     QQINVTTDVHPEARYTGKISNISPKASASHTYPVEVLIANNGKDKLKAGTYVNVSVNM
                     GKSGKTLMIPRDAIVSSVKDPSVYVVNGNLAKLVKITTGRSFNSNLEVVAGLSEGDKV
                     VTTGQINLTDGSKVSVIN"
     gene            complement(2431..>3449)
                     /locus_tag="VI413_04400"
     CDS             complement(2431..>3449)
                     /locus_tag="VI413_04400"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY6913896.1"
                     /translation="SISQVIYNQTALTALKLAKQADNINELGIQKSKEEVGIQVAKMY
                     ALALTTIEQQKLIESNIERGERLKKITQVTVDNGIGKQIDLDRVNVNLENTYTQLSNT
                     KAAQEQQLNTIKYLLDIALDTPIELTDTIGTELLNDKPVLMNDFSSNVNIRMLESQKQ
                     LYSLNKKLINAGYVPSLSVSGQAAYQGLQNDFKTYFSSGSDNKWFPYANFTVTLSVPV
                     FDGFEKRSKARQADLDTRRTELTMDNTKEALSLDYRNALNTYNNNRINVTRQKQNLQL
                     AEKVYKETSLKYNEGMATMSSLLQDETGLNNAQAGYLTALYNFKDSELKIISLNGEIK
                     NLIN"
BASE COUNT          870 a          751 c          684 g         1144 t
ORIGIN      
        1 ggaataatgg aaagcggaac ggccaccatt acaatcatcg cgcttcggat attgtgcaga
       61 aagatgaaac aaaccatagc cacaatgagg atagccagta caaggtcttc cactactcca
      121 tcggccgaag cacgggtaaa aatggaatca tcggtagcaa tttcaaattt aacgtggtcg
      181 gttgcatatt ctttttcaat agcctgcaac tcttttttag ccaaatcgga aacttttaca
      241 gcattggcat cgctctgttt ttgaatagac aacccaatgg catcgcggcc atcgatacgg
      301 ttaatcagct tttgttcggc tacaccgtct tctacttcag ccacatccaa tacttttact
      361 ttaccaccat tgggagtggt tgtaattacc gtgttacgaa gttcatcaag gcttgcatat
      421 tttgctgcca gacgaacaga ataaaccgat gcggagtttt ccacattacc tgcaggaatt
      481 tccatattgg aactctgtat tgactgtaaa acctgtaata cagaaagctt gtaagccttg
      541 agtttttcgg catcaatgtt taccttgatc tggcgttctt ttcccccgct tattttcaca
      601 gaaccaactc ccggcagttt agccaaacgg gattgtatac ggtcttccac cagtttataa
      661 aattgtgtgg aaggtaatgt tgaagaggca gccacactca gaatggctct ttcatccaac
      721 gccatttttg taatggcagg ttctttcaca tcggttggca gattggattt gatagctgag
      781 atttttcgct gagcttcctg tacggcaaga ttagcatctg taccggcatt cagttcaatc
      841 acaatcacag atactccttc catagaagta gaactgattt tctttaagtt ctcaacggtc
      901 gaaagagcgt cttcaatctt cttcgttacc gttgtttcca cttccgatgc tccggctccc
      961 ggataaattg tttgcaccgt aaggataggc agctcgaact taggcattaa gttcagattg
     1021 agcgcattga atgatatcaa tcccccgaga gtcagcaacg taaaaattac ggcgactatc
     1081 aaaggttttt ttatggaggt ttctactata ttcatgatag aattattgga ttatatttag
     1141 tgttatgtta ggattattat ggcggtaaat atcaattgcc gtccctttta agggacggat
     1201 aataagttca aaacaaattg gctttagcca aacaaaatca gatagttata tttggctaaa
     1261 gccaagacat ttatctaatc tttcatccgt cccttaaaag ggacggcaat taattctcgc
     1321 ttaacataac attagttgat tacagaaact ttcgaaccgt ctgttaagtt gatttggccg
     1381 gtagtaacca ctttatcacc ttcgctaagt cccgcaacca cttccagatt cgaattaaaa
     1441 ctgcggcccg tggtaatctt caccagttta gccagattgc cgtttacaac atacaccgaa
     1501 ggatctttta cgctgcttac aatggcatca cgtggaatca tcagggtctt tccgctttta
     1561 cccatgttca cgcttacatt tacatacgtt cctgctttca acttgtcttt tccattgttg
     1621 gcaataagca cttctaccgg ataagtgtgt gaggcacttg ctttcgggct gatattcgag
     1681 atttttccgg tgtatctggc ttccggatgt acatcggtag ttacattgat ttgttgtccc
     1741 tgacgtagtt cgtaagcatt cgattcggac acatccaaca ccactttcag ttccgagata
     1801 tcggcaattc cggcaatggc agcacccaca ttaacgtaag ctcctaattc tgtgttttgt
     1861 gcggtgatat agccgctgaa aggagctgtg attttagtat catcccattg ttttttagca
     1921 ttttccagtt gaatggcagc gttttcatac cctaacttaa tatcacgcaa ttgcgtatcg
     1981 gaaatagcat cccctttacg caaggcctgg taacggttca ggtcatcttt gtacttgtcg
     2041 taattcagct tggcattatc ataagccagt cgtttgtacg tatcatcaat tttagctaat
     2101 acttttccct tcgctacaaa atcacccatt ttgaaattaa cctgaataat tttgccggca
     2161 ctttcagaag ctacatttac ttccttgcaa ggttgggcgg ttcctaccaa ctccaggttt
     2221 ccgtttgttt ctttcatttc ggtcggagcc actgttacag ccacatcgct ttggcctgtt
     2281 tttacttcct tgcgactgtc aattactttt ttgttggaag ccaacgtcca tgtcattacg
     2341 ccaagcattg taattactgc tgcacctgcg attattgttt gctttttcat atgatttatt
     2401 atttatagcg ggatttatat gttgtaatta ttaattgatt aaatttttta tctcgccgtt
     2461 tagcgaaatg attttcaact cggaatcttt gaaattatac aaagcggtga ggtaacctgc
     2521 ctgagcattg ttcaacccgg tttcatcctg tagcagactg ctcatggtag ccataccctc
     2581 gttatacttc aggctggttt ctttgtagac tttttcagcc agttgcaaat tttgtttctg
     2641 gcgggttacg ttgattctat tgttgttgta agtatttaaa gcattccggt aatcaaggct
     2701 caacgcttct ttcgtattat ccatcgttaa ctctgttcgc cgggtgtcca aatcggcctg
     2761 ccgggctttc gaacgttttt caaacccatc aaaaaccggt acggaaagcg tcaccgtgaa
     2821 gtttgcatat gggaaccatt tattgtcgct accggagctg aaataggttt taaaatcgtt
     2881 ttgcaatccc tgataggcag cttgccccga cacggataat gatggtacat atccggcatt
     2941 tatcagtttt ttattcagag aataaagttg tttttgcgac tccagcatac ggatgtttac
     3001 gtttgatgaa aagtcattca tcaataccgg tttgtcgttc aacagctcgg ttccgatcgt
     3061 atcggtcagc tcaataggag tgtcgagagc tatatcaagc aaatacttaa tggtatttaa
     3121 ttgttgctcc tgagctgctt tggtgttgct cagttgagtg taggtatttt caaggttcac
     3181 gttaacccgg tccaggtcaa tctgctttcc tattccgtta tcgacagtaa cctgagtaat
     3241 tttctttaaa cgttcgccac gttcaatatt gctttcaatc agtttttgct gttcaatagt
     3301 ggtcaatgcc agtgcataca ttttagccac ctgaataccg acttcctctt tcgatttttg
     3361 tatgccgagt tcgtttatat tgtcggcttg tttggcaagt ttcagggccg taagtgctgt
     3421 ttgattataa ataacctgac tgattgaaa
//
LOCUS       DATDNM010000258         3260 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_779560, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000258 DATDNM010000000
VERSION     DATDNM010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3260
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_779560"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..726)
                     /locus_tag="VI413_04405"
     CDS             complement(46..726)
                     /locus_tag="VI413_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019539316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HEY6913897.1"
                     /translation="MIGTLVNTAAVIIGGTIGLMLKKNMPERVTTIYFQAVGLFTLAN
                     GISMVVKMEHILIVVGSLAIGSLLGEWLNIESGAERMSNYLKKRFRIGSDKFSEGLIT
                     AFLLFCIGSMTILGTIQEGTGGSSDLLFTKSLMDFFSALLLASAFGIGVIVSAIPLLL
                     FQAALTLLAMYASSFFTPTIILGLTSVGGILLIGLGLNILEIKRLRIMNMLPALLVVV
                     LLLWIFVK"
     gene            1032..2108
                     /locus_tag="VI413_04410"
     CDS             1032..2108
                     /locus_tag="VI413_04410"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913898.1"
                     /translation="MIKTTYRIFLLLGLCTTLVSWGSKGHYTINNKCPESFPSSMAAF
                     RVWADSLDIHGSDADNRKSSDSDEGPKHYLDIDNYAEFNSTGRIASTYDSIVSRHGAS
                     YVIDNGTLPWATRNMFDTLKADFKSLKWHKAMLDASDLGHYVGDGHMPLHITANYDGQ
                     KTGQSGIHSRYESTMVATYISSLSSYSGSSVQHITNINKYIFDYIYTNHHYVDSVLAA
                     DTYAKGIAGNTTSSLYYSSLWNKTRFTTTLFRNASHALAELIYTAWVDAGSPAFGAKT
                     VPNALNNTNVATISVYPNPTNGVLNLKGDDALKTEVCTITGTTVGIFYDNLIDLSHLS
                     NGMYILSIYNKEGLLKKEKILLAK"
     gene            2439..>3260
                     /locus_tag="VI413_04415"
     CDS             2439..>3260
                     /locus_tag="VI413_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007214983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEY6913899.1"
                     /translation="MKKITLICMTSLLMACGAEKATTPKIENFKYTVDKFADIEILRY
                     RVPDFENLSLKQKEMIYYLTQAALEGRDILYDQNNKYNLSIRRTLEAIYVNYRGDRKS
                     ENFERLTTYLKRVWMGNGIHHHYSEDKFVPEFSEKFFAEAINSIDSTKLPLSQGETVK
                     ELIAKLEPVIFDPTVYPKRTNQAEGVDLIKTSANNYYGDGVTQDEVEAFYGKMKNPND
                     STPISYGLNSKLVKENGVLVEKTYKVGGLYSAAITRIIGWLEKAAAVAENDKQKDV"
BASE COUNT         1096 a          713 c          612 g          839 t
ORIGIN      
        1 cctcaatttg gggaattatg agactgcgat tgtgaacgag tggagttatt ttacaaatat
       61 ccaaagcagc aatacaacta ccaaaagtgc aggcagcata ttcattatcc gaagtctttt
      121 aatttcaaga atattaagcc ccaaaccaat cagaagaatg ccaccaacgc tggtaagacc
      181 cagaataata gttggagtaa aaaacgaact tgcatacatt gccaataatg tcaatgcagc
      241 ctgaaaaagc aacagcggaa tggcagaaac aataactcct ataccaaatg ctgaagctaa
      301 taatagcgcc gaaaagaaat ccatgagcga cttagtgaac aataagtcgg atgaacctcc
      361 cgttccttcc tgaatggttc cgagaatagt cattgaacca atacaaaata gcagaaaagc
      421 ggtaatcagc ccctcggaaa atttatcgct gccaatacgg aaacgttttt tcaggtaatt
      481 actcatgcgc tctgccccac tttctatatt caaccattcc cccaaaagcg aacctatagc
      541 taaactgcca acaactataa gaatatgttc cattttcacc accatggata tgccattagc
      601 aagtgtaaac aaccctacag cctgaaaata aatagttgtt acgcgctcgg gcatattttt
      661 ttttagcatt aaaccaatag ttccaccgat aataactgct gctgtgttga caagggttcc
      721 gatcataatt tgcattcaat atttaataaa aaatgagaat tgcaaatgta agaaaattta
      781 gagaaacagc acataaaaca aaccgattga tttcaaaaac gaaatcaatc ggttctgtta
      841 caataaaaac acctccgcat aacataattt tatatcgtag ggggtataaa caatatctaa
      901 aataataccg gacagctatt ttgcatggtt acctattttg tttatctttg tcggcttgaa
      961 tttttatgca caatattgtc ataaaataat ctttcaacag ttttctatca ttttcaatta
     1021 tagtttccga catgatcaaa actacatacc gtatctttct tttgcttggt ttgtgtacaa
     1081 cccttgtaag ctggggcagc aaagggcact acaccataaa caataaatgt cctgaatcat
     1141 tcccttcatc catggctgct tttcgtgttt gggcagattc acttgacata cacggatcgg
     1201 atgcagacaa ccgcaaaagt tccgattctg acgaaggccc gaaacattat cttgatatag
     1261 ataattacgc cgaatttaac tctaccggac gtattgcctc tacatacgat tccattgtga
     1321 gcaggcacgg tgcaagctat gtcattgata acggaacgtt accgtgggca acccgaaata
     1381 tgttcgacac ccttaaagca gattttaaaa gcctgaaatg gcataaagcc atgctggatg
     1441 catcagactt ggggcattat gtaggcgacg gacacatgcc attacatatt acggccaatt
     1501 acgatggaca aaaaacaggt cagagcggca tacattcgcg ctacgaaagt actatggtag
     1561 ccacatacat ctcgagccta tcctcttatt ccggctcatc ggttcaacac ataacaaaca
     1621 taaacaaata tattttcgac tatatttata ccaatcatca ttatgtagac agtgtgcttg
     1681 ccgccgatac ttatgccaaa ggcatagccg gaaacaccac atcctcgctc tattattcat
     1741 cgttatggaa taaaacacga tttaccacca cacttttcag gaatgcatcg cacgcacttg
     1801 ccgaattgat ttacacagca tgggttgacg caggaagtcc ggcttttggt gcaaaaacag
     1861 ttccaaatgc gcttaataat actaatgtgg ctacaatttc tgtttacccc aaccctacca
     1921 acggggtgct aaacctgaag ggcgacgatg cactgaaaac cgaagtgtgc accatcaccg
     1981 gtacaaccgt gggtatattt tacgacaatc tcattgattt aagccattta tccaacggaa
     2041 tgtatatttt gagcatttac aacaaagaag gattgctaaa gaaagagaag atattgctgg
     2101 caaaataagt ttatcctgtt aaaaagcatt ccgtaaggaa aaaacgttcc aaaaggcgtc
     2161 tcaacaaacg atgtgatcgt ctcaacaaac gatgtcatca tctcgacaac cgatgtcatc
     2221 atctcgacaa acgatgtggt cgcctcaaca accgatgtca tcatctcaac aaccgatgtg
     2281 gtcaactcaa caaccgatgt aattgtctca acaaacccgg aagtcgtctc aacagttggt
     2341 actgccatct ttacatgaac taaaaaaaat ccttacattt gcaacacaaa acaattattc
     2401 aacttattcg tattaaacaa tcaaattcgc agttgaaaat gaaaaaaata accctaattt
     2461 gtatgacgag cttactgatg gcttgtggcg ctgaaaaagc caccacacca aagattgaga
     2521 atttcaaata tacggtggat aaatttgccg atattgagat tttgcgctac cgtgttcccg
     2581 attttgagaa cctgagttta aaacaaaaag agatgattta ttatctcacg caggccgcac
     2641 ttgagggccg cgatattctt tacgaccaga ataacaagta caacctgagc atccgccgca
     2701 cgctggaagc aatatatgta aattaccggg gcgacaggaa gtctgagaat tttgaacgac
     2761 tgacaactta cctgaaacgg gtgtggatgg gcaatggcat tcaccaccat tattccgaag
     2821 ataagtttgt gccggaattt tcagagaaat tctttgcaga agctattaac agcatcgatt
     2881 caacaaaatt accattatcg cagggtgaaa ctgtaaaaga attaattgcc aagctggaac
     2941 ctgttatttt cgacccgacc gtttatccga aacgcaccaa ccaagccgaa ggcgtagatt
     3001 tgatcaagac ttccgccaac aattattacg gcgatggcgt aactcaagac gaagtggaag
     3061 ctttctacgg caaaatgaaa aacccgaatg acagcacacc catttcgtac ggactgaaca
     3121 gtaaactggt gaaagaaaac ggcgtgttgg tggaaaaaac ctacaaagtg ggtggacttt
     3181 acagtgcagc cattacacgc attatcggtt ggttggaaaa ggcagctgcc gttgccgaga
     3241 acgacaaaca gaaagatgtg
//
LOCUS       DATDNM010000259         3920 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1421025, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000259 DATDNM010000000
VERSION     DATDNM010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3920
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1421025"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..577
                     /locus_tag="VI413_04420"
     CDS             <1..577
                     /locus_tag="VI413_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009038898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HEY6913900.1"
                     /translation="IKSNITWSHIPVILLTARTAEENQIESFELGADDYITKPFNLDI
                     LKLRILRIIEWNLRSHHAFSQKLEVEPSEITITSLDEKLIEKAIQIVEGHMSDTEFSV
                     EMLCDILGLSRGHLYKKLMAITGKGPAEFIKVVRLKRGKQLLGKSQLQIAEIAYEVGF
                     NSPKRFTKKFREEFGMSPTEYIRSLKKNEVE"
     gene            724..2301
                     /locus_tag="VI413_04425"
     CDS             724..2301
                     /locus_tag="VI413_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007214300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6913901.1"
                     /translation="MKRISLLLSVLLFFYMSYAENSIGYNNPVIPGFHPDPSVCKVGE
                     DFYLVTSSFEYFPGVPVFHSKDLVNWEQIGHCLTRESQLNLNKSRASGGIYAPTIRYN
                     KGVFYMITTNVSRGNFIVNTKDPAGEWSDPVWLKQTGIDPSLYFEGDKCYLTSNPGNT
                     IYLSEINPLTGEQLTGSRAIWSGTGGRYPEAPHIYKKDGWYYLMISEGGTEYAHRVTI
                     ARSRNIDGPYESNPSNPILTHMNVNAQNNPIQGTGHADFVQANDSSWWMVCLAFRPQS
                     GLHHMLGRETFLAPVRWDKNAWPVVNGNGTIDLRMNVQTLPLQSVKQVSYSTNFDEQK
                     LGFEWNYMRNPNMKNYSLNDHKGFLRLKASTVTLDEIDSPTFVGRRQEHINFTATTSL
                     ELLNAQQGDESGLTVFLDNESHYDLLIKQDLKGKRFLVLKYRLGDLLSIATKIEIPEK
                     QVYLQVKGSADYYTFLYSLDGVTFQTLGKMNTRYISSETAGGFTGIFLGLFLTSENSK
                     SKAYADIDKFNYIPQDK"
     gene            2323..>3920
                     /locus_tag="VI413_04430"
     CDS             2323..>3920
                     /locus_tag="VI413_04430"
                     /inference="COORDINATES: protein motif:HMM:NF024295.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 44 protein"
                     /protein_id="HEY6913902.1"
                     /translation="MNFHIKQKCLLIVLLFFGVVPTNAQDATITIDAAQGKRAVSPYI
                     YGANNWFDKTTQFYKDAGLKMARTNGGNNATKYNWRKRISSHPDWYNNVYTNDWDKTS
                     QSAATNLPNIQVMWAFQLLGRVASNANNNFNDWGFNKSQYWEGVGWNLAGGGTVDTTG
                     GTKKLGKAGDMSLYTQEWPADSTVGILNHFFQPKPQGLGLNKNQFVYWNMDNEVDCWN
                     GTHDDVMPTLIVASAFMDNYIATAKKARALFPGIKLCGPVATSEWQWFKWGSESIRVN
                     GKYYSWLEYFIKRCADEEKASGVRVLDVLDIHNYAYAANDSAALQLHRMYYDQTYNYP
                     GANGIYTINGGWDTRIKSEYIFKRINDWLTTYFGANSGITCGVSEWHSATDQKNANST
                     AVVYASHLGTFANNGVELFTPWSWYPGMWETLHLFSRYAKNYSVSSVSSNENTVSAYT
                     TVNEKADSITVILVNRDMNVSRTATINLNNFIVSDGNYSTLQLSSLPTTETFNSHTNN
                     ALKLNSATVNSNSFTITVPALSVTA"
BASE COUNT         1271 a          673 c          823 g         1153 t
ORIGIN      
        1 gattaaatcg aatattacat ggtctcatat acctgtaatt ctgcttactg ccagaacggc
       61 tgaagaaaat caaattgaaa gttttgaatt gggagcagac gattacatta caaaaccatt
      121 taatctggat attcttaaat tgaggatatt gagaattatt gaatggaacc tgagatctca
      181 tcatgcattt agtcagaaat tagaggttga accgagtgaa atcacgatta catcgttaga
      241 tgaaaagtta atagaaaaag caatacaaat tgtagaaggg catatgagtg atacggaatt
      301 tagtgtcgaa atgctttgtg atattttagg attaagccgt gggcatttat ataaaaaact
      361 aatggcgata accggtaaag gtcctgcaga atttattaaa gtagtaagat tgaaaagagg
      421 taaacaactg ctggggaaaa gtcaattaca gatagcagaa atagcctatg aggttggatt
      481 taattcgcca aaacgcttta caaagaaatt tagggaggaa tttgggatgt ctccaaccga
      541 atacattcga agtttaaaga aaaacgaggt ggaataatac aatatcacac taaacacgat
      601 acataatagt actcatgaat aaaaaagtta cggtattttt accgtaactt ttttttatct
      661 ctcaatgatt gatagttgta agttggttag attagaatta ctcattaaaa aatataattt
      721 ccaatgaaaa gaatttctct attgttaagc gttctgcttt tcttttacat gtcttatgcc
      781 gaaaattcta taggatataa taaccctgta ataccaggtt ttcatcctga tccaagtgtg
      841 tgtaaagtcg gtgaagattt ttatctcgta acaagtagtt ttgaatattt cccgggggtt
      901 ccggtttttc acagtaaaga tcttgtaaat tgggagcaaa ttggtcattg cctgacacgg
      961 gagtcacagc ttaatctgaa taaaagtcgt gcatctggag gaatatacgc gccaacaatt
     1021 agatacaata aaggtgtttt ttatatgatt acaaccaatg tctccagagg aaattttatt
     1081 gtaaatacca aagatccggc cggtgaatgg tcagaccccg tttggcttaa acaaaccggg
     1141 attgatccat cgctttattt cgaaggcgat aaatgttacc tgacttcaaa tcctggcaat
     1201 actatttatc tgtccgaaat aaatccgctg accggtgaac agctaaccgg aagccgtgct
     1261 atctggagtg gtaccggggg cagatatccc gaagcaccgc atatctataa aaaggatgga
     1321 tggtattatt tgatgatttc tgaaggtgga accgagtatg ctcacagggt aacaattgcc
     1381 agaagtagaa atattgacgg accttatgaa tcaaatccat cgaatcctat tttgactcat
     1441 atgaatgtga atgctcaaaa caatcctatt caaggtaccg ggcatgccga ttttgtacag
     1501 gcaaacgata gttcgtggtg gatggtatgt ttggctttcc ggccgcagtc tggtttacat
     1561 catatgctag gtcgcgagac ttttcttgcc ccggtgcgtt gggataaaaa cgcatggccg
     1621 gtggttaatg gcaatggaac catcgatttg agaatgaatg tccagactct accgctccaa
     1681 tctgtaaaac aggtttcgta tagtacaaac ttcgacgagc aaaagctggg ttttgagtgg
     1741 aattatatgc gaaatcccaa tatgaagaat tattcattga atgaccacaa aggctttctg
     1801 cgtttaaaag cttcgacagt aactttagat gaaattgatt ctcctacttt tgtgggtaga
     1861 aggcaagaac atataaattt tactgctacc acatcattgg aattactcaa tgcgcaacaa
     1921 ggtgatgaat ccggacttac agttttttta gacaatgaat cgcattacga cttgttaatt
     1981 aaacaggatt taaaaggcaa acggttctta gttcttaaat acagacttgg agatttatta
     2041 agcattgcaa ccaaaatcga aatccctgaa aagcaagttt atttgcaagt aaaaggtagt
     2101 gctgattact ataccttttt atattctctt gatggagtta cattccagac attaggcaaa
     2161 atgaacaccc gctatattag ttccgaaacc gctggcggat ttacgggaat tttcttagga
     2221 ctttttctaa cttctgaaaa tagtaagtcg aaagcctatg ctgatatcga taagtttaat
     2281 tacataccgc aagacaaata aagtaactga aaataatata ttatgaattt tcacattaaa
     2341 cagaaatgct tattaattgt actgctgttt ttcggagtag ttccaacaaa tgcacaggat
     2401 gcaacaatta caattgatgc agctcagggc aaacgtgctg tatcacccta tatttatggt
     2461 gctaataatt ggttcgataa aacaactcag ttttacaaag atgccgggct aaaaatggca
     2521 cgtaccaatg gtggaaacaa tgccaccaag tacaattggc gtaaaagaat ttcgagccac
     2581 cccgattggt ataacaacgt atatacaaac gactgggata aaacgtctca aagtgctgcg
     2641 acaaatcttc ctaatattca ggttatgtgg gctttccagc ttttaggccg ggttgcatca
     2701 aacgcaaata ataatttcaa tgattggggt tttaataagt cgcaatactg ggaaggcgtt
     2761 ggttggaatt tagccggtgg cggtactgta gataccaccg gaggaacaaa aaaactaggg
     2821 aaagccggtg atatgagtct gtatacacag gaatggcctg ccgattctac tgttgggatt
     2881 ctgaatcatt tttttcaacc aaaaccacaa ggtttgggat tgaacaaaaa tcaatttgtt
     2941 tactggaaca tggacaatga agtggattgt tggaacggaa cccatgatga tgtgatgccg
     3001 actctgatag ttgcatctgc atttatggat aattatatag ctacagctaa aaaagctcgt
     3061 gctttattcc ccggaatcaa actttgtggc ccggtagcaa ccagtgagtg gcagtggttt
     3121 aagtggggta gcgaatctat aagggtaaat ggcaaatatt atagctggct cgagtatttt
     3181 ataaaaagat gtgccgacga agagaaagct tcgggtgtgc gtgtgcttga tgttttggat
     3241 attcataatt atgcatacgc agctaacgat tctgctgcac ttcagttaca ccggatgtac
     3301 tatgatcaga cttacaatta tcctggagcc aatggaatat atactatcaa tggtggttgg
     3361 gatacccgta ttaaaagcga atatattttc aaacgaatca atgattggtt gacaacgtat
     3421 tttggagcaa acagcggaat tacatgcggt gtaagtgagt ggcattcggc aacagatcag
     3481 aaaaatgcaa attcaacagc agttgtgtat gcttcgcatc tgggtacatt tgccaataat
     3541 ggggttgagc tgtttactcc ctggagctgg tatccgggta tgtgggaaac gcttcattta
     3601 tttagcaggt atgccaaaaa ttatagcgta tcaagtgtgt caagcaacga aaatactgtt
     3661 tcggcttata ctactgtgaa cgagaaggct gattcaataa cagttattct ggttaaccga
     3721 gatatgaacg tttcacgcac tgccaccata aatctgaata atttcattgt aagcgatgga
     3781 aattattcaa ctttgcaatt atcatctttg ccaactacag aaacattcaa ttctcacaca
     3841 aataatgcac ttaaattgaa ctctgcaaca gttaattcga attcgtttac cataactgta
     3901 cctgctcttt cggtaacagc
//
LOCUS       DATDNM010000260         3084 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_779675, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000260 DATDNM010000000
VERSION     DATDNM010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3084
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_779675"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..468
                     /locus_tag="VI413_04435"
     CDS             <1..468
                     /locus_tag="VI413_04435"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEY6913903.1"
                     /translation="VFKSSKKSQAATKTETSAPETKVFSVPAPATDARPNPSSDTMYE
                     PSDKPATGTATTGKPVSVRSENFTLTAEDQAAYGNKKYFVIVGSFSSNENAGRFKQEL
                     GQQGFKPIVLHSETGYYRVCVDSFNDEAAARSRVQNIRTQYPKMADSWLLIRK"
     gene            complement(1135..2289)
                     /locus_tag="VI413_04440"
     CDS             complement(1135..2289)
                     /locus_tag="VI413_04440"
                     /inference="COORDINATES: protein motif:HMM:NF006569.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine aminotransferase"
                     /protein_id="HEY6913904.1"
                     /translation="MLQSKLPIVKGNSIFSAVNKLITETGAIDLSMGRTDFPCPEKLA
                     ELAATYIRSGYNNYAPNEGIIELREEISERVAQLYQHTYNPETEITITAGHVQAIMTA
                     INSVIKEEDEVILFEPAYESYAPAIASTGGRPIYVALKLPDFHIDWEEVRKMITSKTR
                     MIIINTPHNPSGSVLAESDLIQLQRLIIGTNIVVLSDEVFESIMFDNSTHQSVAKFDK
                     LAERSFVVSSFGPLFNINGWGLAYIMAPEKFMYEFRRIQQFQISNVNTPLQYALSEYL
                     RMDDSKKDITELYQGKRNYFNRLLGGSLFKVIPSQGSYFEILDYSAITDESDADFTFR
                     LATDYGVGVIPVSAFLHEKNKMKMVRICFAKNNETLELAAERLRLVPSLK"
     gene            complement(2390..>3084)
                     /gene="recO"
                     /locus_tag="VI413_04445"
     CDS             complement(2390..>3084)
                     /gene="recO"
                     /locus_tag="VI413_04445"
                     /inference="COORDINATES: protein motif:HMM:TIGR00613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEY6913905.1"
                     /translation="SIKYSETSIIAVIYTEAYGRQSFMVNGARGKKSIAKTVAFQPLY
                     LLDLEIYYHAGREIHRLKDVRISNPFSTIPFDIRKTSEVMFLAEVLYKCLKEEEPNRE
                     LFDFIFNSLSYFDLTDQGISNFHIWFLFKLTRFLGIYPSSDNAMISNFFDLQKAQFVS
                     HEPLHGQFADKHLTSIFAKLFTIDQASLHALNYNHNDRRLLLDMLLEYYRVHFDNLGE
                     IRSLSVLKEVLK"
BASE COUNT          953 a          634 c          628 g          869 t
ORIGIN      
        1 gtattcaagt cgtcaaagaa aagccaagcc gcaacaaaaa cagaaacatc agctcctgaa
       61 accaaagtat tctcggtacc ggcccctgct accgatgcac gccccaaccc ttcatcggat
      121 accatgtatg aaccttcgga caaacctgct acaggaacag ccaccacagg taaaccggta
      181 tctgtacgca gtgaaaactt cacccttacc gctgaagacc aggctgctta tggaaacaaa
      241 aaatactttg taatcgtggg aagcttcagc agcaatgaaa atgcaggcag attcaaacag
      301 gaactgggcc agcaaggctt taaacccatt gttctgcaca gtgaaacagg ctattacaga
      361 gtttgtgtgg atagttttaa tgatgaggct gctgcccgta gccgcgttca aaatatcagg
      421 acccagtatc ctaaaatggc cgatagctgg ttactgatca gaaaataaat tgcaacaact
      481 aaaatcctat aagggatgcc atttttggca tccctttttt tatgcccggt ggaataaaaa
      541 taagcattaa gataaattct taatgaactg gaattatgac ttgatctaac cgtaacacat
      601 ttgcttttta tgtaacccat tagatagtca ttcctaaggt ttctgtaatt tgcattacag
      661 aaaccttaca gaaactatac agaaacctta gagaaactcc aaattggcta tggtttaaca
      721 acagctcatt tccatgtttt ttagcacgga ttttattgct gaaaatttta agcgttgaca
      781 aaaggtaaag tttcaaaagg ggaacgccgg gatatagcga atttcaatca atttgcattc
      841 acctgctttt taacaacccg aagtattttc aatccacagt tatccattac cattgtaaac
      901 ggtctttaca ggattgtttt taatgattaa aaatcaaagg aattctatgg gtaaaagcga
      961 gtattggtca agaaaaaaac gaagccaaac ttaatataaa ggttaaggtt taaaggttaa
     1021 agttatagtc atgactcgaa gcagctataa atcagctgca ccatttgaag gctattatgc
     1081 attatgcaca aggcacatct caacctgaaa ctttaaattt taaactttaa acttttattt
     1141 cagcgaggga accagtcgca ggcgttcggc cgccagttcc agggtctcgt tgttcttggc
     1201 aaaacagatg cgaaccattt tcattttgtt cttctcgtgc aggaatgccg atacaggaat
     1261 tacgcccacc ccgtaatccg ttgcaaggcg gaaggtaaag tcggcatccg attcatctgt
     1321 aatggctgag taatccagta tttcaaagta acttccctgt gacgggatca ccttaaacag
     1381 acttcccccc aataaacggt taaagtaatt acgctttccc tggtacagtt cggtgatatc
     1441 cttttttgaa tcatccattc tcaaatattc agacagcgca tactgaagcg gggtgtttac
     1501 attggaaatc tggaactgct gaattctgcg gaattcatac ataaactttt caggggccat
     1561 gatataggcc aatccccatc cgttgatgtt gaacagcggg ccaaaagaag agaccacaaa
     1621 gctacgttca gcgagtttat caaatttggc cacactctga tgggtgctgt tatcaaacat
     1681 gatggattcg aatacctcat cactgaggac cacgatgttg gtgccgatga tcagtcgttg
     1741 caattgtata aggtcggatt ccgccaatac cgatccgctg ggattgtgag gagtattgat
     1801 gatgatcatc ctggttttgg aggtaatcat cttacgcact tcttcccagt cgatatgaaa
     1861 atcgggcaat ttgagggcca cataaatggg ccgtccccct gtactggcaa ttgcgggtgc
     1921 ataggattca taagcaggtt cgaagaggat tacctcatct tcttccttga ttacggaatt
     1981 aatggcagtc ataatagcct gtacatgacc ggcggtgatt gtaatttcag tctccggatt
     2041 ataggtatgc tggtacaatt gcgctacccg ttcagaaatt tcttcccgta attctataat
     2101 accttcattg ggtgcataat tgttgtaacc cgagcgaata taggtcgcag ccagttctgc
     2161 cagtttttcg gggcagggaa aatcggtcct tcccatcgaa agatcgatgg caccggtttc
     2221 agtaataagt ttatttacag cggagaatat actatttccc ttgacaattg gtagttttga
     2281 ttgcaacatt ttgtataacg attgatgtac aaagttaaaa aaatatgcta ttctcttgcc
     2341 tttacactaa gtaaggattt aaatatacta aatttattta ttaaacaaat catttgagca
     2401 cttctttcag cacagataat gaacgaattt cgcctaaatt gtcaaaatgg acccggtaat
     2461 attccagtaa catatccagc agcagacgcc ggtcgttgtg attgtaattt aaggcatgaa
     2521 gcgatgcctg gtcgatagta aacagcttag caaagatcga tgttaaatgt ttgtcggcaa
     2581 attgcccgtg cagcggttcg tgggatacaa actgcgcctt ttgaagatca aaaaaattac
     2641 tgatcatagc attgtcgcta ctgggataaa tacccaaaaa ccgggtaagc ttgaaaagaa
     2701 accagatatg aaaattgctg atcccctgat cggtcaaatc aaaatagctt aatgaattga
     2761 aaataaaatc aaacagttct ctattgggtt cttcttcctt taaacatttg taaagaacct
     2821 cggccaaaaa catcacctcg gaagttttgc gaatatcaaa tgggatggta gaaaaaggat
     2881 tggaaatacg tacatctttc aagcggtgaa tttcacgccc cgcatggtaa taaatctcca
     2941 gatccaacag gtacaacggc tgaaatgcaa cggttttggc tattgatttt ttaccgcgtg
     3001 caccgtttac catgaaagac tgacgtccgt aggcttcggt atagatgacc gcaataatac
     3061 ttgtttcaga gtattttatg gaac
//
LOCUS       DATDNM010000261         4751 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_139778, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000261 DATDNM010000000
VERSION     DATDNM010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4751
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139778"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..379
                     /locus_tag="VI413_04450"
     CDS             <1..379
                     /locus_tag="VI413_04450"
                     /inference="COORDINATES: protein motif:HMM:NF038128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="choice-of-anchor J domain-containing protein"
                     /protein_id="HEY6913906.1"
                     /translation="ASGYKSPTDYASESWLISPAIDLSKVTTATLMFDHALNYVSTMA
                     NKQNYISVWVSTDYQSGLPNTATWTQVTIPTYPPGTNWTFISSGAADLSSVARKSGVR
                     IAFKYVSIAGDAATWEVKNVVVY"
     gene            complement(452..889)
                     /locus_tag="VI413_04455"
     CDS             complement(452..889)
                     /locus_tag="VI413_04455"
                     /inference="COORDINATES: protein motif:HMM:NF025005.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KTSC domain-containing protein"
                     /protein_id="HEY6913907.1"
                     /translation="MKRINEYKKLFNVEPGTDLKTLKTTYRNLVKEWHPDKFAADDEL
                     ALEAELKSRQIIDGYHFLVSIAPETIAANEEEHLVSADSGIADFKLKGQLLEVSFMDG
                     STYEYFGVSKNIYARLINADKQLRFAKRNIFNSYLYRKAKKAA"
     gene            1160..1903
                     /locus_tag="VI413_04460"
     CDS             1160..1903
                     /locus_tag="VI413_04460"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEY6913908.1"
                     /translation="MLQLLTILILIAVIGLAVYFYLKFRESVKQQKEMETRLHDLKSQ
                     VHPLQLETLEAKLNPHLFKNILNSIQSHAYQTYFAIDKLANVLDYILYESRKEFVTPK
                     EEIEFALNLIEINKIKVSPLFDLKVKTKVNNTEPLYEQKLLAPLISIDLIENAFKHAD
                     IQSPDAFISISMEFKDNHFGLTVANKISSKPPMKKEKGGIGIQTLEKRLRIIYEDNFK
                     LDSYIEDNVYVAHLNIDLFEYKVKVLAAR"
     gene            1869..2588
                     /locus_tag="VI413_04465"
     CDS             1869..2588
                     /locus_tag="VI413_04465"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6913909.1"
                     /translation="MNTKLKCLLLDDELPGLTYLKMLCEQIPELEVVKAFNQPDVFLA
                     ELAGLNFDLCILDIEMPHVNGIQLAELLKGKLIIFTTAHKEYAAEAFDLDAVDFVRKP
                     IELERLQKAVRKAIKQLSDDKHSKKFIHLNTDKGKSLIVFDQLCYIKSSGIDSRDKDV
                     VLKDGSRICLKNISFEKLQTILPPNRFCRINKQEIIALDIVQHFSFDQITSTIPGEQN
                     KPQLFYLSKVYRNAFLEKVKI"
     gene            2753..>4751
                     /locus_tag="VI413_04470"
     CDS             2753..>4751
                     /locus_tag="VI413_04470"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEY6913910.1"
                     /translation="MFKKFRNVFFYVLIIGSFSALMYWVDFMGSKQEIASKIILPPTG
                     KSHWVEFLHSLLQNIGHPLAILLAQIVTIILVARIFGWICKKIGQPTVIGEIVAGIVL
                     GPSLIGMYFPEFSNFLFPVQSLGNLQFLSQIGLILFMFIVGMEIDINVLKNKAHDAVV
                     ISHASIIVPFSLGMGLAYFIYQSFAPEGVRFTSFGLFIGIALSITAFPVLARIVQERG
                     IHKTRLGTIVITCAAADDITGWSILAAVIAIAKAGSFVSSLYTILLALAYVFVMIKIV
                     RPFLKRVGDLHTSSANLSKSIVAIFLVTLILSAWATEIIGIHALFGAFMAGAIMPANQ
                     KFRNIFIEKIEDIALVLLLPLFFVFTGLRTEIGLLNDTYLWQITGLIILVAITGKFIG
                     SALAAKFVGQSWKDSLTIGALMNTRGLMELVVLNIGYDLGILTPKVFAMMVIMALVTT
                     FMTGPALDLINWMFKSKAEDKINEISRISKFKILVSFGDPENGKILVRLANCLIKKTN
                     GGSAITAMHLFPSGKSHQFDLESYENESFAPIFEESKHINQKITTLFKVTNDIESDIT
                     EVANKGEYDLLLIGIGQSIFEGSLLGKILGFTTRIINPDRLLNQVTGRENIFENSPFD
                     ERTRSIIAKSKVSVGVLIDKGFTKTDQICIPVISPNDEFLIG"
BASE COUNT         1383 a          848 c         1004 g         1516 t
ORIGIN      
        1 tgccagcggt tataagagtc ccaccgatta tgcttctgaa agttggttga tctctccagc
       61 tatagatttg tctaaggtta caacagctac tctaatgttc gaccatgcat taaattatgt
      121 atcaaccatg gcaaacaaac agaattatat ctcagtttgg gtgtcaactg attatcaaag
      181 tggattgcca aatacggcga catggacgca ggtcactata cccacatatc ctccaggtac
      241 aaactggaca tttatatcgt cgggagcagc cgacttaagc agtgtggcac gaaaatcagg
      301 cgttcgcatt gcttttaagt acgtgagtat tgccggcgat gctgcaacct gggaagtgaa
      361 aaacgtagtc gtttattaaa gaaactatta atacaaacag aaacacccgc tatagaattt
      421 ctatagcggg tgttttttta ttgtaaatca tttaagctgc tttcttagct ttgcggtaca
      481 aatacgaatt gaaaatattg cgtttggcaa atcgtaattg tttatcggca ttaatcaggc
      541 gggcataaat gttttttgaa acgccgaaat actcgtatgt cgatccgtcc ataaatgaaa
      601 cctccagcaa ttgtcctttt agtttgaagt cggctatgcc ggagtcggca gaaaccagat
      661 gctcttcttc atttgcagct attgtttcgg gggctatgct taccagaaaa tgataaccat
      721 cgattatttg ccggcttttc agttctgctt caagtgcaag ctcatcatct gccgcaaatt
      781 tatcaggatg ccattctttg actaagttac ggtaagtagt ttttagtgtt ttaaggtcag
      841 tgccgggttc aacattaaat aatttcttgt attcgttaat acgcttcata aataggtgtt
      901 tctgtaagtt ttaattgtat ttgcttcgca gctttttaat cgggcgcaaa ggtagtgttt
      961 tacagctttg aaaacgaatt atttagtgtt tatgactaaa atacccgttt gagattattt
     1021 atttaatacg atattgacta tttctcgtta ttcagatttg ctaaatttga tttatataga
     1081 tcaaaacctc aacagaatga attttgcgca ttgtattaaa atgactattt ttgaaaaaaa
     1141 ataaatgatt cttgtaccaa tgttacaact tcttactata ctcattttga ttgcagttat
     1201 tggactggct gtgtatttct atttgaagtt tcgtgagtca gtgaagcagc aaaaggagat
     1261 ggaaactcgg ttgcatgatt tgaagagtca ggttcatccg ttgcaactgg aaacgttgga
     1321 agctaaatta aacccgcatc tgtttaagaa tatcttaaac tctatccagt cgcatgccta
     1381 ccagacctat tttgcgattg acaaactggc caatgtgttg gactatattt tgtacgaaag
     1441 ccgcaaggaa tttgttaccc caaaagagga aatagaattt gcattaaacc tgatagagat
     1501 taataaaatc aaagtgagcc cgctattcga cctgaaagta aaaaccaagg tgaataatac
     1561 cgaaccgctg tatgaacaaa agctgctggc gcctttaatt tccatcgatt tgattgaaaa
     1621 cgccttcaaa catgccgata ttcaaagtcc tgacgcattt atttcgattt ccatggagtt
     1681 taaagacaat cattttgggc tgacggttgc caacaaaatt tcgtcgaaac cgcctatgaa
     1741 aaaagaaaaa ggtggaattg gcatacaaac actggagaaa cgattgcgga ttatttatga
     1801 agataatttt aaactcgata gctatattga agataatgta tatgttgcac atttaaatat
     1861 cgacctcttt gaatacaaag ttaaagtgct tgctgctcga tgatgaactg ccggggctga
     1921 cgtacctgaa aatgctctgc gaacaaattc cggagttgga agtggtaaaa gctttcaacc
     1981 aacccgatgt gtttttggct gagttggccg gccttaattt tgacctttgc attctggata
     2041 ttgaaatgcc tcacgtaaac ggtattcaac tggcagagtt actcaagggc aagctcatta
     2101 tctttaccac tgcccacaaa gaatatgcag ccgaggcatt cgatttggat gcagtggatt
     2161 ttgtacgcaa gcccattgag ttggaaagac tccaaaaagc ggtacgaaaa gccattaagc
     2221 agctgagtga tgataaacac agtaagaaat tcattcattt gaacacagac aaagggaaat
     2281 cgctgatagt gtttgaccaa ctgtgttaca ttaaatcctc cggaattgat agccgggata
     2341 aggatgtggt gcttaaagac ggatcgagaa tctgcctgaa gaatatctct ttcgaaaaac
     2401 tacaaactat ccttcctccg aataggtttt gccgtatcaa taaacaggaa ataattgcgc
     2461 tcgatattgt acaacatttc tctttcgatc agattacttc taccattccc ggtgaacaaa
     2521 acaaacccca gctgttttat ttaagtaaag tgtatcggaa tgcctttttg gaaaaggtga
     2581 aaatctgatt cattacattt tttttcagcc ttattacata ataggtctta ttcagttcag
     2641 aaccattgac tttcctgctt ctttattata tctttgtgtt aaaacaaagt tttattatgg
     2701 gtaaacccga taatcggcta tttctttgtt ccacattaaa acaccagaaa atatgtttaa
     2761 aaaatttaga aacgtttttt tttacgtgct gattatcggc agtttttcgg cattgatgta
     2821 ttgggtcgac tttatgggtt caaaacagga aatagcctca aaaataatct taccacccac
     2881 cggaaaatcg cattgggtgg aatttttgca ttcgttgttg cagaatatcg gtcatccgct
     2941 ggctattttg ctggcacaaa tagtaactat tattttggtg gcacgcatat tcgggtggat
     3001 atgcaaaaag atagggcaac ccactgtgat tggtgaaatt gtggctggta ttgtgctggg
     3061 accatcattg attggaatgt attttcctga gttttccaac ttcttgtttc cggttcagtc
     3121 gttgggtaac cttcagtttt taagtcaaat agggttgata ttgtttatgt tcatagtggg
     3181 aatggaaata gatatcaatg tattgaaaaa taaagctcac gatgcggtgg tgataagtca
     3241 tgccagcatt attgtgcctt tttcgctggg catgggcttg gcctatttta tttatcagtc
     3301 gtttgcaccg gaaggagtga ggtttacttc tttcggacta tttattggta ttgccttgag
     3361 tattactgct ttcccggttt tggcccgcat agtgcaagaa aggggaattc acaaaacacg
     3421 gctagggacc attgtcatta cctgtgctgc agccgacgat attacgggtt ggagtatcct
     3481 ggcagccgtt attgccattg ccaaggcggg ttcatttgtc agttctcttt ataccatttt
     3541 gttggcactt gcgtatgtat ttgtgatgat taaaattgtc cgcccgtttt taaagcgcgt
     3601 tggcgatttg catacatcca gtgctaatct gagcaaatct attgtcgcca tatttcttgt
     3661 aacgcttatt ttatcggcct gggcgactga aatcattgga attcatgctt tgtttggtgc
     3721 ttttatggcc ggagccatta tgcctgctaa ccagaaattc agaaatatat ttatcgaaaa
     3781 aattgaggat attgccctgg tgttattgct tccgttattc tttgttttta caggtttgcg
     3841 tacagaaatt ggtttgctga acgatactta tttatggcag attaccggct tgattatact
     3901 ggtggccata accggtaaat ttatagggag tgctttggct gcaaagtttg tgggtcaaag
     3961 ttggaaagac agcctgacta tcggtgcctt aatgaatacg cgtggattga tggagctggt
     4021 ggtgttgaat atcggttacg atttaggcat actgacgcct aaagtttttg ccatgatggt
     4081 gataatggct ttggtaacca cattcatgac cggtcccgcc ttggatttaa tcaattggat
     4141 gttcaaatcg aaagccgaag ataaaataaa cgagattagt aggataagta aattcaaaat
     4201 attggtgtcg tttggcgatc ccgaaaatgg caaaattctg gtacgtttgg ccaattgcct
     4261 cataaaaaaa acgaacggag ggtcggcaat aaccgccatg catttatttc caagtggcaa
     4321 atcgcatcaa tttgatttgg aatcatacga aaacgaaagt tttgctccca tttttgaaga
     4381 gtcaaaacac ataaatcaaa aaataaccac tctttttaaa gtgacgaacg atattgaatc
     4441 ggatattaca gaggtggcta acaaagggga atatgattta ctgctgattg gcattggaca
     4501 gtctatcttt gagggtagtt tattgggtaa aattttgggc tttactaccc gaatcatcaa
     4561 tccggatcgg ttgcttaatc aggtaacggg gcgggaaaat atttttgaaa attctccatt
     4621 tgacgaaaga acgcgttcta ttattgcaaa aagtaaagta tctgtgggag ttttgatcga
     4681 caaaggcttt actaaaactg atcagatttg cattcctgtc attagtccca acgacgaatt
     4741 cttgattggg t
//
LOCUS       DATDNM010000262         2605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1847742, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000262 DATDNM010000000
VERSION     DATDNM010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2605
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1847742"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1802
                     /locus_tag="VI413_04475"
     CDS             <1..1802
                     /locus_tag="VI413_04475"
                     /inference="COORDINATES: protein motif:HMM:NF024863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEY6913911.1"
                     /translation="IRKTYTILSITQMGVVGVNGESTLNYQGQGVWSGLLNMANVVTD
                     VNKNFNFRINSDNAYAIKRVKGTTNTVKMESQAAASNIPVEEINGLQDKGNYTVTLDM
                     NHYVYSAVDSLKITVMGSSVPSGTGATNNQGYIYLYTQQLKQRYAQSKEANWNVVNMS
                     IGGNSTRDVMGRVDRDLYPQFGRYVIFALSLGNEGIHGSTNQQGVFDQWKNNMLSLID
                     AARAKGLVPIVTNNYTRGDFDLSDYGYVKKMDLLIHEWDVPSVNLLGAIDDGAGRWAA
                     GYQNGTDVSHPNDAGHAELSYAMVPSLYNALRAGKPVPVKATGNYMTFDNTASMDQLV
                     YTPDNIVHPFTVSFDIKTTANGTIASFKQGSAYGYLKIDAATGAIVYQSPNTGAAQIK
                     GTVAVNDGQWHKITLTHFYARGETDLYSDNTLAGKLTEKLVPTVFNLNDSNGPATISC
                     RDLFFYRAGMNADEVAGLNAGKMLKSSLELYAPLNGQAATTAGQLINLAQSTTTLAKV
                     QLPTTGIKVPTQFSTVKVYPNPAQSRLTIEGFNQAKQYECAVYGIDGRMAFKQMIHNG
                     DALNVSALPTSHYVLVLKDKSSIEQVILSFTKN"
BASE COUNT          850 a          435 c          538 g          782 t
ORIGIN      
        1 tgataagaaa aacctacact atactctcaa tcacacaaat gggtgttgtt ggagttaacg
       61 gagaatcaac tctgaattat cagggacaag gagtttggtc cggtttattg aatatggcaa
      121 atgttgttac cgatgtaaac aaaaacttca attttagaat caactctgat aatgcatatg
      181 ccattaagcg cgttaaaggc accactaata cagtaaaaat ggaatctcag gccgctgcat
      241 caaatatccc tgtagaagaa attaacggtt tacaggataa agggaactat acggtcactc
      301 tggatatgaa tcattatgtc tattcggctg tagatagcct gaaaataaca gtaatgggtt
      361 catcggttcc ttcaggcaca ggagctacta acaatcaggg ctatatttat ctatatactc
      421 agcaattaaa gcaacgctat gctcaaagca aagaagctaa ctggaatgta gttaatatgt
      481 ctattggagg aaactcaacc agagatgtaa tgggtcgtgt tgacagggat ctttaccctc
      541 agtttggaag gtatgtgatt tttgcactct cgctgggtaa tgaaggtatt catggtagta
      601 cgaatcagca aggtgtattt gaccaatgga aaaacaatat gcttagcttg atagatgctg
      661 cacgcgccaa aggtttagtg ccaattgtga ctaataacta tacacgtggt gattttgatt
      721 tatcagacta tggctatgta aagaaaatgg atttgctgat tcatgaatgg gatgtaccaa
      781 gtgtgaattt gttgggtgca attgatgatg gagcaggtcg ttgggctgca ggataccaaa
      841 atggtactga cgtgagccat cctaatgatg caggtcatgc tgaactttct tatgcaatgg
      901 ttccttcgtt gtacaatgct ctcagagctg gcaaaccagt tccggtaaaa gctacaggaa
      961 attatatgac attcgataat acggcaagta tggaccaatt ggtatatact ccggataata
     1021 tcgtacatcc ttttactgtt tcttttgata ttaaaacaac tgctaacggc actattgctt
     1081 cgttcaaaca aggctcagct tacggttatt tgaaaataga tgcagctact ggtgctattg
     1141 tttatcagtc gccaaataca ggtgcagctc agataaaagg tacagttgct gtgaatgatg
     1201 gtcaatggca taaaattaca ttaactcatt tttatgcaag aggcgaaacc gatttgtaca
     1261 gcgataatac cctggcaggt aaacttaccg aaaaactggt accaactgtg tttaacctga
     1321 atgattctaa cggtcctgca acaataagtt gccgtgattt attcttctat cgtgcaggta
     1381 tgaatgcaga tgaagtagcc ggactgaatg ctggtaaaat gttgaaatca agtttggaat
     1441 tgtatgctcc acttaatggg caggcagcaa caactgcagg tcaattaata aacctggctc
     1501 agagtacaac tacgcttgca aaagttcagt tgccaacaac aggaataaaa gtaccaaccc
     1561 aattctcaac ggttaaagtg tatcctaatc cggctcagag tagactgact attgaggggt
     1621 ttaaccaggc taaacaatat gagtgtgctg tttacggaat tgatggacga atggctttta
     1681 aacaaatgat acataatgga gatgcattga atgtttcggc acttccgact tcgcattatg
     1741 tattagtact gaaagataaa agttcaattg aacaagtaat tttgagtttt acaaaaaact
     1801 aattgtgact tttggcaatt ctgtcggaag cttaaaccag ttgcccatag aataccacaa
     1861 ctcattcaaa aagaaggatt ccgaagttgt cggaatcctt tttttttgtg agaagtggtt
     1921 tccggaatga aaagtaacat gattatctgc aaactcttct gattgatttt attggggaaa
     1981 taaattactt tttttgaata cgaattgagc aaaggtcttc tatccaaatt tacagctacc
     2041 ataaatcaac gttttatatt ttttcagttg ctttacttgt tcttttttca gtttgcacgg
     2101 gtaataacaa caatgagata aaactaagcg gcatttcgca atacaatgct aatgcatgga
     2161 gtcggacgat gattgatgga atgtttcgtg aaattactac cgaaaagtcg gtttctgata
     2221 ttgcctgcga caccgctttt ttattgccat cctattttac caagtgtttc aaagaatgct
     2281 ttaataaaag tcctgccgat tatctgaagc ggataaagca ataaatacaa gctctgaatc
     2341 gttatattga tgacttttct attggtcaat tcataaagga aaaaattgtt gtaaatagac
     2401 ctccagagtt ttatactctg gcatgattaa tgcagaaaaa aataaatgca attgactgtt
     2461 atcttgctca aaaaaaggca ttttgtacaa aacaatcttc cgtttttttg cgttgaaaca
     2521 atagtaaata aggtgttaaa attaaaagtg aataagatgg gtaaaagaga agaattaagg
     2581 atattcagga agccgagtat tgaat
//
LOCUS       DATDNM010000263         2400 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1314487, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000263 DATDNM010000000
VERSION     DATDNM010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2400
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1314487"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(411..>2400)
                     /locus_tag="VI413_04480"
     CDS             complement(411..>2400)
                     /locus_tag="VI413_04480"
                     /inference="COORDINATES: protein motif:HMM:NF019136.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="triple tyrosine motif-containing protein"
                     /protein_id="HEY6913912.1"
                     /translation="WLGLDKGIDYVLINSPIYDLFGNSQLFGAGYTSLIKGNLLYLGT
                     NQGLYVTSYPLSNAPTPLSLKLMPRMQGQVWSLTSIDNTIFCGTDHGAFIINENNVEP
                     IPGVIGTWGFRELRTKPGFIIGCSYQGFFILKKDGNKWKFSNFIKGFSDSGGMFEEDN
                     EGFIWFSHWIKGISRLKLSSDLSRFDKVELFGTSKGFPSNRDNTLYRIKNKIIFSTQN
                     GFYEFNSRTNRVERSKEFEAIFGVPSHSMRLSETPQGDIWCTSFSYVGRAVKQANNKY
                     KIDSLSFCSLKNKLISGFEHFNFINSTNIIVTTEDGFSWIDASKINKEKSNFKISVRN
                     VFLTSENDSVVGGYQLINKRNQTPEFDFNHNSLRFEYVAPEYRNEAAVTYSYFLEGND
                     TKWSVYSSVNTKEYTKLKKGTYTFRVRAKSLLESNVVETSYQFVIQPPWYESKVAYAI
                     YVILLAILVYALLHFIKIRSEKGARDMEAQKELELQEQEKRFEEDAKEKRKEIIELKN
                     QRLQYDLRHKSQELASSTMNLIRKNEILLDISQNLNKVAGEINEKSDNKAVLRQISKM
                     QDEIKKNIEHDNNWKRFAENFDLVYENYLKRLSEKFPNLTISDKKLCAYLKMDLSSKD
                     IAPLLNMSFRSVEMSRYRLRKKMELERDVNLSDFLQNF"
BASE COUNT          673 a          470 c          458 g          799 t
ORIGIN      
        1 taattcttga actgtcataa taaatttatt ttaattgtat tttgtacatt tatcgtttcg
       61 ggaacacaaa aatagcttaa aacagaacta gtatgaagta ataaaaatat gttttaaagc
      121 atgttttggt ccatgtttta gtttattaaa ttattacaat aagtagtaac aaatagccaa
      181 tcttgaatta aatgaaatgt gtgattgtaa tttgcagttt tacagctctt tatgacaata
      241 acaatggagg tggaaacaac ttgcgtttcc acctccattg aaacaatatt caagttcaga
      301 aaaatgagaa taagcgtagt ggttgttttg tgcttaaaat tgatatgaaa ttaccatttt
      361 tacagaatta aaattgattt tttcataagt ttgggtatta ttttcgctgg ttagaagttt
      421 tgcaggaaat cagacaaatt cacatcgcgt tccaactcca ttttcttacg caggcggtaa
      481 cggctcattt ccacgcttcg gaacgacatg ttgagcagcg gtgcaatatc tttcgacgaa
      541 agatccattt tcaggtaagc gcatagtttt ttatcgctga tggtcagatt cggaaatttc
      601 tcactcaacc gtttcaaata gttttcatag actaaatcaa aattctcagc gaaacgtttc
      661 cagttgttgt catgctctat gtttttcttg atttcatcct gcattttgga tatctggcgc
      721 aaaacagctt tgttgtccga cttttcattt atttctcctg caaccttgtt cagattttgt
      781 gaaatatcca gtaaaatctc atttttacgg attaaattca tcgttgaact cgccagttct
      841 tgtgatttgt ggcgaagatc gtattgcaat cgctgatttt tcaattcgat gatttcctta
      901 cgcttttctt tagcatcttc ttcgaaccgt ttttcctgct cctgtaattc cagttccttt
      961 tgtgcttcca tatctcgggc gcctttttca gaacgtatct ttataaagtg taacagtgcg
     1021 taaaccagaa ttgccagcaa tataacgtaa attgcgtagg caaccttgct ttcgtaccag
     1081 ggtggctgaa ttacaaactg gtagcttgtc tctacaacat tcgattctaa caggcttttt
     1141 gcccgaaccc ggaatgtata agttcctttt tttagtttgg tatattcctt cgtattcaca
     1201 cttgaatata ccgaccattt tgtgtcgttt ccttcgagga aatagctgta cgtaactgca
     1261 gcttcgttgc ggtattcagg ggctacatat tcaaaccgca gggagttgtg attgaaatcg
     1321 aactccggag tctggtttct tttattgata agctgataac cacctaccac cgagtcattt
     1381 tcgctggtaa gaaacacgtt acgaacagag attttgaagt tgctcttttc tttgttgatc
     1441 ttgctggcat caatccacga gaaaccatct tcggtggtga ctataatatt agtgctgttg
     1501 ataaagttga aatgttcgaa accacttatc agtttatttt ttaaagaaca aaatgacagt
     1561 gaatcaatct tatatttatt gttcgcttgt ttcacagccc ggcccacata ggaaaatgaa
     1621 gtacaccaga tatcgccctg gggcgtttcg ctcagacgca tggaatgcga aggtacgccg
     1681 aaaatagcct caaactcttt tgatctttcg acgcggtttg tgcgggaatt gaattcgtaa
     1741 aatccgtttt gggtagaaaa aatgattttg tttttgatgc ggtagagtgt gttatcgcgg
     1801 tttgaaggaa agcctttcga tgttccaaac aattcaactt tgtcgaaccg gctcaaatcg
     1861 ctactaagct ttaggcggga gattcctttt atccaatgcg aaaaccagat gaaaccttca
     1921 ttgtcttctt caaacatccc tccggaatcg ctaaatcctt tgatgaaatt ggagaatttc
     1981 catttgtttc catctttttt caggatgaaa aatccctggt acgaacaacc gataataaat
     2041 cccggtttgg tccgtagttc cctgaatccc cacgttccaa tcacaccggg tatgggctct
     2101 acattgtttt cattgataat aaatgccccg tggtcggttc cgcagaaaat ggtattatca
     2161 atagaagtca ggctccatac ctgcccctgc atgcggggca ttaactttaa tgacagggga
     2221 gttggggcgt tcgaaagcgg ataagaagtt acgtacaaac cctgattcgt tccgagatac
     2281 aataagttgc ccttaatgag cgaagtataa ccagccccaa acaattggct attgccaaat
     2341 aaatcgtaaa tgggtgaatt aataagcaca taatcaattc ctttgtccag accaagccat
//
LOCUS       DATDNM010000264         2613 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1208403, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000264 DATDNM010000000
VERSION     DATDNM010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1208403"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1431)
                     /locus_tag="VI413_04485"
     CDS             complement(<1..1431)
                     /locus_tag="VI413_04485"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002558616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HEY6913913.1"
                     /translation="MLFNSLNFAIFLPIVFMLYWYATNKNLKLQNMLLLASSFFFYAC
                     WNWHFLFLLSISIVLVYYPGKFMSASKSRKVRKRWLWLSIVFSLGFLGIFKYYNFFIE
                     SLAGMLLGLGLQTNPLSLNLILPVGISFYTFHGLSYIIDLYKGRIEEEKDFVNYAVFV
                     SFFPLLIAGPIERATHLLPQINTPRTFDYNKAVDGLRQIVWGLFKKIVIADGCAESAD
                     MIFNNSASYSGSTLLLGALFFTIQIYCDFSGYSDIALGVARLFGIELLRNFAFPYFSR
                     DIAEFWRRWHISLTTWFRDYLYIPLGGSRGGTWMKIRNTFIIFLVSGFWHGANWTFIA
                     WGALNAIYFLPLMLTHNNRNNIEIVAQGRNIPTLRELLSMLITFGITVFAWIFFRADS
                     IGHAFSYIAEVFSSSLLTIPHYTGMSRALPIVCMTGIFLIVEWFGREQQYAIANLGIR
                     WKRPLRYALYYAIIIAIFWFSGKEQQF"
     gene            complement(1923..>2613)
                     /locus_tag="VI413_04490"
     CDS             complement(1923..>2613)
                     /locus_tag="VI413_04490"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="head GIN domain-containing protein"
                     /protein_id="HEY6913914.1"
                     /translation="TFIHLHQRNGQPFSITWSGKDSPETDEVRTAEPFSAIEVSGNIE
                     LTLDSDTTKQITVTTQQDYLPNVITKVENGVLHIYAEKIFLNRTVKVHVPADSVRSIK
                     ATGACKVTTASSMATPEFDLRLTGACQADMDLQVAGLCKIDLTGASQANLSGTCSELK
                     VDGTGACQLEAHDLISKTADVRVSGASQAEVYASERLDATATGASQVDCKGSPKNVNK
                     NTHIGSEINVE"
BASE COUNT          818 a          554 c          490 g          751 t
ORIGIN      
        1 aaattgttgt tctttgccac taaaccaaaa gatagcaatg ataattgcat agtacaatgc
       61 gtaacgaagt ggtcgtttcc atcttatccc taaatttgca attgcatatt gttgttctct
      121 tccaaaccat tcaacgatta aaaatatacc tgtcatacaa acaattggca gcgccctcga
      181 catacctgta taatgtggaa ttgtcaaaag tgaacttgaa aacacttcag caatatagct
      241 aaacgcatga ccgatgctat cagccctgaa aaatatccag gcaaaaacag ttattccaaa
      301 agtgattagc atagacaaga gctctcttaa agttgggata ttcctacctt gtgccacaat
      361 ttcaatatta ttcctattat tgtgggttag catgagtggc aaaaaataga tcgcatttaa
      421 cgccccccat gctataaaag tccaattggc accatgccaa aaaccactta caagaaatat
      481 gataaaagtg tttctgattt tcatccaggt accgccacga cttccgccta agggtatata
      541 tagataatcc cgaaaccagg ttgtcaaaga tatatgccag cgtctccaaa actcagctat
      601 atctcttgag aaatacggga aagcaaaatt gcgcaataat tcgatcccaa aaagtcgggc
      661 tacacccaat gcgatatcgg aatatcctga aaaatcgcaa tagatttgaa tggtaaaaaa
      721 caatgcacct agtagaagtg tgcttccgga atagcttgca gaattattaa aaatcatatc
      781 tgcagattct gcacaaccat ccgcaataac gattttctta aacaaacccc atacaatttg
      841 cctcaagcca tccacagcct tattgtaatc gaatgttctt ggtgtattga tttgtggcaa
      901 caagtgggta gccctttcaa tcggcccggc tattagcaag gggaaaaaac taacaaaaac
      961 tgcataattg acaaagtctt tctcttcttc aattctgcct ttgtatagat cgatgatgta
     1021 ggacaaacca tgaaacgtgt aaaatgaaat gccaaccggt aaaatgaggt taagtgacaa
     1081 aggattggtt tgtagtccta aacctaacaa catcccggct aaagattcta taaaaaaatt
     1141 atagtacttg aatatcccca aaaatcccag gctgaaaact atgcttaacc aaagccagcg
     1201 ttttcttact ttccggcttt ttgaagcact cataaatttg cccggataat agactaagac
     1261 aatggagatc gacagtaaaa ataagaaatg ccaattccaa caggcataaa aaaagaaact
     1321 tgatgctaat aacagcatgt tttgcagctt taaattctta tttgtcgcat accaataaag
     1381 catgaaaaca attggcaaga atatcgcgaa gttcaatgaa ttaaaaagca tatagtccgt
     1441 ttgttttgta attttaatac tgtataccga ctcttttgca ttggtggaaa caccggaata
     1501 taagcacgca attgcttcaa tttatggatc actgatatga tttctaccgg ttggaaaggt
     1561 gtgtttctta aatttcaaaa ttacacattc tttatcatac tttaatcaaa caacagttaa
     1621 aacaaaactt cttgaattgg ttttcaatca ttttgggcta ataatggctt tattttctca
     1681 gacagttgga tatgtgagat aaataattgt caaataccca cattaacgta attgcattcg
     1741 gcattcggca ttcggcattc ggacaggtcg cgacctgtcc ctacacagcg ttttgcaaaa
     1801 ttgaattcat tgtctatgtt acaccgaaca tgaattatat caagatatag aaaacccgct
     1861 ttatcaaaca ataaagcggg ttttattttt agatcactaa atatagaaat caacaaatca
     1921 tcttattcaa catttatttc cgacccgata tgggtgtttt tgtttacgtt tttaggacta
     1981 cccttgcagt cgacctggct ggcaccggtg gccgtggcgt cgaggcgttc ggaagcatac
     2041 acttcggcct gcgatgctcc gctaaccctt acgtcggcag ttttggaaat caggtcatgc
     2101 gcttccagtt ggcaggcgcc cgtaccatcc actttcaact cgctgcaggt tccgctcagg
     2161 ttggcttgcg acgctccggt caaatcaatc ttgcataagc cggcaacctg caggtccata
     2221 tcggcctggc acgctcccgt cagtctcaga tcaaattcgg gcgttgccat gctcgaagct
     2281 gtcgtaactt tacaagctcc agtggccttg atgctccgaa cggaatcggc aggaacatga
     2341 actttgacgg tgcggttcag aaaaatcttt tcggcataaa tgtgcagcac gccgttttcc
     2401 actttagtta ttacgtttgg caaataatct tgctgggtag taacggttat ttgtttggta
     2461 gtgtcgctgt ccaatgtcag ctcaatatta cccgaaacct caatggcact gaatggttcg
     2521 gctgtgcgta cttcatcagt ttcgggagaa tctttacccg accatgtaat ggaaaacggt
     2581 tgtccgttgc gttgatgtaa atgtataaaa gta
//
LOCUS       DATDNM010000265         2651 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_780507, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000265 DATDNM010000000
VERSION     DATDNM010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2651
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_780507"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..405
                     /locus_tag="VI413_04495"
     CDS             <1..405
                     /locus_tag="VI413_04495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEY6913915.1"
                     /translation="YISPHLNRCDSMKKKIHYCKVEKKYFPIVFEAMWRVFDSGTASA
                     SKIPGIDMCGKTGTADNSQGKPHSIFVGFAPRVHPKIAIAVVVENAGYGSMFAAPIFS
                     LMVEQYLLGKIERTELLERTKNTVTNINVQER"
     gene            389..1855
                     /gene="rodA"
                     /locus_tag="VI413_04500"
     CDS             389..1855
                     /gene="rodA"
                     /locus_tag="VI413_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEY6913916.1"
                     /translation="MSKNVSIKYALDWTTVSYYVVMVIMGWISIYGASYNFDQASVFD
                     FSQRAGSQFIWILTAFALGGMLLLVDSRMYDFFAYFIYAAAILLLIFTIIAPSSIVPD
                     IKGSRSWIVLGPVRFQPAELAKIATALALSKFMSSYNYKLKTWRDLIPLAIFIMVPFG
                     LIILQHETGSALVFIAFLLMLYREGMNGIVLLLGTFAVVLFVVVIRFSNIPIQVDRGT
                     LGFVVAMFIILLIQVCYAVFFGRNRKEASILMLGTLAVAIASYVINIWFHVSYNYISI
                     AVIVGSCIYWVFVELINRYKKYWFLVLFSIGSVLFCFSADYLFEKVLEPHQRIRIKVL
                     LNMEDDPTGAGYNVNQSKIAIGSGGFWGKGFLNGTQTKLKYVPEQDTDFIFCTVGEEH
                     GFWGSTLVLFVYWLFLMRLLRIAERQRETFNRIYAYCVASIFFFHLTINVGMVLGIMP
                     VIGIPLPFFSYGGSSLWGFTILLFILLRLDAARLERMR"
     gene            2073..>2651
                     /locus_tag="VI413_04505"
     CDS             2073..>2651
                     /locus_tag="VI413_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913917.1"
                     /translation="MKKITFLGIIMLLSLFTTPAKAEINFDLTTVSGGTITLDYAALT
                     AEKNKTQGERWISVVNFAASGTAGKCGTATATFDIKLGRTITFYLAKCDKMTISANIA
                     LTRGLTYTINDGTSTTLDGTGACKDYEVAVNSETPVKIIVQGLNSSSAWTSFFTFSYI
                     AKTPTISTFKINGTPAVIDQAAKTITLQMPYGT"
BASE COUNT          719 a          546 c          529 g          857 t
ORIGIN      
        1 tatattagtc cacacctgaa ccggtgcgat tctatgaaaa agaaaatcca ttattgcaaa
       61 gtggaaaaaa aatattttcc aattgtcttt gaagcaatgt ggcgcgtgtt tgattcaggt
      121 acagccagtg catcgaaaat cccgggaatt gacatgtgtg gaaaaaccgg tacggcagac
      181 aatagccaag gtaaacctca ctctattttt gttggatttg cgccaagggt tcatcctaaa
      241 attgctattg ccgtcgtagt tgaaaatgcc ggatacggtt caatgtttgc tgctcctatc
      301 ttcagtttaa tggtagaaca atatctcttg ggcaagattg aacgaactga gttactcgaa
      361 cgaacaaaaa atacagtcac aaacatcaat gtccaagaac gttagtatta aatatgcact
      421 cgactggaca accgtatctt attacgttgt catggttatc atgggttgga taagcatcta
      481 cggtgcaagt tacaactttg atcaggcgag tgttttcgat ttcagccagc gggcaggttc
      541 ccagtttatc tggattctga ctgcatttgc attaggcggc atgttgttgc ttgtcgattc
      601 acgcatgtat gatttctttg cttattttat atatgcagca gccattttac tgcttatttt
      661 caccattata gctccaagct caatagtccc cgatattaaa gggtcccgct cctggatcgt
      721 tctcgggccc gtccgttttc aaccggctga actggcaaaa atagcaaccg ccctggctct
      781 ttccaagttt atgagttcat ataattacaa actcaaaaca tggcgcgacc tgattccgtt
      841 agccatattt atcatggttc ctttcggact tatcatactt cagcacgaaa ccggttcggc
      901 tcttgttttt attgcatttc tgcttatgct ttaccgcgag ggaatgaatg gaattgttct
      961 cctgttggga acatttgctg ttgttctttt tgtggtcgta atccggttca gcaatattcc
     1021 tattcaggtt gaccgtggaa cgctgggctt tgtggtcgct atgtttataa ttctgcttat
     1081 acaggtttgt tatgccgttt tctttggccg aaaccgtaaa gaagcctcta ttctgatgtt
     1141 ggggacatta gctgttgcta tcgcttcata cgttataaac atctggtttc atgtcagcta
     1201 caactatatt tccatagctg taatcgttgg gtcctgcatt tactgggtat ttgttgaact
     1261 tattaaccgc tataaaaaat actggtttct ggtactgttt tcaattggct cagtactttt
     1321 ttgtttttcg gcagattatc ttttcgaaaa agtccttgaa cctcaccaac ggatccgtat
     1381 caaagtgttg ttgaatatgg aagacgaccc aaccggagca ggatacaatg taaaccaatc
     1441 gaaaattgct attggctcag gtggattttg gggcaaagga ttcctgaacg gaacgcagac
     1501 caaactgaaa tatgtgcccg aacaggatac cgatttcatt ttctgcactg tgggcgaaga
     1561 acacggtttt tggggatcaa ccctggtact ttttgtatat tggctctttt taatgcggct
     1621 tttacgcatt gcagaacgac agcgtgagac tttcaaccgg atttatgcat actgcgtggc
     1681 cagtatattc tttttccatc tcactatcaa tgttggcatg gtactcggta ttatgcccgt
     1741 aatcggtatt ccgttgccgt ttttcagcta cggtgggtcc tcgctctggg gttttaccat
     1801 tttgctgttt attttgctca gactggacgc agccaggtta gaacggatgc gataacacat
     1861 tctcatttta aaggcccgat tactcgggtc ttttttttgc ccaattgtat tcaatcttct
     1921 tgcactaact cttccatttt atatcaaaaa gtagataata acagtcaaaa cgctcatttt
     1981 tttgatatta gtaaccatct atctttggcg cagagattat tccagctaat ttctataacc
     2041 ttttattaac aatctactaa tcatttatta ccatgaaaaa aattactttt ttagggataa
     2101 ttatgctatt atctcttttt actactccag cgaaagctga aattaacttc gatctaacca
     2161 ccgttagtgg aggcactatt accctcgatt atgcagcttt aactgctgaa aaaaacaaga
     2221 cacaaggcga aagatggatt tcagtggtaa actttgcggc aagtgggact gcaggaaaat
     2281 gtggaactgc gacagcaact tttgatatca aattaggccg tacaattaca ttctatcttg
     2341 cgaagtgcga taaaatgact atttcagcta atattgcttt aacacgtggg ttaacttaca
     2401 ctataaacga tggcacatca acaacgctgg acggaacagg tgcctgcaaa gattatgaag
     2461 tagctgttaa ctctgaaaca ccggtaaaaa ttattgttca gggactcaat agcagtagtg
     2521 catggacatc attctttact ttttcttata tcgccaaaac tccaactatt tcgactttta
     2581 aaatcaatgg tactcctgca gtaattgacc aagctgccaa aactatcacc ttacaaatgc
     2641 cttacggaac a
//
LOCUS       DATDNM010000266         5908 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_994356, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000266 DATDNM010000000
VERSION     DATDNM010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5908
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_994356"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(453..1118)
                     /locus_tag="VI413_04510"
     CDS             complement(453..1118)
                     /locus_tag="VI413_04510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913918.1"
                     /translation="MKATKITHRNEARIRVDFPYNQEVVSKLRQISDTRWSKTMGAWH
                     VPYTKEAFVQLKTLFPELEYETTATVVANSNIKAIHDLSLPDSSRLNIQATESKPIEK
                     QPKNEVRFASNSIEIEITTRQISIKIPKNETDIQFIRSFKYARWNSAQFCWTMPNFGN
                     NVEKLKGYFGERDVEFIEHTGEKLVIDVEHPSFTKNEMLVVNHSGRKLKVYFGYQINN
                     SHC"
     gene            complement(1335..2105)
                     /locus_tag="VI413_04515"
     CDS             complement(1335..2105)
                     /locus_tag="VI413_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913919.1"
                     /translation="MRNTFIKVRYDRMQNAELKTLYQDIMCYLLECDADMPDLSMAFT
                     RFCNQKEMLQNLNAKQRKLPQTEQIVELRKETDNLVSAMLLNMKALKRAAFDDQVEEI
                     KISYDWTNNLLKNFVHEGRFTKNSKLKILLNEINKKEEIYAAFEKLGLLRYSQKMAEI
                     RQQIADCTEKNNVEIRQRPATGITIPSKEHIIGELRLLLQTIEITAITHPETDYKPLI
                     NYINLLLTEARTQLRNLATRRKTAKAKAEQKQQADEAE"
     gene            3505..4842
                     /locus_tag="VI413_04520"
     CDS             3505..4842
                     /locus_tag="VI413_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010993399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HEY6913920.1"
                     /translation="MKTEQVLDNLKWRFPNEPEYYQAVEEVLLSIEDIYNAHPEFEKY
                     NIIERICIPDRIFSFRVTWVDDQGNVKTNMAYRVQHNNAIGPYKGGIRFHESVCPSIL
                     KFLAFEQTFKNALTTLPMGGAKGGSDFSPQGRSDGEVMRFCQAYILELWRHIGPETDV
                     PAGDIGVGGREVAYMYGMYRKLAQENTGTFTGKGLEFGGSLIRPEATGYGNIYFLMNM
                     LKRKGITDLKGQVVAISGAGNVATYTAEKVIELGGKVVTMSDSNGYIYDPDGIDTEKL
                     AYIFDLKNVRRGRIKEYAEKYGCKYVEGQQPWSEKCTIALPSATQNEITGEDAEMLVK
                     NGCMAVSEGANMPSTSEAIEVFLKNKILFAPGKAANAGGVSVSGLEMSQNAMKLSWQK
                     EEVDNRLQQIMKSIHESCVKYGTEPDGFVNYVKGANIAGFMKVAKAMMAQGVL"
     gene            complement(5002..5883)
                     /locus_tag="VI413_04525"
     CDS             complement(5002..5883)
                     /locus_tag="VI413_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6913921.1"
                     /translation="MFQSHIGEFAGLGVSVCWTMSALFFEKAGHKIGSLSVNFIRLLF
                     AIGFLGITTFFSRGLFFPTDATGYQWFWLGLSGFIGFFLGDMLLFQSYMVIGSRTAAL
                     IMSLAPMLTAVIGWFFLDEILSAKNIIAIVVSVSGIILAISNRKMKLDIPFKGFLLAF
                     GGALGQAVGLILSKKGMGHYDPVAATQIRALFGLVSFGILITAIGRWKKLGQAFTHTS
                     AMKSVTVGAFFGPFVGVALGLFAIQQTKTGIASTLMGLVPIFIIVPSSIMFKEKIRPQ
                     QVIGAIVSIAGATLFFL"
BASE COUNT         1686 a         1115 c         1223 g         1884 t
ORIGIN      
        1 ttaaatttaa tagctgcatc attttgtaca tgaagtttct tattccgttt ccgttttttc
       61 cattttttct tatggcgttt ttcttcgtat cttgtacgaa tgtctaaata cgttttccat
      121 ttgtatttcg ttttgtgtcc tttcatttgt cagttttaaa gttgaaggat atttatgatt
      181 agtttatttc ttcgttaagg ttatgtatgc gcaaaatgct aaatatcttt tttttaaggt
      241 tgccgctaac attattgtat gagcaccttg gtgcttatat atcaacttta tctgagagtt
      301 cttattttta taatcgtatg gaaaacagaa cattgacaaa tatacagtta tttaacatag
      361 gtactcatac aggattttaa taatccattt ttatctgacg aatcggacac ttttttatta
      421 attaatgtcc aaatgtaaca ataatatttt aattagcaat gtgaattgtt tatttgataa
      481 ccgaaataca ctttcagttt ccgtcccgaa tggtttacaa ccaacatttc attctttgta
      541 aacgatggat gttctacatc aatcacaagt ttctcgccgg tatgttctat aaattctaca
      601 tcacgctctc caaaatatcc tttcaatttc tcaacattat tcccaaagtt tggcattgtc
      661 cagcaaaact gagcactgtt ccaccgggca tatttgaacg accgtataaa ttgaatgtca
      721 gtttcattct taggtatctt aatacttatt tgacgtgttg taatttcaat ttcaatgctg
      781 ttggatgcaa atcgaacttc attttttggt tgtttttcga ttggtttgct ttctgttgct
      841 tgtatattta acctggacga atcaggtaaa gacaggtcat gaatagcttt tatgttgcta
      901 tttgccacta cagttgctgt tgtttcatat tccaattcag gaaacaaggt tttcaattgt
      961 acaaaagcct ctttggtgta aggcacgtgc catgcaccca tggttttgct ccaacgggta
     1021 tcggatattt gccgtagttt cgaaaccacc tcctgattat acggaaaatc aacacggata
     1081 cgtgcttcat tgcgatgtgt gattttcgta gctttcataa ctgtatctta atttcagccc
     1141 caaagataaa aactattttt cacattaaca gccattcttt taattaaaat gagatttttt
     1201 tttagtaaac ttgtttgccc ggtcatgtaa tgggtagata tcctgcttgt ggatacaaaa
     1261 aatgcaacta tccgggaatt cagataattg catttcgtag gggcaggagg gtggttcaga
     1321 attgtatcgt tgttttattc ggcctcatca gcctgctgtt tttgttcggc tttggctttt
     1381 gccgtttttc ggcgggtggc caggttgcgc aactgcgtgc gcgcttcggt aagcaatagg
     1441 ttgatatagt ttatcagtgg tttgtaatct gtttcgggat gcgttatggc tgtaatttct
     1501 atcgtttgca gcaacaggcg aagttcgccg ataatatgtt ctttggacgg gattgtaatt
     1561 cctgttgcag gtcgttgtct tatttccaca ttgttctttt cagtgcagtc tgctatctgt
     1621 tgccttattt ctgccatctt ttgcgaataa cgcagtaacc ccagtttctc gaatgcggcg
     1681 tatatttctt cttttttgtt tatttcattc aatagaatct tcagtttcga attttttgta
     1741 aaccgtcctt cgtgtacaaa gtttttaagt agattattcg tccagtcgta actgattttt
     1801 atttcctcca cctgatcatc gaatgcggca cgtttcagcg ctttcatgtt caacagcatg
     1861 gcgctcacaa ggttgtctgt ttctttgcgc agttccacta tttgctctgt ttgcgggagc
     1921 ttgcgttgtt ttgcgttcag gttctgcaac atttctttct ggttgcagaa acgtgtaaaa
     1981 gccatgctca aatccggcat gtcggcatcg cactccagta aataacacat tatatcctgg
     2041 tacaatgttt tcaattcggc attttgcatt cggtcgtacc gaactttaat aaatgtattt
     2101 ctcattcagt aataaactta taatggtttc tgttttttac attgcaattg tactgtttcc
     2161 gtttcagcat cctgccggtg catgcttcat tgggatattt cagaaaacgg tttctctcaa
     2221 aatatccttt tttaaccggt tcccggtttt aatttctatc gaagttagcc ccaaaaggtt
     2281 gtttcaaaat ttattttcta ttctggacgg gataaaaatg caatatccaa ctatttttca
     2341 taccggcgct gcattacatg agtagtatta caaaaataat actatctgtg taatgttgca
     2401 ttgatggttc gacaaaagta atggaaataa tgtagaatta catggaggga ttgagaaaaa
     2461 taatcatatt gatgtatgat tacatcatag gtgtgataaa aataataata ttgatgtatg
     2521 cctgcatcgc taataatata aaaatgaaag tataggttta acccgttaat tatagaaatt
     2581 gacattgatt aatcaggtta gcgtatatcg cacatgcagt ggcatttggc agattcacca
     2641 tacgtttata gtgatagtgc aaatataaat aatttatgtt gtttttgcaa ataatgagta
     2701 gtgtttttgt ttttatcctc aaagcaatct aattgaagtt taattcatta atcttacccg
     2761 tagtgtttta ataagaaaag aacagaacgt gtattttaag gaactaagcg gatgaataca
     2821 gattttaaat tgacttcgtc aatagattta agatcaaaat gcttacattt tttaatccgt
     2881 attttttcta tccgctgtat cggcgtaaat ctgcgttcta ttctttacct gttttttaag
     2941 agacaagaag taagtctggg tttggggtgg aagtcctgat aaaacagaat aatttttttt
     3001 taacaatgac tgcaggttaa tctaactcgt agtgtattta atagatattt tcaataaaga
     3061 tatgaaagat atagggttgt acacagcttg caaatgagtg acctcgttcg gtgagccgaa
     3121 aaacaagtaa ggaaccaacg gtcagcgtta gctaaagcga aaaaataccc actgtttgac
     3181 gaccgcagga aggagtttgg ggattttcgc tttccgagcg ccagtttttc gagtgaggcg
     3241 ggcgaagtct tgactttttt tggttacttt ttggcgtcaa ggcaaaaaag taactggggt
     3301 ttggggtacg ctcggctttg ccgcttggct tgccaagaaa ccccaatagg aaaaatagtc
     3361 tgtattatta atgcactaca ggttaatcta atataattgt aatgtaacct gttggaaata
     3421 acgcccgtaa aaacaatcat gttgccttgt ttgttttatc cttactcctt atgtgttctt
     3481 tgtaatccta taaaatttaa tattatgaag accgaacaag ttcttgataa tctgaaatgg
     3541 cgttttccga atgaaccgga atattaccag gccgtagaag aagtgttact ttctattgaa
     3601 gacatttaca atgcgcatcc cgaatttgag aagtataata ttatcgaacg tatttgcatt
     3661 ccggaccgta tcttttcgtt ccgcgtaacg tgggtggacg atcaggggaa tgtgaaaacg
     3721 aacatggctt accgggtgca acataacaat gccattggtc catacaaagg tggaatccgt
     3781 ttccacgaat cggtttgccc ttccattctg aagtttctgg cttttgaaca aacatttaaa
     3841 aatgcactta caacactgcc aatgggtggt gccaagggtg gatccgattt tagtccgcaa
     3901 ggtcggtcgg atggcgaagt tatgcgcttc tgccaggctt atatcctgga actctggcgc
     3961 catattggtc ctgaaaccga tgttccggct ggcgatatag gtgttggggg ccgcgaagtg
     4021 gcttatatgt atggcatgta ccgcaagctg gcacaggaaa atacaggaac atttacaggc
     4081 aagggactgg agtttggcgg ttcactcatt cgaccggaag caacgggtta cggtaatatc
     4141 tatttcctga tgaatatgct caagcgaaaa ggaatcaccg atttgaaagg tcaggtggtg
     4201 gccatttcgg gcgcgggaaa cgtggcaaca tatacggccg agaaagtaat tgagttggga
     4261 ggaaaggtag tcaccatgtc ggacagcaac gggtatattt acgatccgga tggaattgac
     4321 accgaaaaac tggcttatat cttcgatctg aaaaacgtcc gtcgtggacg aataaaagaa
     4381 tatgccgaaa agtacggttg caaatatgtg gaaggccagc agccgtggtc agaaaaatgt
     4441 accatcgcat taccttcggc tacccaaaac gaaattacag gtgaggatgc cgaaatgttg
     4501 gtgaaaaatg gttgcatggc tgtatccgaa ggtgccaata tgccatcgac aagcgaagcc
     4561 attgaggtgt ttctgaagaa taagattctg tttgctccgg gtaaagcagc caatgccggt
     4621 ggtgtttcgg tttccggtct ggaaatgtcg caaaatgcca tgaagttgag ctggcaaaaa
     4681 gaggaagtgg acaaccgttt gcaacagatt atgaagagca ttcatgaatc gtgcgtaaaa
     4741 tatggaaccg aacccgatgg ttttgtcaac tacgtaaaag gtgccaacat tgccggattt
     4801 atgaaagtgg cgaaagccat gatggcgcag ggagtgcttt gattaatcaa gaatcaagaa
     4861 tcaagaatca agaatcaaga atcaagagcc aagaatcaag agccaagaac aggattttta
     4921 atatcggaag tttcggcctt ttaacaatct aaagtctaaa atcttggctc ttggctctaa
     4981 tttggctctt gaatctaaat attataagaa aaacaacgtt gccccggcaa tactcacaat
     5041 agctccaatc acttgttgcg gcctgatttt ttctttaaac ataatggaag aaggtacgat
     5101 gatgaatatc ggcacaagtc ccataagcgt ggaagcaatt ccggttttgg tttgctgaat
     5161 ggcaaagagt cccaacgcca cacccacaaa cgggccaaag aaagcaccaa ccgtcactga
     5221 tttcatggca ctggtgtgtg taaatgcttg tcccagtttc ttccaccggc caatggcggt
     5281 tatcagtatt ccaaaactaa ctaatccaaa caatgcacgg atttgtgtgg ctgccaccgg
     5341 atcgtaatgt cccatgcctt ttttgcttag aatcaatccc actgcttgtc ccaatgcacc
     5401 gccaaacgcc agcaggaaac ctttaaaagg aatatccagt ttcattttgc ggttggaaat
     5461 agccagaata atgccgctta cgcttaccac tatggcaatt atgtttttgg cagaaagaat
     5521 ctcatcaaga aaaaaccaac cgataacagc cgtaagcata ggagcaaggc tcataatcaa
     5581 cgccgcagtc cgcgacccga taaccatgta cgattggaac agaagcatgt cgccgaggaa
     5641 gaagccgata aaacccgata atccaagcca aaaccactgg tagcctgtgg cgtcggtcgg
     5701 aaaaaataac ccgcgactga aaaatgtggt aattcccaaa aatccgatgg caaaaagcaa
     5761 ccggataaaa ttgactgata atgaacctat tttgtggcct gctttttcga aaaacaaggc
     5821 actcattgtc cagcaaaccg aaacacccag cccggcaaat tctcctatat gcgattgaaa
     5881 cactcttttt tttatttacg atttatac
//
LOCUS       DATDNM010000267         2872 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1848538, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000267 DATDNM010000000
VERSION     DATDNM010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2872
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1848538"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..570
                     /gene="tatC"
                     /locus_tag="VI413_04530"
     CDS             <1..570
                     /gene="tatC"
                     /locus_tag="VI413_04530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006841534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEY6913922.1"
                     /translation="FQVKIININLASQFLIHMSTSLWFGFILSFPFVIYQLFIFIRPA
                     LYSNERKNTGTAFFFGNLLFYLGISVGYIMVFPLTLRFLAGYQLSSYIENSVSLDSYI
                     DSFMLMCFIMGLVFELPLLSWFLSKLGILNRSFFNKFRKHAVVIMLIAAAVITPSGDP
                     FTLMVVFLPIYMLWEISALVVKKPAVTES"
     gene            634..1578
                     /locus_tag="VI413_04535"
     CDS             634..1578
                     /locus_tag="VI413_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005675936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF362 domain-containing protein"
                     /protein_id="HEY6913923.1"
                     /translation="MKRRDFFKSAAMVGLASVLKPNALNAAVGANASGSNMAVKSQPD
                     MVAVMGGEPGVMLARAFKELGGIGHYVKKGDKVVIKPNIGWDRKPELAANTNPELVGT
                     LVRMCKSAGASQVVVFDHTCHDWKKSYTNSGIEKAVTAAGGKMVPANDETYYREVELP
                     RGANLKKAKIHQALLDCDVWFNVPVLKHHGGSKNSIAMKNLMGIVWERGFFHSHDLHQ
                     CIADIATFHKAPALNIVDAYRIMKSNGPQGKSESDVVLLKSLIVSPDFVAADTASMKL
                     FSQVQPTDIKDVKYIGMAEKLRVGTQNLDKLNVKRIKL"
     gene            1675..>2872
                     /locus_tag="VI413_04540"
     CDS             1675..>2872
                     /locus_tag="VI413_04540"
                     /inference="COORDINATES: protein motif:HMM:NF024585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY6913924.1"
                     /translation="MKFLKNVRVVLSLLFFLPILAFFLDFSGKLPIALHALLHLQWVP
                     ALLSLNFVIIGTLLALSLLFGRVYCSSICPLGIFQDIIAWKSGLFRKKKKKKRFDYVK
                     PQNILRYSILAVTVIVFVFGSSFLVVLLDPYSTFGRIISQLIRPLVIWANNGFAALLN
                     GMGNYTLYKVEQIAFVPLAFIVSIVFFYKVAEMSVRHGRLYCNVICPVGTFLGLLSKV
                     SVFHISFEKSNCTHCGACEKQCKSECIDSKTMTVDDSRCVTCFNCLSACKKNGLKYDL
                     RYKKQQAAPVQVPVDKSRRTFLLTSGAVMTTMAFANTKNIVGKKDSILSRKPIMPPGA
                     KNIDHFNAHCTGCQLCVTKCPMQVLKPAALQYGISGITQPHLAFATHVFCTYECNICT
                     SVCPTGA"
BASE COUNT          777 a          502 c          627 g          966 t
ORIGIN      
        1 tttcaagtga agattatcaa cataaacctg gcatcgcagt ttctcattca catgtccact
       61 tcactttggt ttggatttat attgagtttc ccgtttgtca tttatcaatt atttattttt
      121 atcaggccgg ctctttacag caatgagaga aaaaataccg gcactgcctt tttctttggt
      181 aatttattgt tttaccttgg aatctcagtc gggtatatta tggtgtttcc gctaacgttg
      241 aggtttctgg ccggatatca gctcagttcg tatattgaaa acagcgtttc gctcgattcg
      301 tatatcgata gttttatgtt gatgtgtttt attatgggcc tggtttttga attgccgctt
      361 ttatcgtggt ttttatctaa attgggaatc cttaaccgga gctttttcaa taaattccgc
      421 aagcatgccg ttgttattat gctgattgcg gctgcagtaa ttaccccttc gggcgatccg
      481 tttacattga tggtggtatt tttaccaatc tatatgttgt gggaaataag tgctttagtt
      541 gtaaaaaaac ctgctgtgac agaaagttga taattttggt tttgttggtg gttttttaca
      601 taatgaattg aaatactgta aatttaaaat attatgaaac gtagagactt tttcaaatcg
      661 gctgcaatgg ttggtttggc ttctgtttta aaacccaacg cacttaatgc tgcagttggt
      721 gcaaatgcat cagggagtaa catggctgtt aagtcacaac ctgatatggt ggcagtaatg
      781 ggtggtgagc cgggtgtaat gctggcacgt gcgttcaaag aattaggcgg cattggtcat
      841 tatgtaaaaa aaggcgataa agtggtaatt aaacccaata taggctggga cagaaaaccg
      901 gaactcgcgg caaatacaaa tcccgaattg gtgggtacat tagtgcgtat gtgtaaaagt
      961 gcaggtgcct cgcaggttgt tgtgtttgac catacctgtc atgattggaa aaaaagctat
     1021 actaatagtg gcatagaaaa agccgtgacc gctgccggag gtaaaatggt tccggcaaat
     1081 gacgaaactt attaccgcga agttgaattg ccaagagggg ctaatctcaa gaaagcaaaa
     1141 attcatcagg ccttactcga ttgtgatgta tggtttaatg ttcctgtttt gaaacatcat
     1201 ggcggctcaa agaattcaat tgctatgaag aacttgatgg ggatagtgtg ggaaagaggg
     1261 ttctttcata gtcatgattt gcatcaatgc attgctgata ttgctacttt tcacaaagct
     1321 ccggctttga atattgttga tgcttaccgt attatgaaat caaatggacc tcagggtaaa
     1381 tcggaatcgg atgtagtatt gcttaagtcg ttgattgtgt cgcctgattt tgtagctgcc
     1441 gatactgctt ccatgaaatt gttctcgcaa gtgcaaccta ccgacataaa agatgtgaaa
     1501 tacattggaa tggctgagaa actgcgtgta ggcactcaaa atctggataa attgaacgta
     1561 aaacggatta aattataatt agttaataat cggtagaagg tagtttgtag ttctgttaat
     1621 ctcaactatt cactatcttt taccgattat ttattattaa ccacttattt gaaaatgaag
     1681 tttctaaaaa atgtccgtgt agtactttcg ctgctatttt ttcttccgat tcttgccttt
     1741 tttctggatt ttagtggtaa attaccaatt gctttgcatg cacttcttca tcttcagtgg
     1801 gtgcctgctt tactctcatt gaattttgta attattggga cactattggc tttaagccta
     1861 ttgtttggac gtgtttattg ttccagtatt tgtccattgg gcatttttca ggatattatt
     1921 gcgtggaaat cgggcttgtt tcggaaaaaa aagaagaaaa aacgttttga ttatgtcaag
     1981 ccacagaata ttcttcggta ttccatcttg gcagtaaccg taatagtttt tgttttcggc
     2041 agttcctttc tggtagtgtt gttggaccct tacagcactt ttggacgcat catctcacaa
     2101 cttatcagac cgttagttat ttgggctaat aatggttttg cagctctcct aaatggcatg
     2161 ggaaattata ccttatataa ggtagaacaa attgcttttg ttccattagc attcattgta
     2221 tcgatagtgt ttttctataa agtagccgaa atgtcagtaa ggcatggtcg cctgtattgc
     2281 aatgtcattt gtcctgtggg cacattttta ggacttttgt cgaaagtatc tgtgtttcat
     2341 atcagttttg aaaaatcaaa ttgtacacat tgcggagcct gcgaaaagca gtgtaagtcg
     2401 gaatgcattg acagtaaaac tatgacggtt gatgattcac gttgtgtgac ttgcttcaat
     2461 tgtctttcgg catgtaaaaa gaacggcctg aaatacgatc ttcgctacaa aaaacagcag
     2521 gcagcgccgg tgcaagttcc cgtggataaa agcaggcgga cttttttgct tacatccggt
     2581 gcggtaatga caactatggc ttttgccaat actaaaaata ttgttggaaa aaaggacagt
     2641 atcttgtcac gtaaaccgat tatgcctccc ggagctaaaa atattgacca tttcaatgcc
     2701 cattgcacag gctgtcaact ttgtgttacc aaatgtccta tgcaggtgct taaaccagca
     2761 gcgctgcaat atggtatttc gggcattaca cagcctcatt tggcctttgc cactcatgtg
     2821 ttctgcacct acgagtgtaa tatttgcact tcagtgtgcc caacaggtgc gt
//
LOCUS       DATDNM010000268         3484 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1848831, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000268 DATDNM010000000
VERSION     DATDNM010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3484
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1848831"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..313
                     /locus_tag="VI413_04545"
     CDS             <1..313
                     /locus_tag="VI413_04545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013264072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HEY6913925.1"
                     /translation="GVDYQIGQANNSLIYPGLGLGMLASEAKLLTDEMIGAAAHSLSG
                     LVDPGKPGAPVLPPFEFVADVSIKVAEAVAKKAQEQGLTESKETDMAKAVRDLKWYPE
                     Y"
     gene            328..1605
                     /locus_tag="VI413_04550"
     CDS             328..1605
                     /locus_tag="VI413_04550"
                     /inference="COORDINATES: protein motif:HMM:TIGR00783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate:cation symporter"
                     /protein_id="HEY6913926.1"
                     /translation="MKKLKETKISGISLPLYAFFVAVIIVVTLLGKLPLDMVGLTLLL
                     VTLGHLLYFIGEKLPIMNSYLGGGSVFTLIGATLLSFFHIVPSNVIGAVSNFMGGKFG
                     FLDFYIAALICGSILGMNRNLLVKASKKFIPIALITMVIGFFSVGLVGMLIGNGFADS
                     VMYISMPMMSGGMGAGITPLSQIYAAGLAHGNQAAIFSQLAPAVTFGNILAIIGALSI
                     AKVFNKSKYNGHGTLVAATKEELAKPKIKLDAQQIGTGMLFAFALLMAGDILNKFFPN
                     IHQYAFMIIIVFILKATNTVPKDLEESVVMFNQVIMTNLTHAVLAGIGLALIDLNTLA
                     SAFTWQFVVLCLTSVVVMGLASWFLARLFGLYPVETAIGAGMINNSMGGTGNIAVLSA
                     SDRMEMIAFAQMANRLCGAIVLIFGGILIRFFY"
     gene            1935..2834
                     /locus_tag="VI413_04555"
     CDS             1935..2834
                     /locus_tag="VI413_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010905618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6913927.1"
                     /translation="MNVKKQIFKGTLYAVVAGCMWGISGIFGQLFFRDYHGSPLWITS
                     TRLTIAGIILLAMSFSRDHKRFFDVWKSKKNMPTLFLYVFGGVFSVQYFYYVAIQLSN
                     SATATILQYTAPVFIMLYLLIFQRQVPKPKSVLFVILAMIGVFLLITDGNIKHLSISP
                     LALVTGLLAGVAVVIYSIIPRPLLDKYGALNMTGWGMMLAGIACNIFYPVWRIDFRIE
                     PLSIFYVLTISIVGTALAFLLLLRAFQLISPLVVSVATATEPLTSVFLSIPLFGLKLT
                     PLELLGIVMVIVSVILLSKSEQA"
     gene            2915..>3484
                     /locus_tag="VI413_04560"
     CDS             2915..>3484
                     /locus_tag="VI413_04560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913928.1"
                     /translation="MEEYYLPLEIRTDTWTLGGLWSLCLFLPSIEYFLVWQSIDFNVH
                     QFVLLSLVIGILFIYLFFFLLNHSRRKLAVIDQEGILLRLLFRNVKIEWRNIRGIYVR
                     SNTLYICEQNSFDSIHIEKKAWYKRLKFYQNYFEPGHNLKIVLSIQGSIISMDINELS
                     IICEEVWLKQSGFEQRDLFTENPFEKIDEA"
BASE COUNT         1009 a          549 c          633 g         1293 t
ORIGIN      
        1 aggtgttgat tatcaaattg gtcaagcaaa caactcactt atctacccag gtttgggctt
       61 agggatgttg gcatctgaag caaaactttt gaccgatgaa atgatcggtg cagctgcaca
      121 ttcattgagc ggtttagtag atccaggtaa accaggtgct cctgttcttc ctccatttga
      181 atttgttgct gatgtatcaa ttaaagttgc agaagcagtt gctaagaaag ctcaagaaca
      241 aggtcttact gaatctaaag aaactgatat ggctaaagca gttcgtgatc ttaaatggta
      301 tccagagtac taaggggaat atcttaaatg aaaaaactta aagaaacgaa aatatcggga
      361 attagtcttc ccttatatgc ctttttcgta gctgtcatca tagttgtaac actattagga
      421 aaacttccac ttgatatggt agggttaact ctcctacttg taacattagg tcacctatta
      481 tacttcatag gagaaaaact ccctattatg aattcatact taggtggggg atctgttttc
      541 actttaattg gtgctactct attatctttc ttccacattg ttccttcaaa tgttattgga
      601 gcagtttcca attttatggg agggaaattt ggatttcttg atttttatat agctgcactt
      661 atctgtggat ctattttagg aatgaacaga aatcttttgg ttaaagcttc caagaaattt
      721 attccgattg ctttaatcac tatggttatt ggtttcttct cagtaggtct tgtaggaatg
      781 cttattggta atggatttgc tgattctgta atgtatattt ctatgccaat gatgtcaggt
      841 ggtatgggag ccggaattac tccactctct caaatctatg cagccggatt ggctcatgga
      901 aaccaagcag ctatcttctc tcaacttgct ccagcagtta cttttggtaa tattcttgcg
      961 attattggtg ccttatctat cgctaaagta ttcaacaaat ctaaatataa tggacatggg
     1021 actcttgttg cagcaactaa agaagagttg gctaaaccta aaataaaatt agatgctcaa
     1081 caaatcggaa caggaatgct ctttgccttt gctcttttga tggctggtga catcttgaac
     1141 aaattcttcc ctaatattca tcaatatgca tttatgatta ttattgtatt tatcttgaaa
     1201 gcaacaaata ctgttcctaa agatttagaa gaatctgttg taatgtttaa ccaagtgatt
     1261 atgacaaacc ttactcatgc tgttttggca ggtattggtc ttgctttgat tgacttgaat
     1321 actcttgctt cagcatttac atggcaattt gttgtacttt gcttgacaag tgttgttgta
     1381 atgggacttg ctagttggtt cttggctcgc ctctttggcc tttatccagt cgaaactgcc
     1441 attggtgcag ggatgatcaa taattctatg ggtggaacag gtaacattgc tgtcttgtct
     1501 gcatcagata gaatggaaat gattgctttt gcacagatgg ctaatagact ctgtggtgca
     1561 attgttctta tcttcggtgg aattcttatc cgattctttt attaaaataa ccaaaaaaac
     1621 attttatata aaatgttttt ttttacaaaa ttaactgatt aaggaaataa aatagttggg
     1681 actatatcgc ctctcgcatg aagtggttca agtaaatata aaagtttgga gccatattga
     1741 tagtaaaata atgtaaagat ttaacaaatt ttctgctaat ctttaagata cacactcctt
     1801 gtttgataaa atattaagct attcttttaa ctccattatg tcttaaactc actaataatc
     1861 gagaacgtaa tatataaaag tataatgatg attgaaccct aatgaaccct cttgatgtat
     1921 ggtataatat aaaaatgaat gtaaaaaaac aaatttttaa aggcacactt tatgcagtag
     1981 ttgccggttg tatgtgggga atttctggca tttttggtca gctttttttc cgtgattatc
     2041 atggtagccc gctttggatt acatcaacac gtttaacgat tgctggtatt attttattgg
     2101 ccatgtcttt ttcgcgagac cataagcgtt tttttgatgt ctggaaatca aaaaagaata
     2161 tgccaaccct ctttttgtat gtttttggtg gggtattttc tgttcaatat ttttattatg
     2221 tggccattca actttcaaat agtgctacag cgacaatttt acaatataca gcacccgttt
     2281 ttattatgct ttatttactc atttttcaac gtcaagtccc aaaacccaaa tcggtcttat
     2341 tcgtcatttt agcaatgata ggtgtttttt tgttgattac ggacggaaat atcaaacatt
     2401 tatcaatcag tcccctagct cttgtaacag gccttctcgc tggtgtagct gttgttattt
     2461 attcaatcat ccctcggcca ttattagata aatatggcgc acttaatatg acaggttggg
     2521 gaatgatgct tgcggggatt gcctgtaata tcttctatcc agtttggcgt attgattttc
     2581 gaattgaacc cttgtcaatt ttttatgttt taacaatttc tattgttgga acagcactgg
     2641 cttttttgtt gcttttaagg gcctttcaat tgatttcacc gcttgttgtt tctgttgcaa
     2701 cagctactga accattgact tctgtttttt taagtattcc attatttggc ttgaaattaa
     2761 ccccacttga attactagga attgttatgg tcatcgtttc tgttattctt ctatcgaaat
     2821 cagaacaagc ttaaaagaaa cctaggggtt tcttttttta aaactgtttt attagaaaat
     2881 tctgatataa tatttttatt aggagagaat ttttatggaa gagtattatt taccattgga
     2941 aataagaact gacacttgga cattgggagg gttatggtca ctttgtctat ttttaccttc
     3001 tattgagtat tttttggttt ggcaatcaat agatttcaat gtgcaccaat ttgttttatt
     3061 gagtctggtt attggaatac tatttattta tcttttcttt tttttattaa atcattcacg
     3121 tcgcaaatta gctgtcattg atcaagaagg aattttatta cgattattat ttcgtaatgt
     3181 taagattgaa tggagaaata ttcggggaat ctatgttcgg tcaaatacct tgtatatttg
     3241 cgaacaaaat tcttttgatt ctattcatat tgaaaaaaaa gcttggtaca aacgtttaaa
     3301 attttatcaa aattattttg aaccaggtca caatttaaaa attgtattgt cgatacaggg
     3361 ctctatcata tctatggata ttaatgaact ttctattatt tgtgaagaag tatggttaaa
     3421 acagagtggt tttgaacaaa gggatttatt tacagaaaat ccttttgaaa aaattgatga
     3481 ggcc
//
LOCUS       DATDNM010000269         2142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_780950, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000269 DATDNM010000000
VERSION     DATDNM010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_780950"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VI413_04565"
     CDS             <1..268
                     /locus_tag="VI413_04565"
                     /inference="COORDINATES: protein motif:HMM:NF014711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="divergent PAP2 family protein"
                     /protein_id="HEY6913929.1"
                     /translation="LATATGLRQGFDSSLFAIATVLAFVVLYDAQGIRRQAGNQARII
                     NRMLQNVENAGIKVDKNLKELLGHTPIQVMGGTILGIIVALVMN"
     gene            408..2030
                     /locus_tag="VI413_04570"
     CDS             408..2030
                     /locus_tag="VI413_04570"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY6913930.1"
                     /translation="MNNIVFIKYKKGFCLALMIGLFLLINGIAISLTQVWNADHIIAL
                     LLGNILLIAAYFYFVGIYKLSKKLFDSKNKNETTDKSVSKIELLTDLSVTKYYRISFW
                     VVALLTFILPFLFMIHVPDSKHAWDYFVIFNSTTELHGQSFGLLPETASRLGYFLRYP
                     NNQFLGILFNQVFSPFAGSVELKMWVVTAVSALLTSLGVLAGTLSVKALSGKRHALLY
                     NVCALGFLPFYVYGAQLYSDTITLPFVSFSLLFFIYAIKSQKITQQVLWYFLATVLAV
                     IGYEFKPTVLIVLIAVLIFLGLNKKWKQLLLLLPMFAILFVGGHFMVKATIATEPAFS
                     QEANERRNLPMMHWIAMSWSPTNKTGGFNKKVRLYSESFPTYEAKKEADKQLFIDNLK
                     KMGPVGVVRQIGRKLAYTWLYGDLNSSFYTYHHENKFINRYFDYLSGTSFSLDGPGNI
                     TGWFMLKAVQTLYWIGLVVLLWRQIWRILISKRNWSNPWFIPALAFVGLSFFLILWET
                     NSRYLYQFAPVMIALASLGLIDKQFKKKKIKE"
BASE COUNT          657 a          316 c          409 g          760 t
ORIGIN      
        1 tttggcaacg gctactggat tgagacaagg atttgattca tcgctttttg ctattgctac
       61 tgttttagcc ttcgtcgttt tatatgatgc ccaaggtatt agaagacagg caggaaatca
      121 agccagaatt attaatcgaa tgttacaaaa tgtcgaaaat gccggaatca aagtagataa
      181 aaatttaaaa gaattattgg ggcatacacc aattcaagtg atgggtggaa caattttagg
      241 aataatagtt gctttagtaa tgaattaaga aaaaattctg ttgcaattag agtcgtaagc
      301 gttaactata gtgtagttta taaatgtgaa gtaaaaaatg agaaattatc atctaaaaat
      361 taaggttatt gtaagaaaca aaagccaagc tatggtaaaa tggtaatatg aataatatag
      421 tatttattaa gtataaaaaa ggattctgtc ttgccttaat gataggactc tttcttttaa
      481 ttaacgggat tgctatttct ttgacgcaag tgtggaacgc agatcacatc attgcgcttt
      541 tgttaggaaa tattctttta atagcagcct atttttattt tgttggaatt tataaattat
      601 caaaaaaact ttttgactca aagaataaaa atgaaactac tgacaagtct gtcagtaaaa
      661 ttgagttact gacagacttg tcagtaacaa aatattatcg aataagcttt tgggtagtag
      721 ctttgttaac ttttatcttg ccgtttcttt ttatgattca tgtgcctgat agtaagcatg
      781 cttgggacta tttcgttata tttaattcta caacagaact ccatggtcaa tcttttggac
      841 tattacctga aactgcttcg cgtttaggat attttcttcg ttatccaaat aatcaatttt
      901 tagggatttt atttaatcaa gttttctctc catttgcagg aagtgttgaa ctaaaaatgt
      961 gggttgtgac agcagtgtct gcactgttga caagtctcgg agttttagct ggaaccttaa
     1021 gtgttaaggc tttgagcggg aaaagacatg cgctcttata caatgtttgt gctctcgggt
     1081 tcttaccttt ttacgtttat ggtgcacaac tctatagtga tacgattaca cttccttttg
     1141 tatcctttag tttgttgttc tttatttatg ccattaaatc acaaaaaata actcaacaag
     1201 ttctatggta ttttttggca acagtgttgg cagttatagg ttatgaattt aagccaacag
     1261 tgttaattgt gcttattgct gttttgattt tccttggact taataaaaaa tggaaacaac
     1321 ttttgctttt actcccaatg tttgctattt tatttgttgg gggacatttc atggttaaag
     1381 caactattgc gaccgagcca gccttttctc aagaggctaa tgaacgtcgt aatcttccga
     1441 tgatgcactg gattgctatg tcttggtcgc caactaataa aacgggtgga ttcaataaga
     1501 aagtgagact ctattctgaa tctttcccaa cttatgaagc gaaaaaagag gctgataaac
     1561 aactcttcat agacaatctt aagaagatgg gacctgtcgg agttgtgcga caaattggac
     1621 gtaagttggc ctatacttgg ttatatggtg atttgaacag ttcgttttat acttatcatc
     1681 atgaaaataa atttattaat cgttactttg attatttatc aggaacctca ttttctttgg
     1741 atggccctgg taatataaca ggttggttta tgctaaaggc tgttcaaacc ctttattgga
     1801 ttggcctagt tgttttactg tggcgtcaaa tctggcgaat tttaatcagc aagagaaatt
     1861 ggtcaaatcc ctggtttatt ccagctttgg cctttgttgg attgagtttt ttccttattc
     1921 tatgggaaac aaattcacgt tacctttatc aatttgcccc tgttatgatt gctttagcaa
     1981 gtttaggttt aatagataag cagtttaaaa agaaaaaaat taaggagtga atatgagtaa
     2041 gattctttat atggtcgtgc catgttacaa tgaagaactg gtacttgatg aaacttccga
     2101 acgtctcaag gctaaatatg aacaattgat ttcaaataat at
//
LOCUS       DATDNM010000270         2105 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1315643, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000270 DATDNM010000000
VERSION     DATDNM010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2105
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1315643"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VI413_04575"
     CDS             <1..282
                     /locus_tag="VI413_04575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEY6913931.1"
                     /translation="TNWVVGKLELDIVAEKDGWLIVVEVKTRSTETFEHPEEAITIRK
                     IRNIVNATHEYIMQFDWKGETRFDVMSVVPHGQDFLIEHIEDAFLSPGK"
     gene            complement(321..575)
                     /locus_tag="VI413_04580"
     CDS             complement(321..575)
                     /locus_tag="VI413_04580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913932.1"
                     /translation="MSSTIDINVISLLVNDDFINYVVNPNLILKEMWDDFFSANTDLI
                     PVAEEAKAILLGEYGYFEMPDGEARELEAQISEKCGFSLA"
     gene            complement(648..1226)
                     /locus_tag="VI413_04585"
     CDS             complement(648..1226)
                     /locus_tag="VI413_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010537951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY6913933.1"
                     /translation="MENNYSKKATYVNSDSETVQLLAEFREGNTAAFSKLYNMYVNLL
                     YSYGCRLTTDMELLKDCIQEVFIKIYNKRTELDTVANFKSYILISLKNKLCDESRKRV
                     NLSDVAVEELDVVSSDNVEKDYIAYEKEQLDNAFVTRMLDQLSPRQRKAIILYYIEEK
                     KYEDICVIMDMNYQSVRNLIHRGISKLRTFAA"
     gene            complement(1440..>2105)
                     /locus_tag="VI413_04590"
     CDS             complement(1440..>2105)
                     /locus_tag="VI413_04590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004309750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6298 domain-containing protein"
                     /protein_id="HEY6913934.1"
                     /translation="QFWLDVIDEWQKETGKDAMVALSTTKDVQDSILSDPKRAAVVDI
                     IDIRYWHYKNDGTVYAPQGGLNLAPRQHARLMKVGKVTFDEAFKAVNEYRTKYPDKAV
                     TYYTENYPDMAWAVLMAGGSCPVLSIADQGFMTAIALMDVMPVNTDKYKMMVKSGTGI
                     IIFAQSKSEIPVQLENGKYVLKFVDSKTGAVEIINKAVSGGQLFDLKVNDGKAGAYWF
                     QKI"
BASE COUNT          649 a          428 c          360 g          668 t
ORIGIN      
        1 acgaattggg ttgtaggtaa acttgaactg gatattgttg ccgaaaaaga tggctggctt
       61 atagtggtgg aagtaaaaac acgctccacg gagacttttg aacatcctga agaggctatt
      121 acgatacgga aaatccgcaa tattgtgaat gctacccacg aatatattat gcagtttgac
      181 tggaagggag aaacacggtt tgatgtaatg tcagtagttc ctcacggaca ggattttttg
      241 attgagcata ttgaagatgc ctttttatca ccgggaaagt gacgaaaggg aagcccacct
      301 gtacgaaaaa atttattata tcaggctaaa gagaaaccac acttttcaga tatctgagct
      361 tccaactccc gggcttcgcc atcaggcatt tcgaagtaac catattctcc gagcaatatc
      421 gcttttgctt cttcagcgac aggaatcaaa tcagtattcg cagaaaaaaa gtcatcccac
      481 atctctttta aaatcagatt gggattgaca acgtagttaa tgaaatcatc attaaccagt
      541 aagctgatta cgtttatgtc tattgttgaa ctcacttaat tgcgttttgt ttctattaag
      601 acgcaattaa actatgttcg tactcaactt taaaattatt tattttctca ggcagcaaat
      661 gtccgtaact ttgaaatgcc acggtgaata aggttacgca ccgattgata attcatatcc
      721 ataataacac aaatatcttc gtattttttt tcttctatat aatacaaaat aatggctttg
      781 cgctgacgtg gcgacaactg atccaacatt cgggttacaa aagcattgtc aagctgttct
      841 ttttcgtacg caatgtaatc tttctctaca ttatcgctcg aaaccacatc caattcctca
      901 actgctacat ctgaaaggtt aacgcgtttg cggctttcgt cacaaagttt atttttcaac
      961 gagatcagga tgtaggattt aaaattagcc accgtatcca attcggttct cttattgtaa
     1021 attttaatga atacttcctg aatacaatcc ttcagcaatt ccatatctgt agtcaaccgg
     1081 caaccataac tataaagtaa attaacatac atattgtaca atttagagaa tgcggctgta
     1141 ttgccttctc taaactcagc aagcaattga actgtttctg aatctgaatt tacataggtc
     1201 gcttttttcg agtaattgtt ttccatcacg gcacagaatt aaattggtta caaatttcta
     1261 tgcagcaaaa atactgtgta cgtacatcaa gtgattggaa attctgattt ggatgtggta
     1321 aaaacaggta acatgcttta gaacatgttt ttgtgtgaaa atcggtcagt ttaggtaaga
     1381 aaaaagccga aacaacattt gagttgaatc ggcttattgc ttaataaagt ttgttttgac
     1441 tatatttttt gaaaccaata tgctcctgcc ttaccatcat tcacctttaa atcaaacaat
     1501 tgaccaccag aaaccgcttt atttataatt tctacagctc cggtcttact atcaacaaac
     1561 ttcaaaacgt attttccatt ttccaattgg accggaattt ctgatttcga ttgggcaaaa
     1621 atgataattc ctgtaccaga ttttaccatc atcttatatt tatcagtatt taccggcatc
     1681 acatccatca gtgcaattgc tgtcataaaa ccctgatcag caatagataa tactgggcaa
     1741 gaaccaccgg ccataagtac agcccatgcc atatccgggt aattttcagt ataataggtt
     1801 actgctttat ccggatactt tgtccggtat tcatttacgg ctttaaaagc ttcgtcgaaa
     1861 gttactttac caactttcat caatcgggca tgctgacgtg gagctaaatt caatccgccc
     1921 tgaggcgcat acactgttcc atcattttta taatgccagt aacgaatgtc gataatatca
     1981 accacagctg cccgtttcgg atcagaaaga atagaatcct gcacatcttt tgtagtactt
     2041 aacgcaacca ttgcatcttt gccggtttct ttttgccatt catcaatcac atccaaccag
     2101 aattg
//
LOCUS       DATDNM010000271         3091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1422884, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000271 DATDNM010000000
VERSION     DATDNM010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3091
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1422884"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1197
                     /locus_tag="VI413_04595"
     CDS             <1..1197
                     /locus_tag="VI413_04595"
                     /inference="COORDINATES: protein motif:HMM:NF015387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding protein"
                     /protein_id="HEY6913935.1"
                     /translation="PAEGYHTSIASGAVYKNKKGELTYLLYNPTSADVNVDIYKDGVV
                     IETIKVGAGKYYNSRFAAGQKPTVTITSHKANDKMALNDLVTVTASASDKDGSVQSVE
                     FFLADVSVGIATTEPFSISFRPATSGIVQLKAISTDNDGIKSDAFSIQIEVLSTPQTS
                     YINRPWNIPSEKILAVQFDKGGAEISCHDNEIAVQGGNNLRADTGVETENSNGTDGNI
                     GYTNAGEWYEYTVNVQQTGVYALSVKMSSAGGGALHVEFDGVNKTGTLNLNKTGAWGN
                     YKDTIVANVTLQAGTQVMRVYIDKTGMNLSSYSFTKVTGLSNPENEWIDVSPNPFNNE
                     LHIKTGNVENFTQMTIHSLTGTLLLQKDVTNVQNIFLNTSDFKSGCYLLTLISENKII
                     TRKIIK"
     gene            1304..>3091
                     /locus_tag="VI413_04600"
     CDS             1304..>3091
                     /locus_tag="VI413_04600"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEY6913936.1"
                     /translation="MKKLISLTIVLLSLSLSGFSQVLLSQGKTCTSSSVEGGNAPKNA
                     VDGSMTTRWASNWAGDVNPADAWWQVDLGKEYYISSVNIQWENAYATEYKIQISNDPA
                     FATSTNIASITKGDGKEDNVVTNNLVKGRYVRMKGITRSTGYGYSFWEFKVYGTETLN
                     PVAVNIDVPYVQYLKLNVDPADVNGNSEFIVQNTDKMLNLTYYEGSPLTLSLLDFRGD
                     FDVNFWALKQGSTTDTIKGLPLITTVYKDMVIHVKLTPRPPKGNVPPVADAGLDKLIC
                     LPTNSLIIDGSKSSDPDGTITGYKWTQTNGPTTATLSNNQTSKVTISNLNLGDYKFRL
                     TVTDDSLATGFDEVVVSVKPPEQIDFQLRAPIDTTMITNTRKPTLTWDAYPGATKYEV
                     YLNITRNDYEWYASGNLLDRYTKVGVTNTNSFTVATDLVDRWTYKWYVIALTTAGSKY
                     SNKGQFGVYIPFMEQEADGISIVNGCRDMNKNGTIEPFEDWHLTPEKRLNDIMSRLTT
                     DEKARQLFYGGNDNPLDGFAFSYGVEGGMRTTQYAASKTRMGIPIAYLGDKVHGWKTI
                     YPTQLGLSATRDMNIVYQCGNLHRVEQKSF"
BASE COUNT          961 a          598 c          673 g          859 t
ORIGIN      
        1 cctgccgaag gctatcatac cagcattgcg tcgggagcgg tttataaaaa caaaaaaggc
       61 gaacttactt atttgcttta taacccgact agtgccgatg taaacgtgga tatttataaa
      121 gatggtgtgg tgattgaaac cataaaagtg ggagcgggga aatactataa ctcccggttt
      181 gctgctggtc agaaaccaac ggtgactatt acttcgcaca aggccaacga taaaatggcg
      241 cttaatgatt tggtgacagt aactgcttct gccagcgata aagatggctc agttcaatcg
      301 gttgagtttt ttctggctga tgtttctgtg ggaattgcca ctacagagcc tttcagcatt
      361 agttttcgtc cggcaacttc aggaattgtt cagctgaaag ccatttctac tgataatgat
      421 ggaattaaaa gcgatgcatt ttcaattcag atagaagtgt tatccacacc tcaaacttcg
      481 tatatcaatc gtccgtggaa tattccgagc gaaaaaattc tcgcagttca gtttgataaa
      541 gggggtgccg aaatctcgtg tcacgacaac gaaatagccg ttcagggagg aaataatctg
      601 cgtgccgaca ctggtgtaga aaccgagaac agcaacggaa ccgatggaaa tattggctat
      661 accaatgccg gcgaatggta tgagtatacc gtgaatgtgc aacaaacagg agtctatgct
      721 ttatcagtaa agatgtcatc ggcaggtggt ggagcacttc atgtggaatt cgatggagta
      781 aacaaaaccg ggacgttgaa cctgaacaaa accggagcct gggggaatta taaagacact
      841 attgttgcca acgttactct tcaggctggt acgcaggtta tgcgggttta tatcgataaa
      901 accggcatga atctaagttc gtacagtttt actaaagtta ccggactttc taaccctgaa
      961 aatgaatgga tagatgtttc gccaaatcca ttcaataacg aattgcatat caaaaccgga
     1021 aacgtagaga atttcacaca gatgaccatt cattcactta caggcacatt gttactgcag
     1081 aaagatgtca cgaatgtaca gaacattttt ttgaacacaa gtgacttcaa gtcgggatgc
     1141 tatttgttga ctcttatttc tgaaaataaa attattacga gaaaaattat aaaatagttc
     1201 aacatgaagg cataaagaca caaaagcctc tgtgtcaaaa cataaagaat tagaacaaag
     1261 ccttagagtc tttttgtctt cgtgttaaat cttacttgaa aatatgaaaa aactaatatc
     1321 actcacaata gtactgttaa gcctcagttt gtcaggcttt tctcaagtgc ttctcagtca
     1381 gggaaaaacc tgtacatctt cttcggttga aggtgggaat gcacctaaaa atgctgtgga
     1441 tggaagcatg actacgcgct gggcaagcaa ttgggccggc gatgtcaatc cggcagatgc
     1501 ctggtggcaa gtcgatttgg gcaaggaata ttacatttcg tcagtcaata ttcaatggga
     1561 aaatgcctat gctaccgagt ataagattca gatttccaat gatccggctt ttgccacctc
     1621 aacgaatatt gcttcaataa ccaaaggcga tggcaaagaa gataatgtcg ttactaacaa
     1681 tctggttaag ggacgttatg tccgtatgaa aggaattacg cggtctaccg gctatggtta
     1741 ttccttttgg gaatttaagg tttatggaac agaaacgctg aatccggtag cggtaaacat
     1801 tgatgtgccc tatgttcaat atctcaaact gaatgttgat cctgccgatg taaatggaaa
     1861 ttccgagttt atcgtacaaa ataccgataa aatgcttaat ctgacttatt acgaaggttc
     1921 tccgttaaca ttgagtttac tcgattttcg aggtgatttt gatgttaact tctgggcttt
     1981 gaaacaaggc tcaactacag atactatcaa aggccttcca ttgataacaa ctgtttataa
     2041 agatatggtt attcatgtga aactaacgcc aaggccacct aaaggcaatg tgccaccagt
     2101 tgcggatgcc ggtttggata aacttatttg cctgccaaca aacagtttga taattgatgg
     2161 ttcaaaaagt tctgacccgg atggaactat tactggttat aaatggacac aaaccaatgg
     2221 tccgactacg gcgacacttt ccaataacca aacttccaaa gtaactataa gtaatttgaa
     2281 tttaggtgat tataagttta ggctgactgt gactgacgat tcactcgcaa ctggtttcga
     2341 cgaagtggtg gtttcggtaa aaccgccgga acagattgat tttcaattga gagctccgat
     2401 tgacactaca atgattacca atacccgcaa accaactttg acatgggatg cttatcccgg
     2461 tgctactaaa tatgaagtct acctgaatat cacccgcaat gattatgaat ggtatgcttc
     2521 cggaaatcta ctcgaccgtt acaccaaagt gggcgtaacg aatactaatt catttacagt
     2581 tgctaccgat ttggttgacc gttggacgta taaatggtac gtaatagcat taaccactgc
     2641 aggttcaaaa tattctaata aaggtcagtt tggtgtgtat attcctttca tggagcagga
     2701 agctgatgga atttctatcg tcaatggctg tcgcgatatg aataaaaacg gaacgattga
     2761 accatttgaa gattggcatt taacacctga gaaacgattg aacgacatta tgagtcgcct
     2821 gacaaccgac gaaaaggccc gacaactttt ttacggtgga aacgacaatc cattggatgg
     2881 atttgctttt tcgtacggag ttgaaggtgg tatgcgcacc acgcaatacg ccgcttcaaa
     2941 aacccgcatg ggaattccta ttgcttactt aggcgataaa gtgcatggtt ggaaaaccat
     3001 ttacccaact caactcggac tttctgcaac acgcgatatg aatattgttt atcagtgtgg
     3061 aaatctgcat cgtgttgagc aaaaatcatt t
//
LOCUS       DATDNM010000272         2761 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1209438, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000272 DATDNM010000000
VERSION     DATDNM010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1209438"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..315)
                     /locus_tag="VI413_04605"
     CDS             complement(<1..315)
                     /locus_tag="VI413_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008779931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6913937.1"
                     /translation="MTNDGMVLRTEHLFKKYGKRTVVNDVSINVKQGEIVGLLGPNGA
                     GKTTTFYMTTGLVTPNSGKIFLNDEEITKFPVYRRAQKGIGYLAQEASVFRKMTVEDN
                     IKS"
     gene            761..1516
                     /locus_tag="VI413_04610"
     CDS             761..1516
                     /locus_tag="VI413_04610"
                     /inference="COORDINATES: protein motif:HMM:NF021540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2271 domain-containing protein"
                     /protein_id="HEY6913938.1"
                     /translation="MKKLLTSLLVLAFVVTINAQNQAPEATTATAGTLTISAKVTYTS
                     PYFFAVWVNNPAGTFLRTLTMYGTNTSYYADLVHWNSESGRNKVNAVTGATQSSTTTY
                     TSTWNAKDQANSAVVADGTYPVKIEMTSESYATNSKYISTTFTKGPAAQTVTPTAVSP
                     ISAITLTWTPVNTAIDNVEFSKLYNVYPNPAISSVYAAGSDIKEVQICTLSGKILLSS
                     KEQKVDVSVLPKGFYLAVIYAKDGMVVKKIEKL"
     gene            1746..2480
                     /locus_tag="VI413_04615"
     CDS             1746..2480
                     /locus_tag="VI413_04615"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913939.1"
                     /translation="MRKILLSVLSLLCIAMTNSQTTGTLTFSVATAPTGMGFYEPNNV
                     LAIWIEDSSNHFVKTMLEYGLIRYEYLDLWNNASGGNKVDAKTGATKTDHGVRTCIWS
                     GTDILGAVVGDGTYKICMQLTDDDFSGVNKTFTFTKGPTSQTLTPANALPSFKDVSIQ
                     WLPANTAIADLKQENLYSVYPNPTKSTAFVSGTEIKKIELCTLAGKRIFKTHEQRLNL
                     STLPKGLYLVRIYTKTATVTKKIQKE"
BASE COUNT          940 a          426 c          488 g          907 t
ORIGIN      
        1 agactttatg ttgtcttcta cagtcatttt acggaataca gaagcttcct gtgcgagata
       61 accaattcct ttttgagcac gacggtaaac gggaaatttt gttatttctt cgtcattcaa
      121 aaagattttg cctgaattag gagttaccaa tccggttgtc atataaaaag tggtagtttt
      181 tccggcacca ttgggtccga gcaatcctac aatctcacct tgtttaacgt tgatggaaac
      241 atcgtttact actgtgcgtt ttccgtattt cttgaataaa tgttcggtgc gaagcaccat
      301 gccgtcgttt gtcatatact tatattagaa gcacaaaagt acactttttt gtaacgatat
      361 gcaattctat aattggctaa ggtaaaaaag tgacgatttt agaattatta atataatata
      421 ttttgaattc aatgctgata tgtgtaattt tgtatttatt ataaagtagg ttttgttaca
      481 atagcaaagt gctctattat atagaatgtt tgtttattag aaatctaata ctgttaggtg
      541 cgaattgaat atttataacg ataaagaatc aaagtgaaat aaaaatggtg gattgattgt
      601 tcaaattaat tcgaatatgt gtaatttgcg ttcaaattgt tgttttttta gcttgataag
      661 aaaatttatg tagaaaaaag cttatgtttg tgcgaaaatc atattggaaa tattactcag
      721 aattatatca attacaaaac atattaaaaa attcaagttt atgaaaaagc ttttaacctc
      781 tctcttagtt ctagcatttg tagtaacaat caatgcccaa aatcaagcac cggaagctac
      841 aacagcaact gccgggacac tgactatttc agctaaagtt acatatacga gtccctattt
      901 ttttgcagtt tgggtgaata atcctgctgg tacatttttg cgtactttga caatgtatgg
      961 caccaataca tcttattatg ctgatttagt tcattggaac tccgaaagtg gcagaaataa
     1021 agttaatgct gttacaggtg caactcaatc ttcaacaact acttatactt cgacatggaa
     1081 tgcaaaagat caagcaaata gcgctgttgt ggcagatgga acgtatcccg tgaaaataga
     1141 gatgacttca gaaagttatg ctacaaacag taaatatatt tctactactt ttacaaaagg
     1201 accagcagca caaactgtga ctccaaccgc tgtaagtccg atttctgcta taacattgac
     1261 atggacccct gtgaacacag ctattgataa tgttgaattc agtaaattat ataatgtata
     1321 tccaaatccg gctatttctt ctgtatatgc tgctggcagt gatattaaag aagttcaaat
     1381 ttgtacactc tcaggtaaaa ttcttttatc aagcaaagaa caaaaagtag atgtaagtgt
     1441 attgccaaaa ggattttatc ttgcagtaat atatgcaaaa gatggaatgg ttgtaaagaa
     1501 aatagagaaa ttgtaatttc tgaacaaatt cttgttaaac tatcctgcaa attaaatctt
     1561 agagattgga tttgcaggat ttttttattc atgatttatc ggatttaatg accaaataca
     1621 tgtaaaatca ttcattttcc ataaatatca ggcagtttaa attttttatt tttgagtggg
     1681 tgttttttgt aattacattt gcactgattt ataataagta taaatatgaa taataatcaa
     1741 attgtatgag aaaaatatta ctttcagttc tttcattgct gtgtattgca atgacaaatt
     1801 cacaaactac aggcacattg accttcagtg tggcaacagc tcccactggt atgggcttct
     1861 atgagccgaa taatgtttta gctatttgga tagaagacag ctccaatcac ttcgtaaaaa
     1921 caatgctgga gtatggattg ataagatatg aatatcttga cctgtggaat aatgcatcag
     1981 gtggaaataa agtcgatgca aaaacaggtg caacaaaaac agaccatgga gtgagaactt
     2041 gtatttggag cggaacggat atcttgggtg cagttgtggg agacggaacg tacaaaatat
     2101 gtatgcaact tacggacgat gatttttccg gagttaataa gacttttact tttacgaaag
     2161 ggccaacttc gcaaacactt acaccagcca atgcgctgcc gagttttaaa gatgtttcaa
     2221 ttcaatggct gcccgcaaat actgctattg ccgacttgaa acaggaaaat ctatattcag
     2281 tttatccaaa tccaacaaaa tcgactgcat ttgtaagtgg aacagaaata aaaaaaattg
     2341 agctatgtac acttgccgga aaaagaattt ttaaaacgca tgaacaaaga ttgaatctca
     2401 gtacattacc gaaaggattg tatttagtaa gaatttacac aaaaacagca actgttacaa
     2461 agaaaattca gaaagagtaa ttcaatgaat tttagagtga tgcaaatccg gttaatcaaa
     2521 ttattttatt tgactaaccg gatttgcagt ttatttgcaa ttttctcccc tgtttatggt
     2581 atgaaaaata cactttggat ggtattgtgg ctatttgttg acagctatat ctttgcatta
     2641 tcaataatta atacataaat gatatgaaaa catatgcgat ttgcccgatt tccgataaaa
     2701 gaataaacga acacgttaca cgcagtaatg catttttgac tgttttactt ttattctctt
     2761 a
//
LOCUS       DATDNM010000273         3190 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1423140, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000273 DATDNM010000000
VERSION     DATDNM010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1423140"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1249
                     /gene="fucP"
                     /locus_tag="VI413_04620"
     CDS             <1..1249
                     /gene="fucP"
                     /locus_tag="VI413_04620"
                     /inference="COORDINATES: protein motif:HMM:TIGR00885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015535 - fucose:proton symporter activity
                     [Evidence IEA];
                     GO_process: GO:0015756 - fucose transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HEY6913940.1"
                     /translation="AIPNNLNDILIPQFMKSFELNRLQAGLVQSAFYMGYFLLAMPAA
                     YIMDRFNYKTGMIIGLLLFATGCFIFYPAATTSKYEVFLLALFVIASGLAFLETGANS
                     FISVLGDPDTSAQRLNFSQAFNPLGAMSGVLIGKIFIFSGIEHSSTQVEALKASGQYQ
                     SYLNAETLRVIPPYMVIGAVILVWAFLIWKVKFPVETETGTHDKLDTTKKGSHGHFSK
                     LFKYPHFIKGIIAQFFYVGAQVGTWSFMIAYIKDYLNKPEKEAGPYLLISLLAFGVGR
                     FFATALMRKFDPGKLMGVYSVINVVLVAIAVSFPGEVGGYALVASSFFMSLMFPTIFA
                     LGVKGLGPNTKIGGSMIIMAIIGGAIWTPIMGLISDRTGSMALAMIVPLIGYLYVMYY
                     AFVGSKPSGPLFDGDEYKAVASH"
     gene            1263..2249
                     /locus_tag="VI413_04625"
     CDS             1263..2249
                     /locus_tag="VI413_04625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014298175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY6913941.1"
                     /translation="MSKIKFSNSSTKIKTLADGISLSIMQGKLSVGDNLPSINEASAL
                     HQVSRDTVFKAYKMLKSRGVIDSNPMKGYFVKGEVNHVLLLLDTYSSFKQNLYRRFTE
                     NLPENYKVDLIFHQYNEQLFETIVRESIGRYSMYVVMNFSNDQFSETLKLIPATKLLL
                     LDFGNFDKTGYSYICQDFNESLYNSLNEGVDLLRKYIKLIFVFPEELCHPISSIDYFK
                     KFCSDHNFEYEIIRKESDWKGVGEGTAYLCILSEDLVKIIKDADSAGLGLGDDIGLIS
                     YNNEPILEVIKNGISAISIDFGLMGEKAASFVKTKQPIQEYLPTKLIIRNSI"
     gene            2341..>3190
                     /gene="fucI"
                     /locus_tag="VI413_04630"
     CDS             2341..>3190
                     /gene="fucI"
                     /locus_tag="VI413_04630"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009133025.1"
                     /note="catalyzes the conversion of the aldose L-fucose
                     into the corresponding ketose L-fuculose; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HEY6913942.1"
                     /translation="MQAGKSTGEISGAGVYTRKEKTGRLQGENPKIGIRPTIDARQGG
                     VRESLEAQTMNMAKNLANFISSSLKYSDGTPIECVIADTTIGRVDEAAACAEKFKLAG
                     VGATITVTPAWCYGSETIDMDSQLPKAIWGFNGTERPGAVYLAAALAGHNQKGIPAFG
                     IYGRDVQDGGDNNIPADVQEKILRFTKAAIAVASLKGKSYLSIGSVSMGIAGSIVNTD
                     FFQDYLGMRNESVDMSEINRRVQLGIFDPEEFKKAMEWTAKYCKPNEGEDTNDDDKKK
                     SRAKLDE"
BASE COUNT          953 a          592 c          697 g          948 t
ORIGIN      
        1 ggctatcccc aataatctca atgacattct gatacctcag tttatgaaat cgttcgaact
       61 gaaccgtctt caggccggtt tggtgcaatc ggcattttac atgggctatt ttctattggc
      121 aatgccggct gcctatatca tggatcggtt taactacaaa accgggatga ttatcggatt
      181 actcctattt gcaaccgggt gttttatttt ttatccggca gccaccacaa gtaaatatga
      241 agttttttta cttgctttat ttgtaatagc aagtggacta gcttttttag aaaccggagc
      301 taattccttt atatccgttt tgggcgatcc cgatacctcc gcacaacgat tgaatttttc
      361 gcaggctttc aatccattag gagccatgag tggtgttctg attggcaaaa tatttatttt
      421 ttcgggtatc gagcattcca gtactcaggt tgaagctctt aaagcttccg ggcaatatca
      481 aagttatttg aatgcagaaa ctctgcgcgt cattccgcct tacatggtta ttggtgctgt
      541 tatacttgtt tgggcatttt tgatttggaa agtgaaattt ccggttgaaa ctgaaacagg
      601 tacacatgac aaattagata caaccaaaaa aggtagccac ggtcatttct ccaagttatt
      661 caaatatcca cacttcatca aagggattat tgcccagttt ttttatgttg gagctcaggt
      721 tggaacgtgg agtttcatga ttgcttatat caaagattat ttgaataagc ctgaaaaaga
      781 agccggacca tatcttctta tttctttgtt agcttttggt gttggcagat tctttgccac
      841 agccttaatg cgaaaatttg acccgggcaa gctgatgggc gtttatagcg taataaatgt
      901 agtgttggta gcaattgccg tttcttttcc gggggaggtt ggcggatatg ctctggttgc
      961 ttccagtttc tttatgtcac tgatgttccc tactattttt gctttgggcg taaaaggcct
     1021 tggaccaaat acaaaaattg gtggctccat gattattatg gctattatcg gtggtgcaat
     1081 ctggactccg ataatgggat tgatttccga tagaaccgga agtatggcac tggctatgat
     1141 tgttccgcta attgggtatt tatacgttat gtattatgca tttgttggtt ccaagccatc
     1201 aggcccgctt ttcgatggcg atgaatataa agccgttgct tcacattaaa cagcaaaaaa
     1261 ggatgtcaaa aataaaattt tcgaattctt caacaaaaat taaaaccctt gcagatggaa
     1321 tcagtctttc catcatgcag gggaaactgt cggtgggcga taatttgcca tctatcaatg
     1381 aggccagcgc gttacatcag gtttcgcggg acacggtttt taaggcttac aaaatgttaa
     1441 agagtcgcgg agtgattgat tccaacccga tgaaaggtta ttttgtaaaa ggagaagtaa
     1501 accatgtatt gcttttgctc gatacgtatt catctttcaa gcaaaatctc tatcgccgat
     1561 tcaccgaaaa tttgcccgaa aactataaag ttgatctgat ttttcatcaa tacaatgaac
     1621 agcttttcga aaccattgtc cgcgaaagta taggccgtta tagtatgtat gtggtaatga
     1681 atttttccaa cgatcagttt tctgaaacat tgaaactgat accagcaacg aaacttctgt
     1741 tgcttgattt tgggaatttc gataaaaccg gatactcata catctgtcag gactttaacg
     1801 agtctcttta caatagcctg aatgagggtg ttgatttact aagaaaatac ataaagttaa
     1861 tcttcgtttt ccccgaggaa ctttgtcacc cgataagttc aattgattat tttaaaaagt
     1921 tctgttcaga ccacaatttt gagtacgaaa ttatccgaaa ggagtctgat tggaaggggg
     1981 taggggaagg gacagcctat ttgtgcatct tgtcagaaga tttggtaaaa attataaagg
     2041 atgctgattc tgccggattg ggattagggg atgatatcgg gcttatttct tataataatg
     2101 aaccaatatt ggaagtaatt aagaatggaa tttctgccat aagcatcgat tttgggctaa
     2161 tgggcgaaaa ggcggcttcc ttcgtgaaaa caaaacaacc aatacaggaa tacttgccaa
     2221 ctaaactgat aatcaggaat tcaatctgaa tatcaccttt ttttgagtag aaaacagcac
     2281 agttcagcac aactataaat aaaaacataa aaacataaaa actttaatat taaaaaaatc
     2341 atgcaagcag gaaaatcaac aggcgaaatt tcgggagccg gagtttatac ccgtaaagaa
     2401 aaaacaggaa gattacaagg cgaaaatcct aaaattggta ttcgtccgac tattgatgcc
     2461 cgtcagggtg gagtacgcga atcgttagaa gcgcaaacta tgaatatggc taaaaacctg
     2521 gctaacttca tcagttcgtc attgaaatac agcgacggaa ctccgataga atgtgttatt
     2581 gccgatacta ccattggtcg tgtagacgaa gctgcagctt gtgccgaaaa gtttaaactg
     2641 gccggcgttg gcgcaacaat caccgttaca ccggcatggt gctacggaag cgaaaccatt
     2701 gatatggact cgcaattacc taaagctatt tggggattca acggcacaga acgtccggga
     2761 gcagtttacc tggcagccgc gttggctgga cataatcaaa agggcattcc tgcatttggt
     2821 atttatggtc gcgacgtaca agatggtggt gacaacaata ttccggctga tgttcaggaa
     2881 aaaatccttc gttttacaaa agctgcgatt gcagttgcta gtttgaaagg aaaatcatat
     2941 ttgtcaatcg gctcggtttc tatgggaatt gctggttcta tcgtaaatac tgactttttc
     3001 caggattatc tgggtatgcg taacgaatcg gttgacatga gtgaaatcaa ccgtcgcgtc
     3061 caattaggta tttttgatcc ggaggaattc aaaaaagcca tggaatggac cgcaaaatat
     3121 tgcaaaccaa acgaaggcga agatacaaac gacgatgaca aaaagaaatc gcgcgccaaa
     3181 ctggacgaag
//
LOCUS       DATDNM010000274         2624 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_568641, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000274 DATDNM010000000
VERSION     DATDNM010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568641"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1300)
                     /locus_tag="VI413_04635"
     CDS             complement(<1..1300)
                     /locus_tag="VI413_04635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004318215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family protein"
                     /protein_id="HEY6913943.1"
                     /translation="MSKFVIYQVFPRLFGNDNTTNKQNGTIDENGCGKFNSFTPKALE
                     QIKSLGATHVWYTGIIEHATQTDYSAYGIPKDHPGVVKGKASSPYAIKDYYDVDPDLA
                     ENVENRMAEFEALVKRTHEVGMKVIIDFVPNHVARQYHSDAKPAGVIDLGETDHSEWA
                     FSPLNNFYYIPNQPLNPQFDVKGYMEFPAKATGNDQFTASPTINDWYETVKLNYGVNY
                     VEGGQKQFDPIPDTWFKMRDILLFWASKRIDAFRCDMAEMVPVEFWGWAITQVKERYP
                     DILFIAEVYQPAEYRNYIFNGKFDYLYDKVGLYDMLRDVTSRNSPVRDITSCWQSLEG
                     IENKMLNFLENHDEQRIGSGFFSGNGMCAQPAMIVAATLTQAPVMIYAGQELGELGMD
                     NEGFSGMDGRTTIFDYWGVKSLQAWSNGGMFDGKKLTAEHQ"
     gene            complement(1346..2542)
                     /locus_tag="VI413_04640"
     CDS             complement(1346..2542)
                     /locus_tag="VI413_04640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913944.1"
                     /translation="MNSTRFFGIILLVFQIFLPSCKDPNEYRVDPAFADYLLRFENEV
                     GARGRTFDVTTNGLIIEFATLKNNTAGLTHYENPIRIEIDRTYWNSISNTAGADLMKE
                     NLIFHELGHGLLKRKHLNSTLENGDWKSIMCGGTKVNNRPWNINYKGIRRDYYIEELF
                     NQNTPAPEFSSNQLLVDTLGYSPKLKLNFNTTSKNDFGWDLVDDNQHKISMENGRMRF
                     ESKVSDVFLMFAKTSIDIQSDFSYELNLEYANSTDLSGQFGIVFGTVPDGSNGANDPI
                     EYFSINKSKKMYMGNRTWYSFFTELSENQILPNGRNKLKVFKIGDMLYYFINNVYSYC
                     SEIESKGSGLHYGFMVPSKGVVLLDNFSIAQRAGTGVASKVKQSQPVEFEIKIVKSLN
                     QNVINK"
BASE COUNT          805 a          583 c          430 g          806 t
ORIGIN      
        1 cttggtgctc cgctgtcagt ttctttccat caaacatgcc accattggac cacgcctgta
       61 aagatttaac gccccaataa tcaaaaatgg tggttcgtcc gtccatacca ctgaaccctt
      121 cgttatccat tcccagttcg ccaagttcct ggccggcata aatcataacc ggagcttggg
      181 taagcgtagc agccactatc atggcaggtt gcgcacacat gccattaccg gaaaaaaaac
      241 cggaaccaat gcgttgctca tcgtgatttt caagaaaatt gagcatctta ttctcaattc
      301 cttccagcga ttgccaacag gaagtaatat cccgcactgg cgaattacga cttgttacgt
      361 cacgcagcat atcatacaag ccaactttat catacaaata atcaaacttg ccattaaata
      421 tatagttcct atattccgca ggttgataca cttctgcaat aaaaagaata tccgggtacc
      481 gctcttttac ctgcgttatt gcccaacccc agaattcaac aggaaccatt tcagccatat
      541 cacaacgaaa agcatctatt ctcttcgaag cccaaaacag caaaatatca cgcattttaa
      601 accatgtatc cggaatcgga tcaaattgct tttgcccacc ttccacataa ttcacaccat
      661 aattcagttt cactgtttcg taccagtcat ttatagtagg cgaagctgta aactggtcat
      721 ttcctgttgc tttcgcagga aattccatgt atccttttac atcaaactgc gggttcaatg
      781 gttgatttgg aatataatag aaattattta gcggagaaaa ggcccattct gaatgatcag
      841 tttcacctaa atcgataact ccggctggct tagcatccga atgatactgc cgggccacat
      901 ggttcggcac gaaatcaata atcactttca tacctacctc atgcgtccgt tttaccaacg
      961 cttcgaattc agccatgcgg ttctcaacat tttcggccaa atccggatcc acatcgtaat
     1021 aatctttaat ggcataaggt gaactggctt tcccttttac cactccggga tgatcttttg
     1081 gaatgccata agccgaataa tcggtttgag tagcatgttc aataatgcct gtataccaga
     1141 catgcgttgc acctaatgat tttatctgtt ccaaagcctt tggagtaaat gaattgaact
     1201 ttccacaccc gttttcatct atagttccgt tttgtttgtt ggttgtatta tcgttaccaa
     1261 aaaggcgtgg aaaaacctga tatattacaa attttgacat gaaaattctt ttataatttt
     1321 acaaatcgga taatggttta tctgattatt tgttgataac attctgattc agcgatttta
     1381 cgattttaat ctcaaattcg acaggttgac tctgtttcac ttttgaagca actcctgtgc
     1441 ctgctcgttg agcaatggaa aaattatcca acaaaaccac accttttgat ggcaccatga
     1501 acccataatg gagtccactt ccttttgatt ctatttctga acaataacta tacacattgt
     1561 tgataaaata atacaacata tcacctattt taaaaacctt gagtttattt cgtccattgg
     1621 gcaaaatctg attctcagac aactctgtaa aaaaactgta ccaggttcga ttacccatat
     1681 acatcttctt acttttattg attgaaaaat actcaatcgg gtcatttgca ccgtttgagc
     1741 catcaggtac tgtaccgaaa acaatcccaa actgtccgct caggtcagta gagttggcat
     1801 attccaggtt taattcatac gaaaaatcgg actggatatc aatgctggtc tttgcaaaca
     1861 taagaaaaac atcgcttact ttggattcaa aacgcatgcg cccattttcc atggagattt
     1921 tatgctgatt atcatccacc aaatcccagc caaagtcatt ttttgaagta gtattaaagt
     1981 ttaatttcaa tttcggcgaa taacccaacg tatcgaccaa aagttgattg cttgaaaatt
     2041 caggggcagg tgtattttga ttaaacagtt cctcaatata ataatctctg cgaatgcctt
     2101 tgtaattaat attccacgga cggttattta ctttagttcc accacacatt attgatttcc
     2161 agtctccatt ttcaagcgtt gagtttaggt gtttacgttt aagcaaacca tgtccgagtt
     2221 catgaaaaat caaattttcc ttcatcaagt cagccccggc tgtattacta atggagttcc
     2281 aataagttct atcaatctct atccggatag gattctcgta atgtgtaaga cctgccgtat
     2341 tatttttcaa tgtagcaaat tcaataatca aaccattggt tgttacatca aaagtccggc
     2401 cacgagcccc gacttcattt tcgaaacgca gcaaataatc ggcaaatgcc ggatcaaccc
     2461 tatactcgtt tggatcctta caggatggga gaaaaatctg aaaaacaagt aatataattc
     2521 cgaaaaaccg tgtagaattc atattatttt aaaaatttac gcacaaatat aaacaaaaaa
     2581 ccaaaggtag gcgttattgg aataattaca attaattttt aaaa
//
LOCUS       DATDNM010000275         2376 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_34312, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000275 DATDNM010000000
VERSION     DATDNM010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2376
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34312"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..330
                     /locus_tag="VI413_04645"
     CDS             76..330
                     /locus_tag="VI413_04645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913945.1"
                     /translation="MKARKRIFDIRKHSRTTFSNENLWFFSEENSDNQAIPAQKKSGR
                     NEGFDAIENYYSRYSFEEPEKEKSKKESPFIVDWQMSDSF"
     gene            481..1770
                     /locus_tag="VI413_04650"
     CDS             481..1770
                     /locus_tag="VI413_04650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006800383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6913946.1"
                     /translation="MNVLMFGWEFPPNISGGLGTACYGIIKGLSEYKDIHVSFVIPKS
                     LGNELSSGNLNLISADKVLVGQKNVAEMQWENVRLIQVQSELTPYLTPETFSEEVSAK
                     HSAINKKTGGYTIPFSGKYGPNLFDEINNYAKVAQSIANENDFDLIHAHDWLTFPAAV
                     TAKRISGKPLVAHIHSTDFDRSGGAINPDIYAIEKQGMDEADQIIVVSNKIKDRLTAQ
                     YHIDPKKITTIYNGIDPDTDEIKEMKHSSQKDKVVTFLGRITIQKGPEYFVDVARMVI
                     HRMKNVHFVMAGNGELRDKILELSVKYGISDRFHFAGFLDGAEVDEMLARSDLFIMPS
                     VSEPFGIVPLEAMQANVPVIISLQSGVSEVIHNVIKTDFWDVHAMADAVHGILKYKKL
                     SETLIAEGKDEVGELNWDKPANQIRQVYFKTLVKQAY"
     gene            1772..>2376
                     /locus_tag="VI413_04655"
     CDS             1772..>2376
                     /locus_tag="VI413_04655"
                     /inference="COORDINATES: protein motif:HMM:NF015052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HEY6913947.1"
                     /translation="MKNICLYFQVHHPFSLQTFRFFDIGGSKPYYNYELIEKEIQEAA
                     TNYYIPANEYLLKLIQYFKGNLKLSFNISTTALDQFLIYSPKLITSFRQLAETGYVEF
                     TGNVMSHSIVSLSGEEQTFLASIKQSRQRMEYYFGQRPSVFVNTDLLFTNQIAKCADK
                     AEYPAILTTGINRILQWRSPNYLYSTENHTPLKILFRNEKL"
BASE COUNT          789 a          454 c          480 g          653 t
ORIGIN      
        1 tagcattttt taacatttga caggtaactt taggtgtata tttaagtata aggatttgaa
       61 ataatataag aaatcatgaa agcacgaaaa cgcatctttg acattcgaaa acattcgagg
      121 acgacatttt cgaatgaaaa tttatggttt tttagtgagg aaaattctga caatcaagct
      181 atacctgccc aaaaaaaatc gggtagaaat gagggttttg atgctataga aaattactac
      241 agccgttatt cgtttgagga accggaaaaa gaaaaaagca aaaaagaaag cccctttatt
      301 gtagattggc aaatgtctga cagtttctga taaaaaaccg ccacctgcct actgtgacct
      361 gactatcaac cttatttcaa ttgaacttca aaatatgatt tcggatagaa tctataacat
      421 ttcagtccgg aatcatattt tgattaaatg aatataggta ttcattaaat cgataaaagg
      481 atgaatgtac tcatgttcgg atgggaattt ccgccaaaca tatcaggtgg attaggaact
      541 gcctgctatg gtattataaa aggtctgtcc gaatataagg acattcatgt atcttttgta
      601 attccaaaat cgctggggaa cgaactttcg tcgggcaacc tcaatctgat aagtgccgat
      661 aaggtattgg ttggacaaaa gaatgttgca gaaatgcaat gggaaaatgt gcgtttaatt
      721 caggtacagt cggagcttac gccctatctc actccggaaa cattttccga agaagtttca
      781 gccaaacaca gcgcaataaa caaaaaaact ggaggttata ccattccttt ttcgggcaaa
      841 tacggaccga atctgttcga cgaaataaac aactacgcca aagttgccca atcgattgcc
      901 aacgaaaatg attttgacct gatccatgcc cacgattggc tgacttttcc agctgcagtt
      961 accgctaaaa gaatttcagg caagcccctc gtggcacata ttcattcaac agattttgac
     1021 cgtagcggag gtgccattaa tcctgatatc tatgccattg aaaaacaagg tatggatgaa
     1081 gcggatcaaa ttattgtagt tagtaacaaa attaaagacc gactgactgc acaataccat
     1141 attgatccta aaaaaattac aaccatctac aacggcattg accccgatac cgacgaaatt
     1201 aaagaaatga agcactcatc ccaaaaggac aaagtggtta catttcttgg ccggataacg
     1261 atacaaaaag ggcctgaata ttttgtggat gtggcccgaa tggtaattca ccggatgaaa
     1321 aatgtacatt ttgtgatggc cggaaatgga gagttaagag ataaaattct ggaactgagt
     1381 gtaaaatatg gcatcagcga tagatttcat tttgccggtt tccttgacgg agccgaagtc
     1441 gacgaaatgt tggcgcgaag cgatttattt atcatgccat cagtctccga accgtttgga
     1501 atcgtcccgc tggaagctat gcaagccaac gttccggtta ttatatcgct tcaatctggt
     1561 gtttccgaag tgatccacaa cgtgataaag actgattttt gggatgtgca tgccatggcc
     1621 gatgcggttc atggaattct gaaatacaaa aagttatcgg aaacgcttat tgcagaaggg
     1681 aaagatgaag ttggcgagct taattgggat aaaccggcaa accaaatccg tcaagtttac
     1741 tttaaaaccc ttgtaaaaca agcctactga aatgaaaaat atatgtctct attttcaggt
     1801 gcaccatcct tttagtctac agactttcag attctttgat attggtgggt caaagcccta
     1861 ttacaattat gaattgattg aaaaagaaat ccaggaggct gcaacaaact attatattcc
     1921 ggcaaacgaa tatttattga agctcatcca gtatttcaaa ggaaatctga agctttcgtt
     1981 taacatctca accactgcgc tcgatcagtt tttgatttat tcgccaaaac tgataacaag
     2041 cttcaggcag ctggccgaaa ccggatatgt agaatttacc ggcaacgtaa tgtcgcattc
     2101 aattgtttcg ctgtcaggcg aagagcaaac gtttctggcg agtatcaaac aaagtcggca
     2161 acgaatggaa tactactttg gccaacgccc ttcggtgttt gtaaataccg atctgctgtt
     2221 taccaatcaa atagcaaaat gtgccgacaa agctgaatat ccggcgattt taaccaccgg
     2281 aatcaaccga attttgcagt ggcgaagtcc caattatctg tattcaacag aaaaccatac
     2341 tcctttaaaa attttgttta gaaacgaaaa gttgag
//
LOCUS       DATDNM010000276         2198 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1101398, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000276 DATDNM010000000
VERSION     DATDNM010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2198)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2198)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2198
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1101398"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /locus_tag="VI413_04660"
     CDS             <1..446
                     /locus_tag="VI413_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913948.1"
                     /translation="EDDSWEQMSNFPGEPRTAAVSCTDSNHYFYGLGGGNRSDWWEYF
                     PEADKWEKRSSMPGKGRVNAIAFSINHRFFIGTGRHMGGSLTTGQFFNDIMEYDVLKD
                     VWYKRGTIPTVGRENAIAFVLSNKAFIGFGETDEIIFNDLWSFEP"
     gene            475..1911
                     /locus_tag="VI413_04665"
     CDS             475..1911
                     /locus_tag="VI413_04665"
                     /inference="COORDINATES: protein motif:HMM:NF025418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule assembly Wzi family protein"
                     /protein_id="HEY6913949.1"
                     /translation="MRERIILSLFSLILISAISAQTDTIQYDFSLSTRTASGLSAPFW
                     FQNNQFGIVPFESNSSTVLAKIFKNKSTKKNLFDYNFIASGYLNISKKESSIKLHELY
                     INTRIWVFNASVGMHEEIIGNQDISLSSGGLLFSRNSRPIPKIFIGIEDFTPLLFKNS
                     FVEIKGGISHGWFTDQIYTKDLLLHHKYGYLRFGGNKSPIHVQYGVDHVAQWGGTTPL
                     FGKQPSGFKDYINVFLARSGSSTASIYDQINVGGNHIISQSTKAELNLNNFEISAYWQ
                     NLMEDKPIRFIWNTVNISDGLWGLTIQNRKFPFIKKIVYECLNTTDQSGPYHDIDGVV
                     YGGGDNYFNNYLYQNGWTHYGRTIGTPFITSPIYNKNNEIQILNNRVQIHHIGLEGEF
                     KQYNFKALCSFSKNYGNYSNNYPIEKMLASTNLLFELNKHFEKLYQINAGIAVGIDIG
                     EAYGNNVGFSFKISKCDYFLSPIKVKNK"
     gene            1942..>2198
                     /locus_tag="VI413_04670"
     CDS             1942..>2198
                     /locus_tag="VI413_04670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913950.1"
                     /translation="MSTESKFLKAVRLTNLFSILFLVVELAVYINIFQRIAFGIALIS
                     YILEIVLEKKWRQFKWENSKKQWFFIVVIFFFLLQFIFLPF"
BASE COUNT          750 a          362 c          404 g          682 t
ORIGIN      
        1 cagaagatga tagttgggag caaatgtcga atttccctgg agagccacga actgcagcag
       61 taagctgcac agatagcaat cactattttt atggacttgg cggcggaaac agaagcgatt
      121 ggtgggagta ttttccagaa gctgataaat gggagaaacg aagttccatg cctggaaagg
      181 ggcgtgtgaa tgcaatagca ttttcaataa accatcgctt tttcattggt accggcaggc
      241 atatgggagg atcattaaca accggtcaat tttttaatga cataatggaa tacgatgtac
      301 taaaagatgt ctggtacaag cggggaacaa ttccaacagt aggtcgtgaa aatgcaatag
      361 cctttgtatt aagcaataag gcctttatag gttttggaga aacagatgaa atcatattca
      421 atgatttatg gagttttgag ccttgatttc acaaaaccgc caattaagaa ctaaatgaga
      481 gaacgaatca ttttatcatt attcagctta atacttatat ctgctatttc agcgcagact
      541 gacaccattc aatatgattt tagcctgagc actcgaactg caagcggtct gtctgcacct
      601 ttctggttcc aaaataatca atttggtatt gtcccttttg aatcaaacag ttctacagta
      661 ttagccaaaa tctttaaaaa caaatcaact aaaaaaaatc tttttgacta caactttatt
      721 gcaagtggct acttgaatat ctctaaaaaa gaaagttcaa ttaagttgca cgaactttat
      781 attaacaccc ggatttgggt tttcaatgca agtgttggta tgcacgaaga aataattgga
      841 aatcaagaca taagcttgtc gagtggtggt ttattatttt cgcgcaactc acgtccaata
      901 ccaaaaatat ttatcggaat tgaggatttt acacctttat tattcaaaaa cagttttgta
      961 gaaattaaag gtggcatctc tcatggttgg tttaccgacc aaatctatac gaaagatctg
     1021 cttcttcacc ataaatatgg ctatttgcga tttggaggaa ataaaagtcc tattcacgtt
     1081 cagtacggcg tagatcatgt agcccagtgg ggaggaacga ctcctttgtt tggtaaacag
     1141 ccttcaggtt ttaaagatta tatcaacgta ttcctggcca gaagtggctc ttctacagca
     1201 agcatttacg accaaattaa tgtgggtggc aaccatatta tttcgcaaag tactaaagcg
     1261 gagttaaacc taaataactt tgaaataagc gcctattggc aaaacctaat ggaagataaa
     1321 cccattcgat ttatctggaa tacagtaaat atttcggatg gtttatgggg attaaccatt
     1381 caaaacagaa aattcccatt cataaaaaaa atagtatatg aatgcctgaa tacaacagac
     1441 caatcaggac catatcacga tatagatgga gtagtttatg gaggtggcga taattatttc
     1501 aacaattact tatatcaaaa tggctggact cattatggac gaactattgg cacgccattt
     1561 ataacttcac caatctacaa taagaataat gagattcaga ttctaaacaa ccgtgttcag
     1621 attcatcaca ttggtctgga gggtgaattc aagcaataca atttcaaagc actgtgttca
     1681 ttttctaaaa attacggaaa ttactccaat aattacccaa ttgaaaaaat gcttgcatct
     1741 accaatctgt tgtttgaact aaataaacat tttgaaaaat tatatcaaat taatgcagga
     1801 atcgctgttg gtatcgatat tggcgaagcg tatggcaata atgttggatt ttcatttaaa
     1861 ataagcaagt gcgattattt tttatccccc ataaaggtga agaataaata atatgaataa
     1921 taataacaat aataactttt tatgtccact gaaagtaaat ttttgaaagc cgtgaggctt
     1981 actaatcttt ttagcattct attcttagtc gtagaacttg ctgtttatat aaatatattt
     2041 caacgaatag cttttggaat cgcattaatt tcatatatac tagaaatagt tcttgaaaaa
     2101 aaatggagac aatttaagtg ggaaaatagt aagaaacaat ggttttttat cgttgttatt
     2161 ttctttttct tgctacagtt tatattcttg ccgtttga
//
LOCUS       DATDNM010000277         2097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_34496, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000277 DATDNM010000000
VERSION     DATDNM010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34496"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..167)
                     /locus_tag="VI413_04675"
     CDS             complement(<1..167)
                     /locus_tag="VI413_04675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Arm DNA-binding domain-containing protein"
                     /protein_id="HEY6913951.1"
                     /translation="MSKSTFKILFYLRKNQVNKDGKAGIMIRLSVNGEVSQFSSKLDV
                     EPEFWDVKLGK"
     gene            complement(463..536)
                     /locus_tag="VI413_04680"
     tRNA            complement(463..536)
                     /locus_tag="VI413_04680"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(500..502),aa:Asp,seq:gtc)
     gene            complement(781..1203)
                     /gene="ssb"
                     /locus_tag="VI413_04685"
     CDS             complement(781..1203)
                     /gene="ssb"
                     /locus_tag="VI413_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEY6913952.1"
                     /translation="MSVNKVILVGNVGKDPEVRYLDKNVAVANFTLATTERGYTMQNG
                     TQVPDRTEWHNIVAWRGLAELAEKYIRKGGQLYIEGKIQTRMWEKEGIKRYTTEIYAD
                     TIQLLGKKPESTEALSTVAAPPADAIQAPPPAEDDLPF"
     gene            complement(1406..1711)
                     /locus_tag="VI413_04690"
     CDS             complement(1406..1711)
                     /locus_tag="VI413_04690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dabb family protein"
                     /protein_id="HEY6913953.1"
                     /translation="MIKHIVFFGLADNAEGKSKMENAEIIKSELENLINFIPEIKKIE
                     VGINCPNAPKTNFDIALYSEFESLETLDIYQEHPEHKRVAAYIGKVRTSRAAVDYEV"
     gene            complement(1767..>2097)
                     /locus_tag="VI413_04695"
     CDS             complement(1767..>2097)
                     /locus_tag="VI413_04695"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6913954.1"
                     /translation="TAKNEPRATGQTTVIRIDGSTQNAWIKGDNDATTTVNTTTSGSE
                     TVSFSSTADGIFITILSGTNKIKLFALTGQLLFNGDLTQGRFLIQARKGIYFLKINNK
                     SFKVICK"
BASE COUNT          578 a          374 c          370 g          775 t
ORIGIN      
        1 atttttccga gttttacatc ccaaaattcc ggctctacat ccaatttgga actgaactgg
       61 gatacttcac catttactga taaacggatc ataataccag ctttaccatc tttgtttact
      121 tgattctttc tcaaatagaa gagaatctta aaggtacttt tactcataat actttctttt
      181 taattccaaa acaatggcgt aatttccatt gcaaaggaat gattaatatt cagtatatga
      241 gcagacactt aatacacaaa agacgacaaa tcagagactt gggttgaaaa tcgttactat
      301 tttagatagc tcttttttag taacgattta gtaacggaac tctgtctttt tttggctttt
      361 acttgacttt caggcgtcag tgataaataa taaaaaatcc cgtaaaacct tgattttacg
      421 ggatttgtct gagcttttcc accatttgtc tttggtgtta agcggtacgg acgggactcg
      481 aacccgcgac ctccgccgtg acagggcggc attctaacca actgaactac cgaaccagga
      541 ttttatttgt tttgcattac tttctaatgc ggtgcaaagg tacgggaaat tttcatttct
      601 gcaatagctt tgaatcgttt tttttgaatt ttcgggtaag tagatttctt tatatttaca
      661 actgtttgga aacgagagta actctaagta tgagattaac tttttttatt ggaaaatata
      721 ctctgagtta aaaaaaataa gccgtttcag tgttttgaaa cggcttattt gttatttcta
      781 ttaaaatgga agatcatctt cggcaggagg tggtgcctga atagcatcgg ctggtggcgc
      841 agctactgta ctgagagctt ctgtactttc tggcttcttg cctagcaatt gaattgtgtc
      901 tgcataaatt tcggtggtgt aacgtttgat tccttctttt tcccacatgc gggtttgtat
      961 tttcccttca atatacaatt gtcctccttt acggatatat ttctctgcta attcggccag
     1021 acctctccat gcaacgatat tgtgccattc ggtacgatca ggaacctgag ttccattttg
     1081 cattgtgtaa cctctttctg ttgttgctaa tgtgaagttt gcaacagcca cgtttttgtc
     1141 taaatatcga acttcaggat ctttccctac attcccgact aggataactt tgtttacaga
     1201 cataattctt agattttttt tgatgggtta atagttaatg ttaattcgct gtaaatatag
     1261 acataatttt tgtattagaa acaaaaaaag tcaattattt ttaattgtct taaaaatgat
     1321 tgaccaaatt ctgttttgat tgatttaata tttatataat cagctgattg tgtttgtatt
     1381 attccatccg ataaaaatat aaaaattaaa cttcataatc gaccgcggcg cgagaagttc
     1441 ttactttgcc aatgtaggct gccactcttt tatgttcggg gtgctcctga taaatatcaa
     1501 gagtttctaa actctcaaat tctgagtata aagcaatatc aaaatttgtt tttggtgcat
     1561 tcggacaatt aattccaact tcaatctttt ttatttccgg aataaagtta atcagattct
     1621 ccaattcgga tttgataatt tctgcgtttt ccattttcga ttttccttcg gcattgtctg
     1681 ccaaaccgaa aaaaacaatg tgtttgatca taagaaatat gtttatttta agtgtgaatc
     1741 agaaaaatgt actgcttccc agggtgttat ttgcagatta ccttgaagct tttgttgttt
     1801 atctttaaaa agtatatacc ttttctggct tgaattaaaa agcgtccctg ggtcaggtca
     1861 ccattaaaaa gcaactgtcc ggtaagtgca aataatttta ttttatttgt tccgctaagt
     1921 attgttataa atatcccatc ggctgttgaa ctgaaactaa ctgtttcgct gcctgatgtc
     1981 gttgtgttaa ctgttgtcgt tgcgtcatta tcgcctttta tccatgcatt ttgcgtagaa
     2041 ccatctattc gtataacagt ggtctgaccg gtagctcgag gttcattttt tgctgtg
//
LOCUS       DATDNM010000278         2655 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1316644, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000278 DATDNM010000000
VERSION     DATDNM010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2655
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1316644"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1324)
                     /locus_tag="VI413_04700"
     CDS             complement(<1..1324)
                     /locus_tag="VI413_04700"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HEY6913955.1"
                     /translation="MNKIKITLGLLLFSILGFASNDRPELKVSNIPDSLKKNAYAVIR
                     FSNTEYEYKSETNGLERKEISISILNKKGSEFSAFRCPCDKFRELKSFTGKLLDAEGR
                     LLRKFKMSDVSSTEYSQQLATDAKLYYFDCDLPTYPVTIIYEYEVGWKNGILVFPAFY
                     PQYAHNISVEKASYKLFLPDNMEYRSKAVNITPNPQKTTIKGTTCYEWEVKTLSAIES
                     ESFDPDLDTFVPLLYLSPSKFVYDGVSGIITDWNSMGKWEHGLLNGRDILSDNTRNQI
                     IEMTKNASSDREKVQIIYDYLGKTTRYVSIQLGIGGYQPMSAAEVCKTGFGDCKALSN
                     YMKSMLSAIGISSYYTGIRMDKKDKTLYGDYANFNQMNHVILQVPLHKDTLWLECTNP
                     RVPFGFIHNGISGHDALVDYEQGGKIVKLPDYPDSLNIEKNCTNVILNE"
     gene            complement(1341..>2655)
                     /locus_tag="VI413_04705"
     CDS             complement(1341..>2655)
                     /locus_tag="VI413_04705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HEY6913956.1"
                     /translation="TVSCQSRDIKFTANNVPALKNEPYVWCKNDFSSGVRFELNGTRF
                     PNSFYKSYTQTWENLEEAIKKETDFGINMKMSNPFKTEIKVLTDTVRNEKRKIELIYS
                     FVKKQISWNETYSFYGNKAKEAIKNKTGDNGQINMVLLSALKDAGINAYPILLSRRSK
                     GRIPYTYPSFDILNTFIVAAKTSDGNLYYMDGSAVYGGLNMLPTDLLVDRARVFEETI
                     TDKWVDLTKIAKNQSVYLIKSSIDKDGTLSGLLNTGYVNQLAYRYKSKYYNAKDSAEF
                     IENLETSSHIKIKNFTLEGKDTLSNIVKENINFTKETNLQGEYLYINPMIFMHLDKNP
                     FTQSERKLPIEFDYPYGLQISSIIEIPTNYKVEEIPKSVKITLPENAGRCLYQIIQVD
                     NTIQLNYKFDLTQTIFPQTDYNAIRDFYAQVAIKNAELIVLKKIN"
BASE COUNT          770 a          459 c          452 g          974 t
ORIGIN      
        1 cttcattcag aattacattc gtacagtttt tctcaatatt gagggaatca ggataatccg
       61 ggagttttac tattttacca ccctgttcat aatctactaa cgcatcatgt ccggatattc
      121 cattgtgtat aaaaccaaaa ggtactcttg ggttggtaca ttcgagccat aaagtgtctt
      181 tgtgtaatgg aacttgtaag atgacatgat tcatttgatt aaaattagcg taatccccgt
      241 aaagtgtttt atctttcttg tccattctga tgcctgtgta ataagaagat attccaatgg
      301 ccgataacat tgacttcata tagtttgaca acgctttgca atctccaaag ccggttttgc
      361 aaacttcagc cgcagacata ggctgataac cgccaatacc aagttgaatg ctgacatagc
      421 gggttgtttt cccaagataa tcatatataa tttggacttt ttcacgatcc gacgaagcat
      481 ttttagtcat ttctattatc tgattccttg tgttatcaga gagaatgtct cgtccattaa
      541 gaagaccgtg ttcccatttt cccattgaat tccagtcggt tattataccg gatacaccat
      601 cataaacaaa tttcgaagga cttaaataga gcagaggaac aaatgtatct aaatcaggat
      661 caaaactttc tgattcaata gcactcagag tttttacttc ccattcatag cacgttgtac
      721 cttttatagt agttttttgc ggattgggtg ttatatttac agccttgcta cggtattcca
      781 tattatcagg taaaaacaat ttgtagcttg ctttttcgac tgaaatgttg tgtgcatatt
      841 gaggatagaa tgcagggaaa actaatatgc catttttcca gccaacttca tattcgtata
      901 taattgtaac cggataagta ggcaaatcgc aatcaaaata ataaagttta gcatctgttg
      961 ccaattgttg cgagtattca gtgctgctaa catcggacat tttaaattta cgaagaagcc
     1021 taccttctgc atctaacaat tttccagtga aacttttcaa ctcacggaat ttatcgcacg
     1081 gacatctgaa tgctgaaaat tcggaacctt tcttgttgag aatagaaata gaaatttcct
     1141 ttcgttctaa cccatttgtt tctgatttat attcatactc agtattcgag aaacgaataa
     1201 cagcgtatgc attttttttt aatgaatcag gaatattcga aactttcaat tcaggtctgt
     1261 cgtttgaagc gaaacctaaa attgaaaaca ataataaacc aagagttatt tttatcttat
     1321 tcatatcaga ttttaatgct ttaatttatt ttctttagta cgattaattc ggcattttta
     1381 atagctactt gtgcataaaa atcgcgaatt gcattgtaat cagtttgagg aaaaatagtt
     1441 tgtgtcaggt caaatttata attcaattgt atggtgttat caacctggat tatttgataa
     1501 aggcatctgc cagcattttc aggcaatgtg atttttacag atttaggaat ttcttctacc
     1561 ttataatttg ttggaatttc tattatacta ctaatttgta acccatacgg ataatcaaat
     1621 tctatgggta atttccgttc ggattgagtg aatggattct tatctaaatg cataaaaatc
     1681 atcggattga tgtataaata ttcgccttgt agatttgttt ctttggtgaa gttgatattc
     1741 tcttttacta tatttgataa tgtgtctttt ccttcaagag taaaattctt tattttaatg
     1801 tggctgctag tttccagatt ttcaatgaat tctgctgaat ctttagcatt atagtatttg
     1861 gatttgtatc tgtatgccag ttggttgacg tatccggtat tcaatagtcc ggataatgtt
     1921 ccatccttgt caatagacga tttaatcaga tatactgact ggttttttgc aattttagtc
     1981 aagtctaccc atttgtcggt aatggtttcc tcaaacactc tggctctgtc aaccaataga
     2041 tctgtaggga gcatatttaa tccgccatat acggcagaac cgtccatgta gtataaattt
     2101 ccatcacttg ttttcgccgc aacaatgaaa gtatttaaaa tgtcaaatga aggataggta
     2161 tatggaatcc gaccttttga gcgacgacta agtaatatag gatatgcatt tatacctgca
     2221 tcttttaatg cgctaagcaa taccatattt atttggccgt tatctccggt tttatttttg
     2281 attgcttctt ttgctttgtt accgtaaaaa gaataggttt cgttccagct tatctgtttt
     2341 tttacgaatg aatagattaa ttcgattttt ctcttttcat ttctaacggt atctgtcaaa
     2401 acttttattt ctgttttgaa tggattggac attttcatat ttattccaaa atcggtttct
     2461 tttttgattg cctcttccag attttcccaa gtctgcgtat atgatttgta gaaactgttt
     2521 ggaaaccggg ttccatttag ttcaaaccgg acacctgaac taaaatcatt tttacaccaa
     2581 acatagggtt cgttttttag agcaggtaca ttgttagctg taaactttat atcacgactc
     2641 tggcaggata cagtg
//
LOCUS       DATDNM010000279         2391 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_34731, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000279 DATDNM010000000
VERSION     DATDNM010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34731"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..674
                     /locus_tag="VI413_04710"
     CDS             <1..674
                     /locus_tag="VI413_04710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HEY6913957.1"
                     /translation="LLKMATEAGLTNTEKKVGYTQNTNDADAEIIGKIIDCSPFLEMN
                     YQKKDGTIFEIKTHLIGSYNAENVLAAVTIGNFFGVTDQQIKTGLETYVPQNNRSQLT
                     ITKQNKLVVDAYNANPTSMRAAILNFAQMNVDAKTLILGDMLELGEQSSEEHQSVVDL
                     LQQNDFKNVMLVGPEFKKTQNSYICFDDVNELQPYIEKHPIANNYILIKGSRGIKLEK
                     ILSIL"
     gene            707..1603
                     /locus_tag="VI413_04715"
     CDS             707..1603
                     /locus_tag="VI413_04715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913958.1"
                     /translation="MDQKKRNLIIMIAGALIIAALAFAVFYFIRQANQKEAEVTEIVE
                     QMNFEKQQIEKEFTDMNQEFDGYTSNIHNDSLVKLLNDQKTKVQQLLDELRVTKSTNA
                     KRIAQLKHELATVRKVMIQYVNQIDSLNAANHILKTENVEVKRKFQAANETVQQLSKE
                     KESLHQVVSRASVMEVYNCSMTPLNNKGKKTSWFSQTANLQFNYTVAKNVTAQPGDKT
                     IYLRITRPDGDVLTKSPSNVFTYENKDIAYSASKTFEYTGDAKSDVIYWKVGEILPKG
                     NYRAEFFIDGNRVGSFSFAFEK"
     gene            1615..>2391
                     /locus_tag="VI413_04720"
     CDS             1615..>2391
                     /locus_tag="VI413_04720"
                     /inference="COORDINATES: protein motif:HMM:NF014628.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LUD domain-containing protein"
                     /protein_id="HEY6913959.1"
                     /translation="MSQAHKFTHDAEAIAFDVKHRNTIKFNISRYDTAVSKGMARYND
                     VEAAKTQAAAIKRDVLQNWSKYLLQFEETISARGVDVLWAKDAAEATTFIEKILREND
                     AKLLVKSKSMTTEEIELNETAERMGCESVETDLGEFIVQVAGERPYHIVTPAMHKSKG
                     DIAKLFNEKFGTPIDSTPEEMTEYVRQVLRKKYTTAQVGVTGANFLIADIGGISVTEN
                     EGNGLMSTAFPKVHIVIAGIEKIIPEMKQLGLFYPLLAAHG"
BASE COUNT          858 a          443 c          488 g          602 t
ORIGIN      
        1 acttgcttaa gatggcaacc gaagccggac ttaccaacac cgaaaagaaa gttggctata
       61 ctcagaacac aaacgatgca gatgccgaaa taattggcaa aataatcgat tgctcaccgt
      121 ttctggaaat gaattaccag aaaaaagatg gtacaatatt tgaaataaaa acacacctga
      181 taggctcata taatgctgaa aatgtgttgg ctgctgtaac tatcggaaac tttttcggag
      241 taactgatca gcaaatcaaa accggacttg aaacctatgt tccgcaaaac aaccggtcgc
      301 aactgaccat tacgaagcaa aataagctcg tggttgatgc ttacaatgca aatcctacaa
      361 gtatgcgtgc tgccatatta aattttgccc aaatgaatgt agatgcaaaa acgctcattt
      421 tgggagacat gctcgaactg ggagagcaaa gcagtgaaga gcatcaatcc gtggttgatt
      481 tactgcaaca aaatgatttt aaaaatgtta tgttggttgg cccggagttc aaaaaaacgc
      541 aaaacagtta tatttgtttt gatgatgtaa atgaactaca gccttatatc gaaaagcatc
      601 cgattgcaaa caactatatc ttaataaaag gctccagagg aatcaaactc gaaaaaatac
      661 tatcaatact ttaatactga attatataaa cgcataattt ccaattatgg accagaaaaa
      721 aagaaatctg attataatga ttgcgggagc tttaataatt gcagctctgg catttgccgt
      781 tttctatttt attcgccagg ccaaccagaa agaagctgaa gtgactgaaa tagtggaaca
      841 aatgaatttt gaaaaacaac aaattgaaaa agaattcacc gatatgaatc aggaatttga
      901 tggttacaca tcgaatatcc ataacgactc attggtaaaa ttgctgaatg atcaaaaaac
      961 caaagttcaa caattgctgg acgaattgcg tgtgacgaaa tcgaccaacg caaaacgtat
     1021 agcccaatta aaacatgaat tggcaaccgt gcgcaaagtc atgattcaat atgtaaatca
     1081 gattgactca ttgaacgctg caaatcatat tctgaaaact gaaaatgtag aagtcaaaag
     1141 aaaatttcag gctgcaaatg aaactgtaca gcaattgtca aaagaaaaag aaagcttaca
     1201 tcaggtcgta tccagagcct ctgtaatgga ggtttataat tgcagtatga cgccgctaaa
     1261 caataaaggg aaaaaaacaa gttggttttc tcaaactgcc aatttgcaat tcaattacac
     1321 agtggctaaa aatgtgactg cgcaacccgg cgataaaacc atttatttgc gaattacgcg
     1381 cccggatggc gatgtgctga ccaaaagccc atccaatgtt tttacttacg aaaacaaaga
     1441 cattgcctat tctgccagca aaactttcga atacaccggc gatgctaaga gcgatgtcat
     1501 ttactggaag gttggcgaaa tactaccgaa gggaaattat cgtgcagagt tctttattga
     1561 tggaaacaga gttggaagct tctcatttgc gtttgaaaag taataaaaag acacatgtca
     1621 caagcccata aatttactca cgatgcagaa gcaattgctt tcgatgtaaa acatcggaac
     1681 acgattaaat tcaatatctc gcgctacgat acagctgtga gtaaaggaat ggcgcgttac
     1741 aatgacgttg aggccgcaaa aacacaagct gcggccataa aacgtgatgt tttgcaaaat
     1801 tggagcaaat acttacttca atttgaagaa actataagtg ctcgtggtgt agatgtcctt
     1861 tgggcaaaag atgcggcaga agcaactact tttattgaaa aaattttgcg ggaaaatgat
     1921 gcaaaattgc ttgtaaaaag caaatcgatg actaccgaag aaattgaact caacgaaact
     1981 gcagaacgaa tgggttgcga atcggtagaa acagatttgg gtgaatttat tgtgcaggtt
     2041 gctggcgaac ggccttatca cattgttacc ccggccatgc ataagtcgaa aggtgatatt
     2101 gccaagcttt tcaacgaaaa attcggaacg ccgattgaca gcacacctga ggaaatgacc
     2161 gaatatgttc gccaggtgtt acgcaaaaag tatactacgg ctcaggtagg agttacagga
     2221 gctaattttc tgattgcaga cattggagga atttctgtaa ccgaaaatga aggaaacgga
     2281 ttgatgtcaa ctgcttttcc aaaagtacat attgtcattg ccggaattga aaaaattatt
     2341 cctgaaatga agcaactcgg gcttttctac ccactgctcg cagctcacgg a
//
LOCUS       DATDNM010000280         2547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_996109, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000280 DATDNM010000000
VERSION     DATDNM010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2547
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_996109"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1571
                     /locus_tag="VI413_04725"
     CDS             <1..1571
                     /locus_tag="VI413_04725"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6913960.1"
                     /translation="NETFRMIAKNGEIKECETTSTLIEFEGQWASFFTIHDVTDSKRM
                     QLELKESELKYKTLIENSQDGIFAIVEEKILFANNTFCKIVGYTAEELYNKPASSLVF
                     EEDRPRGLAISERRRQGDHSTVNDIFRFVAKDGSLREADVFSSVLELNGQVVSYITVH
                     DLTETRRMQEQLQQSEEKYRTVIDKATDGIVITQQGRLKFVNNSLCEMLQYQEDELIE
                     MPFINIVVEEDQQVMNDFHKRRMAGEDFTALYRSRIIRKDGKIITVELNARTSNYNGN
                     PAAFIIIRNITDRIKIENELQTAKNKLELLNRQLEKRVKESSESLTEARTQLINLQKE
                     NLQSQFDVLKQQVNPHFLFNSLNVLTSLIKLEPDLAEKFSEQLSKVYRYVLENKDNEL
                     VDLHTELNFLDAYIFLLNIRFVGKLKVNISIPDNRRGDQIIPLAMQLLIENAIKHNIM
                     SKSEPLTIDIFIDEDNFLNIVNNLQERPSQLVSTGVGLKNIQNRYLLLNNTKPTFEKT
                     NTHFIAKVPLVVLA"
     gene            1589..2005
                     /locus_tag="VI413_04730"
     CDS             1589..2005
                     /locus_tag="VI413_04730"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6913961.1"
                     /translation="MRIVIIEDEMFAARRLENMIREFDPTIEVAAKLESVKESIAWFK
                     SNPEPDLIFLDIHLDDNLSFAIFKEVSICCAIVFTTATDELAARAFQLKGIDYLLKPI
                     IQSDLIDMITKYRNQPKYFCPVNPNIFNDIINPMQP"
     gene            2002..>2547
                     /locus_tag="VI413_04735"
     CDS             2002..>2547
                     /locus_tag="VI413_04735"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6913962.1"
                     /translation="MRTIIIEDEEYAARRLENLIQECDPSIEIVAKLQSVKESVAWFR
                     SNPHPDLIFLDIQLEDDLSFAIFEQTQVQSKIIFTTAFDEYAIKAFKLKSIDYLLKPI
                     NKDELCQAITKYQKWDSEKNVLVDPVELRKLLLPNQPTFRNRFMVSVGEKLKTIYVED
                     IAYFFSTSGITFVVTNDKRQYS"
BASE COUNT          829 a          529 c          536 g          653 t
ORIGIN      
        1 tcaatgaaac attcaggatg attgccaaaa atggcgaaat caaagaatgc gaaactactt
       61 ccacgttgat tgaattcgaa ggacaatggg ccagtttttt caccatccac gacgtgacgg
      121 acagcaaacg gatgcagtta gaactgaaag aaagcgagtt gaaatataaa acactaattg
      181 aaaactcaca ggatggcatc tttgccatag tggaagaaaa aatcctgttt gcaaacaata
      241 ctttctgtaa aatagtggga tacactgccg aagaacttta taataaaccg gcatcgagcc
      301 tggtttttga ggaagaccgc ccacgtggac tggcaatcag cgaacgtcgc aggcaaggag
      361 accattctac agtgaacgat atttttcgtt ttgtagctaa agatggttcg ctcagggagg
      421 ctgatgtttt ttcatcggtg ctggaactaa acggccaggt ggtgagctac attaccgtgc
      481 acgatttgac cgaaacccgc cgaatgcagg aacagttgca gcaaagcgaa gaaaaatacc
      541 ggacggtgat tgacaaagct accgatggga tagtaattac ccaacaggga cgattgaaat
      601 ttgtaaataa ttctctttgc gaaatgcttc aatatcagga ggacgaactt attgaaatgc
      661 cattcataaa cattgtggtg gaagaagacc agcaagtaat gaatgatttt cataaacggc
      721 gaatggccgg cgaagatttc acagcgctgt atcgaagccg gattatccgc aaagatggaa
      781 aaattataac cgtggaatta aatgcccgca cctccaatta caatggaaat ccggctgcgt
      841 ttataattat caggaacatt accgaccgta taaaaattga aaatgaattg caaacagcta
      901 aaaataaact ggaacttctc aacagacagt tggaaaaacg cgtgaaagaa agctccgaaa
      961 gccttaccga ggcccgcacc caattaatca atctgcaaaa ggaaaacctc cagtcgcagt
     1021 tcgatgtgct gaaacagcag gtaaatccgc atttcctgtt caatagtttg aatgtgctga
     1081 cttcgctcat taaactggaa cccgacctgg ccgagaaatt ctcggaacaa ttgtcgaaag
     1141 tgtaccgata tgtgcttgaa aacaaggata atgagttggt tgatttgcat acagaactga
     1201 attttcttga tgcttatatc ttccttttga atatccggtt tgtcggaaaa ctcaaggtaa
     1261 atatcagcat tcccgacaat cggcgcggcg atcagatcat tccgctggcc atgcagttgc
     1321 ttatcgaaaa tgccattaag cataatatca tgtcgaaaag tgaaccatta accatcgata
     1381 tttttattga tgaagataat tttctgaata ttgtaaataa tcttcaggaa cggccttcac
     1441 aactggtttc aacgggagta ggactgaaga atattcaaaa ccgttatttg ctgctgaaca
     1501 acaccaaacc gactttcgaa aaaacaaaca cacattttat tgccaaagtg ccgttggtag
     1561 ttttggcata aacaaaaaac atacaacgat gagaatagta attattgaag atgaaatgtt
     1621 tgctgcacgc aggttggaga atatgatccg tgagtttgat ccaaccattg aagtggccgc
     1681 caaactggaa tcggtaaaag agtcgattgc ctggttcaaa agcaatcctg agcccgattt
     1741 gatttttctg gatattcatt tggatgacaa cctgagtttt gccattttta aagaggtttc
     1801 catctgctgt gccatagtgt ttaccacggc taccgacgaa ttggctgccc gcgcttttca
     1861 actcaaaggc attgattacc tgctcaagcc aattattcaa tccgatttga ttgacatgat
     1921 taccaagtac cggaatcaac caaagtactt ttgccccgta aatcctaata tttttaacga
     1981 tataattaac cccatgcaac catgagaaca atcattatcg aagacgagga atatgctgcc
     2041 cgaaggctcg aaaacctgat acaggaatgc gatccgtcca tcgaaattgt agccaaattg
     2101 caatcggtga aggaatctgt agcgtggttt aggtctaatc cgcacccgga tcttattttt
     2161 ctggacattc aactagaaga cgacctgagc tttgccattt tcgaacaaac gcaggtacaa
     2221 tcgaaaatca tttttaccac tgctttcgac gaatatgcca tcaaagcttt caagctcaaa
     2281 agcatcgatt atctgttgaa accgataaat aaagacgaac tttgccaggc cattaccaaa
     2341 taccagaaat gggacagcga aaaaaacgta ttggtcgatc cggtagaact gcgcaagctt
     2401 ttgctaccaa accagcccac attccgtaac cggtttatgg tgtcggtagg tgaaaagctc
     2461 aagaccattt acgtggaaga cattgcttat ttcttctcca ccagtggaat tacttttgtg
     2521 gtaaccaacg acaagcggca atactcg
//
LOCUS       DATDNM010000281         6902 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1424034, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000281 DATDNM010000000
VERSION     DATDNM010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6902
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1424034"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1381
                     /locus_tag="VI413_04740"
     CDS             <1..1381
                     /locus_tag="VI413_04740"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY6913963.1"
                     /translation="NQITMLAEKIIKSIPEVESVYTNVGTSSTTTKNNITTINVKMID
                     KTKRKMGVQECASLTKEKIMQQIPGVRARATPASMSGGGAQEPIQLIVQGADYNKVRE
                     TAAMILNTIHQVPGTSDAKYSIDDPRQEVQVKLDREKMSALGLSVNDVGSTLRTALNG
                     NDNSKFTEGNYEYKIRIGIDNFDRTKSDDVSKLTFVNKKGELIELRQFAEIGYGLGPS
                     ALERTDRISSITVKSNVVGRPSGTVGSEIEKAIAGKIPAGITIKRSGMMDQQDSAFGS
                     LGFAFLAAIVLIYLIMVVLYNSLTDPLIVLFSIPLAMIGAFLALALTMNNLTIFSIIG
                     LIVLIGLVAKNAILLVDFTNKIKQEEGLSTFNALIEAGKDRMRPILMTTFAMIFGMLP
                     IALGSGNGAEMKNGMGWVIIGGLASSMILTLVVVPVVYYIFDRIGVKLHQRSKMKMDA
                     DGQLEAELV"
     gene            2000..2869
                     /locus_tag="VI413_04745"
     CDS             2000..2869
                     /locus_tag="VI413_04745"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEY6913964.1"
                     /translation="MKFKIIILGSLIIAGVLNTIFTQGSIHLFHSSLVPVNFLIIGNI
                     MKDLIVLLIVLLSTSLLHSISQRQQILLENERLIADNIRIRYEVLKNQVDPHFLFNSL
                     NTLDGLIGMDNDRAHEYVQNLSQVFRYAIGNKEIVHLDEELDFTESYAHLMKIRYGEN
                     IQIQYNIAEKYKIWYIMPISLQLLVENAIKHNVISTKHPLVITIETTPNDTIRVLNTI
                     QLKKEAEQGEGIGLANLTERYKLLFQKEVSITITDIFCVEMPLIKELEDTKFKNNQHE
                     MSPVQAGRIQCDF"
     gene            2886..3647
                     /locus_tag="VI413_04750"
     CDS             2886..3647
                     /locus_tag="VI413_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009017290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEY6913965.1"
                     /translation="MKAVIIEDELVATQNLQRLISQLADDIQVIAVLQSVEESIDWFS
                     LNPAPDVLFMDIHLADGSAFSIFEKVKIPCPIIFTTAYDEYALKAFEVNSVDYLLKPI
                     NQKNMERALDKLRRVLTTKIDNADMISNVLAAFRETKKVYKSNFLIPHKDKFIPLSIQ
                     KIACFYTENKMVKIITDDNQTFSMDSSLEDLYTQLDPSQFFRANRQYIISHKAIKDIS
                     IWFGSKVSINLYVTLPEKIIVSKARVSEFKAWYTT"
     gene            complement(4066..5589)
                     /locus_tag="VI413_04755"
     CDS             complement(4066..5589)
                     /locus_tag="VI413_04755"
                     /inference="COORDINATES: protein motif:HMM:NF019157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HEY6913966.1"
                     /translation="MTTKTLLCIILLLLINGVYGNAQNLDNIKDLKLPTATITKIEAH
                     TDYLCVSIISKPTPSSNIGIEIWLPKGKWNERFLGTGNGGGGGKISRELLSAGIKRGF
                     AVANTDLGTSPNANSVIAYPERWADFGYRATHEMTVISKYIIEKYYQRAPKYSYFIGC
                     STGGQQALMEAQRFPEDYNGIIAGAPANNRTHLHASFLWNYIATNKEPASHFRPEQLN
                     KITAGVLKTNGGKDGGAPTDNFLTDPRLAAGCGCLDTILSKEQSETMKKIYAGPANPV
                     TGEKIYTSFPLGTENERTGLLLQQSEEAQDLFYQFKWLWGADYDLLSFDFNKDMKRMD
                     RELGPILNANNPDLNPFMKKGGKLIMYTGTYDPLVPFQDAVNYYERVIEKQGNLKKTQ
                     TFFRYFLIPGMAHCGGGPGLNDFGQGLPSDIPLDEERDILTALMNWVEKEKAPQRMIV
                     TSYNESKREKGIRLSRPVFPYPEFPQYTGGDPALLSSYIARTHERGKVLKPAHKYLK"
     gene            complement(5675..>6902)
                     /locus_tag="VI413_04760"
     CDS             complement(5675..>6902)
                     /locus_tag="VI413_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008860680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6913967.1"
                     /translation="NAVLNILRIKYRLGLFENPYVDEKAVSTIYSAEHLQKARQAAVE
                     SAILLKNTNNILPLKLTAKIAIIGPMANAAHDQLGTWSFDGDKNKTVTPLKALQTEYA
                     NINYVYEPGLTYSRDKSINFYKAIKAAESADVAVVFVGEEAILSGEAHSLSNINLIGQ
                     QSELIRAIKSTGKPVVMVVIAGRPLTIERDLPYVDAVLYNFHPGTMGGLAIMDLLLGK
                     ENPSGKLPVTFVREVGQIPMYYNHNNTGRPAQDWIPALDDIPLEAPQTSLGNTSFYLD
                     SGKNPLFPFGFGLSYSKFEYSNIHLSATEITVDGYLTAKATIKNTSNVDGYEVVQLYI
                     RDLVGSIARPVKELKGFQKIFIKAGESKTVEFNLKATDLAFYGRDLVKKTEPGDFEIW
                     ISKSSEEGLKGKFSVK"
BASE COUNT         2022 a         1389 c         1366 g         2125 t
ORIGIN      
        1 taatcagatt accatgctgg ctgaaaaaat tatcaaaagc attcctgaag tggaaagtgt
       61 gtacaccaat gttggtacct cgtcaaccac taccaagaat aatattacca ccattaatgt
      121 gaaaatgatt gacaaaacca aacgtaaaat gggtgtgcag gaatgtgctt cgttgaccaa
      181 ggaaaaaatc atgcaacaga taccgggtgt aagggcgcgt gctactccgg cttccatgtc
      241 gggaggtggt gctcaggaac ctattcagtt gattgtgcag ggtgccgatt acaacaaagt
      301 gcgggaaact gctgccatga ttttgaatac cattcatcag gtgccgggaa catccgatgc
      361 caagtattcc attgacgatc ctcgtcagga agtgcaggtt aagcttgacc gtgaaaaaat
      421 gtcggccctg ggattgtcgg taaacgatgt gggttctaca cttcgtacgg ctttgaatgg
      481 taacgataac tctaagttta cagaaggaaa ctacgaatac aagattcgca ttgggattga
      541 taattttgac cgcaccaaat cggacgacgt atccaaactc acttttgtga ataaaaaagg
      601 agaactgatt gagttgagac aatttgcaga aattggttat ggcttaggcc catcggcgct
      661 ggaacgtacc gaccgtatct cgtccattac cgttaagtct aacgttgttg gccgtccttc
      721 gggaacagta ggttcggaaa ttgaaaaagc cattgcagga aaaattccgg caggtataac
      781 cattaaacga agtgggatga tggatcagca ggattctgct ttcggtagtc tgggatttgc
      841 ctttctggca gctattgtac tgatttacct gattatggtg gtgctttata actcgcttac
      901 cgatccttta attgtattgt tttccattcc gttggcaatg attggagcct tcctggcttt
      961 ggcgctcacc atgaataacc tgaccatttt cagtattatt ggtttgattg tgctcatcgg
     1021 gctggtagcc aagaatgcga ttctgttggt ggacttcacc aataaaatca agcaggaaga
     1081 aggcctgagt acattcaatg ctctgattga agccggtaaa gaccgtatgc gtccgatttt
     1141 gatgactact ttcgccatga tttttggtat gttgccaatt gcacttggct cgggcaacgg
     1201 agctgaaatg aaaaacggca tgggttgggt aattattggt ggtctggcca gttcgatgat
     1261 tctaacgctg gtagttgtac cggttgtata ttacattttc gaccgcattg gagttaaatt
     1321 gcaccaacgt agcaaaatga aaatggatgc tgacggacaa ttggaagccg aattggtgta
     1381 aactcgaatt ttaccaacga ctatgctaca ggtggcatag tcgttggtaa aatttaatgt
     1441 tgtatttatt tgccacgaag tggctgaatt taaataaccg tgggtgaagc ccacggaatt
     1501 aatgaaaaaa aattagacag ccacgaagtg gttgaataac attttcctat gttcagccac
     1561 cttcggagct ggtattgtcc gttcatttca gccgtgggct tcacccacgg ttattcaaat
     1621 taaacccttt cagggctttg cgttatatgg aaatatgaca ttgaattata acatctactt
     1681 agtcgttgtt tttttgtact tttatcatcg aaattaattt acaatttaac aatacacacc
     1741 aatcaatctt aaatactcaa tcactcaggc tatgagacac agatctttta atcccttttc
     1801 aaacatactg gccctccggt tatccataat attaagtata tttctggatt ctgtattgct
     1861 tttaggcttt ttatatagcc ataaattaga gcattcaatt gaaatgcgag tggtatatat
     1921 gttcttctct gatattattt tattctattc attgtatggt ttcagtttca aaataataca
     1981 actgaatata aagaagaacg tgaagttcaa aattatcatt ttggggtcac tgattattgc
     2041 cggtgtactt aatacgattt ttacccaagg ttccattcat ttattccaca gcagcctcgt
     2101 accggttaac tttctgatta tcggaaatat catgaaagac cttatcgtgt tgcttatcgt
     2161 gttgttgtca acatcattgc tccattctat cagccagcgc caacagatat tgcttgaaaa
     2221 tgaacggctt attgcagata atatccgcat ccggtatgag gtgcttaaaa atcaggttga
     2281 ccctcatttc ctgttcaact cgctcaatac gctcgatggg ttaattggaa tggacaacga
     2341 cagagcgcat gaatatgtcc agaatttatc gcaggtattc cgctatgcca ttggtaacaa
     2401 ggaaatagtt catcttgatg aggaactgga ttttaccgaa tcgtatgccc atttaatgaa
     2461 aatacgttac ggcgaaaata ttcagataca atacaatatt gccgaaaagt acaagatctg
     2521 gtacattatg cctatcagcc tgcaattgtt ggttgagaat gccataaagc ataacgtaat
     2581 cagcaccaag catccgttgg taattactat tgaaaccacg ccgaatgata ctatcagggt
     2641 gctgaatacg attcaactga aaaaagaagc agaacagggt gaaggaatag gcctggcaaa
     2701 cctcaccgag agatataaac tgttgttcca gaaagaggta tcgatcacca taacagatat
     2761 tttttgtgtg gaaatgcctt tgataaaaga actggaagat actaaattca aaaataacca
     2821 acatgagatg agtcccgttc aggcaggacg aattcaatgc gacttttaaa atcaattatt
     2881 atcgtatgaa ggcagtaata atagaagacg agctggttgc aacccagaat ttacagcggt
     2941 tgattagcca gttggctgat gacattcagg tgattgccgt tttgcagagt gtagaagaaa
     3001 gcatcgactg gttttcgctg aacccggctc ccgatgtgtt attcatggat atccatttgg
     3061 cagatggttc ggctttttcc atttttgaaa aagtaaagat tccgtgtcct ataattttta
     3121 cgacggctta tgacgagtat gcactgaaag cctttgaagt aaacagtgtc gactatttgc
     3181 tcaagcctat taaccagaaa aatatggagc gggcactgga caagctacga agggtgctga
     3241 ctacaaaaat cgataatgca gacatgatat ccaatgtgct ggctgctttc agggaaacga
     3301 agaaggtcta taaatcaaac tttttaattc cccataaaga taagtttata ccattatcga
     3361 tccagaagat agcctgtttt tataccgaaa acaaaatggt aaaaattatt acggacgata
     3421 accagacctt tagtatggat agctcgctcg aagatttata tacccaactt gatccctcgc
     3481 agtttttcag ggctaaccgt caatatatta tttcgcacaa agcgatcaag gacatctcca
     3541 tctggtttgg aagcaaagtt tccatcaacc tgtacgtgac cctgcccgaa aaaattatcg
     3601 tcagcaaagc acgcgtatcg gaatttaaag cgtggtatac cacttgatgt tgatttacgt
     3661 tcagttttaa ttttctaaaa gaaagaatgc ctgcactcag caatgagtca ggcattcttt
     3721 ctttttataa actacacgct ataaactctc cgctcggctc tgccgcttgg cttgccaaga
     3781 attgtccact cttttcaatt ctggttgtac ttttttgttt ctctttcaac tgctttaata
     3841 atacgtacac tgaactcaac cggcagaatt tttttataga aacccgcccc gaatggaccc
     3901 gccgcggatt ctcaataatg ctatttttaa ttaaacaggc cagcctgaga aaatcagtct
     3961 gacctgccac cttctgaaca acaccaaaaa ctaatgccta tattctacat aacaatatta
     4021 ttaaaaacga ctggtgtgat gttttttcaa ataataagca aatcattatt tcaaatactt
     4081 gtgagcaggt ttcaatactt tccctctttc atgagttctt gctatgtaac ttgatagcaa
     4141 tgcgggatct cctcctgtat attgaggaaa ctccgggtaa gggaaaaccg gacgacttaa
     4201 ccgaattccc ttttcccgct tactttcatt gtaactggta acaatcattc tttgaggtgc
     4261 tttttctttt tctacccaat tcattaaagc tgtcaaaata tcacgctctt catctaaagg
     4321 gatgtcagaa ggcaaccctt gtccaaaatc attcaatccc gggcctcctc cacaatgagc
     4381 cattcccgga atgaggaaat agcgaaagaa tgtttgtgtt tttttcaggt taccttgctt
     4441 ttcaattacc cgctcgtagt agtttactgc atcctgaaat ggaacaagcg gatcatatgt
     4501 tcctgtgtac ataatcagtt ttcctccttt tttcatgaaa gggtttaaat cgggattatt
     4561 ggcattcaaa attggaccta attcccgatc cattcttttc atatctttat taaaatcaaa
     4621 gctcaataaa tcataatctg caccccacaa ccacttgaac tgataaaata aatcctgagc
     4681 ttcttcactt tgctgtaaga gtaatccggt tcgctcgttt tcagttccaa gaggaaaaga
     4741 agtgtatatt ttttcacccg taacaggatt agcaggacct gcataaatct ttttcatcgt
     4801 ttcgctttgt tctttggaaa ggattgtatc caaacaacca caaccagcag ctaaacgcgg
     4861 atctgtaaga aaattatctg tcggagcacc tccatcttta cctccattgg ttttcaacac
     4921 tccagctgtt attttattga gctgctctgg tcgaaaatga gaagcaggct ctttatttgt
     4981 tgcaatataa ttccacagaa agcttgcatg taaatgagtt cggttatttg caggtgctcc
     5041 cgcaataatt ccattgtaat cttccggaaa gcgttgagct tccattaatg cttgttgccc
     5101 accggtagaa cagcctataa aataggaata tttgggagca cgctgatagt atttttctat
     5161 tatatatttc gaaatcacag tcatttcatg agtagcccga taaccaaaat cggcccatct
     5221 ttcaggatag gcaatcacgc tgtttgcatt aggagatgtt cctaaatctg tgttagcaac
     5281 agcaaaacct ctttttattc cagcagatag taattcccga cttattttgc cgccaccacc
     5341 gccatttccg gttcccaaaa aacgctcatt ccactttcct ttgggtagcc atatttctat
     5401 cccaatatta gatgaaggtg ttggtttcga aattatggac acacataaat aatctgtgtg
     5461 agcctcaatt ttggttattg ttgcagttgg cagtttcaga tccttgatgt tatctaaatt
     5521 ctgggcatta ccatagactc cattaatcaa tagaagcaga ataatacata ataaagtttt
     5581 tgtagtcatt caatcaaagc tttagattgt agtctgtttt tacaaagaaa acacttatag
     5641 tctaaattca ctacagttca ttatttttca aagattattt tacggagaac tttcctttta
     5701 atccttcctc actacttttt gaaatccata tttcaaaatc acccggctca gtctttttta
     5761 ctaaatcacg tccataaaaa gccaaatctg tggcttttaa gttgaattca acagttttac
     5821 tttcaccagc tttgataaat atcttttgga aacctttcaa ctcttttacg ggacgagcga
     5881 tagaaccaac taagtcacga atataaagct gaaccacttc ataaccatcc acattacttg
     5941 tatttttgat agttgctttg gcagtaagat aaccatctac tgtaatctct gtagctgaaa
     6001 gatgtatgtt tgagtattcg aacttactat atgacaatcc aaaaccaaat gggaaaagag
     6061 gattttttcc agaatcgaga taaaaagaag tattaccaag cgatgtttgc ggagcttcca
     6121 gcggtatgtc atccagtgcc ggtatccagt cttgagccgg tcggcctgtg ttgttatggt
     6181 tataatacat aggtatctga cctacttcgc gaacaaatgt aacaggaagt tttccacttg
     6241 ggttttcctt accgagtaat aaatccataa tggctaatcc gcccatagtt ccgggatgga
     6301 aattataaag tacagcatct acatacggta aatcacgctc gatagtgagg ggacggcccg
     6361 caattacaac catgacaaca ggtttcccgg tacttttaat agccctgata agctccgatt
     6421 gttgcccaat gaggttgatg ttagatagag agtgtgcttc gcccgaaaga atggcttctt
     6481 cgcctacaaa aacgactgcc acgtctgcag attctgcggc tttaatagct ttgtaaaagt
     6541 tgatactttt gtcgcgtgag taagtgagcc caggttcata tacataattg atatttgcat
     6601 actctgtttg aagtgctttt agtggtgtaa cggttttgtt tttgtcgccg tcgaacgacc
     6661 atgttcccag ttgatcatgt gctgcattgg ccatggggcc tataatggca attttggcag
     6721 taagttttaa tgggaggatg ttgtttgtat tcttcaataa gatagccgac tctacggcag
     6781 cctgccgggc tttttgtaaa tgctctgctg aataaatagt cgatacagct ttttcatcaa
     6841 catacggatt ctcaaaaagt ccgaggcggt atttaatacg caggatattc agaactgcat
     6901 ta
//
LOCUS       DATDNM010000282         5696 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_889314, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000282 DATDNM010000000
VERSION     DATDNM010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5696
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_889314"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..354)
                     /locus_tag="VI413_04765"
     CDS             complement(<1..354)
                     /locus_tag="VI413_04765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009126609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913968.1"
                     /translation="MSLKKSIIVVICAISLSACSHKTWQITGQSSTFIPIDSKTEALA
                     DKNYETWLQPVKQKIDAEMSVVIGQAAETMRGHAPESLLSNLSADIYRKSATEFLGEK
                     VDISVVNLGGLRTVIP"
     gene            542..1834
                     /gene="tyrS"
                     /locus_tag="VI413_04770"
     CDS             542..1834
                     /gene="tyrS"
                     /locus_tag="VI413_04770"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEY6913969.1"
                     /translation="MNFIDELQWRGMIHTQMPGTEEQLAKEMTAAYVGIDPTADSLHI
                     GHLVSVMMLKHFQRAGHKPIALVGGATGMIGDPSGKSAERNLLDEAALRHNQECIKEQ
                     LKKFLDFDSDAPNAAELVNNYDWMKDYSFLNFIRDIGKHITVNYMMAKDSVKKRLAND
                     SNVGMSFTEFSYQLLQGYDFLHLYQNKNCKLQMGGSDQWGNITTGTELIRRKTGGEAF
                     ALVCPLITKADGGKFGKTESGNVWLDRRYTSPYKFFQFWLNVSDADAEKYIKIFTAIG
                     KDEIAGLVAEHAQAPHLRILQKRLAQEVTIMVHSEEDYNAAVEASNILFGNSTSEALK
                     KLDEDTLLAVFDGVPQFTISKVALESGVKAIDLLTETAAVFPSKGELRKLVQSGGVSI
                     NKEKLENQDEVLNGSKLLNDKYLLVQKGKKNYYLLIAE"
     gene            1931..2004
                     /locus_tag="VI413_04775"
     tRNA            1931..2004
                     /locus_tag="VI413_04775"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1963..1965,aa:Gln,seq:ttg)
     gene            complement(2264..2629)
                     /locus_tag="VI413_04780"
     CDS             complement(2264..2629)
                     /locus_tag="VI413_04780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913970.1"
                     /translation="MKSFMQMTGSMTMVSMYTIQGSDHVIIRTKGGPNKYQIKTKPQF
                     EKVRCNNSEWSWCTKMGSQIRWSFQNMNRMEDYPVTGGCDTAALHRHRVWKARLWKYY
                     RTGEICRHRKNCEGGIKNL"
     gene            4210..>5696
                     /locus_tag="VI413_04785"
     CDS             4210..>5696
                     /locus_tag="VI413_04785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913971.1"
                     /translation="MKKFFTFLILVLPLSVFGQVTYTFDSGGNGYYDGTTWTNLSLYN
                     GGSVGTANTVATTPAGTTILPSSVFHPTLYNSNASSADLTAIPTSNDCEVVWTDYLNV
                     ATDGIKSGMILRAQSSVTAAYSTGTRPGYYFLAQHSASGQVRFRILTLNAALGSATEL
                     TVPFAAVNIPGYTTGPLYLKAKVKGTALIFSYSTDKINWTVGGTGTSSTYTSGTVQIA
                     WGYGGGSPIDAYIDDVTFTNLDVTSVKLVGDDKYLYTGAEQGPSTSTTAFFTSTPIVT
                     YKYKGIGSTTYDESVTAPSAAGKYIATVDATYNIQNAKDTLAYEIYTPNTENSYSYTF
                     SDNVGSVPAGITYPVATTANGSGVGYVQFITGRMLPAASPYFTGYKTTGKMFVPTTGG
                     KLAGTTVANLTKIPSSSNYSLVWKEYYSAASSKKGFLLQGQADTCAYAVGLKKGYLFS
                     VYNSGTNTELRIYTVFASGAVSNGLGYPVANNISVPTDPGVNVAR"
BASE COUNT         1748 a         1044 c         1134 g         1770 t
ORIGIN      
        1 gggaataaca gtgcgtaatc cgcccagatt caccacagaa atatctactt tttcacccaa
       61 aaattcagta gctgacttac gatatatgtc tgcacttaga ttggatagca ggctttcagg
      121 tgcatgaccg cgcatagttt cagctgcctg gccaataact acactcattt cagcatctat
      181 tttttgtttt accggctgta gccaggtttc atagttttta tcggctaaag cttctgtttt
      241 gctgtcgatg ggaatgaatg tggaagattg tcctgttatt tgccaggttt tatgactgca
      301 ggccgatagt gaaatagcac agatgactac tattattgat tttttgagac tcatttttga
      361 atgatatatt tggagaaaat taaaacgaaa gtacagaaat aaattaatcc gaccaagttg
      421 cggttgttta ttcaactgcg ataattggct caacgttttg ttattgttcg taaacctaaa
      481 aagtagtatc tttgcacgtt caaaaaaaag ctgataataa ataaaaaaca cgatatagaa
      541 catgaatttt atcgacgaac tacaatggcg cggcatgata cacactcaaa tgccgggtac
      601 tgaagaacaa ctggcaaaag aaatgactgc cgcttatgta ggtattgacc caacagccga
      661 ttcgctccac attggtcacc tcgtgagtgt aatgatgttg aaacatttcc aacgtgcagg
      721 gcacaagccg attgcgctgg tgggtggtgc taccggtatg attggcgatc cgtcagggaa
      781 atcggccgag cgtaatttgc tggatgaagc tgcgctacgg cataatcagg aatgtatcaa
      841 agagcagttg aaaaaattcc tcgattttga tagtgatgcg ccaaatgcag ccgagttggt
      901 aaataactac gattggatga aggactactc gttcctgaat tttatccgtg atattggcaa
      961 gcatattact gtcaactaca tgatggctaa agactcggta aaaaaacgtc ttgccaacga
     1021 ttcaaatgtg ggtatgtcat tcaccgaatt ttcgtaccag ttgttgcaag gttacgattt
     1081 cttgcattta tatcaaaaca aaaactgcaa actgcaaatg ggaggttcgg accaatgggg
     1141 gaatatcacc accggaactg aactcattcg ccgcaaaaca ggaggtgaag cgtttgcgtt
     1201 ggtttgccca ctgattacca aagccgatgg tggtaaattc ggaaagacag aaagcggaaa
     1261 cgtttggttg gatcgtcgtt atacttctcc ctataaattt ttccagttct ggctgaatgt
     1321 aagcgatgct gatgctgaaa aatatattaa gatatttacg gccattggca aagacgaaat
     1381 tgctggtttg gtagctgaac atgcacaggc accacattta cgtattcttc aaaaacgcct
     1441 tgcgcaggaa gtaaccataa tggttcactc cgaagaagat tacaatgctg cggttgaagc
     1501 ttcgaatatt ttgtttggaa attctacttc tgaagcattg aaaaaactgg acgaagatac
     1561 gttgcttgca gtgttcgatg gcgttcctca gttcactatt tcgaaggttg cgcttgaatc
     1621 gggcgttaag gctatcgact tattaactga aactgcagcc gttttcccgt caaaaggtga
     1681 attgcgcaag cttgtacagt cgggtggtgt gagtattaac aaagaaaagc tcgaaaacca
     1741 agatgaagta ttgaatggct caaaactcct caacgacaaa tatttattgg ttcaaaaagg
     1801 caagaaaaac tattatttgc tgattgcaga ataagccaaa taaagcaaag tgggaataat
     1861 tttccaaaaa cattttggga aaaagaaaaa agtcgtatct ttgcaccgct ttagaaataa
     1921 ggcctacgat tgtctcatgg tgtaatggta gcactgcagt ttttggttct gcctgtccaa
     1981 gttcgaatct tggtgagaca accaaatcac acggttgaag ttcagcaatg aatttcaacc
     2041 gttttttcaa ccttttaatt tgtcaggaca aaaatatttt tgtaattttg acacgcaaaa
     2101 gcatttcaga cgccagaacg ctgaaataaa tttctcgaaa tactgtctta tggtgtaatg
     2161 gtagcactgc agtttctgga tctgcctgtc taagttcgaa tcttagtaag acaactaaat
     2221 cgcccgatta tccttctgat agtcgggcga ttttttgttt tgattacagg ttttttatcc
     2281 caccttcaca atttttcctg tgcctgcata tttcaccggt tcggtaatat ttccatagtc
     2341 ttgctttcca aactctatgc ctatgcaaag cagcagtgtc acatcctcct gtcaccgggt
     2401 aatcttccat tcggttcata ttttgaaacg accaacgtat ctggctgccc attttggtgc
     2461 accagctcca ttcgctgttg ttgcaccgca ccttttcaaa ctgaggtttg gttttaatct
     2521 ggtacttgtt tggtccgccc ttggtgcgga tgataacatg gtcgctgcct tgtatagtat
     2581 acatgcttac catggtcatg gagccggtca tttgcatgaa gcttttcatt agagccctaa
     2641 atatctctct tctgtttttg agttgtttta attatatagg ggcctccttt gggtcatgtt
     2701 cgtatcacgt tatccatata aaggtatata aataattcaa aacaattata tgaaactcct
     2761 ttaatgtata gcattaatga taaggcttat atatgggata tctaagggaa atagatagga
     2821 tatagatagc ttattagata acatgatacg aatatgctac ggcaatgaca ctaacgaata
     2881 ccgaagaaag ggtgggtaag agatgactca gagaataagg aaggggaaag gtcgaattcg
     2941 gtgagataag taatagatca aaagaagaca ttcaacaatt cctatccaaa cctaaaaacg
     3001 aaaaagcact cgaatatctt agaaataaat gatgacttct caataaatta aaatcaatct
     3061 cataccctag taagataata atgaatagat tgtaacccat tgatattcaa atcgaaaatc
     3121 aagggttttc ttctattttg acaatttaca gcaaaattac tctgctactc aaaccgggga
     3181 tcaacaggaa aagttgtgtt tcgcttttca aaatagtttc gtgatgcgat tgaatgatcc
     3241 ttgctacaat tccaacggag agaaactgag ctttgtcgta tcattcagaa agttctgtga
     3301 atgtgacact gttgagtttt gcctgatgat aaattacccc aaattggagg gataaatagc
     3361 acgatatctt taaatccgga taaactatat aagcatgtaa tgagccttat acctttttgc
     3421 tgcaagcagg ttggtatata tctataacac tgttgataac agagggttgt ggtagatatt
     3481 tgtattctat tcaacaggca atacttcatc atgggtacct aagctattaa gtcaccctga
     3541 tataaggctt gtctatttaa gccataattg ccgctttatt ttctcctgat aatcaagtta
     3601 tcgcaatcac acctcaatgc tcatcacaga ctgtctacaa aatcttaccc ttgttttgtc
     3661 tggaaatata agcaaaaggc ttagtagctc ttattctaaa ctgcttaact ttgtttcaac
     3721 ttttacaaaa tagaattatc gcatcttaat taaaaacaca acttttccga ttgagttcaa
     3781 atcggtcgct gctataagac tatttaaaag tgtacttcac gattttgcgt gccacctttc
     3841 acctgacttt tgccggagtg tttaaaacgt ccctgattaa tcgattgaac tggttttata
     3901 cccgtgtctc aacattggaa taacgaatcg attgacaatg aatcaatgaa aaagattttg
     3961 atttgattgt tgaccaacaa ttatatataa atgacttgtt tttatctatt tgtagaagct
     4021 ttatatctaa taatgtaaaa tgatttgttt gtctgcagaa tatctttgcc gatgcctttt
     4081 agaatgaatt ttagagaaat agaactcatt ccagatcata aagaataata gttgcgaatc
     4141 agaatacgta gtctgaagca catttgttat agatatcaat ttactactaa ttttaaattt
     4201 atgaaaacaa tgaaaaaatt ttttactttt ctgattttag tgctcccgct atcggtattt
     4261 ggtcaggtaa cttacacatt cgattcgggt ggaaatggct attatgatgg tactacatgg
     4321 actaatttgt cactgtacaa tggtggctca gttggaactg caaataccgt tgcaacaact
     4381 cctgctggaa caactatatt gcccagttct gtttttcatc caactcttta taattctaat
     4441 gcttcttctg cagaccttac agctattcca acttcaaatg attgcgaagt tgtatggaca
     4501 gattatttaa atgttgctac cgatggcatt aaatcaggga tgattttgag agctcaaagt
     4561 tcggttacag ctgcttattc tacaggcaca aggcctggtt attactttct ggctcaacac
     4621 tcagcatcag gacaagtgag atttagaatt ttaaccctaa atgcagcttt gggaagtgca
     4681 accgagttaa cagttccttt tgcagcagtt aatatacctg ggtatacaac tggacctttg
     4741 tatttaaaag caaaagtaaa aggaactgca cttattttct cttattcaac tgataaaatt
     4801 aattggactg ttggaggtac tggtacaagt agtacatata caagcggtac agtgcagatt
     4861 gcatggggat atggaggtgg ttcgccgatt gatgcttata tagatgatgt aacattcact
     4921 aatttagatg ttacttcagt aaaacttgta ggtgatgata agtatcttta taccggtgcg
     4981 gaacaagggc cttcaaccag tacaacagct ttttttactt caacacccat agttacgtat
     5041 aaatacaaag gtataggtag tactacttac gatgaaagtg ttactgctcc atcggctgca
     5101 ggaaaatata tagctactgt agatgcgacg tataacatac aaaatgcaaa agacacctta
     5161 gcttacgaaa tttatacacc aaatactgaa aatagttatt cttatacttt ctctgataac
     5221 gttggttctg taccagcagg tattacttat cctgttgcta caacagctaa cggaagtggt
     5281 gtgggctatg ttcaatttat taccggacgt atgttgcctg ctgcttcgcc atactttaca
     5341 ggatataaaa caaccggtaa aatgtttgtc ccaacaactg gtggtaaatt agctggtaca
     5401 acggttgcta acttgacgaa aataccttca tcaagtaact attcattagt ttggaaagag
     5461 tattactctg cagcttcttc aaagaaagga ttcttgttac aggggcaagc cgatacgtgt
     5521 gcatacgctg taggcctgaa aaaaggatat ttattctctg tatacaattc aggaactaat
     5581 actgaattaa gaatctacac agtgtttgca agtggtgcag ttagtaatgg cctaggctat
     5641 cctgtggcga ataatataag tgtccctact gatccgggtg taaatgttgc acgttg
//
LOCUS       DATDNM010000283         2122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_996598, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000283 DATDNM010000000
VERSION     DATDNM010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_996598"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..1137
                     /gene="metF"
                     /locus_tag="VI413_04790"
     CDS             190..1137
                     /gene="metF"
                     /locus_tag="VI413_04790"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007764101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEY6913972.1"
                     /translation="MSVVEKIRSAKSTAFSFELLPPLKGNGIETVYRTIDTLREFDPK
                     YINITTHRSELVFKENAQGLFEQVAERHRPGTVAIAAAIQNKYKIAVVPHIICSGFTR
                     EETEYALIDLQFLGITDLLLLRGDKAKHERNFSPTGHKNATELQAQVNNFNQGLFLDG
                     SKMKSPIVPFSYGMACYPEKHEEAPNMDSDLFYAKQKVDAGAEYLVTQMFFDNQKYYD
                     FVEKCKANGINVPIIPGIKPITLMNQLTALPKIFHLDLPEEFSNELRKCKTDADAAEV
                     GIEWCTKQAIDLKAYGVPSIHFYSMMATQSVKRVAQAVF"
     gene            1156..1377
                     /locus_tag="VI413_04795"
     CDS             1156..1377
                     /locus_tag="VI413_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005813386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4834 family protein"
                     /protein_id="HEY6913973.1"
                     /translation="MLSFLFFIVIFVLVIGLVIISTIFGFIRSIFSFGKRSAQTQNAQ
                     SQAYGQQPTSKSKIFDSNEGEYVDYEEIK"
     gene            complement(1441..>2122)
                     /locus_tag="VI413_04800"
     CDS             complement(1441..>2122)
                     /locus_tag="VI413_04800"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEY6913974.1"
                     /translation="ALLWEILRKERLPEGFVVYTDFQTAGKGQIGNSWESEARKNLLF
                     SMVLYPQKIPLDQLFLLSQFVSLGIKKALDKYVEGISVKWPNDIYWNEKKICGILIEN
                     SLQANKVRTVIGIGLNVNQEIFLSGAPNPVSLRQIIGKPVNRKLLLNRIVQNIMESYN
                     ELDVEKIRLEYASSLYRKDSFHSYTAGGEFFEAKILLVHPDGQLELETKSGERKGFYF
                     KEVQFLMS"
BASE COUNT          679 a          432 c          361 g          650 t
ORIGIN      
        1 acaatctttc cgcggattgt ctctgctttt cacctaatta tatccaacat tgttttctaa
       61 agctaaaaat taagtagcaa ttctacacaa gctgttaact attgcatcgg tatgactgtc
      121 agtttgaaaa aaaatagtac ttttgcagtc aaatttgagt attaatatcg tattaattgg
      181 gacttattca tgagtgttgt agaaaagatc agaagtgcga aatcgaccgc tttttcattt
      241 gagttattac ctccgttaaa aggaaacgga attgaaacgg tttacagaac catagacaca
      301 ctacgtgaat tcgaccctaa atatatcaat atcaccactc accgcagcga attggtattt
      361 aaagaaaatg cacagggact ttttgaacaa gttgccgaac gtcatcgtcc gggaactgta
      421 gccatagctg ctgccattca aaacaaatac aaaattgctg ttgtaccaca cattatttgc
      481 agtggattta cgcgtgaaga aacagaatat gcacttatcg accttcaatt tctgggcata
      541 accgacttgc tccttcttcg cggtgataaa gctaagcacg aacgtaactt ttcgcctacc
      601 ggccataaaa atgccaccga gctacaagcg caggtgaaca atttcaacca gggcttgttt
      661 ttagatggtt caaagatgaa gtcgccaatt gtaccatttt cttacggaat ggcttgttat
      721 ccggaaaaac atgaagaagc gccaaatatg gattcggatt tattttacgc taaacaaaaa
      781 gtggatgcag gagctgaata tttggtaaca caaatgtttt tcgacaatca gaaatactat
      841 gattttgttg aaaaatgcaa ggccaatggt atcaatgttc ctattattcc aggtattaaa
      901 ccaatcacac tgatgaatca gttgacagct ttacctaaga tcttccatct tgatttacct
      961 gaggaatttt caaacgaatt acgcaaatgt aaaacagatg cagatgcagc ggaagtgggc
     1021 atagaatggt gtaccaaaca ggccattgac ctcaaagcat atggagtacc aagcattcat
     1081 ttctatagta tgatggcaac tcaaagcgta aagcgagtgg cgcaagcagt tttttaatta
     1141 tttatcaagc attacatgtt aagttttctc ttttttatag ttattttcgt tttagtaatc
     1201 ggactggtta ttatctcaac tatttttggt tttatacgtt ccattttctc ttttggaaaa
     1261 cgaagcgcac agacacaaaa tgcccagtca caagcttacg ggcaacaacc aacttcaaaa
     1321 tctaaaattt ttgatagtaa cgaaggtgaa tacgttgatt acgaagaaat aaaataatgt
     1381 aacaatgtat taatgtgata attgataatt caacctttag cacatctaat catcaacaca
     1441 tcaactcatt aaaaactgca cctccttgaa gtaaaaacct tttcgttctc cggattttgt
     1501 ttcaagttcc aactgtccat caggatggac taaaagtatt tttgcctcaa aaaattcacc
     1561 tcctgccgta taggaatgaa agctatcttt tcgatacaat gagctggcat attccaaccg
     1621 aattttctcc acatctaatt cattgtacga ttccatgatg ttttgaacaa ttctattcag
     1681 aagaagtttc ctgttaaccg gtttcccaat tatttgtctc aacgaaacag gatttggggc
     1741 accgctcaaa aagatttcct gattcacatt caaaccaatg ccaattaccg tccggacttt
     1801 atttgcctga agtgaattct caatcagtat tccacaaatc tttttttcat tccagtagat
     1861 atcattcggc cattttactg agattccttc tacgtattta tccaatgctt tttttattcc
     1921 caaactaacg aactgagaaa gcaaaaacaa ttgatccagg gggattttct gcggataaag
     1981 taccatacta aaaagcagat tttttcgggc ttccgactcc caagaatttc caatctgccc
     2041 tttgccagcg gtctgaaaat cggtatatac aacgaaacct tccggcaacc gctctttcct
     2101 aagtatttcc cacaaaagtg ca
//
LOCUS       DATDNM010000284         4613 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1850800, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000284 DATDNM010000000
VERSION     DATDNM010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4613
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1850800"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..751
                     /locus_tag="VI413_04805"
     CDS             <1..751
                     /locus_tag="VI413_04805"
                     /inference="COORDINATES: protein motif:HMM:NF017770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HEY6913975.1"
                     /translation="VEYKEKTFSFAGKFGQFLSVYIPGFLLSIITIGIYSPWFTANII
                     NFFAKNSSHDSNSLEFKGKGSDLFLIMLFTLIIPVIILTFVIGIFAFIAGMRGSMQAS
                     EPNSLSNFYGVILVVAIFLMIIPYIYYAYKWRVNFNFKSYNIQWETSFWSSAAKIALE
                     ILLSMITIGIYTPLAMLRLYSYFAERTIAKSETGSKKFGYDIEPGSDFLFIWGQLLLG
                     LITLGIYYPWAFCKVSERIIGKTYSEDIVAV"
     gene            complement(845..2116)
                     /locus_tag="VI413_04810"
     CDS             complement(845..2116)
                     /locus_tag="VI413_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEY6913976.1"
                     /translation="MQPLAERLRPQTLDDYIGQKHLVGEKAILRQMIESGRVASFILW
                     GPPGVGKTTLAKIIANKLDRPFYTLSAVTSGVKDVREVIEKAKSNRFFSQGGNPILFI
                     DEIHRFSKSQQDSLLGAVENGTVTLIGATTENPSFEVITPLLSRCQVYVLKSLENEDL
                     LELANRAITTDPELKNREILLDETESLLRFAGGDARKLLNILDLVVAAAEPDEAIHFT
                     NEVVTERLQQNPMAYDKDGEMHYDIISAFIKSIRGSDPDAAVYWLARMVAGGEDPKFI
                     ARRLVISAAEDIGLANPNALLLANACFDALQKIGWPEGRIILSEATIYLASSPKSNSA
                     YLAIDDALALVDRTGNLPVPLHLRNSPTKLMKDLNYGKNYKYSHDFPNHFVDQQFMPD
                     ELTKERIWKVQNSPAEGKLGEWLRTLWKGRF"
     gene            complement(2298..2831)
                     /locus_tag="VI413_04815"
     CDS             complement(2298..2831)
                     /locus_tag="VI413_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEY6913977.1"
                     /translation="MSYTRKMILYIAMSLDGFIATKNDGLEFLSLVEQEGEDYSYSDF
                     VNTVDTIIIGRKSYEKVLSMGYDYSHTDKEVYVITHAERPAAGNLKFYSGELNVLVSE
                     LKKKDGKDIYIDGGAVVVNELLKDNLIDEFYISVISVLLGDGISLFNGGRPELKLKLV
                     SSKSFNKGLVQLHYTSL"
     gene            complement(2940..3605)
                     /locus_tag="VI413_04820"
     CDS             complement(2940..3605)
                     /locus_tag="VI413_04820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913978.1"
                     /translation="MIDEELVRCRPCGYVMKASDLGEGVCPACGLPHTVFEPYRERVS
                     ANRLFILGLDIHPIAIHLSQTFVALAPLLMLFHLVFPDFQETVVHSVITFSIWALPLS
                     LIASFVSGILDGITRFKTLRTPMLKSKIIFSILIMITAFTQLIFFKPEEYTWVTIILS
                     FISLGFAVKLGLLGKHLLDVILPGTYVRRKKKPTKYAPKAPGERVVTKAPAKADEAPA
                     TAE"
     gene            complement(3685..4326)
                     /gene="nth"
                     /locus_tag="VI413_04825"
     CDS             complement(3685..4326)
                     /gene="nth"
                     /locus_tag="VI413_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009316946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEY6913979.1"
                     /translation="MTTKQRFNFIIDWFNENVPVAETELQYKDPFGLLVAVILSAQCT
                     DKRVNMITPPLLDDFPTPEIMAATTHEVIFEYIRSVSYPNNKAKHLVGMAQKLVNDFG
                     GVVPDDIEKLQTLPGVGRKTANVIASVIFDKPAMAVDTHVFRVSERIGLTTGSKNPLQ
                     TERELVKYIPSELIPKAHHWLILHGRYVCLARKPKCSECGIKTWCRYYSTHPL"
BASE COUNT         1422 a          976 c          874 g         1341 t
ORIGIN      
        1 tgttgagtac aaagaaaaaa cgttttcgtt tgcaggcaag ttcggccaat ttctttcggt
       61 atatatacca ggttttctgc ttagcattat taccattgga atttattctc cctggtttac
      121 ggccaacatt ataaatttct ttgcaaaaaa ttcgtcgcac gattcgaata gtctggaatt
      181 taaaggcaaa ggttctgatt tattcctgat tatgttgttt acattgatca ttccagtgat
      241 tattctaacg ttcgtcattg gaatattcgc atttattgca ggaatgagag gttctatgca
      301 agcatcggag cccaactctc tgtctaattt ctatggagta attttagtgg tcgccatttt
      361 cttaatgatt attccttata tatactatgc ttacaaatgg agagtgaatt tcaactttaa
      421 aagctacaat atccaatggg aaacaagctt ttggagttct gctgcaaaaa ttgcattgga
      481 aattctttta tccatgataa ctataggaat ttatactcca cttgcaatgc tcaggctata
      541 ttcatatttt gctgaacgca ccattgcaaa atcagaaacc ggtagtaaga aatttggtta
      601 cgatattgaa cccggtagtg actttttatt tatctgggga caattgcttt tgggcttaat
      661 aaccctgggc atatactatc cctgggcatt ttgcaaagta tcggaacgta ttataggcaa
      721 aacatattct gaagatattg ttgcagtata aaatactcaa aaagacctat ttgagttagt
      781 caacagtgcc atattccaac aactaaaaaa cgcgaatcct gaatcggttc gcgttttttt
      841 atgtttaaaa tcttcctttc cacaatgtcc ggagccactc tcccagtttg ccttctgccg
      901 gactattttg gactttccat atccgctctt tggtgagttc gtcgggcata aattgctggt
      961 cgacaaaatg gttcgggaag tcatgcgagt atttgtaatt tttgccgtag ttgaggtctt
     1021 tcatcaactt ggtgggtgaa ttgcgcagat gaagcggcac aggcaagttt ccggtacggt
     1081 ctaccaaagc cagggcatcg tcgatggcga ggtatgccga attactttta ggcgatgaag
     1141 ccagataaat tgttgcttcc gacaaaataa tccgtccttc gggccaaccg attttttgca
     1201 acgcatcaaa acaggcgttg gccagcaata gcgcattggg attggccaat ccgatatctt
     1261 cggcagccga aatcaccaac cgacgggcaa taaacttagg gtcttcccca cccgctacca
     1321 tgcgagccaa ccaataaaca gctgcatcgg ggtcactacc gcgaatagat ttgataaagg
     1381 ctgaaataat atcgtaatgc atttcaccgt ccttgtcgta agccattggg ttttgctgca
     1441 ggcgctcggt aactacttcg ttcgtgaaat gtatagcttc gtccggctcg gcggcagcta
     1501 cgaccaaatc cagaatgttg agcaacttgc gggcatcacc tccggcaaac cgtaacaacg
     1561 attcagtttc gtccaacaaa atttcacggt ttttcagttc cggatcggta gttatggcgc
     1621 ggtttgccag ttcaagcaaa tcttcatttt caagtgattt gagcacatac acctggcagc
     1681 gtgaaagcaa tggtgtaata acttcgaacg aaggattctc ggtagtagct ccaatcagcg
     1741 tcacggttcc gttttccaca gcacccagca acgaatcctg ctgcgatttg ctgaaacggt
     1801 gaatttcgtc gataaacaaa atgggatttc cgccctgcga aaagaaacgg ttggatttgg
     1861 ctttttctat aacttctcgt acatctttta ctcccgaagt aacagcactg agcgtataaa
     1921 acggccggtc gagtttgttg gcaataattt tagccagcgt tgttttgccc actcccggag
     1981 gtccccaaag aataaacgaa gccacacgcc ccgattcaat catctgacgc aggatggctt
     2041 tttcgccaac aaggtgtttc tgaccgatat aatcatcgag agtttgtggg cgtaatcgtt
     2101 cggctaaggg ttgcatggca tctgtttttg agaacgacaa atgtaggaaa aatgtggcga
     2161 aacgacaagt ggaattttat gtctgcaatt acctgagtag tatcgaatat taactatcta
     2221 ataaaagata acttaagcca actatgacaa aaaaatggcg aaacaattac gaattagaaa
     2281 agaaataaat caaaatctta caaacttgta tagtgcaact gcaccaaccc tttattgaac
     2341 gattttgaac taaccagttt tagttttagt tcgggccttc caccattaaa aagtgaaata
     2401 ccatcgccca gcaaaaccga aattaccgag atataaaact catcaatcaa attatctttc
     2461 aacaattcat tcaccaccac tgctccaccg tcgatataaa tatccttgcc atccttcttt
     2521 ttaagttctg agaccaatac atttagctct ccgctataaa atttcaaatt accagcagca
     2581 ggacgttcgg catgggtaat tacatacacc tctttgtcgg tatgcgaata atcatacccc
     2641 atcgacaata ctttttcgta ggatttacgt cctattataa tagtatctac cgtatttaca
     2701 aaatcgctgt agctataatc ttcgccttct tgctctacta acgaaagaaa ttccaatcca
     2761 tcgtttttgg tagcaataaa gccatccagg ctcatggcta tataaagaat catcttgcgt
     2821 gtataactca taatatcaaa gttttatttg cccacaaata tatataacat ttccgttttg
     2881 acaaaaaaaa tcccgtttcc tgtaaaaagg aaaacggaat tcatataaat atcatttaat
     2941 tattctgcag ttgcaggcgc ttcatctgct tttgcaggcg ctttagtaac aactctttca
     3001 cctggcgctt tcggtgcata tttagtaggc tttttcttcc gacgtacgta cgtgcccggt
     3061 agaattacat caaggaggtg cttacccaac aaacctaact ttactgcaaa tcctagcgaa
     3121 ataaaactta gaattattgt tacccacgta tattcttccg gtttaaagaa tatgagctgc
     3181 gtaaaagcag ttatcattat caatatgctg aaaattattt ttgatttgag cataggtgtt
     3241 ctcagcgttt tgaaccgggt gataccatct aaaatgcccg acacaaatga agcaattaac
     3301 gaaagtggta atgcccaaat ggagaaagta ataaccgaat gaacgactgt ttcctgaaaa
     3361 tcggggaaaa ccaaatgaaa tagcattaac aaaggagcaa gtgccacaaa tgtttgcgaa
     3421 aggtgaatag caatgggatg aatatccaac cccaaaataa acaaacgatt tgcagaaaca
     3481 cgttcgcgat aaggttcaaa tactgtgtga ggcaaaccac aagccggaca aacgccttca
     3541 cccaaatcac ttgctttcat tacgtatccg cacgggcggc aacgcactaa ttcttcatct
     3601 atcataattg ttctgatttt aaatttaaaa taaagccaca aagataaaaa ctaattaata
     3661 atttgcaatg agaataattg taaattataa aggatgagta gaataataac ggcaccatgt
     3721 tttaattcca cattcgctgc acttgggttt acgggccaga cacacgtatc gtccgtgcag
     3781 tataagccag tggtgagcct taggaatcag ttcggaagga atatatttta ctaactcgcg
     3841 ctcagtttgt aacggatttt ttgaaccggt ggtcaaccct attctttccg aaacccgaaa
     3901 aacatgtgta tccacagcca ttgccggttt atcaaatata acggaagcaa tcacatttgc
     3961 cgttttgcgc cccacacctg gcaaagtttg cagtttttca atatcatccg gtacaactcc
     4021 gccaaaatcg ttcaccaatt tttgcgccat acccaccaga tgttttgctt tattattcgg
     4081 ataggacaca gaacggatat attcaaaaat tacttcgtgc gtagtggcag ccattatttc
     4141 cggtgtcgga aaatcatcca gcaatggcgg agtaatcatg tttacacgct tatctgtaca
     4201 ttgtgccgac aaaataacag ccacaagcaa tccaaaagga tctttgtact gcaattcagt
     4261 ttcagctacc ggtacatttt cattgaacca gtctattata aagttaaatc gttgctttgt
     4321 tgtcatattc atttcgttgc agcaagccaa tatgagtgtc ttgtaatttc caattttaaa
     4381 tttctgcaaa tttataggaa aagatgtaat atgggcgttc ctttttatta tttttgcatt
     4441 ttaaacgaca aactgaaaaa catagctgca agaaaaaaaa ttcatggcac caagaaaacc
     4501 tataaaaacc cctccaaagc cggaagcgaa acaagaatac agaccggaac aaaaagccga
     4561 agcaaaaaag gtaaaacaac cgaaagaccc aaatgaaccg ggctttggaa caa
//
LOCUS       DATDNM010000285         3718 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1958577, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000285 DATDNM010000000
VERSION     DATDNM010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3718
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1958577"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..2190)
                     /locus_tag="VI413_04830"
     CDS             complement(109..2190)
                     /locus_tag="VI413_04830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004560 - alpha-L-fucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEY6913980.1"
                     /translation="MKKKFVFGILFSLFFACILNAQSGKPASCGPTPSENQMRVQEME
                     AYAFVHFSLNTYTDQSWGFGNEDVKLFNPQQADCRQWARICKASGMKGIIITAKHHCG
                     FCLWPSKYTEYSVRNAPWKNGKGDMVREMADACKEYGLKFGVYLSPWDRNQPDYGKPE
                     YITYFRNQLSELLTNYGEVFEIWFDGANGGDGYYGGANETRKIDAKTYYDWKNTYALI
                     HKLQPKCVIWNDGGERGDLRWVGTEEGNVGETNWSLLNATGDVPWNNLHFGLETGNKW
                     VMAEVNTSIRPEWFYHPNEDNKVKTVPQLMDLYYNSIGRNGTILLNFPIMPNGLIHPT
                     DEKNGIEFAKAVKESFANNLALNKKAKATNVRGKSSKFAAAMAVDGNKNTYWATDDDT
                     KTAALTIDLGKPTIFNRFLAQEYIRLGQRVKAFTVEALVDGSWKELAKATTIGYKRIL
                     RFPAVKASQVHFSITDSKCSPVISNIGIYDAPVFLNAPLVERNQTGEVTISTNDIGPI
                     FYYTLDGSNPTAKSKQYSGAFPADGKIEIKAISYDPTSHNCSPMSIEKFDISKKDWKI
                     VGISDEKSAAIIDGNPATVWHQKGDGKMPVDLVIDLGANYKVSGFKYLPDQSKWSSGI
                     ITTYEFYISEDGQNWIQADKGEFSNIKNNPLMQIRKFQPLQGRYIKLYALKNTFGDNV
                     AGYAEVDVMTE"
     gene            complement(2259..>3718)
                     /locus_tag="VI413_04835"
     CDS             complement(2259..>3718)
                     /locus_tag="VI413_04835"
                     /inference="COORDINATES: protein motif:HMM:NF015387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="carbohydrate-binding protein"
                     /protein_id="HEY6913981.1"
                     /translation="TVAVSNVVLSDSNKLAINLQNNVVKSDEVLLSYNNGNVWSRLGK
                     KMANFNDKLVDNSLIGSSPHILEVSTNTGGDTLKVKLNKKMLLPTSLDGFALSAAYNG
                     NKIITLSKCIVSKTDSAVLTMTLGQKVYRDYQLTLVYSGVNVASVDSGLLKPVTSFQV
                     TNVANGLPATAKSAKLNADGFTLNMKFSKPMLLTSAQLTSMPIIKNFTFRCVVKAFSV
                     QDSSIIFQLTDPIHYGDSVRITYNPGTVKAEDNGLLTAFTRLTAQSDVQAPNWIAIPG
                     KVEAENFAFKLGMQAETTTDAGGGQNMGYIATGDWAEYTIDNTSTGKDFQISFRLSAQ
                     SAGGAIDYYLDGTKAGSFNVPATGDWQVFQSTVAKLTANPGKHYLKVVAKTTGFNFNY
                     MEVSGLTELHQVNSVDTKVYFNAASGRLEIKTNEFSYNKIEVFDLMGKLLLSKLSKET
                     ANMSIPIVMPEGVYLVKISSATQYQMIKLAVSGKR"
BASE COUNT         1057 a          827 c          670 g         1164 t
ORIGIN      
        1 gtgtttatca ttgctgtttg ggcataagac acaacataac caacgagtag caatgcaaaa
       61 agaattagta tttttttcat ttgtttagct agtattttac gagtcaattt attccgtcat
      121 aacatccact tcggcatacc ctgctacatt atcaccaaaa gtatttttta atgcgtacaa
      181 tttaatatat cgcccctgca agggctgaaa tttgcggatt tgcatcaaag ggttattttt
      241 tatattcgaa aattcgcctt tatcggcttg tatccaattt tggccatctt cagaaatata
      301 aaactcataa gtggtaatga tacccgaact ccatttactc tggtccggaa ggtatttaaa
      361 accagacact ttgtagtttg cacccaaatc aataaccaaa tcaactggca ttttaccatc
      421 acctttttga tgccatacag tagccggatt tccatcgata attgcagcac ttttttcgtc
      481 tgatatcccc acgattttcc aatccttttt agaaatatca aacttttcga tactcatcgg
      541 gctgcaattg tgagaagtag gatcatagct aattgctttt atctctattt ttccatcagc
      601 cggaaaagct cccgaatatt gtttggattt tgcggtcggg ttgctgccat ccagtgtata
      661 ataaaaaatc ggaccaatat catttgtgga gattgttact tcacctgttt gattacgttc
      721 aaccaaagga gcattcagaa acaccggagc atcataaatg ccaatattgg aaattaccgg
      781 actgcatttt gaatcggtaa tgctgaaatg cacctgactt gctttgacag ccggaaaacg
      841 gaggatacgt ttgtatccga tggtggttgc tttagccagt tctttccagc ttccatccac
      901 caatgcttct acggtaaacg ccttgacacg ctgtcccaaa cggatatatt cctgagccag
      961 aaaacgatta aagattgtag gtttgcccaa atcaatagtc aacgcagcgg ttttcgtatc
     1021 atcatcggtt gcccaataag tgtttttatt tccatcaaca gccattgctg ccgcaaattt
     1081 gcttgatttt ccacgaacat tcgtagcttt tgccttttta tttaaggcca gattattggc
     1141 aaatgactct tttaccgcct tggcaaattc aatcccgttt ttttcgtcag ttggatgaat
     1201 caagccattg ggcataatgg gaaaattgag caatatagtt ccgttacgac ctattgaatt
     1261 gtaataaaga tccatcaatt gaggaaccgt tttcactttg ttatcttcgt tcggatggta
     1321 gaaccattcc ggacggatag aagtgttgac ttctgccatt acccatttat tgccggtttc
     1381 gaggccaaaa tgtaaattat tccacggcac atcgcctgtt gcattcaaca aactccagtt
     1441 agtttcaccc acatttcctt cttcggtacc tacccatctc aaatcgccac gctcgccgcc
     1501 atcattccaa atcacacatt taggctgcaa cttatgaatc aacgcatagg tatttttcca
     1561 atcgtaatag gttttcgcat caattttgcg tgtctcgttc gcaccaccat aatagccatc
     1621 tccaccattg gcgccatcaa accagatttc gaaaacctcg ccataattgg tgaggagctc
     1681 agaaagctgg ttacggaaat aggttatgta ttcaggtttt ccataatcag gttggtttct
     1741 gtcccatggt gaaaggtaaa cgccaaattt aagtccgtac tctttacagg catcagccat
     1801 ttcgcgtacc atatcgcctt ttccgttttt ccagggagcg tttctcaccg aatattccgt
     1861 gtacttggat ggccagaggc aaaatccaca gtggtgcttg gcagtaataa taatcccttt
     1921 catgcccgat gctttgcaga tacgtgccca ctggcggcaa tcggcttgct gcggattaaa
     1981 gagtttcaca tcttcgtttc caaatcccca cgactgatcg gtataggtat tcaacgagaa
     2041 atgaacaaaa gcataagctt ccatttcctg cacgcgcatt tggttctcgg atggtgtcgg
     2101 gccacaagaa gctggtttac cggattgagc atttaaaata catgcaaaaa acaaggagaa
     2161 taaaattcca aaaacaaatt tctttttcat aaaattagtc attcaacaca ttaatattta
     2221 cacaaaattt cttctttttt gattttatgt tttaaaaatc accttttgcc tgaaacagct
     2281 aactttatca tttgatactg agtggcgcta cttattttta ctaaatatac tccctcaggc
     2341 atgacaattg gtattgacat attcgcagtc tctttagaga gcttagacaa aagcaactta
     2401 cccattagat caaaaacttc gattttatta tagctaaact cattggtttt tatttctaat
     2461 ctacctgatg cagcattgaa atacaccttt gtatctacac tattcacctg atgcagttct
     2521 gttagcccac tgacctccat ataattaaaa ttaaacccag ttgttttggc aactacttta
     2581 aggtaatgct tgcccggatt ggcagtcaac ttagcaactg tagattgaaa cacctgccaa
     2641 tcgcctgtag ccggtacatt aaagcttccg gctttggttc cgtcgagata ataatcaata
     2701 gcgccaccgg cactctgagc cgaaagccgg aatgaaatct gaaaatcctt gcctgtagat
     2761 gtgttatcaa tggtatattc tgcccaatca cctgttgcaa tatatcccat attttgtcca
     2821 cctccggcat ctgtggtggt ttcagcttgc atacccaatt taaatgcaaa gttttcggcc
     2881 tcaaccttac cgggaatggc tatccaattg ggggcttgaa catcactctg agccgttaac
     2941 cgtgtgaaag cggtaagcaa tccattgtcc tcggctttga ctgtgccggg attgtaggtt
     3001 attctcacac tatcgccata atgaattgga tcagtcaatt ggaatattat agaactgtct
     3061 tgaactgaaa atgcctttac cacacaccgg aatgtaaagt tcttgataat aggcatcgaa
     3121 gtgagttgag ccgaagtcaa tagcatcggt tttgagaatt tcatattcag tgtgaatcca
     3181 tccgcattca atttagcaga tttagctgtt gcaggtagtc cattggccac gtttgttacc
     3241 tgaaacgaag taacaggctt cagcaaacca ctatccaccg aagctacatt tacacccgaa
     3301 tatacgagtg ttaattgata gtctctgtac actttctggc ctaatgtcat tgtcaaaacg
     3361 gcagaatctg tttttgaaac aatacattta gataaagtta ttatcttatt gccgttgtaa
     3421 gcagccgaaa gggcaaatcc atccaacgag gttggcaaca acattttctt attcaacttg
     3481 actttcaaag tatcacctcc ggtatttgtg ctaacctcta atatgtgggg agaagaacct
     3541 ataagcgagt tatccaccaa tttatcattg aaattcgcca tttttttgcc aagtcgcgac
     3601 caaacattac cattgttgta cgacagcaaa acttcatcag acttaacaac attattctgt
     3661 aaattgatgg ctaacttatt tgaatcagac aacacaacat tgcttacagc cacagttt
//
LOCUS       DATDNM010000286         3820 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1103051, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000286 DATDNM010000000
VERSION     DATDNM010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3820
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1103051"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VI413_04840"
     CDS             <1..186
                     /locus_tag="VI413_04840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913982.1"
                     /translation="VDGVFFFFECGLGLRKCSESKPCPIHNSYKVSREKLYKEFSSIT
                     IQELAAAIEKGHAFLKR"
     gene            442..1008
                     /locus_tag="VI413_04845"
     CDS             442..1008
                     /locus_tag="VI413_04845"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY6913983.1"
                     /translation="MKNETLTRTKKRKFVITYKESFNLKSSFMNRKNILLAFLSGTIV
                     LAVACNSNDKGKESSTSSTESSAPATTTESNNPNGIGPHQKVELTHPLDEKMVAQGEN
                     IYNVKCASCHKLTNEKLVGPGWKGVTDRRTPEWIMNFVTNTEEMLEKDTAAQNLLEVC
                     LVKMPNQNLSEADARSVLEFQRKNDGKK"
     gene            complement(1019..2278)
                     /locus_tag="VI413_04850"
     CDS             complement(1019..2278)
                     /locus_tag="VI413_04850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913984.1"
                     /translation="MNKDKRSFWLTLAIINLCIVAFLGFSLRSKILFPLPFLDYSGLL
                     SAHSHFAFAGWVGLSLITLFVYDVLPATLSNNRIYQLVLAGIEISGLGMAFGFPFYGY
                     NSLTIAFSTVYILAVAVFVPLFVRDVFNSSIERSVKLLSVVAVTSLLLSFLGTVGLMY
                     IIVTRSGGSLLYRDSIYIFLHFQYNGFFTLSVFALIFNYLVKKGLFQNRNSWLFSIFL
                     CSSIIPALFLALLWHNKTSFYLLAALGCLLILLTLVYFFLLLKTTALKEMFASGISRV
                     FLLFSLVSFVLKMLLQVGTIFPQLGNAVYGDRPVIIGFLHLVFLGFITFFLLALLIEN
                     GYFSRPGKQVVIPFVVFSFGIIANEVVLMLQGLGILLNTNSDIYKWLLWGAAIILFTG
                     AFLIAFSRLNIVLGTKNKATRLDGFTK"
     gene            complement(2296..3324)
                     /locus_tag="VI413_04855"
     CDS             complement(2296..3324)
                     /locus_tag="VI413_04855"
                     /inference="COORDINATES: protein motif:HMM:NF019352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEY6913985.1"
                     /translation="MKQLILLSGLFIICSCSQNDKSGKESNLVLGSPKAVVANQPDNG
                     KQTGPLAYAPNVPKLQDGDTVEVKIDVTHKLFTVKNGVSFTGWLYGDSLPGPVLRIRV
                     GQTVKFSMTDRSNDSTKMSMDMGGQTLQPMPHSIDFHAAMVNPEDKYRSISPGETIHF
                     TWTANYPGVFMYHCGTPMVLLHMISGMIGMVIVEPKGGFPGSVDKEFAIVQNEYYLSP
                     KGAYYVPDTSLALKRQPNFVAFNGKVGQYIVHPIRVKAGERIRVYFLNVGPNNISSFH
                     IIGTILDKVWLDGNPANQFTGMQAVLVGPAQGAIMEFVLPEKGSYTFVDHSFANATMG
                     ATGVFAAE"
     gene            3498..>3820
                     /locus_tag="VI413_04860"
     CDS             3498..>3820
                     /locus_tag="VI413_04860"
                     /inference="COORDINATES: protein motif:HMM:TIGR00738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEY6913986.1"
                     /translation="MRDEKRYVQVEEIASKLSVPRHFMGKIMKKLAKEKILISTKGPS
                     GGFMLNENTLDMHLMDLIVIIDGVEIFDNCVLRAKECNSDNPCPLHAQIDSVKRNLKS
                     ILSETS"
BASE COUNT         1199 a          786 c          856 g          979 t
ORIGIN      
        1 gttgatggag tatttttctt ttttgaatgt ggccttggac ttcggaagtg ttctgagagt
       61 aagccttgcc cgatccataa cagttataag gtgtcgcggg agaaattgta taaagaattt
      121 tcttcgatca cgatacagga actggcagcc gccattgaaa agggccatgc atttttaaaa
      181 aggtgatatg agcagggttg tattcgcttt tcttttgatc tcgatttcgc tgtcggctac
      241 ctcgctgaga tttaagtcat accggcctgt gctttatgcc tggattgcgc tactgaagat
      301 aagaagaaac agtctagcta ccaggtcgac attgacgcgt aggatgggac tggtataaga
      361 tttatggcag ggcgtttgag cggataggag agatgttgtt aggatttgga tgtatgttgg
      421 gattcagaaa aaatggaccc cttgaaaaac gaaacgctaa cgagaaccaa gaaacgtaaa
      481 tttgttataa cctataaaga gagttttaat ttaaaatcaa gttttatgaa tcgaaagaac
      541 attttattgg cctttttatc cggcacaatt gttttagcag tcgcttgtaa ttccaatgat
      601 aaggggaaag agagttcgac ttcttcaaca gaaagcagtg cacccgctac caccacggaa
      661 tctaacaatc caaacggcat cggacctcac cagaaagttg aactgacaca cccgctggat
      721 gagaagatgg ttgcccaggg agaaaatatt tataatgtga aatgtgcgtc ttgtcataaa
      781 cttaccaatg aaaaattagt tggaccaggc tggaaagggg tcaccgacag gagaacgcct
      841 gagtggatta tgaattttgt gactaacact gaagaaatgc tggaaaagga tacagcagca
      901 caaaacttgt tagaagtatg tttggttaag atgccgaatc aaaatctttc cgaagccgac
      961 gcaagatcgg tgcttgaatt ccaaaggaag aatgacggta aaaagtagat caacctaatt
     1021 atttagtaaa gccatccaaa cgggtggctt tattttttgt acctaataca atatttagcc
     1081 ggctaaaagc tataagaaaa gcgccggtga acaagatgat ggccgctccc cacaaaagcc
     1141 acttataaat atcgctgttg gtgttcaaaa gaatgccaag cccttgcagc atcaacacga
     1201 cttcgtttgc aatgatgccg aaagaaaaga cgacgaaggg tatcaccact tgtttgcctg
     1261 gtcgagagaa ataaccattc tctataagca aagcgagcaa aaagaacgtg ataaatccaa
     1321 gaaacaccaa gtgaagaaac ccgataataa ccggcctgtc accataaacg gcatttccaa
     1381 gctgcgggaa aattgtgcct acctgtaata acattttaag gacaaatgac accagcgaaa
     1441 acaggaggaa aacccttgaa atacccgatg caaacatttc tttaagcgct gttgttttca
     1501 acaaaaggaa gaaataaaca agtgtcaaca agattaacag gcagcccaac gcggctaata
     1561 gataaaaaga agttttgttg tgccagagca aagcaagaaa tagagcggga attatagaag
     1621 agcacaagaa aattgaaaat aaccagctgt ttcgattttg aaacaggccc ttttttacca
     1681 ggtaattgaa gatcaatgca aaaaccgaga gtgtaaaaaa gccattgtat tgaaaatgaa
     1741 ggaaaatgta aatcgaatcc cggtataaca aggatcctcc acttcgagtt acaattatgt
     1801 acatcaagcc gacggttcca aggaaagaga ggaggaggct ggtaaccgcg acaacggaca
     1861 ataatttgac actcctctca attgaactat tgaaaacatc cctcacgaag agtggtacaa
     1921 ataccgctac ggccaggatg tacacagtag aaaacgcaat ggtaagagaa ttatatccgt
     1981 aaaagggaaa gccaaatgcc atccccaatc cactaatttc aatacccgcc aaaaccaatt
     2041 gatatatcct attattcgag agtgtcgccg gtaagacgtc gtagacaaaa agagtgatca
     2101 aagaaagacc cacccagccg gcaaatgcaa aatgagagtg ggcacttagc aggccactat
     2161 aatcaaggaa gggaaggggg aagaggatct tactccgcag tgaaaaacct aaaaacgcta
     2221 caatacacag atttataatg gccaacgtga gccagaaact ccttttgtct ttattcatga
     2281 atttttcttc ccggtttact ctgcagcgaa tactcctgtt gcgcccatgg tcgcattcgc
     2341 aaatgaatgg tccacaaaag tatagcttcc tttttcagga agaacaaatt ccatgatcgc
     2401 tccttgtgca ggaccgacca ataccgcttg catgccggta aattggttcg caggatttcc
     2461 gtcgagccag actttatcca aaatagtccc gatgatgtga aagcttgaga tgttgtttgg
     2521 tccgacattc aggaaataga cacggattct ttcgcctgcc tttacccgaa tcggatgaac
     2581 tatatattgc cccactttac cgttgaaagc gacgaagttc ggctgtctct tcagagcgag
     2641 cgaagtgtcc ggtacataat aagcgccttt tggcgacaga tagtattcat tttgaacgat
     2701 agcgaattcc ttgtctacac taccgggaaa tccacctttt ggttcaacga taaccatccc
     2761 aatcatcccg gagatcatat gtaacagaac cattggcgtt ccacagtggt acatgaaaac
     2821 gcccgggtaa ttggcggtcc aggtgaagtg aatggtctcc ccgggtgaaa tgctacggta
     2881 tttgtcctcg ggatttacca tggcggcatg aaagtcaatg gagtgcggca tgggctgaag
     2941 cgtttgtcca cccatatcca tactcatctt tgtggagtcg ttggaccgat cggtcattga
     3001 gaatttaacg gtctgcccta cgcgtattct gaggacgggt cccggcagcg aatcgccata
     3061 taaccatcct gtgaatgaca ctccgttttt tacggtgaac agtttgtggg tgacatcaat
     3121 tttcacctcg acagtgtcgc cgtcctgtag tttagggaca tttggcgcat acgccagcgg
     3181 tcccgtttgt ttcccgttgt cgggctggtt ggccacgact gcttttgggc ttcctaaaac
     3241 aaggtttgat tctttgcccg atttgtcgtt ttggctacag gaacaaatga tgaaaagacc
     3301 acttaataag attagttgtt tcataattta atgacaatca aaaatcatgc tttgctgacc
     3361 actgtcaaaa gacagactga tataaatcat attgcccccc ttacagtaaa gatatatttg
     3421 tttagagtaa aaaggatatt atgatcttct ccaaatcatt cgggtacgcc attagaagca
     3481 ttctttatgt tgccatcatg agagacgaaa aacgttatgt ccaggtggaa gaaattgcct
     3541 caaaactgtc ggtgccacga cactttatgg gcaagatcat gaaaaagctt gccaaggaga
     3601 agattttgat ttccaccaaa ggaccttccg gcggtttcat gctgaatgag aacactttag
     3661 acatgcacct gatggatctc atcgtcatta tagacggtgt tgaaatattc gacaattgtg
     3721 ttttgagggc gaaggaatgt aactcagaca atccttgtcc tttacacgca caaattgact
     3781 cggtaaagcg taacctgaaa tctattcttt ctgaaacgtc
//
LOCUS       DATDNM010000287         3058 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1958796, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000287 DATDNM010000000
VERSION     DATDNM010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3058
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1958796"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VI413_04865"
     CDS             <1..207
                     /locus_tag="VI413_04865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913987.1"
                     /translation="GGLSNLSSIELIQHIRMKKRILSPIWFFPEIQTEKYILKAKEMG
                     VNKFITKPFDPYVVIDEITAKLLK"
     gene            233..1480
                     /locus_tag="VI413_04870"
     CDS             233..1480
                     /locus_tag="VI413_04870"
                     /inference="COORDINATES: protein motif:HMM:TIGR04390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YaiO family outer membrane beta-barrel protein"
                     /protein_id="HEY6913988.1"
                     /translation="MRHILLLFFLSASLTGAIAQINTDSIFNTAINLAKNQNYALAIE
                     NAKEALKQDSKRGDIMVFIANVYSWQNKNDTALIYIQEAQKVDYRQNDFYEAKTNILL
                     RSGKYGELLTNCNEALENNYSNTEDILKKKMIAYDALKEYNNGINLIELPENKKYLES
                     KSIDDLYSTLLLKRNTNVISAYYTLDMFDSGFTPQHLAALGYSFKIGEHNLGFRLNYA
                     NRFGLNDVQLESDFYLKLKQKQYMYFNYGYAFNASLFPTHRFGLEYYFPLPNKFEASI
                     GGRYLNYTNSDVFIVTGHLGKYIAKSWMGIRPFYVYKTPANTQSLSLIANYRIFSKTE
                     LDYWGVEVGLGNSPDDIYSTSQIGGFNQLKAYKIKLEKNFMLNRTSDLHIGLGYSREE
                     YGTITTQFRNRFTVELGYKIRFK"
     gene            1477..2700
                     /locus_tag="VI413_04875"
     CDS             1477..2700
                     /locus_tag="VI413_04875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913989.1"
                     /translation="MKTLVIYTRYWVLRVFYISIVIFILFGSYYYANPELIIGNYIIH
                     NPLYSNLDNIPAWLYAVDYFIFLFAIGIIIIFCWILYYNTNKRHKEKTDKQYIHLFVS
                     NLFGYLFMVEKFTEKEKKAKLKVLKRALRDDHARRLFINTLRQIHKQTIGPVSEKTLK
                     LMRAVKYDSLVRSYLNSPYLRHKIFALKVISDFNLEGHEKHILRLAKRKNNVLRSEAI
                     VTLLNLKVYEDLKFIDNLKTTLTLWDINIIVKTVLELNIKNIDYKSLIISEYPNVSIL
                     GIMLARFNKQYIFKNVILTKIGNSDNLLNEEAFLALTALAESKDDYKFLIDNFDVATE
                     KAQLEIIQTVANSTEEAEAIKFLNWVVENKHYKQKVEALTLLLDLDLESITRFKKSEN
                     KQIQKSCLQVLDFNI"
     gene            2712..>3058
                     /locus_tag="VI413_04880"
     CDS             2712..>3058
                     /locus_tag="VI413_04880"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006282346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6913990.1"
                     /translation="MNDFNWIDIFNSIFFIYACILFGIYIFNAVLSILELRKYTSKNK
                     YVDYKSMLSFQKLPSVSVIAPAYNEERTIIDNIECLLSLHYMDFEIIIVNDGSTDNTL
                     DKITKHFDLVKVN"
BASE COUNT         1144 a          483 c          476 g          955 t
ORIGIN      
        1 ggcgggttat ccaatctatc aagtatcgag ctaattcaac atatcagaat gaaaaaacga
       61 attctgtctc caatttggtt tttccccgaa attcagacag aaaaatatat tctcaaagca
      121 aaagaaatgg gtgtaaacaa gtttattacg aaaccatttg atccctatgt cgtaattgat
      181 gagattacag ccaaacttct taaataaata cattatccga gtttatatga aaatgagaca
      241 tattttacta ctatttttcc tttcagcatc tttgactgga gcaatagcac aaattaatac
      301 agattcaata tttaacacag ctattaattt agccaaaaat cagaattacg ctttagctat
      361 tgagaatgcg aaggaagcct tgaaacagga ttcaaaaaga ggtgatatca tggtgtttat
      421 tgccaacgta tattcatggc aaaataaaaa tgacacagca ttaatttata tacaagaagc
      481 ccaaaaagtt gattatcgtc agaatgattt ttatgaagcc aaaacgaata tcctcctacg
      541 ttctggaaaa tatggagaat tacttacaaa ttgtaatgaa gcattagaaa acaactattc
      601 gaacactgaa gatattctca aaaagaaaat gattgcttat gatgcattaa aagaatataa
      661 caatggaatc aatttaatag aactgcctga aaacaaaaaa tatcttgaat caaaatccat
      721 tgacgatttg tattctacct tattactaaa aaggaatacc aatgtaattt cggcatatta
      781 caccttggat atgtttgata gcggatttac ccctcagcat ttagcagcgt tggggtattc
      841 attcaaaata ggagaacata atcttggatt tcggctaaat tacgccaaca gatttggatt
      901 gaatgatgtt caattggaga gtgacttcta tcttaaattg aaacagaaac aatacatgta
      961 tttcaattat ggatatgcat ttaatgcttc acttttccca actcacagat ttggtttaga
     1021 gtattatttt ccgttgccaa ataaatttga agcttcaatt ggcggacgct atcttaatta
     1081 caccaattca gatgtattta tagtaacagg ccatttaggc aaatatatag ctaaaagttg
     1141 gatggggatt cggccatttt acgtttataa aacccctgca aatactcaat cgttatcatt
     1201 aatagctaat tacagaattt tcagcaaaac agaactggat tattggggcg ttgaagttgg
     1261 tttaggaaac tcgcctgacg atatttattc aacatctcag attggtggtt ttaaccaact
     1321 aaaagcatat aaaataaaac tcgaaaagaa ttttatgcta aatcgcacct ctgatttgca
     1381 catcggctta ggttattcca gagaagaata tggtacaata acaacacagt tcagaaacag
     1441 gtttacagtt gaattgggct ataaaataag atttaaatga aaacattagt aatatatacc
     1501 cgttattggg tactcagagt attttatatt tcaattgtca tttttatact ttttggcagc
     1561 tattattatg ctaatccgga gttaatcata ggaaactaca taatccataa tcccctgtat
     1621 tcaaacttag ataatatacc ggcctggtta tatgctgttg attattttat ttttctcttt
     1681 gcaataggaa ttatcataat tttctgttgg attttatatt ataacaccaa caaaagacat
     1741 aaagaaaaaa cggataaaca atatatacat ctatttgtaa gtaatctgtt cggttatcta
     1801 ttcatggtcg aaaaattcac agagaaagaa aaaaaagcaa aattaaaagt tctgaaaaga
     1861 gccctgcgtg atgatcatgc tcgtaggctt tttataaaca cacttcggca aatacataaa
     1921 cagacgatag gtccggtaag cgagaaaacg ctaaaactaa tgagagcagt taagtatgat
     1981 agtttagtca gatcatacct gaactcccct tatctcagac ataaaatatt tgccttaaag
     2041 gttatttctg atttcaacct tgaaggacac gaaaaacaca ttctgaggct ggcaaaaagg
     2101 aaaaataatg ttctacgctc cgaagcaatt gtcaccttac taaatctgaa agtttacgaa
     2161 gatcttaagt tcatcgacaa tttaaaaaca acacttacgt tgtgggatat aaatattatt
     2221 gtaaaaacag tactcgaatt aaatatcaaa aacatagact ataagtcatt aattatttcg
     2281 gagtatccaa acgtatctat actcgggata atgttggcca gatttaacaa gcaatatata
     2341 ttcaaaaatg taattctgac taaaattggc aatagtgaca atttattaaa tgaagaagcc
     2401 tttcttgcac taactgcact agcagagagt aaagatgact acaaattttt aattgataat
     2461 ttcgatgttg caactgaaaa agctcaattg gagattattc aaactgttgc aaactctaca
     2521 gaagaagctg aggctatcaa atttttaaat tgggtcgtag aaaacaaaca ttataaacaa
     2581 aaagttgaag cactgaccct actattggat ttagacttgg agtcaattac ccgattcaaa
     2641 aaatccgaga acaaacagat tcagaaatca tgtttacaag ttcttgactt taacatataa
     2701 aatctaacac catgaatgat tttaactgga tagatatatt taacagcata ttctttatct
     2761 atgcttgtat cttatttgga atttatattt tcaatgcagt tctatcaatt ttagagttgc
     2821 gcaaatatac gagtaagaat aaatacgttg attataaatc gatgctatca tttcaaaaat
     2881 taccctctgt ttctgttatt gcacctgctt ataatgaaga aagaacaatt atagacaaca
     2941 tagaatgcct actatcatta cattacatgg attttgaaat aattattgta aatgatggaa
     3001 gcaccgacaa tactttagat aaaataacca aacatttcga tttagtaaaa gtaaacaa
//
LOCUS       DATDNM010000288         2808 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_143897, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000288 DATDNM010000000
VERSION     DATDNM010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143897"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2144)
                     /locus_tag="VI413_04885"
     CDS             complement(<1..2144)
                     /locus_tag="VI413_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913991.1"
                     /translation="MKKLFRGIFHPYAILVIGLLIGSFALTSCNDNYLEDHEPEWLGA
                     SIYDYLKTDGHFTNYTKLIEDLDYTEVLSRTGSKTLFVANDSAFNEFYKNNEWGVTSY
                     DQFTLAQKKLILNFGMINDAYLVEMLSNYNAGGLKEGAGMRKVTAVSVLDSLPFVNGL
                     TLPDMPYWQYYRGKGMYLLQDNTLWTTMFFTQKHLEQTRITDEDFTALTGLTRSVKDA
                     HVFGIKITKRDITCKNGYLNVLQSVLIPPVNMAQYVNSNPKMKIFSKLLERFSAPFFD
                     AANTLLYTQKHPTFTDSIFTKMYFAKSGGSLRYPSGAVINTDLLLPFDPGWNSYSRNS
                     VGASLESDMAAMFVPNDEAMEKFFNSGAGAVLKDRFGSWDNIPTDILPLFIKRHMRNS
                     IVESVPSRFYKMVDEDNSVLPVSKSDIENVYIGSNGVIYETNKVYPPDDYNSVYGPVL
                     LSANDASMVNKTKIWKWAITQNDFRLYLNSMVSKYSFFVPTDEYFTKYIDPIAYAKDV
                     QGALKYWYNSKSNTVNATVYKYDKVTGEVGDSVAVITSPSYLVNRLLDLLNMHIVVGG
                     VETGKEYYLTKGNVALHVTGSGNDMQIEGGGNMAMNDPVKVNRVYNQSNGNTYFIDKP
                     IQSPLNSVFKVMSQTPEFSAFFGLLSGFPAGGSSIIFVNKTNYYGIDFNIKFFNTFNY
                     TVYVPTNDAINQAITDGIIKPWDSKGVIVGIN"
BASE COUNT          881 a          554 c          504 g          869 t
ORIGIN      
        1 tcgtttatac caactataac tccttttgaa tcccatggtt ttataattcc gtctgtaata
       61 gcctgattaa ttgcatcgtt tgttggcaca taaacggtat aattaaatgt attgaaaaac
      121 ttaatgttga aatcaatacc gtaatagttg gttttgttga caaatattat tgaactgcca
      181 cctgcaggga agccactcag caatccaaag aatgcgctga actcaggtgt ctggctcatt
      241 actttaaata cagaattcaa aggcgattga attggcttgt caataaaata ggtatttccg
      301 ttcgattggt tataaaccct gtttactttt accggatcat tcatggccat attgccgcca
      361 ccttcaattt gcatgtcgtt gccactgcct gttacatgca aagctacatt tcctttggtg
      421 aggtagtact ctttacccgt ttctacgcca ccaaccacaa tatgcatgtt caataaatca
      481 agaagccggt taaccaaata acttggagaa gttattactg caactgagtc acccacttca
      541 cccgtaactt tatcatattt ataaactgtt gcattcacag tattcgactt ggaattatac
      601 cagtatttca atgcaccctg tacatctttt gcatatgcaa tcggatcgat atatttagta
      661 aaatattcat ctgtaggcac aaaaaagctg tacttgctaa ccattgagtt taaatacaaa
      721 cggaagtcat tttgagtaat ggcccatttc catattttag tcttgttgac catggatgca
      781 tcatttgcac ttagtagaac cggtccgtac accgaattgt aatcgtctgg cggatatact
      841 ttattagttt cgtaaattac accatttgaa ccgatatata cgttttcaat atcgctttta
      901 gaaacaggta acacagaatt gtcctcatct accatcttgt aaaaccggct tggaaccgat
      961 tccacaatcg aatttcgcat gtggcgtttg ataaaaagag gtaaaatgtc ggtagggata
     1021 ttatcccaac ttccaaatct gtctttcaaa actgcaccgg ctccggaatt aaaaaatttc
     1081 tccatagctt catcgtttgg aacgaacatg gctgccatat ccgactccag cgatgctcca
     1141 accgagttac gcgaataact gttccatccc ggatcgaatg gtagcaacaa gtcagtattg
     1201 ataactgcgc ccgaaggata tctcaggctt ccgcctgatt ttgcaaaata catttttgta
     1261 aaaatcgaat cggtaaacgt aggatgtttc tgtgtataca gcaatgtatt ggctgcatcg
     1321 aaaaaaggtg cactgaaacg ttcgagcaat ttagagaaaa tcttcatttt cggattactg
     1381 ttgacgtatt gtgccatatt caccggagga ataagtacac tctgaagtac attcagataa
     1441 ccgtttttac aggtaatatc ccgtttagtg attttgatac caaaaacgtg agcatccttc
     1501 accgacctgg taaggccggt aagagcagtg aaatcttcgt cagtaattcg ggtttgttct
     1561 aaatgtttct gtgtaaagaa catggttgtc cacaaggtat tatcttgtaa aagatacatt
     1621 cccttgccac gataatattg ccagtagggc atatcaggta aagttaatcc attcacaaaa
     1681 ggcaaactgt ccaatacaga cacagcggtt actttacgca ttccggctcc ctctttgagc
     1741 ccacctgcat tgtaattcga aagcatttcc acaagataag catcgttaat cattccaaaa
     1801 ttcagaatga gtttcttttg agccaacgtg aactggtcgt aactggttac accccattca
     1861 ttgttcttgt agaattcatt aaaagccgaa tcattagcca caaaaagcgt tttgcttccg
     1921 gttctggaaa gaacttccgt ataatccaga tcctcaataa gctttgtgta attggtaaaa
     1981 tgaccatcgg ttttcaaata atcgtatata cttgcaccaa gccattccgg ttcgtgatcc
     2041 tcgagataat tatcgttaca ggaagtcagt gcgaagctcc cgataagcaa tccgattacc
     2101 agtatggcat atgggtgaaa tatacctcta aaaagttttt tcattttata ttgaatttaa
     2161 aatataagct tgtcggacgg ttaaaccgac cgttgattta tttggcataa aagcggttgc
     2221 aaggataatc gacgcacaaa atcagatgcg tagaaaacct gtatgagttg taaaaaattt
     2281 attctgtatt gcaaagtgat gacagacgta tcgaagtcat attcagaggc aaatgtaggc
     2341 ttataaatca accggctagc gtcggctgtt gtgaattgcc gattatgttg agcataatca
     2401 gaaaaaaagc gggttaaatc aaaaaaagta gatgtgctat tcatattatt aattcattcc
     2461 tttaacggaa atcaatcaaa ttctaaaatt gacgaaaagg ttatttaagg ttgcttggac
     2521 tccaccaatg cggaagacca ttttcaaatc caacatttgt attttcaaca aaatgcatat
     2581 aaactggtaa atataaatca tgttctgtct aattccgaac aagaccggaa tcattatcaa
     2641 aaacaatgtt taatttacta ccggttgaac tgagattaat tcaaccggta gtaaaaaatt
     2701 attaggacaa actcagaatg agttttactg aatttatttg attacttttc taaagcttga
     2761 ttctccgttt ttcgaaatct tcacaatgta cattcctgaa ggaagaac
//
LOCUS       DATDNM010000289         2259 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_890648, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000289 DATDNM010000000
VERSION     DATDNM010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_890648"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(931..>2259)
                     /gene="mnmE"
                     /locus_tag="VI413_04890"
     CDS             complement(931..>2259)
                     /gene="mnmE"
                     /locus_tag="VI413_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007654033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEY6913992.1"
                     /translation="VSGTDALKHCNAIFTAKKKTALLLQQEANTVSFGSIINSNDEII
                     DEVLVSVFRAPHSFTGEDVVEISCHGSVFVQQQILQVLLEQGCILAQPGEFTQRAFLN
                     GKMDLSQAEAVADLIASTSAASHRMALNQMRGGFSNELMKLRAQLLDFVSLVELELDF
                     NEEDVEFADRTQLKSLASAIERLISRLSDSFRLGNALKNGIPVALVGETNVGKSTLLN
                     VLLNEDKAIVSDIHGTTRDVIEDTININGISFRFIDTAGIRDTKDKIENLGIERTYQK
                     IEQASIVLWILDCTMLTEHIEWLTDRISKRAEGKKVILVFNKIDKIVEDEREVLNQLF
                     EQFNGERIYISARERINTDGLQKALVAAAQLPDVNPGDVVVSNIRHYEALRKAHTAIS
                     RVIEGIDSGISGDFLSQDIRECMHFLGEITGQISNDEILGNIFGKFCIGK"
BASE COUNT          644 a          439 c          415 g          761 t
ORIGIN      
        1 aaataagttt atttttttta gaaaaaaata tcaaaatgtt tttttgctga catgtgtaaa
       61 ctttccaatt ttaatagtag gtatattgtt gacactgatt atttgccaaa ttcgtctaac
      121 ttttatttta tatttttctt caatttcagc caaagtgtaa aaatcaataa cacaattaaa
      181 gtttggtcgt tcaagcttga tatatttgta tttttccccg aataaagcat ttatatctgt
      241 tctttttata attgtgtgat gataattttg tggcatttag tttcccggag taaatgtatc
      301 tatatattgt gttttcatct actccaagta gttttgccgt ttctttaatg tttaagtgaa
      361 tttttgaatt tagctcataa tatgattgat tacgaatttt ctcgttctta taatctatct
      421 tttttttgag ttccaatcgt tgatttaatt tataagccct tgaattgcat ttatgactgc
      481 aatattttgt ggttgatttt aaagcaatga attcaagccc acaatggata caaatcttcg
      541 taaattctaa atttgatttc gtcatttcgc caattttttt ctcctatatt ctccgatatt
      601 cccaaaatgt gaactttttt gataaacatg gcatgaaaaa gttctgtttc ggatgaaaat
      661 tgatttcgag gtacaaataa aggacaaaaa tatgactaat gttggtgaga gagggggagg
      721 agggggagga gtaaaaaaaa tagagtactg aaaatcaact atcccatttt tctgacgtac
      781 ttgtcgctaa tcatatgtat tccttgttag gttgctcctc agcagagcct aactccgctt
      841 gaatatgata gcacaaagat aaaattaaat gtaaagcaat tacaggatta taaacaaaaa
      901 actgtaaaca aatttcagga cgatacaggt ttactttcca atacagaatt tcccgaatat
      961 attcccaagt atctcgtcat tagatatttg tccggtaatt tctcccagaa aatgcataca
     1021 ttcccggatg tcctgcgaca gaaagtcgcc ggatattccg gaatcgatgc cttcaattac
     1081 acggctaata gcagtatgtg cctttcgtaa tgcttcgtag tggcggatat tacttacaac
     1141 cacatcgccc ggatttacgt caggaagttg tgctgccgca accagtgctt tctgaaggcc
     1201 atctgtatta atgcgctccc gggctgaaat atagatcctc tcgccgttga attgttcgaa
     1261 aagttggtta aggacttcgc gttcgtcctc gactattttg tctattttat taaacaccaa
     1321 aatgactttt ttgccttctg cacgctttga tatcctgtcg gtaagccatt caatatgctc
     1381 ggtcagcatt gtgcaatcca gaatccaaag tacaatggat gcttgttcta ttttttggta
     1441 agtccgttct atccccaggt tttcaatttt atctttcgta tcgcgaatgc ctgctgtgtc
     1501 aataaaccga aacgaaattc cgtttatatt gatggtgtct tcaatcacat cgcgcgttgt
     1561 tccgtgtatg tcagaaacga tggctttatc ttcattcaac agtacattca gtaacgttga
     1621 tttgcccacg ttggtttcac caacaagtgc aaccggaatt ccatttttta aggcattccc
     1681 gaggcggaat gaatcagaaa gccttgatat cagcctttca atggccgatg caagcgactt
     1741 tagctgggtg cggtcagcaa actccacatc ttcttcatta aagtcaagtt caagttctac
     1801 taatgaaaca aaatccagta gttgggcacg cagtttcatt aattcattcg agaaaccacc
     1861 gcgcatctga ttcaaagcca ttcgatgtga ggctgccgaa gtggatgcaa tcaaatcggc
     1921 aaccgcctcg gcttgcgaaa gatccatttt gccattcaaa aaggcacgct gggtgaattc
     1981 accgggctgg gccagtatgc aaccttgttc gagcaatacc tgcaaaattt gttgttgcac
     2041 gaatactgag ccgtggcagg agatttcaac cacatcctcg ccggtaaacg agtgtggagc
     2101 cctgaatact gacaccagca cttcgtcaat tatttcatca ttactgttaa tgatacttcc
     2161 gaaactaaca gtatttgctt cttgttgaag taataatgct gtttttttct tagcagtaaa
     2221 tatagcgttg caatgtttca acgcatcggt tcccgatac
//
LOCUS       DATDNM010000290         3930 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_890692, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000290 DATDNM010000000
VERSION     DATDNM010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3930
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_890692"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VI413_04895"
     CDS             complement(<1..552)
                     /locus_tag="VI413_04895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913993.1"
                     /translation="MTSIHKIFFPAILLFASLLITFGFSGCSDENFSTNPKYKLEFST
                     DTLTFDTVFTTLGSATAKILVFNRNKVALKISRIGIAGGRNSSFKMNVDGSVSADNQF
                     RDIEIRANDSLFIFMSVKVDPTDANSPVLIEDSLTFQTNGVNQDIKLQAFGQDMILLK
                     NKYVVNDTTLTATKPYLVYGYLAI"
     gene            954..1232
                     /locus_tag="VI413_04900"
     CDS             954..1232
                     /locus_tag="VI413_04900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6913994.1"
                     /translation="MASRRKLKQTIQFVSSELITDIYFRCLMSKEVEDQKVDDLVVKI
                     MALTREYILRVNRPDGKDNPKLVKAYFRKLYSDWQAAMEQIVKEIETI"
     gene            complement(1305..1979)
                     /locus_tag="VI413_04905"
     CDS             complement(1305..1979)
                     /locus_tag="VI413_04905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008150375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HEY6913995.1"
                     /translation="MNKIKRIALISFLIVCISPASRAQGNLPYVDGKFIHFGFSLGFN
                     AMDFGINSKDSVAVSDLRPGFSVGIISDLRLNRYLNLRFTPTLNFGQRQLNYKFPGGV
                     LDSTSVSSILICMPLYLKYSAERKGNYRPYLLWGGGMYYDLGQSAANDVRVLLKPIDF
                     YTEFGVGCDIYFSFFKLAPELKFAIGFNDMLNHDYVPQVDANKKFTQALTKLTSRMIT
                     LSFNFE"
     gene            complement(2740..>3930)
                     /locus_tag="VI413_04910"
     CDS             complement(2740..>3930)
                     /locus_tag="VI413_04910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4450 domain-containing protein"
                     /protein_id="HEY6913996.1"
                     /translation="YTINQHFEKKLVVELQVKAYYESISSVIINGKTAAWKLVETAGE
                     YPVISISVTEPGKIEIVWSGKPIEKMLPELVLEPGNNWKLESKSEIQQIFDPQQVLSQ
                     PNRNGRNLSGKICGASGHRTLFVQLTQGQMTWWQPVNIEIRVPKATEKIAFAEVEAAT
                     CETVNIDKLFNDSVSRIFENKYLSPRSPYTTLQIPTQGIGEWCHPKETAQIDDSGLRK
                     LIQNNILQTKKGVSFRTPATGRNIAFTTLWDNFPTKVEIPLSGSASHAYLLMAGTTNQ
                     MQSHFVNAKISVEYTDGMRDTLELVNPENWCPIEQDYYVDGKAFSIKAPRPYRLHFKS
                     GLVSNDLGKDLKISGVYGRAIDGGAGILLDMPLNKGKKLRKMQLETIANEVIIGLMSL
                     TLQR"
BASE COUNT         1098 a          807 c          794 g         1231 t
ORIGIN      
        1 gatagccaga taaccataaa ccaggtaagg tttggtggct gtaagtgtgg tgtcgttcac
       61 cacatatttg tttttcagca gaatcatatc ctgtccgaaa gcctgcagtt tgatgtcctg
      121 gttcactccg ttagtttgga aagtcaacga gtcttcgata agcacgggcg agttcgcatc
      181 ggttgggtca acctttacgc tcataaaaat aaaaaggctg tcgtttgcac gtatctcaat
      241 atcccggaat tggttgtcgg cactcacgct tccgtccaca ttcattttga acgacgaatt
      301 tcttccgccg gcaatgccga tacgactgat tttgagagcc accttgttgc ggttgaaaac
      361 aagtattttc gcagtggcac tgcccaaggt tgtgaaaacg gtgtcgaaag tcagcgtgtc
      421 ggttgaaaac tccagtttgt atttggggtt tgtggagaaa ttctcgtcgc tgcatccaga
      481 gaatccgaat gtgattaaca gtgaggcgaa aagaagaatt gccggaaaaa atattttgtg
      541 tatagatgtc atatcgtctg caatgcgttt gctaaaccta aacgtgaaaa tgataaaatt
      601 attttatgat tatagggatg tcctacttga tggatttaat tgctttactt ttttccttga
      661 tgaaaaaagt aacaaaaaaa tcaagactga tggctgcttc gctcgaaaaa ctttcgctcg
      721 gaggactgaa atctcccaaa ctcctccctt cggtcgtcaa acagggatat ttctacgtcc
      781 ccctcacttg tttttcgact caccagccaa ggtcaatcct tgctatgaga ctgaatgttg
      841 acattaggga gttttgcata taatcatttt atttttcgca aatttactgc aaaagatgac
      901 tttatcataa taatggctta tatttgtata tataaatttt aaaattattg aatatggcaa
      961 gtcgtagaaa actgaaacaa accatccagt ttgtttcttc cgaattgatt accgatattt
     1021 attttcgttg tttgatgtca aaagaggttg aagatcaaaa agttgatgat ttggtggtga
     1081 aaattatggc attaacccgc gagtacattt tacgcgttaa ccgccccgac ggtaaagata
     1141 atccgaaact ggttaaagct tatttccgca aattatattc tgactggcaa gcagccatgg
     1201 aacaaatagt taaagaaata gaaacaattt aatttccgcg ggattaaagt ttgttttaaa
     1261 gcagaactgc aattggattc caattgcagt tctgcttttt tatactattc aaagttaaac
     1321 gataaggtaa tcatacgtga ggtcaacttt gtcagagcct gtgtaaattt cttattcgca
     1381 tccacctggg gtacataatc atgattgagc atgtcattga atccaatggc aaatttcaac
     1441 tccggagcca gcttgaaaaa tgagaagtaa atatcgcaac caacaccaaa ttcggtgtaa
     1501 aagtcaatag gcttcaataa caccctgaca tcattcgccg cactttgtcc caaatcgtaa
     1561 tacatgcctc ctccccagag caggtatgga cggtaattgc ctttccgctc ggcgctgtac
     1621 ttcaaatata aaggcatgca aataagtatt gaggatacag aagtagaatc caggacacca
     1681 ccgggaaatt tatagttcag ctgccgttgc ccaaagttca gggtaggagt gaagcgtagg
     1741 ttcagataac ggttcagcct taagtcgcta atgattccca ctgaaaagcc cggccttaag
     1801 tccgatacag ctacactgtc tttggaattg attccaaaat ccatggcgtt gaaacccaat
     1861 gaaaatccga aatgaataaa tttaccatct acgtaaggaa gatttccctg tgcccttgat
     1921 gccggactta tacagactat cagaaatgaa atcagtgcaa ttctttttat cttattcata
     1981 ggcctgtttg tcatattagt aatataggaa cgtgcaaaaa taccgattat tgcacaatcc
     2041 tgcaaggcaa ttatattcag tcgcaaggta aacgcatcga aagtttaagt ttaaatgtca
     2101 tttgctaata cttgctaacg accgacctcg tccaatgagc cgaaaaacga gtgaaatagg
     2161 cggttaagaa tcgtcctgtt tgagctcaga cgtattccgt cggagtgagt ttggacgatt
     2221 tgagcctatt gagcgtaagt ttttcgagtg aagtgggcgg agtcttgact ttttttgcct
     2281 actttttggc gtcaaggcaa aaaagtaggt ggggttttag gggcaaagcc cctgatcccg
     2341 ttgataatat ataaatgtaa cttgtagtgc attgagaaaa tatctttgat atcttattgg
     2401 ggtttcaccc caaaccccac ttcatttttt ttcttgataa aaaaaacgaa gcaaaaaaaa
     2461 tcaagactcc gcccacttca ctcaaaaaac tagcgttcga aaagctaaaa tcctccaaac
     2521 tcctccctgc ggtcgtcaaa caaggagtat ttttgcactt ttagcttcgc tgaccgttgg
     2581 ttctcacttg ttttttggtt caccgggcga ggtcactcgt tagcaaacag tgtgcaattc
     2641 aatattttta tctttttatt gaaaatatat atataaactg cactttgggt taaatcaaat
     2701 cttattttaa acgcgtttgc actgtattaa atacattctt taccgttgca atgtcaatga
     2761 cattaatcct ataataactt cgttggctat agtctccaat tgcattttac gcaacttctt
     2821 gcctttgttt agtggcatgt ccaacaggat tccggctcca ccatctatcg ctcttccgta
     2881 aacgccacta attttcaggt cttttcccag atcattgcta accaaaccgc ttttgaaatg
     2941 caaccggtac gggcgtggag cctttatgct aaatgctttg ccatccacat aataatcctg
     3001 ttcgatggga caccagtttt caggatttac caactccagc gtgtcgcgca ttccatcggt
     3061 atattcaacg ctgattttag cattgacaaa atgactttgc atttgattgg ttgtaccggc
     3121 cattagcagg taagcatgcg acgccgaacc gcttaacgga atctctactt tcgttggaaa
     3181 attgtcccaa agcgttgtaa atgcaatgtt tcgtccagtg gcgggtgtac ggaatgaaac
     3241 gccttttttt gtttgcagta tgttattctg aatcaattta cgtaaaccgg aatcgtcaat
     3301 ttgggctgtt tctttcggat ggcaccattc gccaattccc tgtgtcggaa tttgaagcgt
     3361 ggtgtatggc gaacgaggag acaggtattt gttttcaaaa atacggctta ccgaatcatt
     3421 gaatagtttg tcgatattta ctgtttcgca ggttgcggct tccacttctg caaacgctat
     3481 tttttctgtt gctttcggaa cgcggatttc gatattcacg ggttgccacc aggtcatttg
     3541 tccttgtgtc agttgcacga aaagtgtccg gtgtcccgaa gctccgcaaa ttttaccgct
     3601 taggtttctt ccattccggt ttggttgact caaaacctgc tgtgggtcga aaatctgttg
     3661 gatttctgat tttgactcca acttccagtt atttcccggt tcgagaacca attcgggcag
     3721 catcttttct atgggttttc cactccacac aatttctatt ttaccaggtt cagtaactga
     3781 tatgctgatt acaggatatt cgcctgcagt ttctactaat ttccaggctg cggttttccc
     3841 atttatgatt acagatgaaa tactttcata ataagctttt acctgtagtt caacgaccag
     3901 tttcttctca aaatgttggt tgatagtata
//
LOCUS       DATDNM010000291         2079 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1531058, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000291 DATDNM010000000
VERSION     DATDNM010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2079
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1531058"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..194)
                     /locus_tag="VI413_04915"
     CDS             complement(<1..194)
                     /locus_tag="VI413_04915"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0006555 - methionine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HEY6913997.1"
                     /translation="MSVVEKIRSAKSTAFSFELLPPLKGNGIETVYRTIDTLREFDPK
                     YINITTHRSELVFKENTPGQ"
     gene            complement(452..1429)
                     /locus_tag="VI413_04920"
     CDS             complement(452..1429)
                     /locus_tag="VI413_04920"
                     /inference="COORDINATES: protein motif:HMM:NF025608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009976 - tocopherol cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tocopherol cyclase family protein"
                     /protein_id="HEY6913998.1"
                     /translation="MIKSARAIFHPEQFQGWGKTNQYFEGWYFKVVNADETEAFAFIP
                     GIAMDKNGLQQSFIQVLDGKRRTAEYHKFEATEFQPQPGKFEIRIANNFFSSDSLQID
                     LPNALGELKFSEQTPWPNPWYSPGIMGPYTFVPFMECYHGILSMDHSISGELTIQGKT
                     IDFTNGRGYMEKDWGRSFPSAYFWMQTNHFSKPGISVKASVAKIPWLGSSFTGFIAGV
                     SMRNRLIQFTTYNGTRLLRSFADNDKVELIMLNKNYRLEILAHREAVTQLASPISGLM
                     TGRIEESMTSNIEVLLSERKSKTILLHEIGRNAGLEVAGKIEEIMIISA"
     gene            complement(1474..>2079)
                     /locus_tag="VI413_04925"
     CDS             complement(1474..>2079)
                     /locus_tag="VI413_04925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain dehydrogenase"
                     /protein_id="HEY6913999.1"
                     /translation="MVPYKLTKDGFESQIGTNHLGHFALTGQLLDLLKRTPKSRVVNV
                     SSMAHKSGVMDFDNLLYINGEGYTPIKAYSRSKLSNLLFTYELQRFFEANKLDCIALA
                     AHPGVSDTNLFNHAAPKWLMKILRPLFLLMVQPADMGVLPELRASVDPNAKGSEYYGP
                     NGKREIKGYPVLVEPTKEARDIEAARKLWEISEKLTSVVYN"
BASE COUNT          554 a          401 c          431 g          693 t
ORIGIN      
        1 aattgtccgg gagtattttc tttgaaaacc aactcgctgc ggtgagtggt gatattaata
       61 tatttagggt cgaattcacg taatgtgtcg atagttctgt aaactgtttc aatcccgtta
      121 ccttttaacg gaggtaataa ctcaaatgaa aaagctgttg actttgcact tctaattttt
      181 tctacaacac tcatgaataa atcctaatta aatacttatg atacttatac tcaaaatttg
      241 cctgcaaaag tacaattttt ttttcatatt ggcagtcata cagatgtaat agttaacagc
      301 ctgtgagaaa ttccagcctg atttttagtt ttaaaagaca atattgggga taattaaatg
      361 aaaacaaagc caatcttcag tcagatagtt tacgacaatt tgcgtgtgga ttttattatc
      421 agcggctatt taacctttga aatcaacctt attaagcgga aataatcatt atttcttcaa
      481 tttttccggc aacttcgagg cctgcatttc gtccaatttc atgtagcagg atggttttgg
      541 attttctttc tgaaagcagt acttcgatat tggaggtcat gctttcttcg attcgtcctg
      601 tcataagtcc ggaaatcgga gaagcgagtt gggtgactgc ttcgcggtgg gcgagaattt
      661 ctagacggta atttttattg agcatgatta attccacttt gtcattgtct gcaaatgatc
      721 tcaataatct ggttccgttg taagtggtaa attgtatgag gcggtttcgc atggatacgc
      781 cggcaataaa gcctgtgaat gagctgccca gccatgggat ttttgcgaca gatgctttca
      841 cagaaattcc cggtttgctg aaatggtttg tctgcatcca aaagtaggca cttggaaacg
      901 atcgtcccca gtctttttcc atgtatccgc gtccatttgt aaaatcgatt gtttttccct
      961 gaattgtcag ctcgccgctt atactgtgat ccatgcttaa aatgccatgg taacactcca
     1021 taaacggaac gaaagtgtac ggtcccatta tgccgggtga gtaccatggg tttggccaag
     1081 gcgtttgttc tgagaatttt aattccccca gggcattggg caaatcgatt tgtaaagagt
     1141 cggatgaaaa aaagttgttg gcaatacgaa tttcaaactt acctggttgt ggctgaaatt
     1201 cggtggcttc gaatttatga tattcagctg ttcgtctttt tccatccaaa acctgaataa
     1261 atgactgttg caatccattt ttatccatag caataccggg aataaaagca aacgcttctg
     1321 tttcgtcggc attcaccact ttgaagtacc agccttcaaa atactggtta gtttttcccc
     1381 aaccctgaaa ttgctccgga tgaaatatgg cacgtgcaga ttttatcatt cgtaaggttg
     1441 ttgattttga actgcaggat tgtgtttggt atgctaatta taaactaccg aagtgagttt
     1501 ttcagatatt tcccaaagtt ttcgggctgc ttcaatatcc cgggcttctt ttgtcggttc
     1561 caccaataca ggataacctt ttatttcgcg ttttccattt ggcccgtagt attcgctacc
     1621 ttttgcgttt ggatctactg aagcccgtaa ttcaggcaaa acacccatgt cggccggttg
     1681 aaccataagg aggaataaag gtcttaatat tttcattagc cattttgggg ctgcatgatt
     1741 aaaaagattt gtatctgaaa cgcccggatg ggctgccaaa gcaatgcaat ctagtttatt
     1801 tgcttcgaaa aatcgttgca attcgtacgt aaaaaggagg ttggataact tagaccggct
     1861 gtaagctttt attggtgtgt atccttctcc attgatatat agcaggttgt cgaaatccat
     1921 tacgccgctt ttgtgtgcca tgctgctaac gtttactact cttgatttcg gtgttctctt
     1981 caataaatcg agcaattggc cggttagagc aaaatgtccc aggtgatttg ttccaatctg
     2041 gctttcaaaa ccatctttgg tcagtttgta gggaaccat
//
LOCUS       DATDNM010000292         3648 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_783935, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000292 DATDNM010000000
VERSION     DATDNM010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3648
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_783935"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2429
                     /locus_tag="VI413_04930"
     CDS             <1..2429
                     /locus_tag="VI413_04930"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914000.1"
                     /translation="IIKVSNTVSNNGSWFTDNSNNTVEYTGTSQNITLPAGAPNYHNL
                     VLSGNDTINFPNSALCIDGDLIIGSNITTNINQNLTVKGDFTNNSPNFTNNAGTITFN
                     GTKNQSINGTGTTIFKKLTIDNTGYTVSAGSSFGVLDTLKLNSGSVLDMESQSLTAVG
                     TISGSGTLTTQNTGTSPLPADKTWSCNVIYNNQTAAQSVAAGTYNNLKISNPIGANAS
                     GTINATTLTIDSRAILHMGTNILNSITTNNGTGTLTTQNTGSTPIPTGKTWTSQVVYN
                     GSEAQTAVKGTFNSLIIDNATGVSVANNDSISVKGYLFINNSKKLVIPTNTVMNAQTI
                     SNNAGASGITIKSDSTAANGSLIFHNSAGSPVSATVEMFSKAFALDYNPTTKTYSNYK
                     WEFFGVPLQSIVPFPIFNGSYIRKHSESGTSSATHWLTVSNSTVLTPVDGYEITQPIA
                     KTITFQGQLVNSDYTKTLPYTPGSTFIGQSVLSNPYTAAIDIAQLNFGNGTDATVYIY
                     NTGSIGDWSKSSDENSAGQYLAIPKGVAALRMEGFQWKIPSMQGFLVKTTSTSTLGIP
                     YSAVISKNTDRQKVRSSSSSSSNVYTKIDVAGTRYSDKMWIITNPTCSHGFDNGWDGT
                     KFLGSSLAPQIWAMETAGDYQVNGVDNINNTSLAFKSGENTTYTLTFTHESSTSAYPS
                     LYLVDLLDNHITDITASGSQYTFNSNQTSTPTTARFKIVTNFGITTEEGQLSNSLNVF
                     NSMNTIYVNNNSSLKGEVIICDITGRYIQKYPFNPNGLTTIATDLTTGVYLMRATTSE
                     NENIQKVIIK"
     gene            complement(2566..3504)
                     /locus_tag="VI413_04935"
     CDS             complement(2566..3504)
                     /locus_tag="VI413_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY6914001.1"
                     /translation="MKQLLFRNGDIFPTLGLWTWLSRKIEVYDAVLEAVRLGYRHIDC
                     AYIYQNEVEIGKALKFCFATGMVTREELFITSKLWNSDHAPERVEAAIRKSLSDLQLE
                     YLDLYLIHWPIAFKTGHEQAKDADDLLSLEEMPLEITWEAMEKVQELGLARHIGVSNF
                     NIPKLKKLIDMAKVKPEVNQVELHPYFQQNELVQFCQENGILVTAFSPLGSRRLINED
                     DSIAKNDTILKIAEKHSCLPTEVILAWGMKRGTAVIPKSVNSTRIRDNYESIYVNLDE
                     QDMMEIAKIDRNYRLAKGLYCVMPDGCYTLNSIWID"
BASE COUNT         1248 a          734 c          623 g         1043 t
ORIGIN      
        1 gtattatcaa ggtcagtaat acagtttcta ataatggatc ctggtttacc gacaatagca
       61 ataatacagt tgaatataca ggaacaagtc aaaatattac gcttcctgcg ggcgctccaa
      121 attatcacaa tcttgtatta agcggcaatg acactataaa tttcccaaat tcagcattat
      181 gcattgatgg agacttaatt attggtagca atataacaac gaacatcaat cagaatttaa
      241 ccgtgaaagg agacttcaca aataacagtc ctaactttac gaataatgcc gggacaatta
      301 cattcaatgg aactaaaaat caaagcatta acggaacagg aacaactatt ttcaagaaac
      361 tgacaataga caataccggt tatactgtta gtgcgggaag ttcatttgga gttttagaca
      421 cactaaaatt gaactcaggt tcagtactcg acatggaatc tcaatcatta accgctgttg
      481 gaactatatc cggttctgga acactgacca ctcaaaacac aggaacttca ccgcttccag
      541 ctgataaaac ctggagctgc aacgttattt ataataacca aacagcagcc caatcggtgg
      601 cagcaggcac ttataataat ttgaaaattt caaatccaat cggtgcaaat gcttccggaa
      661 caataaatgc aaccaccctg acgattgata gtcgggctat attacacatg ggaacaaata
      721 tcctgaacag tattacgact aataatggga caggaacact gacaactcaa aatacaggct
      781 caacccccat accgaccgga aaaacatgga caagccaggt tgtgtacaac ggttctgaag
      841 cacaaacagc agtcaaagga acatttaaca gtttaattat tgacaatgca accggagtaa
      901 gtgttgcaaa caatgatagc atttctgtta aaggttattt gtttataaac aattcaaaaa
      961 agttggttat tccaactaat acagttatga atgcgcaaac catttctaac aatgccggag
     1021 catcgggaat aactattaaa tctgactcaa cagctgcaaa tggtagctta atattccata
     1081 actctgccgg ttctccggta tcggctacag ttgaaatgtt ttcaaaagcc tttgcgttag
     1141 attataaccc gacaacaaag acatattcaa actataaatg ggaattcttt ggtgtgccgc
     1201 tccaatcgat tgtacctttt cctattttta atggatctta tataagaaag cacagtgaat
     1261 ccggaacatc atctgcaacg cactggttaa cagtaagcaa ttctacagtt ttaactccgg
     1321 tagacggtta tgagatcacc cagccaatag caaaaacaat cactttccag ggtcaattgg
     1381 tgaatagtga ttacacaaaa actctaccgt acacacctgg atctaccttt atcggccaaa
     1441 gtgttttaag caatccttac actgcagcta ttgatatagc tcaactgaat tttggtaatg
     1501 gaacagatgc aacagtgtat atatacaata caggttctat tggggactgg agcaaatcct
     1561 cggatgagaa tagtgccgga caatacttag caattcctaa aggtgtagca gcattgagaa
     1621 tggaaggttt ccagtggaag attccatcaa tgcagggttt tctggtcaaa acaacaagca
     1681 cttcgacact aggaattcct tacagcgcag taattagtaa aaacactgac agacaaaagg
     1741 tacgaagcag cagtagttca tcttcaaatg tttacacaaa aatagatgtt gccggaacac
     1801 ggtattcgga caaaatgtgg attataacca accccacctg ttcacatggg tttgataatg
     1861 gatgggatgg aacaaaattc cttggttcga gtttggcccc acaaatctgg gcaatggaaa
     1921 ctgccggaga ttatcaggtt aatggtgtgg ataatatcaa taatacttct ctggcattca
     1981 agagtggaga aaatacaaca tatacgttga cgtttacaca tgaaagttca acatctgctt
     2041 atccgtcatt atatttggtt gatttactcg ataatcatat cactgacatc actgccagtg
     2101 gaagtcaata tacattcaat tcgaatcaaa ccagtactcc tacaactgcg cggtttaaaa
     2161 ttgtgacaaa ctttggaatt acaacagaag aaggacaatt atccaactcg ctgaatgtat
     2221 tcaattcaat gaacacaatt tatgtaaaca acaacagcag tcttaaaggc gaggtaatta
     2281 tttgtgatat tacaggaagg tatatccaga aatatccttt taatccaaac gggttaacaa
     2341 cgattgcaac agacttaaca accggagtat atctaatgag agcgactaca tctgaaaatg
     2401 aaaatataca aaaggtaata ataaaataat catttacagg aaataataaa acaaccattt
     2461 atattgcagc aagccctttt aaaagtcaaa tcttttaaaa gggcttacta ttttcttaca
     2521 atcttttgag aaataacaac cagaaattga ttggcttaat caacatcaat ctatccaaat
     2581 actgttcaac gtataacaac catcgggcat tacacaataa agtccttttg caagtcgata
     2641 gtttctgtct attttcgcta tttccatcat atcctgttcg tccaggttca cataaatcga
     2701 ttcataatta tcacggattc tcgttgaatt tacagatttt ggaatgactg cagttccccg
     2761 tttcataccc catgccagta ttacctcagt aggcaggcaa gaatgctttt ctgcaatttt
     2821 aagtattgtg tcattttttg caatactatc atcttcgttt attaaacggc gacttcccaa
     2881 aggtgaaaat gctgttacca gaatgccatt ttcctgacaa aactgtacta attcattttg
     2941 ctggaaatat gggtgtaact caacctgatt aacttctggt tttacttttg ccatatcaat
     3001 cagttttttc aattttggga tattaaaatt agaaacacct atgtgcctgg caagccccaa
     3061 ctcttgaact ttttccatgg cctcccaggt tatttccaac ggcatttctt ccaacgaaag
     3121 taaatcatct gcatccttcg cttgttcatg tcctgttttg aaagctatag gccaatgaat
     3181 caaatacaaa tccagatatt ccaactgtaa atcggagagt gatttccgaa tagctgcctc
     3241 taccctttcc ggagcatgat cgctattcca aagcttcgat gtaataaaaa gctcttcacg
     3301 cgtaaccatt ccagttgcaa aacagaactt taacgccttg ccaatttcca cctcgttctg
     3361 atagatataa gcgcaatcga tatgcctgta tccaagacgt actgcttcaa gaacagcatc
     3421 gtaaacttcg atttttctgg acaaccaagt ccacaatcca agtgttggaa atatatcgcc
     3481 gtttcgaaat aaaagttgtt tcatactatt gcatttttaa tttaaaacac taaaattgaa
     3541 tggattgttt actgttaaac aaaaaatgga tacgaaaata ttatcgtaaa aatataaaaa
     3601 ctgttttaaa tcctctgaat tcgcataaat tcaaagcaat ttgcttat
//
LOCUS       DATDNM010000293         2431 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_570978, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000293 DATDNM010000000
VERSION     DATDNM010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2431
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570978"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(33..>2431)
                     /locus_tag="VI413_04940"
     CDS             complement(33..>2431)
                     /locus_tag="VI413_04940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009039603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6914002.1"
                     /translation="TADAASILNLDHKAALMNEWNPQRGSRKTGRLKAEIKNPLKWTA
                     ETPNLYTLNITLEDSTGKIVERVRQRIGFRSVEIKDGQMLVNGKPIRLRGVNRHEHDP
                     KLGKVMTEALMLKDILLMKQANINAVRTCHYPNVTRWYELCDSLGLYVMDEADIEEHG
                     LRGKLASDPDWALAFLDRAIRMAERDKNYPSVVMWSMGNEAGYGPNFAAISAWLKDFD
                     PTRPIHYEGAQGLNGEPDPSTVDVISRFYPRVQQEYLNPGAGGKEDPERPENARWERL
                     LSIAQRTNDNRPVMTSEYAHLMGNSGGNLQDYWDEMYSNKRMLGGFIWEWADEDIFKT
                     LLNGKTQVSYGGDFGDYPNLKTFCIKGVVTSDRQTTPKYQEVKKVYQPVGIYKQGDKL
                     LIINRNHHTSLSQYRCVWTMTLDGKVAKSGDIILPNVFRGDSVFVSITDIEKAFKKCL
                     IPPLGGQGADIQLKISFLLKENTAWTKSGYEVAYEQFELQNGKLVSTEISNKGKLNVE
                     ENVEILKVSGNGFSMAWNTKNGNLTSLIYNGKEVLAQKAKEFEKQPVVQVFRAPTDND
                     KGFGNWLAKDWKLQGLDSPKVTIDYVRHSIRKDGALVVEVLQTNQYKNGKIETKLIYK
                     VTSDGQIDLECRFNPTGNLPELPRLGIALALNPDYHNFSWYGRGPQENYPDRKTSALM
                     GLWNGKVAEQAEKYPRPQETGNKEDIHFLSLTNAKNQGVKVEAVDKTFSASALNFSVN
                     DLANEAHECNLVPRKEVILSMDCAVLGLGNSSCGPGVLKKYAIEKKEHVLHVRIESTR
                     "
BASE COUNT          599 a          603 c          476 g          753 t
ORIGIN      
        1 gttgttttca taatcattta tttaatttat atctaacggg ttgattctat tctgacatgc
       61 aatacatgct cttttttttc aatggcatac tttttcaaaa caccggggcc gcaactgctg
      121 tttcccaatc ccaacacggc acaatccatg ctcaggatta cctctttgcg tggaaccaaa
      181 ttgcattcgt gagcttcatt agccaagtcg tttacagaaa aattcaacgc cgaagccgag
      241 aaagttttgt ctactgcttc tacttttact ccctgatttt tagcatttgt caaactcaga
      301 aaatgaatat cttccttgtt gccagtttcc tgcggacgcg ggtatttttc agcttgttcc
      361 gctacttttc cgttccataa tcccatcaaa gccgaggttt tgcggtcggg atagttttcc
      421 tgcggaccac ggccatacca actgaaatta tgataatccg gatttaaagc caaagcaatt
      481 cccagccggg gcaattcggg taaatttcct gtcggattga aacgacactc caaatcaatt
      541 tgcccatctg aagtaacttt ataaataagt ttggtttcaa ttttcccgtt tttatactga
      601 ttagtttgaa gaacttccac caccaatgca ccatctttgc gaatcgaatg acgaacgtag
      661 tcaatcgtta ctttgggtga atccaatccc tgcaatttcc agtctttggc cagccagttt
      721 ccaaaacctt tgtcgttgtc ggtaggagca cgaaacactt gtaccacagg ttgtttttca
      781 aattccttcg ctttctgcgc aagaacttct ttgccattat aaatcaacga agtcagattt
      841 ccatttttcg tattccaagc catagaaaaa ccattaccgg aaactttcag tatctccaca
      901 ttttcctcta cgttcaactt ccctttattt gaaatttctg ttgataccag tttcccattt
      961 tgcaattcaa attgctcgta agccacttca taacctgatt ttgtccaggc tgtattttct
     1021 ttaagaagga aagatatttt caattgaata tcagccccct gaccccctaa agggggaata
     1081 agacattttt taaaagcctt ttctatatca gtgatagaaa caaagacaga gtctccacga
     1141 aagacattcg gtaatataat atctccactt ttggctactt tcccatccag agtcatagtc
     1201 caaacacaac gatattgcga caacgaagtg tgatgattcc ggtttataat caataattta
     1261 tcgccttgtt tgtaaattcc aacgggctga tatacttttt ttacttcctg atatttcgga
     1321 gtggtttggc ggtcgctggt aactacgcct ttgatacaaa acgttttcag gttcggataa
     1381 tcgccaaagt cgccaccgta cgaaacctgc gtttttccat tcagcaatgt tttgaaaata
     1441 tcttcatcag cccattccca tataaatccg cccaacatgc gtttgttaga atacatttcg
     1501 tcccaataat cctgcaggtt tccaccggaa tttcccatta agtgagcata ttcgctggtc
     1561 atcacggggc gattgtcgtt ggtgcgctgc gctatgctca gcagccgttc ccaacgcgca
     1621 ttttcaggtc gctcgggatc ttcttttcca ccggctccag gattaaggta ctcttgttgc
     1681 acacgcggat agaagcgact tattacgtcc accgtcgacg gatcaggttc accgttcaag
     1741 ccctgcgctc cttcgtagtg tatcgggcgg gttgggtcaa aatcctttaa ccacgccgaa
     1801 atggcagcaa agtttggtcc gtatccagcc tcgttaccca tgctccacat caccacagaa
     1861 ggatagtttt tgtcgcgttc ggccatgcgg atagcccggt cgaggaatgc cagtgcccaa
     1921 tcgggatcgg aagccagttt accccgcagc ccgtgttctt caatatcagc ttcgtccatc
     1981 acgtataacc caagcgagtc gcagagctcg taccagcggg tcacattcgg gtaatggcag
     2041 gtgcgcaccg cgttgatatt ggcttgcttc attagcaaaa tatccttcag catcaacgct
     2101 tcggtcatta cttttcccaa tttgggatcg tgctcatggc ggtttacacc acgtaaccga
     2161 ataggtttac cgtttaccag catttgcccg tctttaatct ccacagagcg gaagccaatt
     2221 cgctggcgaa cgcgttcaac tatttttccg gtgctgtctt ccagtgtaat attgagtgtg
     2281 tataaattgg gcgtttcagc cgtccatttc aacggatttt tgatttccgc tttcagccga
     2341 cccgttttgc gtgatccacg ttgcgggttc cattcgttca tcaaggctgc tttatggtct
     2401 agatttagaa tggaagcagc atcggcagtt a
//
LOCUS       DATDNM010000294         2409 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2066094, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000294 DATDNM010000000
VERSION     DATDNM010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2409
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2066094"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            91..543
                     /locus_tag="VI413_04945"
     CDS             91..543
                     /locus_tag="VI413_04945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY6914003.1"
                     /translation="MIKLKQEQFLPITLNQAWQFFATPRNLNEVTPDDMVFEIVSDLP
                     KSMYAGLLINYRLKPMFNIPVDWCTEITHIKEKEYFVDEQRKGPYRIWHHEHHFEVVE
                     GGVLMTDLLHYDIGKSLFGWIAGKLFVHKKVKAIFDYRYKTLQTYFKK"
     gene            547..1017
                     /locus_tag="VI413_04950"
     CDS             547..1017
                     /locus_tag="VI413_04950"
                     /inference="COORDINATES: protein motif:HMM:NF015060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TspO/MBR family protein"
                     /protein_id="HEY6914004.1"
                     /translation="MRSLITKIIVCALLCLALGTASSFSTMESISTWYQFLNKPAFNP
                     PNWIFGPVWTILYIMMGISVALVWHTPHADRRKAMIFFAVQFILNLCWSFLFFNLHLP
                     GVAYFEIMAMCISIALTIIAFYKINKTAALLLLPYLCWVLFATILNYSIWILNR"
     gene            1111..>2409
                     /locus_tag="VI413_04955"
     CDS             1111..>2409
                     /locus_tag="VI413_04955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914005.1"
                     /translation="MKKLRNLSLVLIAGLVLVYMYMPTVNFGFTGFAVLLMVLTGIWV
                     VLNNPFSVIQSQNNTPTIKIGKPGKVSFILLAVLAAYITIVPAITSWALFHTSEYRNL
                     IGKVETESNLSSHMLPISIDKIRVVDQSLAQLLGDKVLGSQSALGSQVVLGTFNIQKV
                     NNDLYWVAPLLHSGFFKWQKNMQGTNGYVMVNACNERDVKLVQEIGGQKVYIKYQSEA
                     YFFSNLQRYLYFHGYWNVGLTDYSFEIDDAGTPYWVVTKYKKTIGFNGEEAQGVAIVN
                     AQTGEIKDYTVENTPKWVDRIQPGNFIENQLNDWGNFVKGYWNFSNEGKLKITENVSM
                     VYGEDNNAYWYTGLTSVGADESTVGFMLVNTRTKKAVWYKQSGATEYAAQNSAKGKVQ
                     EKGFSASSPIPYNINNIPTYVMTLKDNGGLVKMYAMVAIED"
BASE COUNT          734 a          486 c          495 g          694 t
ORIGIN      
        1 agaaaaaatt cgctaattga atctaaaaac atttctactg ctttacttgt taaacattca
       61 caaaaaaggg cttattaaaa caaactattt atgataaaac tcaaacaaga acagtttcta
      121 ccaattacgc tcaatcaggc ctggcaattc ttcgcaacac cccgcaatct aaacgaagtc
      181 acccccgacg atatggtttt tgaaatcgtt tcggacttgc ctaaaagcat gtacgccggc
      241 ttgcttataa attaccggct gaaacctatg ttcaacattc cggtggactg gtgtacagaa
      301 attacacata ttaaagagaa agaatatttt gttgacgaac aacgcaaagg accttataga
      361 atatggcacc acgaacatca ttttgaagtt gtggaaggtg gtgtgcttat gacagactta
      421 ttgcattacg atattggcaa gtcactattc ggttggatag cgggcaaatt attcgtccat
      481 aaaaaggtaa aagccatttt cgattaccgc tacaagactc tgcaaaccta tttcaagaaa
      541 taaaatatgc gctcattaat cacaaaaatc attgtctgtg ccttattatg cctcgcactc
      601 ggcacggcaa gcagcttcag cactatggag tctatttcca cctggtacca gtttctgaac
      661 aaacctgcgt ttaatccgcc caattggatt tttggcccgg tgtggacaat attatatata
      721 atgatgggaa tttccgttgc ccttgtgtgg catacccctc atgcagaccg gagaaaagct
      781 atgatatttt ttgccgtaca atttatactg aacctttgct ggtcattcct gtttttcaat
      841 ttgcatttgc ccggcgttgc ttattttgaa attatggcta tgtgcatatc tattgcctta
      901 actattattg ctttttataa aataaacaaa actgcagcac tcctgttact tccttattta
      961 tgttgggttt tatttgcaac catattaaac tatagtatct ggattttgaa cagataagct
     1021 ccatttttta atttatattt tctaaaatat ggttagttga aaattggatt gtatctttac
     1081 gcctttcaac aaaaacaaag ttttaccaaa atgaaaaagc tcagaaattt atctttagta
     1141 ctgatagccg gcctggtgct ggtttatatg tatatgccga cagtcaattt cggttttaca
     1201 ggtttcgcag tattgctaat ggttttaacc ggtatctggg tggtgctgaa caatccgttt
     1261 tcggttattc aaagccagaa caatacccca accattaaaa tagggaagcc cggcaaggtt
     1321 tcatttattt tactggcagt tttagccgcc tatattacta ttgtgcctgc aattaccagc
     1381 tgggcattgt ttcacacatc agagtatcgc aacctgattg gaaaagtaga aaccgaatcg
     1441 aatctttcga gccacatgtt acccatttcc attgacaaaa ttcgtgtcgt ggatcagtcg
     1501 ttggcacaat tgttgggcga caaggttctt ggctcgcaat cggcactggg aagccaggtt
     1561 gtactcggaa cattcaacat ccagaaagtg aacaacgatt tatactgggt ggctccgctc
     1621 ctgcactccg gctttttcaa atggcaaaaa aatatgcagg gcaccaacgg ttatgtcatg
     1681 gtaaatgcct gcaacgaacg cgacgtgaaa ctggtgcagg aaatcggtgg acaaaaagta
     1741 tatattaagt accaatcgga agcgtatttc tttagcaacc tgcaacgtta tttatacttc
     1801 catgggtact ggaatgtggg tttgacggat tattcgttcg aaatagacga tgccggaacg
     1861 ccttactggg tggttacaaa atacaaaaag accataggat ttaatggtga agaagctcag
     1921 ggcgttgcga ttgtcaatgc ccagacaggt gaaattaaag attacactgt agaaaacacg
     1981 cctaaatggg tagaccgcat tcagccgggc aattttatcg agaaccagtt gaatgactgg
     2041 ggtaatttcg taaaaggata ctggaatttc tccaacgaag ggaaacttaa aataaccgag
     2101 aatgtatcga tggtgtatgg cgaagacaat aacgcctatt ggtacaccgg tctgacttcg
     2161 gtgggtgccg acgaatcgac tgttgggttt atgctcgtaa atacacgcac caagaaagcc
     2221 gtttggtaca agcaaagcgg agctaccgaa tacgcagccc aaaattcggc caaaggaaaa
     2281 gtgcaggaaa aaggattttc ggcctcctct cctattccat acaatatcaa caacattcct
     2341 acttacgtaa tgacgctgaa agacaacggc ggactggtaa aaatgtatgc catggtggca
     2401 attgaagat
//
LOCUS       DATDNM010000295         2611 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1425759, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000295 DATDNM010000000
VERSION     DATDNM010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1425759"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1000)
                     /gene="buk"
                     /locus_tag="VI413_04960"
     CDS             complement(<1..1000)
                     /gene="buk"
                     /locus_tag="VI413_04960"
                     /EC_number="2.7.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047761 - butyrate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate kinase"
                     /protein_id="HEY6914006.1"
                     /translation="MFKILSVNPGSTSTKFAVYEGEKLVCLHTQRHSSDELKPYKTLT
                     EQCEFRKNVILERLKEDGIDLSELAAVVGRGGLVRPLGSGVYAVNDKLIHDLKYATQG
                     EHASNLGGIIAHEIASEIDNCRAFIADPVVVDEMQDVARISGLPIIPRRSQFHALNHK
                     AVGRKYAKLHGTSYEKLNLVIAHLGGGISVAAHRQGRVVDLNQGLDGYGPFSPERSGT
                     LDAGQLVKLCFSGKYSEAEIKKMLVGNGGLMAHLGTNEVQEVTSMIDEGNEHAKLVLQ
                     AMAYHVAKEIGAMIAVLKGDVDAVILTGGIAHSGFVVNYIERMISPIAKVVIYPGED"
     gene            1259..1726
                     /gene="rimP"
                     /locus_tag="VI413_04965"
     CDS             1259..1726
                     /gene="rimP"
                     /locus_tag="VI413_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005859398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly cofactor RimP"
                     /protein_id="HEY6914007.1"
                     /translation="MISKDSIYQVIEQFLADSEYYIVDVKVAPDNRISVEIDSFDGVS
                     LEYCIEVHRHIESQFDREVEDYELEVSSAGLTEPFKVIKQYEKNIGNEVETLTKTGKK
                     IAGILVEVRENEFVLQTERTEKQEGAKRKMTVVENLTFAYEDIKNTKYIIRFK"
     gene            1730..>2611
                     /gene="nusA"
                     /locus_tag="VI413_04970"
     CDS             1730..>2611
                     /gene="nusA"
                     /locus_tag="VI413_04970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002558741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HEY6914008.1"
                     /translation="MSKKETISLIDTFSEFKELKSIDRSTLISVMEESFRNVISKMFG
                     TDENYDVIINPDKGDFEIYRNRTVVADDDLEDPNVEISLTDAKKIDEDFEIDEEVTET
                     VNFLDFGRRAILTLRQTLSSKILELQKDNVFSKYSEKVGQIVSAELYQIWKKEMLLID
                     DEGNELYLPKSEQIPTDFYRKGDTVRAVVAMVENKNNNPKIILSRISPVFLERLFELE
                     VPEIHEGLITIKKIARIPGERAKVAVESYDDRIDPVGACVGVKGSRIHGIVRELRNEN
                     IDVINYTNNLSLFISRAL"
BASE COUNT          827 a          555 c          501 g          728 t
ORIGIN      
        1 catcttcacc gggataaata accactttgg ctataggcga aatcatacgt tcgatgtaat
       61 tcaccacaaa cccgctatga gcaataccac ccgtcagaat cacagcatcc acatcgcctt
      121 tcagcacagc tatcatggct ccgatttctt tggcaacatg ataagccatt gcctgtaaaa
      181 ccaacttagc atgttcatta ccttcatcaa tcatgctggt gacttcctga acttcatttg
      241 ttcccaggtg agccattaac ccaccattac caaccagcat tttctttatt tcagcttctg
      301 agtattttcc actaaaacaa agctttacca attgtccggc atcaagagtc cctgaacgtt
      361 ccggtgaaaa cgggccatag ccatccaacc cctgattcag gtccaccacc ctgccctgcc
      421 tgtgtgcggc aaccgaaatt ccaccaccta aatgcgctat taccagattc agtttttcgt
      481 acgaagttcc atgcagttta gcgtacttcc gacccaccgc tttgtgattt aatgcgtgaa
      541 attgcgacct tctgggaata atcggcaaac cgcttattct ggccacatcc tgcatttcgt
      601 ccactaccac cgggtcggca ataaaagccc tgcaattatc aatttccgat gctatttcgt
      661 gagcaataat tccgcccaga ttactggcat gttcgccctg tgttgcatat tttaaatcgt
      721 gaatcagctt gtcgtttaca gcataaaccc ccgaccccag cggacgcacc aaacctcccc
      781 ggccaacaac agctgccaat tcagacaagt caatcccatc ttctttcaac ctttccagaa
      841 tgacattctt acggaattca cactgctcgg ttaatgtttt atatggcttt aattcgtcgg
      901 aagaatgacg ctgtgtatgc aggcaaacca gcttttcacc ttcataaacg gcaaatttgg
      961 tagatgttga gcccggattg accgacaaaa ttttaaacat agcttttaat tattaacgga
     1021 aatatcagac aattttacat aacacaaaga tagttttaag taatgacata aatgcaaatc
     1081 gatatttgat ttttgtgaaa tttgaataat aataccatat tatcaacttt aattagccga
     1141 catagcattt tttattataa atctttgtat tataaagaat tattttgtac ttttgcactc
     1201 gaaataggat atggaggagg ggacaacagt cccctcgttt gttaaataac atttagatat
     1261 gatttcaaaa gattctatat atcaggtaat tgagcaattt ttagccgact cagaatacta
     1321 tatcgttgac gtaaaagtgg caccggacaa tcgtatttcg gttgaaatag attcattcga
     1381 tggtgtatcg ttggaatatt gcattgaggt acatcgacat attgagtctc aatttgatcg
     1441 tgaagtagaa gattacgagc tggaagtgag ttcagccgga cttacagagc cgtttaaagt
     1501 aatcaagcaa tacgagaaaa acattggcaa cgaggttgaa acattgacaa aaaccggaaa
     1561 aaagatagcc ggaatattgg tagaagttcg tgaaaacgag tttgtactgc aaaccgaaag
     1621 gactgagaag caggaaggtg ccaaacgtaa aatgactgtt gttgaaaacc ttacgtttgc
     1681 ctacgaagat attaaaaata caaaatatat tattagattc aaataagcca tgagcaaaaa
     1741 agaaactatt agcttaattg atactttttc ggagtttaaa gagctaaaaa gcatcgacag
     1801 aagtacatta attagtgtaa tggaagagtc gttccgtaat gtaatttcga aaatgtttgg
     1861 aaccgacgag aattacgatg tgattatcaa ccctgacaag ggtgacttcg aaatctatcg
     1921 caatcgtacc gtggtggctg atgatgacct ggaagatcca aacgtggaga tttcattgac
     1981 tgatgcaaag aaaatcgatg aggattttga aattgatgaa gaagttacag aaacagtaaa
     2041 cttccttgat tttggccgtc gtgctatcct tactcttcgc cagactttgt catctaaaat
     2101 cctggaactt caaaaagaca acgttttcag caaatatagc gaaaaagtag gtcagattgt
     2161 aagtgccgaa ttatatcaaa tctggaaaaa agagatgttg cttatcgatg acgaaggcaa
     2221 tgagctttat ttaccaaaat cggagcaaat cccaaccgac ttttaccgca aaggcgacac
     2281 cgttcgtgca gtagttgcta tggttgagaa caaaaacaac aaccctaaaa tcattctttc
     2341 acgtatttca ccggtgttcc tcgaaagact tttcgaactg gaagttcctg aaatccatga
     2401 aggcctgatt accataaaaa aaattgcccg tattccgggc gaacgcgcca aagtagccgt
     2461 agaatcatac gacgaccgta ttgatccggt tggtgcatgt gtgggtgtaa agggatcacg
     2521 tatccatggt atcgttcgcg agttacgcaa cgaaaacatc gacgtaatca attacacaaa
     2581 caacctgagc ctgtttattt cacgtgcatt g
//
LOCUS       DATDNM010000296         3503 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_998042, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000296 DATDNM010000000
VERSION     DATDNM010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3503
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_998042"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VI413_04975"
     CDS             complement(<1..705)
                     /locus_tag="VI413_04975"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914009.1"
                     /translation="MKKLILIFCSASVLLFTSCNDWLLEPSPGVTKLEDFFTVGKTAI
                     QVTNGAYVPLMWEFSSTYYPEWFIGDVASDDALKGGQSVGDMADAYDFENFKTNSNNG
                     FLLDFYRAQYQGISRCNLGLQQIPLMSTDSVMDTRVQKRLIGELKFLRAMYYFRLVRI
                     FGGVPLTTEPINSASDWKQPRATATEIYAQITSDLEGANAGLWKKSEYAVTDLGRATK
                     GAAQAMLLKTNLYLKNY"
     gene            complement(793..>3503)
                     /locus_tag="VI413_04980"
     CDS             complement(793..>3503)
                     /locus_tag="VI413_04980"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6914010.1"
                     /translation="LDQALQGRAAGVTVNANTGQPGAAASIRIRGIGSVMGGSDPIFV
                     VDGMITNNISFLSPNDIESTEILKDASSTAIYGSRGANGVILVTTKKGKEGKNNISLN
                     VYTGVQNRWNKLDLMQRDEFAKTLISLNNLTSEKNYFKNYGFNKWLSAYRLGTSPYYP
                     SVMSAANPTGMDYSTVETDWQEEVFHANALVQNYHLSFDGGTAKDRYTITASYFNQDG
                     TIIGSNYERLTLRINSSHKVKSWLNVGENLSFMSSTGRNAMNNSSSPGASVLSAALAM
                     APWDPTHYPAGSVNKDGKDLGGQIAASSNFRNVTNPFSMVENSSPVNNVERWVGDVFA
                     EITPFKGLVFRSAMNFDISNNRDKLFKKAYEYSSYDLSEKNFLQSSMTRYSTLIFENT
                     LTYSKSINKHSLTAMLGQTTEEYNYYNIGGSGASILNPTENNWYLSQTTENRTYAGDG
                     VARSRMFSLLGRLHYTYDNKYMITLNFRGDASSKFPENLWGYFPSAALAWRISEENWM
                     KGISNLDYLKIRAGWGRIGNANVPSDSFTPKMQNAGPTFVDYVLGTTQDLAGGAAMLT
                     IVNSGGKWETTEQISGGVDFGFFKNKLNGSVELFQRNTLDMLLPVKAPAQVGNRYDPI
                     ANVGTVSNKGLEITLDHQSKIGKLNYSINGNVSFISNSLISLNGGDVIYGDRSKSDKG
                     YALFSFWGYKYEGIYKTDAEALQYLNGYTAESTSYHAGDAKFADLNTDGKIDDNDKTN
                     LGNPFPWLTYGLNLGADYKGFDLQLFFQGVAGNEIYNAVRERTEGKGDVATLSTTMRN
                     VWSASNPNGTIPNPYGTTMNMANSSRFLESGSYMRLKNLQIGYTLPTKITKPANISRC
                     RIYLSGSNLLTLTGYTGYDPEVGTYGIDYGNYPQSRTVTVGINLDL"
BASE COUNT         1002 a          765 c          645 g         1091 t
ORIGIN      
        1 atagtttttc aaatacaaat tggttttcaa aagcattgcc tgtgcagctc cttttgttgc
       61 ccgacccaaa tcagtcaccg catattcgct cttcttccaa agacctgcat ttgcaccttc
      121 cagatcggag gttatctgtg cataaatttc ggtagcagtt gcacgtggtt gtttccagtc
      181 ggatgccgaa ttaattggct ctgttgtaag cggaacacct ccaaaaatac gaaccaaacg
      241 gaaataatac atcgctctca gaaatttcag ttcgcctatc aaacgttttt gaacccgtgt
      301 gtccataaca gaatcggtac tcataagtgg aatctgctgc agacccagat tacaacgcga
      361 aattccctgg tattgtgccc gatagaaatc gagtaaaaaa ccattatttg aattggtttt
      421 aaaattctcg aaatcataag catcagccat atcaccaaca gactgtccgc ctttcaacgc
      481 atcgtccgaa gccacatcgc cgataaacca ttccggataa taagtagaac taaactccca
      541 catcaaaggt acataagctc catttgtgac ctggatagca gtttttccca cggtgaaaaa
      601 atcttcaagt ttcgttacac caggcgatgg ctccaaaagc caatcgttgc aggatgtaaa
      661 gagcagcaca cttgctgaac agaatattaa aattagtttt ttcatactat tctttatttt
      721 atatcaatcc ttttgtaaag aggaaattaa tcttgttgtt taaattcaaa atgcaatttg
      781 ctattttgtg gtttataaat cgaggtttat acccacagtg actgtgcgtg attgcggata
      841 atttccataa tcaattccat aagttcccac ttcaggatca tagcctgtat aaccggttaa
      901 cgttagaagg ttgctgcctg atagataaat tctgcatcgg ctgatattag ctggttttgt
      961 gatctttgtg ggcaatgtgt aaccaatttg caggtttttt aatctcatgt atgatccact
     1021 ttccaagaaa cggcttgaat ttgccatgtt catggttgtt ccgtatggat tgggaatagt
     1081 tccgtttgga ttggatgccg accatacatt cctcatagta gtgcttaatg tagccacatc
     1141 tccttttcct tcggtacgtt cgcgaacagc attataaatt tcgttacctg caactccctg
     1201 gaagaataac tgcaaatcaa atcctttata atcagcacca aggttcaatc cgtaagttaa
     1261 ccatgggaat gggttcccaa ggtttgtctt atcgttatcg tcaatttttc catctgtatt
     1321 taaatctgca aatttagcat ctccggcatg ataagaagta gactcagctg tgtatccgtt
     1381 cagatactgc aatgcttctg catcggtctt atagatacct tcgtatttat agccccaaaa
     1441 tgagaataat gcatatcctt tatctgattt actacggtcg ccataaataa catcaccacc
     1501 atttaatgaa atcaggctat tactgataaa cgaaacattt ccattgattg aataattcaa
     1561 ttttccaatt ttactttgat gatcaagtgt gatttcaaga cctttattgc ttactgttcc
     1621 cacgttagca atcgggtcat agcggttccc tacctgagcc ggagctttta caggcaataa
     1681 catatccagt gtattacgtt ggaaaagttc tacgctacca ttcagtttgt ttttgaaaaa
     1741 tccgaaatcc acaccaccac tgatttgttc agtagtttcc cattttccac cgctgtttac
     1801 aatggtcaac atggctgcac cacctgccag atcctgggtt gttcccaata cataatcaac
     1861 aaatgtaggc ccggcatttt gcatttttgg cgtgaaacta tcacttggca cattggcgtt
     1921 accaattcgt ccccagcctg cgcggatttt caggtaatca agattagaaa ttcctttcat
     1981 ccaattttct tcacttattc tccaggcaag agcagctgat gggaaataac cccaaaggtt
     2041 ttcgggaaac ttacttgacg catcacccct gaagttaagg gtaatcatat atttattatc
     2101 gtaagtatag tgcaaacggc ccagcaagga gaacatacga cttctggcta caccatcacc
     2161 ggcataggtt ctgttttcag ttgtttggga taaataccag ttgttttcgg tcgggtttag
     2221 aatcgatgcc cctgagcctc ctatgttata ataattatac tcctcggtag tttgacccaa
     2281 catggcagtt aagctatgtt tattgatgct tttggaataa gtcagcgtat tttcaaaaat
     2341 caacgtacta tagcgggtca tgctgctttg tagaaagttc ttttccgaca agtcgtatga
     2401 agagtactca taagcttttt tgaacaattt gtccctgttg ttcgaaatat caaagttcat
     2461 ggccgagcga aaaaccaatc ctttaaaagg agtaatttcg gcaaaaacat caccaaccca
     2521 gcgttctaca ttatttacag gcgagctatt ttcaaccatt gagaatggat tggttacgtt
     2581 acgaaagtta gatgatgccg caatttgccc gcccagatct tttccatcct tgtttaccga
     2641 acctgccgga taatgtgtag gatcccaagg agccatggcc aatgctgcag ataaaacaga
     2701 agcacccggg cttgaactgt tgttcatagc attgcgtccg gtggatgaca tgaaagaaag
     2761 attttcaccg acgttaagcc aggattttac tttgtgcgaa ctgttgatac gtagagtcaa
     2821 acgttcgtaa tttgaaccga taattgtacc gtcctgatta aaataacttg cagtgattgt
     2881 ataacggtcc tttgctgttc caccatcaaa tgacaagtga taattctgaa ccaaagcgtt
     2941 tgcatgaaaa acttcttcct gccaatcggt ttcaacggtt gaataatcca tgcctgttgg
     3001 atttgcagca ctcatcacac ttggataata aggtgaagtt cccaaccgat atgccgataa
     3061 ccatttatta aaaccgtagt ttttgaagta atttttttca gaagtaagat tattcaacga
     3121 aatcaatgtt tttgcaaatt catcccgttg cataaggtcc aacttattcc atctgttttg
     3181 aactcctgta tatacattca atgagatatt gtttttacct tctttccctt ttttagttgt
     3241 aaccaaaatt acaccattgg caccccgcga accataaatg gctgttgatg atgcatcttt
     3301 caaaatctca gtagattcaa tatcattagg acttaaaaaa gagatattat tggtaatcat
     3361 tccgtcaaca acaaaaatag gatcgctccc tcccattacc gaaccgatac ctcgaatacg
     3421 aatagaagct gctgctccgg gttgaccggt gttagcattt acagttacac ccgctgcacg
     3481 tccctgcaat gcctggtcga gtc
//
LOCUS       DATDNM010000297         3787 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_571671, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000297 DATDNM010000000
VERSION     DATDNM010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3787
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_571671"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VI413_04985"
     CDS             <1..504
                     /locus_tag="VI413_04985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914011.1"
                     /translation="YQEYNLKKISIGVISVVVLFCSYLVYISIPVDTVKNFLTEKDMK
                     NYEIERYGEKMKEFASTESMALEVFNMSDQTPKEELLKEIKNRGIYYRKDNILLIKQV
                     ETFNLPPFLHNRNKLLLQYCNLRIKSYELIYKKVESETDELLPQIQECNKDIEKIIAQ
                     LSDKKEE"
     gene            810..2714
                     /locus_tag="VI413_04990"
     CDS             810..2714
                     /locus_tag="VI413_04990"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009596857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY6914012.1"
                     /translation="MKKNQFLLVLLAVISVIGVSTSFTGPEVTKAPLIDMKMFFKNGE
                     KDNFQISPDGKYYSYIAGYKDMMNVYVRKIGDKSAVRVTNDTLRSIRMYFWKGNRIIY
                     LQDVGGDENFQLFSVTVAGTGLKALTPFPGYRTGVLDALRFIPGKEKEMLIVINKRDK
                     QYFDPYLINIETGKLTLMYENKQNYDNWYTDNNGVIRMATKTDGVNITYMYRNNEMDD
                     FAPLLTTSFRETFEPQAFDASNKNIYVMSNIGRDKIALVEFDPVAKKEVKQLYAHPDY
                     DLSGAYYDKKKKMLANVWWTGEKAEDFYFDKQRDQIIKRLQKQLPGYKIYFGSNDDEM
                     KQGIMVVYSDRLPRRYYVCNFATGEAKEIANPYPWLNEKEMANMKPISYTSRDGLTIH
                     GYLTLPKGVEAKNLPVVVNPHGGPWYRDGWGFNPEIQFLANRGYAVLQMNFRGSTGYG
                     KKFWESSFKQWGKKMQDDVTDGVEYLKKQGIADPKRIAIYGGSYGGYATLAGVAFTPD
                     LYTCAVDYVGVANLFTFMKTIPPYWKPYLDQFHEMVGDPVKDSLLFVEASPVLHADKI
                     KVPMLVAQGANDPRVNKAESDQMVAALKSRGIEVEYLVKDNEGHGFLNQNNRYDFYGA
                     MEKFLNKHMK"
     gene            2740..3234
                     /locus_tag="VI413_04995"
     CDS             2740..3234
                     /locus_tag="VI413_04995"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY6914013.1"
                     /translation="MKKLIYPLIFAALLISGCKPKTPDMESAMKAINELLDKNEAAIK
                     NRNLDSMAALLDDRGLYCGTDPSELWTKKQICDEYARMFADSTVNFNKSAVGKREIRI
                     QEDGNSAIVIEQWIIEQLFPKMPVRMITQLIKEDNAWKINFTSISLIPLNNDVVKLNK
                     AMEK"
     gene            3495..3749
                     /locus_tag="VI413_05000"
     CDS             3495..3749
                     /locus_tag="VI413_05000"
                     /inference="COORDINATES: protein motif:HMM:NF024086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEY6914014.1"
                     /translation="MSSKQMCQSCGMPLSKDPNGGGTNADGSMSEKYCSYCYQNGEFT
                     FNGTVSEFQEYCRMKMKEGGHSGFMAWLFSRGLKRLERWK"
BASE COUNT         1239 a          630 c          840 g         1078 t
ORIGIN      
        1 tatcaggaat ataacctgaa aaaaataagt attggagtca tttccgttgt tgttttgttc
       61 tgtagctacc tagtttacat tagcattcct gtcgataccg tgaaaaattt tttgaccgag
      121 aaggatatga aaaactatga aattgagagg tatggcgaga aaatgaaaga atttgcttct
      181 actgaatcga tggctctgga agtattcaat atgtcggatc agactcccaa agaagaactt
      241 ttgaaggaaa taaagaaccg gggcatatac tacaggaaag ataatattct actcattaaa
      301 caagttgaaa catttaattt acctcctttt ttacacaatc gaaataagtt gttgttgcag
      361 tattgtaacc tgaggataaa aagttatgaa ctcatttaca aaaaagtaga aagcgaaact
      421 gacgaattgc tcccacaaat tcaggagtgc aataaagata tagaaaaaat aattgcccaa
      481 ctttcggata aaaaagaaga gtaatgaata gcttttttgt tttacacacc aaccgtccgt
      541 gattgaaaga tccgggcggt tgttttgttt tcaaccggct acatttgtat attccggatt
      601 agtttacata gataaaaaat gttatatatg gctgattact aaagtactaa aaaacaaatc
      661 gaaataacag tttgttttaa tcaggatgat tccgtcaatt tgatttccct ttcgttttta
      721 ggacttacag tacattataa attattattt tatatactat ctgttttgca gtctcattgt
      781 tttgtttaac taatcaaaaa caagtaatta tgaaaaaaaa tcaatttttg ctggttttgc
      841 tggctgtaat ctctgttatt ggagtcagca catcgtttac gggcccggag gtgactaaag
      901 cgcctcttat tgacatgaaa atgtttttca agaatgggga gaaagataac ttccagattt
      961 ctcccgatgg caagtactac tcttatattg ccggatataa agacatgatg aatgtatatg
     1021 tccgtaaaat tggcgataaa agtgctgtgc gtgtaaccaa tgataccctg aggagtatcc
     1081 gtatgtattt ctggaaaggc aaccggatta tttatttgca ggatgtgggt ggcgatgaaa
     1141 acttccagtt gttttcggta acagttgcag gtacaggttt aaaggcgctt actccgtttc
     1201 cgggatatcg aaccggggta ttggatgctt tgcgttttat ccccgggaag gaaaaagaaa
     1261 tgctgattgt aattaataag cgcgacaaac agtattttga tccgtacctg atcaatattg
     1321 aaacagggaa acttaccctg atgtatgaaa acaagcaaaa ttacgataac tggtatacgg
     1381 ataataatgg cgtgatacga atggctacca aaaccgatgg agtaaacatt acttacatgt
     1441 accgcaataa tgaaatggat gactttgctc ctttgcttac cacttcgttc agggaaactt
     1501 ttgagccgca ggcattcgat gcctctaata agaatattta cgtgatgtcg aatatcggaa
     1561 gggataaaat tgcacttgtg gaatttgatc ctgtggctaa gaaggaagtg aaacaactgt
     1621 atgcgcatcc cgattatgac ttgtcgggtg cctattacga taaaaagaaa aagatgcttg
     1681 ccaatgtgtg gtggacaggt gaaaaggccg aagatttcta ttttgataaa caacgcgacc
     1741 agattatcaa acggctgcag aaacaattac cgggatataa aatatatttt ggaagcaatg
     1801 atgatgaaat gaagcaggga attatggtcg tttacagcga caggcttcca cgcagatatt
     1861 atgtatgcaa ttttgcaacc ggagaagcaa aagaaatcgc taatccttat ccgtggctga
     1921 atgaaaagga aatggccaat atgaaaccaa tttcttatac ttcgagggat ggactgacca
     1981 ttcatggtta cctgacttta cccaaaggag ttgaagccaa aaacctgcct gtagtggtta
     2041 atccgcacgg aggcccatgg tacagggatg gctggggatt taatccggag attcagtttt
     2101 tggccaacag aggctatgcc gtgttgcaaa tgaatttcag gggaagtacc ggctatggca
     2161 aaaaattctg ggaatcctct tttaaacaat ggggcaagaa aatgcaggat gatgtaacgg
     2221 atggtgtaga atacctcaag aaacaaggta ttgccgaccc caagcggatt gcgatatacg
     2281 gaggtagtta tggcggctat gccactctgg ccggtgttgc ctttactccc gatttatata
     2341 cctgtgcggt agattatgta ggcgtggcta acctgtttac ctttatgaaa acaattccac
     2401 cttactggaa accatatctg gatcaatttc acgaaatggt tggtgacccg gtaaaggaca
     2461 gcctgttgtt tgtagaggca tctccggtac ttcatgccga taaaattaaa gtgcctatgc
     2521 ttgttgcaca gggagccaat gacccccggg taaataaagc agaaagcgac caaatggttg
     2581 ctgcactgaa aagtcggggt attgaagtgg aatatctggt gaaagataat gaaggtcatg
     2641 gattcctgaa ccagaataac cgctacgatt tctacggagc catggaaaaa ttcctgaata
     2701 aacatatgaa ataaattaaa cctgtaaagc tttaagagaa tgaaaaaatt aatctatccg
     2761 ctgatttttg cagctcttct gataagtggt tgcaagccga aaacccctga tatggaaagt
     2821 gcaatgaaag cgattaatga attgcttgat aaaaacgaag ccgctataaa aaacagaaat
     2881 cttgatagca tggctgctct gctggacgat cgtggactgt attgtggaac agatccatct
     2941 gaattatgga cgaaaaaaca aatatgcgac gaatatgcca ggatgtttgc agattccaca
     3001 gtgaacttta ataaatcggc tgtcggtaag agggaaatcc ggattcagga agacggaaac
     3061 tctgcaatag tgatagaaca atggataatt gaacagcttt tccccaaaat gcccgttcga
     3121 atgatcacac agcttattaa ggaagataat gcgtggaaaa ttaattttac cagtataagc
     3181 cttattcctc tcaataatga cgtggtaaag ctgaataagg caatggaaaa ataaaagaag
     3241 cctattgcgg tatttaatct cgttttcacg gattttatga tcaaccgaaa ataaatgttg
     3301 taccaacaac cgtctgtgag tgaaaaaaat cgggcggttg ttttgttttt ctcatgtata
     3361 aaagctttga tagttcactt aaaaatacac ggctgaaaag taggtttttt taagtttgtt
     3421 ttgtatgttt gcagatgtaa aggtagatcc ttgacctgta ttgaaaataa ttattaaata
     3481 aaaatttata agctatgagt tcaaaacaaa tgtgccagag ttgtggcatg ccgctaagca
     3541 aagatcctaa tggaggcgga acaaatgctg acggcagtat gagcgaaaag tattgcagtt
     3601 attgttatca aaatggtgag tttaccttta acggtaccgt cagtgagttt caggaatatt
     3661 gcaggatgaa aatgaaagaa ggtggccatt cgggctttat ggcctggttg ttttcacgtg
     3721 gcctgaagcg tctggaacgc tggaaataaa ttactgcggg taagctattc atacgctggt
     3781 aaaatcc
//
LOCUS       DATDNM010000298         2168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_998428, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000298 DATDNM010000000
VERSION     DATDNM010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_998428"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..498
                     /locus_tag="VI413_05005"
     CDS             <1..498
                     /locus_tag="VI413_05005"
                     /inference="COORDINATES: protein motif:HMM:NF014618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease family protein"
                     /protein_id="HEY6914015.1"
                     /translation="GNRRFSVMIGEPEAQSIALKINNKKSPRPLTHDLIKNILNTFKA
                     ELVKVVIYDMVNDVFFSELHIQKNDEVLIIDARTSDAVALAVRSDCPIYIKSEILEIV
                     GTEIEPAEVEEKEPNPVNGEDLTADDLDLLSLEALEELLEMALHEEKYELAVNIRDAI
                     KRKKQ"
     gene            542..1792
                     /locus_tag="VI413_05010"
     CDS             542..1792
                     /locus_tag="VI413_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010992248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015506 - nucleoside:proton symporter
                     activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015858 - nucleoside transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease"
                     /protein_id="HEY6914016.1"
                     /translation="MGLKFRLTIMNFLQFFIWGSWLITIGGYWFQNKGWSGTEFGAIF
                     STMGIASLFMPALAGVIADRWVNAEKLLGIFHLLGAVCLFLVPQMENPTQMFSLMLVN
                     MMFYMPTISLAITVSYSAMKKANMDVVKDYPPIRVFGTIGFIAAMWTVSLLKIETSSM
                     QFYVASIAAFLLGIYAFILPKCDVNKQVEKKTLVDSLGLKAFTLFKDRKMALFFIFSM
                     LLGAALQLTNAYGDTFLHDFAKIDAYKGLTAIKYPAIIMSISQMSETLFILTIPFFLR
                     RFGIKNVMLFSMLAWVLRFGLFGLGNPADGLWMIILSCIIYGMAFDFFNISGSLYVET
                     QTDSRIRASAQGVFMMMTNGFGAVLGSITSGYIIDSYFTVNGNLQWMGIWFTFATYAL
                     IVAILFAVFFKHKHEPVILHAVNH"
     gene            complement(1891..>2168)
                     /locus_tag="VI413_05015"
     CDS             complement(1891..>2168)
                     /locus_tag="VI413_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DnaB-like helicase C-terminal domain-containing
                     protein"
                     /protein_id="HEY6914017.1"
                     /translation="GNSLLGIAEIIIAKHRNGAVGDVQLKFKGQYAKFMNRDDKDKDD
                     NPFDTGYQVISSKMNDAGAASANFYGDGALMTPSNPLGSGRNDEVPF"
BASE COUNT          597 a          388 c          447 g          736 t
ORIGIN      
        1 ggtaaccgca ggttttcagt gatgattggc gagcccgaag cgcaatctat tgccctgaaa
       61 ataaataata aaaagtctcc aagaccattg acccatgatt tgattaagaa catcctgaat
      121 acttttaaag ctgaactggt gaaagtggtg atttacgata tggtgaatga tgtgtttttc
      181 tctgagttac acatccaaaa aaatgacgaa gttctgatta ttgatgcacg tacctcagat
      241 gcagtggctt tggctgttcg ttcagattgt ccgatttata ttaaatcaga aattctggaa
      301 attgtaggga ctgaaattga accagcagaa gttgaagaaa aagaacctaa ccctgtaaat
      361 ggggaagatc ttactgccga tgacttagat ttactttcgc tcgaagcatt ggaagaatta
      421 cttgaaatgg cgctacatga ggaaaaatat gagttagccg tgaatatacg cgatgctata
      481 aaaagaaaga agcaataaac tacaacttat attctacatc taattaaata attatattgt
      541 catgggatta aagtttcgtc ttacaataat gaattttctt cagtttttca tctggggttc
      601 ctggttaatt acaattggtg ggtattggtt tcagaacaaa ggctggtccg gaactgagtt
      661 tggggctatt ttttctacta tgggtattgc ttcgttgttt atgcctgcat tggctggtgt
      721 cattgccgac cgttgggtaa atgctgaaaa actattgggg atatttcatt tgctgggtgc
      781 agtatgcctg tttctagttc cgcaaatgga aaacccaacg cagatgttct cgttaatgct
      841 tgtaaacatg atgttttata tgcccactat ttcactggca ataaccgttt cctattctgc
      901 tatgaaaaaa gccaatatgg atgttgttaa agattatccg cctatccggg tttttggaac
      961 aattggtttt attgcagcta tgtggactgt cagcttattg aaaatagaga cttcgtccat
     1021 gcaattttat gtagcttcta ttgctgcgtt tctgcttggc atttatgctt ttatcttgcc
     1081 aaaatgcgat gtaaataaac aagttgagaa aaaaacgctg gtagattcac tcggattaaa
     1141 agcctttacc ttgtttaaag accggaaaat ggctttgttt ttcattttct ctatgctgct
     1201 gggagctgct ttgcagttga caaatgctta tggcgatacc tttctgcacg attttgcaaa
     1261 aatagatgct tataaaggtc tgacagccat aaaatatccg gctatcatta tgtctatttc
     1321 ccaaatgtcc gaaacgctgt ttatccttac tattcctttc tttttgcgcc ggtttgggat
     1381 taagaacgtg atgttattta gtatgctggc atgggtgctg cgttttggtt tgtttggact
     1441 tggaaatcct gccgatggac tttggatgat tattctctcg tgtattattt acggcatggc
     1501 attcgatttc ttcaatattt cgggttcgtt gtatgttgaa acgcagactg attcaaggat
     1561 aagagccagc gcacaaggtg tttttatgat gatgactaat ggttttggag ctgttttggg
     1621 aagtattacc agcggttaca ttattgatag ctattttaca gtaaatggaa atttgcaatg
     1681 gatgggaatc tggtttacgt ttgctactta tgcattaatt gtagctattt tgtttgccgt
     1741 atttttcaag cataaacacg agccggttat acttcatgct gtaaatcatt gattcaagat
     1801 atataaaaac gaacaaagca ggaaatgact tgtcatttcc tgctttgttt tgttacttcc
     1861 tactacttcc ttcttcctac caactgccgg ttaaaaaggc acctcatcat ttcttccact
     1921 tcctaacgga tttgaaggtg tcatcaatgc gccatctccg tagaagttag cgcttgcagc
     1981 gcctgcatca ttcattttag aggagataac ctgataacca gtatcaaaag gattatcatc
     2041 tttgtctttg tcgtccctgt tcataaactt ggcatactgg cctttaaact tcaattgtac
     2101 atcaccaacg gcaccattac ggtgtttagc gataataatc tcggcaatcc ccagtaatga
     2161 atttccct
//
LOCUS       DATDNM010000299         6262 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2066992, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000299 DATDNM010000000
VERSION     DATDNM010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6262
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2066992"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..763)
                     /locus_tag="VI413_05020"
     CDS             complement(<1..763)
                     /locus_tag="VI413_05020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008861773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY6914018.1"
                     /translation="MFCVDFTNAQKPVYLDVNQPIEKRIEHALSLMTLEEKVAMCHAQ
                     SKFSSKGVQRLGIPEIWMTDGPHGIREEVFWDEWDGAKWTNDSCTAFPALTCLAASFN
                     PETAFLYGKTIGEEARYRNKGVLLGPGVNIYRTPFNGRNFEYMGEDPYLSSRMVVPYV
                     QGVQQNSVAACVKHFALNNQEVNRMSINVEVSDRALYEIYLPAFKAAVLEGKAWSIMG
                     AYNQFRGQHCCHNDLLLNKILKNEWQFDGAVISDWG"
     gene            complement(935..2575)
                     /locus_tag="VI413_05025"
     CDS             complement(935..2575)
                     /locus_tag="VI413_05025"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HEY6914019.1"
                     /translation="MKKHFLFLFLSCFAFISAKAVATNKLVNGNMESQGAWQVSYLNT
                     PVAQNPVAAWGYTANTPTAGTGGALHVVGTTTGGNSQFCIYQQVTLTAGFVYNFDAAF
                     KNIKLERSWCEVFIGNIPVDGSDYAEGTGAGQGTKIANYGSWDNPAAIADGTFKLNAA
                     ACKSFIPTTTGTYYFVLKMGATTWDGTSQTCEIVIDELLLTETRTKPQVAFTADNVNG
                     FPVVTTTFTNTTLFASSYEWNFGDGSVLSTAINPVHAYDTPGTYSVTLKATNEVGETT
                     LTKTDFIIVNAKPALPTGELLYGGNMENANFWTIDYLNTDAAKYPVASWNNTTNTLAS
                     GSGGNLYVTSAGGSAGIQYAIYQKVALTQGHVYEFNGAFRDLTADLHNFWTEVFIGAK
                     PAGNGADYGSGQTMIAKFDYWGSYTGDRVNGTFKANSKLSEYKTFTAPTTGDYYFVAK
                     MGTWDGAGFQIAWDELSLKDLSLTTATKATLSDDYKISTFNKTIVVDNVKTSIALFDI
                     SGRCIHAAKVVGKYSSEALQSGLYLVVVDGYSKKISVR"
     gene            complement(2716..5358)
                     /locus_tag="VI413_05030"
     CDS             complement(2716..5358)
                     /locus_tag="VI413_05030"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HEY6914020.1"
                     /translation="MKKQLLLLMVCCMSFITAFAAGGNKLANGNMESQGAWQVSYLNT
                     AADKLPVVTWGYTAVVPTAGVGGGLHVVATTTASNSQYCIYQAVTLSADSIYNFDAAF
                     KNIKLERSWCEVFIGQMPVEGQDYGDALGTKIANYGAWDNPATIADGTFKLNAPACKY
                     FMPPTTGIYYFVMKMGSTTWDAEVPTCDIVVDELKLTSDRLAPMAAMKADVRSGFAPL
                     SVKFSDDSKMATSWAWDFGDGSTSTEKNPTHTFATVGKYTVKLTATNEVGSNEKVETD
                     YINVTPLAILTGGGLLKDGNMEAKGSWTEDFLNSGAGNNPVATWNATENKPNAGQGGY
                     LMIEGPAAGAGVQYAIYQKVHLSRDSVYMFDGAFRDLSANLKNFWTEVYIGAQPAGNG
                     ADYGATEGKLIAKFDAWNAGSAVAGLNGTFKIHANLNNSYTPETTGDYYFVFKMGTWD
                     GPGFKIAVDELSLTPVRTKPAVSFTATNAVGFPALKTVFANATKFASSYKWDFGDGSA
                     ISTLENPEHTYTVVGTYTVKLTATNEKGDSVLIKTDFVKVNSKPTLPAGEMLYGGNME
                     NGNFWSTNKCNPADVSTFSWNYTGSTPTGGAGGNLRIQTTGTGFNTAIYQELKLKAGY
                     TYLFDGFFKDIKGVSDFWCEGFIGTTIPTDGVDYTPTQGTKIFGMDTWNGLQSLTDVQ
                     ISKKATVAPFKPTVDGTYYFVLKMGSNASLAREILIDEVTLKETLPVKADFYAETVSG
                     STPLTVQFYDLSTNATAWSWDFGDGATSIVQDPVHIYTTGGTFTVKLTASNSGSNDVL
                     TSTNLITVLPNAVNSIDFNTYKIRTSNHVINVEGVQTKVELFDILGRNIQSVNVNGKF
                     ISQTLQAGLYVIRVDGSTAKIAVK"
     gene            complement(5395..5760)
                     /locus_tag="VI413_05035"
     CDS             complement(5395..5760)
                     /locus_tag="VI413_05035"
                     /inference="COORDINATES: protein motif:HMM:NF027705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4998 domain-containing protein"
                     /protein_id="HEY6914021.1"
                     /translation="MKALKILSFLVLGLLLCNCGGMDENYQDYLANVKVYSPRVSNLT
                     VVSGLKEVTLSWKNPQGKIAVKNVVKLQDSIIVLDSLVETYKLVNLEIKGYQVSVYTL
                     DKFGNYSVPVSTSIFPNGE"
     gene            complement(5776..>6262)
                     /locus_tag="VI413_05040"
     CDS             complement(5776..>6262)
                     /locus_tag="VI413_05040"
                     /inference="COORDINATES: protein motif:HMM:NF027707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5000 domain-containing lipoprotein"
                     /protein_id="HEY6914022.1"
                     /translation="WDDVVDTKESGADNSYFIINRDDNGGMLKWPLDIVVDLNKTVVV
                     NRFVVWQRAFEYINADQNGVSTNYYYYKEENMRSFAISVSTDKLVWIPLGTFDIGDPR
                     DASGNISPLKYKEAVDGHEFNLESVSQPFRYLKFSVLSNYGSETNVYGSEITLYGLDN
                     Q"
BASE COUNT         1852 a         1395 c         1173 g         1842 t
ORIGIN      
        1 ctccccaatc gctgataaca gctccatcga attgccattc atttttcaga attttattca
       61 acagcaaatc gttatgacaa caatgctgcc ctctgaactg gttgtaggca cccataattg
      121 accaggcttt tccttcgagg acagcagctt taaaagcagg gagataaatt tcgtacaatg
      181 ccctgtcgct aacttctaca tttattgaca tgcggtttac ttcctgattg ttgagtgcaa
      241 aatgcttcac acaagccgca acactattct gctgaacacc ctgaacataa ggaaccacca
      301 tgcgtgaaga cagataagga tcttcgccca tgtattcaaa attacgtcca ttaaacgggg
      361 tgcgataaat atttacacca ggcccaagta gcacgccttt gttacggtaa cgagcttcct
      421 cgcctattgt ttttccgtaa agaaatgcgg tttcaggatt aaatgacgca gccaaacagg
      481 tcaatgccgg aaatgcagta caagagtcgt tagtccattt tgccccatcc cattcgtccc
      541 aaaacacttc ctcgcgtata ccgtgagggc cgtcggtcat ccatatttcg ggaatgccca
      601 gcctttgtac acctttagaa ctgaacttgg actgtgcatg acacatggcc actttttctt
      661 ccagggtcat taacgataac gcatgctcta tacgtttttc aatgggttga ttaacatcga
      721 gataaacagg tttttgtgca tttgtgaaat caacacaaaa cattaagcac aaaacggcga
      781 cacttacaat tttaagtttc atgtgtaaat aatttatttt taaattgttg catttcagtc
      841 attccaatat cagaagaacc agatttatgc atttaaggag tgaataaaaa accggggcgg
      901 acgcatagaa taaatccgtc ccggattata aaaattacct cactgaaatt ttcttactat
      961 aaccatcaac tactactaaa tagaggcctg attgaagagc ttcagagcta tatttaccaa
     1021 ctactttggc cgcatggatg caacgacccg agatatcgaa taaagcgata ctggttttta
     1081 cattatcaac cacaattgtt ttattgaaag ttgaaatttt ataatcatca gaaagagtag
     1141 cttttgttgc tgtagttaag gataaatctt tcaatgaaag ttcgtcccat gcaatctgaa
     1201 aaccggcccc atcccaggtg cccattttgg ctacaaaata gtaatcgccg gtagtaggtg
     1261 cagtgaaagt cttgtattcg ctcagttttg agttagcttt aaaagtaccg tttactctgt
     1321 cgccggtgta gcttccccag tagtcaaatt ttgcaatcat agtttgtccg ctaccatagt
     1381 cagcaccatt gcctgccggt tttgcgccaa taaaaacttc cgtccagaaa ttatgtaagt
     1441 ctgcagtcaa atcgcggaaa gctccgttga attcatacac atgcccctgt gtgagtgcca
     1501 ctttttgata aatggcgtat tgaatgccag cacttccacc tgctgatgta acatacaagt
     1561 ttcctccgct tccagaggct aaggtgttag ttgtgttatt ccaacttgct acaggatatt
     1621 tagccgcatc ggtgttcaga tagtcaatgg tccagaaatt tgcattttcc atattgccac
     1681 catagagcaa ttcaccggtg ggcaaagcag gttttgcgtt tacaatgata aagtctgttt
     1741 ttgtcagtgt tgtttcaccc acttcgtttg tagccttcag agtaacagaa taagtacccg
     1801 gagtgtcgta agcgtgaacc ggatttattg ctgtgctcaa tacagaacca tcaccaaaat
     1861 tccactcgta cgagctggca aaaagcgttg tatttgtaaa agtagtagtt acaaccggga
     1921 aaccgttcac attatcggcc gtaaatgcaa cctgcggttt ggttcttgtt tcggttaaca
     1981 ataattcatc tataacaatt tcgcaggttt gtgaagttcc atcccaggta gtagccccca
     2041 ttttcaatac aaaataatac gtgcctgttg tagttggaat aaacgattta caagcagcag
     2101 catttagttt aaatgtgcca tcggcaatgg cagcgggatt atcccacgag ccataattgg
     2161 ctatttttgt tccttgtccg gcacctgttc cttcggcgta atcgcttcca tcaacaggta
     2221 tatttccaat aaaaacctca caccacgaac gttcaagttt gatattttta aatgctgcat
     2281 cgaaattata cacaaaacct gcagtaagag taacctgctg ataaatacaa aactgtgagt
     2341 ttccaccagt tgttgtccca acaacatgca atgccccgcc ggttccggct gtaggtgtat
     2401 tggcagtata tccccaggca gccaccggat tctgagctac cggagtattc aaataagaaa
     2461 cctgccaggc gccctgactt tccatgttac cgttaaccaa tttattggta gcaactgctt
     2521 tggctgaaat aaaagcaaag caactcagaa aaagaaagag aaaatgtttt ttcataaagc
     2581 aataatttaa agtaaattaa tatgaagtga taaggatgta ctatcccttt ttagattgcc
     2641 gatgcaagcc aaaaaacgaa atttctaaaa ggtagtgcaa tggaattatt gcactacctt
     2701 aggggtaaac cgaatttatt ttacagcaat ttttgcagta ctgccatcta cacgaattac
     2761 gtataatcca gcctgaagtg tttgggaaat gaattttccg ttcacgttta cagattgaat
     2821 gttacgacct aaaatatcga ataattcgac tttggtttgc acgccctcaa cattgatgac
     2881 atgattggaa gttctaattt tataggtatt gaaatcaatt gaatttacag catttggaag
     2941 aacagtaatc aaattggtag aagtcaacac atcgttcgaa ccggaattac ttgcggtaag
     3001 ttttacagta aatgtgccac ctgtagtgta tatatgaacc ggatcctgaa caatacttgt
     3061 agcaccatca ccgaagtccc aactccaggc agtagcatta gtcgataaat cgtagaactg
     3121 aacagtaagc ggtgtagaac ccgaaacagt ttcagcatag aagtcagctt ttaccggcaa
     3181 tgtttctttc agtgtaactt catcaatcag aatttctctg gctaaagaag cattggaacc
     3241 cattttaaga acgaaataat atgttccatc cactgtaggt ttaaacggcg caacagttgc
     3301 ttttttgctg atctgtacat cagtcagtga ttgaagtccg ttccaggtat ccataccaaa
     3361 aatttttgtg ccctgagttg gcgtatagtc aacaccatcg gttgggatag tggttccaat
     3421 aaacccttcg caccaaaaat cagatacgcc ctttatatct ttgaaaaaac catcgaatag
     3481 ataggtgtaa cctgctttca acttaagttc ctgataaatg gctgtattaa aacctgttcc
     3541 ggtagtttga attcgaagat tacctccagc tccgccagtt ggagtgctac cggtatagtt
     3601 ccatgaaaaa gttgatacat cggccggatt acatttgttt gtagaccaga agtttccatt
     3661 ttccatatta ccaccataca acatttcgcc ggcaggaagt gtcggttttg aatttacctt
     3721 cacaaaatcg gttttaatga gtaccgagtc acccttttcg ttggtagccg taagttttac
     3781 ggtataagtt ccaacaactg tgtaggtatg ttcagggttt tcgagcgtgc taatagccga
     3841 tccatcgcca aaatcccatt tatacgaact ggcaaatttt gtagcgtttg caaatacggt
     3901 tttcagtgca ggaaaaccta cggcatttgt agcagtaaag ctaacagcag gctttgtacg
     3961 aaccggagtc aacgaaagtt catctacagc aattttaaac ccaggtccat cccatgtgcc
     4021 cattttaaac acaaagtaat aatcgcccgt agtttcggga gtatatgaat tgtttaagtt
     4081 ggcgtgaatt ttaaaagtac cattcagacc agccacagcg ctacctgcat tccatgcatc
     4141 aaacttagca atcagtttac cttcggtagc accatagtca gcaccattac cggcaggttg
     4201 cgctccgata taaacttccg tccagaaatt tttcagatta gcactcaaat cgcggaaagc
     4261 tccatcgaac atataaactg agtcgcgact taaatgtact ttctgataaa tagcatattg
     4321 cacaccggca ccagcagccg gaccttcgat catcaaatat ccgccctgtc cggcattagg
     4381 cttattttca gtagcattcc atgttgcaac agggttgttg ccggcacctg aattcagaaa
     4441 atcttctgtc cagctacctt ttgcttccat atttccgtct ttcaacaatc caccaccggt
     4501 taatatcgcc aatggcgtta cattaatata atcggtttca actttctcgt tagaaccaac
     4561 ttcgttcgtt gcagttagtt tcacagtata tttacctaca gttgcaaagg tatgagttgg
     4621 atttttctcg gtacttgtgc taccgtcgcc aaaatcccat gcccatgaag tggccatttt
     4681 agaatcgtcg ctgaatttta cacttaatgg tgcaaagccc gagcgcacat cagctttcat
     4741 ggctgccata ggggcaagtc tgtcgctggt aagttttagt tcatcaacca caatgtcgca
     4801 ggtaggaact tctgcgtccc aggtagtgga gcccattttc attacaaaat aatagatacc
     4861 tgtagttgga ggcataaaat acttgcaagc cggggcattg agtttgaaag ttccatcggc
     4921 tatggtggcc ggattatccc atgcaccata gttagctatt ttggtcccca acgcatcgcc
     4981 ataatcctga ccttcaaccg gcatttgacc aataaatact tcgcaccatg aacgttccaa
     5041 tttaatattt ttgaacgcag catcaaaatt ataaatagaa tcggccgaca acgtaactgc
     5101 ctgataaata caatactgag aattagaagc tgttgtagtt gcaacaacgt gcagaccacc
     5161 acccacacct gctgtaggaa ccacagctgt gtatccccat gttaccacag gcaatttatc
     5221 ggcagccgta ttcagataac ttacctgcca ggcaccctga ctttccatgt taccgttggc
     5281 aagtttatta ccaccggcgg caaatgctgt aatgaaactc atacagcata ccattaataa
     5341 aagaagttgt tttttcataa gactatattt aaaggataat tatttataag aattttattc
     5401 tccgttaggg aaaatagaag ttgacaccgg aacggaataa ttaccaaatt tatcaagcgt
     5461 atagactgaa acctgataac ctttaatttc gagattaacc aatttgtatg tttccaccaa
     5521 actatctaaa acaatgatgg aatcctgaag cttcaccaca tttttcaccg caattttacc
     5581 ctgtgggttt ttccacgata aggttacttc cttcagacct gacacaactg ttaagttgga
     5641 aacccgtgga gaataaactt tcacattggc gagataatcc tggtagtttt catccatgcc
     5701 accacagtta cacagcaaca accccagaac taaaaaactt aatattttga gtgctttcat
     5761 ttttaaaact aatttttatt gattatctaa accgtaaagt gttatttcgg atccatatac
     5821 attcgtttcg ctaccgtagt tcgacaaaac gctgaatttc aaataccgga atggttgcga
     5881 tactgattca agattgaact catgtccatc cacagcttct ttgtatttta aaggtgagat
     5941 atttcctgag gcatcgcgcg gatcgccaat atcaaatgta cccagtggta tccacaccag
     6001 tttatcagta cttaccgaaa ttgcaaacga cctcatattt tcttctttgt aataataata
     6061 gttggtgctc actccgtttt gatccgcatt gatgtattcg aaagcacgtt gccataccac
     6121 aaaacggttt acaactacag ttttattcaa atccaccacg atgtcgagtg gccacttgag
     6181 cataccacca ttatcgtcac gattgataat aaaatagcta ttatcagctc ccgactcttt
     6241 agtatctacc acatcatccc ag
//
LOCUS       DATDNM010000300         3639 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_678214, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000300 DATDNM010000000
VERSION     DATDNM010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3639
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_678214"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(199..2658)
                     /locus_tag="VI413_05045"
     CDS             complement(199..2658)
                     /locus_tag="VI413_05045"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEY6914023.1"
                     /translation="MKKTYFLLCLLVALGIIVHVSAQTNPGTTNLKHQWTFDGGSATD
                     AIGGVVGTIHGAATLANNAFISTNGYMDFPAASIGVNSYSELTVEVWCTSAVGKNTGW
                     TMLSYFGETVAGAGKNYTFLSIARAVDGSMVSLETSTWNGATGPEYDDGKLHHFVYTV
                     NATTIAYYIDGTFISSSPLAAGNTLAGVSTALAYLGRGGWTGDPNWIGSFHKFSIYDK
                     ALTSDEILYLYQDGAEKQQVISTTATAIAFDNNYPAETFNVSGSNLTNPIAIAAPAGI
                     KLMDMFGSVISSLPANTTDKEVVAVWDLTTPVNDSIKLTSGNVVVKIPIKTGSDLACF
                     NPLYTTTNLVEDPGLNNMSNFSGWGSRTVSNIINDPSNVYCGASSIKVGDGIAANSGS
                     LNVDLTGKIAPNTTYRVRAMIKTIDGTFQLGVWGWSGSDADINNVINTNGEWKAVDFT
                     FTTGATLGVNQGMFINNWTCTGTIAYADNWEMYIAQEPVISASAKGLAYDPEYTSNIF
                     NVTAANLSEAIAITAPAGITVNPVSLAADAAGAPVTVTWDGTTAVNGFVTLASGATQL
                     KIPVKTVATSNTTCFVPLYTTKTNLIPSPYFNNPDAFAGWGGKGFISIIDNPDSVYCG
                     SHSGIISGDGSMDVQLAGVLKKNTPYISRVMLMTIGGTYQLGISGFDARNNAADINTV
                     VDTQGAWQLVTLEFTTGDSLRAGNVPLFVNKWNLTGRRALIDNWELYEKDPNAVATVN
                     NLFENVYVRDTKIIVDFTVEQPSEVQLSVYSIQGALLSTEKFTPLAGRNSKQLNAHLP
                     SGMYLVNISRNGQSGFRKVII"
     gene            complement(2987..>3639)
                     /locus_tag="VI413_05050"
     CDS             complement(2987..>3639)
                     /locus_tag="VI413_05050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914024.1"
                     /translation="VYAMRKQYQQSMDDLNLLIAKDTNDQVSLYNRAGLKEKMKDFAG
                     SVSDYQHLLKSIRIKPSPIIVDTAEVLNSIGWTYYLSKQYKLCVEYADKSLLVRPDDS
                     HTLDTKGSGYFGLGEYEKCIYDMTLAIGLDPDLANSWYLRGLSYQKLDLPERACADLS
                     KAAGLGLVEADKAKKELCPSSIAEVESQRQFPVGKPTNSKNSVGIDYNGIIYFRFK"
BASE COUNT         1073 a          814 c          683 g         1069 t
ORIGIN      
        1 attgtccact acaaagcttc ggatttttcc caaaccagtg ttatttattt ttcctaatca
       61 accaacaaat atagctattt cagcttaaca atattctatt tttaatttgt tttttgaaaa
      121 aacaagagca ggcttttgac ctgctcctga cttctaactg aaaaactgcc aactatcttt
      181 actgatgaat gggcaaattt aaataatcac tttcctgaaa ccggattgac catttcggct
      241 tatatttacc agatacatgc ctgatggcag atgcgcattt agctgtttgg aatttcgccc
      301 tgcaagcgga gtgaatttct cggttgaaag caatgcacct tgaatagaat acactgaaag
      361 ttgaacttcc gaaggctgtt ccactgtgaa atccactatt atttttgtat cccggacata
      421 tacattttca aacaggttat ttactgtggc aacagcattc ggatcttttt cataaagttc
      481 ccagttatca atcaatgcac gtcttccggt caaattccat ttgtttacaa acaaggggac
      541 gtttccggcc ctcaaactgt ctccggttgt aaattccagt gttaccagtt gccatgctcc
      601 ctgcgtgtcc actacagtat ttatatcagc agcattgttc ctggcatcaa aaccactgat
      661 tcctaactgg tacgttccac caattgtcat aagcattaca cgtgatatat agggtgtatt
      721 tttctttaaa acacctgcca actgaacgtc catggaaccg tcacccgaga ttataccgga
      781 gtggcttccg cagtaaaccg aatccggatt atctataatt gaaataaatc cttttccacc
      841 ccaaccggca aatgcatcgg gattgttgaa ataggggctc ggaattaagt ttgttttagt
      901 tgtataaaga gggacaaagc aggtcgtgtt tgatgtggca acagttttta ccggaatttt
      961 tagctgggta gcaccacttg ccagggtgac aaatccattc acggcagttg ttccgtccca
     1021 ggttacagta accggagctc cggctgcatc ggcagctaaa gaaaccggat taacggttat
     1081 gcctgcgggg gcagtaattg caattgcttc agacaagtta gctgctgtga cattaaatat
     1141 atttgaagta tattccgggt cataggccag cccttttgcc gaagcactga taacaggctc
     1201 ctgcgcaata tacatttccc aattatcagc atatgctatc gttcctgtgc aagtccagtt
     1261 attaataaac attccctggt tcacacccaa tgtagcccct gtagtaaagg taaagtcaac
     1321 tgctttccat tcgccattgg tatttatgac attattaata tctgcatcac tcccgctcca
     1381 accccaaact ccaagttgga atgtgccgtc aatggtttta atcatagctc taacccggta
     1441 agttgtgttt ggcgctattt ttcctgtcag gtcaacattc aacgaaccgc tgtttgccgc
     1501 aatgccatct ccgaccttaa tgcttgatgc accacaataa acattcgaag gatcgttgat
     1561 gatattggat acagtccggc taccccaacc tgaaaaattc gacatattgt ttaaacccgg
     1621 atcctcaaca aggttagttg tagtgtataa cggattaaaa caagctaaat cagaacccgt
     1681 ttttatcggg attttcacaa ctacatttcc acttgtcagt ttaatgctat catttaccgg
     1741 agtagtcaaa tcccaaactg cgacaacctc tttatcagta gtatttgcag gcaaagaact
     1801 aataaccgac ccgaacatat ccatcagttt aattcctgcg ggtgcagcta tggcaatggg
     1861 atttgtcaga ttagatccgg acacattgaa agtttctgcc gggtaattgt tatcaaatgc
     1921 tattgcggta gcagtagtgg aaattacctg ctgtttttcg gcaccatcct gatacaaata
     1981 aagaatttca tcgctggtca gggccttatc atagatgctg aacttgtgaa aacttcctat
     2041 ccagtttgga tcgcccgtcc aaccgcctct gccaagatat gccaatgctg tacttacacc
     2101 ggctaatgta tttcctgcag caaggggact tgaactaatg aatgtaccat caatgtaata
     2161 tgcaatagtt gttgcattaa cggtataaac aaaatggtgc aatttgccat catcatattc
     2221 agggcctgta gcaccattcc aggtacttgt ttccaaagat accatacttc catcaaccgc
     2281 acgggcaatg gacaaaaacg tatagttttt ccctgcaccc gctactgttt caccaaaata
     2341 ggataacata gtccagccgg tatttttacc cacagcagaa gtacaccata cctctacggt
     2401 taactcggaa tatgagttta cgcctatgct ggcagccgga aaatccatat acccattcgt
     2461 cgatataaat gcattattcg caagggtagc agctccatga atggttccaa cgacaccacc
     2521 aatcgcatcg gttgccgatc ctccatcgaa agtccattga tgttttagat ttgttgtgcc
     2581 cggattagtt tgtgccgaca catgcacaat gatgcctaat gcaaccaaca ggcacaataa
     2641 aaagtaagtt ttcttcataa agcaataaat ttaaggtgta taattaatcg attctgttca
     2701 tagaatagac cccggcataa ttcaacagag ttcattaata gaaagttatt gaaaagcaat
     2761 gcgccaaaga taaagcataa agaggtagtt atttcaaaat attgatattg aaaagtggac
     2821 gtttttgtaa actgggagga caaaaaaata atgaaccggt taacaggata ttgtaaattg
     2881 catttacata aacaagaaga tagaaaccaa aacaaaaatc cctgtaagcc aaacaactta
     2941 cagggaattt tgtaataaaa ccatattacc ggtaaccgtc ggttagttac ttaaatctga
     3001 aataaataat tccattgtaa tctattccta cactgttctt gctgttcgtt ggcttgccga
     3061 cagggaattg ccgctggctt tcaacttccg caatggaaga aggacacagt tctttctttg
     3121 ctttatcagc ttccacaagg ccaagcccgg cggcttttga taaatcggca caagctcgct
     3181 caggtaagtc cagtttttgg taggatagcc cacggagata ccatgagtta gccagatccg
     3241 gatctaaccc gattgcaagt gtcatatcat aaatacattt ttcgtattca cccaacccga
     3301 aatagcccga accttttgta tccaaagtat gtgaatcatc aggtctcact aaaagtgatt
     3361 tgtcggcata ttccacacaa agtttgtact gttttgacaa gtaataagtc caaccgatac
     3421 tattgagcac ctctgcagtg tcgacaatta ttggagatgg tttaattcga atagacttca
     3481 acaagtgctg ataatcagac acggaacctg caaaatcttt cattttctct ttcagaccgg
     3541 cacgattata caaggacacc tgatcgtttg tgtcttttgc aatcagcaga ttcaggtcat
     3601 ccattgattg ttgatattgt ttcctcattg catacaccc
//
LOCUS       DATDNM010000301         3620 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1319855, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000301 DATDNM010000000
VERSION     DATDNM010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3620
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1319855"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2987
                     /locus_tag="VI413_05055"
     CDS             <1..2987
                     /locus_tag="VI413_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008640520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl hydrolase family 65 protein"
                     /protein_id="HEY6914025.1"
                     /translation="TNPQVLFPLYKVPDGYTKPDYPGTAKNLTAIMHQRVGFYVSKSG
                     RLLTMAFYGVAMDKKDDPNDGNGIGRVVREIKKDGTYGPIYFIHYNHAFNEKNTDYPF
                     FTKSKDKDFVKSCQEILDNPLYMMQWVEESDRGDKIIPLNKEYKAFNYYHLPDGKVAC
                     LWKFALTSISEDGGKTWLQPVERAKGFVTSNAKIWGQRLTDGSYATVYNPSEFRWPLA
                     ISTSVDGLNYTTLNLVHGEITRMRYSGNYKSYGPQYTRGIQEGNGTPPDKNMWVTYSV
                     NKEDMWVSRIPVPVKINATAQANDNFDKYSKISELTDWNIYSPLWAPVSLEKLAGKNW
                     LTLKDKDPFDFAKVVRKIPATKELKVEFDLLAEQANKGLFRIEFLDEKGIICSRLELK
                     NDSSFQAKGGSRFSNMMKYQAGKVYHVEAKLSTANRNITVFVDGKQVGLRMFFAPVAT
                     IERIAFSTGETNDFPTPDTPADQDYDVPNAGEQEPLAVFRIANLKTESLDNDAAASFL
                     KFANFEHYVNYFNTMEDENIAQAIPNAKAAAWMQKNIPLFECPQQNFEEMFYYRWWTL
                     RKHIKETPVGYAMSEFLVSRTYADKYNLISSALGHHIYESRWLRDTTFMNQAIRTWYR
                     GNEGAPMKKMMNFSSWNIDAQLNRYFVTGDKVFLLDLLKDLEAEYSRWETTHRLKSGL
                     YWQGDVQDGMEETISGGRKKQFARPTINSYMFGNAKALAQMEQLAGNADKTKLYSLKA
                     DTIKNLIETKLWSTKQGFFETLRTDSLANVREFIGYLPWYFNMPTTAKYDSAWTQLAN
                     EKGFSAPYGMTTAERRHPEFRTRGVGKCEWDGAIWPFATAQTLTAMANFMNNYPQKVT
                     TDSVYFSQLEKLVESQYHRGRPYVGEYMDEITGYWLKGDQERSRYYNHSTFNDLIISG
                     LVGLRPRMDNTLEINPLLPTDKWDWFCLDNVRYHNHNLSIVWDKNGSRYHVGKGLRIF
                     VDGKEVGASATLSKLLIKDALK"
     gene            2998..>3620
                     /locus_tag="VI413_05060"
     CDS             2998..>3620
                     /locus_tag="VI413_05060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914026.1"
                     /translation="MKKFFFIALLLCISIASNAIEITKLTCEFQQNPLAVNTLQPRFG
                     WQMKSAENGAAQSAYEIELRILYSPTENYIWETGVVLSSKSQGIRYTRSPIYGNNSQL
                     KWGETYTWRVRVADEKGNSSNWSDWAMFRTAPQFPSTQGEGSGVRWIGAIRADSARIP
                     AGKRFLSWEMGTPEYKAVWKNIDSVSRKSILLRKAFVAQKQIQEAIT"
BASE COUNT         1109 a          775 c          825 g          911 t
ORIGIN      
        1 ggactaatcc gcaggtactt tttccccttt ataaagttcc ggacggctat acaaaacccg
       61 attatcccgg cacagccaaa aacctgactg ccatcatgca tcagcgtgtt ggtttttatg
      121 tttccaaatc agggcgatta ctcacgatgg ctttttacgg tgtggcaatg gataaaaaag
      181 atgacccgaa tgatggaaac ggcattgggc gtgtggtgcg cgagattaag aaagacggta
      241 cctatggccc gatttatttt attcattaca accatgcttt caacgaaaaa aacaccgatt
      301 atccattttt cacaaagagc aaggacaaag atttcgtgaa aagttgccag gaaattctcg
      361 ataacccgct gtatatgatg caatgggtgg aagaatctga tcgtggtgat aagattatcc
      421 ctttaaacaa agaatataaa gctttcaatt actatcattt acccgatggg aaagtagctt
      481 gtttgtggaa atttgcactg acttccatta gcgaagacgg gggcaaaaca tggctccaac
      541 cagtggaacg cgccaaaggt tttgtgacca gcaatgccaa aatatgggga caacgcctca
      601 ccgacggtag ctatgccacc gtgtacaatc cttccgaatt tcggtggcca ctagccattt
      661 ctacttcggt cgacgggctg aattacacaa cattgaatct cgttcatggt gaaattaccc
      721 gcatgcgtta tagtggaaat tataaatcgt acgggccgca atatacccgc ggtattcagg
      781 aaggaaacgg tacgccgccc gacaaaaaca tgtgggtgac ctacagcgta aataaggaag
      841 atatgtgggt ttcgcgcatt ccggtgcccg taaaaatcaa tgccacagct caggctaatg
      901 acaattttga taaatactca aaaatatccg agcttaccga ctggaacatt tactcaccac
      961 tttgggcacc ggtttcattg gaaaaactgg ctggcaaaaa ctggttgacg ctgaaagaca
     1021 aagacccatt cgattttgca aaagtagtcc gtaaaattcc ggctaccaaa gaattaaagg
     1081 tagagttcga cctactagcc gaacaagcaa ataaaggtct gttccggatt gaatttttgg
     1141 acgaaaaagg tattatttgc tcccggttgg aattaaaaaa cgacagttca ttccaggcta
     1201 aaggtggttc acgcttttcg aacatgatga aatatcaggc agggaaagtg tatcatgtgg
     1261 aagcaaaact atcaaccgcg aaccgtaata ttactgtctt tgtggatgga aaacaggtcg
     1321 gactccgaat gttctttgct ccggtagcta ccatcgaacg tattgcgttc agcaccggcg
     1381 aaaccaatga ttttccaacg ccagatactc ctgccgatca ggattatgac gtgcccaatg
     1441 caggtgaaca ggaaccattg gctgtgttcc gtattgccaa tctcaaaacc gaatcattgg
     1501 ataatgatgc cgccgcttcg ttccttaaat ttgctaattt tgagcattat gtaaactatt
     1561 tcaacacaat ggaagatgaa aatattgcgc aagccattcc gaatgcaaaa gctgccgcgt
     1621 ggatgcaaaa aaatatcccg ttgtttgaat gtccgcaaca gaatttcgaa gaaatgtttt
     1681 actatcggtg gtggactttg cgcaagcata tcaaagaaac cccggttggt tatgccatgt
     1741 cagaattttt agtaagccgc acgtatgctg acaaatacaa tctgatttcg agtgcactcg
     1801 gccatcatat ttacgaaagc cggtggttac gcgatacaac atttatgaat caggctatac
     1861 gcacctggta ccgcggtaat gaaggcgcac caatgaaaaa aatgatgaat ttcagctcgt
     1921 ggaatatcga tgcgcagttg aaccgctatt ttgtcacggg cgacaaagtc tttttgcttg
     1981 atttgttgaa agatctggaa gcggaataca gccgttggga aacaacgcat cgcctgaaaa
     2041 gcggacttta ctggcagggc gatgtacagg atggcatgga agaaaccatc agcggtggtc
     2101 gcaagaaaca atttgcccgc cccaccatca acagctatat gtttggaaac gccaaagcat
     2161 tggcacaaat ggagcaattg gcaggaaatg ccgacaaaac gaaactgtac agtctgaaag
     2221 ccgacaccat aaagaacctg attgaaacca aactctggag cacgaaacaa ggatttttcg
     2281 aaaccctgcg caccgattcg ctcgccaatg tgcgggaatt tattggatat ttgccctggt
     2341 atttcaatat gccgactacc gccaaatacg acagtgcatg gacacagttg gctaacgaaa
     2401 aaggtttttc ggctccttat ggcatgacaa ccgccgaacg ccggcatcct gaattccgta
     2461 cccgtggtgt aggaaaatgt gagtgggacg gtgctatttg gccgtttgcc actgctcaaa
     2521 cgctgacagc catggcaaac ttcatgaata attatccaca aaaagtgacc acggacagcg
     2581 tttatttcag ccagttggaa aaactggtgg aatcgcaata ccaccgtgga cgaccatatg
     2641 tgggtgaata tatggacgaa attacaggtt actggctgaa aggcgaccag gagcgcagcc
     2701 gctattacaa ccattctaca ttcaacgacc tgatcatctc cggacttgtt gggcttcgtc
     2761 cgcgaatgga caatacattg gaaataaatc cgcttttgcc taccgataaa tgggactggt
     2821 tctgtctcga caatgtgcgc tatcacaatc ataatctgag tattgtgtgg gataaaaacg
     2881 gcagccgtta ccatgtcgga aaaggtttgc gtatatttgt agatggaaag gaagttggcg
     2941 cctcagcaac actctcaaaa ttattaatta aagatgcttt gaaataaact ccggaacatg
     3001 aaaaaattct ttttcattgc attacttctt tgtatttcaa tcgcttccaa tgccattgaa
     3061 ataaccaaac ttacgtgcga atttcaacaa aatccgctgg ctgtaaacac cttgcaacca
     3121 cgttttgggt ggcaaatgaa atctgccgaa aatggagcag cacaatcggc ttatgaaatt
     3181 gagttacgaa ttttgtacag tccaactgaa aattatattt gggaaacggg cgtagtactt
     3241 tcttcaaaaa gtcagggaat aagatataca agaagcccaa tttacggcaa taactctcaa
     3301 ttaaaatggg gagaaacata tacttggcgt gtccgcgtag ctgacgaaaa agggaatagt
     3361 tcaaattgga gcgattgggc aatgtttcga actgcacctc aattcccctc tactcaagga
     3421 gaaggatcag gggtgaggtg gataggtgcc attcgagccg attctgcccg cattcctgcg
     3481 ggaaaacgtt tcctgagttg ggaaatggga actcccgaat ataaagccgt ttggaaaaat
     3541 attgattcag tttcaaggaa aagcattttg ttgcgtaaag ctttcgtagc tcaaaaacag
     3601 attcaggagg ctatcactta
//
LOCUS       DATDNM010000302         4299 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1853705, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000302 DATDNM010000000
VERSION     DATDNM010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4299
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1853705"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..801
                     /locus_tag="VI413_05065"
     CDS             <1..801
                     /locus_tag="VI413_05065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914027.1"
                     /translation="EATKSAIIHNNFFTAKLNPALTDTTYIATSGYQLKSPAVMLDGA
                     QTKTVSNGTCYTVNQLKMYNPEYWNKEIRVEAEDNGWGRTATNYITSIYSGTGTGFTI
                     SNNSYLMLTDNTVSSLSSLYVTFPIPNTFSAKYNIYCVFVPSTISDATDQRPSKVKFY
                     LSYTDNKSSAGTAAPQGVQVTNAPIDATNTVLASGTSAVFTTNPTAITKMLVAKNFTF
                     PFSNLIYNNASAIQVALKVQNATARTALEQASYNRNLRIDCIILEPVQ"
     gene            831..2354
                     /locus_tag="VI413_05070"
     CDS             831..2354
                     /locus_tag="VI413_05070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914028.1"
                     /translation="MKTIIKLLLVFLPLAGSFASTQDTIYVMRSGEVIYKKAVSELDS
                     ISFENWSVNRRSITEKIATDDNYSIFYQGLVATGLVDSLKADRDKTYDFMKYMSLLSF
                     SKDMGQWFYDELPRLKRSGFTLFMESDSVFILNGIKNLSELKTYAAGIYNAVYPEDAA
                     VTDLRNRKNSLNRFIAYHIINKKLSLRMLIDAYDTDHMLKTIDMYEYLETFCPGTLIE
                     IKKERSTNQTNIINYVTQTGNSVRIINQFGAPEIYNGYYYGIDKPMCYDINVLNELSG
                     KRLRFDFAGFFSELTNNNLRGNGTINSPSQNINYKIPRGYLSRINFSEQTNVSYLTPY
                     DKFQDYQGDEIVLAPTTGKLYDFTITTPPVPAGTYEVRYGHMTNGKRGVAEMYVDGIS
                     AGAPVNLNSKSTNGEIGYEFPHTIAADYEGYENDKVMRNHGYMKGPACYKVPKLGWTT
                     GVNARYSENNLRKILGTFNFTSAGTHTFTVKGLSSGEFQCDFIEFVPVNALENEDIY"
     gene            2410..3831
                     /locus_tag="VI413_05075"
     CDS             2410..3831
                     /locus_tag="VI413_05075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914029.1"
                     /translation="MNQVFIYKTRILRNIYCDVNKLACLLIVFVAVAATDLAAQTATT
                     VSMPTNTIQKSGAVTDSLSVNSVYKPVSLSSKTHIVDWVINIGETSIDGSRFAFYKLY
                     LSSLAATYSLFVPTDEYFIKYIDPIAYGQDVQGVLKFWYNTKTAAVNATVYRYNKSTG
                     VIGDSVALITNSTFLQNRLWKLLDSHIVVGNVESGNSYYVSRANDIVKIAGTGATLNV
                     QGGGDLVNNTVAHTTDYYQQTNGSTYFLDKPIDTALKSVYTILSNTPQFQEFFTLLNG
                     VPVTSVQQIFAIQGVDYRVKFFNAYHYTVYVPTNEVILAAIANNTIKNWATINAMPDG
                     ASKTAEVDKLIRFLKYHFQDNAVFVDNQTVNGIYPTAILKTDNTVTRFGTAKSKFLKV
                     GVTGGAAGLTITAESGVTAHVVKSDGLYNIIAKDYVFARLPSGYKNVDGTGSVTGYTF
                     DTSIISTSASAVIHQIDNVLTFE"
     gene            4000..>4299
                     /locus_tag="VI413_05080"
     CDS             4000..>4299
                     /locus_tag="VI413_05080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914030.1"
                     /translation="MSLMLNNKADFILEYNEHSGVQLKKDDVDWSQSKVFFISLGFTD
                     YQKHSINFKDVPFELWEIKRYENNLLGMIQHKNNSDESITIISDNPENIVSKVSKE"
BASE COUNT         1368 a          800 c          868 g         1263 t
ORIGIN      
        1 gaagctacca aatcggccat tattcacaat aactttttta cagctaaact gaatcccgct
       61 ttgaccgata cgacgtacat agctacatcc ggctatcagt tgaagtcgcc tgcagtgatg
      121 cttgacggtg cgcaaacaaa aacagtaagc aatggaacct gttacacggt taatcagttg
      181 aaaatgtata atcctgaata ttggaacaaa gaaatcagag tggaagcaga agataacggt
      241 tggggacgga cagctacaaa ttatataaca agtatttatt cgggaacagg aactggtttt
      301 acaatttcca ataacagtta tttaatgctt accgataaca ccgtaagttc attgtcatca
      361 ctttatgtaa ctttccctat tccgaatact ttttcggcaa agtataatat ctattgtgtt
      421 tttgtaccat ccactattag tgatgcaact gatcagcgtc cctcgaaagt gaaattctat
      481 ttgtcgtata cggacaataa atcaagtgcc ggaactgcag caccccaggg cgttcaggta
      541 acaaatgctc cgattgatgc tactaacacc gtgctggcat ccggtaccag tgctgtattt
      601 accaccaatc ctactgcgat aaccaaaatg cttgttgcaa agaattttac ctttcctttt
      661 tcgaacctga tttataacaa tgcttccgcc atacaggtag cactgaaagt tcagaatgca
      721 acagccagga cggctcttga gcaggccagc tacaacagga acctgcgcat agactgtatt
      781 atcctggaac ctgttcaata acaataaaaa tatttttgta aaccagatat atgaaaacaa
      841 tcataaaact actattggta tttcttccgt tggcaggttc gtttgcttca acgcaggaca
      901 ctatttacgt catgcgttca ggagaggtta tctataaaaa agctgtatcg gagcttgaca
      961 gtatcagctt tgagaattgg tcggtaaatc gaagaagcat taccgaaaag atagcaacag
     1021 atgataatta tagtattttt tatcagggac ttgttgctac ggggcttgtt gattcgctga
     1081 aggctgaccg ggataaaacc tatgatttta tgaagtatat gagcctctta tctttcagta
     1141 aagacatggg tcaatggttt tatgacgaac ttccccgtct taaaagatca gggtttacct
     1201 tatttatgga aagtgactcg gtatttatac tcaatggtat caagaacctg tctgaattga
     1261 aaacatatgc tgccggcatc tataatgcag tatatcctga agatgcagcg gttacggatt
     1321 tgagaaatcg gaaaaatagt ttaaaccggt ttattgcgta tcatatcatt aataaaaaac
     1381 tatcacttcg gatgcttatt gatgcttatg atactgatca tatgcttaaa actattgaca
     1441 tgtacgagta tcttgaaacc ttttgtccgg gaactttgat agaaataaag aaagaacgtt
     1501 ccactaatca gacaaatatc attaattacg ttactcaaac cggtaattcg gttcgtatta
     1561 tcaaccagtt tggagcccct gaaatttaca atggctacta ttatggaatt gataagccca
     1621 tgtgttacga tattaatgta ttgaacgagc tatcagggaa acggttacgt tttgattttg
     1681 ccggtttctt ttcggagtta acgaacaata atctacgtgg caacgggact ataaattctc
     1741 cctctcaaaa tattaattat aaaattccga ggggatattt aagccgaatt aacttttcag
     1801 aacaaacaaa tgtatcgtat ttaactcctt atgataaatt ccaggattat cagggagatg
     1861 agatagtttt ggcaccaaca accggtaaac tttacgattt cacaattact acaccgcctg
     1921 ttcctgcagg gacttatgag gttcgctatg gccatatgac gaatggaaaa cggggagtag
     1981 ctgaaatgta tgtagatgga atatctgcag gagcaccggt aaatctgaat tcaaagtcaa
     2041 caaatggtga aatcggttat gagtttcccc ataccatagc ggccgattat gagggttatg
     2101 aaaatgacaa ggtaatgcgt aatcatggtt atatgaaagg tccggcatgt tataaagtcc
     2161 cgaaactggg ttggaccacc ggagtaaacg cacggtactc ggaaaataac ttgagaaaaa
     2221 ttttgggtac tttcaacttc acttcggccg gtacacatac atttaccgtg aaaggactaa
     2281 gctcaggtga gtttcagtgt gatttcattg aatttgtgcc ggtaaatgcg ttagaaaacg
     2341 aagatatata ttaacggtaa ttctttcctg acttattttt atttagtgta ttttaaaata
     2401 taaaattata tgaaccaggt atttatatat aaaacccgaa ttttacggaa tatatattgt
     2461 gatgtaaata agttggcatg cctcctgatt gtctttgtag cggtcgctgc aacagatctg
     2521 gcggcacaga ctgcaacaac ggtttccatg ccaaccaaca cgattcaaaa atccggagca
     2581 gttaccgaca gtttatccgt caatagcgtt tacaagccgg tgtcattaag ctccaaaacc
     2641 cacatagttg actgggtaat taatattggt gaaacaagca tagatgggtc acgatttgca
     2701 ttttataaat tatacttaag ctcactggca gcaacctaca gcttgtttgt gccaacagat
     2761 gagtatttca taaaatacat tgacccgatt gcatacgggc aggatgtaca gggtgttctt
     2821 aagttttggt acaatactaa aacggccgca gtaaatgcca ctgtttaccg gtataataaa
     2881 agcacaggtg taattggcga ctcggtggct cttattacaa attcaacatt tttgcaaaat
     2941 cgcttgtgga agctattgga tagccatatt gtggtgggaa atgtagaatc gggaaacagc
     3001 tattatgtta gcagggcaaa tgatattgtg aagatagccg gaacgggagc aacgctgaat
     3061 gttcagggtg gtggcgattt ggtaaacaat actgttgcac atacgactga ttattatcaa
     3121 caaactaatg gaagtactta tttcctggat aagcccattg atacagcgct taaatcagta
     3181 tatactatct taagcaacac ccctcagttc caggaatttt ttactttgct gaatggcgtg
     3241 ccagtaacaa gtgtacagca gatttttgcc attcagggcg tggactaccg tgttaagttt
     3301 ttcaatgcct accattatac ggtgtatgtt ccaaccaacg aagtcatttt agcagccatt
     3361 gcaaacaaca ccataaaaaa ctgggctaca ataaatgcta tgcccgacgg agcctcaaaa
     3421 acagcagaag tcgacaaatt gatacgtttc ctgaaatatc atttccagga caatgctgtt
     3481 tttgttgata accagaccgt aaacggcatt tatccgactg caatactcaa aacagataat
     3541 acggtaacac gttttggtac agcaaaaagc aagtttctta aagtaggtgt cacgggtggt
     3601 gcagccggtt tgaccattac tgccgaatca ggtgttacag cccacgtagt caagtcggat
     3661 ggattgtata atattattgc aaaggactat gtttttgcaa ggcttccttc tggctataag
     3721 aatgttgatg gcactggctc agttacaggc tacacctttg atacatctat aattagtaca
     3781 tctgcctctg ccgttatcca ccaaattgac aatgtgttga catttgaata atagttttcc
     3841 tcaataatat agcctttaac ttgctatttg taaagagtga gtttgcaatc aaaaacttca
     3901 gaatagacac gttaggattt gatctggaaa acaagtcctt tgtagtgtga atataaaaaa
     3961 ggaaccaact tctctgtgat tgatcaaggt tatacctata tgtcactaat gctaaataat
     4021 aaagccgatt tcattctgga atataacgaa catagcggag tccagttaaa gaaagacgat
     4081 gtggattggt ctcagtcgaa agtgtttttt atttcactag gttttaccga ctaccagaag
     4141 cactctataa actttaagga tgtccctttc gagttgtggg aaataaaacg atacgaaaac
     4201 aacctgcttg gaatgattca gcataagaat aattcggatg agagtattac tattatttca
     4261 gataatcccg agaacatagt ttcgaaagtt tcgaaagaa
//
LOCUS       DATDNM010000303         2144 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1961486, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000303 DATDNM010000000
VERSION     DATDNM010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1961486"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1971
                     /gene="rnr"
                     /locus_tag="VI413_05085"
     CDS             <1..1971
                     /gene="rnr"
                     /locus_tag="VI413_05085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011967281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008997 - ribonuclease R activity
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEY6914031.1"
                     /translation="LLYELLDEDFLVEISRGKFKVNSRGGYLEGVIDRQGVKTYLIPD
                     DGGEPVFIPERKTNHAFLNDKVKVFLYAHRRGQMPEGEVVEIIKRAKDTFVGILQVSE
                     NFAFLISDNKVVTNDIFIPKSKLNGGKNGQKAVVKLMAWEPNLKNPVGEVIDVLGEKG
                     DNTTEMHAILAEFGLPYKYPADVEAAALKIDAGVTPEEVAKRIDMRNVTTFTIDPRDA
                     KDFDDALSLRRLNNGLWEVGVHIADVTHYVRPESIIEQEGRERATSVYLVDRTIPMLP
                     EHLSNGICSLRPNEDKLTYSVIFQMNDKAEIQHYEIAKTVTCSNRRFTYEEAQAIIET
                     GEGDFKEEILTLDRLAKILREKRFQEGAIAFDRVEVRFDIDATGKPISVFFKEQKDSN
                     KLIEEFMLLANKTVATHIGRPGKGQKAKTFVYRIHDVPNPDKLNNFAAFIKRFGYTLK
                     TTGKQASVSSSINHLLDEVQGKKEQNLIETLAIRSMAKAIYSTSNMGHYGLAFDFYTH
                     FTSPIRRYPDMMVHRLLEKYAGGGHSVNAQEYEDYCQHSSDMEQLAANAERASIKYKQ
                     VEFMADRIGQVFDGVISGVTEWGIYVELIENKCEGMVPIRDLDDDFYTLDDKNYCLVG
                     RRFHKKFQLGDEITVKVARANLDRKQLDFTIA"
BASE COUNT          618 a          413 c          543 g          570 t
ORIGIN      
        1 ttgttgtacg aattgctgga tgaagatttc ttggtagaga tttcgcgcgg aaagtttaaa
       61 gtcaattcac gtggcggtta tctggaaggt gttatcgacc gtcagggtgt gaaaacctat
      121 cttattcccg acgatggggg cgaacccgta tttatccctg agcgtaaaac gaatcatgct
      181 tttctgaacg ataaagtaaa ggtctttttg tatgcacatc gccgtggaca aatgcccgaa
      241 ggtgaagtgg tagagattat caagcgtgct aaagatacgt ttgtaggcat tttgcaagtg
      301 tcggagaatt ttgcctttct tatttcggac aataaagtgg tgactaacga tatatttatc
      361 cctaaaagca agctaaacgg aggaaagaat ggccagaaag ccgttgtgaa gctgatggcg
      421 tgggagccga atctgaaaaa ccctgtcggg gaagtcattg atgtgctggg agaaaaaggt
      481 gataatacca ccgaaatgca cgctattctg gcggaattcg gtttgccgta caaatatccg
      541 gcagatgtgg aagctgcagc cctaaaaatt gatgcaggcg ttacccccga agaagtggca
      601 aagcgtattg atatgcgcaa tgtgaccaca tttactattg acccgcgcga tgcgaaggat
      661 tttgacgatg cgttgtcgct ccggaggctg aataacgggc tttgggaagt gggcgtgcat
      721 attgccgatg taacccatta tgttcgtccg gaaagtatta ttgaacagga agggcgggag
      781 cgggctacgt ccgtctattt ggttgaccgg accattccta tgttacctga gcatttgtca
      841 aatggaattt gttcacttcg tccgaatgaa gataaactga cttattcggt tatttttcag
      901 atgaacgaca aagctgaaat tcagcattac gaaattgcaa aaacggtaac ctgcagcaat
      961 cgccgtttta cctacgaaga agctcaggct atcatcgaaa ccggtgaagg cgattttaaa
     1021 gaggaaatcc tgacgctgga ccggctggca aagattcttc gtgaaaaacg tttccaggaa
     1081 ggagccattg ctttcgacag ggtggaagta aggtttgata ttgatgctac cggcaaaccg
     1141 atatctgtat tttttaaaga gcaaaaagac tccaataagc tgattgaaga atttatgttg
     1201 ctggctaata aaaccgttgc aactcatata ggccggcccg gaaaggggca aaaagccaaa
     1261 acatttgtct atcgtatcca tgatgtgcct aaccctgaca aactgaacaa ttttgcagcg
     1321 tttatcaaac gttttggata tacgctcaaa acgacaggca agcaggcttc cgtgtcgagt
     1381 tctatcaatc atttgctgga cgaggtgcag ggcaagaaag agcagaacct gattgaaaca
     1441 ttggctatac gttccatggc aaaagccatt tattccacat cgaacatggg acactatggg
     1501 ttggcgtttg atttctatac gcatttcact tcgccaattc gccgttaccc ggatatgatg
     1561 gtgcaccggc tgctcgagaa atatgccggt ggcggtcata gcgtgaatgc gcaggaatat
     1621 gaagactatt gccagcatag ttccgatatg gagcaactag cagccaatgc cgagcgagct
     1681 tcgattaaat acaagcaggt tgaatttatg gccgaccgta tagggcaggt attcgatggc
     1741 gttatttcgg gcgttaccga atggggaatt tatgttgagc taattgaaaa taaatgcgaa
     1801 ggcatggttc cgattcgcga tttggacgat gatttttaca cgttggacga taaaaattac
     1861 tgtttggtgg gccggcggtt tcacaaaaag ttccaactgg gcgacgaaat cacggtaaaa
     1921 gtggccagag ccaacctgga caggaagcaa ctggacttta caattgctta aaaatgcagt
     1981 ctttttggtg atgttactat ctcataatat gagatttgcg ttttgatgtg tatatgtgat
     2041 acaacttttt atcatatttc cattgtggaa ttgaaaaata gcgctatctt tgcactcgca
     2101 aaacaaagca atggctgcgt agctcaactg aatagagtac caca
//
LOCUS       DATDNM010000304         8428 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_786146, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000304 DATDNM010000000
VERSION     DATDNM010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 8428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8428
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_786146"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            118..1143
                     /locus_tag="VI413_05090"
     CDS             118..1143
                     /locus_tag="VI413_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEY6914032.1"
                     /translation="MISKIIAEDLITKVKKAIDSVDKIVIVSHVGPDGDAMGSTLALW
                     HYLMTIEKEPVVIVPTAFASFLSWLPGSEFVLVYEDQKEKSDELIAEAELIFTLDFNQ
                     ESRMAKMADAVINAAAPKILVDHHLHPGDFPKIAVSYPEISSTSELIFRLICRLGDFS
                     KINLACAECIYTGMMTDTGGFTYNSNGQEIYIIIAELIKLGVDKDDIYRKVFNTYSAD
                     RLRLMGFCLYNKMKVYPEYRAALITLTTAELKQFNFTNGDAEGFVNIPLSIQGVDFSV
                     FMREDTDKIKISLRSQGTFPANKVAADLFNGGGHLNASGGESYMSLEETIAKFEEALP
                     DYRDFLE"
     gene            1274..2479
                     /locus_tag="VI413_05095"
     CDS             1274..2479
                     /locus_tag="VI413_05095"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cofactor-independent phosphoglycerate mutase"
                     /protein_id="HEY6914033.1"
                     /translation="MKYLIILGDGMADEPIELLGNKTCLQASNKPNIDKIAALGRSGL
                     LDTIPEGFAPGSEIANMSVLGYDVAKVFEGRGSLEAASMGVSIEDGEMAMRCNLICIE
                     NNKIKNHSAGHISNEEANELILFLQKELGSDVINFYPGVSYRHLLKVKGGKKQLACTP
                     PHDVPGTPFTDVMIEAETEDAKETADLLNDLILRSQELLENHPVNLKRAATGKDKANS
                     IWPWSPGYKPAMKTLLETYNLKSGSVISAVDLIKGIGVYAGLKVIEVEGATGLYDTNY
                     EGKAQAAIEALRTNDFVYLHIEASDEAGHEGDVALKVKTIEYLDSRVVKPIFEEISTW
                     AEPVAIAILPDHPTPCVYKTHTNSPVPFIIYKPGEKADDVMVYDEFAAEKGSYGLLKG
                     AEFMKELVK"
     gene            2613..3914
                     /gene="thrC"
                     /locus_tag="VI413_05100"
     CDS             2613..3914
                     /gene="thrC"
                     /locus_tag="VI413_05100"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015531327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEY6914034.1"
                     /translation="MKYYSTNKKVSGVSLQDAVVKGLAEDKGLFMPDSIKALPQSFFD
                     TIETLSFQEIAYTVADAFFGEDVEAEALKKIVYETLNFDVPLVHVNDNIYSLELYHGP
                     TLAFKDVGGRFMSRLLGYFIQKQNDTKVNVLVATSGDTGSAVANGFLGVEGIHVYVLY
                     PKGLVSPIQECQFTTLGQNITALEVDGTFDDCQALVKSAFMDDELNAKLKLTSANSIN
                     VARFLPQSFYYFYAYAQLKKLGKANDVVMCVPSGNFGNITAGLFGKRMGLPIKRFIAA
                     NNRNDIFLQYLQTGVYTPRPSVSTIANAMDVGDPSNFARVLDLYGGSHAAISAEISGV
                     SYNDEQIAETLKVCKQETGYLLDPHGAVGYKALQEGLAANEIGVFLETAHPAKFLETV
                     ENIIGEKVEIPQKLQEFMKGEKKSLPMAKDFQSFKSYLMTI"
     gene            complement(3969..4412)
                     /locus_tag="VI413_05105"
     CDS             complement(3969..4412)
                     /locus_tag="VI413_05105"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: protein motif:HMM:NF013661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEY6914035.1"
                     /translation="MHTCKNRNIDAVIVHSVFNAAEGDKYDVDLVIKQFSRYRVSSHY
                     IIGRDGTIYQLVNEKNISYQAGHSQLPDGRTGVNSCSIGIELITTKDSLDSPTQMQIK
                     SLTILVKDIKKRYKIKYVLRHSDIAPGRKTDPWNMNWEDFVKRIE"
     gene            complement(4547..4987)
                     /locus_tag="VI413_05110"
     CDS             complement(4547..4987)
                     /locus_tag="VI413_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HEY6914036.1"
                     /translation="MTGFMELGYLGLFIASFLAATVVPFSSEVIFSAMVFGGLDAWTC
                     VWVATLGNWLGGMTSYYVGLLGKIEWIEKYFHIKKEKMENAAVKIQKYGDWFAFFSFV
                     PFIGDVIAVATGFFRCKWWKVAISMLVGKFARYILWMYFNGLFM"
     gene            complement(4988..5992)
                     /locus_tag="VI413_05115"
     CDS             complement(4988..5992)
                     /locus_tag="VI413_05115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914037.1"
                     /translation="MKAHIKVSIKQFIIPSIPLAILLVLSCVGLWFSAYFGTRYTSPV
                     ALSTNIFNDIDAVITPNSLLSNLIGISFTLLNAFLLAQINNRFTIIRTRTFLPLFVFL
                     LLMSSWNETHIVSGSHLVLTLMLLAMFYILSMSRDKKSSEQAFMGSLLISVSSLIINS
                     YIFIIPVCWIGFMIFQSFSLRTFLASVFGTLAPWVLFISAKYLFINELDFQHILIIKP
                     NIEFGISTVPMPVLIYSAAFICISIVSIIGLYSLSNSDAIHTRNKLNFLVLLYISLLI
                     LAFVFRNQFILFLPLIAMVFSLLFAHPFTLKQNNFYGIIFIIFCAINIAYVISKYILF
                     "
     gene            complement(6136..8229)
                     /locus_tag="VI413_05120"
     CDS             complement(6136..8229)
                     /locus_tag="VI413_05120"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HEY6914038.1"
                     /translation="MKKTLLTLMIGLTLMGSAKTNNPFFETYKNKYGAPPFDKIKNEH
                     YMPAFKEGIKQHQAEINAIANNKNAATFGNTIAAMDYSGDLLKKVSSVFFNLYSAETN
                     DGMAKIANEVSPILSEHNDNIYLNSKLFRRVKTLYDKRTKLGLTPEQIRLLEKIHREF
                     VRSGAALNEEQKAKLREINKELGLAELAFGQNVLDETNSYKKFVTKEADLDGLPESVR
                     QAAAEAAKEAGKNGEWLFTTQKASFIPVLQYSENRELRKELLLAYSTRANHDNDKDNK
                     AVINKIMKLRTQKAQLLGFETSAAFILDDTMAKTPKTVYDFLQTVWTPALAKAKQEAT
                     ELQKLMDAEGKDEKLEPWDWWLYSEKLRKAKYDLDEEALKPYFKLENVRQGVFDLATK
                     LYGLKFKKLEGMPVYHKDVEVFEVTNADGSFIGVLYTDYFPRAGKRAGAWMENITPQY
                     KKDGKNYRPIICNVGNFTKPTADKPSLLTMDEVETLFHEFGHALHGLLTQCTYPSLSG
                     TDVARDFVELPSQVMENWCWEPEVMKTYAKHYKTGEIMPKELMDKIQLAGTFNQGFIN
                     TELLSASIMDMDYHMIKDTVNFDVAAFEKASLDKMGMIPQIIVRYRSTYFNHIFTGGY
                     NAGYYSYTWAAVLDADAFRAFKETGDIYNPEKAAAFRKYILERGDSEDPMKLYRSFRG
                     ADPNPNALLEKRGLK"
     gene            complement(8308..8415)
                     /locus_tag="VI413_05125"
     CDS             complement(8308..8415)
                     /locus_tag="VI413_05125"
                     /inference="COORDINATES: protein motif:HMM:NF013821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin kinase"
                     /protein_id="HEY6914039.1"
                     /translation="MIFIKKIRDEKKFENIDELIAQLQKDKKLVVEMNK"
BASE COUNT         2517 a         1545 c         1780 g         2586 t
ORIGIN      
        1 gctgttgccg aacaaggtgc ttatgtgctg aatattaaag attaactccg caaaagttgt
       61 aaccatctca aaatcgtatt tttttgctac ttttgcattc aaattaaaat cggataaatg
      121 atttctaaaa ttattgctga agaccttatt acaaaggtaa aaaaggccat tgacagtgta
      181 gacaaaattg tgattgtttc gcatgttggc cctgatggag atgctatggg ttccacgttg
      241 gcgttatggc attacctgat gactattgaa aaagaacctg ttgtgattgt tccaacagct
      301 tttgccagct tcttgtcctg gctgcccgga tctgaatttg tgctggttta cgaagatcag
      361 aaagaaaaat ctgatgaatt aattgcagaa gcagaactga tctttaccct ggattttaat
      421 caggaaagcc gaatggccaa aatggctgat gctgtaataa atgctgcggc tcctaagatt
      481 ttagtcgacc atcatttgca cccgggggac tttcctaaaa ttgccgtttc atatccggaa
      541 atatcttcta ccagcgaatt gatttttagg ttaatctgcc ggctgggaga tttctctaaa
      601 atcaatctgg cttgtgccga atgtatttat actggtatga tgactgatac cggtggtttt
      661 acctataact ccaacggtca ggaaatttat attatcattg ctgaattgat aaagttaggt
      721 gttgataaag atgatattta tcgtaaagtt ttcaatactt actcggctga cagactgcga
      781 ttaatgggct tctgtctgta taataaaatg aaagtttatc cggaatatcg tgcagctttg
      841 ataacactca ctacagcaga attgaagcaa tttaatttta cgaatggaga tgcagaaggg
      901 tttgtaaata taccgctttc cattcaaggt gttgatttct ccgtttttat gcgcgaagat
      961 actgataaaa ttaaaatatc actgcgttcg caagggactt tccctgcaaa caaagtagct
     1021 gccgatttgt ttaatggcgg tggacacctg aacgcttccg gcggtgaaag ttatatgtcg
     1081 ttagaagaga ccatagctaa atttgaagaa gcgttaccgg attatagaga tttcttggaa
     1141 tagaacccct agcccctaaa ggggaactaa gttggtctgt cttttaagaa aaactcaata
     1201 tttaggaact aaaataacac agtcaaaaca aataaagtaa cttaatcccc ttttggagat
     1261 tagggtcaat aatatgaaat acttaataat acttggcgac ggaatggcag atgagccaat
     1321 cgaattgctt ggaaataaaa cctgtttgca ggcttctaat aagccgaaca ttgataaaat
     1381 agctgcattg ggtcgtagtg gcttgctgga tacaattccg gaaggctttg caccgggtag
     1441 tgaaattgct aatatgagtg tgcttggata cgatgttgcc aaagttttcg aaggaagggg
     1501 ctcgttggag gcggcgagca tgggtgtgtc tatcgaagat ggcgaaatgg ccatgcgttg
     1561 caatcttatt tgcattgaaa acaacaagat aaagaatcat tccgcgggcc atatcagcaa
     1621 tgaagaagct aacgaactga ttcttttttt gcaaaaggaa cttggcagtg atgtgattaa
     1681 cttctatccg ggagtttcgt accgccattt gttgaaggta aaaggtggca aaaagcaact
     1741 ggcttgtaca ccacctcacg atgttcccgg aacgcccttc accgatgtga tgattgaagc
     1801 tgagacagaa gatgcaaaag aaacagctga tttgctgaat gatctgattt tgcgttcgca
     1861 ggagttgctg gaaaatcatc cggtaaatct gaaacgtgca gcaacaggta aagacaaggc
     1921 taacagcatt tggccctggt ctccgggtta taaacctgcc atgaaaactt tgcttgaaac
     1981 gtataatctg aagagcggat cagtaatttc ggctgtggat ttgatcaaag gtattggcgt
     2041 ttacgcaggt cttaaagtga ttgaagtgga aggggcaacc ggtctttatg atacaaatta
     2101 tgaagggaaa gcacaagctg ctattgaggc gcttcgtacc aatgattttg tatatctgca
     2161 tatcgaagca agcgacgaag ctggccatga aggcgatgta gcacttaaag taaaaaccat
     2221 tgaatacctg gactcacgtg tagtaaagcc aatttttgag gaaatttcta cctgggccga
     2281 accggttgct atagctattt tgccggatca tccaacgcct tgtgtgtata aaacgcacac
     2341 caactcaccc gtgccgttta ttatttacaa accgggagaa aaagctgatg atgtgatggt
     2401 ttacgatgag tttgctgcag aaaaaggaag ttacggtctg ctaaaagggg cggaatttat
     2461 gaaagaactt gtcaagtaaa agaaaacccc tagcccctaa aggggaacta ggcaagtttc
     2521 gtttattata tcattcattc gtatttgtgg aaaataaata gttgaaattt taaatactaa
     2581 cttagtaccc ctttaggggc taggggaatc ttatgaaata ttacagtact aataaaaaag
     2641 tgagtggcgt tagtttgcag gacgccgttg tgaagggttt ggccgaagat aaaggcttgt
     2701 ttatgcccga ttcgattaaa gcattgccgc aatcgttttt cgatactatt gaaacactgt
     2761 cgtttcagga aattgcttac acagttgcag atgcgttctt tggtgaagat gtggaagccg
     2821 aagcgttgaa aaaaatcgtg tatgaaacat tgaattttga tgtgccgttg gttcacgtaa
     2881 atgacaatat ttacagcctg gaattgtatc acggccctac gttggctttc aaagatgtgg
     2941 gtggacgctt tatgtcgcgt ttgttgggtt attttatcca aaaacaaaat gacaccaaag
     3001 tgaatgtgtt ggtagctact tcgggtgata caggaagtgc agttgcaaat gggtttcttg
     3061 gggtggaagg tattcacgtg tatgtgcttt atccgaaagg gttggtaagt ccgattcagg
     3121 aatgccagtt tacaacgctg ggacaaaata ttactgcatt ggaagtcgat ggcacatttg
     3181 acgattgtca ggcattggta aaatcggctt ttatggacga cgaactgaac gccaaactta
     3241 aacttacttc ggctaattca atcaatgtag cccgtttttt accacaatca ttctactatt
     3301 tttacgcgta tgcccaatta aaaaagctgg gtaaagcaaa cgatgttgtg atgtgtgttc
     3361 cgagtggtaa ctttggaaat atcaccgccg gattgtttgg aaagcgtatg ggtttgccaa
     3421 ttaaacgctt tattgcagcc aataatcgta acgatatttt cctgcagtat ttgcaaacag
     3481 gtgtttatac accacgtcct tctgtatcaa ccattgccaa tgccatggat gtgggcgacc
     3541 caagtaactt tgcccgtgtc ctggatttgt atggtggctc gcatgctgcg atttctgccg
     3601 aaattagcgg agtaagttac aacgatgagc aaattgctga aaccttgaaa gtttgcaaac
     3661 aggaaacagg ttatttgctg gacccacacg gggcagttgg ttataaggcc ttgcaggaag
     3721 gattagctgc gaatgaaatt ggtgtttttc tggaaacagc tcacccagcc aaattccttg
     3781 aaacggtaga aaatataatc ggcgaaaaag tagagattcc tcaaaagctt caggaattta
     3841 tgaaagggga gaagaaaagt ttgccaatgg ctaaggactt ccaatctttt aaaagctatt
     3901 taatgactat ttaaatatgt attcagataa aaatgaaaac gagtgaatcc taaaattcac
     3961 tcgttttttt attctattcg cttcacgaaa tcttcccagt tcatattcca tggatcggtt
     4021 ttacgacccg gcgcaatgtc gctatgacga agcacatatt tgattttata gcgcttttta
     4081 atatctttca ccaatatggt cagcgatttt atctgcattt gtgtggggga atccagactg
     4141 tcttttgtgg tgataagttc tatgcctatt gagcatgagt ttaccccggt tcttccgtcg
     4201 ggtaactggc tgtgcccggc ctgatatgag atgttttttt cgtttaccaa ttggtaaatg
     4261 gtgccatcgc gaccgataat ataatgtgaa ctgactctgt atcgtgagaa ttgttttatg
     4321 accaaatcaa catcgtattt gtcgccttcg gcagcattaa ataccgaatg tacaatcaca
     4381 gcgtcaatat tccggttttt gcatgtgtgc attccgaagt ttactgtttt gtttacaatt
     4441 ttaaggtttg attgagacca tactgccatg caacttaaaa caataagcag tattagaatc
     4501 ttaaatctat aatacataaa gagatagctg tataaaaata atgaaatcac ataaataatc
     4561 cgttgaaata catccaaagg atatagcgtg caaatttgcc caccaacatt gaaatggcta
     4621 ctttccacca tttgcaacgg aaaaatccgg ttgcaactgc aatcacatcg ccaataaaag
     4681 gaacaaaaga gaagaacgca aaccaatcgc catatttctg aattttaact gcggcattct
     4741 ccattttttc tttttttata tggaagtatt tttcaatcca ctcaattttg cccaataatc
     4801 caacataata actggtcatt ccacctaacc agtttccgag tgttgccacc caaacgcaag
     4861 tccatgcatc taatccacca aacaccatcg ctgaaaaaat gacttccgaa ctgaacggta
     4921 ctactgttgc tgccaaaaat gaagcaataa aaaggcccag atagccaagt tccataaatc
     4981 cggtcattta gaacaaaatg tatttagaga ttacgtaagc gatgtttata gcgcagaaaa
     5041 tgataaaaat gattccataa aagttgtttt gtttcagcgt aaaggggtga gcaaataata
     5101 gtgaaaaaac catagcaatc agtggtagaa ataaaatgaa ctgatttctg aaaacaaagg
     5161 ctaatattaa aagcgaaata tatagtaaaa ctaagaaatt cagtttgttg cgtgtgtgga
     5221 tggcatcgct gtttgataat gaatataatc cgattatact tactattgat atgcaaataa
     5281 atgctgctga ataaattagt accggcattg gaacagttga aatgccgaat tcaatattgg
     5341 gtttgataat taaaatgtgt tggaagtcca gttcatttat aaacagatat ttggctgata
     5401 taaaaagaac ccatggagct aacgttccaa atacggatgc taaaaaagtt cgcaacgaaa
     5461 aactttgaaa tatcataaat cctatccagc ataccggtat gataaaaatg tatgagttga
     5521 taatcaggct gctaacgcta atcagcaaac tgcccataaa tgcctgttcg gatgattttt
     5581 tgtcacgcga catgcttagt atgtaaaaca tggctaaaag catgagggtg agaacaaggt
     5641 gtgagccact aacgatatgg gtttcattcc aggaactcat caacaataaa aatacaaaaa
     5701 gtggcaaaaa agtccgcgtc cggataattg tgaaacggtt atttatctga gccagaagaa
     5761 aagcatttaa tagggtaaat gagattccta tcaaattcga taacaatgag ttgggtgtta
     5821 ttacagcatc aatatcattg aaaatattgg tgctcagagc aaccggagat gtatagcggg
     5881 ttccgaaata agcagaaaac cataatccga cacaacttaa aaccaataat atggctaatg
     5941 gaatgcttgg gataataaat tgttttatag agacttttat atgagccttc atttactgtt
     6001 ttttgcttta aaaaattgtg agcattttca aaatgctgat tctgttttat tgaattgtgg
     6061 tacaaaaata atacaagtac cggtaaataa atcaccgata cttgtatttt gcataaattc
     6121 aatatttatt caaagttatt ttaaccctct tttctccaaa agggcattcg gatttggatc
     6181 ggccccacgg aaactgcggt ataatttcat tggatcttcg gagtctcctc tttcgagaat
     6241 atattttcgg aaagctgctg ctttttcagg gttgtaaatg tctcctgttt ctttgaaagc
     6301 cctgaaagca tccgcatcga gcactgcagc ccaggtgtaa ctatagtatc cggcattgta
     6361 accacccgtg aatatgtgat tgaagtaagt gctgcgatac cgtacaataa tttgtggaat
     6421 catacccatt ttgtcgagcg aggctttttc gaaagctgcc acgtcaaagt tgacagtgtc
     6481 tttaatcata tggtaatcca tatccatgat tgaggcagat agaagctctg tgttaatgaa
     6541 gccctgattg aaagttcctg ccaattgaat tttatccatt aattctttag gcattatttc
     6601 tcctgttttg taatgtttag cgtacgtttt cattacttcc ggttcccagc accagttttc
     6661 catgacttgc gatggtagtt ctacaaagtc gcgagccaca tcggtgcctg acaaacttgg
     6721 ataagtacac tgagtgagca aaccgtgaag tgcatgtcca aattcgtgga agagtgtctc
     6781 cacttcgtcc atggttagta acgaaggctt gtcggccgtt ggtttggtga aatttcctac
     6841 gttacagata ataggacggt aatttttccc gtctttttta tattggggcg tgatgttttc
     6901 catccatgca ccggcacgtt ttcctgcgcg tgggaaataa tcggtgtaca aaactccaat
     6961 aaatgaacca tctgcattcg ttacttcaaa aacctcaaca tctttgtggt aaaccggcat
     7021 tccttccagt tttttgaatt tcaggccata aagttttgtt gctaaatcaa aaacaccctg
     7081 acgaacattt tccagtttga aatatggttt cagggcttct tcatccaaat cgtatttagc
     7141 cttgcgtagc ttttcggaat acaaccacca atcccatggc tccagttttt cgtcttttcc
     7201 ttcagcatcc attaattttt ggagttcggt agcctcttgt ttagctttgg caagggcagg
     7261 agtccaaacg gtttgcagaa aatcatacac cgttttagga gttttagcca tggtgtcgtc
     7321 aaggataaac gcagcagatg tctcgaatcc aagcaattgt gccttttggg tgcgcaactt
     7381 catgatttta ttgataacag ctttgttgtc tttgtcattg tcgtggtttg cacgggtaga
     7441 gtaggccaac aataattcct tccttaattc gcggttttca ctgtattgaa gcaccggaat
     7501 aaaactcgct ttttgagtgg tgaataacca ttcaccgttt ttgccagctt cttttgccgc
     7561 ttccgcggca gcctgacgca cgctttcggg caatccatcc aaatcagctt ctttggtgac
     7621 aaatttcttg tatgagtttg tctcgtccag tacgttttgt ccaaaagcca gttcggccag
     7681 tccaagctct ttatttattt cgcgaagttt tgctttttgt tcctcattaa gtgcggctcc
     7741 actgcggaca aattcgcgat gaattttctc cagtaaacgg atttgttcgg gagttaatcc
     7801 aagttttgtg cgtttatcgt acagcgtctt cacacgacga aaaagcttgc tgttcaggta
     7861 aatattgtcg ttgtgttccg ataggatagg ggagacctca ttagcaattt tagccatgcc
     7921 atcatttgtt tcggcagagt agaggttgaa aaaaacggaa gatactttct tcagcaaatc
     7981 accgctgtaa tccatggcgg caatggtatt tccaaaagtt gcagcatttt tgttatttgc
     8041 aatggcatta atttcagcct gatgctgttt gataccttct ttaaaagcag gcatataatg
     8101 ctcattttta attttgtcga aaggtggagc accgtatttg tttttatagg tttcgaaaaa
     8161 cggattattg gttttagcag atcccataag ggtaagtcca atcattagag ttaataaagt
     8221 ttttttcatt tgaaatcgca tttgtttgtg gcacatattt aatgcacaaa gataaaaaat
     8281 aagtttctga aaatgaataa ctatcaatta tttattcatt tcaaccacga gttttttgtc
     8341 tttttgaagt tgggcaatga gctcatcgat attttcaaat ttcttttcat ccctgatttt
     8401 ctttataaag ataatctcaa cgtcttga
//
LOCUS       DATDNM010000305         4250 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1427863, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000305 DATDNM010000000
VERSION     DATDNM010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4250
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1427863"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            237..308
                     /locus_tag="VI413_05130"
     tRNA            237..308
                     /locus_tag="VI413_05130"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:270..272,aa:Arg,seq:cct)
     gene            complement(359..718)
                     /locus_tag="VI413_05135"
     CDS             complement(359..718)
                     /locus_tag="VI413_05135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HEY6914040.1"
                     /translation="MKNIVMEKSFDFALRIIKSYKFLCAEKKEFILSKQLLRSGTAIG
                     ALIKEAEHAQSKADFINKMNIALKEANETEYWLELLYRSEYFDEKPYLSVVEDCRELI
                     RLLISIVKSSKGNNEKD"
     gene            complement(746..1411)
                     /locus_tag="VI413_05140"
     CDS             complement(746..1411)
                     /locus_tag="VI413_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018464880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6914041.1"
                     /translation="MIQAKNIHKSFGDLEVLKGVELNITKGEIVSIVGPSGAGKTTLL
                     QILGTLDKPNAGEVLVDNIDFSKLGEKELAAFRNKHIGFIFQFHQLLPEFTALENVMI
                     PALIARKDNKKTTQKAKEILAYLQLSDRMEHKPSELSGGEKQRVAVARALINDPALIL
                     ADEPSGSLDSKNRDELHKLLFDLRDKFGLTIVIVTHDKELAALSDRVIEMRDGLIQMT
                     VDK"
     gene            1539..2246
                     /locus_tag="VI413_05145"
     CDS             1539..2246
                     /locus_tag="VI413_05145"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HEY6914042.1"
                     /translation="MLSDPELGTIEFVRNERSKHIRVRILSNSLKVTLPPRSTENDAM
                     KFINSIRPKLIQKQSKLEKGLEKRNILIDENSRLQTLTFVVEAKPANRKNIYFALKSS
                     TLNIEFPVGTDCYAMETQQHFWNGISYFMRKEAKRLLPGRTKQLADKFGFTFADVKIQ
                     SSKTRWGSCSGVKSINLSLYLMLLPAHLIDYVILHELCHTREMNHGDRFWTWMDKVTD
                     GKSKELRKELKNYHMPQ"
     gene            2302..3627
                     /locus_tag="VI413_05150"
     CDS             2302..3627
                     /locus_tag="VI413_05150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018452450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008832 - dGTPase activity [Evidence IEA];
                     GO_process: GO:0006203 - dGTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HEY6914043.1"
                     /translation="MNWNQLLSTKRFGQEAYHAVRDDDRSEFQRDYDRLIFSAPFRRL
                     QNKTQVFPLPGSVFVHNRLTHSLEVACVGRSLGVTVAHKLKSKKHIETPYLEEIGSII
                     SAACLAHDLGNPPFGHSGEKAIATYFSEGGGQHLKTQMTEEEWKDIICFEGNANAFRL
                     LTHQFNGRRPGGFVLTYSTLASIVKYPYASIYSDPRKQKFGFFDSEKADFEKIAAELG
                     IPSSPDNPNRFARHPLVYLVEAADDICYQIMDIEDAHKLRILTSEETKNLFLGFFSDE
                     RKARRMETMNMVTDVNEQIAYLRSSVIGQLIEECSTVFAENEEDILKGTFTSSLIKNL
                     PQHSAEAYKNCEKMAFAKIYRSAEVLDIELAGYKIILTLLEHLVTAVLSPEKAYSKQL
                     LMRIPEQYETNNPTVYGKIMAVLDYISGMTDIYALDLYRKITGMSIPTL"
     gene            3661..4005
                     /locus_tag="VI413_05155"
     CDS             3661..4005
                     /locus_tag="VI413_05155"
                     /inference="COORDINATES: protein motif:HMM:NF037081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914044.1"
                     /translation="MKKDNENNEKPEVPLWLMTEVMSLTDIIDIIIDNSAYTPKVVKE
                     AMMEFQKVLYDKLKEGYSVKSSFGTFYPHFGELDAITGEREFSVEFVPTKEMLRKIEA
                     RKMQRLDNISLN"
BASE COUNT         1293 a          863 c          855 g         1239 t
ORIGIN      
        1 ccaaaaacat aatatacagg gtaatacaac agatcggata tcagatacat aaccctcagc
       61 gggagtaaag tgataatcca gaaaaatgca tagatcaaat taaacatata atcccgacta
      121 taaaaaatat aacgtgaaag aataataatt cagagaaaca ggcaagttgt aaaagttaag
      181 ccactattcg tttttatttc tcatcaaaaa aatgtatttt tgtgccacca aaaagcggtc
      241 ctgtagttca atggatagaa caagtgtttc ctaaacacta gatccgggtt cgattcccgg
      301 cgggactaca attttcaatt gacagttgac aatggaaaat tgacagttga ttctgaaatt
      361 aatctttttc attattccct tttgaagact ttacgatgct tattagtagt ctgattaatt
      421 ctctacaatc ttcaactact gaaagataag gcttctcgtc aaaatactca ctccggtata
      481 ataactctaa ccaatactct gtttcatttg cttctttaag ggcaatattc attttgttga
      541 taaaatcagc ttttgattga gcgtgttcag cttcttttat taatgctcca attgcagtac
      601 cgcttcttag gagttgcttt gataaaataa attctttctt ttcggcacaa agaaacttat
      661 acgattttat tattctcaat gcaaaatcga aggatttttc cattactata tttttcatgt
      721 ttatcctttt tttaattgtc aactgtcact tgtcaactgt catttgaata agtccgtccc
      781 gcatttctat caccctgtcc gacaacgctg ccaactcttt atcgtgtgtt acaatcacaa
      841 ttgtaaggcc gaatttatcg cgcaaatcaa aaagcagttt gtgaagttcg tcgcggttct
      901 ttgagtcaag gcttcccgaa ggctcatcgg ccagaatcag tgccggatca ttaatcaaag
      961 cacgggctac tgcaacacgc tgtttttctc cgcccgaaag ttcacttggt ttatgttcca
     1021 tgcggtccga aagctgcaaa tacgccagta tttctttggc tttctgggta gtttttttgt
     1081 tgtctttccg tgcaattaat gcaggaatca tcacgttttc gagtgcagta aactccggca
     1141 acaattggtg gaactgaaaa ataaaaccga tatgtttatt ccggaatgcc gccagttctt
     1201 tttcgccgag tttgctgaag tcgatattgt caaccagcac ttcgcctgca ttcggtttgt
     1261 cgagtgtccc cagaatctgc aacaaagtcg tttttccggc accgcttggc cccacgatgg
     1321 agacaatttc acctttggta atattcagtt caacgccttt gagaacctcc aaatcgccga
     1381 aactcttgtg tatattttta gcttgaatca ttttttcagt gttttccgaa attttgtgca
     1441 aagttattcg tttcaggcaa taaactctta ttttttgctc agaaaaaatg tacctttgtg
     1501 ctgttatcag gtatatttaa ttcatttttc aatcaaaaat gttatcagac ccggagttag
     1561 gaaccattga atttgtccgc aacgagcggt cgaagcacat tcgtgtgcgg attctaagca
     1621 acagcttaaa agtaacttta ccaccccgat cgaccgagaa tgatgcgatg aaattcatta
     1681 attccattcg ccccaaatta atccagaaac aatcaaagct cgaaaaaggc cttgagaagc
     1741 ggaatatcct gattgacgaa aactcccgtt tacagactct tacttttgtt gttgaagcaa
     1801 aaccggccaa ccggaaaaac atctattttg ccttaaaaag cagcacatta aatattgaat
     1861 tccctgttgg aacggattgc tatgcaatgg aaacccaaca gcatttttgg aacggaatca
     1921 gttattttat gcgcaaagaa gccaaacggc ttttaccggg ccgaacgaaa caacttgccg
     1981 ataaatttgg ttttacattc gcagacgtca aaattcaatc gagcaaaaca cgctggggaa
     2041 gttgctcggg tgtgaagagc attaatctct cgctttacct gatgttgctt ccggctcatt
     2101 tgattgatta cgtgattctt catgaacttt gccacacccg tgaaatgaac catggcgacc
     2161 ggttttggac ctggatggac aaagtaaccg acggaaaaag caaggaattg cggaaggaac
     2221 tgaagaatta tcatatgcca caataaaaat cagaacaact tttccaaagt ttgtactttg
     2281 gaaaagttta gaaaataaag aatgaactgg aaccaacttt tatccaccaa acgcttcgga
     2341 caagaggctt accacgctgt gcgagatgac gaccgcagcg aatttcagcg cgattacgac
     2401 cggctgattt tttctgcacc atttcgccgg cttcaaaata aaacacaggt ttttcctctc
     2461 cccggaagtg tatttgtgca caaccggctt acgcacagcc tggaagtggc ttgcgttgga
     2521 cgttcgctgg gagtgaccgt agctcacaaa ctgaaatcga agaaacatat cgaaactcct
     2581 tatcttgaag aaatcgggtc catcatttcg gctgcctgtt tggcgcacga tctagggaat
     2641 ccgccttttg gacattcggg tgaaaaagcc attgctacct atttttcgga aggaggtgga
     2701 cagcatctga aaactcaaat gaccgaagaa gaatggaaag acatcatttg ttttgaaggg
     2761 aatgccaatg ctttccggtt gctgacccat cagttcaatg gccgtcgtcc cggaggtttt
     2821 gtactcacat acagtacact tgcatccatt gtaaaatatc cttacgcatc gatttattcc
     2881 gacccgagaa agcaaaagtt cggttttttt gattccgaaa aagctgattt tgagaagata
     2941 gctgccgaac tgggcattcc aagctcgccc gacaatccga atcgttttgc acggcatcca
     3001 ttggtttacc tggtggaagc agccgacgat atttgctatc agattatgga tattgaagat
     3061 gctcataaac tccgtattct tacttcggaa gaaacaaaaa acctgtttct tggatttttc
     3121 agcgatgagc ggaaagcgcg ccgaatggaa acaatgaaca tggtgacgga tgtgaatgag
     3181 caaattgcgt atctgcgctc atcagttatc gggcagttga ttgaagagtg ttcaaccgtc
     3241 tttgccgaaa atgaggaaga tattctgaag ggcactttta cttcgtcgct tattaaaaat
     3301 ttaccgcaac attcggctga agcctataaa aattgtgaaa aaatggcttt tgccaaaata
     3361 tatcgctcgg ctgaagtgtt agatatagaa ctagcgggtt ataagattat tcttacgctg
     3421 ctggaacatt tggttacagc ggtgttaagt cccgaaaaag cttattcgaa acagctttta
     3481 atgcgaattc cggagcaata cgaaaccaac aacccgaccg tttacggaaa aataatggct
     3541 gtgttggatt atatttcagg catgacagat atttacgcac ttgatttata ccgaaaaatt
     3601 accggaatga gtatcccgac tttatgaaac tggatgttaa actaattaaa tcgcagtatt
     3661 atgaaaaagg acaacgaaaa caacgaaaag ccggaagtac cactatggct aatgaccgaa
     3721 gtaatgtccc tgactgatat tatagatata atcattgaca attcggctta cactcccaaa
     3781 gtagtgaaag aggctatgat ggaatttcaa aaggtattgt acgacaaact aaaagagggc
     3841 tattctgtaa aatcatcgtt cggcacgttc tatccgcact ttggcgaatt ggacgcaatt
     3901 acgggcgaaa gagagttctc tgtggagttt gtaccaacaa aagaaatgct tcggaaaata
     3961 gaagcaagaa aaatgcaacg gttggataat atttcgctaa actaagcatt tcccaaacaa
     4021 ggattatttt attttacata aaatgattat aaacaacaaa aggttactct ctcgggtaac
     4081 cttttgttgt ttataatatt acatgaataa gttttaggga gcagctcgtt tgtttataaa
     4141 taagaattcc cggcatccag ggatgaatgg ctcaacgagg ggatgaacct ccagtcatcc
     4201 ttggatgctc ggctcttcga ggggatgaat ggtcagtcat ccttggatga
//
LOCUS       DATDNM010000306         2996 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1214451, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000306 DATDNM010000000
VERSION     DATDNM010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1214451"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..713
                     /locus_tag="VI413_05160"
     CDS             <1..713
                     /locus_tag="VI413_05160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914045.1"
                     /translation="QVPASIYVKPQASWHLSGGYFQNISENDWELGMEVYYKTLENQL
                     EFKNGIETTFANGMFEKDLLVGKGWTYGAEWKIRKNAGKLTGWLSYNLARSYRQFDKI
                     NNGLVFLANNDRRHDISLIGMYELNNRWNFSAVFVYATGNRLNLPVSWFFIDGKYVLE
                     YGRYNAFEMPAYHRLDVSANHKLKTWHGIQSELNFSVYNIYNRANPFQVIFIPRSQSM
                     RMSYLLPIIPSVSWTFHL"
     gene            721..1575
                     /locus_tag="VI413_05165"
     CDS             721..1575
                     /locus_tag="VI413_05165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914046.1"
                     /translation="MNKTICYILFILSLISCKPDLNYEIRGYTQKIIVEGFIANGEFP
                     SVYLSLNIPLSKTVDTVTILENVIRTAKVTISDGETTEILTSRWDKKHFPPYVYRGTE
                     LKGVEGKTYYLTVDYGGYTLHSQTTIPYATNILKFNMIPVAGNDSMRLLTMTFDIDAA
                     KKNAYRVFTKKMKDGFFTQTPIVYNSEFALSGTNTFNISPKPDTKDPSSSEGSYFAIG
                     DTVQVKLCTIDSVATQFFKALTIFSASGIGSNFFIGEKDALKSNISSPGFGIWYGNGT
                     NSYQVVIQ"
     gene            complement(1627..2949)
                     /locus_tag="VI413_05170"
     CDS             complement(1627..2949)
                     /locus_tag="VI413_05170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914047.1"
                     /translation="MKKNIFLFASAFTLLFALNSCKKDVLDLDKNLKFSTQTVEQQKQ
                     TIEQNGIDFINKVDAMQNTKAMIALQAFSNNTGGPAFVKSLAQLRANLSRNDVKALET
                     FNTQMRAAAIGEDFWGTWTWNPGIEDFDYVAGPANAATILFPATENSLTNNGELKITY
                     VESSVVAPDSDPVEYMPKNISLVLKVSGSVAMTADFSGSYKADGTPTKVTQTLVIEKY
                     NWKLEFSNDDKDVSAKYAFNYDTEALVKFEIGAAGSFTATNIENSMNAGNPENVFSSG
                     AMYFQVMNIAFLGGFDDFKGFANTMKAIESGDDRTTTQKEADALNKYLKMYGYFVKEK
                     KKFADVEFYTADVDVPDYSKSTLVYTTTSSNYVEPTVDYDYYDIKSIYNSGTGSYDYT
                     YNYYAYGTKAGYELQPRMVLSDGSKVAVEDFFASGFEDLIKKIESYQE"
BASE COUNT          937 a          584 c          537 g          938 t
ORIGIN      
        1 tgcaggttcc ggcatctatc tacgtaaaac ctcaggcatc ctggcattta tccggtggat
       61 attttcaaaa catttctgaa aatgactggg aactgggtat ggaagtttac tacaaaaccc
      121 ttgaaaatca attggaattc aaaaacggaa ttgaaacaac tttcgcaaat ggcatgtttg
      181 agaaagattt attggttgga aaaggctgga cttatggcgc agaatggaaa attcgtaaaa
      241 atgcaggcaa actaaccggt tggctgtcgt ataatctggc ccggagctac cgacagttcg
      301 ataaaatcaa taatggatta gtgtttctgg ctaataacga cagacgacat gatatttcgt
      361 tgatcggcat gtatgagctg aataaccggt ggaacttttc tgcagtattt gtatatgcta
      421 ccggaaacag actaaatcta cccgttagct ggttctttat cgatggtaaa tacgtgctgg
      481 aatatggccg ttataatgca tttgaaatgc cggcttatca tcgcctggac gtttcggcaa
      541 atcataagct gaaaacatgg catggcattc aatcagagct gaacttttct gtttataaca
      601 tctataaccg agctaacccg tttcaggtta ttttcatccc ccggtcgcaa agtatgagaa
      661 tgtcttattt attgccaatt attccttctg tatcatggac ttttcattta tgagtttcaa
      721 atgaataaaa caatttgtta catattattt atcctcagcc tcatttcctg taaaccggat
      781 ctgaattatg agattcgtgg ctatacacaa aaaattattg tcgaaggctt tattgccaat
      841 ggtgaattcc cgagtgtgta tctgtcgcta aatataccgc tttcaaaaac agttgacaca
      901 gtaactattc tggaaaatgt aataagaacc gccaaagtaa ctatttcgga tggtgaaaca
      961 acagagattc taacctcgcg ctgggataaa aagcattttc caccttatgt gtatcgtggc
     1021 acagaactga aaggagttga aggtaaaact tattacctga cagtggatta tggcggctac
     1081 acactacatt cccaaaccac cattccatac gcaaccaata tcctgaaatt caatatgata
     1141 cctgtagcag gaaacgattc gatgcggctg ctaaccatga catttgatat cgacgcggca
     1201 aagaaaaacg cttacagggt atttacaaag aaaatgaaag atggattttt tactcaaact
     1261 ccgatcgttt acaattcgga gtttgcactg tcggggacaa atacattcaa tattagtcca
     1321 aaaccggata ccaaagaccc cagttcgtcg gaaggtagtt attttgcaat aggtgacaca
     1381 gttcaggtta aactctgtac gattgacagt gttgcaactc aattttttaa agcattgact
     1441 attttctcgg cttcaggcat tggctctaac ttttttatcg gagaaaaaga tgccttaaaa
     1501 tcaaatatca gttctcccgg atttgggata tggtatggaa acgggacaaa ttcgtatcag
     1561 gtagttattc aataaaaaag gagaagtaca aaacttctcc tttttaaatt cgtcgaaaaa
     1621 caaccgctat tcctgataac tctcaatctt cttgattaaa tcttcaaatc cactggcaaa
     1681 gaaatcttca acagctactt tggaaccatc tgacaatacc atacgtggtt gcagctcgta
     1741 accggctttt gttccatatg cgtagtagtt ataagtgtaa tcataagatc ctgtaccaga
     1801 attataaata gattttatat catagtaatc ataatctaca gtaggttcca cataattcga
     1861 actggttgta gtataaacta aagttgattt agaataatca ggaacatcaa cgtcagccgt
     1921 ataaaactcc acatcagcaa atttcttttt ctctttcaca aaatacccat acattttaag
     1981 atacttgtta agtgcatctg cttctttttg agtagttgtt ctatcgtctc cggactcaat
     2041 tgccttcatt gtgtttgcaa atcctttaaa gtcatcaaaa ccaccaagga aagcaatatt
     2101 cattacctga aaatacattg cacctgaact aaatacattt tcaggattac cagcattcat
     2161 gctgttttca atgttggtgg cagtgaagct tccggcagca ccaatttcaa attttaccaa
     2221 cgcctcggta tcgtaattga aggcatattt agctgaaaca tccttatcgt catttgaaaa
     2281 ttctaatttc cagttatact tttcaattac aagtgtttga gttacctttg tcggagttcc
     2341 atcggcttta taacttcccg agaaatctgc agtcattgca actgaaccgc tcactttcaa
     2401 tacaagagaa atattctttg gcatatattc taccggatca gaatccggag ctacaacact
     2461 tgactccaca taagtaatct ttaattcacc attattagtt aacgaatttt ctgtagccgg
     2521 gaaaagaatt gtagcagcat tggcgggtcc tgcaacatag tcaaaatcct caatacctgg
     2581 attccaggtc catgtacccc agaaatcttc acctattgca gctgctctca tttgagtatt
     2641 aaatgtttca agcgctttta catcatttct ggataaatta gctcttaatt gtgcaagtga
     2701 tttcacaaaa gcagggccac cggtattatt tgaaaatgcc tgtaaggcaa tcattgcttt
     2761 cgtgttctgc atggcatcaa ctttattgat aaaatcaatg ccgttttgct caatggtttg
     2821 tttctgttgt tcgaccgtct gtgtggaaaa tttcagattt ttatccaaat ccaaaacatc
     2881 ttttttacag gaatttaatg caaacaataa tgtaaatgca ctggcaaata gaaaaatgtt
     2941 ctttttcata gcgataattt tttaatgtta tagttttgta gaaaatgttt caacaa
//
LOCUS       DATDNM010000307         4844 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1961872, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000307 DATDNM010000000
VERSION     DATDNM010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4844
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1961872"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1543)
                     /locus_tag="VI413_05175"
     CDS             complement(<1..1543)
                     /locus_tag="VI413_05175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914048.1"
                     /translation="MATALFLLTIVAISKAGTGNWTSATTGGSIAYTTTESSTPVKDY
                     AGNYLTVVYLENLGFNKFGKNSNATDVSWLLSKGYRVIELNYAKNTKAVTPTINADII
                     SINDAIAAGSFCGLTNCSKYRSYVLCEGYRIARDVSYFKDDPAIYNYPGTYTVGDSLY
                     MDIIYPANTSAAVPVVLSFSYSNSWGGGETNKHQRLNLGNTLAGFNDSFLEGAPANGI
                     AWAIADHPKYCDWGQGKPVGGANKTYASYETNPDAAQKVKSAIRTLRALGTGLGLSGK
                     IGIYGFSRGSTAGSMAVGDRSVANFENAGLHIGISDDVQVAALGSGVFDYTQIYNTAE
                     SDIGNLTTNCPLAWGALASNTALWESEGSSYLAQTSASAPVIFFYNTTDASYYQHQIT
                     QFKAKLDGLGVATATVINYGTGHAVPQTNAPLTTIYNFFNQYLTPPSVTTGINTSTQN
                     VDMPLMLSPNPATNSINLKFDQPNAGKVQIELCNQSGMLVCKTEKQYDHIGLQNETIY
                     LDKLNL"
     gene            1843..3828
                     /locus_tag="VI413_05180"
     CDS             1843..3828
                     /locus_tag="VI413_05180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007213480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NPCBM/NEW2 domain-containing protein"
                     /protein_id="HEY6914049.1"
                     /translation="MKKTLILSLCLLCMTAMGQKSKSTTISELWLDEMDVTQIETGWS
                     VTQANKSIDRNSLTVDGKKYERGIGTHATSKVLLNVNGTAQKFFASVGVDDEVKSDAT
                     IEFYVLCDRKVLFRSGVMKKGDAAKEINVNLKGVQQLALLVTDANDGINFDHADWLNA
                     RITYAGNKPSIAGVASQRPYILTPKPTASPRINGARITGASPAKPFLYTIAATGKRPM
                     TFSAEGLPQGLALDKETGIISGKADLEGEYSVKVTARNEAGTATRTMKIVIGKNKLAL
                     TPPMGWNSWNCWGLSVSEEKVKASADAMVSSGLINHGWTYMNIDDGWEAPERAANGDI
                     VCNEKFPDMKRLSDYVHAKGLKMGIYSSPGRLTCGGYLGSLNHEQQDAEMYAKWGIDY
                     LKYDWCSYGEEFDKTDKSHAEYMKPYITMKNALAAQNRDIVHSLCQYGMNNVWEWGGE
                     TGQLWRTTGDITDTWQSMSGIGFSQTQNTRYAKPGNWNDPDMLVVGKVGWGPSLHPSR
                     LTPDEQYTHISLWALLSSPLLIGGDMSQMDEFTLNLLTNDEVIDVNQDPLGKQAVCVS
                     KQNGKEVWVKDLEDGSKAVGLFNRGDDTNVADLFSWAQKGRVSTTMKVNWSELNLTGK
                     QQVRNVWMQKNVAVLDQAFETAVPLHGVVLVKISPVK"
     gene            4002..4646
                     /locus_tag="VI413_05185"
     CDS             4002..4646
                     /locus_tag="VI413_05185"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEY6914050.1"
                     /translation="MKQKIKIAVIGGTGKSGKYLVEQLVDQGFQLKMLIRNPANFQAT
                     GSLIEVIEGNVADYNSVYSLIEGCHAVISTLGLGIPASEPTIFSRSTSNVIKAMAECN
                     VQRYIVTTGLNVDTPFDKKSGKTSFGTDWMKKTYPVSTADKQLEYEILAGSTVDWTLV
                     RLPMIELTERRYPVDVSLEDCAGDKISATDLAHFLIEQLSSEAFVRKSPFLYNV"
     gene            complement(4676..>4844)
                     /locus_tag="VI413_05190"
     CDS             complement(4676..>4844)
                     /locus_tag="VI413_05190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4130 domain-containing protein"
                     /protein_id="HEY6914051.1"
                     /translation="PGGKLDEKLMAEDEKLYQELWKGYFKSMTIKERINLKLQRQHMP
                     KRYWKYLTEKQ"
BASE COUNT         1400 a          959 c         1111 g         1374 t
ORIGIN      
        1 ggaggtttag cttgtcaagg tatattgttt cattttggag cccgatatga tcatattgtt
       61 tctccgtttt gcataccagc attccggact ggttgcacaa ttcaatttgt actttgcctg
      121 catttggttg gtcgaatttc agatttattg aattagtggc aggattagga gatagcataa
      181 gcggcatatc aacattctgc gtcgacgtat ttattcctgt tgttacactt ggtggagtca
      241 ggtactgatt aaagaaattg taaatagtag ttagcggtgc attggtttga ggaacggcgt
      301 gccctgttcc gtaattaatt accgttgccg ttgcaacacc caatccatcc agtttggctt
      361 tgaattgtgt aatctgatgt tgataataag atgcatcggt agtgttgtag aagaaaatta
      421 cgggtgccga tgctgacgtt tgagccagat aagacgaacc ctccgattcc cacaaagctg
      481 tattacttgc aagggctccc caggctaacg ggcaattggt tgtcaggttg ccaatatcac
      541 tttctgcggt attatagatc tgggtataat cgaaaacccc tgacccaagc gcagctacct
      601 gaacatcgtc ggaaatgcca atatgtaaac cggcattttc aaagtttgca acactgcggt
      661 cacccacggc cattgaaccg gcagtcgaac ctcttgaaaa tccatagatg cctattttgc
      721 ccgaaagccc taatcctgta ccaagcgctc gcagggtgcg aattgccgat ttgacttttt
      781 gggcagcatc tggatttgtt tcgtatgatg cgtaagtttt attagctcca ccaacaggtt
      841 ttccttgccc ccaatcgcag tacttgggat ggtcggcaat tgcccaggct atgccattgg
      901 caggtgcacc ttccaaaaat gaatcgttaa aaccggctaa agtatttcca aggttcagtc
      961 gttgatgttt atttgtttcg ccgcctcccc aactgttgct atacgaaaat gacaagacta
     1021 ccgggacagc tgccgatgta tttgcaggat aaataatgtc catataaaga gaatccccta
     1081 cagtgtatgt gcccggataa ttataaatag caggatcatc tttgaaataa gaaacatccc
     1141 gcgcaattct gtatccttcg cacagaacat aagacctgta ttttgaacag ttggtcagtc
     1201 cgcaaaacga tccagcagca atggcatcat tgattgagat aatatctgca ttgattgtcg
     1261 gagtgacggc tttcgtgttt ttggcataat tcagttcgat aacccgatac cccttggaaa
     1321 gtaaccaact cacatctgtg gcattactgt ttttgccgaa tttgttgaat cccagattct
     1381 caagatagac aacggttagg taattaccag cgtaatcttt aacaggagtt gatgattcgg
     1441 tcgttgtgta tgcaatactt ccaccggttg tagcactggt ccagttacct gttccagcct
     1501 tagaaattgc aactatggtt agcaggaata gagctgttgc cattgatcgc aaggaaattg
     1561 aacgaaaaag tgagtttaaa agcgtgattt ttttcatgaa ctccaatata tttattaaag
     1621 ggtatgacga agttcaaaag taattgtaat caaaaaaata aatatagatt ttttgacgga
     1681 agatgtgtac gatttgatat tctttgtttt tttatgcaga aaataaccaa taaggagagc
     1741 gtttttatct tatttacata atttggcacg ttttatgttc aataagcaca ttttcgcaaa
     1801 ttatccagcg aaagtacaaa tctaattaat tttaatttat ttatgaaaaa aacactgatt
     1861 ttatcgctgt gcttgctgtg tatgaccgca atgggacaga aaagcaagtc gacaactatt
     1921 tcggagctat ggcttgacga aatggatgta acccaaattg aaaccggttg gagtgtcact
     1981 caggccaaca aaagtatcga tcgtaattcc ctcacagtcg atggtaaaaa gtacgaaaga
     2041 ggtatcggta cacacgccac cagcaaagtg cttctgaacg tgaatggaac agcccaaaag
     2101 tttttcgcat cagtgggtgt cgacgatgaa gtgaaatcgg atgctaccat tgagttttat
     2161 gtgttgtgcg accgcaaagt gttgtttcgc agtggtgtta tgaaaaaagg cgacgctgct
     2221 aaagaaatca atgtaaacct caaaggcgta cagcaactcg ccttgttggt aaccgatgcc
     2281 aacgatggta ttaatttcga ccacgccgac tggcttaacg cccgcattac atacgctgga
     2341 aataaacctt caattgcagg tgttgcttca caacgtccgt atattcttac tcccaaacca
     2401 actgcttcgc cgcggattaa cggagcgcgt attacaggtg caagtcccgc caaaccattt
     2461 ctctatacta ttgcagcaac cggaaaacgc cctatgactt tcagtgcaga aggcctgccc
     2521 cagggactcg cgctggataa agaaaccggg ataatttcag gaaaagcaga cctggaaggt
     2581 gaatactctg taaaggtcac tgcccgcaat gaggccggaa cagccacacg caccatgaaa
     2641 atagtaattg gcaaaaacaa actggcactt acaccaccaa tgggctggaa cagttggaac
     2701 tgttggggat tatcggttag tgaagaaaag gtaaaagctt cggccgacgc gatggtatcg
     2761 agtgggttaa tcaaccacgg ctggacatat atgaacattg atgatggttg ggaagctccg
     2821 gaacgtgctg ccaatggcga tatcgtgtgc aatgaaaaat ttcccgatat gaaacgattg
     2881 agcgattatg tgcatgccaa aggattaaag atgggtattt attcttcacc gggccggctt
     2941 acttgtggtg gctacctggg aagcctgaac cacgaacaac aggatgctga gatgtacgct
     3001 aaatggggaa tcgattacct gaaatacgat tggtgttcat atggtgagga atttgataag
     3061 acggataaat cgcatgctga atatatgaaa ccatacatca ccatgaaaaa tgcccttgct
     3121 gcgcaaaacc gcgatatcgt acacagcctt tgccagtacg gtatgaataa cgtatgggag
     3181 tggggaggcg agacaggaca actctggcgt actaccggcg acattaccga tacgtggcaa
     3241 agtatgtccg gcattggatt ttcccaaacg caaaacaccc gatatgccaa acccggcaac
     3301 tggaacgacc ccgatatgct ggttgtagga aaagtgggtt gggggccatc gcttcatcca
     3361 agccgcctga ctccggatga acaatatact cacatcagtt tatgggcatt gctgtcttcg
     3421 ccattgctta tcggtggcga tatgagccag atggacgaat ttacgctgaa cctgcttaca
     3481 aatgatgaag tgattgatgt taaccaggat cctctgggaa aacaggctgt ctgtgtttcg
     3541 aaacaaaacg gaaaagaagt gtgggtgaaa gacctggaag atggttcgaa agcggtagga
     3601 ttgttcaatc ggggagatga tacaaacgtt gcagatttat tcagctgggc acaaaaagga
     3661 cgtgtatcaa ccacaatgaa agtcaattgg tctgaattaa atctcaccgg aaaacagcag
     3721 gtccgcaatg tgtggatgca aaaaaatgta gctgtcctgg atcaggcatt cgaaacggcc
     3781 gttcctcttc atggagttgt tttggtgaaa ataagtccgg ttaaataact tggttatcag
     3841 cagaatgttt actatttttg tggcattaaa ctctctttat aaaatattga tttcatcgcg
     3901 ggcaaaagtc tgatttcttt tgttagtccg atttattcga agtttttcta tatgacgaac
     3961 ttcgaacatt caaattatta ttaaatttta taaagatcaa tatgaaacaa aaaattaaaa
     4021 tcgctgtgat aggcggtact ggtaagtcgg ggaaatacct tgttgagcaa cttgtggatc
     4081 agggttttca attaaaaatg cttattagaa accctgcgaa ttttcaggca acgggttctc
     4141 tgattgaagt gattgaagga aatgtggcag attacaattc ggtttattcg ttgatcgaag
     4201 gttgccatgc tgttatcagc acgttaggtt taggtattcc tgccagtgaa ccaacaatct
     4261 ttagccggtc gacttccaat gtcattaaag ccatggctga atgcaatgtg cagcgttaca
     4321 ttgtaacaac cggcttaaat gtagatacgc cttttgataa aaaatcgggc aaaacttctt
     4381 ttggaacgga ttggatgaaa aaaacatatc ctgtttcaac ggctgataag caattggaat
     4441 acgaaatttt agctggcagt actgttgatt ggaccctcgt aaggcttcct atgatagaac
     4501 tgacagaaag aagatatccg gttgatgtaa gtttggaaga ctgtgcaggt gacaaaatta
     4561 gcgcaaccga tttggcacat tttcttatag agcagctttc ttcagaagca tttgttcgaa
     4621 aatctccttt tttgtataac gtataaaatt attgacagtg agcttcgaaa gaggctcact
     4681 gtttttctgt caggtatttc cagtatcgtt tgggcatgtg ttgccgctgg agtttcaggt
     4741 tgatgcgttc ttttatggtc attgatttga aatacccttt ccacaattcc tgataaagtt
     4801 tttcgtcttc cgccatcagt ttttcgtcca gtttgcctcc ggga
//
LOCUS       DATDNM010000308         2066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1533548, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000308 DATDNM010000000
VERSION     DATDNM010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1533548"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            26..712
                     /locus_tag="VI413_05195"
     CDS             26..712
                     /locus_tag="VI413_05195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008144833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5020 family protein"
                     /protein_id="HEY6914052.1"
                     /translation="MKKNAVLLFFLLPMALMAQNLQVHYDFGKDRNYVTTTLEMFKPD
                     KWGNTFFFVDFDYNMGSEKHPSAAYMEIARCLKFWNGPLSLQVEYNGGFGTFPLGTGN
                     GAFPINNAYLIGLDYGLNNADFSKTLNLKALFKHIAGKQESAQFTAVWGLHFLKRKIS
                     FTGFADLWAEKNTFNADGITHPVFLTEPQLWYNFNEHLSAGSEVEIATNFAGVEGFKV
                     CPTLAVKWNF"
     gene            complement(851..>2066)
                     /locus_tag="VI413_05200"
     CDS             complement(851..>2066)
                     /locus_tag="VI413_05200"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY6914053.1"
                     /translation="YSALNGEIKIAVISDPHLMAQSLLVKDGSAFQAYLAKDPKLLEF
                     SSTIFEATIQKIITQKPDLVLISGDLTKDGEMISHETVARMLRKLTLNGIKVVVTIGN
                     HDVNNPESYKYIDDKTVLLPNIKADKIPQIYANFGFRDAIAKDSSSLSFVSEPIKDLW
                     ILSIDANKYDQNLTTNDWSGVIKPGTITWIKEQLAAAQLKGKTVIGMMHHGLVEHYTG
                     EQQIDPGYVVDNWESISDELIDAGLKIIFTGHYHATDITKRTHGDKFVFDVETGSLVS
                     YPCTYRMLTINGNNFAFEPQTTTNLLGPDFDNIAKIFQATHLDGYFQYVLANMYGVPE
                     PYAGMFAPYFENGAMAHFAGDETPTSEVLSHIGAVQSLSTQLGIVLGSLWTDINTPDN
                     TVTINMATGAIE"
BASE COUNT          598 a          377 c          415 g          676 t
ORIGIN      
        1 ttaatactaa aaaatgtaca acgtaatgaa aaaaaatgca gttcttttat tctttttgtt
       61 gccaatggct ttgatggcgc aaaaccttca ggttcactac gactttggta aagatcgtaa
      121 ttatgtaacc acaacactgg aaatgtttaa accggacaaa tggggaaata cattcttctt
      181 tgttgatttc gattacaata tgggaagcga gaagcatcca tctgctgcct atatggaaat
      241 tgcccgttgt ttgaaattct ggaatggacc tttgagtctg caagttgaat ataatggtgg
      301 gtttggcaca tttcctctag gcactggaaa tggcgcattc ccaatcaata atgcttactt
      361 aatagggctt gattatggtt tgaataatgc tgatttttcc aaaacactta atcttaaagc
      421 actgttcaaa catattgctg gaaaacaaga atcagctcaa tttactgccg tttggggatt
      481 acatttcttg aaaagaaaaa ttagttttac cggttttgct gatctttggg ctgaaaagaa
      541 tacatttaat gcagatggca taacacatcc ggttttctta acggagcctc aactttggta
      601 taacttcaac gaacatttat cggctggtag cgaagtcgag attgcaacaa attttgcagg
      661 agtagaaggg tttaaagtat gtcctactct ggctgtaaaa tggaatttct aatagtctag
      721 tttaaaaatc aaaataaaag ccgtatctgc atttaacgca gatgcggttt ttgcattaaa
      781 aaaagaccgg cttcttatta tgaaaagctg gtctttaaat aatcagtttt aaatgatttt
      841 tttgtgttac ttattcaatt gctcccgttg ccatattaat cgttacggtg ttgtcaggag
      901 tgttgatatc ggtccacaac gaacccaata ctatgcccaa ttgagttgat aatgactgca
      961 cagcgcctat gtggctcaat acttcagatg tcggcgtttc gtcgcccgca aagtgagcca
     1021 ttgcgccatt ttcaaaatag ggtgcaaaca tcccagcgta aggttcaggt acgccgtaca
     1081 tatttgcgag tacatattga aaataaccat cgaggtgagt tgcctggaaa attttagcaa
     1141 tattgtcgaa atcaggacca agcaaattgg tggtagtttg tggctcaaaa gcaaagttgt
     1201 tgccattaat ggttagcatt ctgtaggtgc atggataaga tacaagtgag cctgtttcaa
     1261 catcaaaaac aaatttgtca ccatgagttc ttttggtaat gtcagtggcg tgataatgtc
     1321 ctgtaaatat gatttttagc ccggcgtcta ttagctcgtc ggaaatgctt tcccagttgt
     1381 caaccacata acccgggtct atctgctgtt cgcctgtata atgttccact aatccatggt
     1441 gcatcattcc aatgactgtt tttcctttga gttgtgcagc agcgagttgc tctttaatcc
     1501 atgtgattgt tcctggttta atgacaccgc tccaatcgtt ggttgtcaga ttctggtcat
     1561 atttattggc atcgatactt aatatccata agtcttttat tggctcgctt acaaaactca
     1621 acgagctgga atctttggca atagcatctc taaaaccaaa gttggcataa atctgaggaa
     1681 tcttgtctgc ttttatattg ggtaataaaa cagttttatc gtcaatatat ttataagatt
     1741 ccggattgtt cacatcatga ttcccgatag tgactacaac tttaattcca ttcagagtga
     1801 gttttcgcaa catacgggcg acggtttcat ggctaatcat ttctccgtct tttgtaaggt
     1861 cgcctgaaat caataccaaa tcaggttttt gtgtaatgat tttttgtatg gttgcttcaa
     1921 aaatagtgga actaaattcc agcagtttgg gatcttttgc aagataggct tgaaaggctg
     1981 aaccatcttt tactaacagc gattgagcca ttaaatgtgg atcagaaata accgcaattt
     2041 tgatttcccc gtttaaagcg ctgtat
//
LOCUS       DATDNM010000309         3139 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1000213, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000309 DATDNM010000000
VERSION     DATDNM010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3139
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1000213"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2156)
                     /locus_tag="VI413_05205"
     CDS             complement(<1..2156)
                     /locus_tag="VI413_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005781094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP/pyruvate-binding domain-containing protein"
                     /protein_id="HEY6914054.1"
                     /translation="MMNTTSINKLYFKDTSFANLMTHRIYNVLLYASKYDAFVLEEDG
                     RIDELIFNEYTSLNLRYPPRFTLVSTEEEANALLHERKFELIISMPSGDSINPFEWAK
                     RVKKQFPDIPIVVLTPFSKSVSLRIANEDLSAIDYVFSWLGNSDILLAIIKLIEDRMN
                     VEEDVNSVGVQVILFVEDSIRWYSSIVPHLYKFVFKQSRSFMTEALNEHEQMLRMRGR
                     PKILLARSYEEGLSIWEKYKNNMLGVITDVSYMQNGQKNKKAGINLCSEIRKFDKHIP
                     LIVESTEEENHVAADSVKAAFLNKMSKTLLMELREKITDNFGFGDFVFINPETGNEEA
                     RVQNLRGLQESIFNVSDESLYYHVSRNNISRWLYSRAMFPLAEFLKNISVDNDVHSDL
                     RKVREIIFDAIVHYRKVKNRGVVALFQRDRFDQYSNFARIGDGSLGGKGRGLAFIDAM
                     IKRNESLENFANTQIVIPKTVVLCTDNFTEFMEQNKLYPIALSDISDEEILSHFLKAR
                     IPHHLIADLMVFLGAIASPIAVRSSSLLEDSHYQPFAGIYATYMVPISPNSRTHMLEK
                     VTEAIKAVYASVFYRDSKAYMTATKNIIDEEKMAIVLQEICGNAYEDRFYPSFSGVAR
                     SLNYYPIGAERPEDGIASIAMGLGKHIMDGGMSLRFSPAYPNNILQTSTLELALHETQ
                     TYFNALDLKQTHFVPQVDDGFNLLRIPVGEAEKDGTL"
     gene            2414..2851
                     /locus_tag="VI413_05210"
     CDS             2414..2851
                     /locus_tag="VI413_05210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6914055.1"
                     /translation="MARTSTYLNFSRNTEEAFNFYKSVFGGEFGGGGVARLGDFPPPE
                     GAPQLAEEDKNLIMHIELPIVGGHVLMGTDAPESMGFQVIQGNNIHMNLEPDTREETK
                     RLFEALSVGGKVTMELQDMFWGAYYGTLTDKFGIQWMFNCTGK"
     gene            2856..>3139
                     /locus_tag="VI413_05215"
     CDS             2856..>3139
                     /locus_tag="VI413_05215"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEY6914056.1"
                     /translation="MEKITITIQTTINAPIEKVWKCFTTPEDIVNWNNASDDWHTTSA
                     SNELYAGGKFNSRMEAKDGSFGFDFWGIYDEVINHEKLASTLGDGRKLET"
BASE COUNT          994 a          668 c          612 g          865 t
ORIGIN      
        1 agcgttccat ctttttctgc ctcacctacc ggaattcgta gcaaattaaa accatcatcc
       61 acttgaggca caaaatgagt ttgcttcaaa tccaacgcat tgaaataagt ttgcgtttcg
      121 tgtaaagcca gttcaagcgt actggtttgc aaaatattgt ttggatatgc cggcgaaaaa
      181 cgcaggctca ttccaccgtc cataatatgt ttccctagtc ccatggcaat actggcaatg
      241 ccatcttcag gcctttcggc tccaatagga taataattca gggaacgggc cacacccgag
      301 aatgagggat aaaagcgatc ttcgtacgca ttgccgcaaa tttcctgcaa cacaatggcc
      361 attttttcct cgtcaataat atttttggtg gcagtcatgt atgctttact atcgcgataa
      421 aacacagatg catacaccgc cttaatggct tcggtaacct tttcgagcat atgcgtccgg
      481 ctattgggac taatgggcac catgtaggta gcataaatgc ccgcaaatgg ctgataatgg
      541 gaatcttcga gcaaactgga cgaacggacg gcaataggcg aagcgatggc tcccaaaaac
      601 accattaaat cggcaatcag atggtgcgga atgcgggctt taaggaaatg ggaaagaatt
      661 tcttcatcgc tgatgtccga caaagctata ggatacagct tgttctgttc cataaattct
      721 gtgaaattat ccgtacacag cactaccgtt ttcggtatca caatctgcgt gttggcaaaa
      781 ttttcgagac tctcattccg tttaatcata gcatcgataa atgccaaacc acggccttta
      841 ccacctaacg agccatcacc aatgcgggca aaattagaat actggtcaaa cctgtcacgt
      901 tggaaaaggg ctactacacc gcggtttttc accttacgat aatgtacaat agcatcaaaa
      961 atgatttcgc gcacttttct caaatcacta tgaacatcgt tatcaacact aatatttttc
     1021 aaaaactccg ccagcggaaa catggcccgg gaatacaacc agcgggaaat attattgcgc
     1081 gaaacatgat aataaagcga ctcgtcgctc acattaaaaa tactttcctg caaaccgcgc
     1141 agattttgca cgcgcgcctc ttcgttgcca gtttccggat tgataaacac aaaatcccca
     1201 aagccaaaat tatcggtgat tttttcgcgt agctccatca gcagcgtttt cgacattttg
     1261 ttaaggaaag ctgctttaac cgaatcggca gctacatggt tttcttcttc ggttgattcc
     1321 acaatcaatg gaatatgttt atcgaacttc cggatttcgc tgcaaagatt aatacctgct
     1381 tttttatttt tctggccgtt ttgcatatag cttacatccg taatcacgcc cagcatattg
     1441 tttttgtatt tttcccagat tgacagccct tcttcataag aacgtgccaa cagaattttg
     1501 ggacgaccac gcatacgcaa catttgttcg tgctcattca atgcctcggt cataaacgaa
     1561 cggctctgtt taaacacgaa tttatataaa tggggcacaa tggacgaata ccaccgaatg
     1621 gaatcttcta caaataaaat aacctgtacg cccaccgaat tcacatcctc ctccacgttc
     1681 atcctgtctt caatcaactt aatgatggcc agtagaatat ccgaatttcc caaccagctg
     1741 aatacataat cgatagcact cagatcctcg ttggcaattc gcaatgaaac ggattttgaa
     1801 aaaggcgtga gtactacaat gggaatgtcc ggaaattgtt ttttgacacg ctttgcccat
     1861 tcaaatggat taatgctatc accgcttggc atagaaatga tcaactcaaa tttacgttca
     1921 tgaagcaggg cattagcttc ttcttcggtt gaaacaagtg tgaaacgtgg aggataacgc
     1981 agattcagcg acgtatattc attaaaaatc aactcatcaa tgcgcccatc ttcctccaac
     2041 acaaaagcat catacttact ggcatacaac agcacattgt aaatcctgtg cgtcatcaga
     2101 tttgcaaagg aggtgtcttt aaaataaagt ttattaatac tggttgtatt catcaattat
     2161 tgggcattga cagttcatga ttttgtaaaa aacatcagaa caaaagtaat aaaagagttg
     2221 aattttttga taagaaaacg aataaatatt taacgcgaca gaacacataa gaaaacaaaa
     2281 tgtatatctt aagcaattat tgactaaata caatgtctcc cgcatttata ttaattgtga
     2341 aattgcaata aagattctca ggaaaacaaa agcctaaatt ctttgttata gtaaaaattt
     2401 atactcaaat attatggcac gtacaagcac atatcttaac ttttcccgca atacagaaga
     2461 agctttcaat ttttacaaat cagtttttgg tggtgaattt ggcggcggtg gagttgcccg
     2521 gctaggcgat tttccaccac ccgaaggtgc cccgcaactg gccgaagaag ataaaaacct
     2581 gattatgcac atagaattgc ctattgttgg cggacatgta cttatgggaa ccgatgcgcc
     2641 cgaatcaatg ggatttcagg taattcaggg aaacaatatt cacatgaatc tggagcccga
     2701 cacacgcgaa gaaacaaaac gcctgtttga ggctttatcc gttggaggaa aagttacaat
     2761 ggaattgcag gatatgtttt ggggagctta ttacggcact ttgaccgaca aatttggtat
     2821 tcaatggatg tttaactgca caggtaaata ataaaatgga aaaaataaca ataactattc
     2881 aaacaactat caatgcaccg atagagaaag tatggaaatg tttcacgact cctgaagata
     2941 ttgtgaactg gaacaatgct tcagacgact ggcacaccac ttcagcaagt aatgaattgt
     3001 atgcgggtgg aaaattcaac tccagaatgg aagccaaaga cggaagtttt ggatttgatt
     3061 tctggggtat ttacgacgaa gtgattaatc atgaaaaact ggcttcaaca ttgggagatg
     3121 gcagaaagtt ggaaactaa
//
LOCUS       DATDNM010000310         2016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1533828, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000310 DATDNM010000000
VERSION     DATDNM010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1533828"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(215..544)
                     /locus_tag="VI413_05220"
     CDS             complement(215..544)
                     /locus_tag="VI413_05220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914057.1"
                     /translation="METTTKVQFYDLEKVRFIIKDACGIDIAYAYEDLVFSEHGLFII
                     QFLENSKELGCWFNKECLEQNKVSMFNSLAKSATLNKLELKYKGKFELSQKANSEEID
                     IQFNEVR"
     gene            complement(563..1024)
                     /gene="ndk"
                     /locus_tag="VI413_05225"
     CDS             complement(563..1024)
                     /gene="ndk"
                     /locus_tag="VI413_05225"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005808658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEY6914058.1"
                     /translation="MEKTFIIIKPCAIRRDVIGEIIHRFEMKGLQLCGIKMMQLDDKI
                     LDVHYAHLKGRPYFQRIKDSMMKTPVIVSVWKSIDCVQIAREMAGCTNGREATRGTIR
                     GDYSVSIQENIVHTSDSVESAKIEIARFFKEEEIFDFNQLSSSVLYACDEC"
     gene            complement(1091..1519)
                     /locus_tag="VI413_05230"
     CDS             complement(1091..1519)
                     /locus_tag="VI413_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914059.1"
                     /translation="MSTTIIPDEEMRTLAISSLQYANGFYKTLSNSINSEKSRFDNDM
                     LYNLAVIAVEKYFVGLMARYDWNATHHLPLALYKEALTFVPELTESMKQTAILVGKFE
                     AICSLEGFGYRTPSNEDLEKMTAGIKEIKELVEERIAEIK"
     gene            complement(1532..>2016)
                     /locus_tag="VI413_05235"
     CDS             complement(1532..>2016)
                     /locus_tag="VI413_05235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyruvate carboxyltransferase"
                     /protein_id="HEY6914060.1"
                     /translation="ERAGNAAMEEVAMALELSSGTPSTLHTEKLSELSEYVAKVSKRT
                     LSESKPITGSMVLTHESGIHTNCLLRNRNSYQLISAEKIGKTEPKFLIGKHSGKATIK
                     FYLAEANLPYTDEDCVLLVEKVKECAEALKRAITKEELLDLYTAGLTEKRKLEFNLNQ
                     "
BASE COUNT          515 a          431 c          365 g          705 t
ORIGIN      
        1 ggttttactc ccgaccaaat agaagatgct tttaatgtgc tggaactgaa atgccagact
       61 tatgagcagg cgggaagagt gaaagaagtg aaggcctggt tccggctgtt tagttagtca
      121 ctccgtaatt gcataaaaat agcatacgct gaaatgaagt tttttattca tttcagcgta
      181 tgcctttgtt gatagtttga tagagaatga aaaattatct gacttcatta aactgaatgt
      241 caatttcttc gctattcgct ttttgcgaca gttcaaattt tcctttatat tttagttcca
      301 gtttattgag tgtggccgat ttagccagtg agttgaacat actcacctta ttttgttcca
      361 agcactcttt gttgaaccag caacctaatt cttttgagtt ttcaagaaac tggataataa
      421 acaggccatg ttccgagaat accaaatctt cgtaggcgta agctatatct attccacaag
      481 catctttgat gataaacctg actttttcga gatcgtagaa ttgaacttta gttgttgttt
      541 ccatttttct gatttttatt gtttaacatt catcgcaagc atacaaaacg cttgaactta
      601 gttggttgaa atcgaatatt tcttcttctt tgaaaaatcg ggctatctca atctttgcac
      661 tttcaaccga atcggaggta tgaacaatgt tttcctggat gctgacacta taatcgccac
      721 gaattgttcc ccgggtagct tcgcgaccat tagtgcagcc ggccatttcg cgggcaattt
      781 gcacacagtc aatacttttc cagactgata caattaccgg cgttttcatc attgaatctt
      841 ttattcgctg aaaatatggt ctccctttca aatgagcata atgcacgtcc agaatcttat
      901 catcaagttg catcatcttt ataccacaca actgtaatcc tttcatttca aaccggtgaa
      961 tgatttcacc aattacatct cttcttattg cgcagggttt gataatgata aatgtctttt
     1021 ccatatttat ttagttgatt gttgatagtc agccgttgat agctgttaac tatcaaccga
     1081 taattatcaa ctatttaatt tctgctattc gttcttctac aagttctttt atttctttta
     1141 tacctgcagt cattttctcc aagtcttcgt tgctcggcgt tcggtatcca aaaccttcca
     1201 acgaacaaat agcctcaaat tttcctacca aaatggctgt ttgtttcatg ctctccgtca
     1261 attcaggtac aaatgtgagg gcttctttat aaagtgccag cggcagatga tgtgttgcat
     1321 tccagtcgta ccgcgccata agtcctacaa agtatttctc aacagctatt accgccaaat
     1381 tatagagcat atcgttgtcg aaacgcgatt tttcgctgtt tatactattc gatagggttt
     1441 tataaaaacc atttgcatat tgtaaactcg aaatggccaa tgtgcgcatt tcttcatcgg
     1501 ggattattgt tgttgacata tcttttctgc tttattgatt taaattgaat tccaacttgc
     1561 gcttttcagt caggccggca gtgtacagat ccaataattc ttctttagtt atggcgcgtt
     1621 tcaacgcttc agcacattct ttcacctttt ctactaacaa cacgcaatct tcgtcagtat
     1681 aaggcaaatt tgcttccgcc agataaaact tgattgtcgc ttttccgctg tgtttgccaa
     1741 taagaaactt gggttccgtt ttgccaattt tttctgccga aatgagctgg taactattcc
     1801 ggttcctgag caaacaattg gtgtgaatgc cgctttcgtg tgttaacacc atgcttcccg
     1861 ttatgggttt gctttcgctg agcgtgcgtt tggaaacttt ggccacgtat tcgctcaatt
     1921 cactcaactt ttcagtatgc aaagtgcttg gagtcccact gctcagttcc agggccattg
     1981 ccacttcttc catcgcagca tttccggcgc gttcgc
//
LOCUS       DATDNM010000311         3009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_680238, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000311 DATDNM010000000
VERSION     DATDNM010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_680238"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..575)
                     /locus_tag="VI413_05240"
     CDS             complement(<1..575)
                     /locus_tag="VI413_05240"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914061.1"
                     /translation="MKKLIIIVMSALFIFGMESCSDWLDLRPESETVLEDYWQTESQA
                     TAVLAGCYRGLIRNESMERMMVWGELRSDNVMMGDFILTDMKKILDVNITPTNPYADW
                     GPFYTVINYCNTFLHYAPSVVNKDQNFTATKLHTLEAEALTIRALCYFYLVRTFRDVP
                     LVITPSVSDADNFYVGKSTEREVLDQIIKDL"
     gene            complement(587..>3009)
                     /locus_tag="VI413_05245"
     CDS             complement(587..>3009)
                     /locus_tag="VI413_05245"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6914062.1"
                     /translation="FFNPAQNSQASNVVEYNYDKSFPNYENYNNNTDWVKEVTQIGNI
                     SDHYLTLSGGGERATYRVSGGFLSQNGTIIGQSNSRLSSRAYLDYAVSDRLKFIAELS
                     YTYSNYNRSYNFDFGDGNSPNEDLSILGIAYKKMPNSSVYKQDEFGNNTSEYFKTPSS
                     SSLNGDQRFLVNPVALAMRAKNNVKNYRTLPTFRLQYDFTDPNEQTLRYNMYVSFDIN
                     NDKTSKFLPSEIVNYGWTDSRFNRAESGDNESVNIQTDNNIAWVPNFENKDHNILLYG
                     SFQTTEGRSNFQGIESYGLTNPDAIDASVPAYLTAEHTGRSHWRSMGLLARMHYSYKS
                     RYIFDGTYRRDGSTKFGNGNKWGSFPGISLKWIASDEPFMESTKNWLSMLAFRPGWGL
                     AGNQPAFEYLHFSRYGDDGAYAGMSVQIPVSLQLRNLSWETTSSFNYGLDLGLFDDKI
                     QVDANLYFKRTKDNLFKDVGIPNSSGFGKLTYQNAGSMDNNGWEINFYANKLVSTKDF
                     SIDFRFNLSNSVNKIVYLNDNILNTYNGKYDYRNGSYLTRIQEGNAFGSIYGFRYKGV
                     YQYDKYVAGLQENAPVARNVDGKVVTNENGEPLPMYFNYSRRNGGSQYKFRGGDAIYE
                     DINHDGNIDELDIVYLGNSNPLLNGGFGPTFRYKNISCTMSFNFRYGNKIVNAARMFA
                     ENMYSTNNQSTVVNWRWRKDGDVTTIPRALFDFGYNWLGSDRFVEDGSFLRFKYLTFN
                     YSVPRKSLKKLKIEKVNLYVSFNNLLVFTKYTGVDPEVGYGDLGVSKDFGQTPRSKDM
                     TLGLTIGL"
BASE COUNT          885 a          650 c          548 g          926 t
ORIGIN      
        1 atcaaatctt taatgatctg gtcaagcact tcacgttcag tagatttgcc aacataaaaa
       61 ttgtcggcat cgctgacact tggagttata accagtggta cgtccctgaa agtccgcacc
      121 agatagaagt agcacaacgc acggatggta agtgcttccg cttcgagagt atgcagtttg
      181 gtagcggtaa agttctggtc tttattcacc accgaaggcg cataatgcag gaatgtgttg
      241 caatagttaa taaccgtata gaacggtccc cagtcggcat aaggattagt aggggtaatg
      301 ttcacatcca gtattttctt catatcggta aggataaaat cacccatcat aacattatcg
      361 gaacgtaact cgccccaaac catcatacgt tccatgcttt cgttgcggat aagtccacga
      421 tagcaaccgg ctaatacagc agtagcctgc gattctgttt gccagtaatc ttcaagtaca
      481 gtctcacttt caggtctgag atccaaccag tcagaacaac tttccattcc aaaaatgaaa
      541 agagccgaca ttactataat tattagtttc ttcataattt ttcttcttat aatccaatag
      601 ttaaaccaag tgtcatatct tttgaacgcg gagtttgtcc aaagtcctta ctaactccca
      661 agtctccata accgacttca ggatcaacac ctgtatattt tgtaaacacg agtaagttat
      721 tgaaagacac atacaggttt actttttcaa ttttgagttt tttgagcgat ttacgtggaa
      781 cagaataatt aaatgtcagg tatttgaacc ggaggaatga accatcttcc acaaagcggt
      841 cgcttccaag ccagttatat ccaaaatcga ataaagctct tggtattgta gttacatctc
      901 catctttgcg ccatctccag tttacaaccg tactctggtt attggttgaa tacatatttt
      961 cggcaaacat acgcgctgca tttacaattt tattaccgta ccggaaattg aacgacatag
     1021 tacacgatat gtttttgtaa cggaatgttg gtccgaaacc accgtttaat aatggatttg
     1081 agttacctaa gtacacaata tccagttcgt cgatatttcc atcgtggttg atatcttcat
     1141 aaatagcatc accgccacgg aatttatatt gcgatccgcc gtttcttctt gaataattaa
     1201 aatacattgg caatggttca ccattttcat tcgttaccac ttttccatcc acattgcggg
     1261 ctaccggagc attttcctgc aaacctgcaa catatttatc gtactgataa acacctttat
     1321 atctgaatcc gtaaatagat ccaaaggcat taccttcctg aatacgtgtt aaataacttc
     1381 cattccgata gtcgtatttg ccgttgtaag tattcaggat attgtcatta aggtaaacaa
     1441 tcttatttac agaattagaa agattaaacc tgaaatcgat gctaaaatct tttgtactga
     1501 ctaatttatt ggcataaaaa tttatttccc aaccattatt atccattgaa ccggcgttct
     1561 ggtatgtcaa cttgccgaac cctgaagagt ttggaatacc cacgtctttg aacaaattgt
     1621 cttttgtgcg cttgaaatat agattcgcgt ccacctgaat tttatcatcg aataatccca
     1681 ggtctaaacc atagttgaac gaagaagttg tttcccaact cagatttctt aactgcaacg
     1741 aaaccggtat ttgaacagac attccggcat aagcaccatc atcgccgtaa cggctgaagt
     1801 gcaaatactc gaaagccggt tgatttccgg caagccccca gcccggacga aatgccaaca
     1861 tgcttaacca gtttttggta ctttccataa atggctcatc ggatgcaatc catttgagtg
     1921 aaattccggg gaaactgccc catttatttc cattcccgaa tttggtactt ccatcccggc
     1981 ggtaggttcc atcaaagata taacggcttt tatacgaata gtgcatacgg gccaaaagtc
     2041 ccatggaacg ccagtgtgaa cgacccgtat gttctgcagt cagataagca ggaacagatg
     2101 catcgattgc gtcgggattt gtcaatccat acgattcaat tccctgaaag ttagatcgtc
     2161 cttcggttgt ttggaaagat ccgtataaca agatgttatg gtctttattt tcaaaattgg
     2221 gcacccaggc aatgttgtta tccgtctgaa tattaacaga ctcattatct ccactttcgg
     2281 cacggttaaa gcgactgtct gtccatccgt agtttacaat ttcagaaggc aggaacttcg
     2341 atgttttatc gttgtttatg tcaaacgata catacatatt atatctcaaa gtctgttcgt
     2401 ttggatctgt aaaatcatac tgaagtctga atgttggcaa ggtacgatag ttcttaacat
     2461 tatttttggc tctcattgcc aacgctacag ggttcaccaa aaatctttga tccccgttta
     2521 acgaagaaga acttggtgtt ttaaaatatt ccgaagtatt gtttccaaac tcatcctgtt
     2581 tataaacact tgaatttggc atcttcttat aagcaatacc caaaattgat aaatcttcat
     2641 tcggactatt accatcccca aaatcgaaat tgtaactccg gttataattt gaataggtat
     2701 atgaaagttc agcgataaat ttcaaacggt ccgaaacagc ataatcaaga taagccctgg
     2761 atgacaaacg gctgttgctt tggccgataa tggttccgtt ctgagataag aaacctccgg
     2821 aaacgcggta tgttgcccgc tcgcccccac ccgacaatgt cagataatga tcactgatat
     2881 taccaatttg agtaacttct tttacccaat cggtattgtt gttgtaattt tcgtaatttg
     2941 ggaatgattt atcatagtta tattccacca cattcgacgc ttggctgttc tgtgccggat
     3001 tgaaaaact
//
LOCUS       DATDNM010000312         3893 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1321891, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000312 DATDNM010000000
VERSION     DATDNM010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3893
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1321891"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1398)
                     /locus_tag="VI413_05250"
     CDS             complement(<1..1398)
                     /locus_tag="VI413_05250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004324615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6914063.1"
                     /translation="MLEKFLQQTEFKDFEDFKANYKLIVPENFNFAYDVVDAWAAKEP
                     NKRALLWTNDQGDCREFTFGEIKKYSDQTASYFQSLGIKKGDIVMAILKRRFEFWFTI
                     IALHKIGAIIIPATHLLTKKDLVYRNNAADIKAIIAVGEETIINHINDSMPESPSVEM
                     LISVGPNVPENWHDFHQGIENAVPFTPIANVNKNDDPLIISFTSGTTGNPKMVLLDCV
                     YPLAHIITAKYWHNLHEDSVHLTIADTGWLKAVWGKLYGQWIVGACVFVYDHEKFAPA
                     DMLEMIQKYRITSLCAPPTIFRFLIREDVSKYDLSSLEYCTIAGEALNPAVYEQFLKL
                     TGIKLKEGYGQSETTLSLFTAPWVEPKPGSMGLINPHYDVDLLTPEGRVAEVGEQGQI
                     VIRTDKQYPVGLFKGYYRNAELTYDAWHDNIYYTGDVAWRDEDGYFWFVGRADDVIKS
                     SGYRIGPFEVESALMT"
     gene            complement(1844..2392)
                     /locus_tag="VI413_05255"
     CDS             complement(1844..2392)
                     /locus_tag="VI413_05255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004292256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEY6914064.1"
                     /translation="MNTQIKQIAERLRGLRDALNLTIAQAAEKCGIPETDYARYESGA
                     GDIPMSFICEVAQTFGVETSALFTGNDPHSLAYFVTRKGTGASIERTKAYKYQALANG
                     FRHAKAEPFEVTVEPSDQPMHLNSHAGQEFNLILEGTMQLHIGGNDISLNEGDSIYFD
                     ATKPHGMKALNAKKVRFLAVIV"
     gene            complement(2463..3263)
                     /gene="proC"
                     /locus_tag="VI413_05260"
     CDS             complement(2463..3263)
                     /gene="proC"
                     /locus_tag="VI413_05260"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEY6914065.1"
                     /translation="METTNLQIAIIGAGNMGGAIARGLSKGSLIQSKNIRVSDVSQAN
                     LDAIKAFDAEITVSNSNRDIIKDADIILLAVKPWLVEAISEELENKFDYKNQIVVSIA
                     AGVDFDQLARLFNTDATMFRVIPNTAIDVLQSVSTISSFNASKEQEELIVSLFAELGK
                     AFLVPETQLNAFMALSSCGIAYAFRYIRAATEGGVEMGIYPHVAKEVVIQTLRGAIDL
                     LEANNSHPEVEIDKVTTPGGITIKGLNEMEANGFTNAVIKGLKASHLK"
     gene            complement(3357..>3893)
                     /locus_tag="VI413_05265"
     CDS             complement(3357..>3893)
                     /locus_tag="VI413_05265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914066.1"
                     /translation="AFKHFIHLDVGELDYTVETGWIFGKVPYPMLETPIGTLTDGNGA
                     YQLKFPTGTGLGGYSMYGYNMMRYMEYGADKYINLHSELTLNGLLMNQIPLIKQLNLR
                     ELFSFKMAYGSLSNSHQTIMDYPGFMKPLTKPYMELGVGITNIMHFLSLQTVWRLTDA
                     NKSGVTEWGIRLGISIGF"
BASE COUNT         1060 a          831 c          823 g         1179 t
ORIGIN      
        1 cgtcatcaac gcactttcca cttcgaatgg cccaatgcga taaccggaac ttttaattac
       61 gtcgtcggca cgtcctacga accagaaata gccatcttcg tcgcgccagg ccacgtcgcc
      121 ggtgtaataa atattatcat gccatgcatc ataagtcagt tcggcgttgc ggtaatagcc
      181 tttaaacaat cccaccggat actgcttatc ggtgcggatt acaatttgcc cttgttcacc
      241 aacttcggcc acacggcctt ccggagtaag caaatctaca tcgtaatgcg gatttataag
      301 tcccatcgaa cctggtttcg gttccaccca cggcgcggta aagagcgata aagtggtttc
      361 gctttgtccg taaccttctt tcagtttaat gcctgtgagt ttcaggaatt gctcatacac
      421 agcaggattc agcgcctcgc ctgcaatggt gcaatattcc agcgatgata ggtcgtattt
      481 actcacatct tcgcgaatca ggaagcggaa aatagtcgga ggcgcacaaa gcgatgtaat
      541 acggtatttc tgaatcattt ccaacatgtc tgccggcgca aatttctcat gatcgtacac
      601 aaatacgcat gcacctacaa tccattgccc gtagagtttc ccccaaacgg ctttcagcca
      661 gccggtatct gcaatggtaa ggtgaacgct gtcttcgtgc aggttgtgcc aatatttggc
      721 ggtaataatg tgtgccaacg gataaacgca gtccagcaat accattttcg ggttgccggt
      781 agtgcccgaa gtaaagctga taatcagcgg atcatcgttt ttattgacgt tggcaatagg
      841 tgtaaatggt actgcatttt caattccctg gtggaaatcg tgccagttct caggtacgtt
      901 tggtccaacg gaaataagca tttccacgct tggtgattcg ggcatcgaat cattgatatg
      961 attgataata gtttcttctc caactgcaat aatagcttta atatcggcag cattgttgcg
     1021 gtaaaccagg tcctttttag tcaataaatg cgtggctgga atgataatgg ccccgatttt
     1081 atgcaatgca ataatcgtaa accagaattc gaaacggcgt ttgaggatag ccattacgat
     1141 atcgcctttt ttgataccca ggctttggaa atacgaagca gtctggtcgc tgtatttttt
     1201 tatttcgcca aaagtaaact cccggcaatc accctggtcg tttgtccaga gcaaggcacg
     1261 cttgttgggt tccttggctg cccaggcatc taccacatca tacgcaaaat tgaagttctc
     1321 gggaacaata agtttgtagt ttgctttgaa atcttcaaag tctttgaatt cggtttgttg
     1381 aagaaacttt tctaacataa gcaattcttt aaagcattta tttgaggtta caaagaaata
     1441 tcaaaagatc atgtgagcca ataaacaggg gtaaaacccg gctatttggg ataaaatttc
     1501 aaattatggg ataaaatatg ggacacatag gttcgcaata gtttttacac aatagaaaca
     1561 catagttaat ttacgaagat attagctagc tatttctttt ttcaaaacac atagtaaaat
     1621 ctggtgttgt gttaattgtg aattgccggc tgctttagct gccggtaatg tgaaaaaaaa
     1681 atttccggct ttagccaaat ggatttatga tttggctaaa gcccatttcc actatcacaa
     1741 attatccgcc ccataaatgg gacggcaatt aaatgaaccc gctaaaaccc gcctgacata
     1801 acattagtat atagtaaaac acagtttcta tgtgattgaa aaatcacact atcacagcca
     1861 ggaaacgtac tttttttgca ttcagggctt tcatgccatg cggtttggtg gcatcaaagt
     1921 aaatgctgtc gccttcgttg agtgaaatat catttccgcc aatgtgcagt tgcatggttc
     1981 cttccaaaat caggttgaac tcttgtccgg catggctgtt caaatgcatg ggttggtcac
     2041 tgggctcaac ggtaacttca aatggttcgg ctttggcatg gcggaatccg tttgccaacg
     2101 cttggtattt gtaggctttt gtgcgttcaa tgctggcacc ggttcctttg cgggtaacga
     2161 aataagcaag tgaatgagga tcatttccag taaaaagagc ggaagtttca acgccaaatg
     2221 tttgtgccac ctcgcatata aaactcatgg gaatatcgcc ggctcccgat tcgtagcgtg
     2281 cataatctgt ttcgggaata ccgcattttt cagcagcctg ggcaatagtc aggttaagcg
     2341 catcgcgtaa tccgcgcaac ctttcagcaa tttgtttgat ttgtgtgttc atagtagtag
     2401 aattttaagg tgtaaacttt tccaaagttc aaaactttgg aaaagttgtt cgaggttata
     2461 tgttatttca agtgcgaagc tttcaaccct ttaatcaccg cattggtaaa tccgttggct
     2521 tccatttcgt tgagtccttt gatggtaatg ccgcccgggg ttgttacctt gtcaatttcc
     2581 acttcggggt gcgagttgtt agcctccagc agatcgatgg ctccgcgaag ggtctgtatc
     2641 actacttctt tggccacatg ggggtaaatg cccatttcca caccaccttc ggtggctgca
     2701 cgaatgtaac ggaaggcgta agcaattccg cacgatgaca aagccataaa ggcattcagt
     2761 tgtgtttcgg gaaccagaaa tgctttgccc agttcggcaa ataaggaaac gattagttct
     2821 tcctgttctt tcgaagcatt gaacgacgaa atggtggaaa cactttgcaa tacgtcgata
     2881 gcagtatttg gtatcacacg gaacatggtg gcatcggtat tgaagagtct ggctaactgg
     2941 tcaaaatcaa ctccggctgc tatagagaca acgatttgat ttttataatc gaatttgttt
     3001 tccagttctt cactaatcgc ttcaaccaac catggtttca ctgccaacaa aatgatatcg
     3061 gcgtctttga taatatcgcg gttggaattg ctaacggtaa tttcagcatc aaaagcttta
     3121 atggcatcca ggttggcttg cgaaacgtcg ctcacacgga tatttttcga ttgaataagg
     3181 ctacctttcg ataagccgcg ggcaattgcg ccacccatgt ttccggctcc gataatggca
     3241 atttgaaggt tggttgtttc cataatttga tattttagtt ctaattcgtt cgtaatttga
     3301 ctacaaagat ataatttttt atcatctcac tcttttttta ttatattgat tttgatttaa
     3361 aaaccaatgc ttattcctaa tctaataccc cattccgtaa cgccgctttt atttgcatca
     3421 gtcagtcgcc atacagtttg aagtgacaaa aaatgcataa tgtttgtaat gccaacacca
     3481 agttccatat aaggctttgt tagtggtttc atgaagccgg ggtagtccat aattgtttga
     3541 tgtgaattac ttaacgaacc gtacgccatt ttaaatgaga atagttctcg caaattcaac
     3601 tgttttatta gtggaatctg attcataagg agtccattca atgttagttc actatgcaaa
     3661 ttgatatatt tatcagctcc atattccatg tatctcatca tgttgtagcc atacatgctg
     3721 tagccgccaa gccctgttcc ggtaggaaat ttaagttgat atgcaccgtt gccatccgtc
     3781 aatgttccta tgggagtttc gagcattgga taaggtactt tcccaaaaat ccaacctgtt
     3841 tctacagtat aatccagctc tccaacatca agatgaataa agtgcttgaa tgc
//
LOCUS       DATDNM010000313         4479 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1429019, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000313 DATDNM010000000
VERSION     DATDNM010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4479
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1429019"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1054)
                     /locus_tag="VI413_05270"
     CDS             complement(<1..1054)
                     /locus_tag="VI413_05270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011967282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY6914067.1"
                     /translation="MKKISILFVISIFTPLIFAQGFSSLQQRKLTNALTAISNLYVDS
                     INDKKLVEDVLEGVLKELDPHSSYIPKEEVERVNEPLEGSFEGVGIQFQLLEDTLLVV
                     QTISGCPAEKVGVLPGDRIIYINNELVAGVKMQNSDIFKRLRGQKGTEVTVKIQRGGK
                     PSLIEFKIIRDKIPIYSVDASYMIGKEIGYIKINNFGSSTVQEFQKAFASLQKKGMKN
                     LILSLQGNGGGYLNAAIGMADEFLGRNKLIVYTQGLNQPKTVAEATASGNFETGKMIV
                     LVDEYSASASEILSGALQDWDRAIIVGRRSFGKGLVQRQFPLIDGSMMRLTVARYYTP
                     TGRCIQKSYKDGIDKYE"
     gene            complement(1175..1813)
                     /locus_tag="VI413_05275"
     CDS             complement(1175..1813)
                     /locus_tag="VI413_05275"
                     /inference="COORDINATES: protein motif:HMM:NF013213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEY6914068.1"
                     /translation="MFVDIHTYTKSQTQHASIRNLTLSEAEAFFSSNTEETVSAGIHP
                     WHADDFTEESICDIEKWLEDNRLVAIGECGLDKNSKASIEKQLFTFNKQVELSEQFKK
                     PLIIHCVGCFNELFELKQSLKPQQLWIIHGFRGKPELAKQALKNGCALSFGSHFNPES
                     VRVTPIEKLYIETDESDLSIDELYAQVAIAKDCTPNHLSAGRTLFQLIEANK"
     gene            1955..3376
                     /gene="ahcY"
                     /locus_tag="VI413_05280"
     CDS             1955..3376
                     /gene="ahcY"
                     /locus_tag="VI413_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEY6914069.1"
                     /translation="MNTTELFSTLPYKVADMSLADFGRKEIELAEKEMPGLMALRVKY
                     GQQKPLKGARIMGSLHMTIQTAVLIETLVELGADVRWCSCNIYSTQDHAAAAIAAAGV
                     PVFAWKGESLQEYWWCTLQALTFEGHQGPTVIVDDGGDATMMIHVGGAAEKDATVLDK
                     VAGGDDERLLYAILKDVLKEDNSIWNRMIPGIRGVSEETTTGVHRLYQMLEEGSLLFP
                     AFNVNDSVTKSKFDNLYGCRESLADGIKRATDIMLAGKVVVVCGYGDVGKGCARSMLA
                     YGARVIVTEIDPICALQASMEGFQVTTIEDALAEGNIFVTTTGNKDIIRIEHIAKMKD
                     AAIICNIGHFDNEIQVEKLKQFPGIQCVNIKPQVDKYIFPDGHCILLLADGRLVNLGC
                     ATGHPSFVMSNSFTNQTLAQIELYTKDYAVDVYRLPKHLDEEVARLHLEQLGVKLTVL
                     TPEQAAYIGVDANGPYKPEHYRY"
     gene            complement(3480..4343)
                     /locus_tag="VI413_05285"
     CDS             complement(3480..4343)
                     /locus_tag="VI413_05285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004351222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEY6914070.1"
                     /translation="MFISFKKIFLFFTLIISVWGLNAQQINYSLIPKRDTINIYQQML
                     NDQSDDLMENHPADDIYNNIWRSDHVNPYKIPIDSLPDSVRIDCSHFVIPVPGAVTSQ
                     FGPRRYRFHYGTDLRLNVGDTVRAAFSGKVRIIEYEARGYGNYIVVRHDNGLETVYGH
                     LSAVLVNLNQKVKAGDLIAYGGNTGHSTGPHLHFETRYLGNAINPATIIDFNSGLVHE
                     RTYLLTKKKSFYYQHEVKLASVAKYYTVRKGDNLSKVAARNGTNVKSLCRINGLKPKA
                     HLKAGQRLRVR"
BASE COUNT         1308 a          829 c          912 g         1430 t
ORIGIN      
        1 gttcgtattt gtcgatacca tccttatatg atttctgaat acagcgtccg gttggtgtgt
       61 aataacgcgc aacagtaagt cgcatcattg aaccgtcaat caacgggaac tggcgttgaa
      121 caaggccttt gccaaatgac cgtcggccta caattattgc acgatcccaa tcttgcagtg
      181 cccctgaaag aatctcactg gccgaagccg aatattcgtc taccaacaca atcattttcc
      241 ctgtttcgaa attgcccgaa gctgttgctt ctgcaactgt tttcggttgg ttaagtcctt
      301 gtgtgtagac aattaatttg tttctaccca gaaattcgtc ggccatacca attgctgcgt
      361 tgagatatcc accaccattg ccctgcaaac tgagaatcag gtttttcatc ccttttttct
      421 gcaggcttgc aaaagctttc tggaattcct gaactgtaga acttccaaaa ttatttattt
      481 tgatgtaacc aatttctttc ccaatcatat agcttgcatc cacgctataa attggaattt
      541 tatcacgaat aattttgaat tcaataagtg atggtttccc gccccgttga atttttacag
      601 ttacttcagt ccctttttgt ccacgaagcc gtttaaaaat gtcggagttt tgcattttga
      661 cacccgcaac taattcatta ttgatgtata tgattctatc gccgggtagg acacccactt
      721 tttcggccgg gcaaccagaa atagtttgaa ctaccagaag tgtgtcttca agcaattgaa
      781 actgaattcc taccccttcg aaacttcctt caagaggttc gtttacgcgt tcaacttctt
      841 cttttggaat gtaagatgag tgtgggtcaa gctctttcag aaccccttca agcacatctt
      901 ccaccagttt tttgtcattt atactatcga catataaatt ggaaatggca gttaaggcgt
      961 tagttaattt gcgctgttgc aatgaggaaa agccctgtgc aaaaataaga ggcgtaaaaa
     1021 tgcttataac gaataggata cttatctttt tcatgaaata tagatattta tttttttgga
     1081 tggcaaagat acaataatat gtaataagaa tttaaaaatg accaattaat ataagccaac
     1141 tgagggtaaa attattaaaa atgacaagtg aattctattt gttggcctca attaattgaa
     1201 ataaagtcct acctgcagat aaatggtttg gggtgcaatc tttagctatt gctacttgag
     1261 cgtacagttc gtcaattgac aaatcacttt cgtcagtttc aatatacagc ttttcgattg
     1321 gagtgacccg aaccgattcg ggattaaaat gtgaaccaaa cgataatgca cagccatttt
     1381 ttaaagcttg ttttgccagt tccggtttgc ctctgaaacc atgaataatc caaagttgtt
     1441 gcggttttaa agattgcttt aattcaaaaa gttcattgaa gcagccaaca cagtgaataa
     1501 ttaatggctt tttaaattgt tcggaaagtt cgacttgttt gttgaatgta aataattgtt
     1561 tttcaataga agctttacta tttttatcta aaccacattc gccaattgcc actagtctat
     1621 tgtcttccaa ccatttttca atgtcgcata ttgactcttc agtgaaatca tcagcatgcc
     1681 atgggtgaat cccagccgaa acagtttctt ctgtatttga agaaaaaaac gcttcagctt
     1741 cagaaagtgt aagattcctg atcgaagcat gttgtgtttg tgatttggta tatgtgtgga
     1801 tatctacgaa cataattata ataattgaag aacaaagata agcaattgca ttaagatttg
     1861 tttaataatc aatagcccat tattcattat taattagttt attgtatctt tgcactccct
     1921 ttttgaaata aaaatcaaac acttaaaaca gaatatgaat acaaccgaat tattcagcac
     1981 tttgccttat aaagttgctg acatgtcgtt ggctgacttt ggccgcaaag agattgaatt
     2041 agccgaaaaa gaaatgccag gattgatggc tttgcgtgtg aaatacggac aacaaaaacc
     2101 gttgaaaggt gcccgtatca tgggttcgct tcacatgacc attcaaactg ccgtacttat
     2161 tgaaacgttg gtagaacttg gtgctgatgt acgctggtgt agctgtaata tttattctac
     2221 acaggatcat gctgctgccg ctattgccgc tgccggtgtt ccggtttttg catggaaagg
     2281 tgaatctttg caagaatact ggtggtgtac acttcaggca ttgacttttg aaggtcacca
     2341 ggggccaact gtaattgttg atgatggtgg tgatgcaact atgatgattc acgtaggtgg
     2401 agcggcagag aaagatgcaa cagtgctgga taaagttgct ggtggtgacg atgagcgttt
     2461 gttgtatgca attttgaaag acgtactgaa agaagataat agcatttgga accgtatgat
     2521 cccgggaatc cgtggtgttt ctgaagaaac tactaccggt gttcaccgtt tgtaccaaat
     2581 gttggaagaa ggttcgttat tgttcccggc tttcaatgta aatgattcgg ttacaaaatc
     2641 aaaatttgat aacttgtacg gctgtcgtga gtcgttggct gacggtatca aacgtgccac
     2701 cgacattatg ttggcaggta aagtggtagt tgtttgtggt tacggcgacg tgggcaaagg
     2761 ttgtgcacgt tcgatgttgg cttatggagc ccgtgttatt gtaactgaaa ttgatccgat
     2821 ttgtgctctt caggcttcaa tggaaggttt ccaggtaact acaattgaag acgcattggc
     2881 agaaggaaat atttttgtaa ccacaaccgg aaacaaagat attatccgca ttgagcatat
     2941 cgcaaaaatg aaagatgctg caattatttg caatattggc catttcgata atgaaattca
     3001 ggttgagaag ttgaaacaat tcccgggcat tcaatgtgtg aatattaaac cacaggttga
     3061 caaatatatt ttccctgatg gacattgtat cttgttgttg gcagatggtc gtttggtgaa
     3121 tcttggttgt gcaactggtc acccatcgtt tgtaatgagt aactcgttta ccaatcagac
     3181 tttggctcag attgaattgt ataccaaaga ttatgcagtt gacgtttatc gcttaccaaa
     3241 gcatttggac gaagaagtag cacgtttgca cctggaacaa ttaggcgtta agctgacagt
     3301 tcttacacct gaacaagcag cttacattgg tgtagatgct aatggaccat ataaacctga
     3361 acattacaga tattaatctg ctgttagttt agagttaata gtattatata aaaagaaagc
     3421 cgttttcatt catttgaaaa cggctttctt tatcttggtt tattagttta gatcgagttt
     3481 tatctaactc tcaatcgttg tccggctttt aaatgtgctt ttggtttgag cccatttatg
     3541 cgacacaagg atttgacgtt tgtaccatta cgtgctgcga ctttgcttaa attatcaccc
     3601 ttgcgcacag tgtagtattt tgctacagaa gccaacttaa cttcatgttg gtaatagaac
     3661 gatttctttt ttgtgagcaa atacgttctt tcatgaacca aaccgctgtt gaaatcaatt
     3721 atggtagccg gattgatggc atttcccagg tagcgggttt caaaatgcag gtgaggccct
     3781 gttgaatgac cggtatttcc gccgtaagca atcaggtcac cagcttttac tttctgattc
     3841 agattgacca atactgctga aagatggcca tacacagtct ccaacccatt gtcatgacgt
     3901 actacaatat agtttccata gccccgcgct tcatattcaa taatacgaac tttgcccgaa
     3961 aaagcagcac gaacagtgtc gccaacattt aaacgcaggt cggttccata atgaaaacga
     4021 taacgccggg gtccgaattg ggacgtgaca gcgcccggaa ctggaataac aaaatgtgaa
     4081 caatctattc gcactgagtc aggcaagctg tcaattggaa ttttataggg atttacatgg
     4141 tcacttctcc aaatgttatt gtaaatatca tcggcagggt ggttttccat taagtcatca
     4201 gattgatcat tcaacatttg ttgatagatg tttatcgtat ctctttttgg gataagactg
     4261 taattaatct gttgcgcgtt taaaccccaa accgaaatga taagggtaaa gaataaaaag
     4321 atttttttga aggaaatgaa catgaaaaaa agattttgac ctgactccgg tctataatta
     4381 gtatactatt gttgtgttaa acaatttcgt cctcggaata aatatattca agataagatt
     4441 gcttgtattc gaagatttct tattctttga aaaaacgcg
//
LOCUS       DATDNM010000314         2843 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_894400, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000314 DATDNM010000000
VERSION     DATDNM010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2843
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_894400"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..488)
                     /gene="cmk"
                     /locus_tag="VI413_05290"
     CDS             complement(<1..488)
                     /gene="cmk"
                     /locus_tag="VI413_05290"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005858908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEY6914071.1"
                     /translation="MKKIVVAIDGFSSCGKSTMAKELAREAGYIYVDTGAMYRAVSLF
                     CIQNGWMTETEINSEELEKHIHSIRIEFKTNAEGKSETYLNGKNVENEIRSLEVANGA
                     SRVSTLGFVRRELVRQQQLMGLTKGIVMDGRDIGTVVFPHAELKIFLTASPEIRAKRR
                     LD"
     gene            complement(542..1597)
                     /gene="porQ"
                     /locus_tag="VI413_05295"
     CDS             complement(542..1597)
                     /gene="porQ"
                     /locus_tag="VI413_05295"
                     /inference="COORDINATES: protein motif:HMM:NF033711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IX secretion system protein PorQ"
                     /protein_id="HEY6914072.1"
                     /translation="MTKRVFTLLLIIASSVITFAQAGHGVYQFLDLPVSSRLAALGGT
                     NISLRDNDLNFAFGNPALLTAETNNVVGLSMANYLADIKFGSAVYGRTIGEKNYFGIG
                     IQYIDYGMFQETTELNEFTGQTFTAKDMALNIMYARPMTDKVSVGATLKPVYSVYERY
                     TSYGLAMDAGVSYNDPANLFSAGLVFRNIGTQFKGYYSDETGQHFEPIPFNIQLGASK
                     KFAHAPLRLSLTLHNLQRWDLNYQSTNQPSTSITSSNTTPSTTSNIRFIDMAFRHTIF
                     GVEFVPSKNFYLSMGYNHRRHAEMTVSGFKSMAGFSFGGGIKIYKFHVGFGTTQFLAG
                     NSSYQFSISTALNEFRL"
     gene            1990..>2843
                     /gene="hflX"
                     /locus_tag="VI413_05300"
     CDS             1990..>2843
                     /gene="hflX"
                     /locus_tag="VI413_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEY6914073.1"
                     /translation="MKTEIYEEKAVLVGVITQVQSEEKAREYLDELAFLAETAGASPE
                     KLFFQRMDFPNPKTYVGPGKLIEIKNFVDENEIGVVIFDDELSPKQLRNIEAELKVLI
                     LDRTTLILDIFAKRAQTASAKTQVELAQCQYMLPRLTRLWTHLERQKGGIGMRGPGET
                     QIETDRRIILTKISLLKQNLKDIDQQMATQRKNRGKMVRVALVGYTNVGKSTLMNLIS
                     KSDIFAENKLFATLDTTVRKVIVENLPFLLSDTVGFIRKLPHHLVQSFKSTLDEVREA
                     DLLVHVVDV"
BASE COUNT          818 a          576 c          600 g          849 t
ORIGIN      
        1 tcgtccaacc tgcgttttgc ccgaatttcc ggtgaagcag tcagaaatat cttcaattct
       61 gcatggggga aaaccactgt gccaatgtcg cggccatcca ttacaatacc tttcgtcaag
      121 cccataagtt gttgctgtcg aactaattcg cgacgaacaa atcccaacgt gcttacccgg
      181 cttgctccat tggcaacttc caatgacctt atttcgtttt caacattttt tccgttcagg
      241 taagtttccg attttccttc ggcattcgtt ttaaattcaa tccggatgga gtggatatgc
      301 ttttccagtt cctctgagtt tatttccgtt tcggtcatcc agccattctg gatgcaaaac
      361 agcgaaacag cccggtacat tgcaccggta tcaacataaa tatagcccgc ttcgcgagct
      421 aattcttttg ccattgtact tttaccacac gacgaaaacc cgtcgatagc tacaactatt
      481 tttttcattt ttcctcttat ttcttgctcc tgattaacca attagccgtt caattaacca
      541 cctaaagtct gaattcattg agggcagtgc tgattgagaa ctggtatgaa ctatttccgg
      601 ccagaaactg cgttgttccg aagcctacgt gaaatttgta aattttaatt ccacctccga
      661 atgaaaatcc ggccatactc ttaaatccac taactgtcat ttcagcatgg cggcgatgat
      721 tgtatcccat tgataagtag aagttcttgg atggaacgaa ttctacccca aagattgtat
      781 gcctgaacgc catatcgata aaacggatat tgctggtggt tgaaggtgtg gtgttggatg
      841 aagtgattga agtactgggc tggttggttg actgataatt caaatcccac ctttgcaggt
      901 tatgtagcgt cagcgaaaga cgaagcggag catgtgcaaa ttttttagaa gcacccaatt
      961 ggatattaaa tggtattggc tcaaagtgct gtccggtttc gtcagaataa taccctttaa
     1021 actgtgttcc aatgtttctg aaaaccaaac ctgcagaaaa taagtttgcc ggatcattat
     1081 agcttacacc tgcatccatt gccaatccgt aactcgtata gcgttcatag actgaataca
     1141 ccggcttaag ggttgctccc acagaaactt tatcggtcat ggggcgggca tacattatat
     1201 ttaatgccat atctttggcg gtaaatgtct gtccggtaaa ttcgtttagt tccgtggttt
     1261 cttgaaacat tccgtagtca atgtactgga ttccaatgcc gaaataattt ttttcgccaa
     1321 ttgttctgcc atacacagcc gatccgaatt taatgtcggc caggtaatta gccatgctca
     1381 atcctacaac attgtttgtt tctgctgtaa gtaaagccgg atttccaaaa gcaaaattta
     1441 agtcgttgtc gcgtaacgaa atatttgtac cacccaatgc tgccaggcgg gatgatacag
     1501 gcaagtccag aaattgatat acaccatgtc ctgcctgtgc aaaggtgata acagacgatg
     1561 ctattattag tagtaatgtg aaaactcttt tagtcatcag gtgtgaatta ttgaaacctt
     1621 tatttagtaa atgatttcac tttcaatttt tcaaaaaaca gccaaagata cattattttt
     1681 gtggactgaa agtgttgaaa tggaatttct atttgtctta acggtaaaaa agtgaaaaat
     1741 aatatctttg ggtcgaaaaa aaatataaca aagaagctaa tggaatattc gaccaacaaa
     1801 tatttccgtt tttgatttta ataaaatgag catctcaaaa aaatatagta catttgcttg
     1861 ttagtagatt cgaccggaca ttttgctgca aacagtggta ttacgtcagt ttttttattg
     1921 caggagcgac tctataatat tcaagccgtt tggatttgcc aatcgttttt ttttgataaa
     1981 ctaaaacaga tgaaaacaga aatatacgaa gaaaaagccg ttttggtggg tgtaataact
     2041 caggtacaga gcgaagaaaa agcccgggaa tatctcgacg aactggcctt tttagctgaa
     2101 acagccggtg catcgccgga gaaattgttt tttcagcgga tggattttcc aaatccgaaa
     2161 acctatgtcg gcccgggaaa attaatcgaa atcaagaact ttgtggatga aaatgaaatc
     2221 ggggtggtta tttttgacga cgaattgtcg cccaaacagt tgcggaatat cgaggctgaa
     2281 ttgaaggtgc ttattctcga cagaacaact ttgattcttg atatttttgc gaaacgtgct
     2341 cagactgcca gtgccaaaac tcaggtggaa ctggctcaat gccaatacat gttacctcgc
     2401 ctgacaaggc tgtggactca cctcgaacgc caaaaagggg gaatcgggat gcgcggtccc
     2461 ggtgaaacgc agattgaaac cgaccgccgt attattctta ccaaaatatc gttgctgaaa
     2521 caaaacctga aagatattga ccagcaaatg gctacgcagc gcaaaaaccg tggcaaaatg
     2581 gtgcgtgtag cgttagtggg ttataccaat gtggggaaat cgactttgat gaacctgatt
     2641 agtaaatcgg atatttttgc agaaaataag ctttttgcta cactggatac gactgtccgg
     2701 aaggtgattg tcgaaaatct gccattcctg ctttcggata cggttgggtt tatccgcaaa
     2761 ttgcctcatc atttggtgca atcgtttaaa tctactcttg acgaagtgcg cgaggccgat
     2821 ttgctggtgc atgtggtgga tgt
//
LOCUS       DATDNM010000315         2406 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1429322, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000315 DATDNM010000000
VERSION     DATDNM010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2406
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1429322"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..578)
                     /gene="argS"
                     /locus_tag="VI413_05305"
     CDS             complement(<1..578)
                     /gene="argS"
                     /locus_tag="VI413_05305"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002558220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEY6914074.1"
                     /translation="MNLETILSALVGEAVKSLYGLETEASQIQLQKTKKEFEGDITVV
                     TFPFVKAARKSPEQTGQQIGEYLQQQSPVISAFNVIKGFLNLSISKSYWLETLNEIHG
                     NASFGTKEVKDDADLMMIEYSSPNTNKPLHLGHIRNNLLGFSIAEIQKANGWKVVKTN
                     IVNDRGIHICKSMLAWKLFGNGETPESTGMKG"
     gene            complement(746..1414)
                     /locus_tag="VI413_05310"
     CDS             complement(746..1414)
                     /locus_tag="VI413_05310"
                     /inference="COORDINATES: protein motif:HMM:NF024957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HEY6914075.1"
                     /translation="MKKMIFMAVLLLSVSTMFAQLNFGIKAGYNSSLGLNNLSSVSSG
                     DYNLNSVKSELSNGFHMGLFARLGFDKIYFQPELLYAMGKKDYTITFQEVQSNNVTYD
                     KIVNISTVDVPLLLGYKLLDLKIANLRVFAGPKFRFNAGSSLDFKNITNSNNSPTLPD
                     LERDIKAAQLGLEAGVGVDVLMFTLDARYNIIGDMYQTKLNSLTIDNIPANTFVISLG
                     WKLF"
     gene            complement(1451..>2406)
                     /locus_tag="VI413_05315"
     CDS             complement(1451..>2406)
                     /locus_tag="VI413_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006844145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY6914076.1"
                     /translation="MRNKISLILLLCGCLLQTAFSIEPVFSFPIPTKVEFAGQTISLE
                     RYDMRERFDREQIVIAYNHSVSMLIIKRANRYFPIIEPILKRNGIPDDFKYLTVIESN
                     LDPRAISGAQAAGFWQLMPKTAEQFGLEVNDEIDERYHVEKSTDAACKYFKSAYNKYN
                     NWTTVAASYNAGMGRISEEQAKQQVDESFDMLLNAETSRYVFRILAMKQFLENPKAFG
                     YTLDYNDFYQTVGTKVVSVKTSVDDWTAWAAKYGMSYYQLKDFNIWLRDRKLTNSNKK
                     EYLIQVPEAADLKFKSSKIKIHNPQWVTFKNTIIPIFQINR"
BASE COUNT          718 a          492 c          427 g          769 t
ORIGIN      
        1 tcgcctttca tgcctgtact ttcgggtgtt tctccgtttc cgaaaagctt ccaggctaac
       61 atggacttgc aaatatgaat accgcggtcg ttgacaatat tggttttcac caccttccag
      121 ccatttgcct tttgaatttc agcgatactg aatccgagca aattattgcg gatatgtcct
      181 aaatgaagtg gtttattcgt atttggcgaa gagtattcaa tcatcattaa gtcagcatca
      241 tccttcactt ctttcgttcc aaaagatgca tttccatgaa tttcattcaa cgtttccaac
      301 caatagcttt tgctgatact cagattcaaa aagcctttga ttacattaaa tgctgaaatc
      361 actggacttt gctgttgcag gtattccccg atttgctgcc cggtttgttc gggcgatttg
      421 cgggccgctt ttacaaatgg gaatgtaact acggttatat cgccttcaaa ttctttcttt
      481 gttttctgaa gctgtatctg acttgcctct gtttccaaac cgtaaagcga ttttacagct
      541 tctccaacaa gggcgctaag gatagtttct aaattcatgt ttctttagtt tttgttcgaa
      601 gtgcaaagat acaaaaatta gtgataaaat ttaaatggta agacaaggca gcattgaatg
      661 actttccagc agttaagtga ctgtttttta taaaaaaaat gcctgcttct cccagtgaga
      721 aacaggcatt caaacaagaa aagacttaaa ataatttcca accaagagaa attacgaatg
      781 tattagctgg gatgttatca atagtcagcg agttaagttt tgtctggtac atatcgccaa
      841 ttatattata gcgtgcatcc aacgtaaaca taagcacatc aactccaacg ccagcctcaa
      901 ggcctagttg agctgctttt atgtctcttt ccaaatcagg caatgtagga gaattgttac
      961 tattagtaat atttttaaaa tcaagtgaag agcccgcatt aaagcggaat ttcggacctg
     1021 caaacacgcg caggttggca attttcaaat ctaacagctt atagcctagc aacaaaggca
     1081 catccactgt acttatattg acaattttgt cgtatgtgac attattactc tggacttctt
     1141 gaaatgtaat ggtatagtct ttcttgccca ttgcatataa cagttctggc tggaagtaaa
     1201 ttttatcaaa acctaaacga gcaaaaagcc ccatgtgaaa gccattcgac aattcggatt
     1261 ttactgaatt taaattatag tcacccgaac ttacagaact aagattgttt aatcccaacg
     1321 acgaattata tccggctttg attccaaaat taagctgcgc aaacatagtg gatacagaaa
     1381 gcagaagtac tgccataaaa atcatttttt tcatacaatt aattatttag atgaatagta
     1441 aagatagtct ttaacggttt atttggaaaa ttggtattat agtattctta aaagtcaccc
     1501 attgaggatt atgaatttta atttttgaac ttttaaattt caaatcggca gcttctggga
     1561 cttgaatcag gtattctttt ttattggaat ttgtcaattt ccggtcgcga agccatatgt
     1621 tgaaatcttt taattgataa taactcattc catatttagc tgcccatgcc gtccaatcgt
     1681 caaccgacgt ctttacagaa acaactttcg tgccaaccgt ctgatagaaa tcattgtaat
     1741 cgagcgtata accaaatgct ttcgggtttt ctaagaattg cttcatcgcc agaatacgaa
     1801 acacataccg gcttgtttcg gcgtttaaaa gcatatcaaa agattcgtcg acctgttgct
     1861 ttgcctgttc ttcagagatc cgacccatgc ccgcattgta tgatgcagca acagttgtcc
     1921 agttattata cttattataa gcgcttttaa agtacttaca tgcagcatcc gtcgactttt
     1981 caacatgata tctttcgtca atctcatcgt tcacttccaa cccaaactgc tcagcggttt
     2041 tgggcattag ttgccaaaat cctgcggcct gagctcccga aattgccctc gggtccaaat
     2101 tgctttcaat tactgtcagg tatttaaaat catcgggtat tccgtttcgc ttcagtattg
     2161 gttcaataat cgggaaatat cggttagccc gcttaattat caacatgctt acagaatgat
     2221 tataagcaat aactatctgt tcgcgatcaa aacgctcgcg catatcgtag cgctccagtg
     2281 aaattgtttg cccggcaaac tcaacttttg tcggaattgg aaaggaaaaa acaggttcta
     2341 tagaaaaagc agtctgcaaa agacaaccgc acaaaagtaa aatcaggctt attttatttc
     2401 tcatca
//
LOCUS       DATDNM010000316         3729 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1748928, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000316 DATDNM010000000
VERSION     DATDNM010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3729
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1748928"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2227)
                     /locus_tag="VI413_05320"
     CDS             complement(<1..2227)
                     /locus_tag="VI413_05320"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEY6914077.1"
                     /translation="MKKYTFLFLVIVFVFSFVISSIFTLHAENGFHAYKLKAGHAGIS
                     CDKLSFTEKSLTLELWLNLDAGSNIDKANIASTMGDGKTGFILSLRQNAAHANAMEIR
                     FLAKTPSQATIPLFLPMNEFVGKWGHMAFVISETEGKAYSYLNGELYQTIDAAGGWIG
                     NNATTNLEIGNWWSDPKPYGGIADFRIWKTARTAQEIKENYNKHLKGANSGLYINYTF
                     SSYNRTIANEVSSGNHGLCNPELGWQNYFGIETLAQAPVNISVNQNTLSWGGNNTLTV
                     DPGVSGNYMMNIEPETQKMLRNPLTGWVIYGSPSAAADFWTKYDNMAVATMNNTVKVS
                     DYATTLYIRTSWSVLNPAENIYGWDTDEGLKNLISQARQRGLKLAFRVVVDSRDKSSD
                     FSPAYVKAAGAQGFTSGTNNARWTPYPDDPVFQEKYTKFVKAFAQKFNDPDVVEFIDG
                     YGLGKWGEGHSMKYLNSANRESVFKWIVDLYVEEFTKIPLLINYHRLIGAELEWGSAD
                     PKSEELLDYAANKGFSLRHDAYGMTTYYGAWEKKYAAKWNFKRPIIMEGGWVTAQHDI
                     TVDPRGYQTITDVRKGEYDDSQVARVNMMDFRINETATWFSDVFYLVNGFISDGGYRL
                     YPGKLSLPQDITPASQVKIAHQWNNLGWGYCPTNIPQWNQKYKVAFGLLDENDKVIAT
                     FVDEQTDLSKWIKGIPVSYEFYPQINGIQTGKYTWAVAIVDKTKNNAKGINIAAKGNI
                     SA"
     gene            complement(2415..2915)
                     /locus_tag="VI413_05325"
     CDS             complement(2415..2915)
                     /locus_tag="VI413_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914078.1"
                     /translation="MRKTDLLSFIIVVSLAVWTNVLATQAQTSSASSDVWEVEIVKKN
                     TNEVVVNEIVAINSLPLKGLEQNTEYFARVRTKSFVYSGWATSDVFTYNSTTEITQNN
                     FNKKFVVRSEKGCLIISSYFPQHINIYSINGCLIRSVAIVNGEIVVDGLEKGIYLANN
                     RKVIVE"
     gene            complement(2971..>3729)
                     /locus_tag="VI413_05330"
     CDS             complement(2971..>3729)
                     /locus_tag="VI413_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019150063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914079.1"
                     /translation="DVVIVCLGEKKDWSGENASRSTLSLPEIQEKLVIELKKAGKPVI
                     LLLSNGRPLELNRLEPLADAMLEIWQPGIMTGKAVAGILSGRVNPSGKLAITFPYSTG
                     QIPIYYNLRKSARPHQGKYQDIQTTPLYEFGHGLSYTTFEYGDIKANSQKVKNGDKLM
                     VEIPVTNTGDRPGMETVHWFIADPVCSISRPIKELKYFEKQALAKGETKVFRFEIDIN
                     RDFSFVDSQGNRFVEPGDFYVIVKDKKIKIELVD"
BASE COUNT         1076 a          821 c          652 g         1180 t
ORIGIN      
        1 aagcggaaat attccctttt gcagctatgt ttattccttt tgcattgttt ttggtcttat
       61 caacaatagc cacagcccag gtatatttac cggtttgaat tccatttatt tgtgggtaga
      121 attcgtacga aacaggaatc cctttaatcc atttcgataa atcagtctgt tcatctacaa
      181 aagtggcaat caccttatca ttttcatcca atagcccaaa agccactttg tatttttgat
      241 tccattgtgg aatgttggtc ggacagtatc cccaacccaa attattccac tgatgtgcaa
      301 ttttcacttg agaggcaggc gtaatatcct gaggcaaaga caatttgccc ggatacaaac
      361 gataaccccc atccgaaata aatccgttga ccagataaaa aacatcggaa aaccaggtgg
      421 cagtttcatt gattctgaaa tccatcatat tcaccctggc tacctgcgaa tcatcatatt
      481 cacctttcct gacatcagta atagtctgat acccgcgtgg atcgacagta atatcatgtt
      541 gagctgtaac ccagcctcct tccataatga tcggacgttt aaagttccat tttgcggcat
      601 attttttctc ccatgctcca tagtaggttg tcataccata ggcatcatgt ctgaggctaa
      661 agcctttatt agcggcatag tccaatagtt cttccgattt aggatcagca gaaccccact
      721 ccagctcggc acctatcaag cggtgataat taatgagtaa cgggattttt gtgaattctt
      781 ccacatataa atccactatc catttgaata cactttcacg gttcgcgctg ttgagatatt
      841 tcatggaatg accttcgccc cactttccaa gtccataacc atcaataaat tcaaccacat
      901 ctggatcgtt aaacttttgt gcaaatgctt ttacaaactt ggtgtatttt tcctgaaaaa
      961 ccggatcatc cggataaggt gtccagcgag cattattagt accggaagtg aaaccctgtg
     1021 caccagccgc tttcacatac gcaggtgaaa aatcgctgct tttatcacga ctatcaacca
     1081 ctactctaaa agctagtttt aaaccccttt gccgggcctg ggaaattaaa tttttcaacc
     1141 cttcgtcggt atcccaaccg tatatattct ctgccggatt caaaacactc caactggtac
     1201 gaatgtaaag tgtagtagca taatcggaaa ccttaactgt attattcatt gtcgcaacag
     1261 ccatgttgtc atactttgtc cagaagtcgg ctgctgcact cggacttcca taaatcaccc
     1321 agccagtaag cggatttcgc aacattttct gcgtctctgg ttcaatgttc atcatataat
     1381 tgccagaaac acccggatcc accgtcagtg tattattccc tccccaggat aaggtgttct
     1441 gatttactga gatattaacc ggtgcctgag caagagtttc gataccgaaa taattttgcc
     1501 aacccaactc gggattacat agaccgtgat ttcctgaact cacctcatta gcaatcgtac
     1561 gattatagct tgaaaatgta tagtttatgt atagccctga attggcacct ttcaaatgct
     1621 tattataatt ttcttttatt tcctgagctg tacgggcagt tttccagata cggaaatcag
     1681 ctatacctcc gtatggctta ggatcgctcc accaattgcc aatttccaga tttgtggttg
     1741 cattattgcc aatccaccct ccggcagcat caattgtttg ataaagttca ccgttcaggt
     1801 atgaatatgc tttaccttct gtttctgaaa taacaaaagc catatgcccc catttcccaa
     1861 caaactcatt cattggcaaa aacaaaggaa tggttgcctg cgacggagtc tttgccaaaa
     1921 accgtatttc catagcatta gcatgtgctg cattttgcct gagactcaat ataaatcccg
     1981 ttttaccatc tcccatggta gaagcaatat tggctttgtc aatattggaa ccggcatcca
     2041 gatttagcca tagctccaga gtcaatgatt tttctgtaaa tgacagctta tcgcatgaaa
     2101 ttccggcatg tcctgctttc aacttatagg catgaaaacc attttctgcg tgtaaagtaa
     2161 aaattgatga tattacaaat gaaaaaacga acactattac aagaaacagg aaagtatact
     2221 ttttcataat atgatttaag tttttaccag tataaaatca aagagtgaat aaattcgaat
     2281 aactatgtgg caaagatatc cgaagtgtac atacagaggg ttatcgattt attcagaaat
     2341 agtttcagtt tgtacaggat gactaaaaag tactgtagat gctgtatatt agctgacaat
     2401 aaaaaggatt aatctcattc cacaataact ttccggttgt ttgcaaggta aattcccttt
     2461 tcgagtccat cgacaacaat ctctccattt acaattgcga cggagcgaat taaacaccca
     2521 ttaatgctat agatgttaat atgctgagga aaatatgagg aaataatcag gcatcctttt
     2581 tcagaacgaa cgacgaattt tttattgaaa ttattttgtg tgatttcggt tgtagaatta
     2641 tacgtgaaaa catccgatgt tgcccacccg gaataaacaa aactttttgt tcttacccgt
     2701 gcaaaatact cagtattttg ctccagtcct ttgagaggta atgagtttat tgccacaatc
     2761 tcatttacaa ccacttcatt tgtatttttc tttactattt ccacctccca aacatcactt
     2821 gatgcactgc ttgtttgagc ttgtgttgct aaaacatttg tccacacagc caaagaaact
     2881 actattataa aagataaaag gtcagttttt ctcataatat atttttaagg tgattttttc
     2941 tattttaaga agcctgctta ttcaaaacat ttaatcaaca agttcaatct tgattttctt
     3001 gtcttttacg attacgtaaa aatcaccggg ctccacaaag cggtttccct ggctatccac
     3061 aaaactgaaa tcacggttga tgtctatttc gaagcggaat actttggttt ctccttttgc
     3121 caatgcttgt ttttcgaagt atttaagttc ttttattggt cttgaaattg aacataccgg
     3181 atcggcaata aaccaatgta cagtttccat tccaggtcta tcgccggtat tggttaccgg
     3241 aatttccacc atcagtttat ctccattttt taccttttgt gaattagctt taatgtctcc
     3301 gtattcaaaa gtggtataac ttaagccatg accaaattcg tacaatggcg tggtctgaat
     3361 atcctgatat ttaccctgat gcgggcgtgc actcttgcgg agattgtaat aaattggaat
     3421 ttggcctgtg gaataaggaa atgtaatggc aagctttcca gaaggattta cccgaccact
     3481 aagtattccg gctacggcct ttccggtcat aatgcccggt tgccaaattt ccagcatggc
     3541 atcggctaaa ggttccaagc ggtttagttc gagtggccgt ccgtttgaga ggagcagaat
     3601 aaccggttta cctgcttttt tcaattctat aaccagcttt tcctgtattt caggcaatga
     3661 caaagtagaa cgcgatgcat tttcaccact ccagtctttt ttctctccca ggcaaactat
     3721 aaccacatc
//
LOCUS       DATDNM010000317         3348 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_894909, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000317 DATDNM010000000
VERSION     DATDNM010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3348
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_894909"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3112
                     /locus_tag="VI413_05335"
     CDS             <1..3112
                     /locus_tag="VI413_05335"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6914080.1"
                     /translation="ESMGVNKLSFSKRNIQSLFPDPENALKSGNVIKAFLEDKNRNIW
                     VSTKAGNLYLYDPTLKNKKTIFENGSNVYSMYQDNIGTIWVGTKRSGIIEIPDGKLSK
                     AKYYLNSGKQGSLSNNTVFSLTKDRKDRLWAATFGGGVCVKTSSEGNESFRTFFNDDM
                     WIKFTRYVFLDRNGDLWVATTNGVLRFNPDALLKNRKAYKYYTFDVDSKNCLSNPEVR
                     YIFQDSKGSIWLATAGGGVNKFIGETPSGNGIFEVYNNQQGLATDNIMGIQEDKSGCL
                     WISSENGLHKFNPKTKLFQYYKFSDNFSANIYSEAACLTCSDGKMLWGSLNGFYAFYP
                     KDLELKKKETNTVVLTGFSIYDQDAKIDKKNAPLEQSVSFSENVVLKSSDKVFHIEFS
                     NLNFRDPKANQFMYILENYEKRWNLSGSLNMATYRNVPPGKYTFMVKSVNSEGVWDDN
                     VTKLEIEILPPFWQSNWAILIYLVLLSAAGYFAYNLILKFYRLNNAVKVERQLTDYKL
                     RFFTNISHEFRTPLTLIKGSVDTLNELKNKMTEPMQHLVGDLDKNTSHLLRLIDQLME
                     FRKLQNNKQKLNLQRADAIIFLKEIYNSFSNVASKMNIEYRFLNSVNTIPIYLDKNKV
                     DKIVFNLLSNAFKFTPRGGKISLIVETDEAKQILRISVNDNGIGIPKEKQNLIFSRFM
                     QINFSATGTGVGLSLVNEFTALHKGTVNFKENEGGGSIFTVELPLNSTAYNTDDFVNE
                     QVVVSKDNKQEIYNLSEFIEQNNHEILLNLLPNAPIAGKKYKILVIDDNDDIRDFLTE
                     KLNPHFEVITAEDGNVGIKRSMEDDPDLIICDVMMPGMNGFELTKKLKDDFATCHIPV
                     ILLTAYISDEHHTEGIEAGADAYISKPFSMSHLMLQINKLIEKRERLNKHYASNESPE
                     VVKDENEIEMPDRDSQFLKLVEELLEKHLTDPEFSVDEFAQMTNTGRTLFFKKIKYLT
                     GYSPNEFIRFRRMIKAADLLKTYKYNVSEVSYMVGINDPFYFSKCFKSQFGCSPSRYL
                     NSQQQH"
BASE COUNT         1163 a          648 c          624 g          913 t
ORIGIN      
        1 agaaagcatg ggagttaaca aactctcatt ttcaaaacga aatatccaaa gccttttccc
       61 tgatcctgaa aacgcattaa aaagcggcaa tgtaatcaag gcttttcttg aagataaaaa
      121 ccggaacatc tgggtttcga ccaaagccgg caatctatac ctgtatgatc caaccctaaa
      181 aaacaaaaaa acaattttcg aaaacggatc gaatgtgtac agcatgtacc aggataatat
      241 tggaaccatt tgggtgggaa caaaaagaag tggcatcatt gaaattccgg atggaaaact
      301 ctccaaagcc aaatactact taaactcagg caaacagggt tctttaagta acaataccgt
      361 attctcgctt acaaaagacc gtaaagacag actttgggca gccacatttg gcggcggagt
      421 gtgcgtgaaa acttcttccg aaggaaatga aagtttccgc acatttttca atgacgatat
      481 gtggattaaa tttacccgct acgtatttct ggaccgaaac ggcgacttat gggtggcaac
      541 tacaaatgga gttcttcgtt tcaaccctga tgcactgctt aaaaaccgga aagcttacaa
      601 atactacaca tttgatgtcg acagcaaaaa ttgccttagc aaccctgaag tccggtatat
      661 atttcaggat tcgaaaggaa gtatatggct tgctactgcc ggcggaggcg ttaacaaatt
      721 tataggagaa actccaagtg gaaatgggat ttttgaggtg tacaacaacc agcaaggatt
      781 ggctaccgac aacattatgg gtatacagga agacaaaagt ggctgcctgt ggattagttc
      841 ggaaaatgga ttgcacaagt ttaatccgaa aaccaaatta tttcagtatt ataaattctc
      901 agataatttt tcagccaata tttactccga agcagcttgt ttaacgtgta gcgatgggaa
      961 aatgctttgg ggaagcctga atggatttta tgcattttat ccgaaagatt tagagctcaa
     1021 aaagaaagaa acaaataccg ttgtacttac cggattttct atttatgatc aggatgcaaa
     1081 aatcgataaa aaaaacgcac ctttggaaca atctgtttcg ttctcggaaa atgttgttct
     1141 gaaatcatct gacaaggttt ttcatattga attttccaac ctgaacttca gggatccgaa
     1201 agccaatcaa ttcatgtaca ttcttgaaaa ctatgaaaaa cgatggaacc tttccggctc
     1261 actgaacatg gctacataca ggaatgttcc tcccggcaaa tatactttca tggtaaaaag
     1321 tgtcaatagc gaaggcgttt gggatgataa tgtcaccaag cttgaaatcg aaattctacc
     1381 gcctttctgg caatctaact gggcaatctt aatttacctg gtactattga gtgctgctgg
     1441 gtattttgcc tacaacctga tattgaagtt ctaccgatta aacaatgcag tgaaagtaga
     1501 acgtcaactg accgattata aattacgttt tttcaccaat atcagccacg aattccgcac
     1561 accgctcaca ttaataaaag ggagcgttga cacactcaat gagttgaaaa acaaaatgac
     1621 tgaacccatg cagcatttgg ttggcgatct ggacaaaaat acgtcccatc tgctcagact
     1681 tatcgaccaa cttatggaat ttcgtaaact gcagaacaat aagcaaaaac ttaatctgca
     1741 acgggccgac gcgattatat tccttaagga aatatacaat agcttcagta atgtggcttc
     1801 aaaaatgaat attgaatacc ggtttctaaa ctctgtcaat accattccta tctatctcga
     1861 caaaaataaa gttgataaaa tagtcttcaa tttactctcc aatgctttta aattcactcc
     1921 acgtggtgga aaaatttcat tgatagtaga aacagatgaa gcgaaacaaa tcctgcgcat
     1981 atccgtaaat gataatggta taggtattcc aaaagagaaa cagaatttga tattcagcag
     2041 gtttatgcaa ataaattttt ctgcaaccgg aacaggtgta ggactttcac tcgtgaatga
     2101 gtttaccgcg ctacacaaag gaaccgtaaa ttttaaagaa aatgaaggag gtggctctat
     2161 ctttacagta gaattaccgc taaacagcac ggcctacaac actgatgatt ttgtaaatga
     2221 gcaggttgtt gtttcaaagg ataacaaaca agagatatat aatctctcag aatttattga
     2281 gcaaaacaac cacgaaattc ttctgaactt attgccgaac gcacctattg ccggtaagaa
     2341 atacaagata cttgtcattg atgataatga cgatattcgc gattttctga ctgaaaagct
     2401 aaatccacat tttgaggtga taactgctga agatggcaat gttggtataa aaagaagcat
     2461 ggaagatgat ccggatttga taatctgcga tgtaatgatg cccggcatga atggttttga
     2521 attgacaaaa aaactaaaag acgattttgc aacctgccat attcccgtta ttttactgac
     2581 agcctatatc tctgacgaac atcacaccga aggtatcgaa gcaggagcag atgcatatat
     2641 cagtaaacct ttcagcatgt cgcacttaat gcttcaaatc aataaactga ttgaaaaacg
     2701 cgaacgttta aacaagcatt atgcaagcaa tgaatcaccc gaagtggtga aagatgaaaa
     2761 cgaaattgaa atgccagaca gggacagcca attcctcaaa ctggttgaag agttgctcga
     2821 aaaacatctt acagatccgg aattctcggt agatgaattt gcccaaatga cgaataccgg
     2881 gcgaacgctg ttcttcaaaa aaatcaaata cctgaccggt tattcaccca atgaatttat
     2941 ccgtttccgg cgaatgataa aagctgcaga ccttttgaaa acctacaaat acaatgtatc
     3001 ggaagtatcg tatatggttg gaataaacga cccgttctat ttcagcaaat gttttaaatc
     3061 acagttcggt tgttcaccat cccgatatct gaattcgcaa caacaacatt aatttcggat
     3121 tacactaaat taagcaatgc gcctgacaag tattagaact tgtcaggcgc attgtttttc
     3181 agccagttac aaccaacact acattcacat tttttcatcc atttataaat atattctaaa
     3241 aaatggataa aaatctatac aaacgcataa aattccattg taccggttca ggcaattcag
     3301 tttttttgta aaattatttc atgtcagaaa aacaatcaaa aatctatt
//
LOCUS       DATDNM010000318         3081 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1963388, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000318 DATDNM010000000
VERSION     DATDNM010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3081
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1963388"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..361)
                     /locus_tag="VI413_05340"
     CDS             complement(<1..361)
                     /locus_tag="VI413_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007210479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PorV/PorQ family protein"
                     /protein_id="HEY6914081.1"
                     /translation="MKNNLLALCILLSLSISAFAQSDNNPILTAVPSLSIAPDARAGG
                     MGDVGAATTPDVNSQYWNPAKYVFMESDAGVSLSYTPWLRKLVADIDLAYLAGYWKLD
                     QSQAVSASLRYFSLGDIS"
     gene            complement(443..>3081)
                     /gene="porU"
                     /locus_tag="VI413_05345"
     CDS             complement(443..>3081)
                     /gene="porU"
                     /locus_tag="VI413_05345"
                     /inference="COORDINATES: protein motif:HMM:NF033707.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type IX secretion system sortase PorU"
                     /protein_id="HEY6914082.1"
                     /translation="GDNYEQAKAANGIFTFTPQDGNFIFNVTYTKSATTSVGYLNYLE
                     VNARRQLKMVGAEMQFQNVDFLSTGTYNQYQLSDANSNIQIWDITDQQNVSKMATTTN
                     NGKMTFVDSANELKNYIAIDPTAKNSFLTPEVVGVVPNQNIHGIAQADMVIITHPNFL
                     VQSQTLAQAHREKDNLTVEVVTTDQVYNEFSSGTPDATAYRWVMKMLYDRAIAANNTS
                     DMPKYLLLFGKGSFDNRKITSNSGDNFVLTYEAENSLTTTLSYVTDDYFALLDDNEGT
                     QVPSNLMDIGVGRFTVSTQQQATDVVNKTIDYMNNQQKGNWKNQVCFVADDGDGALHM
                     KQADSIAVSIARNFPAYQVNKIYLDAFLQEITASGESYPLAKSKLLNLIRSGLFVLNY
                     TGHAGPIGWSNESILTAADVKSLSNKNLPLWVAATCDFVQFDVQTQSAGEQVVFNQVG
                     GGIGILAAARPVYASQNFTLDKLFCENLFKSKNGEHMRVGDVIAYTKNNIGTEINKLS
                     YVYVGDPAIRLNYPTKYNVITNKINESTTFGNDTLRALSVANVQGYIADDNGAKIETF
                     NGSVHAVIYDKVQRFTTMDNEKDGTLTYSDRPNILFSGNAEVKNGVFSLSFMLPKDIK
                     YNYGGGRINYYAHDELNNDEAQGYFENFVIGGTDTNNISETNGPTVDLFLNSENFVSG
                     NKVNETPLFIANVSDINGINTVGSGIGHDLMLTIDQDPLQSFVLNDYFLAKENSYTDG
                     AVKYKLPEMKNGKHTLTFRAWDLLNNSTTSTLNFEVVKGLTPTIFNVYNYPNPVKNHT
                     NIVVEHDRPETVLGTTVEVFDLSGRKVWSFSQSSADNITWDLVTNDGKKVKTGVYFYR
                     VNIKTANSDIFSKTNKMLIVEQ"
BASE COUNT          929 a          590 c          544 g         1018 t
ORIGIN      
        1 agctaatatc tccaagggaa aaataccgta atgaagcact cacagcttga ctttgatcta
       61 atttccaata tccggcaaga taagccaaat cgatatcagc aaccaatttt cgtaaccatg
      121 gagtgtaaga caatgataca ccagcatcac tttccataaa aacatattta gccggattcc
      181 aatattgtga gttcacatcg ggagtcgttg cagcaccaac atcgcccata ccgccagcac
      241 gagcatcggg ggcaatagat aatgatggaa cggctgtaag gatcggatta ttatcgcttt
      301 gagcaaaagc gctaattgaa agtgacagta aaatgcacag tgctaaaagg ttattcttca
      361 ttcggaaatt ctattttttt tgagagtaca ataatactaa aattaaacaa gaaattaaat
      421 aaataaacgc agaattttga ttttattgtt caacaatcaa cattttattg gtttttgaaa
      481 agatatcgct attggctgtt ttgatattta ctctataaaa gtaaaccccg gtttttacct
      541 ttttgccatc attggttaca agatcccaag taatattgtc agctgatgac tgagaaaaag
      601 accatacctt gcgtccggat aaatcgaaca cttcaacagt tgtaccaagt acagtttcag
      661 ggcggtcatg ctctacaact atatttgtgt gattttttac aggattagga taattgtaaa
      721 cgttgaaaat cgttggtgtt aatcctttaa ctacctcgaa attgagagtg cttgtagttg
      781 agttgtttag tagatcccaa gcacggaaag taagtgtatg tttcccattt ttcatctcag
      841 gaagtttgta tttcactgcc ccatccgtat agctgttttc ttttgctaaa aagtaatcat
      901 taagaacgaa tgattgtaaa ggatcctgat ctatagtcaa cataagatcg tggcctatac
      961 cacttcccac tgtatttata ccatttatat ccgaaacatt tgcaatgaaa agtggagttt
     1021 cattcacttt gttaccggat acaaagtttt cagagttaag aaataaatct actgtaggac
     1081 cattcgtttc actaatatta tttgtgtctg ttcctccaat aacaaaattt tcgaaatacc
     1141 cctgagcttc atcgttattg agttcgtcat gagcataata atttattcga cctcccccat
     1201 aattatattt tatatcttta ggcaacataa acgacaggct gaatacacca ttttttactt
     1261 cagcatttcc agaaaacaat atgttcggac ggtcagaata tgtcaatgtt ccatcttttt
     1321 cattgtccat tgttgtaaaa cgctgtactt tatcataaat aacagcatga actgagccgt
     1381 taaaggtttc aattttagct ccattgtcat cggcaatata accctgaaca ttagcaacag
     1441 ataacgccct gagtgtgtca ttgccaaatg ttgtgctttc gtttattttg tttgtaatta
     1501 cattatattt tgtcgggtag ttcagtctta ttgcagggtc acctacatac acgtatgaca
     1561 atttgttaat ctcggttccg atgttatttt ttgtataagc aattacatcg ccgacacgca
     1621 tgtgttcacc atttttactc ttgaataaat tctcacaaaa caatttatca agggtgaaat
     1681 tttgagatgc ataaactgga cgggctgcag ctaaaatacc aataccaccc ccaacttgat
     1741 taaaaacgac ttgttctcca gctgattgtg tttgtacatc aaattgtaca aagtcacaag
     1801 tggcagctac ccataatggt aggtttttgt ttgacaatga ttttacgtca gctgctgtta
     1861 atatagattc atttgaccaa ccaattgggc cagcatgacc agtatagttg agaacaaata
     1921 atcccgatct gattagattt aataatttgc tttttgctag tggataactt tcgccactag
     1981 cagtgatttc ttgtaaaaaa gcatccagat atattttatt aacctgatat gcgggaaagt
     2041 ttctggcaat tgaaacagca atactatctg cttgtttcat atggagtgcg ccatctccat
     2101 cgtcagccac aaagcaaact tgatttttcc aatttccttt ctgctgatta ttcatgtagt
     2161 caatcgtttt gttgaccaca tcagtggctt gctgctgagt acttaccgta aaacgtccaa
     2221 caccaatatc cataagattt gatggaacct gagtaccttc attgtcatcc agcaacgcaa
     2281 agtaatcatc tgtaacataa gatagggtgg ttgtcaatga attttcagct tcgtaagtca
     2341 aaacgaaatt atcgccggaa ttactagtga tttttctgtt atcgaatgat cccttgccaa
     2401 ataataaaag atattttggc atgtcgctgg tattattggc agctatggca cggtcataca
     2461 acattttcat tacccaacgg taggcggttg catctggagt accggacgaa aattcattgt
     2521 agacttgatc agttgttaca acctcaacgg tcaaattgtc tttttcccga tgagcctgtg
     2581 ctaaagtttg cgattgcacc aggaaatttg gatgcgtaat aataaccatg tcagcttgtg
     2641 caataccgtg aatattttga tttgggacta caccaacaac ctctggtgtt aaaaacgagt
     2701 tttttgctgt tgggtctatg gctatataat tttttaattc attggccgaa tcaacaaaag
     2761 tcattttccc gttatttgtc gttgtagcca ttttgctaac attctgttgg tcggttatgt
     2821 cccaaatttg aatattgctg tttgcatcac ttaattgata ttgattatag gttcctgtgc
     2881 tcagaaaatc aacattttga aattgcattt cagccccaac cattttaagt tgacgacgcg
     2941 cattaacctc aagataattt aaatatccca cagatgtagt cgcagacttc gtgtatgtaa
     3001 cattaaatat aaagtttcca tcttgcggag tgaaagtgaa gattccgttt gcagctttag
     3061 cttgctcata attatcacca t
//
LOCUS       DATDNM010000319         3663 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_148161, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000319 DATDNM010000000
VERSION     DATDNM010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3663
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148161"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..403)
                     /locus_tag="VI413_05350"
     CDS             complement(<1..403)
                     /locus_tag="VI413_05350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914083.1"
                     /translation="MKKIIFLFIISCTLMSCEDFLDTTNKTKKDTSNYPKTSKDATEL
                     LTGVYSILGRPEPLGSSFMTSELMSDDRFGGGGPDDRSCKAIDQFKKSSDDMFNNPWK
                     AYYFGVFRSNFLISKLDEIKWDSVGSRNKVEG"
     gene            complement(427..3588)
                     /locus_tag="VI413_05355"
     CDS             complement(427..3588)
                     /locus_tag="VI413_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010800149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6914084.1"
                     /translation="MKHNRILKAGSQNRAWAMLFSLLTIFSAFSQSKTTISGTIRSGN
                     DVLIGANVLERGTKNKTITNFDGKFTLSVSPNAQLEISYLGYETKTIKIGTQSNLNIE
                     LAESSNLLNEVVAVGYGVQKKKLITGATVQVKGEDITKLSSVNVLGALQSQTPGVNII
                     KQSGKPGDGFKVTIRGLGTIGNSNPLYIIDGVPNGDINLLNPSDIESIDVLKDAASAA
                     IYGARASNGVILITTKQGKKGKASIQYDGYWGWQNIAKKTDVLNAKQYLSVMDKAGYN
                     RQYFDSNIPADILEKVDNGEFTGTNWLDEMTLKNAPIQSQAVNIVSGSDMSTFSFGFS
                     YTSQNPIIGLKNTDLKSEYDRYTVRMNSDHQLIKSKGLTLLQFGETFTMGYVNRSGLG
                     MGTGSIYWNDIRNALAGNPLLPVYNTDGSYHMPLAGLDYESTNPLADMDYLRSRVNSK
                     NYSARGSFYLTLQPIKNLKFKTNFGYAYNGWSSREYIPVYKLNTVNFSDLDKVSQGAG
                     GGLQWSWDNTLNYDFSLFRNHKFNALIGNSIEKWGLGEDVNGSNKGSQFDSYDFAYLS
                     NVKTIPNSTLYGAPWGEGGIASFFGRLNYDYQGKYMASAVMRADGSSNFARGHRWGYF
                     PSVSAGWNVAEESFFENFKDFTDQLKLRASWGENGNCNIPTFRYLSSIAFGSASNAAE
                     YYFGSDKTTPTFGSYADLIPNENLKWETSRQIDLGLDSRFLNSRLGLSFDWYEKKTMD
                     WLVQPTGLAIWGTGAPYVNGGDVLNSGIETSLSWDDKIGDFTYGIRGNVTYNQNKVLS
                     INNKDGFINGVSDIVSPNTSYLYRAEVNYPIGYFRGYKTGGIFQNQAEIDNYVYAETG
                     EKIMPTAKPGDVKFIDLNNNGKIEEGDKTMIGDPHPDITYGLTLNLGYKGFDLSVTGY
                     GVAGNQIAKSYRNWTNKPFNNYTTDILGAWNGEGTSNTIPAVNGSSINYSYISDLYIE
                     NGDYFRITNITLGYDLKKTIKFLPVSELRLYGTVQNAFTFTKYSGMDPEVGYNAGESW
                     ATGIDLGYYPSARTFMVGCNIKF"
BASE COUNT         1010 a          775 c          675 g         1203 t
ORIGIN      
        1 cgccttcaac tttatttctg ctgccaacgc tgtcccattt aatttcatcg agtttggaaa
       61 taagaaaatt gctgcgaaat accccgaaat aataggcttt ccaaggatta ttgaacatgt
      121 cgtcgctcga ttttttgaac tggtcaatag ctttacatga cctgtcgtca ggtcctcctc
      181 cgccaaaacg atcgtcggac atcaattccg aggtcataaa actacttccc aatggttccg
      241 gacgtccaag tatcgaatat actcccgtta atagttcggt agcatctttt gatgttttag
      301 gatagttact ggtatctttt ttcgttttgt ttgtagtgtc caggaaatcc tcacaactca
      361 ttaaagtaca tgagattata aataaaaata ttatcttttt catctgtttg gaatttattt
      421 ttagtatcag aatttaatat tgcaaccaac cataaatgtt cttgcactcg gataatagcc
      481 caaatcaata cctgtggccc atgactcccc ggcattatat ccaacttcag gatccattcc
      541 ggagtatttg gtgaatgtga atgcattctg aactgttcca tataaccgta attcagaaac
      601 aggcagaaat ttgattgttt tcttcagatc ataacccaac gtaatattag ttattctgaa
      661 ataatctccg ttttcgatat ataaatctga aatataactg tagtttatac tgcttccgtt
      721 cacagccggt atggtgttgg aagtgccttc tccgttccat gctccgagta tgtccgttgt
      781 ataattgttg aatggtttgt ttgtccagtt gcgatatgat ttggctatct gatttcctgc
      841 tacgccatat cctgtaactg aaagatcaaa acctttgtaa ccaaggttaa gagtaagacc
      901 ataggtaata tccgggtggg gatctccaat catggttttg tctccttctt caatttttcc
      961 attattattt aaatcaataa attttacgtc gcccggcttg gcagtcggca tgattttttc
     1021 accggtttca gcatatacgt agttatcaat ttctgcctga ttctggaaga ttccaccggt
     1081 tttatatcct ctgaaatatc ctatgggata gttcacttca gcgcgataca aataagatgt
     1141 attaggagaa acaatgtcag atacaccatt gataaaacca tccttattat tgatgcttaa
     1201 aaccttgttt tgattatatg taacgtttcc acgaatgcca taggtaaaat ctccgatttt
     1261 atcatcccag cttagcgagg tttcaattcc gctattcagt acatcaccac cattcacata
     1321 aggagctcct gttccccaaa ttgccaatcc ggtaggttga accaaccagt ccatcgtttt
     1381 cttttcgtac cagtcaaatg acaagcccaa tctgctgttt agaaaccgtg aatccagtcc
     1441 aaggtcgatt tgtcgcgatg tctcccattt gagattttcg tttggaatca aatcggcgta
     1501 tgatccaaat gttggggtcg ttttatcaga cccaaaataa tactcagctg cgtttgatgc
     1561 actgccaaaa gcgatggagc tcagatagcg gaaagtcgga atattgcagt tgccgttttc
     1621 accccaactt gcccttagtt tcaactggtc ggtaaaatct ttgaagtttt cgaagaatga
     1681 ttcttcagct acattccagc ctgctgaaac agatggaaaa tatccccacc gatgaccgcg
     1741 tgcaaaattc gatgaaccat cggcgcgcat tactgcgctt gccatgtatt tgccctggta
     1801 gtcgtaattg agccttccga agaatgatgc tattccacct tcgccccagg gagctccgta
     1861 aagtgtggag ttaggtatag tttttacatt tgataaataa gcaaagtcat aactgtcaaa
     1921 ctgagaacct ttgttggagc cgttcacatc ttctccaagt ccccactttt ctattgaatt
     1981 accgataaga gcattaaact tgtgatttct gaaaagactg aaatcataat tcagcgtatt
     2041 atcccaactc cattgcagtc caccgcccgc accttgcgac actttgtcca aatcggagaa
     2101 gtttacagta ttcagcttgt aaacaggtat atattcccgg ctcgaccaac cattataggc
     2161 ataaccaaag ttggttttga attttaaatt ttttataggt tgcagagtca ggtaaaaact
     2221 tccgcgtgca gaatagtttt tactgttaac ccgtgagcga aggtaatcca tatccgcaag
     2281 cgggttcgta gattcataat ccaggcctgc aagtggcatg tgataacttc cgtcagtgtt
     2341 ataaacaggc aacaatggat ttcctgccaa tgcattacgt atatcattcc agtaaatgct
     2401 gccggtgccc attccaagtc cactcctgtt tacatatccc atggtaaaag tttctccgaa
     2461 ctgcaataaa gttaatcctt tactttttat cagttgatga tctgaattca tacggacagt
     2521 atatctgtca tattccgact tgaggtctgt gttctttaat ccgataatag gattttggga
     2581 ggtgtatgaa aaaccaaacg aaaaagttga catatcgctg cccgatacaa tgtttacggc
     2641 ctggctttgt atgggggcat ttttcaatgt catttcatcg agccagtttg ttccggtaaa
     2701 ttctccgtta tcgacttttt caagaatatc tgcaggaata ttactgtcga agtattggcg
     2761 gttatagccg gctttgtcca ttacactaag gtattgttta gcattcagaa catcagtttt
     2821 tttggcgata ttctgccatc cccagtatcc atcgtattga attgaagctt ttcctttttt
     2881 tccttgcttg gtagtgatca atattacacc atttgaagca cgagcaccgt aaattgcagc
     2941 agaagccgca tctttcaata catctatcga ttcgatatcg cttggattca gtaggttaat
     3001 atccccattt ggaacgccat ctataatgta aagcggattt gagtttccaa tggtaccgag
     3061 tcccctgata gttactttaa atccgtcccc tggttttcca ctctgtttta taatgttcac
     3121 acctggtgtc tggctctgaa gggctcccaa aacatttaca ctgcttagtt ttgtaatatc
     3181 ttcacctttt acctgaaccg ttgcaccagt tatcagtttt ttcttttgaa ctccataacc
     3241 cacagctaca acttcgttaa ggagatttga agactctgcc agttcgatat tcaaatttga
     3301 ctgggtcccg attttaattg ttttagtttc gtagcccagg taagaaatct caagttgcgc
     3361 attgggactt acagataatg taaactttcc atcgaaattt gtaattgttt tgttttttgt
     3421 tcctctttca agtacatttg ctccaatcaa aacgtcattg ccagaacgga tggttccgga
     3481 aattgtagtt tttgattgag aaaaagcaga aaagattgta agaagagaaa aaagcattgc
     3541 ccatgccctg ttttggctcc ctgcttttag aatccgattg tgtttcatga taaatatgat
     3601 taatgataat tttgaagtga aaaaatcaga aaatttcaat atccaaaagt acttcaataa
     3661 aat
//
LOCUS       DATDNM010000320         2408 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_148162, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000320 DATDNM010000000
VERSION     DATDNM010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148162"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..580)
                     /locus_tag="VI413_05360"
     CDS             complement(<1..580)
                     /locus_tag="VI413_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA hydrolase"
                     /protein_id="HEY6914085.1"
                     /translation="MQETYKFVTAEEAASYVNNGDIIGFSGFTPAGCPKEVPTAIAKR
                     AEAFHAEGKEFKVGMYTGASTGDSLDGALARANAILFRTPYQSNKDLRSALNAERAPY
                     FDMHLSSIAPHLRFGFMPKPKFAIIEVCDITADGELVPTTGVGITPTIANLADYIIVE
                     WNKKHPKELRGFHDIFEPLDPPHRLPLSLLKPS"
     gene            944..2407
                     /locus_tag="VI413_05365"
     CDS             944..2407
                     /locus_tag="VI413_05365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HEY6914086.1"
                     /translation="MNGNDIRQLEPKALWENFYSITQVPRPSGKKEPIGTFIENFGKS
                     LGLETLRDEIGNVLVRKPATPGMENRKAVVLQAHMDMVPQKNSSVSHNFETDPINAYI
                     DGEWVTARDTTLGADNGIGLAAAMSILQSTGIPHPAIEMFVTVDEETGMHGAFGLQPN
                     FLKGDILINMDSEDEGELYVGCAGGIDGDISFRYKEVEVPEGDVALKVSLTGLKGGHS
                     GVDIHLQRANANKLMFRFLKEAVSELEARLASIEGGSLRNAIPREAFAVITVPSDTID
                     DIIDFVQECEELFIEEYKGVEDKISFTVEQVDLPAGLIPEEVQDDLINGITACPNGVH
                     RFIPELPTVVETSNNLAIIKSDGSTIVVRCLIRSSVESRKEELASMVVSVFSLAGAKV
                     ELVGGYPGWKPNLDSPILKEMTSVYENKFGKTPKVMIIHAGLECGILGTHYPKMDMIS
                     FGPTIRYPHSPDEKINIATVQKFWDFLLATLENIPTK"
BASE COUNT          719 a          446 c          550 g          693 t
ORIGIN      
        1 ccgatggttt tagcagtgat aaaggcaagc ggtgaggtgg atcaagcggt tcgaaaatat
       61 catggaaacc acgcaattct ttagggtgtt ttttgttcca ttccacaata atgtaatcgg
      121 ccagatttgc aatggtagga gtgataccaa caccggttgt aggaacaagt tcaccatcag
      181 ccgtgatgtc gcaaacttca ataatcgcaa acttaggttt tggcataaat ccgaaacgca
      241 ggtgaggagc aatagaagat aagtgcatat cgaaataagg agcacgttct gcattcaaag
      301 ctgagcgaag gtctttattc gattgataag gcgtacggaa caaaatggcg tttgcacggg
      361 ccagagcacc gtctaatgaa tcgcctgtag atgcacctgt gtacattccc actttgaatt
      421 ctttcccttc ggcgtggaat gcttcagcac gtttagcgat ggccgttgga acctcttttg
      481 ggcagccagc aggagtaaat ccactgaagc cgataatgtc gccgttgttt acatagcttg
      541 ctgcttcttc ggcggttaca aatttgtacg tttcttgcat gatcttttaa tttgcaattt
      601 attgtatgtg agtgagttgt tttatgtctt cttcgagtat ccgttccgaa aagtatcacc
      661 cggaatttga gcgcaaaatt accaataaat ttttgattga cattcaaatt ggcacactaa
      721 ttacagaaat atttcattaa ttaaaaatcg acaataaaag ctcgttttta cagtgaaatt
      781 attcttttgt tgagcctaaa agctatataa aataagcaaa tcaggattcc tccaaaaaat
      841 gtaaaaaaac agtataaaaa aaggtttttc caaaaaatat acggatattt gtagatacat
      901 tatttagaat aaatattcat tgtaaattaa taataatcag cttatgaacg gaaacgatat
      961 tcgacagttg gagcctaaag ctctttggga gaatttttac agtattacac aagttccgcg
     1021 tccatccggg aaaaaagaac cgattggaac ttttatcgaa aactttggta aatcgcttgg
     1081 tcttgaaact ttgcgcgacg aaataggaaa tgtgttggtt cgcaaaccgg caactccggg
     1141 catggaaaac cgaaaagcgg ttgttttaca ggctcacatg gatatggttc cgcaaaaaaa
     1201 cagcagcgtt tcgcataatt ttgagacaga tccgattaat gcttacattg atggtgaatg
     1261 ggttacggct cgtgatacca cgcttggcgc cgacaacgga atcggcctgg cagcagccat
     1321 gtcaattctt caatcaaccg gaattccaca tccggctatt gagatgtttg taactgtcga
     1381 cgaagaaacc ggcatgcatg gtgcttttgg tttgcaacca aattttctga aaggcgatat
     1441 tctgataaat atggattcgg aggacgaagg tgaattatac gtaggttgcg ccggcggaat
     1501 tgatggtgat atttcgttcc gttataagga agtggaagtg ccggaaggtg atgtggcatt
     1561 gaaagtatcg ttaaccggat tgaaaggtgg ccactcgggt gtcgatattc acctgcaacg
     1621 tgccaatgcg aacaaactga tgttccgttt cctgaaagaa gctgtctccg agctggaagc
     1681 ccgtttggca agcattgaag gtggcagttt gcgtaatgcc attccacgtg aggcttttgc
     1741 agtgattact gttccatcag atactattga cgatattatc gattttgtac aggagtgcga
     1801 agaattattt attgaagaat acaaaggcgt tgaagataaa atttcattta cagtagaaca
     1861 ggttgatctg cctgccggat taattcccga agaagttcag gatgatttga ttaatggaat
     1921 aacagcatgc ccgaatggtg ttcaccgttt tattccagaa ttgccaacgg tggtggaaac
     1981 ttctaataat ctggctatca ttaaatcgga tggaagtact attgttgttc gttgccttat
     2041 tcgcagttcc gtggaatcgc gtaaagaaga actggcttcg atggttgtaa gtgttttctc
     2101 gcttgccggt gccaaagttg aattagttgg tggttatccg ggttggaagc caaaccttga
     2161 ttcaccgatt ttgaaagaaa tgaccagcgt gtacgaaaat aaattcggca aaacccctaa
     2221 ggttatgatt attcacgccg gattggaatg cggtattttg ggaacccatt accctaaaat
     2281 ggacatgata tcgtttggac caaccatccg ttatccacac tcgccggacg aaaaaataaa
     2341 tatcgccact gttcagaaat tctgggattt cttattggca acgttagaaa atataccaac
     2401 taaataaa
//
LOCUS       DATDNM010000321         2480 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_41034, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000321 DATDNM010000000
VERSION     DATDNM010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41034"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..833)
                     /locus_tag="VI413_05370"
     CDS             complement(<1..833)
                     /locus_tag="VI413_05370"
                     /inference="COORDINATES: protein motif:HMM:NF040057.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative LPS assembly protein LptD"
                     /protein_id="HEY6914087.1"
                     /translation="MLLPQKQKSNQIDAEINYTAEDSIVFLGNGTGFLHGKSDIKYKK
                     IELKADFIRVKMDSSLIFARGTRDSVGAKVGEPEFSEGESKYTSRELTYNLKSKKGYI
                     RQAVTQQGEGYIISDRTKKTSDETLCIAGGKYTTCDNHDHPDFYLSLSKGKVKPGSYI
                     VAGPAHLVIEDVPLPIAVPFGFFPFTDKYSSGILMPNFEDELNRGFGLTNGGYYFAFN
                     DYMDMEFRGDVYTKGTWSLNATSTYRKRYKYSGNFNISYREDVTGEKDMPDYNKANNM
                     S"
     gene            1197..>2480
                     /locus_tag="VI413_05375"
     CDS             1197..>2480
                     /locus_tag="VI413_05375"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: protein motif:HMM:NF013670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEY6914088.1"
                     /translation="MKFIKKYVLVSHCYLLLIALLLTTSLLAQDARFTVVIDAGHGGH
                     DPGAMGAISREKDINLDISLDLGAIIEQKYKDVKVVYTRKTDKYLTLQERADVVNNNH
                     ADLFICVHTNSAQSPSAYGAESFTLGLAKTKANLDVAMRENSVITLEENYKAKYQGFD
                     PNSVDSYIMFEFMQDKYIDRSVDFASTIQKQFRNYCNRSDRGVRQAGFWVLHRSACPS
                     VLVEVGFISNPAEERYLSSDQGQKEMATAIFNAFVDYKRDHDKKSGRQIASVSKIEPA
                     AKAEFPTKNDLKSEIQDSTPQKQQSVANQTDSQLKSENQVQNGVQLQQKQAETKNSKV
                     DLNTVFKPAKEEPKKQNISSLPVFKVQILASTKKLKTNAPEFKGAKNIDSFVEGGYTK
                     YTVGSDTDYSKIEMIRTEVLGKFPEAFIIAFVGDKK"
BASE COUNT          775 a          470 c          464 g          771 t
ORIGIN      
        1 atgctcatgt tatttgcttt gttgtaatca ggcatatctt tttcgccggt aacatcttca
       61 cgataactaa tattgaaatt accactgtat ttgtatcttt tccggtatgt cgaagttgca
      121 ttaagagacc atgttccctt ggtatatacg tcaccacgga attccatgtc catgtagtcg
      181 ttaaaggcga aataataacc tccgtttgtc aacccaaatc cccggtttaa ttcatcttcg
      241 aaattaggca ttaatatacc cgatgaatat ttatcagtaa aagggaaaaa tccgaatggt
      301 actgctatag gtaacggaac atcttcaata accaaatgcg cgggaccggc cacaatataa
      361 cttcccggtt tcactttccc tttcgacagg ctcaggtaaa aatccggatg atcgtgattg
      421 tcacaggttg tatatttacc acctgcaatg cagagggttt catcagaagt cttttttgtg
      481 cggtcgctga taatatagcc ttcgccctgc tgagtcacgg cctgacggat atatcctttt
      541 ttagatttta gattatatgt cagttcgcgg gaagtgtatt tcgattcccc ttcgctgaat
      601 tcaggttcgc ctacttttgc tccgacactg tctctggttc cacgggcaaa aatcaaacta
      661 ctatccattt ttacccggat aaagtcagct ttcaactcta tttttttgta ttttatatca
      721 cttttgccat gcaaaaatcc cgttccattg cccagaaaaa caattgaatc ctcagcggta
      781 tagtttattt cggcatctat ttggtttgat ttttgttttt gaggaagcag caaatttaaa
      841 gagtcggtga ctgcttttga cagagtgtca cttttaaacg tgcttttttc actgtttatg
      901 gatgcacctt tctcttggca gaaacccgaa atgggaaacg ctaaccacaa aaagagaagc
      961 aaatacaatg gtgatctgct gaaatatagt cggttacaga tttgcatccg gtaggttctg
     1021 gatttcttaa attagagtgc aaatttagtc aaaaaatagc agtctcattt atatataacc
     1081 tttttttatg aataatttga aaatttacaa cttgctatag tatcataaac acgataaaaa
     1141 tgattacttt tgcacaaaaa tacgcagtta attcctcctc aaacaacgga atttatatga
     1201 agtttataaa aaagtatgtt cttgtttctc attgttattt gttgttaata gccttgttgc
     1261 tcacaacttc attattagct caggatgcaa gatttactgt tgtaattgat gccggacatg
     1321 gcggccatga tcccggagct atgggagcta tttcacggga aaaagatatc aatttagata
     1381 tatcgcttga tttgggtgca attatagaac aaaagtacaa agacgtaaaa gttgtttata
     1441 cccgaaaaac agataaatat ctcactttac aggagcgggc agatgtcgta aataataatc
     1501 atgccgattt gtttatttgc gtacacacta attctgctca aagtccatcg gcttatggag
     1561 ctgagagttt tactctcggg ttagccaaaa ccaaggctaa tttggatgtc gccatgcgcg
     1621 aaaactccgt aatcacactc gaggaaaatt acaaagcaaa gtaccaggga tttgacccca
     1681 attctgttga ttcatacatt atgtttgaat ttatgcagga taaatatatc gacagaagtg
     1741 tagatttcgc atctacaatt caaaagcaat ttcgcaatta ttgcaatcgt tccgaccgtg
     1801 gtgttagaca ggctggcttt tgggtactgc atcgttcagc ttgccccagc gtcttagtcg
     1861 aagtgggttt tatttccaat ccggctgaag agcgttattt gtcttctgat caggggcaaa
     1921 aagaaatggc aacagctatt tttaatgcat ttgttgatta taaacgggat catgacaaga
     1981 aatccggccg tcaaatagct tctgtatcaa aaatagaacc agctgctaaa gctgaatttc
     2041 caactaagaa tgacctgaaa tctgaaattc aggattcaac tcctcagaaa cagcaatctg
     2101 ttgcaaatca aacggattct caattgaaat ccgaaaacca ggttcaaaac ggagttcaat
     2161 tacagcagaa acaagccgaa acgaaaaact ccaaagtgga tttaaatacc gtttttaaac
     2221 cagcaaaaga agaacctaaa aaacagaaca tttcttcact acctgtgttt aaagttcaaa
     2281 ttttagcttc tacaaaaaaa ctaaaaacga atgcaccgga atttaaggga gcaaagaata
     2341 tagattcttt tgttgagggg ggctatacca aatatactgt tgggtctgat actgattatt
     2401 ccaaaataga aatgattagg actgaagttc ttggtaaatt tcccgaagca tttattatag
     2461 cttttgtagg agataaaaaa
//
LOCUS       DATDNM010000322         2249 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_41166, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000322 DATDNM010000000
VERSION     DATDNM010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41166"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VI413_05380"
     CDS             complement(<1..806)
                     /locus_tag="VI413_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEY6914089.1"
                     /translation="MAKMEKNTEAKSTFNSSLGVGGSVRRIGKQTWIDIREYIFIAAG
                     LFLYAGAWKAFLLPHQITGGGVTGIGALVYYATGLPISITYFSINAVLLLIAIQSIGL
                     KFSLRTIYGVGVMTFFFSILPQAVPGTFVGVDDNFMACVIGGLLSGAGVGIVFLANGS
                     SGGTDIIAKVVNKHRNVTLGRILLYCDVLIICSSYFLEIGSLERIVYGLTAMAISTIA
                     VDMVINGVRQSVQFFIFSKEYEAIATRINLDVHRGVTILEGMGWYSKEPV"
     gene            complement(865..>2249)
                     /locus_tag="VI413_05385"
     CDS             complement(865..>2249)
                     /locus_tag="VI413_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004308438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY6914090.1"
                     /translation="ALGRVKVNFRLRDAIFSRQRYWGEPFPVYYKEGMPYMLDESKLP
                     LELPEIDKFLPTEKGEPPLGRAKNWETEDHFPLELCTMPGFAGSSAYYLRYMDPKNDK
                     ALVSPEANQYWRNVDLYIGGTEHATGHLIYSRFWNKFLFDLGLVCEDEPFKKLINQGM
                     IQGRSNFVYRIKDTNTFVSLNLKDQYETTQLHVDVNIVSNDILDTEKFKNWNPEYKTA
                     EFILEDGKYHCGWAVEKMSKSMYNVVNPDDIVERYGADTLRLYEMFLGPLEQSKPWDT
                     NGIDGVHRFLKRLWSLFYKDGNLLVSAETPTAEELKTLHKTIKKITFDIENFSYNTSV
                     SAFMICVNELFTLKCSKKEILEPLAILLAPFAPHIAEELFHVLGNTGTVCDAAFPICN
                     EEYLKESAIKYPISFNGKVRFMLELAADMSKEDVEKTALANEQTIKQLDGNSPKKVIV
                     VPGKIVNIVM"
BASE COUNT          708 a          509 c          364 g          668 t
ORIGIN      
        1 ttaaccggct ctttcgaata ccaacccatt ccctccaaaa tggttactcc acgatgaaca
       61 tctaggttta tacgggttgc aattgcctca tattcttttg aaaatataaa aaactgaacc
      121 gactggcgaa ccccgtttat aaccatatct acagcaatgg ttgaaatagc catagcagtc
      181 agaccataaa caatacgttc caaactaccg atttcaagaa aatatgatga gcaaataatc
      241 agcacatcac aatatagcaa aatacgcccg agtgtaacat ttctgtgttt atttacaact
      301 ttagcaataa tgtcggttcc gccggaactt ccgtttgcca gaaatacaat accaactccg
      361 gcacctgaaa gcaacccacc aattacacag gccataaaat tatcgtccac gccaacaaaa
      421 gtacccggaa ctgcttgtgg caaaatggag aaaaagaaag tcattactcc tacaccatat
      481 atcgttctca agctaaattt gagcccaatc gactgaatag caatcaatag cagaacagca
      541 ttaatggaaa aatatgtaat ggaaatagga agacctgtgg catagtaaac caatgcccca
      601 ataccagtta caccacctcc cgtaatttga tgaggcaaca gaaaagcctt ccaggctccg
      661 gcatacaaaa acaatccggc agctataaaa atatattcgc gaatatcaat ccaggtttgt
      721 ttcccaattc tccgtacact gcccccaact cctaaagaag agttgaaagt acttttggct
      781 tctgtatttt tttccatctt agccataaaa caaaagatta aattgacctc gcagatttgt
      841 ttacttttag ggtaagtaat ctgattacat cactatattt acaattttcc caggaactac
      901 tatcactttt ttcggtgaat ttccgtccaa ttgttttatt gtttgttcgt ttgctaaagc
      961 cgttttttcc acatcttctt tactcatgtc agctgccagt tccaacataa aacgaacttt
     1021 gccattgaat gaaattggat attttatagc agactctttc aaatattctt cgttacaaat
     1081 tgggaaagct gcatcgcaca cagttcctgt attaccaagc acatggaaca actcttcggc
     1141 aatgtggggc gcaaatggag caagcaaaat ggctaatggt tctaaaattt cttttttgct
     1201 gcattttagc gtaaacaatt cattcacaca aatcataaaa gctgagaccg acgtattata
     1261 agagaaattc tcgatatcaa acgtgatttt ttttatcgtt ttgtgaagag ttttcaattc
     1321 ttctgccgtt ggggtttcag cactaacaag caggtttcca tctttataga acaaactcca
     1381 caatcgtttc aggaagcggt gaaccccatc aataccattt gtatcccaag gttttgattg
     1441 ctccaacggg cctaggaaca tttcataaag tctcaatgta tcagcaccat atcgttcaac
     1501 gatatcatcc ggattcacca cgttatacat agatttagac attttttcta ccgcccaacc
     1561 gcaatgatat tttccatctt cgagaataaa ttcggccgtt ttgtattccg gattccagtt
     1621 tttgaatttt tcagtatcca gaatatcatt agaaacaatg tttacgtcaa cgtgaagttg
     1681 agtcgtttca tattgatctt tcagattcag cgaaacgaat gtatttgtat cttttattct
     1741 atacacaaaa ttacttcgac cctgaatcat tccctgatta atcagctttt taaatggttc
     1801 atcttcacaa accaacccta aatcaaacaa aaatttattc cagaaacgac tataaatcaa
     1861 gtgccccgta gcatgttcag tcccaccaat gtataaatct acattgcgcc agtattggtt
     1921 tgcttcaggg ctaaccaacg ctttatcgtt tttcggatcc atgtaacgca aataataggc
     1981 tgacgaaccg gcaaaaccag gcatagtaca aagctccaat ggaaaatggt cttctgtttc
     2041 ccagttttta gcacgtccca gtggtggttc gcctttttcg gttggaagaa atttatcaat
     2101 ttcaggtaat tccaacggaa gcttgctttc gtcaagcata taaggcattc cttctttata
     2161 ataaaccggg aacggctcac cccaataacg ctggcgacta aaaatagcat cgcgcaatcg
     2221 gaaatttact ttcacacggc ctaatgctt
//
LOCUS       DATDNM010000323         3040 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1535866, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000323 DATDNM010000000
VERSION     DATDNM010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3040
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1535866"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..1316
                     /locus_tag="VI413_05390"
     CDS             48..1316
                     /locus_tag="VI413_05390"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEY6914091.1"
                     /translation="MKVDVLLGLQWGDEGKGKVVDVLTPNYDLITRFQGGPNAGHTLE
                     FEGKKFVLRSIPSGIFQGDKINVIGNGVVLDPALFKAEVDALEESGHPLTDRLKISKK
                     AHLILPTHRLLDAAYESAKGSGKIGTTGKGIGPTYTDKISRNGVRVGDILHNFEEIYN
                     AAVSRHKEILSQFNFEYDLPALEKAWFEGIECIKRFQLIDSEHFVNDALKTEKKVLAE
                     GAQGTMLDIDFGSYPFVTSSNTICAGACTGLGVAPGNIGEVFGIFKAYCTRVGSGPFP
                     TELFDETGDQMRKIGFEFGSVTGRPRRCGWVDLVALKYAIMINGVTQLIMMKSDVMDT
                     FETIKACVAYKIDGQEVEQFPFDLNDGAEPVYVELPGWKIDMTKMQSEDEFPEEFNAY
                     LNFLEEELEVPIKIVSVGPDRDQTIIRYEE"
     gene            1488..2171
                     /locus_tag="VI413_05395"
     CDS             1488..2171
                     /locus_tag="VI413_05395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metallopeptidase"
                     /protein_id="HEY6914092.1"
                     /translation="MYIVYIIFGVFALISWLISNNLKSKFERYSRIPIPRGMTGKEVA
                     QKMLRDNGIFDVQVISTNGHLTDHYNPTTKTVNLSENVYSSCSVAAAAIAAHECGHAV
                     QHAYAYAPLTLRSKLVPVVSFASNWVQWVLLAGILMIKIFSELMLFGIALFAATTLFS
                     FITLPVEINASSRALAWLNTAGITNYETHDQAKDALKTAAYTYVVAALGSLATLVYYI
                     LLFMGGSRR"
     gene            2308..2381
                     /locus_tag="VI413_05400"
     tRNA            2308..2381
                     /locus_tag="VI413_05400"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2342..2344,aa:Arg,seq:ccg)
     gene            2556..>3040
                     /locus_tag="VI413_05405"
     CDS             2556..>3040
                     /locus_tag="VI413_05405"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6914093.1"
                     /translation="MIDEKSKILFCEENENLGVLISEYLNSKNFNVDFFQDRDEAYKS
                     FVEHKHTMCILDITLFINGGFELIDKIHAENPLTYIIFLIPKRVRIDRAFHEKETFLP
                     KPFSINDLVSVIKFKSRSNPGKIKDTRRIYEPVNTTVYSIGKYSYEVQRRRLILNDDI
                     I"
BASE COUNT          980 a          568 c          615 g          877 t
ORIGIN      
        1 atggtattga aattccatgt gacaatataa aaatttaaaa ttcacacatg aaagtagatg
       61 ttttattagg tctccaatgg ggggatgaag gtaaaggaaa agtagttgac gtacttaccc
      121 ctaattacga tcttattact cgttttcaag gcggacctaa tgctggtcac accttagaat
      181 ttgaaggtaa aaaatttgtt ttgcgctcca ttccttccgg tatttttcag ggcgataaaa
      241 taaatgtaat tggtaacggt gttgtacttg acccggcttt atttaaagcc gaagtggatg
      301 cattggaaga atcaggacac ccactcaccg accgcctcaa gatttctaaa aaagcgcatt
      361 taatactccc cacccaccgt ttacttgatg ccgcttacga atcggcaaaa ggaagtggca
      421 aaattggtac aacaggtaaa ggaatcggac caacatacac tgacaaaatc agccggaacg
      481 gtgttcgtgt tggagacata ctacataatt ttgaagaaat atacaacgcg gcagttagcc
      541 gtcataaaga gatattgagt caattcaatt tcgaatacga cttgccggct ttggaaaaag
      601 catggttcga aggaattgaa tgcatcaaac gtttccaatt aattgatagt gagcatttcg
      661 taaacgacgc attgaaaact gagaaaaaag ttttggccga aggtgcacag gggactatgc
      721 ttgatatcga ttttggatcg tatccatttg taacctcatc aaacaccatt tgcgccggcg
      781 cttgtaccgg attaggagtt gcacccggaa atatcggcga ggtattcggt atcttcaaag
      841 cctattgcac ccgggttggt agcggtccgt tcccaactga attgttcgac gaaaccggcg
      901 atcaaatgcg taaaatcggc tttgaatttg ggtcggttac cggacgtccg cgccgttgcg
      961 gctgggttga tctggtggct ctgaaatatg caattatgat taatggggtt actcagctca
     1021 ttatgatgaa aagcgatgtt atggacactt tcgaaaccat taaagcttgc gttgcttaca
     1081 aaatcgatgg acaagaagtg gagcagttcc cattcgacct caacgatggt gccgagcctg
     1141 tttacgtaga gcttccgggt tggaaaattg acatgacaaa aatgcaaagc gaagatgagt
     1201 tccctgaaga attcaacgct tatctaaact tccttgaaga agaactggaa gtaccaatca
     1261 aaattgtttc agttggtccg gatcgcgatc aaacaattat ccggtacgag gaatagtctt
     1321 taactgactg ctttagaata taaaatacca tattttagaa tcaccttttg gtttcatacc
     1381 gaaaggtgat tttattttcc aaacaacgaa caactatcat ctgacaaaaa gtcttctggc
     1441 aaggattttg tggcaaaaca gactcaaact aataaaaaaa tagaattatg tatatcgttt
     1501 atattatttt tggtgttttt gccttaatca gttggctaat ctcgaacaat ctgaaatcaa
     1561 aatttgaacg gtactcaaga attcctatcc cacggggaat gaccgggaaa gaggtcgctc
     1621 aaaaaatgct ccgcgacaac ggcatttttg atgtgcaggt tatttcaacc aacggacacc
     1681 tcaccgacca ttacaatcct acaacaaaaa cagtgaatct gagtgagaat gtgtattctt
     1741 catgtagcgt ggctgcagca gcaattgcag cacatgaatg cggacatgcg gtgcaacacg
     1801 cctatgccta tgctcctttg actttacgtt cgaaactcgt gccagtagtt agctttgcgt
     1861 ccaactgggt acaatgggta ttgcttgccg gaattcttat gataaaaata ttttcggaac
     1921 taatgttatt cggaatcgct ttatttgcag caacaacact tttcagcttt atcactttgc
     1981 ctgtagaaat caatgccagc tcacgagcat tagcatggct taacacggcc ggcattacca
     2041 actacgaaac tcacgatcag gcaaaagatg cactgaaaac agctgcatac acctatgttg
     2101 ttgctgcgtt aggttcacta gctacgctgg tttattacat tttgcttttc atgggaggca
     2161 gtcgaagata gaaaaaagga agacaagaag ataatttgag aatgggaaaa taaaaaatta
     2221 ttttcccatt tttgtttttc atcttatttg atttcaaatt cgattttcag aattagaata
     2281 atttattacc tttgcagcca caaaaaaggc tccgtagttc agctgtatag aacgtcagat
     2341 tccggttctg gaggtcatgg gttagaatcc catcggggtc acttagttaa cgcaattgtc
     2401 attaagttgg cagttgcgtt tttcttaata acaaaaaaga ccgaaactct taaaacaatt
     2461 tgattttatt aaaattttat atacatttgg ccccgattta ggttcgcttt atttccaaaa
     2521 tgtaaaatct attattgcaa ctaaaaaaca cgagtatgat tgacgaaaaa tcaaaaattt
     2581 tattctgcga agaaaacgag aatcttggcg tattgatcag tgagtatttg aatagtaaga
     2641 attttaatgt agacttcttt caggatagag atgaggctta caagtctttt gtcgagcaca
     2701 aacacactat gtgtatatta gatataactt tatttataaa tggtggattt gaattaatag
     2761 ataaaattca cgcagaaaat ccactaacat atattatttt tctgattccc aagagagtaa
     2821 gaattgaccg ggctttccat gaaaaagaaa cattcctccc aaagccattc agcatcaacg
     2881 atctggtgag cgttataaaa ttcaaaagca gaagcaaccc cggcaaaatc aaagacacaa
     2941 gaagaatata tgaacctgta aatacgactg tttattccat tggtaaatat tcgtatgaag
     3001 tacagagaag aagacttatt ttaaacgatg atattataca
//
LOCUS       DATDNM010000324         2403 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2071059, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000324 DATDNM010000000
VERSION     DATDNM010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2071059"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1436)
                     /locus_tag="VI413_05410"
     CDS             complement(<1..1436)
                     /locus_tag="VI413_05410"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEY6914094.1"
                     /translation="MKSKFSITILFILLLLPTLVRSQKTGSDLIIQGTVTSPVEGAVI
                     GVNVTEIDANNRVVSGCITDLNGHYVLKIKNPENKISYSYIGYVKQVRKIGAQRTINI
                     ILQDNTQTIKDVVVTASKKHSEGGFSIPQREIASAMQTLDMKDVEGLQVSSVDEALQG
                     RIAGLDIVSNSGDAGSGTSMRIRGASSINGSNQPLIVLNGVPYEMQVDQSFDYANSNQ
                     EQFANLLSINPDDIQEITVLKDAAASAVWGSKGANGVIMITTKKGRSGPTRVEYSYRY
                     TGTVQPQGRKILTGDDYTMLMKQEFFNPAQNSQASNVVEYNYDKSFPNYENYNNNTDW
                     VKEVTQIGNISDHYLTLSGGGERATYRVSGGFLSQNGTIIGQSNSRLSSRAYLDYAVS
                     DRLKFIAELSYTYSNYNRSYNFDFGDGNSPNEDLSILGIAYKKMPNSSVYKQDEFGNN
                     TSEYFKTPSSSVLNWDQRFLVNPVALAM"
     gene            complement(1528..>2403)
                     /locus_tag="VI413_05415"
     CDS             complement(1528..>2403)
                     /locus_tag="VI413_05415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914095.1"
                     /translation="GVETGKEYYLTKGNVALHVTGSGNDMQIEGGGNMAMKDPVKVNR
                     VYNQSNGHTYFIDKPIQSPLNSVFKVMRQTPEFSAFFGLMSGFPAGGSSIIFVNKTNY
                     FGIDFNIKFFNTFNYTVYVPTNDAINQAITDGIIKPWDSKGVIVGINDITDKAEQTKE
                     ILNLERFIRYHFQDNSVFIDGQSVSSTYQSATMKIDDAASHFGTFKNKYYKIGVDGTG
                     NNLTLTSENNKSAHVVTTPGLYNIMTRDFVFSGKPSTFKNVDGTGTGLEFSTSTIYTS
                     STAVIHQIDAVLTFK"
BASE COUNT          670 a          508 c          435 g          790 t
ORIGIN      
        1 ctcattgcca acgctaccgg gttcaccaaa aacctttgat cccagtttag caccgaagag
       61 cttggtgttt taaaatattc cgaagtattg tttccaaact catcctgttt ataaacactt
      121 gaatttggca tcttcttata agcaataccc aaaattgata aatcttcatt cgggctatta
      181 ccatccccaa aatcgaaatt gtaactgcgg ttataatttg aataagtata tgaaagttca
      241 gcaatgaatt tcaaacgatc agaaacagca taatcgagat aagctcttga agacaaacgg
      301 ctgttgcttt ggccgataat ggttccgttc tgagataaga aacctccgga aacgcggtat
      361 gtagcccgct cgcccccacc cgacaatgtc agataatgat cactgatatt gccaatttga
      421 gtaacttctt ttacccaatc ggtattgttg ttgtaatttt cgtaatttgg gaatgattta
      481 tcatagttat attccaccac attcgacgct tggctgttct gtgccggatt gaaaaactct
      541 tgtttcatga gcatcgtata gtcatcacca gtcagaattt ttcgtccctg cggttgaact
      601 gttccggtat aacggtatga gtattccacc ctggttggac ctgaacgacc tttcttagtg
      661 gtaatcataa ttactccatt tgctcctttt gatccccaca cagcagacgc agcagcatct
      721 ttcaaaacgg tgatttcctg tatatcatcg ggattaatac tcaacaagtt ggcaaattgc
      781 tcctgattgg aattggcata gtcaaaactc tgatcaacct gcatttcgta aggaacgcca
      841 ttcaacacaa tgagtggttg gttgctacca ttaatagaac ttgctccacg aatacgcatg
      901 gaagttccac tcccggcatc gccagagttg gatacgatat ccaaaccggc aatacgtccc
      961 tgaagcgctt catcgactga agaaacctga agaccttcaa catccttcat gtcaagcgtt
     1021 tgcattgcac ttgcaatttc gcgctgtggg atactgaatc caccctcgct gtgtttctta
     1081 gatgctgtta caacaacgtc ttttatcgtt tgggtattat cttgcagaat gatattaata
     1141 gttcgctggg cacctatttt ccggacttgt ttcacatagc caatgtagct atatgaaatt
     1201 ttgttttccg ggtttttaat tttgagcaca taatggccgt ttaagtcggt gatacagcca
     1261 cttacaaccc tgttattagc atctatttca gttacattta caccgataac agcaccttcg
     1321 acaggcgaag ttacagtacc ctgtataatt aaatcacttc ccgtcttttg gcttcttacc
     1381 aaggtcggca gcaaaagtaa aatgaaaaga attgttattg aaaattttga tttcatccgt
     1441 aaataatttt aagtttaatg tccgttttca ctctcactta gtgagacagg tttgctcaga
     1501 aacctgttcg attctttttc atttgtttta tttaaaagtc aacacggcat caatttgatg
     1561 aatgacagca gttgatgatg tataaatagt tgatgttgag aattccagtc cggtaccggt
     1621 accgtccacg tttttaaacg tcgatggttt accactgaac acaaaatccc tggtcatgat
     1681 attataaagt cccggtgtgg ttacaacatg tgccgattta ttattctcgg atgtcaatgt
     1741 caggttgttt cctgtaccat ctacccctat tttgtaatac ttgtttttaa atgttccaaa
     1801 gtgagaagct gcatcatcta ttttcatggt agccgactgg taagtagagc tcacagactg
     1861 tccatcgatg aaaacagaat tatcctggaa gtgatatctg ataaagcgtt caaggttaag
     1921 aatttcttta gtctgttctg ctttatctgt tatatcgttt ataccaacta taactccttt
     1981 tgaatcccat ggttttataa ttccgtctgt aatagcctga ttaattgcat catttgttgg
     2041 cacatacacg gtataattaa atgtattgaa aaatttaatg ttgaaatcaa taccaaaata
     2101 gtttgtttta ttaacaaata ttattgaact gccgcctgca gggaagccac tcatcaatcc
     2161 aaagaatgca ctgaactcag gtgtctgtct cattacttta aatacagaat tcaaaggcga
     2221 ttgaattggc ttatcaataa aataggtatg tccattcgat tggttataaa ccctgtttac
     2281 ttttaccgga tctttcatgg ccatattgcc gccgccttca atttgcatgt cgttgccact
     2341 gcctgttaca tgcaatgcta catttccttt agtgaggtag tattctttac ccgtttctac
     2401 gcc
//
LOCUS       DATDNM010000325         6431 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1750026, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000325 DATDNM010000000
VERSION     DATDNM010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6431
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1750026"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..2059)
                     /locus_tag="VI413_05420"
     CDS             complement(134..2059)
                     /locus_tag="VI413_05420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005925583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914096.1"
                     /translation="MKINKIIIGLCALLSFASCSDFLDVKDESAINPSIWDNEESAKL
                     YLNNIYNACMVPFGGEDLVSSLANLSDETSDMGSSILLGTLGASDVGTYKVNTYEPIR
                     YINIAFEAMKTSKLTPAEKNRILGQLYFLRAWQHWKLINLYGGVPYMRDYVTFTSPDS
                     LTNAKRNKTSDCIKFLKEDLDSAIAKLPTAWDINKEYSRITRAAAASFKGRVLLFYAS
                     PQFNPEHNMDRWKDAYDANVLANSLCIQDGYELMSVVAPVTKEWPYGYDFNQIFTKKK
                     SEGNKEVLIVTPYASDIKTHGYENSVCPAEFTTGTGAPSLCPVWDLVIAFPMKDGSLA
                     FKYNPTVKNTRTFIGNGSDATKFYLNRDPRFYSTVAFNGGYYQLEGNGSRRQWTYNCP
                     KKTTSGIITYYSENVAFERTTPTGFFCRKMVNPSILRANMVKSTTDWIEMRYAEVLLN
                     LAECAFEYEGTNSTLGYDCLKQIRSRAGIEAGADGFYGLKSSTEISPIELVMNERRVE
                     LAFEGKRFYDLRRRNMFTADLGSYIYKLNGWKKSGSGFIFTLKNPSDTAIFLYPAKRD
                     TISQGNLYKYFTMTGKSTGPLVKAIAYVCVPDSATLKTTNTGNYNFFGIPQDILTRSP
                     AIKQNFGWQNGSFNPFE"
     gene            complement(2072..5386)
                     /locus_tag="VI413_05425"
     CDS             complement(2072..5386)
                     /locus_tag="VI413_05425"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6914097.1"
                     /translation="MNHQKIQKRKSLQFHFRESISTLMIMFVCFLFSPANIFAQGNQD
                     DASGQQQITVKGKVFDETNSPVIGASILVAGTKVGTITDINGNFTIKAPANGTLTISY
                     IGYVPQKLKVSANLSNIVLKEDAAKLDEVVVVGYGQVKRANLTGAVGNLSMKQVEDFP
                     APNLASVISGTMPGVHVSEPTGNPLGEASISVRINGSFSSTGEPLYVIDGFIRDVTAF
                     NMIDPSEIESISVLKDASASVYGVRGSNGVVLVSTKKGKSGKPKVSYSASYGTNQGVQ
                     MPEMMSAYEQGVALNDLWAQEITYKHSTTNYTFFSDQELAKLKTLDYNWLEKGWHDSN
                     NTRHTLNVTGGSETVRYFIGGSYMFANGNFSNLSLNRYGIKFGVEAEITKNLKGNFSM
                     DYSQKDANQPLNSLDSEADRMYGTFSELARTPRYLPSYINDLPVNTVGGINALEMLNS
                     GSYRKNNTSSLSTGMSLDYSFSGVKGLKLSISGNYSRNSGYGKQLSKPYYIYSFTPDT
                     QYPHLFSTEQLPITDSNYKRIIYNGDKIYESADFSYSYQLNPQISYARKFGKHDLNAM
                     VVYEQSESGGNGLSESRQTVVIPNYEVMAGYTQSTQTTASNISTLTRRQSFIGRLNYS
                     FADKYFLESAFRYEASTNFAPEYRWGLFPSVSLGWRVSEEAFFKDNVTFMTNLKLRAS
                     AGRLGDDRVSANQWRSSYGLNGSTLIGGGTLSTNLKPQNGGLVYYNASWEKSDNYNAG
                     IDMQFFNELSVSVDGFYKHTFDIINTPQSTFPQSAGITGTIPKLNYGIQNAWGGEADI
                     TYNKKINKDFSFQIKGNFAYAMNKVIKKYQNPGVVGTWADENGKVSGGEVGFTSMGIA
                     RNQADIDNYIAYLKSNYETYHGGLDESKIMLMNKFGTADMKPGMLMYKDVGSASYQDA
                     DGNWHDGAPDGIIDENDQRIISKYSFNPYNYGFSLGVTWKNISVNAMFTGAFGSNVVF
                     EKGFWTSASGGGRSGEFLSQYSNQLKEWSGNYWTESNVNAKYPRLDDYSLRGYRSTFW
                     MRDGHELHLKTINVSYTLPTSILKHVGIDQCRVFCQGSNILTIINPYPYKDASVGFWS
                     DYPMIRTINFGLNLMF"
     gene            5911..>6431
                     /gene="pyrE"
                     /locus_tag="VI413_05430"
     CDS             5911..>6431
                     /gene="pyrE"
                     /locus_tag="VI413_05430"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016277344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEY6914098.1"
                     /translation="MKTLEKAVAEKLLKIKAIKLQPNNPFIWASGWKSPIYCDNRKTL
                     SYPQIRSFIKIELSRLILEMYPDVEVIAGVATGAIAQGALVADELGLPFVYVRPTPKD
                     HGLENMIEGDLKPKQKVVVIEDLISTGGSSLKAVDAIRNDGSEVLGMLAIFTYGFPVA
                     EEKFKKAKVKLTT"
BASE COUNT         2032 a         1306 c         1040 g         2053 t
ORIGIN      
        1 aaaaggctgg gcattcgccc ccaggcaaat actcagcaaa aaaagaagaa aaatttgttt
       61 cataaagctg ttatattata ctaaaattct catgcaactg agttcagtta catgagaatt
      121 caatagttat aaattattca aacggattga acgacccatt ttgccaacca aagttctgtt
      181 taatagccgg actacgagtc aaaatatcct gaggaattcc aaagaaatta taatttcccg
      241 tgttagttgt tttcaatgtt gcggaatcag gcacacacac ataagcaatt gccttcacta
      301 aaggaccggt cgactttcct gtcattgtaa aatacttgta caggtttcct tgtgatattg
      361 tgtctctttt ggcagggtat aagaaaattg cagtatcgga aggattcttt agcgtaaata
      421 tgaagccaga cccactcttc ttccaaccat tcagtttata aatatacgaa cctaaatctg
      481 ctgtaaacat attacggcga cgcaagtcgt aaaaacgttt tccttcaaag gccaactcaa
      541 cacgacgctc gttcatcact agctcaatag gagatatttc ggtgctggat tttaagccat
      601 aaaatccgtc tgctccagcc tcaattccgg cgcgacttct gatttgtttt aaacaatcat
      661 agcccaatgt tgaatttgta ccttcgtact caaaagcaca ttcagccaga ttaagtaaca
      721 cttctgcgta acgcatttct atccagtcgg tagttgattt gaccatatta gcacgtagaa
      781 ttgatgggtt taccatcttt ctacaaaaga aacctgttgg tgtggttctt tcaaacgcaa
      841 cattttcaga ataataggta ataatacctg aagttgtttt cttaggacaa ttgtacgtcc
      901 actgacgtct gcttccatta ccttccaact gataatatcc accattaaac gcgacagttg
      961 agtaaaaacg aggatcgcgg ttcagataga attttgtagc atcgctacca tttccaataa
     1021 atgttctggt atttttgaca gttggattat atttaaaggc aaggctacca tctttcattg
     1081 ggaaagcaat tactaaatcc caaacagggc acaatgaagg agctccggta cccgtagtaa
     1141 attcagcagg acatacagag ttttcatacc catgcgtttt tatatctgaa gcataaggcg
     1201 ttacaatcaa cacttcttta tttccttcag atttcttctt ggtaaaaatc tgattaaaat
     1261 catatccata aggccactcc tttgttacag gagcaacaac agacatcaac tcataaccat
     1321 cctgtataca taaactattt gcaagcacat tggcgtcata cgcatctttc catctatcca
     1381 tattatgttc tggattaaac tgcggactag cgtaaaacaa taaaactctt cctttaaagg
     1441 atgctgctgc tgctctggta atacgtgagt attctttatt tatatcccat gctgtgggta
     1501 atttagctat agcagagtct aaatcttctt tcaaaaattt gatacaatca gatgttttat
     1561 ttcttttggc attggttaaa ctgtcaggac ttgtaaaagt tacataatct ctcatataag
     1621 gcacgccacc atataaattt atcaatttcc aatgttgcca tgctcttaaa aaatacaact
     1681 ggccaagtat ccggtttttt tcagccggag ttaatttgga tgttttcatt gcttcaaagg
     1741 caatattaat atagcgaatt ggttcatatg tatttacctt atatgtcccc acatcactgg
     1801 cacctaaagt ccccaataaa attgaagagc ccatatctga agtttcatcc gacaaattag
     1861 ctaaagaaga aaccaaatct tctcctccga acggaaccat gcatgcatta tagatattat
     1921 tcagatataa ttttgcagat tcttcattat cccatatcga tggattaatt gcagactcat
     1981 cttttacatc taagaaatca ctacacgaag cgaatgatag tagtgcacat agacctatta
     2041 ttattttatt tattttcata cctgtaaaat attagaacat aagatttaaa ccaaagttaa
     2101 tagtacgtat cataggatag tcggaccaga atccaacgct tgcatcttta tatggatacg
     2161 gattgataat tgtcaaaata tttgatccct gacagaaaac ccggcattga tctataccta
     2221 catgtttcaa tatgcttgta ggcaatgtat aagacacatt aattgttttc agatgaagtt
     2281 catgaccatc acgcatccaa aatgtagaac ggtaaccacg taaactataa tcatccaaac
     2341 gcggatattt agcattcacg ttactttcag tccaatagtt tccagaccat tccttcaatt
     2401 ggtttgagta ttgagataaa aactcacccg atcgtcctcc acctgaagct gaagtccaaa
     2461 atcctttttc gaaaactaca ttactaccaa aggcacctgt aaacattgca ttaactgaaa
     2521 tatttttcca ggtcacacct aaactgaagc catagttata tggattaaaa ctatacttgc
     2581 ttattattcg ttggtcattt tcgtcaatga taccatcagg agcaccatcg tgccagttac
     2641 catctgcatc ctgatacgaa gcactaccaa catctttata catcaacatc cctggtttca
     2701 tatctgccgt cccaaactta ttcataagca taatcttcga ttcatctaaa ccaccatgat
     2761 atgtttcgta attgcttttt aaataagcaa tatagttatc aatatcggcc tgattccgtg
     2821 caattcccat actggtaaat ccaacttcgc ctccactcac cttaccattt tcatctgccc
     2881 atgtacctac tacacccgga ttttgatatt tcttaatcac tttgttcatt gcatacgcaa
     2941 agttcccttt tatctgaaaa ctaaaatctt tatttatttt cttattataa gtgatatctg
     3001 cttcaccacc ccatgcattt tgaattccat agtttaattt aggaattgta cctgtaatac
     3061 ctgctgattg agggaatgta ctttggggag tatttataat atcgaatgtg tgcttgtaaa
     3121 aaccatcaac acttaccgac aattcattaa agaattgcat atctataccg gcgttatagt
     3181 tgtctgactt ttcccacgat gcattgtaat acaccaatcc tccgttttgt ggtttcaaat
     3241 tggttgataa agttccgccc cctattaagg tggacccatt aagtccgtag cttgaacgcc
     3301 attggtttgc cgacactctg tcatcaccca atctacctgc cgaagcacga agcttcaaat
     3361 tggtcatgaa tgtaacatta tctttgaaaa atgcttcttc agaaaccctc caacccaaag
     3421 aaaccgaagg gaaaagtccc caacgatatt ccggagcaaa atttgttgaa gcttcgtaac
     3481 ggaaagcact ttctaaaaag tatttatccg cgaagctata atttaaacgt ccgataaatg
     3541 attgacgacg ggtcaatgta gatatgttgg atgctgtagt ttgcgtagac tgcgtataac
     3601 ctgccatgac ttcgtaattt ggaattacca ccgtttgacg actttctgaa agcccattac
     3661 cgccactttc agattgttcg tatacaacca ttgcattcaa atcgtgcttt ccaaatttcc
     3721 ttgcatacga aatctgagga ttcaactgat aggaatacga gaaatctgca gattcatata
     3781 tcttatcacc gttataaata atccttttat aatttgagtc ggtgatagga agttgttccg
     3841 ttgaaaacaa atgaggatat tgggtatcag gtgtaaacga ataaatataa tatggtttgg
     3901 acaattgttt gccatagcct gaattcctgc tataatttcc ggatattgaa agttttaatc
     3961 ctttaacacc agagaaggaa taatccagcg acattcctgt cgacaaacta cttgtgttat
     4021 ttttacgata agatcctgaa tttagcatct ccaatgcatt gatacctcca acagtattaa
     4081 caggcaaatc attgatgtaa gaaggtaaat accgcggagt tctggcaagt tcactaaatg
     4141 taccatacat tctatctgct tcagagtcta aagaattaag aggttgattt gcgtcttttt
     4201 gagaataatc cattgaaaaa ttacccttca agtttttagt tatttctgct tcaactccaa
     4261 atttaattcc atatctgttt aaactcaaat ttgagaaatt tccattggca aacatgtaag
     4321 aacctccgat gaaatatcgt actgtttccg aaccaccagt tacatttaac gtatgtcgtg
     4381 tattgtttga atcatgccaa cccttttcca gccaattata atcaagcgtt ttcaattttg
     4441 ccagttcctg atctgagaaa aaagtataat ttgttgtaga atgcttatag gtaatttcct
     4501 gagcccacaa atcgttcaaa gccacaccct gctcgtaagc actcatcatt tcgggcattt
     4561 gtacaccctg atttgtacca taagaggcag aataacttac cttaggcttt cctgatttcc
     4621 cttttttagt tgaaaccaac accacaccat tcgaaccacg aacaccataa acagatgcag
     4681 atgcatcttt caacaccgaa atgctttcaa tttcggatgg gtcaatcata ttaaatgctg
     4741 ttacatcacg aataaatcca tcaataacat ataatggttc accggtagag ctaaaagaac
     4801 cattaatacg aacacttatt gaggcttcgc caagtggatt tccggttggt tcacttacgt
     4861 gcacacccgg catagtacca ctaattactg atgctaaatt tggagctgga aaatcttcga
     4921 cttgcttcat gcttaaattt cctacagcac cggtaagatt tgctcgtttt acctgaccat
     4981 aaccaactac aacgacttcg tccaatttag cagcatcttc ttttagtaca atattcgata
     5041 agtttgctga aactttaagc ttttgaggaa cataaccaat atacgaaatt gtcaatgttc
     5101 cgtttgcagg agctttaatg gtaaagttcc cgtttatatc tgtaatcgtt cccactttgg
     5161 ttccagctac aagtattgat gctccaataa ctggcgagtt agtttcgtca aatacttttc
     5221 ctttcactgt aatttgttgt tgtccgcttg catcatcctg gtttccctga gcaaatatat
     5281 ttgccggaga aaaaagaaaa caaacgaaca taatcatcag tgtagaaatt gactcacgga
     5341 aatgaaattg taagcttttc cgcttttgaa ttttttggtg attcatggat tgttgtttat
     5401 ttaaggtatt attaaaaatt ctaatcatta aaaacgcttt tgagatattt tatttcggct
     5461 gtaaataagc atcttgaatt tcaaaccaca cagattttaa cttgtagtaa aaagtaagac
     5521 gaaagacttg aaactttgta atcatttttc ccatttataa tcgtaattct attcattcat
     5581 ataacacaaa tatcagaaaa tgggtttata taaacaacgg ataatgaatt ttcaactgta
     5641 attcttattg aactaagcag ctaagccaaa catatgagtt atactcaccg gcgaatatat
     5701 atttctgaat atttctatca aacaattcta tatttattca tcttttgagc tcgcattgta
     5761 tttatatgcc attctacttg tcaaaaaaat gttttaaaat atctcttttt atgttttatg
     5821 tctcaacatg tttacgtact tttgcaaaat aaaaaaagat atgtgttgaa gacatattat
     5881 gtcaaaaagt cattacaaaa aacattagaa atgaaaacat tagaaaaagc tgtagctgaa
     5941 aaactactca aaatcaaagc cataaaattg cagccaaaca acccgttcat ttgggcctct
     6001 ggttggaaat ctcccatata ttgtgataat cgcaagactc tttcataccc gcaaatccgc
     6061 agctttatca aaattgaact ttcacgttta attctggaaa tgtatcctga cgttgaagta
     6121 attgccggtg tagctacagg tgcaatcgcc cagggagctt tggtggctga cgaacttgga
     6181 cttccatttg tatatgtacg tcctactccg aaagatcacg gattggaaaa catgattgaa
     6241 ggtgatttga aaccaaagca aaaagtagtg gttatcgaag accttatatc aactggtggt
     6301 agcagtctga aagcagtgga tgcaatccgc aacgatggtt ctgaagttct tggtatgttg
     6361 gccattttta cttacggatt ccctgttgca gaagagaaat tcaaaaaagc aaaagtaaaa
     6421 cttaccacat t
//
LOCUS       DATDNM010000326         3596 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_896284, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000326 DATDNM010000000
VERSION     DATDNM010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3596
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896284"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..679)
                     /locus_tag="VI413_05435"
     CDS             complement(<1..679)
                     /locus_tag="VI413_05435"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005677295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEY6914099.1"
                     /translation="MEFTAQQIADFLGGEIQGNPAVKVSDFSKIEEGKPGTLSFLSNP
                     KYSQYIYDSQASIVLVNKDFQPEREVQATLIRVNDAYQALATLLSLVDQAKPKKTGVS
                     PLAYISATAEIGENVYIAPFVYIGEKVIIGKNSMIYAHVNIEDGTKVGENSVLNSGVK
                     VYYNCVIGANCILHSGCVIGSDGFGFAPTGDGSYKKIPQMGNVVLEDDVEIGANTVVD
                     RATLGSTV"
     gene            complement(782..2011)
                     /locus_tag="VI413_05440"
     CDS             complement(782..2011)
                     /locus_tag="VI413_05440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY6914100.1"
                     /translation="MKKPNKRKIINDPVFGFINIPNDFLFDIIQHPYFQRLNRIKQLG
                     LSSFVYPGAQHTRLQHSLGAMHLMGEAIAQLRQEGNDITHDEAEAVRACILLHDIGHG
                     PFSHTLEHSLVTGINHEEISLWMMQKINRELDGKLEMALEIFTNVYPKKFLHQLVSSQ
                     LDMDRLDYLSRDSFYSGVSEGIIGSARIIKMLNVHNDQLVIEAKGIYSIEKFLVARRL
                     MYWQVYLHKTSVAAEKMLMNILKRAKELASRNVELFASPALHYFLYNQIDKPHFENSE
                     EALDHFAMLDDSDVICAIKVWASHADLVLSTLCKSFTDRKLFKVEIGTEPINNEKRNN
                     QLAQYMDHFNVTIHEASYFMGEEIVSTDTYSPEDDHINILYKDGTVKDIADASDMLNI
                     TVLTKKVEKHYFCFYRI"
     gene            complement(2262..>3596)
                     /locus_tag="VI413_05445"
     CDS             complement(2262..>3596)
                     /locus_tag="VI413_05445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005789241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HEY6914101.1"
                     /translation="FAEKQSLETKIDAAGNVLICKPATKGYENRKKMILQSHMDMVCE
                     KNSDVDFDFATEPINTYIDEDWVKAKGTTLGADNGIGMSMMLTVLASNKLKHPALECL
                     FTVDEETGLTGAFALGQNFLSGEVLINLDSEDDGEIFVGCAGGIDTTAELTYRPIKIS
                     EKHFAFKVSVKGLKGGHSGDDIDKGLGNANKILTRFLWTLNKKTNLHLHSIDGGNLRN
                     AIAREAVAVASVPWSEKENVRVHFNLFLVDMETEKGNVEPNMNLELESEALPETAFDK
                     KTSDALLDVLYACPHGVKAMSMDMPGLVETSTNLASVKMKEENKIVITTSQRSSVESA
                     KHDIANQVEAVLTLAGATVTHGDGYPGWKPNLNSDILKTAQECYTKLFGTEPKIRAIH
                     AGLECGLFLEKYPYLDMISIGPQMYGVHSPDERLSISSTQNCWKWLVEILAN"
BASE COUNT          901 a          818 c          770 g         1107 t
ORIGIN      
        1 taacagtgct gccaagggta gctctgtcta caactgtgtt tgcaccaatt tcaacatcat
       61 cttccagcac cacattcccc atttgaggga tttttttgta cgaaccatca cctgtggggg
      121 caaagccgaa tccgtcggaa ccgattacgc aaccggaatg taatatgcag ttagcgccaa
      181 tgacacagtt gtaatatact tttacacccg agtttagtac tgaattttca cccactttgg
      241 tgccatcttc aatgtttaca tgggcataga tcatcgagtt ttttccaatg attacctttt
      301 cgccgatata aacgaacggg gcaatatata cgttttcacc aatttcggct gtagctgaaa
      361 tatatgctaa cggggaaact cctgtttttt tcggtttggc ctgatcgacc agcgaaagca
      421 aggtggctaa tgcctgatat gcatcattta cacggattaa cgtggcctga acttcacgct
      481 ccggctgaaa atctttgttg acaagcacaa tgctggcctg gctatcgtaa atgtactggc
      541 tgtatttcgg gttcgacaaa aaactcaacg tacccggctt tccctcttca attttagaga
      601 agtcactaac ctttactgcg ggattacctt gtatctcacc gcctaagaaa tctgcaattt
      661 gttgagctgt aaactccata taaaaaaatt tggttgcaaa agtactaaac tatttccaat
      721 taaccataaa accgatgaaa acaagactcg ttttcggtat tattaattta atgtatgcta
      781 attaaatccg gtaaaaacag aaatagtgtt tttcgacttt tttagttaat acggtaatat
      841 tcaacatgtc cgaggcatct gcaatatctt tcacggtacc atccttgtat aatatattga
      901 tgtggtcatc ttcggggctg tacgtgtcgg tactcacaat ttcttcgccc ataaaatagg
      961 aggcttcgtg aatagtaacg ttaaaatgat ccatatattg cgccagctgg ttatttcttt
     1021 tttcattgtt aatcggctcg gtgccaatct ctactttaaa caactttcta tcggtgaatg
     1081 atttgcataa agtagaaaga accaaatcgg catgcgatgc ccatactttt atggcgcaaa
     1141 taacatccga atcgtcgagc atggcaaaat gatccagggc ttcttccgaa ttttcaaaat
     1201 gaggcttgtc tatttgattg taaagaaaat aatgcaaagc gggtgatgca aaaagttcta
     1261 cgttgcggct tgccagttct ttggcgcgtt ttaaaatgtt catcaacatc ttttcggcag
     1321 caacagatgt tttatgcagg tacacctgcc agtacatcaa ccgccgtgca accagaaatt
     1381 tctcgataga ataaattcct ttggcttcta tcacaagctg gtcgttatgc acgttcaaca
     1441 ttttgataat acgtgccgat ccgattattc cttcgctcac tcccgaataa aaactgtcgc
     1501 ggctcaggta atcaagcctg tccatgtcca gttggctcga aacgagctgg tgcaaaaact
     1561 ttttgggata cacgttggtg aaaatttcca gtgccatttc cagtttgccg tccagttcgc
     1621 ggttgatttt ttgcatcatc cacagcgaaa tctcctcgtg gtttatcccc gttaccaggc
     1681 tgtgctccaa cgtgtgtgag aagggtccgt ggccgatatc gtgcagcagg atgcatgccc
     1741 tgactgcttc agcttcatcg tgggtaatat cattcccctc ctgacgcagc tgggcaatgg
     1801 cttcgcccat tagatgcatg gctccgagcg agtgttgcag gcgggtgtgt tgtgcgccgg
     1861 ggtaaacaaa tgacgaaagc cccaactgct ttatacggtt cagccgttga aaatagggat
     1921 gctgtataat gtcgaacagg aagtcgttcg gaatattgat aaatccgaac accgggtcgt
     1981 tgattatttt tcgtttattt ggttttttca tgttttgata ttttgaacaa ggaacaaaat
     2041 gtaaggagta tgcttacgta ttgttcgatt gagcaaaaaa tgttttattt ctattttaaa
     2101 acaaatagtt cggtgctctg tggcttaaaa caaagtgcag agcaccgtag catttgtagg
     2161 ttacattgag tacaaagtat tgaaggtgca gagcaccgaa ctattatttg ttgatatatg
     2221 gcactttgcc agtgttactg ttgattgtcc taaccaatca actaattagc caatatctcc
     2281 accagccatt tccagcagtt ttgtgtggat gagatactca gccgttcgtc aggtgaatgt
     2341 acgccataca tttgcggccc tatggaaatc atgtccaggt atggatattt ttcgaggaaa
     2401 agtccgcatt ccagtccggc atggatagcc cgtattttag gttcggtgcc gaagagtttt
     2461 gtatagcact cctgtgcagt tttcaggatg tccgaattca ggttcggttt ccaccccgga
     2521 tagccatcgc catgtgtaac ggttgctccg gcaagagtca acactgcttc cacctggttg
     2581 gcaatatcgt gttttgccga ttctaccgag ctgcgttggc tggtggtaat cactatcttg
     2641 ttttcttctt tcatttttac cgaagccaga ttggtcgaag tttccaccag gccgggcatg
     2701 tccatgctca tggcttttac gccgtgcgga caggcataaa gcacatccag gagtgcatcg
     2761 gatgtttttt tgtcgaaagc ggtttcgggt aatgcttccg attccagctc caggttcata
     2821 ttgggctcca cattgccttt ctcggtttcc atatccacca gaaacaggtt gaagtgaacg
     2881 cgcacatttt ctttttccga ccacgggacc gaagctacag ccactgcttc acgcgcaatg
     2941 gcattccgga gatttcctcc atcgatgctg tgcaggtgca ggtttgtttt tttgtttagt
     3001 gtccacaaaa agcgggtcag gattttattg gcattgccaa gccctttgtc tatgtcgtcg
     3061 ccggaatggc cacctttgag cccttttacc gaaaccttaa acgcaaaatg tttttcagag
     3121 atttttatcg gtctgtaagt aagttcggca gtggtatcaa ttccaccggc acaacccacg
     3181 aagatttcac catcgtcttc cgaatcaagg tttatcagca cttcaccgct caggaaattt
     3241 tgtcccaaag caaatgcacc tgtcagcccc gtttcttcat ctacggtgaa caggcattcc
     3301 agcgccggat gtttcagctt gtttgatgca agcacggtta acatcatcga catgcctatg
     3361 ccattatccg ctccaagcgt tgttcctttt gccttcaccc agtcttcgtc tatataggta
     3421 ttgatgggtt cggttgcgaa atcaaaatct acatcactgt ttttttcgca taccatatcc
     3481 atgtgcgact gcaggatcat tttcttgcgg ttttcgtatc ctttggttgc cggcttgcaa
     3541 ataagtacat tgccggcagc atcaatcttt gtttccaggc tctgcttttc agcaaa
//
LOCUS       DATDNM010000327         4444 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_576262, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000327 DATDNM010000000
VERSION     DATDNM010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4444)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4444
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576262"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            233..3349
                     /locus_tag="VI413_05450"
     CDS             233..3349
                     /locus_tag="VI413_05450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6914102.1"
                     /translation="MKKPFTKLLLLFSLILLAPMAFAQGVLVKGQVVDKEGTPLPGVS
                     VLKIGSGKGTVTSIDGKFALANLNEKDSLRFTYVGYNNQIIKVGDQTVINVVMLESAS
                     ALEEVQVVAFQTQKKNSVIGSINTINPTELKIAPTNLTNALAGKIAGIISYQRSGEPG
                     QDNAEFFIRGVTSFGYKNSPLILIDGVEVTANDLARSEPDNIASFSIMKDATATALYG
                     ARGANGVILVTTKSGKKGKANISARVENSISAPTMTNHFLGGVEYMELYNKAERTRNP
                     NAVLFYSKDKIEGTRNGLNPQIYPNVNWYNELFRSTVQNQKANLNVSGGGEIAQYYLS
                     VSYTDEKGLLKVDNMNNFNNNINIKRYNLRANIDINLSKTTKAAVKFYSLIDRYNGPI
                     NDASAIFSSVMNANPVNFPKYYEKDESTQYVNHVMFGNKGNGTFHNPYADMVKGYKDR
                     FTSTTMAQFQLEQDLSMITNGLKLRGLMSFNTYSSNENSRSYDPFYYGMNELETDWGI
                     VHNLDQIKEGTESLGDPIVKNDANSSFYFEGVAQYNRNFNDKHDVGGLLVLTAKESLN
                     TIGGSALATLPSRNLGVAGRATYAYDGRYFTELNFGYNGSEKFAESHRFGFFPSAGLG
                     WAVSNEPFFTSGLKKVISQLKLKATYGYVGNDAISDPKDRFFYMSSVNINDGGKGYSF
                     GSEFNNYYSGYSVSRYANADISWEIAEKTNYGLELGLFNNATIQIDYFTENRSNIYWP
                     RNDVPATMGLTAGISSNIGKARSHGIDGSVDYKVSVNKDLWIISRVNFTYATNELIEA
                     SEPPYMYPYLSKIGYPINQQWGLVAERLFVDELDVINSPWQYSKSDKPEDLNYSAGDI
                     KYVDINEDGKIDDDDKVAIGYPTVPEIVYGFGASSGYKDFDLSFFFQGSARSSFFINP
                     ASISPFVKERNALTIIANNHWSDENPDPNAFWPRLSVNAVANNEKYSTWWLRNGAFLR
                     LKSVEFGYSLPTKLLKKINVEKVRFYASGTNLFVFSKFDLWDPEMGGEGLGYPPQKII
                     NLGVNVNF"
     gene            3370..>4444
                     /locus_tag="VI413_05455"
     CDS             3370..>4444
                     /locus_tag="VI413_05455"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914103.1"
                     /translation="MKHIILYSLLFSMLLLGSCSDYLDVVPDKTQEISLLFERREAAY
                     NALATCYHFLPQEDGVYSTSAFASDELTTPIPKETPGVELMRGKQTASEPIMGLWNDT
                     YPYGRNQESLYKAIRCCNIFIENIDLVKDMKAEEKASWKSEAIFLKAYYHFLLFRQYG
                     PIPIVDINLPITADVNDIRVKRKPVDEVIDYIVSTIDKSVENLPLRITSSNDLGRIDQ
                     VIAYSIKSRVLLYAASPLFNGNAAFYDGFKNKDGVRLFNPTYDKEKWKKALDAAEFAI
                     NIATTNGVKMYEFRGVIPTFDTLDYKQPEVKALYNYRYMFTEKWNTELIWGNSDPVKN
                     GDWWSLQAASMMINPDASAQAAAW"
BASE COUNT         1435 a          739 c          916 g         1354 t
ORIGIN      
        1 ctcgcagggt agagatactt gatttgcagg gcagacttat cagtcatttt gtgtcacaat
       61 tgacttttga gagagttagt gtagttggca tgaagcccgg tatttatatt gtaaaaatca
      121 gcgataatct gaatgtattt acccgaaaat tacagattaa ttgattgaaa caggatatgc
      181 aattgacttg aagtcagaca gaagttaata ttaaatctat catagaaaga aaatgaaaaa
      241 accatttaca aaattacttt tactttttag cctcatatta ctggcaccaa tggcttttgc
      301 gcagggcgtg ttagtaaaag gacaggtggt tgataaggaa ggcaccccac taccgggagt
      361 ctccgtgttg aaaattggtt caggcaaagg caccgttaca tcgattgatg gaaaatttgc
      421 tcttgccaat ctgaatgaaa aagactcgct tcgttttact tatgttggct ataataatca
      481 aattattaaa gtcggcgacc aaacagtaat caatgttgtt atgctcgaat cagcgagcgc
      541 attagaagaa gtgcaggttg ttgcgtttca aacacagaaa aagaatagtg taatcggctc
      601 aatcaacact ataaacccaa ccgaattgaa aatagcacca accaacctga caaatgcttt
      661 ggcaggaaaa atagccggta ttatttcata tcagcgttcg ggtgaaccgg ggcaggataa
      721 tgccgagttt tttatacgtg gagtaacctc atttggttat aaaaatagtc cgttaatttt
      781 gattgatggt gttgaggtta ctgcaaatga tttagcgcgt tctgagcctg ataatattgc
      841 cagtttctct attatgaaag atgctacagc cacagcgcta tacggagcac gcggtgctaa
      901 cggagtaatt ttagttacta caaaaagtgg taaaaaaggt aaagccaata tttcagcgcg
      961 tgttgaaaat tcgatttcag caccaacaat gacaaatcac tttttgggtg gtgtagagta
     1021 tatggaattg tataacaaag ctgagcgtac ccgtaatccc aatgctgtac ttttttattc
     1081 caaggataaa attgagggaa cccgcaatgg tctcaatcct cagatttatc caaacgtgaa
     1141 ctggtacaat gagctgtttc gtagtacggt gcaaaatcaa aaagccaact taaatgtaag
     1201 cggtggtggg gagattgctc aatattacct ttcggtctcg tacaccgacg aaaagggatt
     1261 gttgaaagtt gataatatga ataattttaa taacaatatt aatataaaac gctataattt
     1321 acgtgccaat attgatataa atctttcgaa aacaactaaa gctgcggtta agttttattc
     1381 attgattgat agatacaatg gacctataaa cgatgcaagt gccatttttt cttcagtaat
     1441 gaatgccaat cccgtaaatt ttccaaagta ttacgaaaag gatgaaagta cacaatatgt
     1501 aaatcacgtg atgtttggaa acaaaggaaa cggaactttc cacaatccgt atgccgatat
     1561 ggttaaagga tataaagatc gttttacctc caccactatg gctcagtttc agttagagca
     1621 ggatttaagt atgataacca atgggttgaa attacgtgga ctgatgtcgt ttaatacata
     1681 tagctcaaac gaaaactcac ggagttatga tccattttat tatggaatga acgaacttga
     1741 aactgattgg ggaattgtcc ataacttaga ccaaatcaaa gaaggaactg aatcattggg
     1801 cgatccaatc gtgaaaaatg atgcaaatag tagtttttac tttgaaggtg ttgcgcaata
     1861 taatcgtaat tttaatgata aacatgatgt tggaggattg ttggtactca cagcaaaaga
     1921 atcgcttaat actatcggtg gtagcgcact tgctactttg ccttcgcgaa atttaggagt
     1981 tgcgggcaga gccacatatg catacgatgg aagatatttt acagagttga attttggata
     2041 taatggttca gaaaaatttg ctgaatcaca caggtttggt ttcttcccct ctgcaggttt
     2101 aggttgggcc gtttctaacg agccattttt tacatctgga cttaagaaag ttatttcgca
     2161 attgaaactg aaagctacct acggttatgt tggtaacgat gcaatatctg accctaaaga
     2221 tcgcttcttt tatatgtcct ctgtaaatat taatgatgga ggaaaaggtt attcgtttgg
     2281 aagtgaattt aacaattact atagtggata tagtgtttct cgctatgcaa atgctgacat
     2341 tagctgggaa atagcagaaa aaacgaatta cggtttagaa cttggcttat ttaataatgc
     2401 taccattcag attgactatt ttacagaaaa tcgttcaaac atttattggc caagaaatga
     2461 tgttcccgca acaatgggat taaccgctgg aatttccagt aatatcggta aagcgagatc
     2521 tcacggcatt gatggttctg ttgactacaa agtaagtgtc aataaagatt tatggattat
     2581 ttcgcgcgtt aactttacct acgcaactaa tgaactgata gaagccagcg aaccgccgta
     2641 tatgtatccc tatttgagta aaattggtta tcctatcaat caacaatggg gcttagtggc
     2701 tgaaagatta tttgttgatg agcttgatgt gattaattca ccatggcaat attccaaatc
     2761 agacaaaccc gaagatttga attacagtgc aggagatatt aaatatgtag atataaacga
     2821 ggatgggaag atagatgatg atgataaagt tgctatcgga tatcccactg ttcctgaaat
     2881 agtatatggt tttggagcct catcgggata caaagatttc gatttatcat tcttttttca
     2941 gggatctgcc cggtcatcat tttttataaa tccggcatca atatcacctt ttgttaaaga
     3001 acgaaatgcg ttaacgataa ttgcaaataa tcattggtct gatgagaatc ctgatccaaa
     3061 tgctttttgg ccgcgcttat cggttaatgc agttgcaaat aatgagaaat actcaacatg
     3121 gtggttgcgc aatggtgcgt tcctgcgttt gaaaagtgta gaatttggat attcactacc
     3181 aaccaaatta ttgaaaaaaa ttaatgtcga aaaagtccgg ttctatgcca gtggaaccaa
     3241 tctgttcgtg tttagcaaat ttgacttgtg ggatcccgaa atgggaggtg aagggttggg
     3301 ttatccacct cagaaaatta ttaatcttgg tgttaacgtg aatttttaat gcacttaatt
     3361 attgtaaaaa tgaaacatat aattttatat tcattacttt tttcgatgtt actgctcggc
     3421 agttgctccg attatttaga tgtagtacct gataaaacac aggagatatc acttctcttc
     3481 gagagacgcg aagcagccta taatgcgttg gccacatgtt atcattttct tccacaagaa
     3541 gatggcgtgt actcaacttc tgcatttgct tccgatgaac ttacaactcc cattcctaaa
     3601 gaaacacccg gagttgaact tatgcgagga aagcaaacgg cttcagaacc aataatgggg
     3661 ttatggaacg atacttatcc gtatggacgt aatcaggaat cactttataa ggcgatacgt
     3721 tgttgcaata tttttataga aaatattgat ttggtaaaag atatgaaagc cgaagaaaag
     3781 gcatcctgga aatctgaagc catttttctg aaagcgtact accatttttt attgttccgt
     3841 caatatggac caattccaat tgtagatata aatcttccta ttacggcaga tgtaaatgat
     3901 attcgggtta aaagaaaacc tgtggatgag gtaattgact atatagtttc aactattgat
     3961 aaatctgttg aaaatcttcc gttacgtatt acctcctcaa atgaccttgg tcgtattgat
     4021 caggtaatag cttactcaat taaatcgcgg gttttacttt atgccgctag tccattattc
     4081 aacggcaatg ctgcatttta tgatggcttc aaaaataagg atggagttag actttttaat
     4141 cctacttatg ataaagaaaa atggaagaaa gcattggatg ccgcagaatt tgctataaat
     4201 attgcgacaa ctaatggagt aaagatgtat gagtttagag gcgtaattcc aacttttgat
     4261 acattagact ataagcagcc tgaagtaaaa gcactttaca attacagata tatgtttact
     4321 gaaaagtgga acacagagct tatctggggt aattctgatc cagttaaaaa tggtgattgg
     4381 tggagtttac aagcggcatc gatgatgatt aaccccgatg cctctgccca ggctgctgcc
     4441 tggc
//
LOCUS       DATDNM010000328         2563 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_896480, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000328 DATDNM010000000
VERSION     DATDNM010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896480"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            521..1744
                     /locus_tag="VI413_05460"
     CDS             521..1744
                     /locus_tag="VI413_05460"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEY6914104.1"
                     /translation="MRKKEVIEFEQVVESGCGMDVHKDLIVATIQGKNIKTQTKSFKT
                     FTSSLIKLKEWLLQNGVTHVAMESTGVYWKPIFNVLGDDFKILLVNARHVKNVPGHKT
                     DKKDSRWLTKLLLSGLLKGSFIPERPIRELRDLTRYKTKLVNQISAERNRFQKILEDA
                     NIKLSSVLNDVFGATGTKIIHHILIHENYRPEELLQYVHGKVKADREDIKESLRGYIM
                     PHHRFMLKTIMENIARIESTVAEVNTQIEICIEPYKIERELLQSIPGVGIEGATGIIA
                     EIGVDMEQFPDQNHLASWAGVCPGSNETAGKNKSGRITHGDKYLRSLLVECGWAASRT
                     KNTYLSAKYKSLVGRRGKKRAIIALGHKILVATYFIIKDKVAFKELGEDHLNNFRKDR
                     LIAYYKQQLEKLTAA"
     gene            1993..>2563
                     /locus_tag="VI413_05465"
     CDS             1993..>2563
                     /locus_tag="VI413_05465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006797797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding domain-containing protein"
                     /protein_id="HEY6914105.1"
                     /translation="MSRLRSGLTVSICLILTMITWSLEGQPEKQSSRIIQNFDNGWRF
                     LKADATSAEIPAFDDSQWRKLDVPHDWSIEGPYDMTNPTGRGGGYLPAGIGWYRKSFI
                     LNESEAQKKFFIEFDGVMANSDVWINGFHLGKRPYGYIGFSYDLTDHLKFGKNESNVI
                     AVRADNSIQPASRYYTGAGIYRHVRLVTTN"
BASE COUNT          859 a          455 c          577 g          672 t
ORIGIN      
        1 gatagatgct tatcaaggga gattttggcg gtctcggacg atacaatgta tgtcagcaga
       61 acatctctgg gggaaatgac cggaattatt tatgaaaccc tcatgaacaa tcgttcgcaa
      121 aagggcatgt aaatgacctt gagggttcca tgagtacgtt ctgatattca ataaattaat
      181 actgatattt acgagtgaaa cgagcatgga ctaagtccac aaaaggtgat gtaaatccac
      241 ctgcgagttc catacgtacg aactgaattt caataattta acaatgatat ttacgtgtga
      301 aacgagcatg gactaagtcc acaaaaggtg atgtaaatcc atttgcgagt tccatgagta
      361 cttgctgata ttcaataatt taacaatgat atttacgagt gaaaccctca tcgctgaggg
      421 aataatataa agggagcagc tacaaaagtc catgtaatat ggtgctgctc ccaaaataag
      481 ctcttagttt taagttgtca aacgaaaatc accaagagct atgaggaaaa aagaagttat
      541 cgaatttgag caagtcgttg agtccggctg cgggatggat gtccacaaag atctgattgt
      601 agcaaccatt cagggcaaaa atataaaaac tcaaacaaaa agttttaaga cttttacaag
      661 ttctttgata aagttgaaag agtggttatt acaaaatggt gttacccatg tagcaatgga
      721 aagcacggga gtatattgga agccgatttt taatgtactg ggagatgact tcaaaatttt
      781 acttgtcaat gccaggcatg ttaagaatgt ccccggacat aaaaccgaca agaaagacag
      841 ccgttggttg accaagctcc ttttgagcgg tttgctcaaa ggcagtttta tccctgaacg
      901 cccgattcgt gaacttcggg atctgactcg ttataaaaca aaactggtta accagatttc
      961 ggcagaaaga aaccgttttc aaaagattct tgaagatgcc aatattaaac tttcgagtgt
     1021 tttaaatgat gtatttggtg caacaggcac aaaaattatc catcatattt taatacacga
     1081 aaattatcgg cctgaagagc ttttgcaata cgtacatgga aaggtgaaag ccgacaggga
     1141 agatataaaa gagtcgctga ggggttacat catgccacat caccgtttca tgctaaagac
     1201 tatcatggaa aatattgcca ggattgaaag cactgttgct gaagttaata cccaaatcga
     1261 gatttgcatc gaaccttaca aaattgagcg ggaactgttg caaagcatcc cgggagtcgg
     1321 tatcgaaggg gcaacaggaa taattgcaga aataggagtt gatatggaac agttcccaga
     1381 ccagaaccat ctggcatcct gggcaggagt ttgtcccgga agcaatgaaa cagcgggtaa
     1441 gaacaaaagc ggacgcatca cccatgggga taaatatttg cgtagccttt tagttgaatg
     1501 cggatgggca gcttccagaa caaaaaatac ttatttgagt gccaagtaca aaagcctcgt
     1561 aggacgaagg ggaaagaaga gagcaattat tgccttaggc cataagattt tagtagccac
     1621 ttattttatc atcaaagata aagttgcatt taaagaattg ggtgaagacc atttaaacaa
     1681 cttcagaaag gatcgtttaa tagcctatta taagcaacaa ttggagaaat taacagctgc
     1741 ataagctgaa aaatataagg tcgattttta ctgtatgtat aaacaacgag agtgaaactg
     1801 acctgatcag ttaaggacaa aagagtattg cctggagcat gagtatgaaa atttgaggac
     1861 tcctaactga tttttataaa atattgaaaa ttaagatttt agaatgatta attacgtatg
     1921 aaaaaagccc ctaaaccacg gatcgtcctg gtgaagtaga attagattaa taaatattca
     1981 aaaaatagaa atatgtcaag gcttagatcc ggtttaaccg tctccatctg tctgattctt
     2041 accatgataa cctggtcact ggagggtcag ccggagaaac aatcttcccg catcatacag
     2101 aattttgaca atggctggcg atttttgaag gcagatgcca cgagtgcgga aattcccgct
     2161 tttgatgatt cacaatggcg aaaactggat gttcctcatg attggagcat cgaagggcct
     2221 tacgatatga ccaatccgac cggcagaggc ggcgggtatc tgcctgccgg gataggatgg
     2281 taccggaaaa gttttatcct caatgaatcg gaagcccaaa agaaattttt tatcgaattt
     2341 gatggtgtta tggccaacag tgatgtttgg atcaacggat ttcacctcgg aaagcggccg
     2401 tacggttata ttggtttcag ctatgatcta acggatcatt tgaaatttgg caaaaatgaa
     2461 tccaatgtga tcgctgtcag ggcggataat tcgatccagc cggcatcgag gtattacacc
     2521 ggcgcaggaa tatatcgcca tgttcgtttg gtaacaacca aca
//
LOCUS       DATDNM010000329         2539 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_682800, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000329 DATDNM010000000
VERSION     DATDNM010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_682800"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..96)
                     /locus_tag="VI413_05470"
     CDS             complement(<1..96)
                     /locus_tag="VI413_05470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007486243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEY6914106.1"
                     /translation="MRKPPITIKDIARALNISPSTVSRALKNHPDI"
     gene            508..>2539
                     /locus_tag="VI413_05475"
     CDS             508..>2539
                     /locus_tag="VI413_05475"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6914107.1"
                     /translation="MKYNHFKLKLRSLVAMLVIFVFGQAANAQQISVSGIVKDAATGE
                     PILGASIIEKSTNKGVITNFDGAFTISVSTNSTLIIKYIGYSSTEVPVLGKTNLVIQL
                     KEDAVALGEVVAIGYGVQKKTDKTGAVMNVASSEFNKGVLTDPIQALQGKASGVQITK
                     KGGNPNDGFSVQIRGAGGFATGSNPLYVIDGIPGVDPTTIPSEDIESFNVLKDASSTA
                     IYGSRGANGVIIITTKKGSNKGGKNTIDVNSYVSMDQVSKRLDLLSASDIRSFITRNN
                     LSQVDPGGNTDWQNEIYRNGFTQNHNVAVGGGTENSNYRISGTWSDFQGVVKGTNKER
                     FTTTANVNQKLLNNKLLVEGGMAATFEENDYEDFGNNGQKDIMYQAFQRSPLQPVYNE
                     DGTFYENTPYGFQYFNPVAIISNIQNIRSAKRIRLNGSIQYEILNGLKAKVNGGYTRD
                     DSESFFFEPSDSPTSSTKGRGSRDYKNTTTKLLEAFINYDKTFDLHTLSAVGGYSWQG
                     QINDGFNAFGTNAQSKYLQSNNLKGLADVNHGSIGSYKNGWTIISFFGRAAYDYDKKY
                     FATLTVRRDGSSKFGKNNKWGTFPSGSLGWAIKEESFLKDVSWLDILKVRVGYGLTGN
                     TEGFDPYWSIPVIKATDMKPSLEDGVSNTVIYDTELNDNPNLKWETMQEVNLG"
BASE COUNT          889 a          410 c          470 g          770 t
ORIGIN      
        1 tatatcggga tggtttttca gcgcacgcga gactgtagag ggggaaatat tgagcgcacg
       61 cgcaatgtct ttaatagtga taggtggttt tctcattcgg tatctattta tgttcaatta
      121 taaaacagaa atcaaaacaa ctgacagaaa taagatataa ctctcaatta caatcactta
      181 aaatcaaaca aaaataaatt ttcgttcctg aaagttttat attcaaaata tcagttgcaa
      241 aattagaaca ctttatccga ataaaaaatt tttcgtataa ttatttaaaa atacaggtgc
      301 aaacgtttgc gttgaaattt tgaatcttta ttctgaaact tataaatatc taattagtat
      361 tgctctattt ttgtcccttg aaatgattaa caaacaattt attctggaac aaagaacttt
      421 ttaaacataa tcattgttaa agtatcaaaa taagttgttt gattttttat aaaacaatca
      481 caagtataac cttaaaaaaa ttaatgcatg aagtacaatc actttaagct aaaactacgc
      541 tcgcttgtag ccatgttagt gatatttgtt tttggccagg ctgccaatgc acaacaaata
      601 tcagtttccg gtattgtaaa agatgctgca acaggagaac caattctggg tgcaagtatt
      661 atcgaaaaaa gcactaacaa aggtgttatc actaattttg acggagcatt cactatctct
      721 gtttccacca actcaactct aataatcaag tacatcggtt attcttctac agaagtacca
      781 gttctcggaa aaacgaattt agtaattcaa ttaaaagaag atgcagtagc gcttggagaa
      841 gttgttgcaa ttggatatgg cgttcaaaag aaaaccgata aaaccggagc ggttatgaat
      901 gttgcttcat ctgagttcaa taaaggcgtc ttgaccgatc caattcaagc gttacaaggg
      961 aaagcatcag gtgttcagat tactaagaag ggtggaaatc cgaacgatgg attctcggta
     1021 caaataaggg gagccggagg ttttgctaca ggttcaaacc ctttatatgt cattgatggg
     1081 attccgggtg ttgaccctac tacaattccg tctgaagata ttgagtcatt taatgtttta
     1141 aaagatgcat cttcaactgc tatttatgga tctcgtggtg ctaacggtgt tattattatt
     1201 actactaaaa aagggagtaa taaaggtggc aaaaacacga tagatgtaaa ttcatatgta
     1261 tcaatggatc aggtatcaaa aagactggat ttgctttcag caagcgatat aagaagtttt
     1321 attacccgta acaatctttc tcaggtagat ccaggtggta acaccgattg gcaaaatgaa
     1381 atttatcgca atggctttac acaaaaccat aatgttgctg ttggaggagg aaccgagaat
     1441 tcaaattata gaatttcagg tacatggtca gattttcagg gagttgtcaa aggaactaat
     1501 aaagaaagat ttaccactac agccaatgtt aatcaaaaat tattgaataa caaattatta
     1561 gttgaaggag gaatggctgc aacttttgaa gaaaatgatt atgaagattt tggaaataat
     1621 ggtcaaaagg acataatgta tcaggcattt caacgttcac cactacaacc tgtatacaat
     1681 gaagatggca cattttatga aaacacacca tatggttttc aatatttcaa tccagttgcg
     1741 ataatcagta atattcagaa tatacgttcg gcaaaacgaa tacgattaaa cggttctatt
     1801 caatatgaga tattaaacgg actgaaagcg aaagttaatg gtggctatac acgtgacgat
     1861 tctgaatcat tcttctttga gccatcagat tctcctactt catctaccaa aggacgtggt
     1921 tcacgtgact acaaaaacac aaccaccaaa ttgttggaag cattcatcaa ttatgacaaa
     1981 acctttgatc ttcacacttt atcagcagtg ggaggttatt cctggcaagg tcagataaat
     2041 gatggcttta atgcttttgg cacaaatgct caatcaaaat atctgcaatc caataatttg
     2101 aaaggtttag ccgatgtaaa ccatggatca attgggtctt ataaaaatgg ctggacaata
     2161 atatcattct ttggaagagc tgcctacgac tatgataaaa aatactttgc aactctgact
     2221 gttcgtcgtg atggttcttc aaaatttgga aaaaacaata aatggggaac atttccttca
     2281 ggttctttag gatgggctat aaaagaagaa tcttttctaa aagatgtttc atggttagac
     2341 attcttaagg taagagttgg ctatggctta accggtaaca cagaaggatt tgatccctat
     2401 tggtcaattc ctgtaataaa agcaactgac atgaaaccat cccttgaaga tggtgtttct
     2461 aatactgtta tttatgatac agaattaaat gataacccta atttaaagtg ggaaaccatg
     2521 caagaagtga accttggtt
//
LOCUS       DATDNM010000330         7123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_682862, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000330 DATDNM010000000
VERSION     DATDNM010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7123
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_682862"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..939
                     /locus_tag="VI413_05480"
     CDS             <1..939
                     /locus_tag="VI413_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEY6914108.1"
                     /translation="RAGFIDSPLVDEYGKLLRSQLRETGCKVPEPPQKIRKIYLTHDV
                     DQLSHYRSLRGFMGGLLRGIQRPKEGNKAIKSYFGGLKNDPWYTLPWLFKLDNSVRQV
                     LGADRCQPIAFIKVGGGKRKEDKPFVTHHIQDFQTLINLCKKKNVTLGLHTSYEAGIN
                     LNRILDEKKHLERVSKREIAYNRNHYLNTREPEDMQALIDVGITDDFTLGYADIAGFR
                     IGTCRPVKWINPRTKELTSLTLHPLTIMDGSLSDKRYMFLNAHEAYEYCIRLINMVES
                     WNGELVLLWHNTSVENNAQSYHRKLYQDMIKYLRTK"
     gene            997..2082
                     /locus_tag="VI413_05485"
     CDS             997..2082
                     /locus_tag="VI413_05485"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6914109.1"
                     /translation="MQKTAIVCVTNDLSTDNRVHKTCMTLQKCGYWVIEYGRLLPESM
                     SLERSYFTLRKKLWFRRGPQFYAEYNIRLFLYLMTANVDLIFANDLDTLPAAYFAAKL
                     RKKRLIFDTHELFSEVPELVHRPLVKLFWKKTEDYILPKLPDTLTVCQSIAMHYNHAY
                     KTDMQVVRNAPNYNPQPDTKKILFPGKKIIIYQGALNVGRGLEWMLDAMPLVDNAVLV
                     IIGDGDIKQKLESQAKALKIEDRTQFVGKINAEKLHEYTSCADIGLCLLENKGLNYFY
                     ALPNRVFDYIHAGVPVLATRFPEIAAIVETYNTGTLIEHYEPEYLAATINNMLANPMN
                     TDHFETVAKELCWEKEEEVLMEIIKKD"
     gene            2086..2970
                     /locus_tag="VI413_05490"
     CDS             2086..2970
                     /locus_tag="VI413_05490"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6914110.1"
                     /translation="MLSILIPTYNQNITCLVTELHHQALEQYVDFEIIVMEDGSEKFI
                     GENKHVSEYEFCKHIVLTENIGRSAVRNKLADTAKYDHLLFMDCDAEVCSAHFVEKYL
                     TFCKEECVVIGGTAYDTNETNPDFSLRLKYGRKREARTAVERGKNNFATFNFLISKSI
                     FNKVRFDESIRGYGHEDMLFGHQLHQLGYDFIQIENPLIHKGLDDNRTFLRKTEEGTR
                     NLFLLYQTGRYPYLAEESKLLNTYIKIKKYGLVRLFALKFDATKHLFRWLLCRQSPSL
                     LLYDFYKILFLCKTSLTK"
     gene            3082..3933
                     /locus_tag="VI413_05495"
     CDS             3082..3933
                     /locus_tag="VI413_05495"
                     /inference="COORDINATES: protein motif:HMM:NF025865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEY6914111.1"
                     /translation="MSRNLDSLSMDIINAILQRKSCRTYNPGSLKPSDRKLLQEFIDT
                     HKTGINNESVDFILVEKNETEVPMKIPYGLITGNKTYILGKTLSTPIARTNYGYMLER
                     IVLKATEMKLGTCWVGLFDKEYFNDIQVEKELDIPSILVIGYAQEKMPVKEKLIRKAV
                     NADKRKPWETLFFNYESGEVLSPESVQPYEETLKMTRLAPSAGNTQPWRIFYSTTGNE
                     FHFYKKPINKSYDEKGMHDIDMGIAMCHFELVSAKNGLKGNWTKYPEEQLKLIDGLEY
                     ISTWKCD"
     gene            3987..4256
                     /locus_tag="VI413_05500"
     CDS             3987..4256
                     /locus_tag="VI413_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005858788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEY6914112.1"
                     /translation="MNIKPLADRVLVKPAPAEEKTISGIIIPDSAKEKPLKGKVLAVG
                     NGTKDEEMVVAVGNTVLYGKYAGQELEWEGEKYLIMKQSDIWAII"
     gene            4387..6018
                     /gene="groL"
                     /locus_tag="VI413_05505"
     CDS             4387..6018
                     /gene="groL"
                     /locus_tag="VI413_05505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005941147.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEY6914113.1"
                     /translation="MSKEILFNIEARDQLKKGVDVLANAVKVTLGPKGRNVIIEKKFG
                     APHITKDGVTVAKEIEIEDAFQNLGAQLVKEVASKTSDDAGDGTTTATVLAQSIVGVG
                     MKNVAAGANPMDLKRGIDKAVAQVVKSIGEQAKTVGDDYDKIEQVASISANNDAVIGK
                     LIADAMRKVSKDGVITIEEAKGTDTTIEVVEGMQFDRGYISAYFVTNTEKMEVEMEKP
                     YILIHDKKISNLKELLPVLEPAVQSGRPLLIIAEDVDSEALTTLVVNRLRANLKICAV
                     KAPGFGDRRKEMLEDIAILTGGVVISEEKGIKLEQATLEMLGTAEKVTVNKDNTVIVN
                     GAGAKDSIHTRVNQIKAQIASTTSDYDREKLQERLAKLAGGVAVLYVGAASEVEMKEK
                     KDRVDDALSATRAAIEEGIVPGGGVAYIRAIDSLSELKADNDDEETGIEIIKRAIEEP
                     LRQIVANAGKEGAVIVQKVREGKADYGYNARTDKYEHFFKAGVVDPAKVTRVALENAA
                     SIAGMFLTTECVITEKKEENPAPQMPMGGGMGGMM"
     gene            complement(6614..7084)
                     /gene="tnpA"
                     /locus_tag="VI413_05510"
     CDS             complement(6614..7084)
                     /gene="tnpA"
                     /locus_tag="VI413_05510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HEY6914114.1"
                     /translation="MANTYTQCYVHLVFSPKNREALISEIWKDELEKYITGIIQNRKH
                     KLLAIGAMADHIHMLIGYNINDLIPDLVENIKTSTNAWIKDKRLSKFKFEWQHGYGAF
                     THSRMQVDTVVNYILSQEEHHKKKSFKEEYLDILIKNGVEFKEEYLFDFFEDMD"
BASE COUNT         2334 a         1364 c         1504 g         1921 t
ORIGIN      
        1 cgggcaggat ttatcgattc acctttggta gacgaatatg gcaaattact aagatcgcaa
       61 ctcagggaaa ccggctgtaa agtgcctgaa ccgccacaaa aaattcgaaa aatttacctc
      121 acgcatgatg tcgaccaact atcacattac cgaagtttaa gaggttttat gggaggtctt
      181 ttacgtggca ttcaacgtcc gaaagaagga aataaagcaa ttaaaagtta tttcggcgga
      241 ttaaaaaatg acccgtggta tacattaccc tggttattca aactggacaa ctctgtaagg
      301 caggttttgg gtgcagaccg ttgccagcct atcgctttta ttaaagtggg tggtggaaaa
      361 agaaaagaag acaaaccttt tgtgacacat catattcagg attttcaaac acttattaat
      421 ctttgcaaaa agaaaaatgt cacactcgga ctgcatacaa gctatgaagc cggaataaac
      481 ctgaaccgga tattagatga aaaaaagcat ttggaacggg tatcgaaaag agaaatagcc
      541 tacaacagaa atcactactt gaacacgcgt gaacctgaag atatgcaggc gcttattgat
      601 gtgggcatta ccgacgattt cacactgggt tatgctgaca ttgccggctt tcggatagga
      661 acatgccgcc ccgtaaagtg gataaacccc aggaccaaag agcttacttc actgacacta
      721 catccactca ccattatgga tggaagcctg agtgataaac ggtatatgtt tttgaatgcc
      781 cacgaggctt acgaatattg tatccgcctg attaatatgg tagaaagctg gaatggcgag
      841 ctggttttgc tgtggcacaa cacttcagtg gaaaacaacg cccaatccta tcaccgaaaa
      901 ctgtatcagg atatgataaa atatctgaga acaaagtagg tgaataagaa gtataaagtt
      961 tatagttggt aaaattgttt attgatataa gagagaatgc agaaaacggc catagtttgc
     1021 gtaacaaatg atttaagcac cgataaccgc gtgcataaaa cctgtatgac gcttcagaaa
     1081 tgtggttatt gggtaattga atatggccgt ttgcttcctg agagtatgtc attggaacgc
     1141 tcttacttta cgctacgtaa aaaattatgg tttcggagag gtccgcagtt ttatgcagaa
     1201 tacaacattc ggttattcct gtatttaatg actgccaatg tcgatttgat ttttgctaac
     1261 gacctggaca cacttcctgc cgcatacttt gcagctaaac tccgaaaaaa aagactgatc
     1321 ttcgacacgc atgaattatt ttctgaagtt ccggaattag tgcaccgccc acttgttaaa
     1381 ctgttctgga aaaaaactga agattacata ttgcctaaac ttccggatac acttactgtt
     1441 tgccagtcta ttgccatgca ttataaccat gcatacaaaa ctgacatgca agtggtacgc
     1501 aatgctccaa actacaatcc tcaacccgat actaagaaaa tcttatttcc cggcaaaaaa
     1561 ataattatat accagggagc tttaaacgtt ggcagaggat tagaatggat gctggatgcc
     1621 atgcctttag tcgacaatgc cgtattggta ataattggag acggtgacat caaacaaaaa
     1681 ttagaatcac aagctaaagc attaaaaata gaagacagaa cgcagtttgt tggcaagatt
     1741 aacgctgaaa agctgcatga atacacttct tgtgccgaca ttggtctttg cctgcttgag
     1801 aacaagggac ttaattattt ttatgccctg cccaaccgtg tcttcgatta tattcatgca
     1861 ggagtacctg ttttagcaac ccgttttcct gaaatagcag ccatagtgga aacctataat
     1921 accggaacgc ttatagagca ttacgaacct gaatatctgg cagctactat taacaacatg
     1981 ctcgctaatc ctatgaatac cgatcacttt gaaactgtgg caaaagaact ttgctgggaa
     2041 aaagaagaag aggtattgat ggaaataata aaaaaagact aacccatgct ctccatactc
     2101 atccccacat acaaccaaaa tatcacatgt ctggtgacgg agctacatca ccaggcactg
     2161 gagcaatatg tcgattttga aatcattgtc atggaagatg gatcggagaa gtttatcgga
     2221 gaaaataagc atgtcagtga atatgaattt tgcaagcata ttgttttaac agaaaatatt
     2281 ggacgttcag ccgtgcggaa taagctggca gacacagcaa agtacgatca tttgctgttt
     2341 atggactgcg atgcagaggt gtgttcagca cattttgtgg aaaaatacct caccttttgc
     2401 aaagaagaat gtgtggtaat cggcggaacg gcttatgata cgaacgaaac aaatcccgat
     2461 ttcagcctgc gtctgaaata cgggcgtaaa cgcgaagcgc ggacagcagt ggaacgtggc
     2521 aagaataatt tcgctacatt caacttttta atttctaaat ccattttcaa taaggtacgt
     2581 tttgatgaga gtattcgcgg ctacggacat gaggatatgc tttttggcca tcagttgcat
     2641 cagctgggct acgattttat ccagattgaa aatccgctta tccataaagg actggatgac
     2701 aatcgcacat tcctccgcaa aaccgaagaa ggtacccgca acttgttttt gctttaccaa
     2761 accgggcgat atccgtatct ggcagaagaa tcaaaactgc tgaatactta tataaaaatt
     2821 aaaaagtacg gacttgtgcg tttatttgca ctaaaatttg atgcaacaaa acacttgttt
     2881 cgttggttac tttgccggca atcgccctca ctcctgctct acgatttcta caaaatactt
     2941 tttctgtgca aaacgtcgct gacaaaatga caaattaatg tcaaaactga caccagatat
     3001 acattggcac aaattctgac aagtaaagaa acggaaatta aaatccgatt ataatttcca
     3061 tgctagtaaa ccaacaaatt aatgtcacgt aatcttgatt cgctttcaat ggatattata
     3121 aatgcaattc tacagcgcaa atcgtgcaga acttataatc ccggaagttt aaaaccttcg
     3181 gatagaaagt tgttgcaaga atttattgat acccataaaa cgggaatcaa taacgaatcc
     3241 gtggatttta ttcttgttga gaagaatgag acggaagtac ccatgaaaat tccgtatggt
     3301 ttaattacag gaaataagac ttatatactc ggaaaaacac tttctacgcc tatagcccga
     3361 acaaattacg gatatatgtt ggaaagaatt gtgctgaaag ccactgaaat gaaactcggc
     3421 acctgctggg ttgggctgtt cgacaaggaa tatttcaacg atattcaggt tgaaaaagag
     3481 ctggatatac caagtatttt ggtgattgga tatgctcagg agaaaatgcc ggttaaagag
     3541 aaattaattc gcaaagcggt gaatgccgac aagcgcaaac cgtgggaaac actctttttc
     3601 aactatgaat cgggtgaagt tctatctcct gaaagcgttc aaccttatga agaaacactg
     3661 aaaatgaccc gtttggcacc ttcggcaggt aatacccaac cctggcggat attttacagc
     3721 acgacgggca atgaatttca tttttataaa aaaccgataa acaaaagtta cgacgaaaaa
     3781 ggaatgcacg acatcgatat gggtattgcc atgtgtcatt ttgaacttgt ctcggctaaa
     3841 aatggtttga aaggcaactg gactaaatat ccggaagagc aacttaaatt aattgacgga
     3901 ttagaatata tcagcacatg gaaatgtgat taaatataca gacaaaacta aatacaaatt
     3961 atatcattac taaattttta agcaatatga acattaaacc attagcagac cgcgtgttgg
     4021 taaaaccggc accggcagaa gaaaaaacga ttagtggaat cattattccg gattcagcaa
     4081 aagagaaacc gttgaaaggc aaagtactgg ccgtaggtaa cggaactaaa gacgaagaaa
     4141 tggtagtagc tgtaggcaac accgtattgt atggtaaata tgctggacaa gaattagagt
     4201 gggaaggtga aaaatacctg atcatgaaac aatctgacat ttgggcaatt atttaaaaac
     4261 actgccccct aaccccgtaa agggggaatt ggagagcaaa cttacaaaat aaaaaacaat
     4321 tttttaatct aaaaaaaacg cttaccctcg gcgaattccc cctttagggg gttagggggc
     4381 aaacttatga gcaaagaaat cttattcaat attgaagcgc gcgaccaact gaaaaaagga
     4441 gttgacgtgt tggcaaatgc tgtaaaagta acgcttggcc ctaaaggtcg taatgtaatt
     4501 atcgagaaaa aattcggcgc tccacatatc accaaagatg gtgttaccgt ggctaaagaa
     4561 attgaaattg aagatgcatt ccaaaacctg ggagcacaac tcgtaaaaga agtggcttcg
     4621 aaaaccagcg atgatgcagg tgacggaaca actaccgcaa ctgtattggc acagtcaatc
     4681 gttggcgtag gtatgaaaaa cgtggctgca ggtgcaaatc caatggattt gaaacgcggt
     4741 atcgacaaag cagtggctca agttgtaaaa agcattggcg aacaagctaa aaccgtgggt
     4801 gatgactacg acaaaatcga acaggttgct tctatttcgg ctaacaacga tgcagtaatc
     4861 ggtaaactga ttgctgatgc gatgcgcaaa gtatcgaaag acggtgtaat cactatcgaa
     4921 gaagctaaag gtaccgatac tactattgaa gtggtagaag gtatgcagtt cgaccgcggt
     4981 tatatctcgg cttatttcgt taccaatact gaaaaaatgg aagtggaaat ggaaaaacca
     5041 tacatcctta tccacgacaa aaaaatatcg aacctcaaag aattgcttcc ggtgttggaa
     5101 ccggctgttc aatcgggccg tccgttgttg attattgctg aagatgtgga tagcgaagcg
     5161 ttgactactt tggtagtaaa ccgcctgcgt gctaacctga aaatttgtgc agtgaaagct
     5221 cccggctttg gcgaccgtcg caaggaaatg ctggaagaca ttgcaatcct gactggtggt
     5281 gtggttattt cggaagaaaa aggtatcaaa ttggaacaag ctacccttga aatgttgggt
     5341 actgccgaaa aagttaccgt aaacaaagac aatacggtga ttgtaaacgg tgccggtgca
     5401 aaagattcga ttcacacccg cgtaaatcaa atcaaagcac aaatagcttc tacaacttcg
     5461 gactacgacc gcgaaaaact acaggaacgt ttggctaaac tggccggtgg tgtggctgta
     5521 ctttacgttg gtgctgcttc ggaagttgaa atgaaagaga aaaaagaccg cgttgacgat
     5581 gcattgagcg ctacccgtgc tgctatcgaa gaagggatcg ttcctggtgg tggtgtggct
     5641 tatatccgtg ctatcgattc gttgagcgaa ctgaaagccg ataatgatga tgaagaaaca
     5701 ggtatcgaaa tcatcaaacg tgccattgaa gaaccgcttc gccaaatcgt tgccaacgca
     5761 ggtaaagaag gtgccgtgat tgtacaaaaa gtgcgcgaag gcaaagccga ttacggttac
     5821 aatgcccgca ccgataaata cgaacacttc ttcaaagccg gtgtggttga ccctgcaaag
     5881 gttacccgtg tagcgttgga aaatgcggct tctattgcag gcatgttcct gactaccgaa
     5941 tgcgttatca ccgaaaagaa agaagaaaac cctgctccac aaatgcctat gggcggcgga
     6001 atgggtggca tgatgtaaaa tcaattgaca gttgatagtt gacaatgaac cattaattgt
     6061 caactgtaca ttgtcaactg tcaattaata aagaactatc ttcccgccgg cgaaatccgg
     6121 tggactacta tatataaaag gaaacccctt gctgctttcg ggctgcaagg ggtttttgat
     6181 ttaaacttag gagtgaaaaa tcttcgaatg aattgggtta ttcgggattt ttcgtttaat
     6241 gattgtggta atggaaagat tgagatctgg ttgagattat atttcggtac atccgtatat
     6301 ccggaatatc aaaacgaaat aggctcattt aatcttatca ttccggtgcg ctgcaccttc
     6361 caacgattta attgtttctt ggctacaaag attagcggtg cgctgcacct ttgattctat
     6421 agaccattta tttcgataaa taaaaattct acatcctata cttcacatgc aaagcaccat
     6481 tttatttata gtatttcagt gaatataata caaaaggtgc agcgcaccgc taatctttgt
     6541 agcaaattca gcaacccacg aaccagaggt gcagagcacc ggaatctttg tagtgcagag
     6601 caccgatatt ctatcaatcc atatcttcaa agaaatcaaa caaatattct tctttaaatt
     6661 caactccatt ctttatcaat atgtcaagat attcttcttt aaatgatttc tttttatggt
     6721 gttcttcttg acttagaatg taattcacga ctgtatctac ttgcattctg gaatgtgtaa
     6781 atgctccata gccatgctgc cattcaaatt tgaacttaga taatcgtttg tctttaatcc
     6841 atgcatttgt tgatgttttt atattttcga ctaaatcagg aattaaatca tttatgttat
     6901 atccaatcag catatggata tgatctgcca ttgctcctat tgccaataat ttatgctttc
     6961 tgttttggat gatgcctgtt atatatttct caagctcatc tttccaaatt tcagatatta
     7021 atgcctcacg atttttcggt gagaatacaa gatgaacata acattgggta taggtattag
     7081 ccattatttt ataattgaag atttatttcg gtgctctgca cct
//
LOCUS       DATDNM010000331         3253 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1965415, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000331 DATDNM010000000
VERSION     DATDNM010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3253
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1965415"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2979
                     /locus_tag="VI413_05515"
     CDS             <1..2979
                     /locus_tag="VI413_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase"
                     /protein_id="HEY6914115.1"
                     /translation="YAQINPLNYAKNKLDLCKRLTRIYQQSIDFPFIDEHGNSISKFV
                     NLDMEEYKDTELTLDVFKTVLSLPQFKKYRAGIVVQAYLPDAWNFQTELLEFARKRVK
                     EGGAPLKMRLVKGANLQMESIISSLKGWENPILHSKVEVDANYLHILDRALEPENAKA
                     MNIGVASHNFFSIGYAYLLSKKMNVEEQVTFEMLEGMANHLPRVMRKLDKQIILYTPV
                     VKTEHFLNAVSYLVRRLDENTGKDNFLSYSFGLKYDSKQWNFLKEQFVEAFEMKDNME
                     AKSYRTQNRLKNEEQEAKIKEKELSTFKNEPDTNFDLKPNRLWADKIREEWKKSPTDK
                     PYQVPVQVGENEFSTEKKHRYIDHNQAEEVCVCEASLADIEQVKQIISIAKTDASGWQ
                     KTPIDERNRILHKVATNLSKNRGHLIGCMSAITGKTFGEGDVEVSEAIDFCRFYPITM
                     KTFVDLKTVTCTPKGIVLVIPPWNFPLAIPVGGVAAALASGNTVILKPATVALPVAWE
                     FAKCFWAAGVPKDTLQVVCPGEREALNFLTSHQSIKHIILTGGTDTAFRILQNNPTCL
                     LYAETGGKNAIILTASGDRDHAIQNIVTSAFSNAGQKCSACSLLLLEKEVYNDPDFKT
                     KLTDAVTSIQTGSAWFGGNIVGPMITNENDKLLHAINNLEDGEWWLVKPEFVDQKRYI
                     LKPCVKWGVKPESYTFQNELFAPLLGVVCIDNLDHGIKLMNASEYGLTSGLQSLDEAE
                     QLRWKNGIEAGNLYINRGITGAIVNRQPFGGMKRSAFGGGIKAGGRNYVSCFVNITEN
                     PLANNETIDSKSFKSYSTVLDSSEKVRFLKAVESYQSNMENEFSQELDINNILGERNT
                     FRYLPLKKMGLRVQSGDNLCDVFMVLAAAKIAKTNLTISISKYDPKLATIQKCAGKDF
                     TIIVQTEPEFLVEMDKYERIRTCSLLQDECYRKAAKTGKYIASQSPIIEGRLELLHYV
                     KEQSIAFEYHRYGSITDDVK"
     gene            complement(3051..>3253)
                     /locus_tag="VI413_05520"
     CDS             complement(3051..>3253)
                     /locus_tag="VI413_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HEY6914116.1"
                     /translation="LTFKQQISTGGDGPRNFAITPDGQYVFVAHQFTDNIVIFKRDKK
                     SGELTDTGKRIEVGEPVCLVFY"
BASE COUNT         1068 a          682 c          686 g          817 t
ORIGIN      
        1 tacgcacaaa tcaacccgct gaactacgcc aaaaacaaat tagacctgtg caaaaggctg
       61 acccgcattt accaacaatc cattgatttt ccatttattg acgaacacgg aaattccata
      121 tctaaattcg tgaatctgga catggaagaa tacaaagaca ccgagctaac actggatgtt
      181 ttcaaaactg tactgagcct cccgcaattc aaaaaataca gggcaggaat tgtagttcag
      241 gcctatttgc ctgatgcatg gaacttccag accgagctac ttgaatttgc ccgaaaacgt
      301 gttaaagaag gtggcgcacc tctcaaaatg cgtctggtaa aaggcgctaa cctgcaaatg
      361 gaaagtatca tttcgtcgct caaaggttgg gaaaacccca ttctgcacag taaagtggaa
      421 gtagatgcaa attatctcca cattctcgat agagctcttg aacccgaaaa tgccaaagca
      481 atgaatattg gcgtagcgtc tcacaatttc tttagcattg ggtatgctta tttattgagc
      541 aaaaaaatga atgtggaaga acaggtcact ttcgaaatgt tggaaggcat ggccaaccat
      601 ctgccccggg taatgcggaa actcgacaaa caaataatcc tgtacacgcc ggttgtaaaa
      661 accgaacatt tcctaaatgc cgtttcgtat ctcgttcgcc ggctcgacga aaataccgga
      721 aaagataact tcctgagtta ctcattcggt ctgaaatacg acagcaagca atggaatttc
      781 ctgaaagagc aatttgttga agcctttgag atgaaggaca acatggaggc taaatcgtac
      841 agaacacaaa acagattgaa aaacgaggaa caagaagcca agattaaaga aaaagaattg
      901 tcaactttca aaaacgaacc ggataccaat tttgacttga aaccaaaccg gttatgggca
      961 gataaaatcc gtgaagaatg gaaaaaatcg cctacagaca agccttatca agttccggtc
     1021 caggttggcg agaatgaatt ttcaactgaa aagaaacatc ggtatatcga ccataaccag
     1081 gccgaagaag tttgtgtttg tgaagcgagc ttagccgaca ttgaacaagt taagcaaatc
     1141 atttccattg cgaaaaccga cgcttccggc tggcaaaaaa cgccaattga cgaacgcaac
     1201 agaatattgc acaaggtggc aacaaatctg agcaaaaacc gtggtcacct gataggctgc
     1261 atgtctgcaa ttacaggaaa aacatttggt gaaggcgatg ttgaagtttc cgaagcaatt
     1321 gatttttgcc gcttctaccc tattaccatg aaaacctttg tcgacctgaa aaccgtaacc
     1381 tgcacaccaa aaggcattgt gttggttatt ccaccgtgga attttccgct ggccattccg
     1441 gttggcggtg tggctgctgc tttagcctct ggaaacacag tcattctgaa acctgcaaca
     1501 gttgctttgc ctgtggcatg ggaatttgcc aaatgtttct gggctgccgg cgttcctaaa
     1561 gataccttgc aggtagtttg tcccggagaa cgtgaagcct tgaattttct gacttcacat
     1621 caatctatca aacatattat cctgacaggc ggaaccgata ctgccttccg cattttgcaa
     1681 aacaatccga catgccttct ctacgcagaa acaggaggaa aaaatgccat catcctaact
     1741 gccagtggcg accgtgacca tgctatccaa aacattgtta cttctgcatt cagcaatgcg
     1801 gggcaaaaat gttcggcctg ttcgttatta ctactcgaaa aagaagtgta caacgaccct
     1861 gatttcaaaa caaaactaac tgatgccgta acgagtatac aaaccggcag tgcgtggttt
     1921 ggcggcaata ttgtagggcc aatgattacc aatgaaaatg ataaactcct gcatgccatc
     1981 aacaaccttg aagatggcga atggtggttg gtaaaaccgg aatttgtgga ccaaaaacgc
     2041 tatattctga aaccttgtgt gaaatggggt gtgaaaccag aaagttatac attccaaaac
     2101 gaattatttg caccgttatt gggagtagtt tgcatcgata acctggacca tggaattaag
     2161 cttatgaatg caagtgaata tgggcttact tccggtttgc aaagcctgga cgaagcagaa
     2221 caactgcgct ggaaaaatgg aattgaagcc gggaatctct atattaaccg tggaattaca
     2281 ggagccattg ttaaccggca accgtttggc ggcatgaaac gctctgcttt tggcggtggc
     2341 ataaaagccg gtggacgaaa ttatgtttct tgttttgtaa acatcactga aaacccacta
     2401 gccaacaacg aaacaattga tagcaaatca tttaagtcat attcaacagt attagattcg
     2461 tcagaaaaag ttcgtttttt gaaggctgtg gaaagctacc aatctaacat ggaaaatgag
     2521 ttttctcagg aactggacat aaataatata ttgggagaac gaaacacgtt cagatacctg
     2581 cctttgaaaa aaatgggatt acgggtgcaa tccggcgaca atttgtgtga tgtatttatg
     2641 gtactcgcag ctgcgaaaat tgcaaaaaca aacctgacaa tcagcatcag caaatacgat
     2701 cccaaactgg caacaattca aaaatgcgct ggtaaggatt tcactattat tgtacagacg
     2761 gagccggaat ttttagttga aatggataaa tacgaacgta tccgcacatg tagcctatta
     2821 caagatgaat gttaccggaa agctgctaaa actgggaaat acattgcttc gcaaagccca
     2881 attattgaag gccgcctcga attgctccat tatgtaaaag aacaaagtat tgcctttgaa
     2941 tatcaccgtt atggaagtat tacggatgac gtgaaatagt ggaaaattca gaaactaaaa
     3001 caaaaaaaga gagcgactcg ataatttata ttgagccgct ctctttatat tcaataaaaa
     3061 accaaacata ccggttctcc aacttcaatc cgctttcctg tatcggtgag ttctccggac
     3121 tttttatcgc gtttaaatat cacaatatta tcagtaaatt gatgagcaac aaacacatat
     3181 tggccatcag gggtaattgc aaaattccgc gggccatcac ctccggtcga aatctgttgt
     3241 ttaaatgtta gct
//
LOCUS       DATDNM010000332         2061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_469928, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000332 DATDNM010000000
VERSION     DATDNM010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2061
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469928"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VI413_05525"
     CDS             complement(<1..490)
                     /locus_tag="VI413_05525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009133025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914117.1"
                     /translation="MQAGKSTGQISGAGVYTRKEKTGRLQGENPKIGIRPTIDARQGG
                     VRESLEAQTMNMAKNLAVFISSTLKYSDGTPVECVIADTTIGRVDEAAACAEKFKLSG
                     VGATITVTPAWCYGSETIDMDPQMPKAIWGFNGTERPGAVYLAAALAGHNQKGIPAFG
                     IYG"
     gene            complement(575..1558)
                     /locus_tag="VI413_05530"
     CDS             complement(575..1558)
                     /locus_tag="VI413_05530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008769203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY6914118.1"
                     /translation="MDIKFSHSTSKTKAIADGISLAIMQGDLKVGDNLLSINEASTRY
                     DVSRDTVFKAYKMLKSRGVIDSNPMKGYFVTGEVNHVLLLLDTYSSFKQNLYRRFAAS
                     LPENYKVDLIFHQYNEQLFETIVHESIGKYSMYVVMNFSNDHLSDTLRSIPVNKLLLL
                     DFGNFEKSEYSYICQDFDESLYNCLNEGANSLSKFKKLTYIFPEELCHPISSIDYFKK
                     FCLEHNFEYEIQRKESDWKGVEVGTAYLCILSEDLVKIIKDADIAGLSIGNDIGLIAY
                     NDESVLEVIKNGISAISIDFGLMGEKAASFVKTKQPIQEYLETKLIIRNSI"
     gene            complement(1683..>2061)
                     /locus_tag="VI413_05535"
     CDS             complement(1683..>2061)
                     /locus_tag="VI413_05535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6786 family protein"
                     /protein_id="HEY6914119.1"
                     /translation="GGKRGKIGTPPSMTIPMAGAYDAENGTLTIVKFNFDASNDVYVN
                     SMWEYQDEPFKGDVINSYNDGPLEDGSIMGPFYEIETSSPAANLKPDKSLVHNHTTMH
                     FKGDFEQLNDIAKQTLGVDLNEI"
BASE COUNT          572 a          449 c          377 g          663 t
ORIGIN      
        1 gaccataaat gccaaacgca ggaattcctt tttggttatg accagccaac gcagctgcca
       61 gataaacggc tcccggacgt tcggttccgt taaatcccca gatagctttt ggcatttgcg
      121 gatccatatc aatggtttca cttccgtagc accaggccgg agtaaccgta attgtggcac
      181 caacaccgga tagtttgaat ttttcggcac aagccgccgc ttcatctaca cgaccaatgg
      241 ttgtatcggc aataacgcat tccaccggag ttccatcact gtatttcaac gtggaactta
      301 taaaaacggc taagttttta gccatattca tggtttgagc ttccaatgat tcgcgcacgc
      361 caccctgacg ggcatcaata gttggacgaa ttccgatttt aggattttca ccttgtaatc
      421 ttcctgtttt ttctttacgg gtataaactc cggctcccga aatttggcct gttgattttc
      481 ctgcttgcat agtttttttt aatattaaag tttttatgtt tttatttata attgtgctga
      541 actgtgctgt ttataatcca aaaaaaggtg ataatcagat tgaatttctg attatcaatt
      601 ttgtttccag atattcctgt attggttgtt ttgtttttac gaatgaagcc gctttctcgc
      661 ccattaaccc aaaatcaatg ctgatagcgg aaattccatt cttaatcact tccagtacag
      721 actcatcgtt ataagcgata agtcctatat cgttgccaat actcaatccg gctatatccg
      781 catcctttat tatttttacc agatcttcgg acaagatgca caaataggct gttccaactt
      841 ctactccctt ccaatcagac tcttttcgct gaatttcgta ctcaaaattg tgctctaaac
      901 agaacttttt aaagtaatca atagaactta tcgggtggca aagctcttcc ggaaatatgt
      961 aagtcagttt tttaaatttg ctcaatgaat tagctccctc attcaggcaa ttataaagtg
     1021 attcgtcaaa atcctggcag atataggaat actcagattt ttcgaaattt ccaaaatcga
     1081 gcagtaataa cttattcacc ggaatggacc tcaacgtgtc ggacagatgg tcgttcgaga
     1141 aattcatcac cacatacatg ctatacttgc ctatactttc atgaacaatt gtttcgaaaa
     1201 gctgctcgtt gtattgatgg aaaattaaat caactttata attctcaggc agactcgcgg
     1261 caaaacggcg atagagattt tgtttgaaag acgaatacgt atcgagcaac agcaacacat
     1321 gattcacttc ccctgtcaca aaatagcctt tcatcggatt tgaatcaatc acaccacggc
     1381 ttttaagcat tttgtaggct ttaaaaacgg tatcgcgcga cacatcgtag cgcgtacttg
     1441 cctcatttat agatagtaaa ttatcaccca ctttcaaatc gccctgcata atggcaagac
     1501 taatcccatc ggcaattgct ttggtttttg aagtggaatg tgagaatttt atatccatga
     1561 gattctgtgc tgaactgtgc tgtaaaaata acggatttta ttgtaatccg atcataaaat
     1621 ttcatgttct acagcatatt tcaaaaaaca aaagcttccg ttttaagcgg aagcttttgc
     1681 ttttagattt cattcagatc aacacccagg gtttgttttg caatgtcatt gagctgctca
     1741 aaatcacctt taaagtgcat cgtggtatga ttatgtacca gcgatttgtc gggtttcaaa
     1801 ttggctgccg gcgatgaggt ttcaatttcg taaaatggtc ccataatgct gccatcttcc
     1861 aatgggccat cgttgtagga attaatcaca tcacccttga aaggttcgtc ctgatattcc
     1921 cacatcgagt ttacatatac atcgttcgat gcatcaaaat tgaattttac gatagtcaac
     1981 gttccgtttt cggcatcgta cgctccggcc attgggatgg tcatcgacgg tggagttcca
     2041 attttaccgc gtttgccacc a
//
LOCUS       DATDNM010000333         2639 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1109551, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000333 DATDNM010000000
VERSION     DATDNM010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1109551"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..1589)
                     /locus_tag="VI413_05540"
     CDS             complement(78..1589)
                     /locus_tag="VI413_05540"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HEY6914120.1"
                     /translation="MKASKRMKMLGFFGLVVAVSVATNLTTNYVASKQTDGFKGQENQ
                     IPAAYAKFSKAASGLETDFTVAAELSVHAVVHVKTKTPVKAQQFGGGFPNDPFFDYFF
                     GRPQQVPNKPKETPMQEGVGSGVIISNDGYIVTNNHVVDGSSEIEVTLNDKRTFKAKL
                     IGADPSTDIALIKIEAEKLPVILFGNSDSLKVGEWVLAVGNPFNLASTVTAGIVSAKA
                     RNINIINSQMKIESFIQTDAAVNPGNSGGALVNTRGELVGINTAIASQTGSYAGYAFA
                     IPVSIVQKVVADLRQYGVAQRAMLGVEIRDINSELAKEKNLKTLEGVYIGKVTDNSAA
                     KKAGVKEGDIINNVNGVSVKSATELQEQIGRYRPGDKITVTVVRKDSEEKLTVELKNR
                     QGNTGVVSSSNSSDALGATYKEINDKTRQQLGLDYGLEIKSLSKGKFADAGIKPGFII
                     MKINNQAIRTEQDVQVAYDAAINNGEPEKVFYIAGVYPNGKITYYAINLVDEK"
     gene            complement(1882..>2639)
                     /locus_tag="VI413_05545"
     CDS             complement(1882..>2639)
                     /locus_tag="VI413_05545"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009291773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000015 - phosphopyruvate hydratase
                     complex [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEY6914121.1"
                     /translation="KEGLRMGAEVFHSLKKVLHDKGLSTAVGDEGGFAPNLAGGTEEA
                     LESILTAIKNAGYKPGSDVTIGLDCASSEFYKNGIYDYSKFEGPNGKKRTSAEQTDYL
                     AELVANYPIDSIEDGMGEGDWDGWKLLTDKLGKKVQLVGDDLFVTNVDYLKKGIDMGC
                     ANSILIKVNQIGTLTETLDAIEMAHRAGYTSVTSHRSGETEDSTIADIAVATNSGQIK
                     TGSLSRSDRMAKYNQLLRIEEELGDLAVYGYKK"
BASE COUNT          757 a          593 c          434 g          855 t
ORIGIN      
        1 attgatgata aaacgacaga acaggagcaa cattgttacg cctgttctgt ttttaagcta
       61 atttatgaat aatcaattta cttttcgtct acaaggttaa tcgcataata agtaatcttt
      121 ccatttggat aaacacctgc aatataaaat accttttcgg gctcaccgtt attgattgca
      181 gcatcataag ccacttgaac atcttgctct gttctgattg cctgattatt gattttcata
      241 ataataaatc caggcttaat tccggcatca gcaaatttcc cttttgacaa agatttgatt
      301 tccagaccat aatccaatcc taattgctga cgtgttttgt catttatttc cttataagtt
      361 gcccctaatg catcgctact gtttgaagac gaaactaccc ccgtatttcc ctgacggttt
      421 ttgagttcga ctgttagctt ttcttctgaa tcttttcgaa caacagtaac agtgattttg
      481 tcgccaggac gatagcgacc gatttgttcc tgaagttcag tagctgattt tacagaaaca
      541 ccatttacat tattaataat atcgccttct ttcactccag cctttttagc tgcagaatta
      601 tcagtaactt tacctatata aactccttca agagttttaa ggttcttttc tttggctaac
      661 tccgaattta tatcccgaat ttcaactccg agcatcgcac gctgtgctac gccatattga
      721 cgaagatcag ccactacttt ttgaacaata cttacaggga ttgcaaacgc ataacccgca
      781 taagaaccgg tttgtgaagc tattgcagtg tttataccaa ccaattcgcc tcgagtgttg
      841 accaatgctc ctccgctatt acccggattc acagcagcgt ctgtctggat aaacgattct
      901 attttcattt gcgagttgat gatattaatg tttcttgcct tggcactgac tatacctgcc
      961 gtaacagttg atgccagatt aaacggatta cccactgcca acacccactc gcccactttc
     1021 aatgaatcag agtttccgaa caaaattacc ggaagctttt ctgcttctat tttaatcagg
     1081 gcaatatcgg tacttggatc ggctccgata agttttgcct tgaaagtccg tttatcattc
     1141 agagtcactt caatttccga cgaaccgtct acaacatggt tatttgtaac aatgtaacca
     1201 tcgtttgaaa taatcacacc cgaaccgaca ccttcctgca tcggtgtttc tttaggttta
     1261 tttgggactt gttgggggcg accgaagaaa taatcgaaaa acggatcatt tggaaatcct
     1321 cctccaaatt gttgagcttt tactggtgtt ttcgttttca catgaaccac cgcatgaaca
     1381 gacaattcag ctgccaccgt aaaatcggtt tccagaccgc tcgctgcctt tgaaaatttg
     1441 gcataagctg ccggaatttg attttcctga cctttaaatc catctgtttg cttgctggct
     1501 acatagtttg ttgtcaaatt agttgccaca ctcactgcta cgactaaacc gaaaaagccg
     1561 agcattttca ttctttttga tgctttcatt tttttcaatt ttataattaa taattgtttg
     1621 atgacaaaag ttgaattaat atacgcggta tgtaaattat taagtttacc gctacgaaaa
     1681 taaacaaaag tcattccctc aagtctaagc tacattgata tttggcgatt attaacacac
     1741 ccgttttttc gcttaacgcg cattaactaa gcggaaaatt ttcctaaaaa aagctgaaaa
     1801 tttcaaacaa aaaaagctac cttaatgaca ggtagctttt tcttgaagca aaattgtcag
     1861 aaataaatct gacatttttt cttatttttt gtaaccgtaa acagctaaat ctcccaattc
     1921 ctcttcaata cgaagcaatt gattgtattt agccatacga tcagaacgac tcaatgaacc
     1981 ggttttaatc tgaccggaat tggtcgcaac agcaatatcg gcaatggttg aatcttcagt
     2041 ttcacccgag cggtgtgaag taacagaagt ataacctgca cggtgagcca tttcaatagc
     2101 atctaatgtt tcagtcaatg ttccaatttg atttacttta atcaaaatgg agttggcaca
     2161 acccatatca ataccctttt tcagataatc aacattggtt acaaacaagt cgtcgccaac
     2221 caactgaact tttttaccca gtttgtcggt cagcagtttc cagccatccc aatcaccttc
     2281 gcccatacca tcttcaattg aatcgatagg ataattggca accaattcag ccagataatc
     2341 agtctgttct gccgatgtac gttttttacc gtttggtcct tcgaatttag aataatcgta
     2401 aattccattt ttgtagaatt cagaagaagc acaatccaat ccaattgtca catcggatcc
     2461 gggtttgtaa ccggcatttt ttatggcagt cagaattgat tccaacgctt cttcagttcc
     2521 acctgccagg tttggagcaa aaccgccttc gtcgccaaca gcagtactta atcctttgtc
     2581 atgcaatact tttttcaatg aatggaaaac ttcggcaccc atacgcaaac cttccttaa
//
LOCUS       DATDNM010000334         2167 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1324498, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000334 DATDNM010000000
VERSION     DATDNM010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1324498"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..578
                     /gene="hisB"
                     /locus_tag="VI413_05550"
     CDS             <1..578
                     /gene="hisB"
                     /locus_tag="VI413_05550"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005846279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HEY6914122.1"
                     /translation="RTATVKRTTKETDIFIDLNLDGSGKCNIDTGLKFFDHMLEQIGR
                     HSGSDLTINVKGDLEVDEHHTIEDTAIALGEAFGKALGNKRGIERYGFYLPMDDCLCS
                     VALDFGGRAWLVFDAEFKREYIGDLPTEMIYHFFKSFSDAARMNLNIKADGANEHHKL
                     EGIFKALAKSIKMAVKRDIYQYELPSTKGML"
     gene            613..>2167
                     /locus_tag="VI413_05555"
     CDS             613..>2167
                     /locus_tag="VI413_05555"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY6914123.1"
                     /translation="MRLFLRIIPSVILFLTFSLSASAQPSAAERPRLVVGIMVDGLQQ
                     KHIDLLWNYFDPNGFKKIIGQGANCQNISYNIVSAGNASDIATVMTGSTPYYNGVVGN
                     NYFSRSEDNVVSIIQDDNQIGIGTKQTLSAHNLLSSTIADEIMLANPGKSKSYAVALG
                     AEEAIMMGGHTAKSVAWIDDVNLKWITTGYYADGLSRWADEMNVNGTFQNYMARTWGP
                     MFNINTYLSKPNREDKKWGFYYDPATKKNKNSQVSILKTTPSANGLVTELGLKIFEQE
                     QLGTDIYPDILLLQFTVRTPFEKTTALQSAEKEDIYLRLDKEIQNILQKIDVKVGLDK
                     TLVFMFGNQTQVHSPAELGENKIPAGYFNADRSLALLSTYLMAIYGQEKWISGYYGKN
                     IFLNKEKIAAKKLNFSDFQKTVAEFMLEFEGIQTAFPSPVVLNMSGDSNSELARLRNS
                     TNKNSVGDVIITLLPGWIEVDNKNNPVGESNAIVSYTPLYFYGWKVKPQTVSGSYQTT
                     DIAPTISRIM"
BASE COUNT          674 a          438 c          478 g          577 t
ORIGIN      
        1 agcgtaccgc cacggtaaaa cgcaccacca aggaaaccga tattttcatt gatctgaatc
       61 tggacggttc agggaaatgc aacattgata ccggcctgaa attcttcgac cacatgctgg
      121 agcaaatcgg aagacactcc ggatccgacc tgaccatcaa cgtaaaaggc gatttggaag
      181 tagacgagca ccacaccatt gaggatacgg ccattgcact tggcgaagct tttggcaaag
      241 cactgggcaa taaaagagga atcgaacgtt atggttttta tttgcccatg gacgattgct
      301 tatgctcggt tgcactcgat tttggaggac gtgcgtggtt ggttttcgac gctgaattca
      361 aacgcgaata tatcggtgat ttgcctaccg aaatgattta tcatttcttc aaatcgttca
      421 gcgatgcagc acgcatgaac ctgaacatta aagcagatgg tgctaatgag catcacaaac
      481 ttgaaggcat tttcaaagca ttggcaaaat cgataaaaat ggcggtaaaa cgcgacattt
      541 atcagtacga gctgccaagt acaaaaggca tgctttgatt tacaatttat tgacttacga
      601 tttacatttg aaatgagatt attcctgcgt attattcctt ctgttatttt attcctgact
      661 ttcagcctga gtgcatcagc acaaccttct gccgccgaac ggccacgttt ggtggttggc
      721 attatggtgg atggattgca gcaaaaacat attgatttgc tttggaacta ttttgacccg
      781 aacggattca agaaaattat cggtcagggt gcaaactgcc aaaatatttc ctacaatatt
      841 gtttcagcag gaaatgcttc ggacattgcc acggtaatga ccggctctac accatattat
      901 aacggcgttg tgggcaataa ttatttcagc cgcagcgaag acaatgtcgt atctattata
      961 caagacgaca accagatagg tattggaacc aaacaaactt tgtctgcaca caacctgctt
     1021 tcgagcacca tagccgatga aatcatgttg gcaaatcccg gaaaatcaaa atcgtatgct
     1081 gtagccttgg gtgccgaaga agctattatg atgggtggac acacggccaa aagtgtagca
     1141 tggattgacg atgtgaacct taaatggatt actaccggat attatgccga cggactttcg
     1201 cgttgggccg acgaaatgaa cgtaaacggt actttccaga attatatggc caggacctgg
     1261 ggacctatgt tcaatataaa tacctattta tcaaagccaa accgcgaaga taaaaaatgg
     1321 ggattttatt acgatccggc aacaaagaaa aataaaaaca gccaggtttc catactaaaa
     1381 actactccat cggctaatgg gctggttact gaattgggtt tgaaaatctt tgagcaggaa
     1441 caattgggaa cagatattta tccggatatt ctgttactgc aattcactgt gcgaactcca
     1501 tttgaaaaaa caacggcttt gcaatctgct gaaaaagagg atatctattt gcggctcgac
     1561 aaagagattc aaaacatatt gcaaaaaata gatgtgaaag ttgggctgga caaaacgttg
     1621 gttttcatgt ttggaaacca gacacaggtc cattctcccg cagaactggg cgaaaataaa
     1681 attccggctg gatatttcaa tgctgaccgt tcgctggcat tgctaagcac ttatttgatg
     1741 gctatttacg gtcaggaaaa atggatttca ggatattatg gcaaaaacat ttttctgaac
     1801 aaagaaaaga ttgcggcaaa aaaactgaac ttcagcgatt ttcagaaaac ggttgcagaa
     1861 tttatgctcg aatttgaagg aattcaaacc gcatttccat cgcctgtggt gctgaatatg
     1921 agtggagatt ccaattctga actggccaga cttcgaaatt ctaccaacaa aaacagtgtt
     1981 ggagacgtga taatcacatt gctacccggc tggattgaag ttgacaacaa aaacaacccg
     2041 gtaggtgaat caaatgccat tgtttcgtat acaccgcttt atttctatgg ttggaaggtg
     2101 aaaccacaga cagtttctgg ttcttatcag actaccgata ttgccccgac tatttcgcgg
     2161 ataatgg
//
LOCUS       DATDNM010000335         7265 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1858195, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000335 DATDNM010000000
VERSION     DATDNM010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7265
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1858195"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..980
                     /locus_tag="VI413_05560"
     CDS             <1..980
                     /locus_tag="VI413_05560"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914124.1"
                     /translation="PYASYLDWSKVDTAAAKTLSTIWYRTQTAGNAYTFDTYNGSGNV
                     STNLGATKVTNLIPPMQAFWVRVKQGESGGTLTFTNAMRAHGDYSTNIFKAPSAKTTT
                     RQLVRLEVSTDVNRDETLIYFNENASNGYDAFDSPKMSNGSASIPEIYTNAGNEKLVI
                     NGMKNVTDDIELSLGFTTGQANSFSIKASEVTNLNDVDIILKDKLLNKEFNLLSGDTY
                     SFTSDVVTTDLRFAVLFKTRSVNTALEPVSNGAKVYARANKGRITFINGNEPGVIIPV
                     VIYNNAGQQVSNFNLNQSKTMLADRFAPGVYVVSFKSKQGISTQKIIVD"
     gene            1018..1203
                     /locus_tag="VI413_05565"
     CDS             1018..1203
                     /locus_tag="VI413_05565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914125.1"
                     /translation="MKTYLYNTEKREYITPVILVVGLDNEISLQLESAPPVPGNEGIS
                     AVPEFFDQNPFNVENCC"
     gene            1431..1925
                     /locus_tag="VI413_05570"
     CDS             1431..1925
                     /locus_tag="VI413_05570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914126.1"
                     /translation="MKKKFSFIFLFGLSMALQLVAQTPNAFNYQAVARSMTGTILKSQ
                     SVNVRFTLHKTTAEGTTVFQETQTAVTTDSGLISVQIGTGTPTSGSFGLGEIDWTTGV
                     YFMQVEIDNGTGYNTLSTQQLLSIPYAKYAQAAGNVRIKSPDGSTWNVTISNTGSIAA
                     TKVQ"
     gene            1946..2392
                     /locus_tag="VI413_05575"
     CDS             1946..2392
                     /locus_tag="VI413_05575"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914127.1"
                     /translation="MNKIITCIAILLLITLQTFSQQLIGTAGQQQNNVSWSIGEIVNA
                     EGSVSGLFFSQGLYSSENFIFTDVPHVSLSTISAYPNPVLDKLYVKNSESGYYTCTIT
                     DIVGRVWINNKVDTDQEIDLSHFASGQYILKVSTSQFSKSTIIIKR"
     gene            2401..3630
                     /locus_tag="VI413_05580"
     CDS             2401..3630
                     /locus_tag="VI413_05580"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEY6914128.1"
                     /translation="MKKLYIILICSIFTLQLIAQSPNAFRYQAAVKDNNGVLVIGASV
                     KFRFEIFKTALEANGGTKVYSEVQQTTTPSTGLVNLLIGKGTPESGTFSTIDWSANSY
                     YIRVSIDRGSGYVLIGEQQMLTTSYAQFADATGNVVKTIPDGTVWGMAVDNSGNLTTV
                     PFPKGYTKMVWNDEFNGSGLPDDSKWDYEQGYVRSSELQYYAKKRVENSYQQDGLLHL
                     VARQDSGIIDGAMRPMSSASIITKGKAAWLYGYVEVRAKMPYLAGIGTWPAIWMMPND
                     DFYGGWPRSGEIDNMEYVASDYRYVHFSQHSYKYNNIDGANLQKTTKAYCPTAYSEFH
                     TYGLQWTPETMIWYLDGVQKFKVNNVEHLWSSWPFNKPYYLLLNLAMGGWGGTTNYTL
                     LKNNPQDYQIDYVRIFQ"
     gene            3653..5251
                     /locus_tag="VI413_05585"
     CDS             3653..5251
                     /locus_tag="VI413_05585"
                     /inference="COORDINATES: protein motif:HMM:NF041518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor Q domain-containing protein"
                     /protein_id="HEY6914129.1"
                     /translation="MKSRQLLILCFWAAGIFTVFANKTIYVAPAASGTGSGIDAANPC
                     TFPTALGNLDATGYTTLVLPNATLFQLSGGTNGYGRIPVVDNSKIIIEGNNSILEGNG
                     GETRILRASTGCVVELKNLTFRLGNAAASLGGAIFFGGDSLKIAGCVFESNTADNGAA
                     IGSRGKYIKITNSWFKDNYLRSSFQGGAISHTGTTSGGKLIIENTTFSNNNGKAANAA
                     YGTAIITAFDGNVRNYLSEISITNCTFYKNNSGLNTHVGDAAIQLDFLGTTAPVGTAT
                     TATFVNNTFYGNQNCAINVKGKQQALSLINNAIVGDSWANVSTTGVQDHGIICEYSVA
                     EGRPALVAKNNYIVAKFPKSTKTDDAALASGNADNNILITTASQNDIDALGLSTSLST
                     SGSVVPYLSVSSSSSPLVEGGVNAVSGIAMFSTDTRGVVRASGTTGSKYDIGAYEFEN
                     LTTAVQGVSTDSFTFNQSIGEVSVINSNNRILTVTVYLPNGQSVYTKTTNGTLTINKT
                     QLPKGVLVCIVNDGGKSVAKKIIN"
     gene            5278..6849
                     /locus_tag="VI413_05590"
     CDS             5278..6849
                     /locus_tag="VI413_05590"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914130.1"
                     /translation="MKKKIILGLAALWVSFTVSAVDIYVNPTTGNDANNGSQAAPMKT
                     IESAVFAVKDNTQTTIHIAKNSVFVLGAVLNLGENKKLEIVGPNVTIKAAELAAQKDP
                     SGLPLLGQGNRILRAVANCDLKIKGITFQNGRQVGYILGGGIYFAGNTLEIDSCKFID
                     NQAGSAGGAVGCRAKSVVIKNSYFEGNNILGGGARGAAIMQCGPATGTPGTLVVQNCT
                     FYKNMTQVGGSGMVINIFDSTDSGVGGKYSNMGSIQVTGCTFLENTSPTAYQAAIDVS
                     DSDCGVVLVNNTFYNNSDGAFRLLLSKAYLANNVIVGGKQGILSEAKVADGRPEMVAV
                     NNIVIGTEGGINGGIDDACFTTAASANSNVVSKIASYPVAALGLATSLSTDNFVPYLK
                     ITSATSTLIDAGIDNTLAKFGTNYVLTNDVIGRSTNNKKDIGAYEYNGITGFSLPEYV
                     NENYRISQSENTITVKNISDKSFSMSVVNMTGKVVYSTQVTSSVELSKNKFGKGVFIL
                     LFNDGTKSGSKKVIF"
     gene            6956..>7265
                     /locus_tag="VI413_05595"
     CDS             6956..>7265
                     /locus_tag="VI413_05595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914131.1"
                     /translation="MKKLLLSITALFATLSLSAVDIYVSPAKGNDANNGTMAAPMKTI
                     ESAVFAVKDNTQTTIHIESNATVVLGAKLNFGQNKKVEIVGRNVTIKASLLAAQKDPS
                     G"
BASE COUNT         2334 a         1303 c         1496 g         2132 t
ORIGIN      
        1 atccttatgc ttcttatctc gactggtcta aagttgacac ggctgctgcc aaaactcttt
       61 ctaccatttg gtacagaacg caaactgctg gtaatgccta cacctttgat acttacaacg
      121 gcagcggaaa tgtcagtaca aatctgggtg ctacaaaggt tacaaacctg attcctccca
      181 tgcaggcatt ttgggttcgg gtgaagcaag gtgaatcagg cgggactctt acatttacga
      241 atgccatgcg tgcacatggt gactatagta caaatatatt caaagctccg tctgctaaaa
      301 ccacaacccg gcaattagtg cgtctggagg tgtcaaccga tgtaaatcgc gatgaaacac
      361 tgatttattt caacgaaaat gcttccaacg gatatgatgc gttcgattca cccaaaatgt
      421 caaacgggag tgcttcaatt ccggaaatct acacaaatgc cggtaatgag aaattagtca
      481 taaacggcat gaaaaacgta accgatgata ttgaattatc tcttggtttt actaccgggc
      541 aagctaatag ttttagcata aaggcttcgg aagtaacaaa cctgaacgat gtcgatatta
      601 ttcttaaaga taaattgctg aacaaagaat tcaatctgct aagtggcgac acctatagct
      661 ttacttccga tgtggtaact actgatttgc gtttcgcagt attattcaaa acgaggtctg
      721 taaatacggc cttagagccg gtatcaaatg gagcaaaagt gtatgcaaga gctaacaaag
      781 gccggataac ctttatcaac ggaaatgagc caggtgtcat tattcctgtg gtaatttaca
      841 ataatgccgg tcagcaggta tcgaacttca atctgaatca atccaaaacc atgttggctg
      901 atcgctttgc acctggtgtt tatgtggtaa gttttaaatc aaaacaaggg ataagcacac
      961 agaaaattat tgttgactaa ccgattgagg aatttgataa acattaaaat taattcaatg
     1021 aaaacatact tatataatac tgaaaaacga gaatatatta ccccggtaat tttagtcgtt
     1081 ggtttggata atgaaatttc tctccaactg gaatctgctc ctccagttcc gggaaatgaa
     1141 ggaatatcgg cagtgcctga attctttgat caaaatccat ttaatgttga aaactgttgt
     1201 tgaatagtga gttttgaatg taactggctg aaaagcagac gtaaatagcg tgggtgataa
     1261 tacggaacca gtaggtgtaa tacataggtg cgacattttc aaaagctttt gcctccatta
     1321 tgcaactatc tgctcataat ttcaaacaat agaattttta ttacaagtta cttctttctg
     1381 gtttaaatac atttgcattg taagaatctc aaattattaa tttatttatt atgaaaaaaa
     1441 agttttcctt tatctttctc ttcggtctat caatggctct gcaacttgta gcccaaacac
     1501 ctaatgcatt taactatcag gctgtggctc gaagcatgac aggtacgata cttaaaagcc
     1561 aatcagttaa cgtgcggttt actttgcaca aaaccactgc cgaaggtaca accgttttcc
     1621 aggaaacgca aactgctgta actaccgata gtgggcttat cagcgttcaa attggtaccg
     1681 gaactccaac ttccgggtca tttggtttag gagaaattga ctggacaaca ggtgtttatt
     1741 ttatgcaggt tgaaattgac aatggcaccg gttataacac acttagcaca caacaactac
     1801 tcagtattcc ttatgctaaa tatgctcagg ctgccggaaa cgtgcgcatc aagtctccgg
     1861 atggctccac ttggaatgtt accattagta atacaggaag tatagcagca acaaaggttc
     1921 aataatcagg ataaaccatt tctatatgaa caaaataatt acatgtattg caattttact
     1981 gctgataacc ttacaaactt tttctcaaca attaatcggt acagccggtc agcaacaaaa
     2041 taatgtttcc tggagtattg gtgaaatagt aaatgcagaa ggctctgtgt ccggtctgtt
     2101 tttttcgcag ggactttata gctctgaaaa tttcatattt acagatgtcc ctcatgtcag
     2161 tctatccaca atctctgcat atccaaaccc agtgcttgat aaactgtatg taaagaattc
     2221 tgaaagtggc tattatactt gtacaataac agatattgta ggccgagtat ggataaataa
     2281 caaggttgac accgatcagg agattgattt gtcgcatttt gcatcaggtc aatacatcct
     2341 caaagtatct acaagccagt tttcaaaatc tacaattata ataaaaagat aaggccacca
     2401 atgaaaaaat tatatatcat tttaatatgt tctattttca ctttgcagct aatcgcccaa
     2461 agcccaaatg cattcaggta tcaggcagcc gtaaaagata ataatggagt tttagttata
     2521 ggtgcaagtg tgaagttccg cttcgaaatt tttaaaacag cattggaagc gaatggagga
     2581 accaaagttt attcagaagt tcaacaaaca actacacctt caactggatt agtgaacttg
     2641 ttaataggca aaggaactcc cgaaagcggt acattttcaa caatcgattg gagcgcaaac
     2701 tcctactata tcagagtgag cattgaccgt ggaagcggtt atgttttaat tggtgaacaa
     2761 caaatgctaa ccacttctta tgcacagttt gccgatgcta ccggaaatgt tgtgaaaacg
     2821 attcccgatg gaactgtatg gggaatggct gtagacaatt caggaaacct gacaacggtt
     2881 ccttttccta aaggttacac caaaatggtt tggaacgatg aatttaatgg ttccggatta
     2941 cccgatgatt ctaaatggga ttacgaacaa ggatacgttc gctcaagtga attacaatat
     3001 tatgccaaaa aacgtgtcga aaactcatat cagcaagatg gtttacttca tctggttgca
     3061 cgtcaggatt ctggtattat agatggagca atgcgaccta tgtcatctgc aagtattatc
     3121 accaaaggaa aagcagcatg gctttacgga tatgtcgaag taagggcaaa gatgccatat
     3181 ttagccggaa taggaacctg gccggcaata tggatgatgc ctaatgacga tttctatggt
     3241 ggttggccca gaagtgggga gattgataat atggagtatg ttgcttccga ttacaggtat
     3301 gtacactttt ctcaacactc gtataagtac aacaacattg atggtgcaaa tctccaaaaa
     3361 acaaccaaag catattgccc gactgcttat tctgaatttc acacatacgg actccaatgg
     3421 acaccggaaa ccatgatctg gtacctggat ggggttcaaa agtttaaagt aaataatgta
     3481 gaacaccttt ggagttcatg gccttttaat aaaccgtatt acctgttgct caacttggcc
     3541 atgggaggtt ggggtggcac aactaattat actttgctta aaaataatcc gcaggattac
     3601 caaattgatt atgttaggat tttccaataa ctaattataa aaatgtaata ttatgaaatc
     3661 aagacaatta cttattctct gtttttgggc agcaggtatt tttactgttt ttgccaacaa
     3721 aaccatttat gtggctcctg cagcttccgg aaccggaagt ggcatagatg cagccaatcc
     3781 ttgtactttc ccaactgctt taggaaattt ggatgctacg ggatatacaa cacttgtttt
     3841 accaaatgca actcttttcc aattatccgg aggaacaaat ggttatggta gaatccctgt
     3901 tgtagataac tctaaaatta taattgaagg caataattca atccttgaag gtaatggtgg
     3961 cgaaacacgc attctgagag ccagcacggg ttgtgttgtt gagcttaaaa acctgacctt
     4021 taggttaggt aatgctgctg caagcttagg gggagcaata ttttttggtg gggattcact
     4081 gaaaatagca ggttgcgtat tcgaaagcaa tactgctgac aatggtgctg ccattgggtc
     4141 aagaggtaaa tatataaaaa taacaaactc ctggtttaaa gataactacc ttagaagtag
     4201 ctttcagggt ggagcaatca gtcataccgg tacaacttcg ggaggaaaac tgattattga
     4261 aaatactaca tttagtaata ataatggtaa agctgctaat gccgcttacg gaacagccat
     4321 tattacagca tttgatggca atgtccgtaa ttacctgagc gaaatttcga tcactaattg
     4381 tacattctat aaaaataatt caggtttaaa cacgcatgta ggcgatgcag ctattcaact
     4441 cgattttctt ggtactacag cacccgtagg tacagcaacg acagccacat ttgtaaacaa
     4501 cacattttat ggcaatcaaa attgcgctat caatgtgaag ggaaaacaac aggccttaag
     4561 cttaataaat aatgcaattg ttggagattc gtgggcaaat gtttctacca cgggcgttca
     4621 ggatcacggc ataatctgtg aatattctgt cgcagaaggc cgacccgctt tagttgcaaa
     4681 aaacaattat atagttgcta aatttccaaa atccacaaag accgatgatg ctgctttggc
     4741 atcaggtaat gcagacaaca atattctgat aacaacggct tctcaaaatg atattgatgc
     4801 tttgggtttg tcaacctcac tctcgacaag tgggtcagtt gtaccttatt tatcagttag
     4861 tagtagttca agtccgttag tcgaaggtgg tgttaatgct gtcagcggta tagctatgtt
     4921 ttcaaccgac acccgggggg tggtacgcgc aagtggaaca accggttcaa aatatgatat
     4981 cggagcctat gaatttgaga atctgactac tgcggttcaa ggcgtttcaa ctgattcatt
     5041 tactttcaac cagtcaatcg gtgaagtgtc tgttataaat agcaataata gaatcctgac
     5101 ggttactgta tatctgccta acggacagtc tgtttatacc aaaacaacaa acggtactct
     5161 gacaattaat aaaactcaat tacctaaagg agtgctggta tgtatcgtaa atgatggtgg
     5221 aaaatctgtc gcaaaaaaaa taataaacta attattaata tataaaacta ttttatcatg
     5281 aagaaaaaaa taatactggg cctggcagcc ttatgggtta gctttaccgt gagcgcagtt
     5341 gacatttatg taaatccgac aactggtaac gatgccaata acggttcgca ggcagcacca
     5401 atgaaaacaa ttgagtcagc ggtatttgca gtaaaggaca atacacaaac aactattcat
     5461 atagccaaaa attcagtgtt cgtgctggga gccgttttaa acttaggtga gaacaaaaaa
     5521 ttagagattg ttggaccgaa tgtaactatt aaagcggcag agctggcagc tcagaaagat
     5581 ccgagtggat tgccactact tggtcagggg aaccgtatct taagagctgt tgctaattgc
     5641 gatttaaaga ttaagggtat aactttccag aatggtcgtc aggttggcta tattttgggt
     5701 ggtggtattt actttgcagg aaatacatta gaaattgata gttgtaaatt tattgataac
     5761 caggccggtt cagctggcgg agctgtaggt tgtagagcca aaagcgtcgt gattaaaaac
     5821 tcttatttcg aaggaaataa tattctgggt ggtggagcca gaggtgcagc tattatgcag
     5881 tgtggtcctg ctacaggaac tcccggaaca cttgtagttc agaattgtac tttttataaa
     5941 aatatgactc aggttggtgg ttccggaatg gtcattaata tcttcgactc tactgatagt
     6001 ggtgttggcg gtaaatatag caacatgggt agtatacagg ttaccggttg tacattttta
     6061 gaaaatactt ctccaacagc ttatcaggca gcaattgatg taagtgatag cgattgtggt
     6121 gtggttttag taaataacac attttataac aattcagatg gtgcattccg gttactactt
     6181 agcaaagcat atttggctaa caatgtaata gttggtggta aacaaggtat cttatctgaa
     6241 gcaaaagtgg ctgatggacg tcctgaaatg gtagctgtca ataatattgt aattggtact
     6301 gaaggtggta ttaatggtgg tattgatgat gcttgtttca caactgctgc ttccgcaaat
     6361 agcaatgttg ttagtaaaat tgcatcgtat ccggttgcag ctctaggatt ggctacttca
     6421 ttatctacag ataattttgt tccgtactta aaaattacgt cagcaacaag tactttgata
     6481 gatgcaggga ttgacaatac tcttgcaaaa tttggaacaa attatgttct gactaatgat
     6541 gtgattggtc gttcaacgaa caataagaaa gacattgggg cttatgaata taatggtatt
     6601 acaggttttt cattgccaga gtatgttaat gaaaactata gaatatctca atctgaaaat
     6661 acaatcactg tgaaaaatat ttcagataaa tcgttctcga tgagtgttgt aaatatgaca
     6721 gggaaagtgg tttattctac tcaggttacc agctctgttg aattatctaa gaacaagttt
     6781 ggaaaagggg tatttatcct tttgttcaat gatggaacta aatcaggttc taaaaaagta
     6841 atattctaat gtagctatca ctacagctcg cgggcaggaa agttttcatt tctatcaaac
     6901 tgaaaatatt cctgcctgtt ttttttaaac cgattacttc taatactgtt attttatgaa
     6961 aaaattatta ctaagcataa ctgcattgtt cgcaactctt tcacttagtg cggtagatat
     7021 ttatgtatcg ccagccaaag ggaatgatgc caataacgga acaatggcag ctccaatgaa
     7081 aacaatagaa tctgcagtgt ttgcagtaaa agacaatacc caaaccacca ttcatattga
     7141 aagcaatgcc acggttgttt tgggagctaa attaaacttt ggacaaaaca aaaaagtaga
     7201 gattgttggt agaaatgtaa caattaaagc ttctctgctg gcagctcaaa aagatccgag
     7261 tggat
//
LOCUS       DATDNM010000336         4296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1537142, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000336 DATDNM010000000
VERSION     DATDNM010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4296
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1537142"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..591
                     /gene="uppS"
                     /locus_tag="VI413_05600"
     CDS             <1..591
                     /gene="uppS"
                     /locus_tag="VI413_05600"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008997927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HEY6914132.1"
                     /translation="VRETTEAAAEIGIKYLTLYAFSTENWNRPQQEVDALMELLINTI
                     EKETPTLNKNNIRLMAIGDLSRLPGSAAEKLQRCINTTCKNTGLALVLALSYSSRWEI
                     TNATKNICKEVLAGKVKIEDINDELISNHLTTKSIPDPDLMIRTSGEERISNFLLWQI
                     AYSELYFTEIHWPAFRKEDLYQAIYEFQQRERRFGK"
     gene            633..3257
                     /gene="bamA"
                     /locus_tag="VI413_05605"
     CDS             633..3257
                     /gene="bamA"
                     /locus_tag="VI413_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEY6914133.1"
                     /translation="MQYKTLFSISLLFIFSQLIVAQTTTEKDSTELPVIEYSNSTPKY
                     EIAEIKVTGASNYEDFVLIGFSGLAVGDVINVPGDAITNAVKRFWKQGLFSDVKILAT
                     KISGGKIWLTIALKERPRVSEINYNGLKKSEIEDLELKIGIVKGNQITPNISDRAKKV
                     IEKFMSEKGFLNVAVNVYQRNDPNKAGHVIVDVNVDKKLKTKIHQLTYIGNVALNHNK
                     INKAMKKTNDNNWRNFFRTKKFVKEEYEKDKIALIEKYNEIGYRDAYIVSDSVVKFDD
                     KSVNVYITIDEGKKYYYRNIKWVGNTIYPYEYLNNVLGIKKGDVYNHKLLMEKLETDE
                     NEAVSKLYKDRGYLFFQIDPVEVQVTNDSIDFEMRIFEGKPATINEIGIKGNSRVYEH
                     VVRRELRTKPGQLYSQEAIMRSLRELAQMGHFDQEKLRPDIQPDPENGTVDVTYELET
                     KGSDQVEFSAGWGSTGVVGSIGLKFSNFAIQNLFRPETYRIVPQGEGQTFTLNGRTNG
                     QSYSSFSLSFLEPWLGGKRPNSLSASVYYSTQSAISSRYSNNLQNMYSNYYNSGYGYN
                     SYGGYGSGYDNSSLYQNEIDPERYMRTIGASLGYGKRLNWPDDYFVFQGELSYQLFML
                     NNWYPGYFPMTAGTFNNLSLNLTLSRSSIDNPIYTRTGSAFSLGLKVTPPYSSLNGKN
                     YEGSLTTQERYKWIEYHKWSFSGKTFTPLTPDNKLVIMGRALFSYLGHYNINAQSPFE
                     AFNMGGDGMSSYTSYGTDYIAMRGYTSGSLTPYNAQTGTSMGYLYNKFTMEVRYPLSL
                     EQSATIYALTFLEAGNCFSSIKGYNPFNLKRSAGVGVRIFLPMFGMMGIDWGYGFDKD
                     NTGARSGSQFHFVLGQEL"
     gene            3402..3917
                     /locus_tag="VI413_05610"
     CDS             3402..3917
                     /locus_tag="VI413_05610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005637338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HEY6914134.1"
                     /translation="MKKLIISLCLLAGIAFAGNAQKFAMVDMEYIMKNIPSYETANDQ
                     LNQISKKWQSEVDAQMQEVQKMYKNYQTELVFLSEDMKVKREEEIVAKEKAVQELKRN
                     YFGPEGELYKKRQSLMKPIQDEVYTAIQDISKEKDLELVFDKSSSMSVIFTSPKLDIS
                     DAVLQKLGYSK"
     gene            3976..>4296
                     /locus_tag="VI413_05615"
     CDS             3976..>4296
                     /locus_tag="VI413_05615"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HEY6914135.1"
                     /translation="MFKKIALVLLCALPFSLMAQDVKLGHVNSQEILTLMPDRANIEK
                     TINDLQTQWEGELVKMREEYNTKIKEYQEKQATMPESIKQARQSEIAEIEQRITTFQQ
                     TAYTD"
BASE COUNT         1521 a          792 c          830 g         1153 t
ORIGIN      
        1 gttcgcgaaa ctactgaagc cgctgccgaa atagggatta aatacctgac tttatacgct
       61 ttttccaccg aaaactggaa caggccgcaa caggaagtgg atgcattgat ggaattgctt
      121 atcaatacca ttgagaaaga aactcctact ttaaataaaa acaatatccg gttaatggca
      181 attggcgact tgagccgctt gcccggaagc gcagcagaaa aacttcaacg ctgcattaat
      241 acaacctgca aaaatacagg gttagctttg gttttggcat taagctactc atccaggtgg
      301 gaaattacca atgctacaaa aaacatttgt aaagaagtct tagccggaaa agtcaagatt
      361 gaagacatca atgatgaact tataagcaac catttaacaa caaaatcaat cccggacccg
      421 gatttaatga ttcgcaccag tggagaagag cgcataagta attttctgct ctggcagatt
      481 gcttatagcg aattatattt cactgaaata cactggccgg ctttcagaaa agaagattta
      541 tatcaggcaa tttacgaatt tcaacaacga gaacgtcgtt ttggcaaata atcagaccaa
      601 ttccgtttca tcaagatact ccaaaataaa ttatgcaata caaaacgctt ttctcaattt
      661 ctttgctatt cattttcagc caacttattg ttgctcaaac taccacagaa aaagattcga
      721 ccgaattacc ggttatagaa tattccaact cgacaccaaa atatgagata gccgaaatta
      781 aagttaccgg agcaagcaac tacgaagact ttgtattgat tggtttctcc ggtcttgctg
      841 ttggcgacgt tatcaatgtt ccgggagacg cgatcactaa tgcagtgaaa cgcttttgga
      901 aacagggcct tttctctgat gtgaagattc ttgcgacaaa aataagtggc gggaaaattt
      961 ggttaacaat tgcattaaaa gaacgcccac gagtttccga aatcaactac aacggactaa
     1021 agaaatctga aattgaggac cttgaattaa aaattggcat cgttaaagga aatcaaatta
     1081 ctccaaacat ttccgacaga gcgaaaaagg ttatcgaaaa atttatgagc gaaaaaggct
     1141 tcctgaatgt agccgtaaat gtttaccaac gcaacgatcc gaataaagcc ggccatgtga
     1201 tagttgatgt taacgtggac aaaaaactca aaaccaaaat tcatcagctc acttacattg
     1261 gcaatgtggc gctaaaccac aacaagataa acaaagcgat gaaaaaaacc aatgataata
     1321 attggcgtaa ctttttccga accaaaaaat ttgtcaaaga agagtacgaa aaagataaaa
     1381 ttgccctgat tgagaaatac aatgaaattg gttatcgtga tgcttatatc gtctccgaca
     1441 gcgttgtaaa gttcgatgat aaaagtgtaa atgtatatat cacaattgat gaaggtaaga
     1501 aatattatta ccgtaatatt aaatgggtag gaaacaccat ttatccatat gagtacttga
     1561 ataacgtgct tggaataaaa aaaggagatg tttacaacca taaactcttg atggagaaac
     1621 ttgaaaccga cgagaatgaa gctgtaagta aactttacaa ggatagagga tatttattct
     1681 ttcaaatcga tcccgttgaa gtccaggtta caaacgattc tatagatttc gaaatgcgta
     1741 tatttgaagg aaaacctgct accataaatg agattggcat caaaggaaac tcacgtgttt
     1801 atgaacatgt ggttcgtcgt gagctacgca ccaagccagg gcagttgtac agccaggaag
     1861 ctattatgcg ttcattacgc gagttggctc aaatgggtca cttcgatcag gaaaaattgc
     1921 gtccggacat tcaaccagat cctgaaaatg ggactgtaga tgttacatac gaacttgaaa
     1981 caaaaggaag cgaccaggtt gaattttcag ctggctgggg ttctacaggg gttgtaggta
     2041 gtatcggatt gaagtttagc aactttgcca tacagaactt attcagaccc gaaacctacc
     2101 gcattgttcc tcaaggcgaa ggtcagactt tcacgttgaa cggaagaaca aacggacaat
     2161 catattcttc tttcagctta tcatttttgg aaccatggtt aggcggaaaa cgtcctaatt
     2221 ctctttcggc ttcagtttat tattctactc aatctgccat tagttcgcgc tattccaata
     2281 atttacaaaa tatgtatagc aattattata atagtggata cggttataat agctatggtg
     2341 gatatggaag tggatatgac aacagtagtt tgtatcaaaa tgaaattgac cctgaaagat
     2401 atatgcgtac aatcggagcc tcattgggtt atggcaagcg cctaaactgg cctgatgatt
     2461 atttcgtttt tcaaggtgaa ttgtcttacc agctatttat gctgaacaac tggtatccgg
     2521 gttatttccc aatgacagca ggaacattca acaacctgag tttgaatctg accttgagcc
     2581 gtagctctat cgacaaccct atttacacgc gtactggttc agctttctcg ctaggattaa
     2641 aagtaacacc tccatactca tcgcttaatg gcaagaatta cgaaggaagt ttgacaacac
     2701 aagaacgcta taaatggata gagtatcata aatggtcgtt cagcggaaaa acgtttaccc
     2761 ctctaacacc agacaataaa cttgtaataa tgggaagagc tttattctcc tatttagggc
     2821 actataatat aaatgcacaa tctcccttcg aagcattcaa tatgggtggt gatggaatgt
     2881 ccagctacac aagctatggt acagattata ttgccatgcg tggttataca agcggctcgc
     2941 ttaccccata caatgcgcag actggtacaa gcatgggcta tttatacaac aagtttacca
     3001 tggaggtacg ctacccatta tcattagaac aatcagccac gatttatgct ctgacatttc
     3061 ttgaagccgg taactgcttt agctcaatca aaggatataa tcctttcaat ttgaaacgat
     3121 cagcaggtgt aggggttcgt atcttccttc caatgttcgg aatgatgggg attgactggg
     3181 gatatggttt tgacaaagat aacacaggcg ccagaagcgg tagccagttc cactttgtgt
     3241 tagggcaaga attgtaaaac aaatttagat catgattttc agctataaaa ctgaaattat
     3301 aaactttaag catatggcaa aatagtccga aaactttggc aaagaatttg taatggctaa
     3361 atcagtaaaa aataacgtat aaccatttaa tgaaaataaa tatgaaaaaa ctaattattt
     3421 ccctctgttt attagctgga atagcatttg ctggaaatgc ccaaaaattt gcaatggtag
     3481 atatggagta tatcatgaag aatattcctt catacgaaac agcaaatgat cagttgaacc
     3541 agatatcaaa aaaatggcaa tcggaagtag atgctcaaat gcaggaagtg caaaaaatgt
     3601 acaaaaacta ccaaaccgaa ttggtttttc tttctgaaga catgaaagtg aaacgcgaag
     3661 aagaaattgt tgccaaagaa aaagctgttc aggaactaaa acgaaactat tttggacctg
     3721 aaggagagtt gtataaaaaa cgtcaaagtc ttatgaaacc aattcaagac gaagtttata
     3781 cagctattca agatatttca aaagaaaaag acctggaact ggttttcgat aaaagctctt
     3841 caatgagcgt tattttcact tcgcctaaat tagacatcag cgatgctgta cttcaaaaat
     3901 tgggttattc aaaataattt tttaaatttg caatccgcta caaaaaaaaa taacaaaaac
     3961 ttaaaataaa aaaacatgtt caaaaaaatt gctctggtac tgctttgtgc actgcctttc
     4021 tcactaatgg ctcaagacgt taaattaggc cacgtaaatt ctcaggaaat tctgacactc
     4081 atgccggatc gcgcaaacat tgaaaaaaca atcaatgact tgcaaactca atgggaaggt
     4141 gaattggtaa aaatgcgtga agaatacaat acgaaaatca aagagtatca ggaaaaacaa
     4201 gctacaatgc ctgaaagtat taaacaagct cgtcaaagcg aaattgctga aatagagcaa
     4261 cgtataacaa ctttccaaca aacagcttat actgac
//
LOCUS       DATDNM010000337         3701 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1324579, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000337 DATDNM010000000
VERSION     DATDNM010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3701
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1324579"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(286..1245)
                     /locus_tag="VI413_05620"
     CDS             complement(286..1245)
                     /locus_tag="VI413_05620"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914136.1"
                     /translation="MKTIVVLFTLTGCMVLSIISFGQQHFTDNINYTLTFDESTGLQH
                     LWTDTISNPHNIWQVGKPQKTIFTAPYSLPNAIITDIVNPYPPNNSSVFVIKNVIGGV
                     ISNLTLKGKYYANTDSLRDYGRIELSLNRGLTWLDLLKDSELTDTINGQIIHLFLSYY
                     NNEKPILTGNSGGWTNFLIHLGFPGDFYATQGDTVLYRFTFISDNIQNNKDGLMFDDL
                     VFYESVEGINKLGYDPIKSDCFPNPALDQLTISFENNQRSTFELKLFDIKGKLIKLQK
                     VNSNQVILPVQSLQKGMYFYKLADRKNRKFSTGKFIVGVREVY"
     gene            complement(1346..2263)
                     /locus_tag="VI413_05625"
     CDS             complement(1346..2263)
                     /locus_tag="VI413_05625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914137.1"
                     /translation="MKKITILTFFIALILQLFGQNNSMLGVSDQWNIGYHCVNEGPMH
                     PYDKWTTSFLHIEGDTLMNGKHYKKIMNCVDSLCEAKSLRSYIREDAGQVFLANKTEE
                     LIQYDFNLQQGDTMIMDFLIDVNRDIRLYIRVDSVKSMVLRDQKERIVQYVTVFNYYK
                     SQLRDQFINDVFIEGIGSLKFGLIYPILFITGDQFCDPALLCFSTGEDIIYSNPEFNS
                     CYLSTGLRQLQQPELVQVFSINNGMLEIQLTEAKSGKLFVFDLNGRKILEQTVYRSWS
                     QFCLSSFGFYLYRFVSDEGKVQTGKFVMK"
     gene            complement(2272..>3701)
                     /locus_tag="VI413_05630"
     CDS             complement(2272..>3701)
                     /locus_tag="VI413_05630"
                     /inference="COORDINATES: protein motif:HMM:NF013779.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C10 family peptidase"
                     /protein_id="HEY6914138.1"
                     /translation="LLCILSEQVFSEKVSKEKAQRIAENWGAMKMNRSKDDIDTDKKL
                     HFVSNADTSLYVFNFKNGGFVIVPADDHTNPILGYATDNQIDMDNIKPDLRDWLRYYA
                     DMVRFNKKEKLDQKIKDKWLEMEEGITLKSIQMTVPSLFETTNSSRWAGWRPYFNQAP
                     QAQPQFAPGTNACVPGSIAEIMKYFKYPLIGTGVGSGHNNNTLFTRNINCFFNYDLMP
                     FRLTYCGNGTNNCNDGSFDIIPGVTQAQIDEVGKIQYTAGLAVGMYWIGLGDTSAIIT
                     TTGTFGFTNDWVTEMADHFYYTPPTSSDYWSSTEISASTSNFKSGLRNSLNIGYPVLF
                     RYDTKSSGSGHVVVIDGYENDEYFHFSMGEGGASDAYYYLFTSDNDGVHLPRPHISLW
                     GLNACLNIHPNCPPSQNVSVTNKIVASDSGELFQSGNDLLMDHVTIQSGGKAVLRADH
                     AIIISSDFEVALGGEILMICKPCTF"
BASE COUNT         1183 a          717 c          612 g         1189 t
ORIGIN      
        1 aaaaggaaaa catgatgaat gtaggtgagc tggacaagaa attctttgca gaaacaaagc
       61 ctgttaaaaa acgcaacaag ccaagacgca ggccacaggg aaataaacca caggtgaatg
      121 taaagcctaa ggcgtaacaa ctgttatttc tttatttatt tccttctcaa gaaaaataaa
      181 aaacccatac agtttaactg tatgggtttt ttattcagat aaaattaaga ttattcaatt
      241 gagtccaatc ataaattcgt acaacatgtt gagctaatct ttactttaat atacttccct
      301 gacaccgaca ataaacttcc ccgttgaaaa tttcctgttt ttacgatcag cgagtttata
      361 aaaatacatc cctttttgaa gggattgaac aggcaaaatc acctggtttg agttgacttt
      421 ctgcagtttg atcaattttc ccttgatatc aaaaagcttt agttcaaatg ttgaacgttg
      481 attattttca aacgagatgg tcaattgatc cagagcagga ttgggaaaac agtcgctctt
      541 aatggggtca taaccaagtt tattgatacc ttctactgat tcataaaaaa ccaggtcatc
      601 aaacattaat ccatccttgt tgttctggat attgtcactt ataaaagtaa accggtagag
      661 tacagtatct ccttgagttg cataaaaatc ccctggaaat cctaaatgaa ttaaaaagtt
      721 cgtccatccg ccagaattcc cggttaaaat aggtttttcg ttattataat aactcaaaaa
      781 taaatgtata atctgaccat taattgtatc cgttaattca gaatccttta atagatccaa
      841 ccaagtcaag ccacgattca atgacaactc aattctgcca taatcacgca atgaatctgt
      901 atttgcatag tatttacctt ttaatgtcag attgctaatt acgccgccta tcacattctt
      961 tatcacaaag acagatgaat tattgggagg ataaggattc acaatatccg ttattatggc
     1021 gtttggcaga gagtatggtg cggtaaaaat agttttctgg ggttttccta cttgccagat
     1081 attgtgcgga ttggaaatag tatcggtcca caaatgctga agacctgtac tttcgtcaaa
     1141 cgttaaggta tagttaatat tgtccgtaaa gtgctgctgt ccaaatgaga taatggacaa
     1201 taccatgcat ccagtaagcg taaataaaac tacaatcgtt ttcatgctat tttctttatt
     1261 acggctgagg gttactttta gcgctgtccg tttaggttta ttaaaaggat tccatctctc
     1321 aaaagatatg gaatcctttt cttttttatt tcatgacaaa cttcccggtt tgaactttac
     1381 cttcatcgga tacaaagcga taaaggtaaa aaccaaatga agagaggcag aactggctcc
     1441 aggaacgata gactgtttgc tccaaaattt tcctgccatt gagatcaaat acaaataatt
     1501 taccactttt ggcttcagtg agctgtattt ccagcattcc attgttgatg ctgaaaacct
     1561 gaaccagttc cggctgttgc aattggcgta aaccggtact taaataacaa ctattaaatt
     1621 ccggattaga atatataata tcttcgcccg tagaaaaaca aagcaacgcg ggatcacaaa
     1681 actgatcccc ggtaataaat aatattgggt agattaaacc aaatttaaga gagccaattc
     1741 cttcaataaa aacatcattg atgaattgat cgcgtagttg acttttgtaa taattaaata
     1801 cagtgacata ttggacaatg cgctcttttt gatctcgcaa caccattgat tttacggaat
     1861 caactctgat ataaagcctt atatctctgt taacatctat taaaaaatcc ataatcatgg
     1921 tatcgccctg ctgtagattg aaatcgtatt ggatcaattc ttccgtttta ttcgccaaaa
     1981 atacctgacc tgcatcttca cgaatgtaag atctcaagct tttggcttca cacagcgaat
     2041 caacacaatt cattattttt ttatagtgct ttccattcat cagtgtatcg ccttcaatat
     2101 gaagaaaaga ggtggtccat ttatcgtatg gatgcattgg tccttcattc acacaatgat
     2161 atccaatgtt ccattggtcg gaaacaccaa gcatagaatt attctgccca aataactgaa
     2221 gtataagagc aataaaaaaa gttaaaattg ttattttttt catctttcaa tttaaaaagt
     2281 acaaggttta caaatcatta gtatttcacc tccaagcgcc acttcaaaat cgcttgagat
     2341 gataatagca tgatcggctc gaaggacggc ttttcctcct gattgaatag ttacatgatc
     2401 catcaataag tcatttccgg attgaaaaag ctcgccgcta tcacttgcca ctattttatt
     2461 tgtaactgat acattttggc tgggtgggca atttggatgt atgttcaaac atgcatttag
     2521 tccccataaa ctaatatgtg gtcttggcaa atgtacacca tcattatcac tggtaaataa
     2581 ataataataa gcatccgagg cccctccctc gcccatcgag aaatgaaaat attcatcatt
     2641 ctcataacca tcaattacaa ccacatggcc actgcctgag ctttttgtat catatctaaa
     2701 aagtactggg taaccaatgt ttaaactatt tctgaggcca cttttaaaat ttgacgtact
     2761 ggctgaaatt tcagttgagc tccaataatc agaactggtt gggggagtgt aataaaaatg
     2821 atcggccatt tcagtaaccc agtcatttgt aaatccaaat gttcctgtgg ttgtgattat
     2881 ggctgaagta tctcccaatc ctatccaata cataccaacc gctaatcctg ccgtatattg
     2941 aattttacca acttcatcaa tttgagcttg tgtgactccg gggataatgt cgaaagaacc
     3001 atcattacaa ttatttgtac catttccaca atatgtcaac ctaaatggca ttagatcgta
     3061 attaaagaaa caattaatat tccgggtgaa taaagtatta ttattatgac cacttcctac
     3121 acctgttcca atcaaaggat atttgaaata tttcattatt tctgcaattg aacctggaac
     3181 acaagcatta gtgccgggag cgaattgagg ttgtgcttgt ggcgcctggt tgaagtatgg
     3241 tctccagcca gcccacctgg aagaattagt agtttcgaat agtgaaggaa ctgtcatttg
     3301 aatacttttt aaagtgatac cttcttccat ttcaagccat ttatccttaa tcttttgatc
     3361 taatttttct tttttattaa accttaccat atctgcgtaa taccttaacc aatcacgaag
     3421 atcaggttta atattatcca tgtcaatttg attatcagtc gcgtagccta gaattgggtt
     3481 tgtgtgatcg tcagcaggta caattacaaa ccctccgttt ttaaaattga acacatataa
     3541 gcttgtatca gcattgctta caaaatgaag tttcttatct gtatctatat catcttttga
     3601 tcggttcatt ttcatagcac cccagttctc agctattctt tgcgcttttt ctttcgatac
     3661 tttttcagaa aatacctgtt ccgataaaat acataacagc a
//
LOCUS       DATDNM010000338         3695 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_150112, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000338 DATDNM010000000
VERSION     DATDNM010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150112"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..3386
                     /locus_tag="VI413_05635"
     CDS             240..3386
                     /locus_tag="VI413_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006799189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6914139.1"
                     /translation="MKKNIFFTLIFLSLFSANQISAQLSNGAPIPTEIENPELLGINK
                     EPYHATLMPYGNLQEALVAKRHASSLCQSLNGTWKFNWVPSPEKRPADFYKSDYDVSG
                     WNDIKVPSNWEVQGYGTPFYRNLGYTIKKDFPHVMSEPDKWYTSYNERNPVGSYRREF
                     SVPAEWVGRRNFITFDGVDCAFFLWVNGEKVGFSVNSRNAADFDLTKYLRPGKNMIAV
                     EVYQYSSGTWLEDQDMWRLHGIFRNVTLWSAPQVHIRDFFVKTDLDKDYKDATLDVTA
                     KIKNYANKTAKAQTFTATLYDKEGHEIAKGSATGTALKPNQEEPLNVKIQVTNPLKWT
                     AETPNLYTVVLTNSEGEILSKKIGFRKIEIKGRVFMVNGVPIKLKGVNRHEHWSDVGH
                     AITEAQMIRDLEVIKQGNCNHVRTSHYSDDPRWYELCDEYGIWLVAEANCECHGYDRR
                     FDEEPTMKAAIIDRNVANVENFKNSPSVIIWSLGNECGGVGSNFVAAMNTVKSIDPTR
                     FVHYERFGTGKNNPADLDGRMYGTAEDYANTAKDKGLTKPFYICEFVHAMFNSMGSLD
                     EYSKAFDNNPEILGGAIWEFQDQALWNKRDPKHPILAYGGGFGEAPNDHYFIHKGVIS
                     YDRATEGKNVKAHYPEMKKAFQWIDTELTDAINGGIQIKNKYQFISLDGFDATWTLTE
                     NGQEIDNGIIKMRPTWGKGTFTANIPYKIEQPKAGAVYYLRVSYRLKEKTLWADKDFE
                     VATEQFKLPVNTPLLVEPKVNQLVKLVQNPQSAIISGKDFSVCFDKKTGFLSQLTKNG
                     VNLLVADGAPKLHLWRASHRNDDDWAYQQWQKFGVNALQYSLVDFKVEVVDNASVKVT
                     STTKADGKEGFGVYHTATYLVKGDGTIKVDNQVQFVGFRINLARIGVRMLLDKKLDRM
                     TFLGRGPFENYSDRKSAAEVGVYELGVNEQYEYEKPMERGNHEEVSWVKLSGKDMPSL
                     MVKADEKLMQVAALPHTDEQMYPVEYKIDLPASTSTVFCISTKTLGVGSASCGPRPLA
                     RYQVFAEPTSFTYTISLF"
     gene            3471..>3695
                     /locus_tag="VI413_05640"
     CDS             3471..>3695
                     /locus_tag="VI413_05640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NPCBM/NEW2 domain-containing protein"
                     /protein_id="HEY6914140.1"
                     /translation="MKRLNNFRFTATIGFFVLFSFLGFSSLSAQTIWLDQLDLSTATQ
                     GYGVPMKNKSIDGKPLTIAGKTFERGFGSHS"
BASE COUNT         1162 a          682 c          815 g         1036 t
ORIGIN      
        1 tttttatggt ttataattag cttgatatga taaagtatac tgactgtagt attaacgttt
       61 attttaaatg aatcaaatac gagtcaggta atacaatgac gaattactta atactatctc
      121 ttttttgttt ataatgagtt atttatctca atgatattca tatcgaaaac gaaattaatt
      181 gtttacagaa gggtaacata tttcgtttaa ataaaaatgt aatctggaat tatacatcaa
      241 tgaaaaaaaa cattttcttt actttaatct ttctttctct attttctgcg aaccaaatta
      301 gcgcccaact ttcaaatgga gctccaattc caacggaaat tgaaaacccc gaattactgg
      361 gcataaacaa agagccttac cacgccacat taatgcctta tggaaattta caggaggctt
      421 tggtggcgaa acgacatgct tcatcgcttt gtcaaagtct taacgggacc tggaaattca
      481 attgggttcc aagcccggaa aaacgccccg ccgattttta taagtctgat tacgatgttt
      541 cgggttggaa tgacattaaa gttccttcca actgggaagt ccagggttac ggtacgcctt
      601 tttatcgcaa tttgggttac accatcaaga aagattttcc acatgtaatg agcgagcccg
      661 acaagtggta cacatcctac aatgaacgaa atcctgtagg aagttatcgc agggagtttt
      721 ctgttccggc cgaatgggtc ggtcgtcgta attttattac gtttgatggt gtcgactgtg
      781 ctttcttttt gtgggtaaat ggcgaaaaag tgggttttag tgtgaacagc cgcaatgctg
      841 ccgattttga ccttacaaaa tacctgagac cagggaaaaa tatgatagcc gtagaggtct
      901 atcaatacag ttcgggtacc tggttggaag atcaggatat gtggcgtttg cacggaattt
      961 tccgcaacgt gacactttgg agtgctccac aagtgcatat tcgtgacttt tttgtgaaaa
     1021 cggatttgga caaagactac aaagatgcca cactggatgt aacggcaaaa ataaaaaact
     1081 atgctaataa aactgccaaa gcacaaacat tcacagctac actttacgac aaagaagggc
     1141 atgaaatagc caaaggtagt gcaaccggca ccgcactcaa gcccaatcag gaagagccat
     1201 tgaacgtaaa aattcaggtg actaacccgc tgaaatggac tgctgaaacg cctaatctgt
     1261 acacagttgt gttgacaaat tctgaaggcg aaatattatc taaaaaaata ggtttccgaa
     1321 aaatagaaat caaaggacgt gtgtttatgg taaacggtgt tccaatcaaa ctgaaaggcg
     1381 tcaaccgtca cgaacactgg tcggacgtag gtcatgccat caccgaagcg caaatgattc
     1441 gcgatttgga agtcattaaa cagggaaatt gtaaccatgt gcgtacaagc cattattccg
     1501 atgatccccg ttggtacgaa ttgtgcgacg aatatggtat ttggttggtt gccgaagcaa
     1561 attgtgagtg ccacgggtat gacagacgtt ttgatgaaga accaaccatg aaagcagcta
     1621 tcattgatag gaatgtggct aatgtagaga attttaagaa tagtccttcg gtgattattt
     1681 ggtcactcgg aaacgaatgt ggcggtgtag ggtcgaattt cgttgcagca atgaacaccg
     1741 ttaagtctat tgacccaacc cgttttgttc attatgaacg ttttggaaca ggaaaaaata
     1801 acccggccga tttagatggc aggatgtatg gcacagccga agattatgct aacacggcca
     1861 aagataaggg attgacaaaa ccattttaca tctgcgaatt tgttcacgcc atgttcaact
     1921 caatgggttc actcgacgaa tactcaaagg ctttcgacaa taatccggaa attttaggcg
     1981 gtgctatttg ggaatttcag gatcaggcat tgtggaacaa gcgtgaccca aaacacccca
     2041 ttttggctta tggaggtggt tttggcgaag caccgaatga ccattatttc attcataaag
     2101 gagtgatttc ttacgaccgt gcaacagaag gaaagaatgt aaaagcacat tatccggaaa
     2161 tgaaaaaagc atttcaatgg attgataccg aactcaccga tgcgattaac ggaggtattc
     2221 aaattaaaaa taagtaccag tttatttccc tggatggttt tgatgccacc tggactttga
     2281 ccgagaacgg acaagaaatt gataacggaa taattaaaat gcgtcccaca tgggggaaag
     2341 gaacttttac agccaatatt ccgtataaaa tagagcaacc aaaagcagga gcagtctatt
     2401 atctgcgcgt ttcttacagg ctaaaagaaa aaacactttg ggctgataaa gattttgaag
     2461 tggcaaccga gcagtttaaa cttcctgtca atacacctct actggtagaa ccaaaagtca
     2521 accaattggt gaaactggtt caaaatcctc aatctgcaat tatttcaggg aaagattttt
     2581 ctgtctgctt tgataagaaa accggctttc tgagtcaact gacaaagaac ggcgtaaatc
     2641 tgttagttgc ggatggagcg ccaaaattgc atttgtggcg tgcctctcat cggaatgacg
     2701 acgactgggc ttatcaacaa tggcaaaaat ttggtgtaaa tgcacttcaa tattcgttgg
     2761 ttgattttaa agtggaagtg gtggacaatg cttccgtgaa agtaacttct accaccaaag
     2821 cagatggcaa agaaggtttt ggagtttatc atactgctac ttatctggtg aaaggggatg
     2881 gaacaataaa ggttgataat caggttcaat ttgtaggttt ccgaatcaac ctggctcgca
     2941 ttggtgtacg aatgttgctc gacaaaaagc ttgatcgtat gacgttttta ggtcgtggcc
     3001 cgtttgaaaa ttattccgat cgcaagagtg ctgccgaagt gggtgtatac gaattgggag
     3061 ttaacgaaca atatgaatac gaaaaaccga tggaacgtgg taatcacgaa gaagttagtt
     3121 gggtaaaact aagtggcaaa gatatgcctt cgctgatggt gaaagcggat gaaaaactga
     3181 tgcaggtggc cgctctgcct cataccgatg agcaaatgta tccggtggaa tataaaattg
     3241 acttgcctgc cagtacttca acggtgttct gtatttcaac caaaacgctg ggtgttgggt
     3301 ctgcaagttg tggtccaaga ccacttgcca ggtatcaggt ttttgctgag cctacatcat
     3361 ttacctacac aattagcttg ttttgattta tcccggacta ccacctggca gataggtggt
     3421 agtctgttga ttatcatata aatttggaaa ttatcaaaaa tacaatatta atgaaaagat
     3481 taaacaactt tagatttaca gccactattg gtttctttgt cttatttagt tttttgggat
     3541 tcagtagctt atctgctcaa accatttggc tcgatcaatt ggatttaagt actgcaacac
     3601 aaggctatgg tgtacccatg aaaaacaaat caattgatgg taaacccctt actatagcag
     3661 gaaaaacatt cgaacgtggt tttggaagcc attcc
//
LOCUS       DATDNM010000339         5822 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1325165, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000339 DATDNM010000000
VERSION     DATDNM010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5822
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1325165"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..776
                     /locus_tag="VI413_05645"
     CDS             <1..776
                     /locus_tag="VI413_05645"
                     /inference="COORDINATES: protein motif:HMM:NF024973.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="BatD family protein"
                     /protein_id="HEY6914141.1"
                     /translation="KVTNNFKTTSSGVTGSKIIEYMFIPRHSGNFEIPATQFSYFDTQ
                     DKKYKVLTTPVYKLQVAKGEGGESSTVVSNYIDKEDVKQLAKDIRYITTNKFVIEKEE
                     EPLFGALICWLMYLIPLFISLVLFVFFRKQIIENANVSLVKNKKANKVAQKRLKYAQK
                     LLKEGNKDKFYEEVLKAVWTYLSDKLSIPVATLTKDRVESELTNHNVDLTVINKFIQI
                     LNTCEFARYAPNSGQQEMGNLYDETMEAISNLEELYKKF"
     gene            798..1550
                     /locus_tag="VI413_05650"
     CDS             798..1550
                     /locus_tag="VI413_05650"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6914142.1"
                     /translation="MKRIILFLSLILCFGSVMFSQSATVKQANDLYAKGNYTEAAKLY
                     EKVLATEGVAPELYYNLGNAYYKAAETGKSILNYERAIRLSPTFEDAHVNLELAQLKV
                     VDNIVQTPTFFLGRWIDNLIKLLTSNQWIVISFSVFIGGLILAFLFIFAPSLFIRKMS
                     FYVGSTLLVISLCTLIFSGVRKDQLVNHREAIVMTGAVTVKSSPDKSGTDLFQLHEGT
                     KVVVKSTLGRWTEIILGNGNIGWVEQENIENI"
     gene            1564..2214
                     /locus_tag="VI413_05655"
     CDS             1564..2214
                     /locus_tag="VI413_05655"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY6914143.1"
                     /translation="MNLISTLNTYDTNLFLFLNGLHTSFFDGFMYAFSARLTWIPLYI
                     AVLYIVIKQWKKDAIWIAISFVACVLIADQISSSVIKVIVQRPRPSHAIELQGLVHLV
                     NNSRGGKFGFVSSHAANTIGFALLSSLLFKSRFYAVIIFSWAILTAYSRIYLGVHYPF
                     DILGGAVVGVFSALFCFWLLQRFSSVSNQKLTNLHVNTPVIVFGISLMGIVIYSLF"
     gene            complement(2401..3156)
                     /gene="hisF"
                     /locus_tag="VI413_05660"
     CDS             complement(2401..3156)
                     /gene="hisF"
                     /locus_tag="VI413_05660"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005854556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEY6914144.1"
                     /translation="MLAKRIIPCLDIKNGQTVKGINFENITNVGDPVELGALYAQMGA
                     DELVFLDITATNEKRKTLSELVTRIAKHINIPFTVGGGISSVEDVSVLLACGADKISV
                     NTSAVRNPQLISDLASQFGSQCVVLAIDTKYIDGEWYVFLNGGRIPTDIKTVEWAKQA
                     VALGAGEILLTSMNNDGTKDGFALDITRAVSEAVNVPVIASGGAGNMEHFVTVFDEGK
                     ADAALAASIFHYKEIGIPELKSFLKEKGVEVRI"
     gene            complement(3262..4572)
                     /gene="mtaB"
                     /locus_tag="VI413_05665"
     CDS             complement(3262..4572)
                     /gene="mtaB"
                     /locus_tag="VI413_05665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEY6914145.1"
                     /translation="MIDNSLFNNKKVVFHTLGCKLNFAETSAIGKQLGNEGFVKVRPG
                     EQADVCIINTCSVTDTADHKCRQVINRLNRLHPNATMVVTGCYAQLKPDEIAAIEGVD
                     LVLGANEKFSILEYLRNLDENKKGEVHRSEINRVTDFKPSCSRDDRTRYFLKVQDGCD
                     YFCTYCTIPFARGRSRNATIPDTVAMAMEAVNAGAKEIVLSGVNIGDFGKSTGEDFFD
                     LVKALDNIPADVRFRISSIEPNLLTDEIINYISTSHRFMPHFHIPLQSGTNEVLQLMK
                     RKYTRELFAYKVETIKRLMPDAFIGVDVIVGVRGETDELFEQSCKFIDSLDISQLHVF
                     TYSERAGTKMLDIEYSVDLKERKHRSEVLHALSDKKTKAFYESQRGKTYPVLWESRHH
                     GDNMVGFSANYVKAERPFDKSLVNSMQTVTLGEWNDERTALISK"
     gene            4723..5004
                     /locus_tag="VI413_05670"
     CDS             4723..5004
                     /locus_tag="VI413_05670"
                     /inference="COORDINATES: protein motif:HMM:NF015069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET family transporter"
                     /protein_id="HEY6914146.1"
                     /translation="MNLLEIVGFSASLLSVLNQFPQAIKVFRSQDTHSISLIMYCIVV
                     VAITLWLVYGIMLNDGPLIWANALSLIPIVYIFIIKLKNTVTGKDKLSI"
     gene            5272..>5822
                     /locus_tag="VI413_05675"
     CDS             5272..>5822
                     /locus_tag="VI413_05675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914147.1"
                     /translation="MKKSLLLFGFFLMCTCLSAQTLLQKVYIDFGPAASPGLNTASPD
                     GNGNKWNNHTALTADASTALVNHLGVASGLTLKNVNTCMANGGSTYGGLIAPTSALLG
                     DFAIANATQDYFFVQNGLNGTNSSTIKITGLNITKGYKFHIFGTRNSADPIRISKYTL
                     TGSIVTTGTLQTSGTNLGGMGYNG"
BASE COUNT         1748 a         1051 c         1089 g         1934 t
ORIGIN      
        1 cgaaggtgac taataatttt aaaacaactt cgtcgggagt aacgggttcg aaaataattg
       61 aatacatgtt cattcctcgt cattccggaa attttgagat cccggcaacc caattctcgt
      121 atttcgatac acaagataaa aaatataaag tgctaaccac ccctgtttat aaattgcagg
      181 tagctaaagg tgagggtggc gagagctcaa ctgttgtatc taattatatt gacaaagaag
      241 atgtcaagca attggctaaa gatatccggt atattacaac aaataaattt gtaattgaaa
      301 aagaagagga acctttattt ggagcactta tttgctggtt gatgtatttg atcccattgt
      361 ttatttcgct ggtattattt gttttcttcc gtaagcagat tattgaaaat gctaacgtaa
      421 gcctggtgaa gaataagaag gctaataaag tagcacaaaa gagattgaaa tatgctcaga
      481 aattgcttaa ggaaggtaat aaagataagt tctacgaaga ggtattgaaa gctgtgtgga
      541 cctatctgag tgacaaattg tcaattccgg ttgcaacact tacaaaggac cgggttgaat
      601 cagaattaac aaatcacaat gttgatttga cagttatcaa taaattcatt cagattttga
      661 atacgtgtga atttgcccgc tatgcaccta actcagggca acaggagatg ggaaatctgt
      721 atgatgaaac tatggaggca atcagtaatc tggaagaatt atacaagaaa ttttaaacac
      781 agcattcaga aaattatatg aaaagaatca ttctgttttt aagcttaatt ttgtgttttg
      841 gctctgtaat gttttctcag tcggcaacag tgaaacaagc caacgatttg tatgcaaagg
      901 gaaattatac ggaggcagca aagctatatg aaaaagtact ggctacagaa ggtgtagcac
      961 cggaactata ttataatctg ggtaatgctt attataaagc agcagaaacg ggtaaatcta
     1021 ttttgaatta tgaacgtgct atacgtcttt ctccaacttt tgaggatgcg catgtgaact
     1081 tagaactagc tcaattgaag gttgttgata atatcgtaca gactccgact ttctttttag
     1141 ggcgttggat tgataacctg attaaattgt tgacttcgaa tcaatggatt gttattagtt
     1201 tttctgtatt tattggcgga cttatattag ctttcctgtt tatttttgct ccatcgctat
     1261 ttatccgaaa aatgtccttt tatgttggat caacattgtt ggttataagt ttgtgtacgc
     1321 ttattttttc aggtgtgcgc aaagaccaac tggttaatca ccgcgaagca attgtgatga
     1381 ctggtgctgt tacggtaaag agttcgccag ataagagtgg gactgattta tttcagttgc
     1441 atgaaggaac taaggttgtg gttaaaagta cactcggaag atggaccgaa atcatacttg
     1501 gaaatggtaa cattgggtgg gtagagcagg aaaatatcga aaatatataa tccgatagaa
     1561 agcatgaacc tgatcagtac gttaaataca tatgatacaa acttgtttct gtttttaaac
     1621 ggattgcata cttctttttt tgatgggttc atgtatgctt ttagtgccag actgacctgg
     1681 attccattat atattgcggt tttatatatt gtgataaaac aatggaaaaa agatgctata
     1741 tggattgcta tttcttttgt agcatgtgtt ttgattgccg atcagatatc atcttctgtt
     1801 attaaagtaa tcgtccaacg tccacgtcct tcacatgcca tcgaactgca aggtttggtt
     1861 catttagtca ataactcccg tggaggaaag tttggatttg tatcatcgca tgcagctaat
     1921 actattggat ttgcattact ttcttcattg cttttcaaga gtcggtttta tgcagttata
     1981 atcttttcgt gggcaatact aactgcctat tcccgaattt atttaggggt tcactatcct
     2041 tttgatattc ttggaggagc tgttgtcgga gtcttttcag ctttattttg cttttggtta
     2101 ctgcaaagat tttcctctgt atcaaaccaa aaactaacaa atttacatgt aaatactccc
     2161 gttatagttt ttggaataag cttaatgggg attgttattt acagtctctt ttaatatttg
     2221 aataaatttc ctttttttct gactgaaact aatagtccgg ttgagttccc taacaacttt
     2281 tcgaaatcaa aaatattacc tgagaccaat agctggttta gtatcatcct ggatattttc
     2341 atatagactt taattgccgc aatgacagtg tgtctgcaat cagacgccac tctctaatca
     2401 ctatattctc acttctacac ctttttcttt tagaaaagat tttagttcgg gaattccgat
     2461 ttctttataa tgaaaaatac ttgctgccag ggcggcatct gcttttcctt catcgaaaac
     2521 agtcacgaag tgctccatat ttcctgcacc tccactggca ataaccggaa catttacagc
     2581 ttcggaaaca gcacgtgtga tatccagcgc aaatccatct ttggttccat cattattcat
     2641 cgatgtaagc aaaatctcgc cagcaccaag tgctacagct tgtttagccc attcaactgt
     2701 tttaatgtct gtaggaattc gtccgccatt gagaaaaaca taccattctc catcaatata
     2761 ttttgtgtca atagctaata ctacgcattg actgccgaac tggcttgcca gatcgctgat
     2821 taattgcggg ttgcgaacag ctgatgtgtt tacagaaatt ttatcggcac cgcaggccaa
     2881 cagtactgaa acatcttcta cgctggaaat tcctccgcct acagtaaaag gaatgtttat
     2941 atgtttggca atccgtgtaa cgagctccga caatgtttta cgtttttcgt ttgttgcagt
     3001 tatgtcaagg aaaaccaact cgtcagcacc catttgagcg tacaaagcac caagctcaac
     3061 aggatcacct acattggtaa tattttcaaa attaatacct tttactgttt gtccgttttt
     3121 gatatccaga cagggaataa ttcgttttgc taacaccgtt ttataattta caagttaaga
     3181 atatattttt caaagcttaa gaatcaagag acagaaatca ggaatcgaga ctttttgcat
     3241 actgtttact tcagactgcc actacttact aatcaaagct gttctttcgt cattccattc
     3301 accaagagtt acggtttgca ttgaattaac cagcgattta tcgaatggtc gttcagcttt
     3361 tacatagttg gcactgaaac cgaccatatt atcgccgtga tgccggcttt cccacaaaac
     3421 aggatatgtt ttcccccgct ggctttcgta aaacgctttt gtttttttgt cagacaatgc
     3481 atgtaaaact tcgcttcggt gtttgcgttc tttcagatct acagaatatt ctatatcaag
     3541 catttttgtg cctgcgcgtt cagaataagt gaaaacatga agttgtgaaa tgtccagtga
     3601 gtcgataaac ttgcatgact gttcaaaaag ctcatctgtt tcaccgcgaa caccaacaat
     3661 aacatctaca ccaataaatg catcaggcat taaccgttta atagtttcaa ctttatatgc
     3721 aaataattca cgtgtatatt ttcttttcat cagttgcagc acttcatttg tccctgattg
     3781 taacgggatg tggaaatgtg gcataaaacg gtggcttgta gaaatataat tgattatttc
     3841 gtcggtaagc aagttgggct caatggatga aatacgaaaa cggacatcgg cggggatatt
     3901 atccagtgct tttaccagat cgaaaaaatc ttcgcctgtt gatttcccaa aatcaccgat
     3961 atttactcct gaaagaacta tttctttggc tcctgcatta actgcttcca tagccatagc
     4021 tactgtatca ggtattgttg cattccggct tctcccacgt gcaaaaggaa tggtacaata
     4081 ggtacaaaaa taatcgcatc catcctgtac tttcagaaaa taccgggtac gatcgtcgcg
     4141 ggagcaagat ggtttaaaat cagtaactcg gtttatttcg gatcgatgaa cttcgccttt
     4201 cttgttttcg tcaaggttac ggagatattc aagaatactg aatttctcgt ttgcaccgag
     4261 aactaaatca actccctcaa tggctgctat ttcatctggc tttagctgtg cataacatcc
     4321 ggttacaacc atggtggcat tcggatgcag ccgatttagc ctgtttatta cctgccgaca
     4381 tttatggtca gctgtatccg ttaccgagca ggtatttata atgcacacat ctgcttgttc
     4441 tccgggacgg acttttacaa atccttcgtt cccgagttgt ttgccaatag ctgaagtttc
     4501 agcaaaattc agtttgcaac cgagtgtgtg aaatactact tttttattgt tgaataagga
     4561 attatctatc atgttttaag tgcaaaattt gctggtgcaa aggtagtaaa aatagttgtt
     4621 agttgataat tgcaggtttt attgagttct taagtaatgc ttgtatattc gttttctttt
     4681 gtatttttgc ctccaaataa atctatcaaa aaatcaaata acatgaattt actcgaaatt
     4741 gttgggttct cagcttcatt attatcagtt ttaaatcagt ttccacaagc catcaaggta
     4801 tttcgttcgc aagatacaca tagtatatca ctgataatgt attgtatagt ggtggtggcc
     4861 attacacttt ggttagttta cggaattatg ctgaatgatg gaccgcttat ttgggcaaat
     4921 gcattatcat taatcccaat tgtttatatt tttataatta aattgaaaaa cacagttacc
     4981 ggaaaagaca agctgtcaat ctgattgatt atattttttt gtttaacgat taagcctgaa
     5041 tctgacaatt caggcttttt tgttttaaaa taaacaacac atctacagtt gatgatagtt
     5101 atttttatag ctcaaattaa ataatttaag tgcttagtgt gtatttaaca ccttttgtat
     5161 ttataaatat aaaaaatcaa tatatatttg cggcgaaata cacattgtga ttatgacact
     5221 atgtgttgga ttaaatctaa aacattatct aattaaactc acacaaatgt catgaaaaaa
     5281 tcactactcc tttttggctt ctttctaatg tgcacatgtt taagtgctca aacgttatta
     5341 caaaaagttt atatcgattt tggacccgct gcttcgccgg gattgaacac tgcaagtcct
     5401 gacggaaacg gaaataaatg gaataatcac acagcactta cagccgatgc cagcaccgca
     5461 ttggttaatc atctgggtgt tgcttccggt ctgactttga aaaatgtaaa tacttgtatg
     5521 gcaaatggcg gaagtactta tggcggatta attgctccaa catctgctct tcttggagat
     5581 tttgcaattg caaacgctac tcaggattat ttctttgttc aaaacggact taacggaaca
     5641 aattcttcaa ccattaagat tactggtttg aatattacaa aagggtataa atttcacatc
     5701 tttggaaccc gaaattcagc cgacccgata agaatttcaa aatatacttt aaccggttca
     5761 attgtaacta ccggaacatt acaaacttct ggtacaaact taggtggaat gggctataat
     5821 gg
//
LOCUS       DATDNM010000340         3550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1858938, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000340 DATDNM010000000
VERSION     DATDNM010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3550
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1858938"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..363
                     /locus_tag="VI413_05680"
     CDS             <1..363
                     /locus_tag="VI413_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008648034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4301 family protein"
                     /protein_id="HEY6914148.1"
                     /translation="FLTVNADGTVSPQILESSQIDLNNPADKEKMLGSTHFNPVDLVC
                     GVKNYKGEKFDLVKFVDKNTGFISLKSKNGKELKALELPGLWNGAMSDWNTIFVEVPI
                     ETFNPVKTVNDLLRPEHQ"
     gene            complement(426..1244)
                     /locus_tag="VI413_05685"
     CDS             complement(426..1244)
                     /locus_tag="VI413_05685"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY6914149.1"
                     /translation="MKRLFLILITVLILSESCAEKKESATIVCLETTYGKISLKLYPE
                     TMKHRANFIKLVDSGYYNGVLFHRVIANFMIQAGDPDSKVAKPKATLGSGSVGYTIPA
                     EFVYPEYYHKRGALAAARKGDDVNPKKESSGCQFYIVQGRIFTDEELDGFEENNKQKL
                     EGKLFQEILNTKQNLVQRYRSEQDQARLDKLRESILEDVHRKLETDSTYKFTEQQRSD
                     YKTIGGTPHLDGEYTVFGEVVEGMDVVDKISQVPVGKNDRPVEDIKVLKATVIR"
     gene            1402..2355
                     /locus_tag="VI413_05690"
     CDS             1402..2355
                     /locus_tag="VI413_05690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HEY6914150.1"
                     /translation="MYEALKQLDPIRINFSASGMHIINVVLCFVMFGVALGIKASHFR
                     NLIQNPKLALTGLFSQLVALPLITFILIAVFNKYLTPTVAMGMILVAACPGGNISNFM
                     SSYSKANTELAVGLTATSTLLATFSTPFNFAFWGGLYNTFINNHAGTLLQKPLEIDTI
                     QVFETVFILLGIPIVLGILFSNKLPKITEKIKKPLQNLSLVFFLGMIVMAFMNNVDIF
                     LKYIFYTFIIVLVHNGLGLLTGYSIASVFNLTDTNRRTLTIETGIHNSGLGLLLLFNP
                     KIFPYDLQIGGMIFVVAWWGIWHIVSGLSLATYWHRKELTA"
     gene            2411..>3550
                     /locus_tag="VI413_05695"
     CDS             2411..>3550
                     /locus_tag="VI413_05695"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEY6914151.1"
                     /translation="MSNIYDFPLSFSLIKKYITFTFKRFYGEYIVVGKENIPTDCPVI
                     FAPNHINALMDALAVHSVVPHKMPVIFLARSDMFKNKTIAKALNFIKIMPAFRMRDGV
                     ENLGKNNEIFERCVEVLHQNKALGIMPEGNQEIERKLRPLVKGIFRIAFAAQQKYGNQ
                     PGVKIIPVGLDFGSIVKSHKHIIINIGKPIEVSDYMDTYDANPVTATNEIRDRLKNDL
                     IQATLNLDTDKYYQCFETATVIANTTYLNKLQLPDKTIFRFVARQKLAEKLIEIEKTG
                     TNTIEKLELLCTKYTKILNKIKLQNWVLEEAPFNKLPLFLEILFLIATFPIFLYGFIL
                     NFLPFFSPVYLRKNVFKTEFTGFFSSLQYILGIITFPLFYTMQTIL"
BASE COUNT         1154 a          714 c          561 g         1121 t
ORIGIN      
        1 ttccttactg taaatgctga tggaacagta tcgcctcaaa ttctggaaag ttctcaaata
       61 gatctgaaca atccggctga caaagaaaaa atgcttggct caactcactt caatcccgta
      121 gatttggttt gtggagtaaa aaactacaaa ggagagaaat ttgacctggt aaaatttgta
      181 gacaaaaaca caggattcat ttctttaaaa tctaaaaatg gaaaagagtt gaaagccctt
      241 gagcttccgg gactttggaa cggtgctatg agcgactgga atacaatctt tgttgaagtt
      301 cctattgaga cattcaatcc ggttaaaaca gtgaacgacc tgctaagacc tgaacaccaa
      361 taaatatcca gcaaaagagc ttcacctaac aagtgaagct ctttttataa ggcacaattc
      421 aacaactaac gaattactgt tgctttcaac accttaatgt cttcaaccgg acgatcattc
      481 tttccaaccg gtacttgtga tattttatca actacgtcca ttccttcaac cacttcccca
      541 aaaacagtat attcaccatc caaatgtgga gttccgccga ttgttttata atcacttcgt
      601 tgttgctctg taaacttgta agtagaatca gtttcaagtt ttctatgcac atcttcaagt
      661 attgattcac gcaatttatc aagtcttgcc tgatcttgct ctgaacggta tctctgcacc
      721 aaattctgct ttgtgttcag aatctcctgg aacaattttc cttcaagttt ctgtttgtta
      781 ttttcctcaa acccatccaa ttcctcatcc gtaaaaattc gtccctgaac gatgtaaaac
      841 tgacaacctg aagattcctt tttcggattc acatcatcac ctttacgcgc tgcagccaat
      901 gccccacgct tgtgataata ctctggataa acaaactctg cgggaatagt atagcctacg
      961 ctacctgaac caagcgttgc ttttggctta gcaactttcg agtccgggtc tccggcctga
     1021 atcataaaat tggcaataac acgatggaat agcaccccat tatagtatcc ggaatcaaca
     1081 agttttataa aattggccct atgcttcatc gtttccgggt acaactttaa cgatattttc
     1141 ccgtatgttg tttcaaggca aactatggta gccgactctt ttttttcggc acatgattcg
     1201 gacaagatca acaccgtaat taaaattaaa aataatcttt tcagcataac aaaatagttt
     1261 tataaaaatt aatccacttt caacagcaaa agtaattaaa tattatcctt tattaaaaaa
     1321 aatggaagaa tggtatctgt ttacaatcat aacaataata ataatttcat atatttgcag
     1381 tacaaaaaca gactaaaact tatgtacgaa gcactaaagc aactagaccc tatcaggata
     1441 aatttttctg catcaggcat gcatataatc aatgttgtac tttgttttgt tatgtttgga
     1501 gtagcactgg gtataaaagc atctcatttc cggaacttaa tacaaaaccc caaattagcc
     1561 cttaccggtt tattttcaca actagtcgcg cttccgttaa ttacattcat tttaattgct
     1621 gttttcaata agtatttaac accaacagtg gcgatgggaa tgattttagt ggcggcttgt
     1681 ccgggtggta atatatcaaa tttcatgtct tcctactcaa aagcaaatac tgaattagct
     1741 gtcgggctta cggccacatc aacattactg gcaactttca gcacgccttt caattttgca
     1801 ttttggggtg ggctctataa tacctttatc aataaccatg cagggactct gttacaaaaa
     1861 ccattagaaa tagatactat tcaagtattc gaaactgtct ttattttact cggaattcca
     1921 atagttttag gtatactttt ttcgaacaaa cttcctaaaa ttactgaaaa aataaagaaa
     1981 cccttacaaa atctgtcttt ggtatttttt cttggaatga ttgttatggc gtttatgaac
     2041 aatgtggata tatttctgaa atatattttc tatacattta tcatagtttt agttcacaac
     2101 ggattaggcc ttctcactgg ctattcaatt gcgtctgtat ttaatctcac cgacacaaac
     2161 agacgaactt taaccatcga aacaggcata cataattccg gcttaggttt actgttgctt
     2221 tttaacccca aaattttccc atacgatttg caaattggtg gtatgatatt cgtagtggca
     2281 tggtggggta tctggcacat agtttcaggt cttagcctgg ccacttattg gcatagaaaa
     2341 gagctaacag cctagttttt acaatcgata agaaaatagt ctcgcttcaa ccctaattgc
     2401 acaaccgctt atgtccaaca tatacgattt tccactttct tttagtttaa tcaagaaata
     2461 cattactttc acattcaaac gcttttacgg agagtatatt gtagttggca aagaaaatat
     2521 ccctactgat tgtcctgtta ttttcgctcc gaatcacata aatgcgttaa tggatgcatt
     2581 agcggtccat tcagttgtgc cacataaaat gcccgttata tttcttgcac gatcagacat
     2641 gttcaagaat aaaacgatag caaaagcatt aaacttcata aaaattatgc cggcattcag
     2701 aatgcgcgac ggagttgaaa accttgggaa aaacaatgaa atattcgaac gctgcgtaga
     2761 agttcttcat caaaataaag ctttgggaat tatgcccgaa ggaaatcagg aaattgaacg
     2821 taaactccga ccacttgtaa agggaatttt caggattgcc tttgctgctc aacaaaaata
     2881 tggtaatcaa ccgggcgtaa aaattatccc tgtgggactc gattttggaa gcattgtaaa
     2941 atcacacaag cacatcatca tcaatatagg caaacctata gaagtgtcgg attatatgga
     3001 tacttatgat gccaatccgg taactgcaac aaatgaaatt cgcgacagac taaaaaatga
     3061 tctgattcag gctacactta atctcgacac cgataaatac tatcagtgct ttgaaaccgc
     3121 aactgtaatt gccaatacaa cttatttaaa taaacttcag ctgcccgaca aaactatttt
     3181 cagatttgtt gctcgtcaaa aattagccga aaagctaatt gaaatagaaa aaaccggaac
     3241 aaacacaatt gaaaaattag aattactttg tacaaagtac actaaaatcc taaataagat
     3301 aaaattacaa aactgggttc ttgaagaagc tccatttaac aaattgcctt tatttttaga
     3361 aatcttattt cttatcgcta cttttccaat tttcttatac ggttttattc taaacttttt
     3421 accatttttt tcaccagtct atcttcgcaa aaatgttttt aagactgaat tcacaggttt
     3481 cttcagctca ttgcaatata tacttggaat aattacattt cctctatttt acacaatgca
     3541 aacaatttta
//
LOCUS       DATDNM010000341         3237 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1752138, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000341 DATDNM010000000
VERSION     DATDNM010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3237
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1752138"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            302..>3237
                     /locus_tag="VI413_05700"
     CDS             302..>3237
                     /locus_tag="VI413_05700"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6914152.1"
                     /translation="MKDKLSNSHVNNIYQDKHGYIWICTDNGLNVFDGSEFKTYYHRQ
                     NDSTSLIDNSVLTVYEDRKGNFWVGTTAGLQLFNRDTEQFSTIHFSYPRITDFSYFSC
                     ILEDSKGNIWVSTSRSGAICLRPGNHQPIYYMQTNSNICSNKINTLFEDRFGNIWIGS
                     QDNGISILNIQNHTLVNYSFNPADVNSLSSNKVFSILENADGNILVGTIDGGINLFRY
                     SDKRFVRNYIPSGDVVFTMKRGNKNNLWIGTDGLGLKSYDYATKKITTYETDLNTVDL
                     RKAKVHCVLQDNDGNLWIALYQDGILMIPEKKKVFRNIGFNSFYSEKSIGSECVLSVL
                     EDSNAKVWVGTDGDGIYRLDAQHRVEKHYLNEKLDASVILSIFEDKDKRIWVGSYLYG
                     LFLYNSGADRFQKIPLVVNGREVKDINIIKGDANGNLWIGTNENGLCFYNPATKQIQS
                     YTYDLLKTGNQISSNSVQTILLSGNYVWIGTSSAGLSCLNTRTNTFTDYKKENGKLNN
                     NNITVITRDRQNNIWLGTKQGLQCLDLKKGALKLYTEADGLSNSSITGIEVDKHNNLW
                     ISTSLGLSHFNRANNTFINYYVSDGLINDEYRRGAFFQSKSGELFFGGTEGLSSFYPF
                     KIEEPARLKNLVFTNLFIYNEKVEVGENSFLKKNINAAEKITIDHNIKSFSLGFVALE
                     YNNPGKVVYQVKMEGFDNEWKTLPMGSKLATYTNLTYGKYRFHVKAYFPNSTPIERSI
                     TVVVLPPFWLSWFAKLIYFLVVLALGYLGYKRMLFRAEQQKIELQKDSEKQIMQSKLQ
                     FFTDISHEIRTPLTLILTPIERLIKETPDGALRNTYKLINQNGQRMLRLVNQIMEMRK
                     LDRGQVKLSTSETDVYAFVKEIASSFNNIVDERKCDFRIEFAEGLPKVWIDHEKMDKV
                     IFNVLSNAFKYTPKEGKIDLRVDSYEGNLRIRISDTGPGIPVDQRETIFNRFYQIQNE
                     SNYNKIG"
BASE COUNT         1049 a          542 c          677 g          969 t
ORIGIN      
        1 tgtaaataaa tccatggtat tttcaattat gagtttagtg ttgcataaat gtcgcaaaga
       61 gttatatgat tgtagcatga ggataaaatg gctttattat ggccgaaaag tattattttt
      121 gtgaggtaaa gttgtatgaa ttattttgat acaaagtttt atattccaat aaaaaattca
      181 cgcattcacc caaaatctat tatttgtgct actctttatt aatcgacaga tttttattat
      241 ttgcttattt gtagcatgtt gttgtacaaa tctaaatgca aatacagata agttttatgg
      301 attgaaagac aaactctcca acagccatgt caacaatatt taccaggata aacatggata
      361 catctggatt tgcacagaca atgggctaaa cgtttttgac ggttccgaat tcaaaacata
      421 ttaccatcgg caaaacgaca gcacatccct catagacaat tcggttttaa cagtgtatga
      481 agatagaaaa ggtaatttct gggtcggtac aacagccggg cttcaactct ttaaccggga
      541 taccgagcag tttagtacca ttcatttttc ctatccccgc ataactgact ttagctattt
      601 tagttgtata ctggaagata gcaaaggaaa tatttgggtt tcaacgagtc gttccggagc
      661 tatctgcctt cgtccgggta atcaccagcc catatattac atgcaaacga atagcaatat
      721 ttgcagtaat aaaataaaca cgcttttcga agatcgattt ggcaatatat ggattggctc
      781 gcaagacaat ggaataagca tcctgaatat tcagaaccat accttagtga actattcatt
      841 taatccggcc gatgttaact cgttgtcgag taataaagtt ttttctattc ttgaaaatgc
      901 tgatggtaat atccttgttg gtacaatcga tggtggaata aatctgtttc gctattccga
      961 taaacggttt gtgcgaaatt acattccctc cggggatgtt gttttcacca tgaaacgggg
     1021 gaacaaaaac aatttatgga tcgggactga tgggctcgga ttaaagagtt atgattatgc
     1081 cactaaaaaa atcaccacct acgaaaccga tttaaatacc gttgacttgc gtaaagctaa
     1141 agttcactgc gttttgcagg acaatgatgg taatttgtgg attgcactgt atcaggatgg
     1201 tatattaatg attccggaaa aaaagaaagt cttccggaat ataggcttta actccttcta
     1261 ttcagaaaaa agtattggca gtgaatgtgt cttgagtgtc ttggaagata gtaatgctaa
     1321 agtttgggtt ggtactgatg gagatggtat ttacaggctc gatgcacaac atagagttga
     1381 aaagcactac ctcaatgaaa aattggatgc aagtgttatc ctctcgatct tcgaagataa
     1441 agataaaaga atatgggttg gaagctattt atacggactg tttttgtaca atagtggcgc
     1501 cgataggttt cagaaaattc cacttgtagt caatgggcga gaggttaagg acataaatat
     1561 tatcaaagga gatgccaatg gtaatttatg gattggaaca aacgagaatg gcctgtgttt
     1621 ttacaaccca gccacaaaac agatccaaag ttatacctac gatttattga aaaccggaaa
     1681 ccaaatatca agtaattcgg ttcaaacgat tttgctcagc ggcaattatg tgtggattgg
     1741 tacgagtagt gccgggctca gctgcctgaa tacccgaacc aatactttta ccgactataa
     1801 gaaagaaaat ggtaaattaa ataacaacaa cattaccgtc ataacccgtg acaggcaaaa
     1861 caatatctgg ctgggaacca aacagggttt acaatgcctt gatctgaaga aaggtgccct
     1921 gaaactatat accgaagccg atggtttgtc gaactcttcg attacgggta ttgaagtaga
     1981 taagcacaat aacctgtgga taagcacaag tctggggttg tcccacttca atcgggcaaa
     2041 taacactttt attaattatt acgtgagcga tggcctgata aatgatgagt accgccgagg
     2101 agcttttttt caatcaaaat ccggtgagtt gttttttgga ggaacagaag gactcagttc
     2161 tttttatcca ttcaagattg aagaaccagc tcgtttaaaa aatctggtat ttacgaatct
     2221 ttttatttat aatgaaaaag tagaagttgg tgaaaactcc tttttgaaga agaatatcaa
     2281 cgctgctgaa aaaattacca ttgatcacaa tatcaagagt ttctcgttgg gctttgtagc
     2341 gttagaatac aataatccgg gcaaagttgt ttatcaggtc aaaatggaag gttttgataa
     2401 tgagtggaaa acgttgccaa tgggaagtaa gttggcaacc tacacaaatc tcacgtatgg
     2461 aaaataccgg tttcatgtaa aagcttattt ccccaattca acacctattg agcgcagtat
     2521 aacggtcgtt gttttacctc cgttctggct gtcgtggttt gcgaaactga tttattttct
     2581 tgttgtgttg gctttgggtt atttgggtta taaaagaatg ttgttcaggg ctgagcagca
     2641 gaaaatagag ctgcaaaagg atagcgagaa acagataatg caatcgaaac ttcagttttt
     2701 tactgatatc tcccatgaaa tacgcactcc gttaacgctt attcttactc cgattgaaag
     2761 actgattaaa gagacacctg atggtgcatt gcgaaatact tataagctta taaatcagaa
     2821 tggacagcgc atgcttcgtt tggtgaatca gattatggag atgcgtaagt tagaccgtgg
     2881 acaggttaag ttatcaacca gcgaaactga tgtatatgcg tttgtaaaag agatagcgtc
     2941 ctcattcaac aatatcgtgg atgagcgcaa atgcgatttc cggattgaat ttgccgaggg
     3001 actccctaaa gtgtggattg atcacgaaaa aatggataaa gtaatcttta atgtgctttc
     3061 aaatgctttt aaatatactc ccaaagaagg aaagatagat cttagggtag atagttatga
     3121 gggtaatttg cgcattcgaa tatctgatac aggtccggga attccggttg atcagcgcga
     3181 aacaattttc aaccgttttt atcagattca aaacgaaagc aattataata aaatagg
//
LOCUS       DATDNM010000342         3085 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_471260, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000342 DATDNM010000000
VERSION     DATDNM010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471260"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1540)
                     /locus_tag="VI413_05705"
     CDS             complement(<1..1540)
                     /locus_tag="VI413_05705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007480126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY6914153.1"
                     /translation="MSLYESSVRKPVMTSIIFIAVVILGLFSYDRLPIDLLPKIETNT
                     IMVMTTYDGASASDVETNVTRPLESSLNTVSNLKNIKSTSKENRSIITMEFDYGLDLN
                     VVTNDIRNKLDLVSSYMPAGAGNPIIFKLSTDMIPVIMLSATANQSLPALYKILDTKV
                     ANPLARINGVGSVSISGAPQREIQVYVDPIKLEAYHLTVEALAQYIRMENVNTPAGSM
                     DVGSDTYALRVEGEFKDPSELNNIVVGNFNGKTVRLSDVAIISDQHEERMQESFTNGV
                     QGAAIIVQKQSGANTVQIANEVKKMLPEIQKNLPSDIKLSVINDTSDNIIRTIDSLAE
                     TVIFALLFVMIVVLFFLGRWRATVIIILTIPISLIAAFIYLALTGGTLNIISLSSLSL
                     AIGLVVDDAIVVLENITTHIERGSRPKTAAVNGTNEVGLSIIASTLTIIAVFLPLTMV
                     SGMAGVMFAQLGWMVTIIITVSMICALTLTPMLSSQLLRLDPNRSKGFNMVYGPIERF
                     LDKLD"
     gene            complement(1642..2661)
                     /locus_tag="VI413_05710"
     CDS             complement(1642..2661)
                     /locus_tag="VI413_05710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004291200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY6914154.1"
                     /translation="MKKINLIGMLLLALVIGLTSCNKEKKTETAVVVETPNVRIHAVA
                     EREVEQTYELTASVQPDAKNSIAPSAPGRIRTILVEVGQHVSKGQKLVQMDVANLSNL
                     ETQIENVKRIYKRTQELFNVGGASQQDLDNAKLQLDVAQTNLKNLTENTFLLSPISGV
                     ITARNYDNGDMYGGQMPVLSVMNINPVKLLINVSESYYSQVKVGMPINIKFDVFDGQN
                     FQGKVSLIYPTIDERTRTFSVEVKLNNNNNKVRPGMFAHVIFEFGKVKRVVAPDKAIV
                     KQAGSGAKYVYAYNEGKVEYKQVEVGRRVDSDYEILSGLSAGEQIVVAGQAKLVDGAT
                     VNVIK"
     gene            complement(2709..>3085)
                     /locus_tag="VI413_05715"
     CDS             complement(2709..>3085)
                     /locus_tag="VI413_05715"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY6914155.1"
                     /translation="VQLSIPIFQGGARVYKEKQLKIQKDQLKDQRDNLRRGLEMQAIS
                     YLDNIKKAIEKIESNKEGLRQAEKAVAISKKMYEVGSSTYLDLSNSELAYIQAGLMYN
                     QSIFDYLSAKSDLEKLLGKDSK"
BASE COUNT          945 a          719 c          507 g          914 t
ORIGIN      
        1 catccaattt atccaaaaat cgttcaatcg gcccgtaaac catgttaaat cctttgctcc
       61 gattgggatc aaggcgtaac aattgcgaag acaacatcgg agtcagcgtt aaggcacaaa
      121 tcatagacac agtgataatt atagttacca tccatccaag ttgtgcaaac ataacacccg
      181 ccattcccga aaccattgtc aacggaagga atacagcaat aatcgtgagc gttgaagcaa
      241 taattgaaag cccaacttca ttagttccat ttactgctgc agttttagga cgactaccac
      301 gttcgatatg tgtcgttata ttttccaaca ccacaatggc atcatccacc accaaaccga
      361 tagcgagcga caaagaacta agcgaaataa tattcaatgt accaccggtg agagccagat
      421 atatgaaagc tgcaattaac gaaattggaa tggtcaggat gataatcacc gttgcacgcc
      481 agcgtcccag gaagaacaaa actacaatca ttacaaacag cagggcaaat attacagttt
      541 cggccaaact gtcaattgtc cggataatat tgtccgatgt atcattaatg acactaagtt
      601 taatatcaga agggagattc ttttgaattt caggtaacat cttttttact tcatttgcaa
      661 tctgcaccgt atttgcccca gattgtttct gaacaataat ggcagccccc tgcacaccat
      721 tagtaaaact ttcctgcata cgctcttcat gctgatcgct tattatagca acgtcagaca
      781 agcgaactgt tttaccgttg aaatttccga ccacgatatt gttcagttct gaaggatctt
      841 taaattcacc ctcaacacgc aatgcataag tatcactacc aacgtccatc gaacctgcag
      901 gagtattcac attttccatg cgaatatatt gtgccagcgc ctcaactgta agatggtatg
      961 cctcaagctt gattgggtca acataaacct gaatttcgcg ttgtggagca ccactaattg
     1021 aaaccgaacc cacaccatta atacgtgcca atggattagc cacttttgta tccagaattt
     1081 tgtacaatgc cggcaaactt tggtttgctg tagccgaaag cataattacc ggaatcatat
     1141 cggtgctgag cttgaaaata attggattac ctgcaccggc cggcatgtaa gaggacacca
     1201 aatccaactt attacgaata tcattggtta caacattcag atccaatcca taatcgaact
     1261 ccatcgtgat aatcgaacgg ttttccttcg aagtggattt tatatttttc aaatttgaaa
     1321 ccgtattcag agagctttcc agcgggcgcg ttacatttgt ttcaacatct gaagcactgg
     1381 caccatcata agtcgtcata accataatgg tgttagtttc aatcttaggt aacaaatcaa
     1441 tcggcaatct atcataggag aaaagaccta aaataaccac cgcgataaat attatcgaag
     1501 tcattaccgg ctttcgtacc gaactttcgt ataaactcat attctttatt ttttagacag
     1561 caagtgacaa gcggttagag ataacagaga accaaaacac acaaactact tactataaaa
     1621 cattaattac aaactattta ctcacttgat aacgttgacc gtcgccccat ctaccaactt
     1681 agcctgacct gcaacaacaa tttgttcacc ggcactaagt ccagataaaa tttcgtaatc
     1741 agaatctact ctgcgcccaa cttccacttg cttatattct actttgccct cgttatatgc
     1801 ataaacatat tttgcacccg aacctgcctg ttttactata gctttatccg gagcaacaac
     1861 acgtttcacc ttcccgaatt caaaaatcac atgggcaaac atacccggac ggactttatt
     1921 attgttatta tttagtttta cctccactga aaaggttcgt gtacgctcat caatcgttgg
     1981 ataaatcaga ctaactttcc cctgaaaatt ttgcccatca aaaacatcaa acttaatgtt
     2041 gataggcata ccgactttta cctgagaata gtatgattcc gacacattaa tgagcagttt
     2101 caccggattg atattcataa ccgacagcac aggcatttgg ccgccgtaca tatcgccatt
     2161 gtcgtaatta cgggcagtaa tcacgccact tatcggactc agcaggaaag tattttcagt
     2221 cagatttttc aaattagtct gagctacatc gagttgaagt tttgcattat ctaaatcctg
     2281 ttgcgatgcg ccaccaacat taaaaagctc ctgggttctt ttatatatgc gctttacatt
     2341 ctcaatctga gtttccagat tcgaaagatt ggcaacatcc atttgcacca gcttttgccc
     2401 cttagaaaca tgctgaccca cttccaccag aatagtacgg attcgtcccg gagctgatgg
     2461 ggcaatactg ttttttgcat cgggttgcac cgaagccgtt aattcataag tctgttctac
     2521 ttcccgctcg gctactgcat gtattcgaac attaggagtt tcaacaacta cagccgtttc
     2581 ggttttcttt tctttattgc acgaagtcaa tccaataacc agcgcaagaa ggagcattcc
     2641 aattaaatta atctttttca tatcgatatt attttacttt ttatatttct ttcaccacaa
     2701 actataaact attttgaatc ttttcctaac aatttttcta aatccgactt tgccgacaaa
     2761 taatcgaaaa tagactggtt atacattaaa ccagcctgaa tataagccaa ttccgaattg
     2821 gacaaatcaa gataagtgct tgacccaacc tcatacattt tcttagaaat agctacagct
     2881 ttttcggcct gacgcaatcc ttctttgtta gattcaattt tctcgatagc ctttttaata
     2941 ttgtccagat aagaaatagc ctgcatttca agacctctcc gcaaattatc acgctggtct
     3001 ttcaattggt ccttttgaat tttcaattgt ttttccttat acactcttgc tccaccctga
     3061 aagattggaa ttgacaactg cacag
//
LOCUS       DATDNM010000343         6772 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1859416, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000343 DATDNM010000000
VERSION     DATDNM010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6772
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1859416"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            272..4033
                     /locus_tag="VI413_05720"
     CDS             272..4033
                     /locus_tag="VI413_05720"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HEY6914156.1"
                     /translation="MEKRTFYLILLFQLVLNMSFISGQQAYQNGWNAFMKNDRTEARK
                     YFTQAISDPASGPEALISLSLLDWNENKLDAAFQNFQKFYETSPNPYPYLYAMSALPF
                     MFEQNNRLEPEKLAFFEKISNDSKMNGTLKAMIIAQLGSHYESSNNAKKAAEYYAKMG
                     ALNRWQVLGSFDNTSGSGFSKDWGAVSKPTQTATFKNKADANVSWYSPGYNNVNNWFH
                     FDYYFYLTNAIMYAQTFVNSAIDQEVYLRAGTSGSLKMWVNDALVSSVPEERNCDLDI
                     YSYKVKLNKGNNRILVQIGLSEIERANFLIRITDENANPLANITSSPEYADYTKSSEK
                     FSCEQLPFFAEEYFSSKIESSKNNPLNYFLLAETYLRNDKSYDATKTLRNLEASAGKS
                     TLSSYRLYEAYIRAQNQTDYEKEMETIKSSDPNSYISLQTKYTEAVKAEKYTEAVDIC
                     KKVKELYGESPVTDEWEINLASYEKRFDDVIAMAKKLYKKYPENNDYMQINYVIEKNV
                     SKNPKGAILILEDYLKNHNNSEVVDLLSKSYLELGNTEKGLAVLYKRLESKPYATGYY
                     ENLISVLFGMQKYDQALALSEKALNLAPFLPNLYTTRGYIYKNANQPEKAKENFEKSI
                     YFGPTSYDSRTQLRLLANKKEVYELFPKNKLQDLIANAPKSKDYPEDNSFILLNDFQQ
                     VIYPEGAKEYHRELATKILNQSGIETWKEYTIGYNSYNQKLIIDKAEVLKANGSTVKA
                     ETDNNNQIVFTNLEVNDVLHLEYRIQDLSTGKLASHFFDHFQFQYSIPSGVCRYSILI
                     PEDKKFNYLVTNGNIEPVITTVENMKLYKWELNNQPAVKDEPHMSALGDVAPTLYYSS
                     MPDWKFVSDWYKDLTTSKFNSDFVLKETVNGLLNGKENLSKLEKAKIFYNYILENITY
                     SSVDFLQSNYIPQKASRTITTRLGDCKDLSTLFVALCREVGINANLVLISTRNNGNHT
                     LVLPGIGFNHCIAQLNIDKQKYYLELTDNTLPFGSALKADLNSEILPIPYSDEQFGDK
                     LLTLEMPARKSNCSVRNHKISFSKNDMTIERQLICYGAMASYQRNDFKNIGADEQLKQ
                     MNEAVAKEFEVSTKVSNLNFRELDNLADSVVVNYKVDVKNAMQDVAGMKILRLPWTDT
                     NSLDIVAAEDRKFPFEYWSYQTEDKTTEKMVIELQQGKKLVEVPQNMNFDCPTATYSL
                     KFDTNTPGKVIVTRHFERKADQITTKDYPAFREFLNKVSEADSKQYAIK"
     gene            4587..5321
                     /locus_tag="VI413_05725"
     CDS             4587..5321
                     /locus_tag="VI413_05725"
                     /inference="COORDINATES: protein motif:HMM:NF040365.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6261 family protein"
                     /protein_id="HEY6914157.1"
                     /translation="MLIKNIHLNALQNEEHAGYHTYVSEYLTEDDNANSKVQVQLSDY
                     KLKLGIEKSVLDLTQKNSYTQRVNDADDARDKPIRGFFGVVAGMLHHFNPAVAQAAYN
                     VNLINENFSNITRLSDDKQTQAFDSYIAAIDAASADIVTLKLTDWVVEMKATHAAFLE
                     VVKSRNTEKDDKPNINMKQARMDTEAAYNALVDRINAFITIDGDALFTPLVTKINGRI
                     DQYNTSIAQRKGRAKKEVAVKADVNQ"
     gene            5682..6134
                     /locus_tag="VI413_05730"
     CDS             5682..6134
                     /locus_tag="VI413_05730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009122538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEY6914158.1"
                     /translation="MSQSLSKLYIHAIFHVKNNECLILPEDEKEIYAYIGGTIKISKS
                     IPIIINGTDNHIHVLCIMSKNVSLAGLLEDIKTNSSRWIKTLGPHYREFAWQGGYAGY
                     SVSQSKVQVVENYIRMQKEHHQKQTFQEEYVQFLKENGVDYNEDYLWT"
     gene            6519..>6772
                     /locus_tag="VI413_05735"
     CDS             6519..>6772
                     /locus_tag="VI413_05735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914159.1"
                     /translation="MKKNIRIAIASLIFVTTCFGQTGTAQNQISLRTQTDSLNYTLGV
                     ANGNGIKNYYFQNKSLEECIGVFMKSLDAAFAADKQLVKP"
BASE COUNT         2278 a         1402 c         1319 g         1773 t
ORIGIN      
        1 gaaaaggaaa agaaaaaata atctgtcagc aacatacaga agcagccggt tgaaaattga
       61 tttcaaccgg ctgcttgcgt ttttaagtac tatttagaat tgtcaactct cttgaaaata
      121 agccttcaag aaataaacga aaaaagaatt aacgatttac attctaaata ttgtacatac
      181 aaaataattt tcccaccttt gcagcattgt taattcacgg tttatttaag aggattatca
      241 ataataattt atagataaag ataataaaag tatggaaaaa agaacgttct atttgatttt
      301 gctctttcaa ttggtattga atatgagttt tatttccggc cagcaagctt atcagaatgg
      361 ttggaacgct ttcatgaaaa atgaccgcac agaagctcga aagtatttca ctcaggctat
      421 ttctgatccg gcttccgggc ccgaagcatt aataagtctc agtttactgg actggaatga
      481 aaacaagctt gatgctgctt ttcaaaactt tcagaaattc tacgaaacat cgcccaaccc
      541 atatccatat ctttatgcaa tgagtgcact tccattcatg tttgagcaaa ataacaggct
      601 tgaaccggag aagttggctt tttttgagaa aatttcgaac gattctaaaa tgaacggaac
      661 tcttaaagca atgattattg ctcagttagg ctcacattac gaaagttcga ataatgctaa
      721 aaaagctgca gagtattatg ctaaaatggg tgcattaaac cgttggcaag tgctcggaag
      781 ttttgacaac acctcgggta gcggcttctc caaagactgg ggagcagttt caaaaccgac
      841 tcaaacagct acttttaaaa ataaagcaga tgcaaatgta agttggtatt cacctggata
      901 taacaatgta aacaactggt ttcatttcga ttattatttt tacttaacca atgctattat
      961 gtatgcgcaa acttttgtca acagcgctat tgaccaggag gtgtatctgc gtgcaggcac
     1021 ttcgggctca cttaaaatgt gggtaaacga tgcgttagtt tcgtcagttc ccgaagagcg
     1081 aaactgcgat ttggacattt acagctataa ggtaaaacta aataagggaa ataaccgcat
     1141 tctggtgcaa ataggactaa gcgaaattga gcgggcgaac ttcctgataa gaattacgga
     1201 cgaaaacgcc aacccattag caaatataac cagctcccct gaatacgcag attacacaaa
     1261 atcaagcgaa aaattttcgt gcgaacaatt accatttttt gccgaagaat attttagcag
     1321 taaaattgaa agttcaaaaa acaatccgct gaattatttt ttgttagcag aaacatactt
     1381 acggaatgac aaatcgtacg atgccacaaa gactttgaga aaccttgaag ccagcgccgg
     1441 taaatcaacc ctgagttcat accggctgta cgaagcttac atacgggcac aaaaccaaac
     1501 ggattatgaa aaagaaatgg aaacaatcaa aagcagcgat ccaaattcgt acataagcct
     1561 gcaaacaaag tacactgaag ctgtgaaggc ggaaaagtat accgaagccg tagatatttg
     1621 caaaaaagta aaggaactat atggcgagag cccggtaact gacgaatggg aaattaacct
     1681 ggcttcctat gagaaacggt ttgatgatgt aattgcgatg gcaaaaaaac tatacaagaa
     1741 atatcctgag aacaacgact acatgcaaat caattatgtg attgaaaaaa atgtttcaaa
     1801 aaatccaaag ggtgctatct taattttaga agactattta aaaaaccaca acaattctga
     1861 ggtagtggat ttactttcaa aatcgtatct tgaattgggc aatacagaaa aaggactggc
     1921 tgtgctttac aaaagactgg agagcaaacc ttatgcaaca ggctattacg aaaatcttat
     1981 ttcagttctg tttggcatgc aaaaatacga tcaggcactg gctttatcgg aaaaagcatt
     2041 gaatctggct ccattcctac ccaatttata tacaacacgg gggtatatct acaaaaatgc
     2101 taatcagccg gaaaaagcga aagaaaattt tgaaaaatcc atttactttg gacctacaag
     2161 ctacgattcc agaacacaat taaggttgct cgcaaacaaa aaagaagtat atgaactttt
     2221 ccctaaaaat aaattgcagg atttgattgc caatgcccca aaaagtaaag attatcccga
     2281 agacaattcg tttattcttc ttaacgattt ccaacaagtc atttaccctg aaggagccaa
     2341 ggaatatcat cgcgaactgg caactaaaat actgaaccag tcgggaattg agacgtggaa
     2401 agagtatact atcggctaca acagctacaa ccagaaactg attattgaca aagccgaagt
     2461 gcttaaagcc aatggtagca ctgtaaaagc agaaaccgac aacaataacc agatcgtttt
     2521 caccaacctg gaagtgaatg atgtgcttca tttggaatat cgcatccagg atctgtctac
     2581 gggtaagctg gccagccatt tcttcgacca cttccagttc cagtattcaa ttccttcagg
     2641 cgtttgccga tacagcatac tgattcccga agataaaaag ttcaattatc tggttacaaa
     2701 cggaaatatt gaaccggtga ttacaaccgt tgaaaacatg aaactttaca aatgggaact
     2761 aaacaaccaa cctgccgtga aagatgaacc tcacatgagc gctctgggag atgtggcacc
     2821 cacattgtat tacagcagca tgcccgactg gaaattcgtc agcgattggt acaaggatct
     2881 taccaccagt aaattcaatt cggattttgt attgaaagaa actgtgaacg gattgctgaa
     2941 cggaaaagaa aacctgagca aactggaaaa agccaagatt ttctacaatt atatcctcga
     3001 gaatatcacc tactccagcg tggacttcct gcaaagcaat tacatcccgc aaaaagcgtc
     3061 gcggaccatc accacgcgcc tgggcgattg caaggatttg tcgacactct ttgtggcatt
     3121 gtgccgcgaa gttggaatta atgccaacct ggtgctaatt tccacccgca acaatgggaa
     3181 tcatacactc gtattgccgg gcattggctt caaccactgt attgcccaat tgaatatcga
     3241 caagcagaaa tattatctcg aacttactga caataccctg ccatttggtt cggcattgaa
     3301 agcagatttg aattcggaaa ttctgcctat cccctattcc gacgaacaat ttggcgacaa
     3361 actgctgacg ttggaaatgc ccgccagaaa atcgaactgc tcggtacgta accataaaat
     3421 cagcttctcg aaaaacgata tgaccattga acgccaactg atttgctatg gagctatggc
     3481 ttcgtaccaa cgtaacgatt tcaaaaacat aggcgccgac gaacagttga aacaaatgaa
     3541 cgaagctgtt gcaaaagaat ttgaagtatc caccaaagta agcaatctga acttcaggga
     3601 gctcgacaac ctggccgaca gtgtggttgt gaattacaaa gtagatgtga aaaatgccat
     3661 gcaggatgtg gctggcatga aaattctccg tctgccatgg accgatacta attcacttga
     3721 cattgttgct gccgaagaca ggaagttccc gtttgaatac tggtcgtacc aaaccgagga
     3781 taaaaccacc gaaaaaatgg ttattgaact tcaacaaggt aaaaagctgg tggaagtgcc
     3841 tcaaaacatg aacttcgact gccctactgc cacttacagt cttaaattcg acaccaacac
     3901 accgggcaaa gtcattgtta cccgccactt cgaacgcaaa gcagaccaaa ttacgactaa
     3961 agattatccg gccttccgcg aatttctgaa caaagtaagc gaagctgaca gcaaacagta
     4021 cgcaattaaa tagccctttg tagacttttt taactaaacc cgactggatc tcgcatgaga
     4081 ttcagccggg ttctttcgtt ataatgcgtt ttgcatcaag tcatattatt aacctgcata
     4141 ctgttgataa ctttatttag aaaaaattca cccaccctat tttttatata aaatattaca
     4201 tatctttgac ccgttaattt ttaagaaaca atcgttttct ctaaccggaa cacttacttt
     4261 caaaagattc aacagattgt caccgaccgg tgaaagtgat tcacaagcgt gtaaaaccct
     4321 ttcacaacat ggcgaaaggg tttttcagtc ctgtagagca cattcgccgg gtggcggaag
     4381 catttttcac cgattttgac cctttcgcca acttgcaaag gtgtttttca tgcatttttg
     4441 acctgtcgcc aacccgcgac acaatttttc aggcatgaac aggcaaatcg caaccctgcg
     4501 acagggtact tatactgttt cttactgtat ctccaacata agattattgt tcttaacctt
     4561 tttatcaact atttaatttg atctttatgc taataaaaaa cattcatttg aatgcgctgc
     4621 aaaatgaaga acatgcgggt tatcatacct acgtgtctga gtaccttacc gaagatgaca
     4681 atgccaattc aaaagttcag gtgcaattgt ccgattacaa attgaaactg ggcattgaga
     4741 aatcggtgct ggacctgact cagaaaaaca gttacaccca gcgggtgaat gatgccgacg
     4801 atgcccgcga taaacccatc cgtggtttct ttggcgtggt ggcaggcatg ttgcaccact
     4861 tcaacccggc tgtggcgcag gcagcgtata acgtaaacct gattaatgaa aatttcagta
     4921 acatcacgcg cctttcggac gataaacaga cgcaggcttt cgacagctac atagctgcta
     4981 ttgatgctgc ctctgccgac attgtcacgc tgaaactcac agactgggtg gtagaaatga
     5041 aagcgaccca tgctgctttt ttggaagtgg tgaaaagccg caataccgag aaagacgaca
     5101 aaccaaacat caacatgaaa caggcacgga tggacacgga ggctgcctac aatgcactcg
     5161 tggaccgtat taatgccttt atcactatcg atggtgacgc actgtttacc ccgctggtaa
     5221 ccaaaatcaa cggacgtatt gaccaataca acacttccat tgcccaacgc aaaggccggg
     5281 cgaaaaagga agttgcggta aaagcggacg ttaatcaata atctatcaaa ccccacccca
     5341 atgtgctggt agagcggcgg ggtgggtgat tatttgggct gaaagcctta aacaacctag
     5401 cccaatggca aagccacagc gtggcgacgc cttgggttaa aaacgaacaa acaaatgtac
     5461 gccctgtaag ggcaacataa aaatgaatca ttcaaattct caatatcatt gcatgaatta
     5521 ttatattggg cttacagccc gagaaaaaat acccaattat attttcccaa cgtatcgcct
     5581 atacccaatg cgcggccatt acatggcttt acattggact atgatataat ggactttcag
     5641 cccaaaagaa agcatacgat ctaattttaa acaataccaa tatgtcacaa tcattgtcga
     5701 aattatatat tcatgccatt ttccatgtaa aaaataacga atgtttgatt cttcctgaag
     5761 atgaaaaaga aatatacgca tacattggcg ggacaataaa aatatccaaa tccattccca
     5821 ttattataaa tggcacggat aatcatattc acgtgttatg cattatgtcg aaaaacgttt
     5881 cgttagccgg tttattggaa gacataaaaa ccaatagtag tcgttggatt aaaacattag
     5941 ggccgcatta tcgtgagttt gcgtggcaag gtggttatgc cggatattca gttagtcaat
     6001 cgaaagttca ggtcgttgaa aattatattc ggatgcaaaa ggaacaccat caaaagcaaa
     6061 catttcagga agaatatgtt caatttttga aagaaaacgg ggtggattat aacgaggatt
     6121 atttgtggac ataacctata ctgccccttc ggggcgcaat tttgtattta tcaatcatcc
     6181 caacgcgtcg ccatttcatg gctttacgtt gggctaggat atacagggct ttcagcccgg
     6241 aataaaataa accacaactg aacctctttt cagaaattca tccatttttt ttttattcac
     6301 cgggtgattc tgctgaaaaa aatatcaatt tcctcctgct ttagctggag gaaaaagaat
     6361 ggatcattaa aagggcttta gccaaaaagc aaaatctgtt tggctaaagc caattcaata
     6421 ttttcattgt cctccagcta aagcaggagg caattcaggt ggcaattaat gccggaatac
     6481 aagaaactta atttcaaaac atttaataca atatcaccat gaaaaaaaac attagaattg
     6541 caattgcttc tttgattttt gttacaactt gttttggaca gactggaaca gcgcaaaatc
     6601 agatttcact tcgcacacaa actgacagtt taaactacac actgggagtt gcaaatggaa
     6661 acggcataaa aaactattat ttccaaaata aatcgctgga agaatgcatt ggtgttttta
     6721 tgaaatctct ggatgcagcc tttgcagccg acaagcaatt ggtaaagcct ga
//
LOCUS       DATDNM010000344         4835 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1219656, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000344 DATDNM010000000
VERSION     DATDNM010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4835
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1219656"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            203..1798
                     /locus_tag="VI413_05740"
     CDS             203..1798
                     /locus_tag="VI413_05740"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6914160.1"
                     /translation="MKKKNFCYIFIAVVLTMVSLASCNDVWESHYNDSTIVNKSSLNL
                     YEYIKTQPDLSIFTQMLQITGYDSILSKPQTYTVWAPVNNALQGINMSDTAVITEIVQ
                     NHISRFSYPTSGLSSKIIYMLDKKFISFSRGDNGFTFGGKLLLNTKSNVAASNGILHQ
                     IDGYVPYLTNIWEFIGKADGLDSVRAYLYSQSVYEFDPKASVEIGTNEFGQSIYDSII
                     TFSNPVLSKIGFLHVEDSTYTALLPNNAAWIKAYNRIKPNYKTLDKDGGATQQRLNTQ
                     YAIVNNLIFRKLVTDPGSVEPLISTTGSVFTTPAYLFEGSTKSVLSNGLVYTTDSIRF
                     KAADSYQQKIKVEAENSSYGRASRYASLSVLSSKGSSLSDSVSGSKYLVVYPTTVSNN
                     SQNSVTFPLPNVLSGKYNIYCVFVPASVITPGDTKANKVKFFFNHLDATGKQAIDTVV
                     TVANKLVTTAGSAGIFATYPSMMTKVFVTQFTFPFCNLYGENSTNASIVNKLRVENVV
                     KITETVLFDRTMRIDYIVLEPAQ"
     gene            1823..>4835
                     /locus_tag="VI413_05745"
     CDS             1823..>4835
                     /locus_tag="VI413_05745"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6914161.1"
                     /translation="MNMKIDKYILDMNRMLSGIRYLGTLFLIVMFLSAQGVQAQGSPA
                     KIVVKGLVRDAHSKKPVIAAQISILNSKKTTSTDDKGTFSIEVPSLQTLLHVGAYDYN
                     VREYPIQGKDSVVINLYPEVFSNYYKNIEGLNGVVDNSTSVNSVVGISEKNQSHAFTA
                     DEALQTEAGGDVRAISRSAVTGEGASLFIRGLNSLNANAQPLFVVDGVIWNSLYDVTS
                     IHQGFSLNPLCNIESNDIASITVMKDGTSLYGSKGANGVVLIKTKRGTGMATKINLNI
                     VTGITTAPNTIPVMGVNDYKTYVTEMLGSSGLSNNEISQLPYLNDNQARSTYKIYHNN
                     TDWPHEIYRTAVNKTYSINVQGGDDKAIYYFSLGYTGNDGVVKTTNFQRYNMRLNADV
                     KLAEIVNLGLNVGFARIDRKLVDDGVNNYTSPTWLSLVKSPFLSPNTFTFMGERTTEY
                     AYTDVFGIGNPPAIINFSNNTVKQNNFNVGLKPEVKITPDMTLSENFDYSLNKVNEDS
                     YRPYLYSTPIFIQGIGYSYNSRQSQVLRNNSVFSDTRLTYKKKLDDKTLIDAFIGTRY
                     LVNNFESDFVEGHNSLSNSSINLVGGFKNLYTTGVNDMTKSLSHYVSVDLNTDNRFML
                     NLTTSMDASSRFGNETKGGISIFGHSFGVFPSANAAWLASSEKFMKYVPAINLLKFRA
                     GVGITGNDDIKDYQTLAYFSSVRLKGVANGMVISGLANPTIEWETTARLNFGMDLGLL
                     NERLLLSVDLFSAATGNLLVLKQYQDISGLNSYWTNSGMLGNKGAEVSLNAKVLNLKD
                     FHWELGMSAGHYVNTILELPNGSYTTKVYDGEVLTAVGNSAGVFYGYKTNGVFASEAA
                     ATAANLRLQNSNGSFSAFGAGDVIFEDKNGDGIIDENDKQVIGNPNPVLYGTFTNKFS
                     YKNFLLTALFTYSYGNDVYNYQRSQLESGKDFGNQTTAMVTRWTSENQITKQPKALYG
                     DPMGNSRFSDRWIEDGSYIRMKSLTLSYSLPI"
BASE COUNT         1508 a          870 c         1016 g         1441 t
ORIGIN      
        1 ttagaatgct ggaatccaaa ataaaattga taaataaatt taaggtataa aacaagtctc
       61 tgactttcgg aacgtgttct ttatggcctt aaaaaaataa attatttacg tttgaaatga
      121 gcatgaatat gagtattcac caacgaccgt gaaaatctga catgcaagtt ccatgcgaca
      181 actatttaaa aattacttac gcatgaaaaa gaaaaatttt tgctatatat ttattgcagt
      241 cgtacttacg atggtatctc ttgcgtcgtg caacgatgtg tgggaaagcc attataacga
      301 cagtaccatt gtaaataaaa gcagtttaaa tctgtatgaa tatataaaaa cacaacctga
      361 tctgagtatt tttacccaaa tgcttcagat taccggttat gattccatat tgagcaaacc
      421 gcagacttat actgtttggg caccggtaaa taatgccttg cagggcatta atatgagcga
      481 tactgccgtt ataacagaga tagtgcagaa ccatatcagc cggttttcat atccaacatc
      541 ggggttgagt tccaagatta tttatatgct tgataagaaa tttatcagtt ttagcagagg
      601 tgacaacggc tttacttttg gcgggaaatt acttcttaat acaaaatcga atgtggctgc
      661 atctaatggt attttacacc agatcgatgg ctatgtacct tacctgacta atatctggga
      721 gtttatcgga aaagcagatg gtttggattc ggttcgtgcc tatttgtatt ctcaaagtgt
      781 gtacgagttc gacccgaaag ccagtgttga aatcggaacg aatgaattcg gacagtccat
      841 ctatgattca attattacat tctcgaaccc ggtgttgtcc aaaattggat ttttacacgt
      901 tgaagacagc acttacacgg ctttgttacc aaataatgca gcctggatta aagcttataa
      961 cagaatcaaa cctaattata aaacgctgga taaagacggt ggtgcaaccc aacaacgatt
     1021 gaatacgcaa tatgcgatag tgaataatct gatttttagg aagctggtta cagatccagg
     1081 atcagtcgaa ccgttgattt caactacagg gagtgttttc acaacgccgg cttacttatt
     1141 cgaaggttca accaaatcag tacttagtaa cggcttggtt tatacaacag actctatacg
     1201 ctttaaagcg gccgattcat accagcaaaa aatcaaggtt gaagccgaaa actcaagtta
     1261 cggcagagct tcgcgttatg ccagcttgtc agttctttcc agtaaaggct cttctttaag
     1321 cgattcggtt tccggaagca agtatctggt tgtttatcca actacagtaa gtaacaattc
     1381 tcagaattct gttacatttc cactccctaa tgtcctgtcc gggaaataca atatttattg
     1441 tgtgtttgtg ccagccagcg tcataactcc gggtgacaca aaagccaata aagtgaaatt
     1501 cttttttaat cacttggatg caaccggaaa acaagcaatt gatactgttg tgaccgttgc
     1561 caataaactt gtcactacag ctggttctgc cggaatattt gcaacgtacc catcaatgat
     1621 gaccaaagta tttgtgactc aattcacatt cccattttgc aatttgtatg gtgaaaattc
     1681 gacgaacgca agtattgtaa ataagttgag agtggagaat gttgtgaaaa taactgaaac
     1741 tgttttgttt gaccgtacca tgcgaattga ttatatcgtt ttggaacctg ctcaataaat
     1801 aattgtacaa taagtaatca gaatgaatat gaaaattgat aaatatatat tagatatgaa
     1861 caggatgctt tccggtataa gatatttagg cactttattc cttatagtga tgtttctgtc
     1921 ggctcaggga gttcaggctc agggcagccc ggctaaaata gttgtaaagg ggctggtgcg
     1981 ggatgcgcat tccaaaaaac cggtaattgc ggcacaaatt agtattttaa acagtaagaa
     2041 aacaacttca actgacgaca aaggaacttt cagcattgaa gttccgtcgc tgcaaacatt
     2101 gcttcatgtt ggtgcatacg attacaatgt ccgcgaatat ccgattcagg gaaaagattc
     2161 agttgttatt aatctttatc ccgaggtatt cagcaattat tataagaata tcgaagggtt
     2221 gaacggtgta gttgacaatt caacttcagt gaactctgtg gttggtatta gcgaaaaaaa
     2281 tcaatcacat gcttttaccg ctgatgaagc attgcaaacc gaagcaggag gtgatgtccg
     2341 tgctatttca cgctcggcag tcactggtga aggcgcttca ttattcattc gcgggttgaa
     2401 ctcgctcaac gccaacgcac aaccattgtt tgtggtggat ggcgttatat ggaacagttt
     2461 gtatgacgtc acttccattc atcagggctt ttcgcttaat ccgctttgca atattgaaag
     2521 caacgatatt gcaagtatta ccgtgatgaa agatggaacc tcactttatg gaagcaaagg
     2581 tgcaaacggt gtggttttga ttaagacaaa acgtggtaca ggcatggcaa ccaaaattaa
     2641 cctgaacatt gtgacgggta taacaactgc gccaaacaca attccggtga tgggtgtaaa
     2701 cgattataaa acctatgtta ctgaaatgtt gggatcgtca ggtttgtcaa acaatgagat
     2761 ttcacaattg ccttatctga atgacaatca ggcccgctct acctataaaa tttatcataa
     2821 taataccgat tggccacacg aaatttacag gactgcggtt aataaaacgt attcaattaa
     2881 tgttcaggga ggtgatgata aggctattta ttatttttcg ttaggttata cagggaatga
     2941 tggagtagtt aaaactacta atttccaacg ttacaacatg cgtttgaatg cagatgtgaa
     3001 acttgcagaa attgtaaacc taggactaaa tgttggtttc gcgcgcattg accggaagct
     3061 ggtggacgat ggcgtgaata attacacttc acctacctgg ttaagcctag ttaagtcacc
     3121 ttttttgagt ccgaatacat tcacttttat gggtgaaaga acaacggaat acgcttatac
     3181 tgatgttttt ggcattggaa acccaccggc aattatcaac ttttcaaata ataccgtgaa
     3241 gcaaaataac ttcaacgtag ggttaaagcc agaagtgaaa attacaccgg atatgactct
     3301 tagtgagaat tttgattaca gtctgaataa agtgaacgag gacagttacc gtccgtacct
     3361 gtattcaact ccgattttta tccaaggtat cggttattcc tacaatagca ggcaaagtca
     3421 ggtgttgcgc aataattcag ttttcagtga tacgcgtttg acatacaaaa agaaactgga
     3481 tgataaaacc ctgatagatg cttttatcgg aacgcgttat ctggtaaata attttgagtc
     3541 ggattttgtt gaaggacata attcactttc caactcttca atcaatctgg taggaggttt
     3601 taagaattta tacacaacag gtgttaatga tatgacaaaa tctttgtcgc attatgtgag
     3661 tgtggatctt aacactgata atcggtttat gctgaacctg accacttcga tggatgcatc
     3721 ttcaaggttt ggaaatgaaa caaaaggagg tatttccatt ttcggacata gttttggagt
     3781 ttttccttct gcaaatgctg cctggttagc cagctcggaa aaattcatga aatatgttcc
     3841 tgcaattaat ttgctcaaat tcagggccgg agttggcatt acagggaatg atgatattaa
     3901 ggattatcaa acattggctt acttctcttc ggtaagattg aaaggagttg ccaatggaat
     3961 ggttatttcc ggtttagcaa atccaacaat agaatgggaa actacagcca ggctgaattt
     4021 tggaatggac ctgggcttac tcaacgaacg cttgttgttg tcagttgatt tgttttcggc
     4081 agcaacaggt aatttgttag tgttgaaaca atatcaggat atttcagggt tgaactctta
     4141 ctggacaaac tctggaatgt tgggaaacaa aggcgcagaa gtttcgctca atgcaaaagt
     4201 gttgaattta aaggatttcc attgggaatt gggaatgagt gccggtcatt atgtgaacac
     4261 aattcttgaa ttgccaaacg gttcgtatac taccaaagtg tatgatggtg aggtgttgac
     4321 agcggttggt aattctgccg gagtatttta cggatacaaa acaaatggtg tttttgcttc
     4381 ggaagctgct gcaacagctg ctaacctgag gctgcaaaac agcaacggtt ctttttctgc
     4441 attcggagca ggtgatgtga ttttcgaaga caaaaatgga gatggaatta ttgatgaaaa
     4501 tgacaaacag gtaatcggaa atcctaatcc cgttctttat ggaactttta ccaataaatt
     4561 ttcatacaaa aactttttgt tgaccgcatt atttacatat tcttacggca acgatgtcta
     4621 taattatcaa cgcagtcagc ttgagtcggg caaagatttc ggcaatcaga ccactgccat
     4681 ggttacccgg tggacaagtg aaaaccaaat aactaagcaa cccaaagcac tttatggaga
     4741 cccaatggga aattcgcgtt tttccgatcg ttggatcgaa gatggttcat acattcgaat
     4801 gaaatcatta accttgtcat acagccttcc gatta
//
LOCUS       DATDNM010000345         2784 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1646256, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000345 DATDNM010000000
VERSION     DATDNM010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1646256"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(351..1280)
                     /locus_tag="VI413_05750"
     CDS             complement(351..1280)
                     /locus_tag="VI413_05750"
                     /EC_number="1.8.4.11"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methionine sulfoxide reductase B/A
                     protein"
                     /protein_id="HEY6914162.1"
                     /translation="MKFAFILISLLSLFGQASCQQNNTKKNMNYNKLTPQEEAVILHK
                     ATERPFTGEYVDNKVQGTYVCRQCNAPLYRSEDKFDSHCGWPSFDDEIPGAVKRIPDA
                     DGRRTEIVCANCGGHLGHVFLGEGFTQKNTRHCVNSISMKFIPTKNKNMEKAFFASGC
                     FWGTEYHFMKAKGVIETTVGYMGGHTQKPTYKEVCTGETGHVETTEVDFDTTQTSYED
                     MLKLYFETHDFTQVGGQGPDIGDQYRSVIFYTSDEQKKLAEKYIGILTAKGYKVATIL
                     EKAPQFWPAEDYHQEYYDKKHGTPYCHIYRKIF"
     gene            complement(1472..2098)
                     /locus_tag="VI413_05755"
     CDS             complement(1472..2098)
                     /locus_tag="VI413_05755"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6914163.1"
                     /translation="MFGPKIWDFYAGWYDRLWVQKFVLSPSRHLILKTINELPSPGMI
                     LDVGCGIGELCQLISIQYPNAEIVGIDPSSKMIKRAARNFSAKNINYVCGHHDSLPSG
                     QQFDVIVSTNAFPYIPDKNKFLKDIKKQLKTNGRLLLLFANQNNWYDAFWLKIVKLTT
                     SRAQYLSVSDTQSLLKSNGFEIGKTEPIDSLFFIPSVFMVEGIFIDPT"
     gene            complement(2102..>2784)
                     /locus_tag="VI413_05760"
     CDS             complement(2102..>2784)
                     /locus_tag="VI413_05760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914164.1"
                     /translation="ENIFIVDDTFLTGAKRLEAFCDELEKRNIRKKFIAYGTAHFISA
                     HPDLLARLKKNGLSALIVGFEYINDAGLKAVGKDASTANNDHTIALCRQLDIELFALF
                     ITDINWKHADFQQLASYIRKKKIRFATFSTPTIFPKTDMAIQQNTIFNIKLLWRYDLL
                     RLHEKPVHISAVSYYLWLFLLYMIPAMSFSSLRHFLTRFGFWRGIRAIAESSFFGIIY
                     FLKLLIWR"
BASE COUNT          861 a          572 c          502 g          849 t
ORIGIN      
        1 atgcacattc actgatacct ggctttgtac agcacctgca agcatcaaca ataatccaaa
       61 tgcgagtact ttaaaagttt tcatttttgt tttttttatg tgtattaatt cctactgcac
      121 aaaggtgagg ttattaagca gccaaagcgt tacataattt tcatgaagag ttacaaaatt
      181 cacactgttt tattgattat tgataaatta taaaaaataa gttgaaaaat acaaatcaga
      241 tttagtctaa agaacacaca aaaaacgcct tacatttttc atgtaagacg tttttttaga
      301 tcaaaatatt gatttataat ctctctttct ttagtagcta tggaccataa tcagaatatt
      361 ttcctgtaaa tgtggcaata cggagtgccg tgttttttgt cgtaatattc ctgatggtaa
      421 tcttctgcag gccagaactg aggcgctttt tcgaggatag tagctacctt ataacctttt
      481 gcagtaagga ttccgatata cttttcagcc agtttctttt gctcgtccga agtgtagaaa
      541 attacggaac ggtactggtc accaatatca ggcccctgcc ctcctacctg cgtaaaatcg
      601 tgcgtttcaa agtacagttt caacatgtct tcgtacgaag tctgcgttgt atcaaaatca
      661 acttcggtgg tttcaacatg tccggtttcg cccgtacaaa cttctttgta agtcggtttt
      721 tgggtatgtc cgcccatata acccactgta gtttctatca ctcctttggc tttcataaag
      781 tgatattcgg tgccccagaa acatcctgaa gcaaaaaaag ctttctccat atttttattt
      841 ttagtaggaa taaatttcat tgaaattgag ttcacacaat gccgcgtatt tttctgcgta
      901 aacccctcgc ccagaaaaac atgccccaaa tgtcctccac agttggcaca aacaatttcg
      961 gtgcgccgcc catcggcatc gggaatgcgt ttcacggctc ccggaatttc atcgtcgaaa
     1021 ctcggccagc cgcaatgcga gtcgaactta tcttcggaac ggtataacgg tgcattacat
     1081 tgccggcaca cgtacgttcc ctgcactttg ttatctacat attcgcctgt aaacggcctt
     1141 tcagtggctt tatgaagaat tacagcttct tcctgcggag tcagtttatt gtagttcata
     1201 ttctttttag tattgttttg ctgacaactt gcctgaccaa acaaggaaag caaactgatc
     1261 agaataaatg caaatttcat gttcattgat tggtaattgt tttgttatac gattgaataa
     1321 aacagataat taccaaaatt tgttcagcac ccaaagagta tggtaacaga tagctgatcc
     1381 gggaaatttt tcattttaca aaggtaagaa caatcaatta atttctctat aaaaaacttt
     1441 ctgaagctat atctgaatcc agaatattta ttcaagtcgg atcaataaaa ataccttcta
     1501 ccataaacac cgatggaata aaaaacagac tatcgattgg ttctgtttta ccaatttcaa
     1561 aaccattgga tttcaggagg ctttgcgtat cagaaacaga aagatattgc gccctggaag
     1621 tcgtcaattt cactattttc aaccaaaagg catcatacca gttattttgg ttggcaaaca
     1681 aaagaagcag ccttccattc gttttcaact gctttttaat atccttcagg aatttatttt
     1741 tgtcaggtat atacggaaag gcatttgttg aaacaatcac atcaaactgc tgaccggaag
     1801 gtaaactatc atgatggcca caaacataat tgatgttttt agccgaaaaa ttcctcgccg
     1861 cccgtttaat catctttgac gaaggatcta taccaacaat ctctgcattt ggatattgaa
     1921 tgctaatcaa ctgacaaagt tcaccaatac cacaccctac atcaagtatc attcccggtg
     1981 atggcaattc atttattgtt ttaagaatca gatgacggga aggtgacagc acaaatttct
     2041 gcacccaaag ccggtcgtac cagcctgcat aaaaatccca aatttttggt ccaaacatat
     2101 gttatctcca gattagaagt ttcaaaaaat aaatgattcc gaaaaaggaa ctttcggcaa
     2161 ttgcccgtat gcctctccaa aaaccaaaac gtgtgagaaa atgcctcagc gacgaaaaac
     2221 tcatggcggg aatcatatac agtaaaaaaa gccacagata atatgaaacg gctgatatat
     2281 gcaccggttt ttcgtgcagc cgaagcaaat catatcgcca caaaagttta atattaaaaa
     2341 tagtgttttg ctgaatggcc atatccgttt ttgggaaaat agtaggcgta gaaaaagtag
     2401 caaaccggat tttctttttc cggatatagc ttgccagttg ctggaaatcg gcatgtttcc
     2461 agttgatgtc ggtaatgaaa agcgcaaaca gttcgatgtc cagttgccgg caaagagcaa
     2521 tggtatggtc gttattggct gttgaagcgt ctttaccaac tgctttcagg cctgcatcat
     2581 taatatattc aaaaccaaca attagcgccg acaatccgtt ctttttcagg cgtgcaagta
     2641 aatccggatg agccgaaata aaatgagccg ttccgtaggc aataaacttt ttacggatat
     2701 tgcgtttttc aagttcgtca caaaatgcct ctagccgttt tgcaccagta agaaacgtat
     2761 cgtctacaat aaagatattt tcag
//
LOCUS       DATDNM010000346         3313 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_578472, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000346 DATDNM010000000
VERSION     DATDNM010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3313
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578472"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1553)
                     /locus_tag="VI413_05765"
     CDS             complement(<1..1553)
                     /locus_tag="VI413_05765"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6914165.1"
                     /translation="MKKITLLLFLALNLVASAQTWTNPLTLSGEWFQYGIGDPYILKY
                     RGTYYLYCSTKDNNTGIKCWSTKDFVTWSGAITCSTDPITKSAYAPEVVYWNGTFYMY
                     TSPAGGGHYVLSSTSPTGPFTVVTGNVGKSIDGSVFINDDGSWYFYHADGNGIMGCPM
                     TNPTTIGADINMNARMGNNWTEGPTVIKRNGVYYLIYTGNHVISKGYRIDYAKNSAGP
                     VSSYTPQAAQNPILIKTEGSFVGLGHGSAFIGPDLDSYFYCYHNLAGDYGVGPYRRLN
                     FDRIAWNGDKLLLLGPTTWAQQSHQKADMSDFFQRSEIGTDWTMPNGGNWSLVSSDYM
                     MQDISNETSESWHKALYSKPTAENYTAEFTLKEEHRDNNAARFGAVFGYTDEQNYGIA
                     VLHSFTNQLEVNFLINNVWGTAQYYTLPTGYNYNAWHSIRIEKWGVTYKFFVDGMLKS
                     SLISNLGAGKVGYMSSWSHADFGYIAFSNKVNGSGIFEVYKPVPGSIDAVHYNPGGQG
                     VGYSDLTPG"
     gene            1802..>3313
                     /locus_tag="VI413_05770"
     CDS             1802..>3313
                     /locus_tag="VI413_05770"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6914166.1"
                     /translation="MKKRYLICLLLVFFFVGAKALAFSFRHYKVENGLSENSVFCSLQ
                     DSKGYMWFGTKDGLNRFDGQTFRVFRHIPNDKKSIGNSFIHTLYEGKDKMLWVGTDKG
                     IYKYNHLLNTFQYFDTKTDSGQLIDQSVYCITEDRAGNMWVASTVGLFFYDKKSRKLK
                     LYTHDERIPTSLSATNVNSVFCDSEGTIWAGTIDGGLSRYNARKDNFTNYAFTPSNGT
                     YRVSVLKIREDSQGNLVLGTITEGLIFFDQKTGKSVQCPLGPTSDQIYYFRDVFEYSP
                     GVYLAASEYGLLMYEKATGKTTQIKSSTIVANSLSDNAVYSISKDREGGIWVGTYFGG
                     VNYIAPKPKAFELYTPLEYKNSISGKAVSQFCEDPSGNMWIATEDGGLNYFNLKNNTF
                     KSYNHVPGQNSISYSNVHSLQFDGDNLWIGTFARGLNILNTKTGKFSFFSASHDIHTI
                     NDNNVFSIYKDLTGTIWVGTIGGLSKYNRGNNNFDRIEEPMAHAFIYDILQDNK"
BASE COUNT          984 a          718 c          688 g          923 t
ORIGIN      
        1 ttgcccggag tcaaatcaga gtaccctact ccttgcccac ctggattgta atgaaccgca
       61 tcaatgcttc cgggaacagg tttataaact tcaaaaatac ccgaaccatt cactttattg
      121 ctgaaagcga tatagccaaa gtcagcatgg ctccagcttg acatataacc cactttgcct
      181 gcacccaggt tactaatcaa agaagatttt agcataccat ccacaaaaaa tttatacgta
      241 actccccatt tttcgatgcg gatgctatgc catgcattat aattatatcc ggttggcaat
      301 gtgtaatatt gtgccgtgcc ccatacatta ttaatcagaa aattcacttc caactgattg
      361 gtgaaactgt gaagcacagc tattccatag ttttgttcat cggtataccc aaacacggca
      421 ccaaatcttg ccgcattatt atcgcggtgt tcttccttca atgtaaattc agcggtgtaa
      481 ttttcggctg ttggttttga ataaagggct ttatgccagc tttcagaggt ttcgtttgat
      541 atgtcttgca tcatataatc cgagcttaca aggctccagt taccaccgtt aggcatagtc
      601 cagtcagttc cgatttcgct gcgttggaaa aagtcagaca tatcggcttt ttgatgcgat
      661 tgttgtgccc aggtagttgg tccgagcagc aaaagtttat cgccattcca ggcaatacgg
      721 tcaaaattaa gcctgcggta cggaccaaca ccataatcgc cggccaggtt atgatagcag
      781 taaaagtagc tatccaggtc gggtccaata aaagcagagc catgtcccag gccaacaaat
      841 gagccttctg ttttaataag aatagggttt tgagcagctt gcggagtgta agaactaacc
      901 ggtcctgctg agtttttggc ataatcaatc cggtagcctt tgctgataac gtggtttccg
      961 gtataaatca gataataaac accgtttcgt ttgatcacag tcggaccttc cgtccagtta
     1021 ttacccatgc gggcattcat atttatatct gccccaatcg tagtcggatt agtcatcgga
     1081 caacccatta tcccgttacc gtcggcatga taaaaatacc agcttccatc gtcgtttata
     1141 aaaaccgagc catcaatgct ttttccaaca tttccggtaa caaccgtaaa aggcccggta
     1201 ggacttgtgc tcgaaaggac ataatgaccg ccgccggccg gtgaagtgta catatagaaa
     1261 gttccgttcc agtaaacgac ttcaggtgca taggccgatt ttgtgattgg atctgtgcta
     1321 cacgttatcg cacctgacca ggtgacgaaa tcttttgtcg accagcattt gataccggtg
     1381 ttgttatctt tggtactgca atacaaataa tacgtgccgc ggtacttcaa aatgtacggg
     1441 tcgccgatac catactgaaa ccattcaccc gaaagtgtca atggattggt ccatgtttgc
     1501 gcactggcaa caagatttaa tgcgagaaat agcaaaagtg tgattttctt cataaactta
     1561 tacttggttt gctgagagag taagtgtatg atgcaaattt aacctttata ttctcgtcag
     1621 aataacacaa acagcccatt ttatgctaca aaatatccaa atgaagacat ttcacaaggc
     1681 attatgcacg ctggttgcat ttgttgaaca aaacgttaca ttctattcta agtaaaatca
     1741 attatcttta ccctgaatta atttccagca ctatatctaa tcagaacagg aatacataca
     1801 gatgaaaaaa cggtatttaa tttgcttgtt gcttgtcttt tttttcgtgg gagcaaaagc
     1861 acttgctttt tcattccgtc attataaagt tgaaaacggc ttatcagaaa actccgtttt
     1921 ctgttcgttg caggacagta aaggctatat gtggtttggg accaaagatg gcctgaatcg
     1981 cttcgatggt cagaccttcc gggtattcag gcatatcccg aacgataaaa agtcgattgg
     2041 gaacagtttt atacacactc tctacgaagg caaggacaaa atgctttggg taggaacaga
     2101 taaaggaata tacaaataca atcatttgct gaatacgttt cagtacttcg acaccaaaac
     2161 agacagcggg caattaattg atcagtctgt ttattgcatt accgaagaca gggccggtaa
     2221 tatgtgggtt gcctccaccg taggtttatt tttctatgat aaaaaaagcc ggaaactgaa
     2281 actgtacacc cacgatgaac ggattccaac ctccctttca gctacaaatg taaatagtgt
     2341 gttttgcgat agtgaaggaa cgatatgggc cggaacaatt gatggaggat taagccgtta
     2401 taatgcccga aaggacaatt tcacaaacta tgcctttact ccgtccaatg gtacttacag
     2461 ggtaagtgta ttgaaaatca gggaagattc gcagggaaac ctggtattgg gaaccattac
     2521 cgaaggattg atttttttcg accagaaaac ggggaaaagc gtacaatgtc ccttgggacc
     2581 cacctccgat cagatttatt atttcagaga tgtattcgag tattcgcccg gtgtttatct
     2641 ggctgcatct gaatacggat tgctgatgta tgaaaaagct accggcaaaa ccactcaaat
     2701 aaagtcttcg accattgttg ccaattccct gagcgacaat gccgtttatt ccatcagcaa
     2761 agaccgtgaa ggcggcattt gggtagggac gtattttggc ggggtaaatt atattgcacc
     2821 caaaccaaaa gcatttgagt tgtatacccc gctggaatac aaaaattcaa tcagtggcaa
     2881 agcggtaagc cagttttgtg aggatccatc gggcaatatg tggattgcca ccgaagatgg
     2941 agggctcaat tatttcaatt tgaaaaacaa caccttcaaa agctataacc atgtgcccgg
     3001 acaaaacagc atttcgtaca gcaacgtgca ttcgctgcaa ttcgatggag ataacctgtg
     3061 gatcgggact tttgcccgtg gactcaatat tttaaataca aaaaccggga aattctcttt
     3121 tttctccgct tcgcatgata ttcacaccat aaacgataac aatgtttttt ccatttacaa
     3181 agacctgaca ggaacaatat gggtaggcac cattggcggc ctgagtaagt acaaccgggg
     3241 caacaacaac ttcgaccgga ttgaagaacc aatggcccat gcctttattt acgacattct
     3301 gcaagacaac aaa
//
LOCUS       DATDNM010000347         3571 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1967285, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000347 DATDNM010000000
VERSION     DATDNM010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3571
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1967285"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            345..>3571
                     /gene="ccsA"
                     /locus_tag="VI413_05775"
     CDS             345..>3571
                     /gene="ccsA"
                     /locus_tag="VI413_05775"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEY6914167.1"
                     /translation="MKKLNDILFSMVTTIVLLIIFAASIGYATFAENSSGTPYAREIV
                     YNAKWFELLLALLIVNLIGSILRFKMTNKRKLSVLLFHLSFIVILIGAGITRYFGSEG
                     MMHIREGETSNEITSEKSSVHIVAEYNGQKVERNFDATFGESESNEFSQKLEIGDKTI
                     TLESELFVPNSIETLEADEHGEPGLDVFVMNQSSHGQDIILTARERNESNGVAFAFAD
                     STVKADIHFTMDGEQLYMKANSPIAKMGMMESNEAMIHAGTLMPAQEKTIYKSGNLVF
                     VLKKFLTHSKKSLTQFTPDMNKMGVMIQPRNAIIFNVSDGTASKKINVLTAENEVSNP
                     GTCLLNDIKVSIEYGNLPQKLPFSITLRDFQLDRYPGSNSPSSYASEITLTDKETKTV
                     SPFRIYMNNILNYRGYRFFQSSYDNDEQGTVLSVNHDYWGTLVTYVGYLLMLIGMVLT
                     LFNKNSRFHKVIKLSNDLQQKHKAAKTLLLIGLLAGSASMFAAVNKNNSKDSHFKALS
                     SLLIQDEAQGRIEPISTYASDLIRKISKKTSYKNESSLEVLMGMCTNPEHWQNEPIIK
                     VAHDGLAKELGAEKDYVSFIQLFDIKNGGKYKLADKVDAIYQKDPSMRNQYEKELINV
                     DERVNIVNSIFSGSILTIFPVKGHDSEKWIAAANFTMQPVTDETMGSMAGGAVCPMTG
                     KTGMTDKPAADEAMGEGMVSGSADKCPVTGKTGKAGKLDKSMQEMAVDSGAKCPMGGD
                     TMTASAASNMMGGMGTAIPTAETNGPEKLLNAYFSAVVEANETGNWSEANRTLLSLKN
                     YQQLNGGSQLPSKNRVKMEVVYNNLSIFLTLAILYGLIGIILISMHVFNILKFNSKID
                     KYLDKSIYPLAIMFLVYTAGLALRWYISGHAPWSNGYEAMIFVGWGTTLSGLVFASRN
                     PITLAITSLLAAIALSVAGMSWMNPEITNLVPVLKSYWLVVHVAVITSSYGFLATGAM
                     LAFFNMCLMIARKQNNAAKINENIQEFSYIIELALTIGLFMLTVGTFLGGVWANESWG
                     RYWGWDSKETWALVSVLVYSIVLHLRKIPKLNSLLAFNIASLVAF"
BASE COUNT         1160 a          706 c          750 g          955 t
ORIGIN      
        1 aaaagtgacg gatttaaaga aacctctatt aaaatagatg cagtaaaata gtttttcaag
       61 cgtaaaaagg tgttaaacag ccggatattt gaatatccgg ctgtttattt atataaattg
      121 gtaacgaagc cgtattattg agttaaaaat aatcaattct cataaaagat ataattttaa
      181 aaattagcga attagctgtt ttgaaattat tacaaaatga aaataagatt aaaaacgaga
      241 aaaattatgt caaaaatgca atatctttgc gatttcaaag ttcataatca cattaaaagt
      301 cacccaaata aaacctttta acaaaatcag gtcaatatac aaaaatgaaa aaactcaatg
      361 atattctttt ctcaatggta acgaccattg tgcttttaat catttttgct gcaagtatcg
      421 gctacgccac ttttgccgag aacagttcgg gcacacctta cgcccgcgaa atagtctata
      481 atgccaagtg gttcgaattg ttactggcct tgctcattgt taacctaatt ggtagtattc
      541 ttcgtttcaa aatgaccaat aaacgcaaac tcagcgtgct gcttttccat ttgtcattta
      601 ttgtcatcct tattggcgcc ggcattaccc gctattttgg atcggaaggt atgatgcata
      661 tccgcgaagg cgaaaccagt aatgaaatta catccgaaaa aagctcagtt cacattgtag
      721 ctgaatataa cggtcaaaaa gtggaaagaa acttcgatgc aacatttggt gaaagcgaat
      781 caaatgaatt ttcccaaaaa cttgagattg gagataaaac aatcacgctt gaaagtgaac
      841 tctttgttcc gaattcaata gaaacattgg aagccgacga acatggcgaa ccgggattag
      901 atgttttcgt tatgaatcaa agtagtcatg gccaggatat tattcttaca gcccgcgaaa
      961 gaaacgaaag caatggagta gcgtttgctt ttgccgacag caccgtaaaa gccgatattc
     1021 acttcaccat ggacggcgag cagttatata tgaaggccaa ttcaccaata gctaaaatgg
     1081 gaatgatgga gagcaacgaa gctatgattc atgccggaac acttatgccg gctcaggaaa
     1141 aaacaattta caagagcggc aatctggttt ttgtactgaa aaaattcctg acacactcaa
     1201 aaaagagcct cacacagttt acgccggaca tgaacaaaat gggcgtaatg atacaaccta
     1261 gaaatgccat tatctttaat gtaagcgatg gcactgcatc taaaaagata aatgtattga
     1321 ctgctgaaaa cgaagtttcc aatccaggaa cctgtctgct caacgacata aaagtgagca
     1381 ttgaatatgg caacttacct caaaaactac cattcagcat cacgcttcgc gatttccagc
     1441 tcgaccgcta tccgggctca aacagccctt cctcctacgc cagcgaaata acattgacag
     1501 ataaagaaac aaaaacggtg agtccgttcc gcatttacat gaataatatt ctcaattacc
     1561 gcggttaccg gtttttccag tcgtcgtacg acaatgatga acaaggtaca gtgctctccg
     1621 taaaccacga ttactggggt acgcttgtaa cctatgtggg atatctctta atgctaattg
     1681 gtatggttct gacgttgttc aataaaaaca gccgtttcca caaggtgata aagctaagca
     1741 acgatctgca gcaaaaacac aaagcagcaa aaacattgct attgattggt ttattggcag
     1801 gttcggcatc catgtttgca gccgtaaata aaaacaacag taaagattct catttcaaag
     1861 cattaagcag cttgttgatt caggacgaag cacaaggtcg tatagaacca atcagcacct
     1921 atgcttcaga tcttattcgt aaaatatcca agaaaacaag ttataaaaac gaatcgtcgc
     1981 tggaggtttt gatgggtatg tgtaccaatc ccgaacactg gcaaaacgaa ccgattatca
     2041 aagtggctca cgatggattg gctaaagaac ttggtgctga aaaagattac gtttcgttca
     2101 ttcaactctt cgatataaaa aacggaggaa aatacaaact ggccgacaaa gtggatgcta
     2161 tttatcagaa agatccgtcg atgcgcaatc agtatgaaaa ggaattaatc aatgtggacg
     2221 aacgcgtcaa tattgtaaac agtattttct caggcagcat tctaactatt ttcccggtaa
     2281 aaggccatga ttccgaaaaa tggatagccg ctgcaaactt tactatgcaa cctgttaccg
     2341 atgaaactat gggaagtatg gcaggcgggg ccgtttgccc tatgaccgga aaaaccggca
     2401 tgactgataa acctgctgca gatgaagcta tgggtgaagg catggtaagc ggttctgccg
     2461 ataaatgtcc tgtaacggga aaaaccggca aggcaggtaa acttgataaa tcgatgcagg
     2521 aaatggctgt tgattcgggg gcaaaatgtc ctatgggtgg cgatacaatg accgcttctg
     2581 ctgcaagtaa catgatgggt ggaatgggta ctgccatacc aaccgctgaa actaacggac
     2641 ccgaaaaact tcttaatgct tatttttcag ccgtggttga ggcaaacgaa accggaaact
     2701 ggagtgaagc aaacaggact ttgctcagtc tgaaaaacta tcaacagttg aacggtggca
     2761 gccagcttcc atcgaaaaac cgggtaaaaa tggaagtggt ctataataac ctgagcatct
     2821 ttctgacact ggctattttg tatggtttga taggaattat tcttatctcc atgcatgtat
     2881 tcaatatctt gaaattcaat tctaaaattg acaaatacct ggataaaagc atttatccgc
     2941 tggcaattat gtttttggtt tacacggccg gacttgcact acgttggtat atttccggtc
     3001 atgcaccatg gagcaatggt tacgaagcca tgattttcgt aggctgggga actacacttt
     3061 caggattggt atttgcaagc cgcaacccaa taacgttagc aatcacctca ctccttgcag
     3121 caatagccct ttcggttgca ggcatgagtt ggatgaatcc ggaaataacg aatttggttc
     3181 ctgtgctgaa atcgtattgg ctggttgtcc acgtggccgt aattacgtca agctacggct
     3241 ttctggcaac aggcgccatg ctggcattct tcaacatgtg tttgatgata gcacgcaaac
     3301 aaaataacgc agctaaaatc aacgaaaata tacaagaatt cagctatatt attgagctgg
     3361 ccctgacaat cggattgttt atgcttaccg tgggaacatt cctgggtggc gtttgggcca
     3421 acgaatcgtg gggccgttac tggggctggg attctaaaga aacctgggca ttggtaagcg
     3481 tattggttta ttcaatagtt ctgcacttac ggaaaattcc aaaattgaac agtctattgg
     3541 cttttaacat agcttccttg gttgcattca g
//
LOCUS       DATDNM010000348         3247 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1005277, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000348 DATDNM010000000
VERSION     DATDNM010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3247
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1005277"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..3136)
                     /locus_tag="VI413_05780"
     CDS             complement(104..3136)
                     /locus_tag="VI413_05780"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6914168.1"
                     /translation="MRKIIVLSLLISLFAGIASAQHTLIYSNSDVLFNQGKELFTQRK
                     YAASFRSFEDFLKSTGTTEVGQRQEAEYYMAANAYELRQEDASDRLTKYLIQHPYSPF
                     LDKANAMLGILLFEKKDYAKALAYFNEVNDKHLGSRERVNFMFCKGYSCLETKNYAQA
                     LPIFKELKGMNTRYNLSATYYYAYTEYTLGNYDVALPEFLKIENDAAYKNIVPYYIIQ
                     IYYAQKEFDKLNDRAEIILKNNPENKNNAEIYRIAGEIAYRKKDYAKAISYLKSYEKI
                     FPQVLRNDMYLLGLSYFQTKDYANAVQYLSKATTENDEMSENAYLHLGNSYVKLKDLT
                     NARLAYEASLRTNFNKTVREEALYNYALTSFESTSAFGESITAFDQLLVEFPNSKYAD
                     EAYDYLTSVYMTTKNYDAAYQSILRIKTPNAKLLETKQYLLYQLGTESFMQNKLDKAI
                     QYFSLSLQSSQTGKYSAECLYWRSESYFRTNHPEQSITDLNAFFNNSYARSSVNYVAA
                     NYALAYGYFSKKNYSEALNWFLKYVNSESNSRATTYSDALNRIGDCYFNARNFERAEN
                     YYSKAASASPNTADYAMFQAAYVTGLQKNYSTKIAKLENLITKYPKSEYTDDALYEMG
                     RAYLMMDNDGKAISTFKRLLDSQPNSDLARKAALEIGMIHFNGKEYDQAITAFKSVIF
                     KYPGTEESYTALESLESVYIEINDVSSYLAYTKTLGRTISTKTANREDSISYIAAEKQ
                     YMTGKYTQAISGLKIYLNKFCSGGRYCTNAQYYLADSYYRTSDKSNALVAYQNLLKIT
                     GNQYTEEAVLRSAEITYDQKDYNSALQYFKQLQTIAQSNENKNVARLGVLRCSYFLND
                     NQTTINIVNEIMADTRSSDELKAEARYNRAKAYIALGQSAQATSDLKLLAAETRTANG
                     AESKYLLANLYFQQGKLDDTEKEVLDFAKKNTPHQFWLARSFVLLSDVYIKQNNDFQA
                     KQYLLSLQKNYTKADEIQTLITDRLNAISEREKNTIIN"
BASE COUNT          824 a          620 c          699 g         1104 t
ORIGIN      
        1 tgcgtagttg aaccggcagt aaacaaaagg acaggtaata tatattttaa tgtttccata
       61 caatttctaa agttatgata tttgaaatat aaactatcaa ctactaatta atgattgtgt
      121 tcttttcccg ttcgctgata gcattcaacc tgtcggtgat taatgtttgt atttcgtcgg
      181 ctttcgtata gtttttctgc aaactcaata aatattgttt tgcctgaaaa tcattatttt
      241 gtttaatgta aacatcggac aataacacaa aactgcgggc cagccagaac tgatgcggcg
      301 tattcttctt tgcaaaatca aggacttctt tttcggtatc atctaattta ccttgttgaa
      361 aatacaggtt tgcaagcaga tatttcgatt cggctccatt ggcagtccgt gtttctgcgg
      421 ccagtaattt aagatcggaa gttgcttgtg cagattgtcc cagtgcgata tatgctttgg
      481 cgcggttgta tcgggcttca gctttcaatt cgtcgctcga acgggtatct gccataattt
      541 cgtttacgat atttatggtt gtctggttgt cgttcaggaa atagctgcaa cgaagtacac
      601 ctaaccgtgc cacattttta ttttcattgc tttgggctat agtttgtaat tgtttgaaat
      661 actgcaatgc cgagttgtaa tctttttgat cgtaagtgat ttcagcgctt cgtagcactg
      721 cttcttccgt atattgattt cccgtgattt tgagtaaatt ctggtatgca acaagtgcgt
      781 ttgacttatc ggaagtacga taataactgt cggccaggta atattgagca tttgtacaat
      841 atcttccgcc ggaacagaac ttgttcaggt agattttcaa cccgcttatt gcctgtgtgt
      901 attttccggt catatattgt ttctcggcag caatgtacga gattgaatct tcgcggttag
      961 ccgtttttgt gctgatggtt cgtcccagtg ttttggtgta agccaggtat gaagacacat
     1021 cgttgatttc gatataaacc gattcaaggc tttcaagggc agtgtatgat tcttcagtgc
     1081 ccggatattt gaaaataacg cttttaaatg ctgtaatggc ctggtcgtat tcttttccgt
     1141 tgaaatgaat cattcctatt tcgagagccg ctttacgagc caggtcgctg tttggttgtg
     1201 aatcgagcaa tcgtttaaag gtggaaatgg ctttcccatc gttatccatc attaaatacg
     1261 cgcgtcccat ttcgtacagg gcgtcatcgg tatattccga tttcggatat ttagtaatca
     1321 ggttttcgag tttcgctatt ttcgttgagt aatttttttg taatcctgtt acgtaagctg
     1381 cctgaaacat tgcataatcg gctgtgtttg gacttgcaga ggctgccttg ctgtaataat
     1441 tttccgctct ctcaaaattg cgggcattga agtagcagtc tccaatccgg ttcaatgcat
     1501 ccgaataagt tgtggcacgt gagtttgatt cggaattcac gtatttcagg aaccagttaa
     1561 gcgcttcgga gtaattcttt ttagagaaat aaccataagc caaagcatag ttggcagcca
     1621 cgtagttgac gcttgaacgg gcatatgagt tgttgaaaaa tgcattcaaa tcagtgatac
     1681 tctgttccgg atgattggtg cggaaataac tttcggaacg ccagtacaaa cattcggcag
     1741 agtattttcc ggtttgcgaa ctttgaagtg acagcgagaa atactgtatg gctttatcca
     1801 gtttgttttg catgaatgat tcagttccaa gctgataaag caggtattgt tttgtttcca
     1861 gcaatttggc attcggtgtt tttattctca aaatagattg ataggctgca tcgtagtttt
     1921 ttgtcgtcat ataaaccgaa gtcaggtaat cgtacgcttc gtcggcatat ttcgaatttg
     1981 gaaactctac caacagctga tcgaaggctg taatggactc accaaatgca gaggtcgatt
     2041 cgaaagacgt aagcgcgtaa ttgtaaagag cttcttcacg cactgtcttg ttgaagtttg
     2101 ttcgaagcga agcctcatag gccaaccggg cattggttaa gtctttcaac ttcacatatg
     2161 aattccctag atgcaggtat gcgttttctg acatctcatc attctccgtt gtggctttcg
     2221 acaggtattg aactgcattg gcatagtctt ttgtctggaa ataagataat ccaagcaaat
     2281 acatgtcgtt ccgtagtacc tgagggaata tcttttcgta gcttttcagg tagctgatcg
     2341 ctttagcgta atcttttttc cggtaagcta tttcgccggc aatacggtaa atctctgcat
     2401 tgtttttatt ttcgggatta tttttcagga taatttctgc acggtcattc agcttgtcga
     2461 attctttttg ggcgtaataa atctggatga tataataagg tacaatgttt ttgtacgccg
     2521 catcattttc gatctttaga aattcaggca gggcaacgtc ataattgcca agcgtatatt
     2581 ccgtgtaagc ataataataa gttgcagaaa ggttgtagcg tgtgttcatt cctttcagtt
     2641 ccttgaaaat agggagcgcc tgcgcataat ttttcgtttc aaggcaactg tagcctttgc
     2701 agaacataaa gttcacccgc tcgcggcttc caaggtgttt atcattcacc tcgttgaaat
     2761 aggccagtgc ttttgcgtaa tctttctttt caaagagcaa aatgcctagc atcgcatttg
     2821 ctttgtccag aaaaggggag taaggatgtt ggatcaggta ttttgtcagc ctgtcggaag
     2881 catcttcctg tcgtaattcg taggcattgg cagccatgta gtattctgct tcctgccttt
     2941 gtcccacttc agttgtcccg gttgacttca ggaagtcttc aaaactgcgg aacgaagctg
     3001 catattttcg ttgggtaaac agttctttac cctggttgaa aaggacatcg gaattgctgt
     3061 atataagcgt atgttgcgca gaagcaattc cggcaaacaa acttataagc aaacttaaaa
     3121 cgattatttt tctcataaat gtgatagtta aacagaaccc ctaacccctt aaggggaacc
     3181 gggttacttt tgtcttcaaa ttttctttat aatttcttct ttaatgatat tcaacgaatt
     3241 ctctgtg
//
LOCUS       DATDNM010000349         5141 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1005317, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000349 DATDNM010000000
VERSION     DATDNM010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5141
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1005317"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            34..171
                     /locus_tag="VI413_05785"
     CDS             34..171
                     /locus_tag="VI413_05785"
                     /inference="COORDINATES: protein motif:HMM:NF017103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HEY6914169.1"
                     /translation="MRNKILYVSMTSSVLRHDLFLSREEIKKSLNNQVGVEVIVDIVF
                     R"
     gene            231..752
                     /locus_tag="VI413_05790"
     CDS             231..752
                     /locus_tag="VI413_05790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914170.1"
                     /translation="MDYRDQLKNPASLRYIDKLVEVVIANPVDFETIYLLIFDADLKV
                     AWRAAWSCEKISEKHVDWFNDMHFNELVKLFISTKHEGLQRGCISILNNLPLPNLIPV
                     DLINICFERMVSLKSPIAVQALSMKMLLRICKNEPDFIPELKAYLENIDPGSYSAGFN
                     STRKNVLKALNNK"
     gene            884..2428
                     /locus_tag="VI413_05795"
     CDS             884..2428
                     /locus_tag="VI413_05795"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008147311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEY6914171.1"
                     /translation="MTLKKNILALRQKKAIVEKGGGDKAIEKQVAMGKMTARDRILAL
                     LDAGSFHEYDLFVEHEERNFGMEDKVLAGDGVITGTGTIKGAPICIYAQDFTVMGGSL
                     GLKHARKITKIMDHALRMKVPCIGINDSGGARIQEGIGALAGYGEIFYRNTMASGVIP
                     QISVILGPCAGGAVYSPALTDFVFVVENISKMFITGPNVIETVLGEKISQEDLGGARV
                     HAEITGNAHFYALSEMECLEQIKELISLIPHSNQEKAAKIECKEPNFKKHIENIIPAD
                     PKQPYDVRDVILALADDSKFLEVQELWAANIVIGFGRMGGETVGFVANQPMYLAGVLD
                     CDASDKAARFIRYCDAFNIPIITLEDMPGYLPGVDQEHAGVIRHGAKMLYSYSEATVP
                     KITVILRKAYGGGYIAMNSRHLGADFMFAWPGAEIAVMGPEGAANIIFRKEIMEAEDE
                     DAMRQQKVQEYIEKFANPFVAASKGYIDAVIEPMETRELLLHALEVSKNKDDYRPAKK
                     HGVPPF"
     gene            2522..2857
                     /locus_tag="VI413_05800"
     CDS             2522..2857
                     /locus_tag="VI413_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein subunit"
                     /protein_id="HEY6914172.1"
                     /translation="MQTEKQEYVDFAVTARKYKTLLTKKYQNRKPWVNPSPYEIQSII
                     PGTILEVFVKEGDVVKEGEPLLILEAMKMQNRIEMPFTARIKKINVEVGVRIPKELLM
                     IELEAVDAE"
     gene            complement(3065..4024)
                     /locus_tag="VI413_05805"
     CDS             complement(3065..4024)
                     /locus_tag="VI413_05805"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEY6914173.1"
                     /translation="MTLKKSLHSLFSEIFTFSKNDFHFLSYIYTFVLVICCIYLNYSS
                     GFYREVMRPTYSNGDSIWAFPLFYGIMYFVVAIPVLFFQKDYKLLRNTNFYLKSLFFI
                     ILYGGSIGYFGYRDWEFPSLFTEERLFTIKTISQLKGSIIYVIPLFFLKKNVDKNVDG
                     LYGLTNNTKHIQAYLTLFLMLLPFLIAVSFTPDFLSAYPQFHPWTFDGIFGFPTWWYT
                     AMYEVTYAIDFVKTELVFRGMLVIGMVSIMGRKSVLPMVAMYAAIHFGKPLGETLSSI
                     FGGYILGVLAYQTRHIWGGVIVHICIALTMETMGFLQYYLLRH"
     gene            complement(4091..4612)
                     /locus_tag="VI413_05810"
     CDS             complement(4091..4612)
                     /locus_tag="VI413_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEY6914174.1"
                     /translation="MHKIEYFPLVTETGEIIGKATRKECHSGSFLLHPVVHLHVFNSA
                     GELYLQKRNMDKDIQPGKWDTSVGGHVDFGEEIPEALYREVREELGIIDFEPKFITRY
                     KFVSKQEAELVNVFFTIYNGEIEPDPTEISEGRFWPIQEIKNQLKNNVFTPNFEQEFQ
                     TIVLKLNEIDFEV"
BASE COUNT         1657 a          865 c          970 g         1649 t
ORIGIN      
        1 aataatatcg tacaatatac atcaggttta atcatacgaa ataaaattct gtatgtaagt
       61 atgacttcat ccgtgcttcg ccacgatttg tttctgtcgc gcgaagaaat caaaaagtca
      121 ctcaataatc aggtaggagt ggaagttatt gtggatattg tgtttagata gcagcaaaca
      181 gtaagcagga ttaactatta acccattggc aactacctct aaattaattt atggactatc
      241 gcgatcaact taaaaatccg gcttcattac gttacataga taaattggtt gaagtagtta
      301 ttgctaatcc ggttgacttt gaaaccattt atttattgat ttttgatgca gacctgaagg
      361 tggcctggcg cgctgcatgg tcttgtgaaa aaatcagtga aaagcatgtg gattggttta
      421 atgatatgca ttttaatgaa cttgtgaaat tatttatttc aactaagcat gaaggactac
      481 agcgtggctg tatatctatc ctaaataacc ttcctttacc caatctcatt cctgtcgatt
      541 taattaatat ttgttttgag aggatggtat cactgaaatc tcccattgca gtacaagcgc
      601 tttccatgaa aatgcttctg cgtatatgta aaaatgaacc cgatttcatt cctgaattaa
      661 aagcttatct tgaaaatatt gatccgggga gttattcggc gggtttcaat tctacccgaa
      721 aaaatgtgct taaggctttg aataataaat agtttatttt tcttaagaga aacaaactga
      781 ttaagattgc acactttggc aaaaaaagtg ttacttttgc gcccgatatt tgagtggtct
      841 aaaaaccgct tgtactttaa gtttaattaa ataaaaagtt tttatgactt taaagaaaaa
      901 cattctggca ttacgacaaa aaaaagcgat tgttgagaag ggtggaggtg acaaagccat
      961 cgagaaacaa gtagctatgg gtaaaatgac tgcccgtgat cgtattcttg cattgttaga
     1021 cgctggttca tttcacgaat acgacctttt cgttgaacac gaagaacgta acttcggaat
     1081 ggaagacaaa gtgttggctg gtgatggtgt tattaccggt accggaacta tcaaaggcgc
     1141 tccaatttgt atttacgcac aagactttac cgtaatgggt ggttcgttag gactgaagca
     1201 tgcccggaaa attaccaaaa ttatggatca tgcacttcgt atgaaagtgc cttgtatcgg
     1261 aattaatgac tcaggtggtg cccgtattca ggaaggtatc ggcgcgttgg caggttatgg
     1321 cgaaattttc tatcgtaata ctatggcttc cggagttatt cctcaaattt cagtaattct
     1381 gggaccatgt gccggtggag ctgtttattc tcctgctctt accgactttg tatttgtggt
     1441 tgaaaacatt tccaagatgt ttattaccgg tccgaatgta attgaaactg tattgggtga
     1501 aaaaatatca caagaagatt tagggggcgc gcgtgttcat gccgaaatta ccggtaacgc
     1561 tcatttctat gctttaagtg aaatggaatg tcttgagcag atcaaagaac ttatttctct
     1621 tatccctcac agtaatcagg aaaaagccgc taaaattgaa tgcaaagaac caaatttcaa
     1681 aaaacatatc gaaaacatta ttcctgccga tccaaagcaa ccttatgatg tgcgtgacgt
     1741 tattctggct cttgctgatg attctaaatt cttagaagtt caggaacttt gggctgctaa
     1801 catcgttatc ggttttggtc gcatgggtgg agagactgta ggttttgtag ctaaccaacc
     1861 aatgtacctg gcaggtgttc ttgactgtga cgcttctgat aaagcagctc gttttatccg
     1921 ttattgcgat gctttcaaca ttccaattat tacccttgaa gatatgccgg gttatttacc
     1981 gggtgttgat caggaacatg ccggtgttat ccgtcacggt gctaaaatgt tatattctta
     2041 ctcagaagct actgttccaa aaattaccgt tattcttcgc aaggcttatg gtggtggtta
     2101 tattgccatg aactcacgtc accttggtgc tgactttatg tttgcatggc cgggtgctga
     2161 aattgctgta atgggaccag aaggagcagc taacattatt ttccgcaaag aaattatgga
     2221 agctgaagac gaagatgcaa tgcgtcaaca aaaagttcag gaatatatcg agaaatttgc
     2281 taacccattc gtagctgctt ctaaaggtta tatcgatgca gttatcgagc caatggaaac
     2341 ccgcgaattg ttattgcacg ctcttgaagt ttctaagaac aaagacgatt atcgtccagc
     2401 aaaaaaacac ggtgtaccac cattctaatt tacaatttag ttatttacaa tttactattg
     2461 gcttgcaatt ttttttgcaa tatcaaatga agtgatttat aactagtaac taaaataaat
     2521 tatgcaaaca gaaaaacaag aatatgtaga ttttgcagtc acagcgcgaa aatacaaaac
     2581 actcttgact aaaaaatatc agaatagaaa accttgggta aatccaagtc cgtatgaaat
     2641 ccaatcgatt attcccggaa ctattcttga agtttttgtg aaagaaggtg atgtagtaaa
     2701 agaaggagag ccactcctga ttttggaagc aatgaaaatg caaaatcgta ttgaaatgcc
     2761 ttttacggcc cgaatcaaaa aaatcaatgt agaagtggga gtgagaattc ctaaagaact
     2821 attgatgatt gagttggaag cggtggatgc tgaataaaaa atatcagata atgaaaacgg
     2881 ttgatcagaa atggtcaatc gttttttttt tttggaatct ttttattctt ttatctgaaa
     2941 gtttgaattc acagagaatc acttacaatt cacctataat tcacagagaa tcacagagaa
     3001 ttcacataca aatcacagta ttagtactat cacttagcaa tcacttacct gatgctgtat
     3061 ttttttagtg tctaagcagg taatactgca aaaatcccat tgtttccata gttagtgcaa
     3121 tgcaaatatg cacaattaca ccaccccaga tgtggcgggt ttgataagcc aacactccaa
     3181 gaatataccc gccaaagatt gaggacagag tttctccaag cggttttcca aagtgaatag
     3241 cagcgtacat tgccaccatg ggaagtacag attttcgtcc cattatactt accataccaa
     3301 taacaagcat tccacggaat acaagttctg tcttgacaaa atctatagca taagtcactt
     3361 cgtacattgc tgtataccac catgttggaa acccgaaaat gccatcaaat gtccaagggt
     3421 gaaattgtgg atatgcactt aaaaaatcag gagtaaatga aaccgctatt aaaaatggca
     3481 aaagcattaa aaatagagtc aggtatgcct gtatgtgttt agtattgttt gttaggccat
     3541 acagtccatc tacgttcttg tcaacgttct ttttcagaaa aaacagcggg attacataaa
     3601 ttatacttcc ctttaattgg gaaattgttt ttatagtaaa tagtctttct tctgtaaata
     3661 acgatggaaa ttcccaatcg cggtatccaa aataaccgat tgatcctcca taaagtataa
     3721 taaaaaatag acttttcaga taaaaattgg tattccgaag cagtttataa tctttctgga
     3781 aaaataaaac aggaatagca acaacgaaat acataatgcc ataaaacaga gggaatgccc
     3841 aaatagaatc tccattagag taagttggac gcattacttc cctgtaaaat ccggaactgt
     3901 aatttagata tatacagcag ataaccagaa caaaggtgta aatgtaggac agaaaatgaa
     3961 agtcattctt cgaaaaagtg aatatctcac taaataatga atggagtgat ttttttaaag
     4021 tcatgtacgg ttttctagtg atctgttttt acaatattct gacggaaaat gaattgtatt
     4081 tttgttattt tcaaacttcg aagtctatct catttaattt gagtacaata gtttgaaact
     4141 cttgttcgaa atttggagta aatacgttat tttttagctg atttttaatt tcctgaattg
     4201 gccagaaccg accttccgaa atttcagtcg gatcgggttc aatttctcca ttatagattg
     4261 tgaaaaatac atttaccaat tcagcttcct gtttcgatac aaatttgtag cgtgttatga
     4321 actttggctc aaaatcgatt atccctaatt cttcacgtac ttccctgtat aaagcttccg
     4381 gaatttcttc cccaaaatcg acatgaccac ctaccgatgt atcccatttc ccgggttgta
     4441 tgtctttgtc catatttctc ttttggagat ataattctcc ggcagaatta aatacatgta
     4501 agtgaacgac tgggtgcaat aagaatgacc ctgaatgaca ttctttgcgc gtggcttttc
     4561 ctatgatttc gcctgtttct gtaacaagtg ggaaatattc tattttatgc atgatttttt
     4621 ttttgcaaag atataaattt caatttgaat taataagttg gaatcagtac ctgattaagt
     4681 aaactaaata ttttaaaaca ataaaacaac tttaaagtag ctgatttgta aatttggttt
     4741 caagttaata tgaataacaa aatatgtttg ctgagattgt cctattttta aatagaagaa
     4801 gtgcagaact agcaccgaag gaatggagag tttgttatat agatgaattt aattaaaaaa
     4861 aaagttgttt ccggtcacga ataaagctac atttcttgtc ctttcttagg tcgtttaaaa
     4921 ggtttattgt atctttgcgt gcatcttttg tgtgaaaata agctcaaatt ataaacttag
     4981 atattctttt ttcagagaaa caataaatag ttattttaag ttgagttttt tctgtattta
     5041 taaacaagtc attttaccga tgtttaaagt catttttttt gatgaaagaa attaaaattg
     5101 ccgttatagg tttgggttat gttggtttac cactagcaat t
//
LOCUS       DATDNM010000350         2403 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_151774, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000350 DATDNM010000000
VERSION     DATDNM010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151774"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2105)
                     /locus_tag="VI413_05815"
     CDS             complement(<1..2105)
                     /locus_tag="VI413_05815"
                     /inference="COORDINATES: protein motif:HMM:NF027224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BNR repeat-containing protein"
                     /protein_id="HEY6914175.1"
                     /translation="MKETITQIRIGLLLIISFAVVTLANATTATTVNSISKNGVTRVS
                     AAVTYEGNVVSKEGAWCWFADPRALHYENKTGTINSSYIGYIDVHGNIKATQHDFLTG
                     KKNEVLIRSYFQPDDHDNPTFLVLPDERIMIFYSRHTDEACFYYRVSKKPGDISSLGA
                     EIKLVTANNTTYPSPFILSDDPTHIYLCWRGINWHPTIAKMSIPDAQDKADFTWGPYQ
                     MVQSTGARPYCKYTSNGKDKLYLTYTTGHPDNEYPNYVYYNYVDINTLQLKDITGTVL
                     STIANGVHNVNKTTYPTTYPNAVVDAPTDQRDWVWQTAIDKDGQPVIAMVQISNDKNT
                     HNYYYAKWTGTAWRKTFLANGGGKFHQTPGLELCYSGGMAIDDSNPNVVYCSVPVNGT
                     SGSIYEIMKYTIGANGTIASTEQITTNSTLNNVRPYIVTNSGSSPLRLVWMHGNYYDW
                     IVSSSQPKGYPTAIHSDYALPTDNVDLANGLVVNEDFSGSVQGSAHTTNGVLISTQET
                     SAILLAQSAPAFSISLTPYIYEGSYNGTIFKMANLTYGLNGTTVKPYVVIDQTTYNST
                     NLLGTSVVWQTQARATGGVWWDPTKLKYFNLTLTYENGVLKIFRNGLIDQVIDVPNLS
                     LGDVTVGGFNGWVEDCRIYNRALAQGEVKKLTETSLSYTFNSSLLTEIELNTLVVPQN
                     IYTDIVLPAKTTSGTAVSWV"
BASE COUNT          722 a          488 c          444 g          749 t
ORIGIN      
        1 acccaactca cagcagtgcc cgatgttgtt ttagcaggca aaactatatc ggtataaatg
       61 ttttgaggaa caacaagtgt gttcaactct atttcggtaa gcagactgct attaaaagta
      121 taactcaggc ttgtttcagt aagttttttt acttctccct gtgccagagc acgattgtaa
      181 atacgacaat cttcgaccca accattaaaa ccacctacag taacatcacc caaactaaga
      241 tttggaacat caatcacctg atcgataagt ccgtttctga atattttcaa cactccattt
      301 tcgtaagtaa gagtcaggtt gaaatatttg agttttgtag ggtcccacca tactccgcca
      361 gtggcgcgtg cctgagtttg ccatacaact gaagtcccca acagatttgt actgttataa
      421 gtagtttggt caattacgac ataaggtttt acagttgttc cattcaatcc ataggtcaga
      481 ttagccattt taaatattgt accgttgtaa gacccctcgt aaatataggg tgtaagcgaa
      541 atcgagaaag cgggagcact ttgagctaac agtattgctg aagtttcctg agtagaaatg
      601 agaacgccat tcgttgtatg tgcacttccc tgaacagaac cactaaaatc ctcatttact
      661 acaagtccgt ttgcaagatc aacattatca gtgggtaatg cataatcact atgtatagcc
      721 gtcggatagc ctttgggttg agatgaactt acaatccagt catagtaatt cccatgcatc
      781 cacaccaatc ttaatggaga actccctgaa ttagttacaa tatagggtcg tacattattc
      841 aacgtagaat tagtggtaat ttgctctgtc gaagcaatag taccatttgc ccctatagtg
      901 tacttcataa tttcatagat actacctgaa gttccattaa cgggaacaga acaatagaca
      961 acattcggat tgctgtcgtc aattgccata cctccgctgt agcacaactc aagtccgggt
     1021 gtctgatgga actttcctcc tccgttagcc agaaaagttt ttcgccatgc tgtgcccgtc
     1081 catttagcat aataataatt gtgggtattt ttatcattac taatctgaac catagcaata
     1141 accggctgtc catctttgtc aatggcagtt tgccaaaccc agtcgcgctg atcggtagga
     1201 gcatctacca ctgcattcgg ataagttgtc gggtaggtcg tcttgtttac attatgaaca
     1261 ccattggcaa tggttgaaag aaccgttccg gtaatatctt tcagctgaag agtattaata
     1321 tccacataat tataatatac ataattcgga tattcattat cgggatgtcc ggttgtataa
     1381 gtcagataca acttatcttt tccattcgat gtgtatttgc aatacggacg agcaccggtt
     1441 gattgtacca tttgatatgg tccccaggta aagtcagcct tatcctgagc atctgggatt
     1501 gacatttttg caatagtcgg atgccagttg attccccgcc agcaaagata aatatgcgtc
     1561 ggatcgtcag acaggataaa aggtgatgga taagtggtat tgtttgccgt caccagcttt
     1621 atttcggctc caagactgct aatgtcaccg ggttttttgg atacccgata ataaaaacaa
     1681 gcctcgtcgg tgtgacggga ataaaaaatc ataatccgtt catcgggcaa caccagaaat
     1741 gtaggattat catgatcatc gggttgaaaa tacgaacgta tcaacacttc atttttttta
     1801 ccggtaagaa aatcgtgctg agtggctttt atattcccat gaacatcaat atacccgatg
     1861 taagaactat tgattgttcc ggttttattc tcataatgca acgccctggg gtcggcaaac
     1921 cagcaccatg ctccttcttt tgaaacaaca tttccttcat aagtcactgc agcagaaaca
     1981 cgcgtaactc cattttttga aatactattg acagtggtag ctgtggtagc attcgccaaa
     2041 gtaaccacag caaagcttat tatcaatagc aacccaatcc tgatttgtgt aattgtttct
     2101 ttcacctttt attctgtttg tattaatgac ctgttagttc tgtttttgga atttattttt
     2161 gcaagagata ttttatgtaa ctaaacataa aactaactct atgattcaat ggacttcttg
     2221 caaaatacaa attaaatcga taacaaaaat aatagatagc aaaatttcat tagaggataa
     2281 ttaagtcaaa ctgagggata aatctactat ttaaataaaa actgatcaga gctctttcaa
     2341 ttatgttatt ctcgttcgat tctcttttca atctttgaca gattaaaaat aagaagtttt
     2401 ttt
//
LOCUS       DATDNM010000351         2064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1967789, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000351 DATDNM010000000
VERSION     DATDNM010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1967789"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1055)
                     /locus_tag="VI413_05820"
     CDS             complement(<1..1055)
                     /locus_tag="VI413_05820"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEY6914176.1"
                     /translation="MNISEQPLYERITIQLFLLALVIAFLVLARELLIPFTIAIVFTF
                     LLLPVSSKLQQWRIPKAVSILISIFIALSVLLALLYFFYSQVVSFVNDWPELKSSMNA
                     KWETFQLFITEKFNVSRYEQQVWIKSKIQENASTGGVLVLGIFSATTSFLASFALIPI
                     YIFFLSFYKDKFKEFIRLIADEDKHDDTFILVKKISTVSQKYLVGIFLDVVILSVLNS
                     AGFLILGLKHAILFGVLASVLNIIPYIGVLIGSTLPILMAFLTKDSMSYALGVAGICF
                     FVQFLDNNFITPYVVGSSVSINPLTAIIVLVASALIWGIPGMVLCMPLTGMAKVLCDN
                     VDSLKPYGFLLGEEVNY"
     gene            complement(1669..>2064)
                     /locus_tag="VI413_05825"
     CDS             complement(1669..>2064)
                     /locus_tag="VI413_05825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="organic solvent tolerance protein OstA"
                     /protein_id="HEY6914177.1"
                     /translation="MNEDAFIIGMEDDSIRFNQIKGKNMIGYVRKNELYKIDVNGNGQ
                     SNYYAYDKKGIIGLNKAESSNITIYMNKGKVSRIALIKSPDGELKPMAEIDEGDKKLP
                     GFNWQQEIRPKSKMDIFRITQPADTGNKE"
BASE COUNT          712 a          368 c          338 g          646 t
ORIGIN      
        1 ctgtaattaa cctcctcccc aagcagaaaa ccgtagggtt ttaatgaatc aacattgtca
       61 cacaacactt tggccattcc cgttaaaggc atgcaaagca ccattcccgg tattccccat
      121 attaaagcac tggcaaccaa tacaataatg gctgtcaatg gattgatact tacgctgcta
      181 cccaccacat agggagtaat gaagttattg tctaaaaact gaacaaaaaa gcaaataccg
      241 gcaacaccca gggcatagct cattgaatct ttagtcagga aagccattaa aatcggtaaa
      301 gtgctgccga ttaacactcc aatatatgga ataatattta gtaccgaagc aagtacccca
      361 aataatatgg catgtttaag acccagtatt aaaaatcctg ctgaatttag aaccgaaaga
      421 atcaccacat ctaaaaagat ccctacaagg tacttctggg aaacagtgga tatctttttt
      481 acaagaataa aagtatcatc atgtttatct tcatcagcaa tcaggcggat aaactccttg
      541 aatttatctt tataaaaact tagaaaaaat atataaatgg ggataagagc aaagcttgcc
      601 aggaaagagg tagtagcaga aaatataccc agtacaagaa cacccccggt acttgcattt
      661 tcctgtatct tacttttaat ccatacttgt tgttcataac ggctaacatt aaacttttcg
      721 gtgatgaaca gctgaaaagt ttcccatttc gcattcatgg aacttttaag ttcaggccag
      781 tcattgacaa agcttacgac ctgagaatag aaaaaatata gtaatgccaa aagaacggat
      841 aaggcaataa aaatactgat caatattgac accgctttag gtattctcca ttgctgtaat
      901 ttactggaaa caggaagtag cagaaaggta aaaactatgg cgattgtaaa aggaatcaga
      961 agttccctgg ccaaaaccaa aaaagcgata accaaagcca ataaaaagag ctggatagta
     1021 atcctttcat ataatggctg ctcagagata ttcatagtat tgaatttttg tggacaatag
     1081 tttatgatat aaatttacat gatttatttt gaaaaatgta aattagacaa tatagtttta
     1141 ataaagtctg cagaattaat ggttttatag aataccaaat attttgttca caagataaaa
     1201 aatgtattat aagaataaat agtaattttc agttgtataa tgctataaca acaaacagat
     1261 agtttttctc aacatttata gaaatatttt tgatagatag actaaattat aaatgttaaa
     1321 tattaatgga aaaagaaaaa taataattta tggatttact actattttcc aattctaatt
     1381 gtatatttgg ttgaatttta ttaatccata aaaaagctat cgggttcaaa tagaaataat
     1441 caatcaatta ccggtagagc ctttcaaggg caggttttcc tgcccttgtt ttataattct
     1501 aagccaagta aatagacgct aattttaggg aacccatggg gtaatagttc catgccgaat
     1561 gctcgggatg ggtttctgga aataagaacg cttggtaagg attactatag aggcttaaag
     1621 tccttaaagt ttttaagttc tgcaacaata atccatcttt gataagggtt attccttatt
     1681 gccagtatct gcaggttgtg ttattctgaa aatgtccatt tttgatttgg gccttatttc
     1741 ctgctgccag ttaaagcccg gcaatttctt gtctccctcg tcaatttcag ccatcggttt
     1801 caactctcca tcgggtgatt ttatcagagc gattcttgaa acctttccct tattcatata
     1861 aatggttata ttgctgcttt ctgccttatt taggccaatg atgccctttt tatcataggc
     1921 ataatagttg gattgcccat ttccattcac atcaatttta tacagttcat ttttacgtac
     1981 ataaccaatc atgttttttc ctttaatctg attgaaccgg atgctgtcat cttccatgcc
     2041 aataataaaa gcatcttcat tcat
//
LOCUS       DATDNM010000352         2003 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_685369, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000352 DATDNM010000000
VERSION     DATDNM010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_685369"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(33..272)
                     /locus_tag="VI413_05830"
     CDS             complement(33..272)
                     /locus_tag="VI413_05830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914178.1"
                     /translation="MSENDLCMSGVGHCTGENMLCTGENVLCTGENGLRTGEIYHCTG
                     EIDLCMSEIGHCTGEIGHCTCDTFNHIPLSTHTKL"
     gene            388..1062
                     /locus_tag="VI413_05835"
     CDS             388..1062
                     /locus_tag="VI413_05835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914179.1"
                     /translation="MFRTTDQFLETNKAAFAGFDPIIASHNRIKAGIAVIDGLSKTQA
                     IGTKVKSGLKKLEKEELDTIAYKVTDALTALAASTNDSELRMVALLEKSTLKRLREVN
                     YNIKIQAIYKAALPYADKLAMWGVTMEDVEALNTKSTSYVLRTPDIRNVQVITKQAST
                     EIHKKVIEIRDEIQDTLDALMKPFNTLNPTLYGQYINARTIVEIAATQSKKAEDPQAD
                     AEKESA"
     gene            1455..1712
                     /locus_tag="VI413_05840"
     CDS             1455..1712
                     /locus_tag="VI413_05840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914180.1"
                     /translation="MITIDQLRSVMKFQLNNFNNEGVSIDDSTIHSTVLSEDDGFSHV
                     NSVQMYKDVIRFTLLKQGHTLKKWPAYWLSLSVFDLSNQII"
     gene            1747..>2003
                     /locus_tag="VI413_05845"
     CDS             1747..>2003
                     /locus_tag="VI413_05845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914181.1"
                     /translation="MSFVALLYAQDGSMSVGFVQTTLEKNAVNFAVDYVKKLQPSLEL
                     FKTGSNSLYSFTPDIKILVGSGDVFNGITAKYVGNIMVFNTT"
BASE COUNT          673 a          374 c          387 g          569 t
ORIGIN      
        1 cagagtccga tggctggcgt tcaacaacag cctcaaagtt ttgtatgggt tgataacgga
       61 atgtgattga aagtatcgca cgtgcaatgg ccaatttcgc ccgtgcaatg accaatttca
      121 ctcatgcaga ggtcaatttc acccgtgcaa tgataaattt cacccgtgcg aaggccattt
      181 tcacctgtgc agagcacatt ttcacccgtg cagagcatat tttcacccgt gcaatggcca
      241 actccactca tgcagagatc attttcactc atgcagagat caatttcaag tattcaaatg
      301 aacatttcgc aaattattca cggtctttct aatttataaa ccctaaaaaa caaaagtatg
      361 aacagaaaag aagtaaattt atttaacatg tttagaacaa ccgatcagtt tttggaaaca
      421 aataaggcag catttgctgg ctttgatccc atcattgcat cgcataaccg gatcaaagca
      481 ggtattgctg tcattgatgg actaagcaaa acgcaggcta tcgggacaaa agtaaaatcc
      541 ggactgaaaa aactggaaaa agaagaatta gacacaattg cctacaaagt aaccgatgca
      601 ttgactgcac tggctgcctc taccaatgat tcggaactaa gaatggttgc attgttggaa
      661 aaatcaacat tgaaacgctt gcgggaggta aattataata ttaaaatcca ggctatttac
      721 aaagcagcat tgccttatgc cgataaactt gcgatgtggg gtgtcaccat ggaggatgtt
      781 gaagccttaa acaccaaatc gacttcgtat gtgctacgta cacccgacat taggaatgta
      841 caggtcataa ccaagcaggc atctaccgag atacacaaaa aagtgattga aatcagggat
      901 gaaatccagg ataccctgga tgcgctgatg aaaccattca acacgctgaa tcctaccctc
      961 tacggacaat atataaatgc ccgcaccatt gtggaaattg cggccacaca aagtaaaaag
     1021 gcggaagatc ctcaagctga tgcagagaag gaatcggcct gatgccattg tatacccctg
     1081 gtagctttaa taaagctgcc ggggatattt attcgcctct ctaatgaaaa tacattgtct
     1141 taaattaacg tgagttcgat ataagaaata tcattacaat cttacaaaat gccgacaatc
     1201 agttttaaac aaataaaata gttcggtgct ctgcaccttt aattgtgtat ttatggaaat
     1261 atactacaaa tagtacggga cgctgtccct aaagaaggtg cagagcacca tgctatttgt
     1321 agggtttgga ttaaacgaaa ataaaaaggt gcagagcacc gtgatattca ttcgattatg
     1381 aaaataatgt ttgcctgctt atatcgaact cacgttaaat taagctgtta caaccactaa
     1441 aaaaaattaa tgttatgatt acaattgatc aattgagaag tgttatgaaa tttcaactca
     1501 ataattttaa taacgaaggt gtaagtattg atgacagtac tattcatagt actgtactta
     1561 gtgaagacga tggtttttca catgtcaatt ctgttcaaat gtacaaagat gtgattcgtt
     1621 ttaccttgct gaaacaggga catacactca agaaatggcc ggcttattgg ctaagtttat
     1681 cagtttttga tttgtcaaac caaataattt aaagcaatga gacgcctgta tataaatttc
     1741 ttgtttatgt cattcgtagc attactatat gctcaagatg gctctatgtc agttggtttt
     1801 gttcaaacca cccttgagaa aaatgctgta aatttcgcag ttgattatgt aaaaaaactt
     1861 cagccaagct tagagctatt taaaacagga agtaatagtt tgtattcttt taccccggac
     1921 ataaaaatat tggtaggctc tggtgatgtt tttaatggca taacggctaa atatgttggt
     1981 aatataatgg ttttcaatac aac
//
LOCUS       DATDNM010000353         6109 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_685702, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000353 DATDNM010000000
VERSION     DATDNM010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6109
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_685702"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(250..1437)
                     /locus_tag="VI413_05850"
     CDS             complement(250..1437)
                     /locus_tag="VI413_05850"
                     /inference="COORDINATES: protein motif:HMM:NF027479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4861 domain-containing protein"
                     /protein_id="HEY6914182.1"
                     /translation="MKTKLLLAFAVFATTLSATSVNIKVTNPNKAALKNAPVVVVLDK
                     YKAIPAKERASLAVLVNGKQISSQLDDLNKDGLADEFVFLLDLKAGQTVPVLLKTIPA
                     NKRDSFPTEVYADLISKPKGGEMKFVQEMSSTKNDMYNQMHHHGVAFESALIGYRIYF
                     DNKSTIDLYGKKKQQLELATTGWYPTDEQAAAGYGDDVLRVFDAVGVGTVKGWNGTKA
                     THIDKFDKRTQRIVATGNLRTVVESEVEGWQYEGKKINMTVRYILYARHRDGICEVRA
                     SEDIANLATGVETIKGGPTMSDKKGLVGSWGTDYPVTDTVKYEKQTVGLGVFVPQPYA
                     TKQVVEGLNNLVLMPYKKGETLRFYFTAAARKEEKNPFTTPEQFFAYLRNWKGASEPI
                     IVK"
     gene            complement(1562..2815)
                     /locus_tag="VI413_05855"
     CDS             complement(1562..2815)
                     /locus_tag="VI413_05855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="pectate lyase"
                     /protein_id="HEY6914183.1"
                     /translation="MKRATSFLVLLFSINFLSAQQLAFPGADGFGKYAKGGRSCEVYH
                     VTNLNDSGVGSFRDAVSQPKRTVVFDVNGVIKLQSRLSVASFITIAGQTSPADGIVVY
                     GNGVSFTGSNDVIVRYIRFRGSVNMGRGVCTVSADNAKDIIFDHVSIEWGRWDNLHIK
                     ESKDITIQYSIIGEGINPQMFGALLENPTNLTIHHCLWVDNQSRNPKAKAGIEIINNV
                     IYNWGSNGLVGGHSAADHFQDIINNYFIAGPNSSKTFIGMFSATDHVYHKGNLVDMNK
                     DGKLNGQAATEEDFVKTGATLVEKAQYSSLSLSGIEAPKEAYKKVVEQAGASLHRDEI
                     DKRLVGYVKSLGKKGKVIKAEAEVGGQPELKTGKAPKDNDGDGIPDNWEAKHHMNATN
                     ASDATIINQNGYSNLEEYLNELVTR"
     gene            complement(3073..3552)
                     /locus_tag="VI413_05860"
     CDS             complement(3073..3552)
                     /locus_tag="VI413_05860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914184.1"
                     /translation="MKTKSFIIAISLLLALGLSFPLEVLANGHRPPAWAPAHGFRAHT
                     RQVYFPKYNCYYDIERGTYIYINNGRWTVSVDLPIRFRPEYFRNTSYVELNINSRYPH
                     YFNAEHRAKYNVNNNYYNRNGRYYENNRYYKDEDRGRIKQNKHWNKEKNKKGHHGHD"
     gene            complement(3780..4163)
                     /locus_tag="VI413_05865"
     CDS             complement(3780..4163)
                     /locus_tag="VI413_05865"
                     /inference="COORDINATES: protein motif:HMM:NF022443.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2809 domain-containing protein"
                     /protein_id="HEY6914185.1"
                     /translation="MKRNRLIYLGTVIATITLGLLSRRFSHYLPEIINSYLGDALWAL
                     MIFQFVAMVFPTRKTFQIAFFSLIFCYLIEISQLYHAPWIDAVRNTRLGGLVLGFGFL
                     WTDIIAYSFGIGFGTLVEKIVFKTE"
     gene            complement(4178..4798)
                     /locus_tag="VI413_05870"
     CDS             complement(4178..4798)
                     /locus_tag="VI413_05870"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6914186.1"
                     /translation="MENIKKITLIVIFAFIGTFAMAQSQTVMQAAFAKSYESEQAGKY
                     TTAINDLKPVYKADGYFVNIRMGWLYYLAKQYAESIKYYNIAIALKPYAIEARFGCVK
                     PLSAIESWENVKRHYMQILKIDPQNTLANYWLGVIYYNRKSYAAAEKLFEKVVNLYPL
                     DYDSIIMLAWTKLNLGKSSDAKVLFYQALVIRPNDSSALTGIKQLR"
     gene            complement(4786..6036)
                     /locus_tag="VI413_05875"
     CDS             complement(4786..6036)
                     /locus_tag="VI413_05875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914187.1"
                     /translation="MHKLLIFVLLFVSFAVKAQDSHYDLRVDSVTYQYYLNADWDNLI
                     DTAKQAIKDSVDFKFLRQRLGYAYFAKGNYYASQQQYEKALAFDMGDIDTRIYLYYCG
                     LYTCNEATTRYRAGQLTNELKQSFGIKPFRILNSVDLEYSYKTNDNATRGNPGFCRVG
                     INSLLGYRLNLYQSFSTYAQVNKATYLSGGLFNVRTDDSTSIRQNEYFALLDWTVTTH
                     ISINIGYHYLGLNIFNNATDTYQVSNNQQFRTVRSSTQNMPGNLFCSKLSFSLNRFDF
                     ALTGSILSYDSILTQQYGVHAGVVLPGKLNFYLKSSLYGMLDPNINRLIFSQTAGALL
                     FKKLGVEGNITWGNLNNFTDNNGLYIYNSLDPTTFRTGLTAYWYLLPKISLFGNYTYD
                     TKLIEENNTNYNQHSFSCGIIWKI"
BASE COUNT         1682 a         1245 c         1235 g         1947 t
ORIGIN      
        1 atcccgaggt ggtaatgaac aacaaggcag ctaaatgccc gaaatgcgga atggctttgg
       61 tagaaaaaaa ggaaaaggtg atgaaaaaaa tgaatcaaat gaaggtcaca aaagattcaa
      121 cgaagacaac acattccaaa atgatgaaag aaacacctat gaaataatgg ttagttattg
      181 gaaataaaaa aaatgagagc cccgaatcaa tcggggctct catttttttt attttttctt
      241 tgtaaggaac tattttacta ttatcggttc cgaagctccc ttccagtttc ggaggtaggc
      301 aaaaaactgt tcgggcgttg taaatgggtt tttttcttct ttgcgggctg cggcggtgaa
      361 gtaaaaacgc agtgtttcgc ctttcttgta aggcatcagc accaggttat tcaatccttc
      421 caccacttgt ttggttgcat acggttgcgg aacaaatact cccaacccga cagtttgttt
      481 ttcgtattta accgtgtcgg ttaccggata atccgttccc caagaaccca cgagcccttt
      541 tttgtcgctc atggtcgggc cgcctttaat agtttcgact cccgtagcca ggttggcgat
      601 atcttccgag gcacgtacct cgcaaattcc gtcgcgatgg cgggcataca ggatataacg
      661 cactgtcata ttgatttttt tgccttcgta ttgccagcct tccacttcgc tttctaccac
      721 ggtgcgtagg tttccggtgg ctacaatgcg ttgtgtacgt ttgtcgaatt tatcaatgtg
      781 agttgctttt gtgccattcc agcctttcac tgttccaaca cccactgcat cgaaaacgcg
      841 caatacatca tcgccatatc cggcagctgc ttgctcatcg gtaggatacc agccggtggt
      901 agccagttcc agttgttgtt tctttttacc gtaaaggtca atggtgcttt tgttgtcgaa
      961 atagatgcga taaccaatca aagcagattc gaatgctacg ccatgatgat gcatttggtt
     1021 gtacatgtcg tttttcgtgg acgacatttc ctgtacaaat ttcatttctc cgccttttgg
     1081 tttcgaaatc aggtcggcat acacttcagt cgggaaactg tcgcgcttat tggcaggaat
     1141 tgttttcaat aataccggca ctgtttgccc cgcttttaag tccagcagaa aaacaaattc
     1201 atcggccagc ccatctttat ttaggtcgtc gagttggctg ctaatctgtt tgccattaac
     1261 caatacggct aaactggcac gctcctttgc agggatagct ttgtatttat ccaatacaac
     1321 taccacaggc gcgtttttca gcgctgcttt gtttgggttg gttactttta tgttcacgct
     1381 tgtggccgaa agagtagtag cgaatactgc aaaagccagt aatagttttg ttttcatctg
     1441 tctctgtgta aatttcgttt tgtttttttt gtagctcaaa aatacttgaa attggtttag
     1501 tcaccgtgtt tttttttgat ttaatttatg catttattga caattgccaa ggcagataaa
     1561 tttatcgggt aaccagttcg ttcagatatt cttccagatt gctgtagccg ttttgattaa
     1621 taatagttgc atcactggca ttggttgcat tcatgtgatg ctttgcttcc cagttgtccg
     1681 gaattccgtc accatcgttg tctttcgggg cttttcctgt tttaagttcc ggttgtccgc
     1741 caacttcggc ttcagcttta atcactttcc cttttttgcc cagcgatttt acgtaaccga
     1801 ccagtcgttt gtcaatttca tcgcgatgca acgaagctcc agcctgttcc actacttttt
     1861 tgtatgcttc tttgggggct tcgatacctg ataaagaaag tgaagaatat tgtgcttttt
     1921 caacaagtgt tgctccggtt tttacgaaat cttcctcagt ggccgcttgt ccgttgagtt
     1981 ttccgtcttt attcatatct accagattgc ctttgtggta aacatgatcg gtagcactaa
     2041 acatgcctat aaatgttttg ctggaatttg gtccggcaat gaaataattg ttgataatgt
     2101 cctgaaaatg atcggctgct gaatggccgc caaccaaacc gttgcttccc caattgtaga
     2161 ttacgttatt aataatttcg atacctgctt ttgcctttgg attgcggctt tggttatcta
     2221 cccacaagca gtgatgaatg gtcaggtttg tagggttttc gagcaaagca ccaaacattt
     2281 gcggattgat gccttcacca atgatactgt attgaattgt aatgtcttta ctttccttga
     2341 tgtgaaggtt atcccagcgt ccccattcga tggaaacatg gtcaaagatg atatctttgg
     2401 cattatcagc cgatactgta cacactcccc gccccatatt tacgctgcct ctgaaccgga
     2461 tatagcggac aataacatca ttggagccgg taaatgaaac accgtttcca taaacaacaa
     2521 taccatcggc cggagacgtt tgacctgcaa tagtaataaa tgaagctacc gaaagcctgc
     2581 tttgcagctt gataactcca tttacatcaa ataccaccgt gcgtttaggc tggcttacag
     2641 catcgcggaa tgaaccaaca cccgagtcat tcaggttggt aacatgataa acctcgcagc
     2701 tgcgtccgcc ttttgcatat ttcccaaaac catcagcacc ggggaatgca agttgctgtg
     2761 ccgataaaaa gttgatacta aataataaaa ccagaaatga agtagctcgt ttcataataa
     2821 ttgtgtgttt tcttcagcga atgaagaaca aataaattga ttgaaggatg tgtgaaataa
     2881 taaatacgaa cagttttgac ttgatttgga gagaatggtt taaattactg attgtattta
     2941 gtaaaatgac tggagtaggg gagatttgta ctcacaatct ttttcttgta aatggaattg
     3001 gcttttaaac aaacaactcc tgcaggaata aacatgcagg agttgttcgt ttaatctgaa
     3061 ataacatggt tattaatcgt gaccatgatg gcctttttta tttttttctt tgttccaatg
     3121 tttgttttgc tttatccggc ctctgtcttc atctttgtaa taacgattgt tttcgtaata
     3181 tctgccgttt ctgttataat agttattatt tacattatac tttgccctgt gttctgcatt
     3241 gaagtaatgc gggtaacggg agttaatgtt aagttctaca tacgacgtat ttcgaaaata
     3301 ttccggcctg aaacggattg gcaaatctac acttacggtc catctaccgt tattgatata
     3361 aatgtatgta ccacgttcaa tgtcgtaata gcaattatac tttggaaaat aaacctgccg
     3421 ggtgtgagcc ctgaaaccgt gagctggcgc ccatgccggc ggccggtgcc catttgctaa
     3481 aacttcaagc ggaaagctta aaccaagtgc taataacaag ctgatagcta taataaatga
     3541 tttagttttc atgatgaata aatttatgaa ttagaaataa attgaatgct ctatgtcttc
     3601 tgtaaatcaa ttttcgtgcc acaggaaacc cgtttttgca acttgatttt atactcacat
     3661 agcattaacg caaaactaat acaacaatta catggatagt tgatttttaa actaaagttt
     3721 cttaatgagg atgttagctc tcaaagtggg gtgggaaatg ctttgaaatt tgaaattagt
     3781 tattctgttt tgaacacaat tttttcaacc aatgtgccaa acccaattcc aaagctgtag
     3841 gcgattatat ctgtccacaa aaatccgaaa ccaagcacca aaccacctaa acgggtgttt
     3901 ctgacggcat caatccatgg cgcgtgataa agctgggaaa tttcaatcag gtagcagaaa
     3961 atcagactga aaaatgctat ttggaaggtc ttacgggtgg gaaacaccat ggccacaaac
     4021 tgaaaaatca tcagtgccca caaggcatca cccaggtagg aatttataat ctctggcaaa
     4081 taatgactga accggcgcga aagcaacccc aatgttatag tggcaatgac agtgccgagg
     4141 tagataagtc ggtttcgttt cataggaaag ggatgtatta tctcaattgc ttgattcctg
     4201 taagtgccga actgtcattc ggacggataa ccaatgcctg atagaacagc actttggcat
     4261 cggatgattt ccccagattc agtttagtcc atgccagcat tataatggaa tcataatcga
     4321 gcgggtagag gttcactact ttttcaaaaa gcttttcggc tgcggcataa cttttccggt
     4381 tgtagtaaat cactcccaac cagtaattag cgagtgtatt ttgcggatcg attttcagaa
     4441 tctgcatata gtgccttttt acattttccc aactttcgat ggcgctcaat ggtttcacac
     4501 aaccaaaccg tgcctcaata gcgtaaggtt tcagggcaat ggctatatta taatatttga
     4561 tggattcagc atattgctta gccagataat acagccaacc catgcggatg ttcacaaaat
     4621 aaccatctgc tttataaacc ggttttaaat cattgattgc agtggtatat ttcccggctt
     4681 gttccgattc atagcttttt gcaaaagccg cttgcataac cgtttgactt tgagccattg
     4741 caaaggttcc gataaaggca aaaatcacaa taagtgtaat tttttttata ttttccatat
     4801 tattccacat gaaaatgaat gttgattata attggtatta ttctcttcta taagttttgt
     4861 atcgtaagtg tagtttccaa ataacgaaat tttcggaagc agataccagt atgcggttag
     4921 tcctgtccga aatgtagttg gatccagcga attataaata tataacccat tattatcggt
     4981 aaaattgttc aggtttcccc atgttatatt tccttctact ccaagtttct taaataaaag
     5041 tgcaccggcc gtttgggaaa aaatcagacg gttaatattc gggtccaaca tgccgtaaag
     5101 cgaacttttc aggtagaaat ttaatttccc gggcagcact actccggcat gaactccgta
     5161 ttgttgtgtc agtatactgt cataacttaa tatcgaacca gtcagcgcaa agtcgaagcg
     5221 attcagggaa aacgaaagtt tcgagcaaaa taaattgccc ggcatatttt gtgtcgagct
     5281 cctcactgtc ctaaattgct gattattgct tacctgatat gtatctgttg cgttgttaaa
     5341 tatatttaga cctaaataat gataaccaat attgatactg atatgcgtag tgacggtcca
     5401 gtccagaagg gcaaagtatt cattttgcct gattgatgtt gaatcgtccg tgcgaacatt
     5461 aaacaatcct cctgataaat aagtcgcctt gtttacctgg gcataagttg agaaagactg
     5521 atatagattc agccggtatc ccaacaggga atttattcct accctgcaaa aaccaggatt
     5581 gcctcgtgtt gcgttgtcat ttgttttgta gctgtattcc aaatcaacag aattgagtat
     5641 ccggaatggt tttattccga aactttgttt caattcgtta gtcaactggc cagccctgta
     5701 gcgcgtagtt gcttcgttgc aagtatacaa cccgcaataa tacaggtata tgcgtgtgtc
     5761 aatatccccc atgtcgaatg ccagtgcttt ttcgtattgc tgttgcgagg cataataatt
     5821 tccctttgca aaataggcat atcccagccg ttgcctcagg aatttaaagt cgacgctgtc
     5881 tttaattgct tgctttgctg tgtcaatcag attatcccaa tctgcattca ggtagtattg
     5941 ataggttaca gaatctactc tcaggtcgta atgagaatcc tgcgctttta cagcaaacga
     6001 aacgaacaga agtacaaaaa ttaagagttt atgcatgtgg ctgtaatttt tgttttagct
     6061 ccttcgtagc aaaatcctgc tatagaatta tcttttattg tcagggtgc
//
LOCUS       DATDNM010000354         3427 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2075006, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000354 DATDNM010000000
VERSION     DATDNM010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3427
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2075006"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..974
                     /locus_tag="VI413_05880"
     CDS             <1..974
                     /locus_tag="VI413_05880"
                     /inference="COORDINATES: protein motif:HMM:NF022720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3078 domain-containing protein"
                     /protein_id="HEY6914188.1"
                     /translation="KAADVYVMSYDELPDPNGTKSLMLAGKSIRDIKFVDDNQLENAT
                     NRKLIVKKEQLGPWLRKANSLLQFSQNLASDNWYQGGSSTMSVLGMLTGQLNYDNKKN
                     IQWENYGEWRMGFNSVFNDSTALRAVNTNDDIFKINSKLGIKASGNFYYSGSVDFSTQ
                     FLKNFKSVSSKELKSTFLTPVRLNIGMGLDYKYKKLFSLMFAPVSYKYIYIQETDPKK
                     INPNLFGIKKDENHLSEIGSSFKAQFSYSPFRELQVDSRLNFYTNYEKVEIDWEIVGN
                     FSINRHLSTRLSLNPRYDNTVIMAKGDKAKLQFKELLSFGFSYKLLN"
     gene            complement(982..1518)
                     /locus_tag="VI413_05885"
     CDS             complement(982..1518)
                     /locus_tag="VI413_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HEY6914189.1"
                     /translation="MNAYDIIKKYYTEGSPLYKILVQHSEHVKEKALEVAYRHPELHL
                     DETFIAEACMLHDIGIFMCDSPKIQCYGTRQYVEHGYLGAHIITLEGLPRHALVCERH
                     TGTGLSLETIIKRELPLPHRDMIPVSLEEQVICYADKFFSKSKLSTPHTLDHIREILN
                     RHGEDESAKFFEWHKQFK"
     gene            1677..2243
                     /locus_tag="VI413_05890"
     CDS             1677..2243
                     /locus_tag="VI413_05890"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019130213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEY6914190.1"
                     /translation="MNEKLNSDCNWPGEDTLMRRYHDEEWGVPLHDDRKIFEFMVLDA
                     FQAGLSWRTVLYKRENFRRAFDNFEVEKVSLFTEEKIQELMQDASIIRNQAKIRATVI
                     NAQAFMKVQAEFGTFDKYIWQFTGGKPILNHPTCNAEIPAKSAESDAMSKDLLKRGFK
                     FVGSTICYAFMQAAGMVNDHLEGCTKKG"
     gene            complement(2213..>3427)
                     /locus_tag="VI413_05895"
     CDS             complement(2213..>3427)
                     /locus_tag="VI413_05895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914191.1"
                     /translation="AQQPTDTNQQDYEFHVKMFQSILKSALREQVRLIKDVPLSETLY
                     LTEEFYRLVLEISAQYRQLLKIIDIPSIDKSLREYFLFGDEFMSNVIEFQTFRLMDRL
                     KKKDPQIFELVKKDLQEIISLEIAYRQRMGYLLVEKNAEKNNHELVNRLSLLKKYIES
                     HLYLNIDKRKDGVLVEQFLFSLAAGISMIFATGIAFSIQQRYGSFTMPLFVALVISYM
                     LKDRIKEMTRFYFAHKMGTRYFDHKATMNINQTDIGWAKESMDFVSETKLPPAIVKAR
                     NCTSIIEANNRANSEKVLLYRMQMHMDREKLNTNSEFSTDGINSIIRFNFSEFIRNMD
                     NPEFALYYPDETEGFEVIEGEKLYYLNFIIEKKNDTQNETKRYRIALNRNGIKKIQKF
                     ESDQPFLVQPSK"
BASE COUNT          978 a          648 c          741 g         1060 t
ORIGIN      
        1 gaaaagctgc cgacgtttat gtaatgtcgt atgacgaatt gcctgacccc aatggaacaa
       61 aaagtcttat gttggcaggt aaatctataa gggacataaa atttgtagat gataatcagt
      121 tagaaaatgc cactaataga aaattgatag ttaagaagga acaactcggt ccgtggctcc
      181 ggaaagcaaa ttcattgctt cagttttctc agaatctggc ttccgacaac tggtatcagg
      241 gtggcagcag taccatgtcg gtgttaggca tgctgaccgg tcagctcaac tacgataata
      301 agaagaatat tcaatgggaa aattatggtg aatggcgaat gggttttaat tcggtgttta
      361 acgatagtac agccctcagg gcagtaaaca caaatgatga tatattcaag ataaacagta
      421 agcttggcat aaaagcaagt ggaaatttct actatagtgg atccgttgat ttttcaaccc
      481 agtttttaaa aaatttcaaa tcagtaagtt ctaaagagct taaatcaacg tttctaactc
      541 cggtccgttt gaatataggg atgggacttg attataaata taagaaattg ttctctttaa
      601 tgtttgctcc tgtttcctac aaatatattt atattcagga aacagatcca aaaaagataa
      661 acccaaatct ctttggtata aaaaaagatg aaaatcattt aagcgaaatt ggtagctcat
      721 tcaaagcaca attttcgtat tctccgtttc gtgaattgca ggttgattcc cgtttgaatt
      781 tctataccaa ctacgaaaag gtggaaattg attgggaaat tgtgggcaac ttcagcatta
      841 accgccattt gtcaacccgt ctttcactca acccacgata tgataataca gttatcatgg
      901 ctaaaggcga taaagcaaag ctacaattta aagagttgct cagtttcggg ttttcgtata
      961 aattgttgaa ttaagcaatt cttatttgaa ctgcttatgc cattcgaaga actttgccga
     1021 ctcatcttcg ccgtgccggt ttagtatctc gcggatgtga tcaagggtat gcggagttga
     1081 caactttgac ttagagaaaa acttgtcggc atagcagatc acctgttctt ccagcgaaac
     1141 cggtatcata tcccggtggg gcaggggcaa ctctctttta atgatggttt cgagcgaaag
     1201 ccccgtgcct gtatggcgct cgcaaaccag cgcatggcgt ggcaaacctt ccaaagtgat
     1261 aatatgggct cccaaataac cgtgttccac atattgtctg gttccgtaac attgaatttt
     1321 aggcgaatcg cacataaaaa tcccaatgtc gtgtagcatg caggcttcag caataaatgt
     1381 ttcatcaaga tgtaactcgg ggtgtctgta agcaacttcc aatgcttttt ctttcacgtg
     1441 ttcgctgtgt tgaaccagga ttttataaag cggactacct tccgtgtaat atttctttat
     1501 tatatcgtat gcattaatca tggtttctga atttgaattt ttgaagaaca aagttacaac
     1561 aatttgcaaa caaaaagggt gaccggctcg atgcaatttc tttaggatat tttgtatttt
     1621 tgcaaaatgg gacttgtttt ggtcttgttt taatgtaata actataataa atcaatatga
     1681 acgaaaaact gaattccgat tgcaactggc cgggcgaaga tacgctgatg cgccgatacc
     1741 atgatgagga atggggtgtg ccgcttcacg acgaccgcaa gatcttcgaa tttatggtgc
     1801 tcgatgcctt tcaggcaggg cttagctgga ggacggtgtt atataagcgc gagaattttc
     1861 gtcgtgcttt cgacaatttt gaggtagaga aggtgtcttt gtttactgaa gaaaagattc
     1921 aggaattaat gcaggatgct tccattattc gcaatcaggc caaaataaga gctacggtga
     1981 taaatgcgca ggcgtttatg aaagtgcagg ccgaattcgg aacgtttgat aaatatatat
     2041 ggcaatttac aggaggaaaa ccgatactca atcacccgac ctgcaacgct gaaattccgg
     2101 caaagtcagc agagtcagat gccatgagca aagatttact caagcgcggt ttcaagtttg
     2161 taggttccac catttgctat gcttttatgc aggctgccgg catggtgaac gatcatttgg
     2221 aaggttgcac taagaaaggc tgatccgatt caaatttctg aattttcttt attccattcc
     2281 ggttcaatgc aattcgatag cgctttgttt cgttttgtgt atcgtttttc ttttctataa
     2341 taaagttcag ataatatagc ttttcacctt caataacttc aaaaccttca gtttcgtcag
     2401 ggtaataaag tgcaaattcg gggttgtcca tattgcggat aaattccgaa aagttgaacc
     2461 ggataatgga gtttataccg tcggtgctga attcgctgtt tgtgtttagt ttttcccggt
     2521 ccatgtgcat ttgcatacgg taaagcaaca ccttttcgct gttggcgcgg ttgttggctt
     2581 caataattga tgtgcaattt cgcgctttta caatggccgg cggaagtttg gtttccgaaa
     2641 caaaatccat actttctttg gcccatccaa tatcggtttg gtttatgttc atggtggctt
     2701 tgtggtcgaa atagcgcgta cccattttgt gggcaaagta aaaacgtgtc atttccttaa
     2761 tccggtcttt cagcatgtag cttattacca atgccacgaa caaaggcatg gtaaaactgc
     2821 cgtatcgttg ctggatggaa aatgcaattc ccgtggcaaa aatcatagaa atacctgctg
     2881 ccaggctgaa cagaaactgt tctactaaca ccccatcttt acgtttgtcg atattcagat
     2941 ataaatggct ttcgatgtat tttttgagca aactcaggcg gtttacaagt tcgtgattgt
     3001 ttttctcagc gtttttttct accaacaggt aacccattcg ttggcggtat gcaatttcca
     3061 aacttataat ttcctgcaaa tcctttttta caagttcaaa tatctgtgga tccttctttt
     3121 tcagcctgtc catgagtcgg aaagtctgga attcaatcac gttactcata aattcatcgc
     3181 caaacaagaa gtactcgcga agcgatttgt cgatagaagg aatgtctatt attttcagga
     3241 gttggcggta ttgggctgaa atttcgagaa ccaagcggta aaattcttca gtgaggtaga
     3301 gcgtttccga aagcggaacg tcttttatca gcctgacttg ctcccgcagt gcgcttttca
     3361 ggatggactg aaacattttt acatgaaatt cgtagtcttg ctgattcgtg tcggtaggtt
     3421 gttgagc
//
LOCUS       DATDNM010000355         3011 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1006307, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000355 DATDNM010000000
VERSION     DATDNM010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1006307"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..570)
                     /locus_tag="VI413_05900"
     CDS             complement(<1..570)
                     /locus_tag="VI413_05900"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6914192.1"
                     /translation="MEKIIIIGGVAAGATAAAKVRRISPDAQITMIEAGPDISFANCG
                     LPYYIGGDIKSRSKLILQSPESFNEQYKVEVHTHTIVSAIDRTAHTLKAMDIRSGEQK
                     SFEYTKLILAQGGRPIKPTLPGADLEHVFTLWTLEDMDNIARHLDEKKPKNAVVVGGG
                     FIGLEMVEALTKRGLNVNVVEMMPHVMAIM"
     gene            complement(852..1238)
                     /locus_tag="VI413_05905"
     CDS             complement(852..1238)
                     /locus_tag="VI413_05905"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY6914193.1"
                     /translation="MKLKILLPTVMLMLASFATVTAQKTQLSSPEIKEVLKKNKSIVI
                     LDVRTAEEFAAGHLKGAQNIDIRQPDAYSKLDKLNHQASYLVYCRTNHRSGIAADYMV
                     QKGFKNIYQMMDGFPGWAANNFAYEK"
     gene            complement(1265..1468)
                     /locus_tag="VI413_05910"
     CDS             complement(1265..1468)
                     /locus_tag="VI413_05910"
                     /inference="COORDINATES: protein motif:HMM:NF022577.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2892 domain-containing protein"
                     /protein_id="HEY6914194.1"
                     /translation="MKRNVGIIDRVIRIMVALVIIGLSVANIISGTLAIVLIVLAGVF
                     ILTGFLRFCPLYLPFGINTWMKK"
     gene            complement(1548..2816)
                     /locus_tag="VI413_05915"
     CDS             complement(1548..2816)
                     /locus_tag="VI413_05915"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6914195.1"
                     /translation="MKEINAEEFEKEVLNGGKVVLDFYSTECPPCEALAPKFEAMAEL
                     YGEKIKFLKIFRQGSRELATQLGVSSSPTLLFFDNGKQIVDAISGGIKKSEIIERLDQ
                     MLTLEEVAAIKANQKPIVSESDVAILGGGPAGLTAGIYLGQAKIKTILIDPALPGGYM
                     GITHQVSNYPGFEQPQPGFMLAHYMSEQAKHTGIDFKVAVDITSVDLLKKEIVIDELE
                     TIRAKKIIIGTGTTPNTMNAPGEKEYKGKGISYCATCDAKYFVDKEVTVIGGGNSAVE
                     EALFITKFASKVTMIHQFDKLTANQTAVEQLQANDKIRVMYEHEPRNFEKRGGTMITS
                     IENLKTKEVKVLESDGVFVFVGFKSNVSVLGEMLPEMDKWGYIKTNEDMQTNLPDIYA
                     VGDIVSKKYRQITTAVADGTVAAIAISKEL"
BASE COUNT          896 a          674 c          483 g          958 t
ORIGIN      
        1 cataatagcc atcacatgag gcatcatttc caccacattc acgttcagac cccgtttggt
       61 aagtgcctcc accatttcga gcccgataaa accaccacct acaacaactg catttttcgg
      121 tttcttttca tccaaatgac gggcaatgtt atccatatct tcgagcgtcc acaacgtgaa
      181 aacatgctcc aaatcagctc cgggcagagt tggtttaatc ggacggccac cttgcgccag
      241 aataagcttg gtatattcaa acgatttttg ctcaccgcta cggatatcca tagctttcag
      301 agtatgagct gttctgtcga tagcagaaac gatggtatgc gtatgaacct caactttgta
      361 ttgctcgtta aagctctccg ggctttgcaa aatcaactta gaacggcttt taatgtcgcc
      421 gccaatgtaa taaggcaatc cgcagttagc gaatgaaata tccggccctg cttcaatcat
      481 ggttatctgc gcatcaggcg aaatacgacg aactttggca gccgctgttg ctcctgccgc
      541 aactcctccg ataatgataa tcttttccat atattttttt gaatttattt cttattttta
      601 aatcacagta caaaggtaaa acaatctttt tgaattacaa tagtatcact aataaatcac
      661 tttaatatca ctattatttt tttatatctt agaagaacac aaataataca ttgagatata
      721 aagagatata aagagataaa aacaactatg tcagataaat gtttcgtaat gcaaagaatg
      781 aattctgtga aactaaaaca gccgattttc acgattgaaa atcagctgtt tggaggtatt
      841 attttttccc cttatttctc gtaagcaaaa ttgttggctg cccaacccgg aaaaccatcc
      901 atcatttgat atatattttt aaaacccttc tgcaccatgt aatcagcggc aattccactg
      961 cgatgatttg tacggcaata tacgagataa gaagcttgat ggtttagttt atcaagctta
     1021 gaatacgcat caggctgacg gatatcaatg ttctgagcac cttttaaatg ccctgcagca
     1081 aattcttcgg ctgtccgcac atccagaatg acgatagatt tgttcttttt caacacttcc
     1141 ttgatttcag gagaactgag ctgtgttttt tgagctgtaa cagttgcaaa tgaagccaac
     1201 atcaacatca ctgttggcaa taaaattttt aatttcataa atttctgatt ttactggttt
     1261 acaattattt tttcatccat gtatttattc caaaaggcaa ataaagaggg caaaaacgta
     1321 aaaaaccagt gagtataaaa actccagcca atacgattaa cactatggct aacgttcctg
     1381 aaatgatatt tgccacagac aatccgataa taaccaaagc aaccataatt cggattactc
     1441 tgtcaataat tcctacattt cgtttcatat tcttgaattt ttaaattgtt tcatattatt
     1501 tacttcaaac tcttcaaaag cacagaagca tgaaaaagtt gattggttta taattccttc
     1561 gaaatcgcaa ttgcagcaac cgttccatca gccacagccg ttgtaatctg gcggtacttt
     1621 ttgcttacaa tatcaccaac cgcataaata tcaggcaaat tggtctgcat atcttcgttg
     1681 gtttttatat acccccattt atccatttca gggagcattt ctcccaacac cgaaacattt
     1741 gatttaaaac cgacaaagac gaaaacacca tccgactcca gtacttttac ctctttggtt
     1801 ttcaaatttt caatagatgt aatcattgtt ccaccccgct tttcaaaatt acgtggttcg
     1861 tgttcataca tgaccctaat tttatcattt gcctgtaatt gctcaacagc tgtctgatta
     1921 gcggttaact tatcaaactg atgaatcatt gtcactttac tggcaaattt agtaataaac
     1981 agtgcttctt ctacggccga gtttccacct ccaataactg tcacttcctt atctacaaag
     2041 tatttggcat cgcaggtagc acaatatgaa attcccttgc ctttatattc tttttcacca
     2101 ggggcattca ttgtattcgg agttgtaccc gttccaatta ttattttctt agcacgaata
     2161 gtttccagct cgtcaatcac aatttctttc ttcagtaaat ccaccgaagt aatatctaca
     2221 gccactttaa aatcaattcc ggtatgcttg gcttgttcgc tcatataatg cgccaacata
     2281 aatccgggtt gaggctgttc aaaacccggg taattagaaa cctgatgcgt aatacccatg
     2341 tatccgcccg gaagagctgg atcaatcaat atcgttttta ttttagcctg gccaagataa
     2401 atgccggcag ttagtccggc aggtccgcca cctaaaatag ccacatcaga ctccgaaaca
     2461 attggttttt ggtttgcttt tatagctgcc acttcttcca aagtcaacat ttggtctaac
     2521 cgctcaataa tttccgattt tttgatacca ccactgatgg cgtcaacaat ttgtttgcca
     2581 ttatcaaaaa ataaaagagt tggcgacgaa ctcacgccca gttgagtggc cagttcacgg
     2641 cttccctgac gaaaaatctt caggaatttg atcttctcgc cgtaaagttc agccatagct
     2701 tcaaatttcg gtgccaaagc ctcacaaggc ggacattcgg ttgaataaaa gtcaagaacg
     2761 actttaccgc catttaacac ctctttttca aattcttctg cattaatttc tttcataatt
     2821 ttaaatttga tatatgttca tttattcata tattatctct ttttaaagga caagtcacga
     2881 cctgtcctta tcatatcaac gattcagata atatgctgct cccaatgata ataattcctt
     2941 caccggacgg caatctggcg tatttggatg accatttttg tttttagcta ccgaagcaca
     3001 tcctccacca c
//
LOCUS       DATDNM010000356         2471 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_152630, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000356 DATDNM010000000
VERSION     DATDNM010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152630"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VI413_05920"
     CDS             <1..193
                     /locus_tag="VI413_05920"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEY6914196.1"
                     /translation="GGRSLGKIITKTKVITVDGDKPDFKTFLIRALCRFIPLESFSFL
                     GSTDSGWHDSISRTRVVRI"
     gene            301..453
                     /locus_tag="VI413_05925"
     CDS             301..453
                     /locus_tag="VI413_05925"
                     /inference="COORDINATES: protein motif:HMM:NF013814.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HEY6914197.1"
                     /translation="MSIFRVILCIVFPPLAILDKGCGSVLLVFILTCCGWIPGVIAAL
                     IINNKK"
     gene            470..1012
                     /locus_tag="VI413_05930"
     CDS             470..1012
                     /locus_tag="VI413_05930"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HEY6914198.1"
                     /translation="MSKALILIDIQNDYFENGANTLIGSETASENARLLLNEFRKKQL
                     PVIHIQHLSLRAGSTFFIPHTIGAEIHANVAPMDNEKVFAKHSPNSFIETGLHEYLSA
                     LHVSELVICGMMTHMCVDATIRAAKDFGYICTLIGDACATKNLQINGLQVAAQDVQNS
                     FLAALNYFYADVTTVQDYLA"
     gene            1136..2404
                     /locus_tag="VI413_05935"
     CDS             1136..2404
                     /locus_tag="VI413_05935"
                     /inference="COORDINATES: protein motif:HMM:NF021427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEY6914199.1"
                     /translation="MKNNTQIKCPNCGTSIDVQDILAHQLEDEINLKYQSQLAEERKK
                     FDAEFESLNKAKEQFEQKKKQENELFQERLEKQLKEDRKGMEEKLKVKLQEEQLEQFN
                     ALQKELNEKSEQVKELNRTKAEIEKLKREKSELKEVAEAEAQKKLSETLITEKEKIRK
                     QEEEKNELRFKELQMQLEAQRKLTEEMKRKQEQGSMQLQGEVQELAIEEWLAAQFPLD
                     SIEEIKKGARGGDCIQVVNTRTLQNCGTIYYESKRTKDFQPSWIEKFKADIREKGANI
                     GVLVTEVMPADMSRMGLKDGIWICNYDEFKGLCSVLRESIIQISVAVSSQENKGDKMH
                     MLYDYLTGNTFRLQVEAIVEGFTQMKADLESEKRAMQSIWKKREKQIEKVTVNTIDMH
                     ASIKGIAGNAIQSVSLLELSEPEIYNDEPE"
BASE COUNT          889 a          409 c          544 g          629 t
ORIGIN      
        1 cggaggtcgg tcattaggaa aaattataac caaaacaaaa gttataacgg tggatggaga
       61 taaaccagat tttaaaacat tcctgattcg tgcgctatgc cgattcattc cgttagagtc
      121 attttctttt ttgggatcga cagactccgg atggcacgat tcaatttccc gtaccagagt
      181 ggtgagaata taatttatag cctcttgctt actaacattg gaagggaatc ttgtattata
      241 tgtatataaa tcaaacatat agtgttatat aaaagcatat aacttcaaac ctatcagatt
      301 atgtcaatct ttcgtgtaat attatgtatt gtttttccac cgctggctat tctggataaa
      361 gggtgtggct cagtgttgtt agtatttatt ctaacctgtt gtggctggat accgggcgta
      421 attgctgctt taatcataaa caataaaaaa taaaaaataa aagtaccata tgagtaaagc
      481 attgatctta attgatattc agaatgatta ttttgaaaat ggagcaaata ccctcattgg
      541 gtcagaaacg gcaagtgaga atgcccgtct gttattgaac gaattcagaa aaaagcagct
      601 accggttatt catattcaac atctgtcttt aagggcagga tctacatttt ttattcctca
      661 caccattgga gcagaaatcc atgcaaacgt agcaccgatg gataatgaga aagtttttgc
      721 aaaacattct ccaaatagct ttatagaaac cggcctacat gagtatctgt cagcactgca
      781 tgttagcgaa cttgtaatat gtggtatgat gactcacatg tgtgtagatg caaccatcag
      841 agctgccaaa gattttggat atatctgcac gttgattggc gatgcttgtg ctactaaaaa
      901 tttgcagata aatggtctac aagtagcagc gcaagatgta cagaatagtt tcctggctgc
      961 gttaaactat ttttatgcag atgtaacaac tgtgcaagat tatcttgctt aaaacagccc
     1021 ctttttaatt ctggtataag aaattaatta actctaattc ggctattcaa atcagtttgt
     1081 ctctgataaa gaaagtagac aacataaaac aacgtatatt ttgaatacaa caaatatgaa
     1141 aaacaatacc cagatcaaat gtcctaactg cggcacatct atcgacgtac aagatatact
     1201 ggcacatcag ttggaagatg agataaacct taaatatcaa agccaactag ccgaggaaag
     1261 gaagaaattc gatgctgaat ttgaaagttt gaataaggct aaggagcagt ttgagcaaaa
     1321 gaaaaaacag gaaaacgagc tttttcagga gcggttggaa aaacagttga aagaagaccg
     1381 gaaaggcatg gaggaaaagc taaaagtgaa gttacaggaa gaacaattgg agcaattcaa
     1441 cgcgctgcaa aaggaactga acgagaagtc ggaacaagta aaagagctta accgaaccaa
     1501 ggctgaaata gaaaagctaa aacgagaaaa gtctgagctg aaggaggtgg ccgaagccga
     1561 agctcaaaaa aaactgagtg aaacactaat aactgaaaaa gaaaaaatca gaaagcagga
     1621 agaggaaaaa aacgagttgc gtttcaaaga acttcaaatg caactggaag cccaacggaa
     1681 acttaccgaa gagatgaaac gcaagcagga acaaggttca atgcagttgc agggcgaagt
     1741 gcaggaactg gccattgagg aatggttggc tgcgcaattt ccattggatt ctatcgaaga
     1801 aataaagaaa ggcgcacgtg gaggtgactg tattcaggtg gtaaataccc gaacacttca
     1861 gaattgcggc accatctatt acgaaagcaa acggaccaag gattttcaac caagctggat
     1921 agaaaaattt aaagcggaca ttcgcgagaa gggtgctaat ataggcgtat tggttaccga
     1981 agtcatgccg gcagatatga gtcgcatggg attgaaagat ggtatctgga tttgcaatta
     2041 cgacgaattc aaagggcttt gttcggtgtt gcgagaatct atcattcaga taagtgtggc
     2101 tgttagttcg caggaaaaca agggcgacaa aatgcatatg ctttacgatt acctgaccgg
     2161 aaataccttc cggttgcaag tggaggctat tgtggaaggt tttacgcaaa tgaaagccga
     2221 cctggaaagc gagaaaagag ccatgcaaag catttggaag aaacgcgaaa aacaaattga
     2281 aaaagtaacg gtaaatacca ttgatatgca tgcatcgata aaaggtattg cgggtaatgc
     2341 tattcaatcg gtaagtttat tagaattatc ggagccggaa atttataatg atgaaccaga
     2401 atgaaatatc tattccggca atgattcaga ttatcactat atcaccgata taaaaagaaa
     2461 aaacgataaa t
//
LOCUS       DATDNM010000357         2110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_45340, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000357 DATDNM010000000
VERSION     DATDNM010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45340"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..924)
                     /locus_tag="VI413_05940"
     CDS             complement(<1..924)
                     /locus_tag="VI413_05940"
                     /inference="COORDINATES: protein motif:HMM:TIGR00619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HEY6914200.1"
                     /translation="MKFLHTSDWHIGRTLNGFSLLEEQKYAFEQILSLAKQNQVDGII
                     IAGDLYDRAVPSAESVITFNQMLREMNIIEKFPIYMISGNHDGAKRLSYAKDWLDYNN
                     LHLRTSLEEAFIPVETKETQIFLLPFFDPMDARIYFSNQGLDEEDTKQIKTIDDAMAL
                     VISKMKSQFNNKKNQVLVTHFAVSPHKEEIVLTSETSSKVGGLSTLNVSQFADFDYVA
                     LGHIHTRLASPSDKVQYSGSPVKFNTKEASTQKGIFVVEIKEKMLNSNFLPLQVKTDL
                     VVLEEEWEQLINRDFYERQPLNKDWFAITIKN"
     gene            complement(1076..2014)
                     /locus_tag="VI413_05945"
     CDS             complement(1076..2014)
                     /locus_tag="VI413_05945"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015081805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008677 - 2-dehydropantoate 2-reductase
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HEY6914201.1"
                     /translation="MRITIAGAGAMGSRFGLMLHKGGNEVTLIDGWPEHVKAIKEHGL
                     RANYNGEELTAHLSVELQSEISSKEKTDLIILFTKAMQLDKMLQDIKPLIDEHTKVLC
                     LLNGIGHEDTIEKYVSKNNIFIGNTMWTAGLEGPGKAKLFGDGSVELQNLISGEEETA
                     KKLAEILSESGLNAKYSNNIHYSIYRKACVNGTMNGLCTILDTNMAGLGETKPAHDMV
                     VTIVNEFAAVAKFENVNLDIAEVVQHVETCFDPSTIGLHYPSMYQDLIKNNRLTEIDY
                     INGAVSRKGKKYKVATPYCDFLTQLVHSKEELLKAK"
BASE COUNT          665 a          400 c          277 g          768 t
ORIGIN      
        1 atttttaatt gtaatcgcaa accaatcttt attaagtggt tgcctttcat aaaaatcacg
       61 gtttattagt tgctcccatt cttcttcaag aactactaaa tctgttttaa cttgtagtgg
      121 aagaaagtta gaattgagca ttttttcttt aatttcaaca acaaagattc ctttttgtgt
      181 tgacgcttct ttggtgttaa attttactgg acttcccgaa tactgtactt tatcacttgg
      241 ggaagctaac ctcgtatgaa tatgacctaa cgcaacataa tcaaaatctg caaactgtga
      301 aacatttaag gtcgataatc cacctacttt agatgaggtt tcacttgtta aaacaatttc
      361 ttctttatga ggactcaccg caaaatgagt gactaaaacc tgatttttct tattattgaa
      421 ctgacttttc atcttagaaa ttaccaacgc catcgcatca tcaattgtct taatttgctt
      481 tgtgtcctct tcatctaatc cctgattcga aaaatatatt cttgcatcca ttgggtcaaa
      541 aaagggaagt aaaaaaatct gagtttcttt tgtttccact ggaataaagg cttcctcaag
      601 ggatgttcgt agatgtaaat tattataatc caaccagtcc ttagcataac ttagtctttt
      661 ggctccatca tgattccctg aaatcatata aataggaaac ttttctataa tattcatctc
      721 tctcagcatc tgattgaatg ttatgactga ttctgcactc ggaactgctc ggtcataaag
      781 atctccagca atgataattc catcaacttg attttgtttt gccaaagata aaatttgctc
      841 aaatgcatat ttttgttctt ccaataaaga aaaaccattg agtgttcttc caatatgcca
      901 gtctgatgtg tgtaaaaatt tcatatctct atcccccaaa aataatctta atccttataa
      961 tattcacctt tcattataac attatcaaat agttttatat cattcattga tagaatatct
     1021 gataaaacaa aaatactagc attaacacta gtatttcaat aaattcaatt atttattatt
     1081 ttgcttttaa taactcttct ttgctgtgaa ctaattgtgt taaaaaatca caataaggtg
     1141 tggctacctt atatttttta cctttacgtg aaacagcccc attaatgtag tcaatctctg
     1201 tcaatcgatt atttttaatc aaatcctgat acatagaagg gtaatgtaat ccaattgtgg
     1261 atggatcaaa acaggtttca acgtgctgaa ctacttcagc aatatcaagg tttacattct
     1321 caaattttgc tactgctgca aattcattaa caatagtaac aaccatatca tgtgctggtt
     1381 ttgtttcacc caatccggcc atattagtgt ctaaaatagt acaaagtcca ttcattgttc
     1441 cattaacaca agcttttcta taaatagaat aatgaatatt gttagaatat ttagcattca
     1501 gtcccgattc tgataatatt tctgctaact ttttagctgt ttcttcctca cctgaaataa
     1561 gattttgtag ctcaaccgaa ccatcaccaa ataatttagc tttacctgga ccttctaatc
     1621 cagcagtcca catagtatta ccaataaaga tattattttt cgaaacatat ttttctatag
     1681 tatcttcgtg accaattcca tttagtaagc aaagtacctt ggtatgctcg tcaattaatg
     1741 gtttaatatc ttgtagcatc ttatctaatt gcatggcttt tgtaaacaaa ataattaaat
     1801 ctgttttttc tttagaagaa atctcagatt gtaactcaac cgatagatga gctgtgagtt
     1861 cttctccatt gtaattagct cgcaaaccat gctctttaat cgctttaacg tgttcaggcc
     1921 atccatctat aagggttact tcattgccac ctttatgaag cattaaacca aaacgactcc
     1981 ccatcgctcc tgcaccggca attgtaattc tcattttatc tctcaatcta catatttttt
     2041 ccataaaata actgaattcg ctatttttaa acgagttcag ttatagtaat ttatagataa
     2101 caaattattt
//
LOCUS       DATDNM010000358         2589 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_152718, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000358 DATDNM010000000
VERSION     DATDNM010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152718"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..1575)
                     /locus_tag="VI413_05950"
     CDS             complement(178..1575)
                     /locus_tag="VI413_05950"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEY6914202.1"
                     /translation="MRKVFLPLISIITLTFLFASTLISCKTRSENAENLMDSIDYKKT
                     TPDWAKNANIYEVNTRQYTPEGTFKAFQQQLPRLKEMGVDIIWLMPINPIGEKKRKGT
                     LGSYYSVKDYTKINPEFGTEDDFKNLVNEAHKLGMHVIIDWVANHTSWDNVWMKNHPN
                     WYTKDSLGNIIRPAGTDWDDTADLNYDNPELRRAMIDAMSYWVKNTDIDGFRCDVAGM
                     IPLNFWIHARKAIDEIKSDCFFLAEDGESQIHKAFDMSYDWPLKDIMNDIAKKKKNVT
                     DLIKHFETEAKRFKPEDIRMQFTTNHDENTWSGSEYERLGKNAVDAFTVLTYTIPGMP
                     LTYTGQEEPLLKRLHFFDKDTVGFKNYERKELISKLNQLKAQNKALWPVSYKGSFLGL
                     RNTAPNEVLSFIRFKKKTQVLCLFNFSDKEQTFKITDEITEEFNTYIGETITAKINQE
                     IKLKPWGYSVQVAKL"
     gene            complement(1735..>2589)
                     /locus_tag="VI413_05955"
     CDS             complement(1735..>2589)
                     /locus_tag="VI413_05955"
                     /inference="COORDINATES: protein motif:HMM:NF039201.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914203.1"
                     /translation="MITTPRNWVGYAESHDEERNFYKAKTWGAGTIQTDSIIRISRVP
                     LNIAFTTLLPGPKMIWEFGEMGYDYSIDSNGGRTNEKPSAWGWLDLPHRKAAYRASAK
                     IINLRKLFPTAFTQGNFSLNVSASDWTEGRRIALTHNDLDMVVLGNFDAVNTINMNAN
                     FQKTGTWYNLLSGEQLNVTNSSMTFSMQPGDLLVFTDRKINLPIELRDSTVQKDIKVF
                     PTITKGFVHITSPTAIKNVNIYTLQGLLVETITDSSEINTENFRSGVYLFEVQTLDSK
                     IVRKIIKV"
BASE COUNT          736 a          454 c          475 g          924 t
ORIGIN      
        1 tttttatcca cttttgtata aagacgatgc tactgtaaaa cgtgcactgg aacaattgaa
       61 aaagaaatag tttcggcatt gaattttgct tgacaaaaat ggtttcactg aaaagtgaaa
      121 ccattttttg tttttattca ttggttaaat gaaaatgact tagattagtt ttatatttta
      181 aagttttgct acctgcacag aatatcccca tggcttaagc ttaatttcct gattgatttt
      241 agcagtaata gtttcaccaa tataagtatt aaactcttct gttatttcat cggtgatttt
      301 gaatgtttgt tctttatctg aaaagttgaa taaacataaa acctgtgttt tctttttgaa
      361 acggatgaaa cttaaaactt cattaggtgc tgtatttcta agtcctaaga aactaccttt
      421 gtaactaacc ggccaaagtg ctttattctg tgctttaagt tggtttaatt ttgaaataag
      481 ttcctttcgc tcataatttt tgaagccaac ggtatctttg tcgaaaaagt gaagtcgttt
      541 taggagcggt tcttcctggc cggtgtaagt gagcggcatt cccggaatag tgtatgtaag
      601 aacagtaaat gcatctacag catttttccc aagtcgttca tattcgcttc cactccaggt
      661 gttttcatca tggttggttg taaattgcat tctgatatct tcaggtttaa accgttttgc
      721 ctctgtttca aaatgtttaa tcagatctgt tacgtttttc tttttcttgg ctatgtcatt
      781 cataatgtct ttcaaaggcc agtcgtaaga catgtcgaac gctttgtgaa tttgcgattc
      841 tccatcttcg gctaaaaaga aacaatctga tttaatttca tcaatggctt tgcgggcatg
      901 aatccaaaaa tttaaaggaa tcatacctgc tacatcgcac cggaaaccat caatgtcagt
      961 atttttaacc cagtaggaca tggcatctat catggcgcga cgtaattccg gattatcata
     1021 atttaaatcg gcggtatcat cccaatcggt cccagccgga cggatgatat tgccaagact
     1081 gtcttttgta taccagttag gatgattttt catccaaaca ttatcccacg aagtatgatt
     1141 tgcaacccaa tcgataataa catgcattcc cagtttgtgt gcttcgttca ccagattctt
     1201 gaaatcatct tccgttccaa attcaggatt gattttggtg taatctttta ccgaataata
     1261 acttccgagt gttcctttac gtttcttttc tccaatagga ttgattggca ttagccagat
     1321 aatatcaacg cccatttctt tcaatcgtgg caattgttgc tgaaaagctt tgaatgttcc
     1381 ttcgggagtg tattggcgcg tgtttacttc gtagatattt gcatttttgg cccaatcagg
     1441 agttgttttc ttgtaatcaa tggagtccat taaattctct gcattttccg accgggtttt
     1501 gcacgagatt agagttgaag cgaataaaaa ggttagagta ataattgaaa taagaggaag
     1561 aaatactttt ctcattttga tcatttttga attaggaatt tattagaatt gtaatttgga
     1621 tttggcgtaa gaatagtttc tatttgaaca aaaaattatt tagaaagttt atattattta
     1681 attaatgaag atcgataatc tgagaaaaat gaggttttat tcatgtttgc aaaattatac
     1741 tttaatgatt ttgcgaacga ttttactatc aagtgtttgt acctcaaata agtaaactcc
     1801 acttctgaag ttctctgtat ttatttcaga actgtctgtt atcgtttcga ccaataggcc
     1861 ttgcagagta tatatgttta cattttttat agctgttggc gatgtaatat gcacaaaacc
     1921 cttcgttatt gttggaaaaa cttttatgtc tttttgaact gtcgaatccc gcaattcaat
     1981 tggtaggttt atttttcgat ctgtgaagac taaaagatca ccgggttgca tactgaaagt
     2041 cattgacgaa tttgttacat tcaactgctc tccggaaagt aaattatacc aggttcctgt
     2101 tttctgaaaa tttgcattca tattaatggt atttacagcg tcaaaattac ctaaaacaac
     2161 catgtctaaa tcgttgtggg ttagtgcaat tcttcttcct tctgtccagt cggatgcact
     2221 gacattaaga gaaaaattgc cttgtgtaaa ggctgttgga aaaagcttgc gaagattgat
     2281 gattttagca gaagctctgt aagctgcttt gcgatgtggt aaatcgagcc agccccatgc
     2341 agatggcttc tcattggtac gccctccatt tgaatcaatc gagtaatcgt atcccatttc
     2401 accaaattcc caaatcattt taggacctgg caagagtgtt gtaaaggcaa tattcaatgg
     2461 aacacggcta atacggataa tcgaatcggt ttgaatagtt cctgctcccc aggtttttgc
     2521 tttatagaaa ttacgttctt catcatgact ttcggcatat ccgacccaat ttctgggggt
     2581 ggtaatcat
//
LOCUS       DATDNM010000359         2240 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2075238, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000359 DATDNM010000000
VERSION     DATDNM010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2075238"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..390
                     /locus_tag="VI413_05960"
     CDS             <1..390
                     /locus_tag="VI413_05960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914204.1"
                     /translation="GKEIQAEYKTGSGCKTNAFLQIHVTPGHKKSLPAGRLNYCKGYH
                     TIKTVDYIFFYSPLGVGGRFLPFISLFNTSETLKLTTAPTTARITVLTRSSTNTLLKM
                     ERNMPPHVPAYTCPSWFVSGSSITDRL"
     gene            complement(374..637)
                     /locus_tag="VI413_05965"
     CDS             complement(374..637)
                     /locus_tag="VI413_05965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914205.1"
                     /translation="MNTDKNATATDPNNMSVVERVKAPTPKFFKTLRTIGLALAAVGG
                     AILAAPVAVPAALVSIAGYVALAGGVMTAVSQTAVDTNTKDGQ"
     gene            complement(655..1404)
                     /locus_tag="VI413_05970"
     CDS             complement(655..1404)
                     /locus_tag="VI413_05970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914206.1"
                     /translation="MAQQKSILKLKGTIGGITFYKSKDGYLAREKGGVDASRIANDPG
                     FARTRENGAEFANAASAGKLLRNAIRVLGKDASDGRVTARLTQIMAQIKNMDEANARG
                     ERSAAEGMAKDEAKALLNGFNFNENAVLGAVLYTPFSVDAATGEIKIDALNPQNDISI
                     PSGASHVVLKSGFASINFLTGESEMTVSAPLRIATDAAAQAVSLKPAAAPAVEGTHIY
                     LLSIDFVQSVNNADYSLNNNSYNVLAIVGIE"
     gene            1561..1758
                     /locus_tag="VI413_05975"
     CDS             1561..1758
                     /locus_tag="VI413_05975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914207.1"
                     /translation="MEAKRICIYPKDVQRITGKSERYGRTLLMQIKQHFQKEDHQLVS
                     IDEFCQYTGLKAEQVYPLIIG"
BASE COUNT          698 a          497 c          416 g          629 t
ORIGIN      
        1 ggaaaagaaa ttcaggcaga atataaaact ggttcaggat gcaaaacgaa tgcttttcta
       61 caaatacatg taacacctgg gcataaaaaa agcctccccg ccgggaggct aaactactgc
      121 aaaggttacc acaccataaa aacagtagat tatattttct tttactcccc tttaggggtc
      181 gggggtcgtt ttctcccttt tataagcctt ttcaatacca gcgaaacact aaagcttaca
      241 acagcaccaa cgacggccag aatcaccgtt cttaccagat cttcaacaaa tacattgctg
      301 aagatggaaa gaaacatgcc tccacatgtt ccggcatata cctgcccgtc gtggtttgtt
      361 tctggaagtt ccattactga ccgtctttag tgtttgtatc aactgcagtt tgactaactg
      421 ccgtcattac tccaccagcc agagcaacat agccggcaat acttaccagg gcagcgggta
      481 ccgcaacggg agctgctaaa attgcacctc cgacagccgc caaagccaac ccgatggtcc
      541 gaagcgtttt aaaaaacttc ggagtcggtg ctttgacacg ttccacaaca ctcatgttgt
      601 tcggatcggt tgcggttgca ttcttatctg tattcatata caatggtttt atgattattc
      661 aataccaaca atagccaaca cattgtacga gttgttattc aaagaataat ctgcattgtt
      721 taccgattga acaaagtcaa tcgacaacag ataaatgtga gtcccttcaa ctgccggagc
      781 agctgccggt ttcagcgaaa ctgcttgcgc ggctgcatcc gttgcaatac gcaaaggagc
      841 ggaaactgtc atttccgact caccagtcag aaagttgata cttgcaaacc cgcttttcaa
      901 aacaacatga gaagcaccgc ttgggatgct aatgtcattt tgtggattca aagcatcaat
      961 cttgatttcg cctgttgctg catccaccga aaatggtgta tacaacacag ctcccagaac
     1021 tgcattttca ttgaagttaa aaccattcaa aagcgctttg gcttcgtctt tggccatacc
     1081 ttcggctgca cttcgttcac ctctggcatt ggcttcatcc atgttcttga tttgtgccat
     1141 gatttgagtt aaacgggctg ttacacgtcc atcagatgca tccttaccca acacacgaat
     1201 agcattacgc aaaagtttac ctgcagaagc tgcattggca aactcagcac cattttcacg
     1261 tgtacgggca aatcccggat cgttggcaat tcgggaagca tccactccgc ctttttcccg
     1321 ggcaaggtaa ccatctttcg atttgtagaa ggtaattcca ccaatggttc cctttagttt
     1381 caaaatactt ttttgttgtg ccataattca aaaatttaaa attatcgcaa caaatgtata
     1441 gcacaagaca acttcccgga atctgtacac ttccgttaat gtttattcca gccgtttttt
     1501 ccgcaaatga ctaaaatatc aaagaaataa ttgtaaattt gccttaataa aagccgtcta
     1561 atggaagcaa aacgcatttg catatacccg aaggatgtac aacgaataac cggcaagagc
     1621 gaacgttatg gaaggactct gctaatgcag attaaacagc actttcaaaa ggaagatcac
     1681 cagctcgtca gcattgacga gttctgccaa tacactggac taaaagccga acaagtatat
     1741 cctcttatta tcggataact aataaatcaa gcataccaaa ggttagttat ctcgctggat
     1801 aatatatttg aaccacacta aaaaatagtc ttcattcctt tgcaatctcg tcaaaattag
     1861 gtatttttgt atacacgatt tttcaattaa aagactgctt ttattagtga atttttttcg
     1921 ggagaaaatt cgggtaccca atgatttgac gagcataaca aactgttatt caatatagta
     1981 tttggagaat acaagtccct ctctctccgc aaaaagaatt tcaataacaa tcaaaagccc
     2041 gtaaaatcaa tgatttacgg gctttttcat tcttggatat atccaaaata ttcagaaaat
     2101 atgggatcaa tcggaaaagt tgtgtgcatt agattaaaaa taataatttt gtctcatgga
     2161 aaaagagaca ggattgaaat cagccgaaca tcagttgttg gaattaatat tgccagaagg
     2221 gattttggaa tactttgaga
//
LOCUS       DATDNM010000360         3878 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_793110, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000360 DATDNM010000000
VERSION     DATDNM010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3878
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_793110"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..1241
                     /locus_tag="VI413_05980"
     CDS             3..1241
                     /locus_tag="VI413_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010799990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 domain-containing protein"
                     /protein_id="HEY6914208.1"
                     /translation="MKPFKGIRPPQNLVEKVASRPYDVLNSEEARTEAEGNAMSLYHI
                     IKPEIDFEPGTDEHEEKVYNKAAENFVKFRQEGWLKQDEVEKYYVYAQTMNGKTQYGL
                     VVCANVDDYLNENIKKHELTRRDKEEDRMKHVRVNNANIEPVFFAYPHQDELDAIVAE
                     TIKGTPVYDFVAPGDGFGHHFWVIDDAKTIARITELFAGIPSLYIADGHHRSAAAALV
                     GDEKRKANPNHTGDEEYNYFMAVCFPDNQLNIIDYNRVVKDLNNLTDEEFLAKLAVNF
                     DVELKGSEIYKPNKLHNFALYLSGKWYSLTAKAGTYNDNDPIGVLDVTISSNLILDEV
                     LGIKDLRSDKRIDFVGGIRGLGELSSRVDSGEMRVALALYPVSMKQLIDIADSGNIMP
                     PKTTWFEPKLRSGLVIHELV"
     gene            1370..3358
                     /locus_tag="VI413_05985"
     CDS             1370..3358
                     /locus_tag="VI413_05985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005640145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEY6914209.1"
                     /translation="MRLKISYFIFILLAATFLQGCSLKARIKKADKTYAQGEYYAAGE
                     LYKRVYGQIPSTEKTLKGRIAFQQAECYRYINNSRAEQAYINAIRYKYPDSIVFLRYA
                     QVLQRIGKYGDAAANYNIYLKKDSASLLAKNGVAACKNVADWKKTPTRYTVRKADLFN
                     VRMTDNFSPAFLGKDADVLIFTSSRQFNKKTMLKNNTITGLPSNNMFMTRKDAGGKWE
                     KPNILGEEVNTIENDEGACSFSFDGKVMYFTKARQVVDSEVGTEIFSSNRAGGTWSAP
                     KKIKIFADTTVSVAHPAIAPDGQTLYFVSDAKNGQGGKDIWKATVDNGECKFIENLGP
                     EINTPGDEMFPTMRADGTLYFSLNGIPGYGGLDVFKATPQKEGGWIVENIGEPINSSA
                     DDFGMTFAGSSEKGFFSSNRGDAKGYDAIWSFELPELAYVVEGKVTDEKGTPIPEATI
                     RLVSTSGLNSRAQSKKDGTYRIKLDKDMDCVMMASSRGYLNQQNNLTTQGLTSSKTFT
                     VNFKLSSITKPIEIENIFYEFGKWDLTPASTTGLQVLVKLLKDNPNITIELSANTDFV
                     GNNEANKILSQKRAKSVVDYLIAAGIAADRLTAVGNGEEKPVVVDANMAKKYPFLKEN
                     DLLDEATILKLTPEQQETANQINRRTEFRVLKTTYKLY"
     gene            3410..>3878
                     /locus_tag="VI413_05990"
     CDS             3410..>3878
                     /locus_tag="VI413_05990"
                     /inference="COORDINATES: protein motif:HMM:NF012524.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEY6914210.1"
                     /translation="MIKADKFFIENINEILQNGYWDENSRPKYADGVEAKSKFITQVF
                     EKYDISKNEFPVTTLRNTAIKTGIKEILWIYQKQTNSLDIAHELGINWWDEWNIGDST
                     IGNRYGYTVSKYNLMNNLLKGLAENPFGRRHILNLYQYSDLNETKGLYPCAYET"
BASE COUNT         1217 a          744 c          876 g         1041 t
ORIGIN      
        1 ttattaaacc atttaagggc attcgtcctc ctcaaaacct ggtagaaaaa gtggcatcgc
       61 gcccttacga tgtgttgaat tccgaagaag cccgcacaga ggccgaagga aatgcaatgt
      121 cgttgtatca tattatcaaa cccgaaattg atttcgaacc gggaaccgac gaacacgaag
      181 aaaaggtgta taataaagct gccgaaaatt ttgtaaagtt ccgtcaggaa ggttggttga
      241 agcaggatga agtggagaaa tactacgtgt atgcccagac gatgaatggt aaaacccagt
      301 acggattggt agtttgtgcc aatgtggacg actacctgaa cgaaaatatc aaaaaacatg
      361 agttgacccg tcgcgataag gaagaagacc gcatgaaaca cgtgcgtgta aacaatgcta
      421 atatcgaacc ggtattcttt gcctatccgc atcaggacga gttggatgct atcgtagccg
      481 aaactattaa aggtactccg gtgtatgatt tcgtggctcc gggcgacggc ttcggacacc
      541 atttctgggt aattgacgat gctaaaacca ttgcccgcat taccgaactg tttgcaggca
      601 ttccttcact gtatattgcc gatggtcatc accgtagtgc tgctgcggct ttggttggcg
      661 acgaaaaacg caaagcaaat ccgaaccaca ccggcgacga agaatataat tactttatgg
      721 ccgtgtgttt ccctgataat cagttgaaca ttatcgacta caaccgcgtg gtgaaagacc
      781 tgaataacct caccgacgag gaattcctgg ctaagctggc tgtgaatttt gatgtggaat
      841 taaaaggttc tgaaatctac aaaccaaata aattgcacaa ttttgcgttg tatttgtcgg
      901 gcaaatggta ttcgcttacc gccaaagccg gaacttacaa cgacaatgac ccaatcggcg
      961 tgttggacgt aaccatttct tcaaatctta ttctggacga agtgcttggc attaaagacc
     1021 ttcgcagcga taaaagaatt gatttcgtgg gtggtatccg tggcttgggc gaattgagca
     1081 gccgtgttga cagtggcgaa atgcgtgtgg cattggcact ttatccggta tcaatgaaac
     1141 aactgattga cattgccgat tcaggaaaca ttatgcctcc aaaaactacc tggttcgaac
     1201 ctaaactgcg ttcgggactg gtaatacatg aactggtata gagttttgag ttctgagttt
     1261 tgagtaaaat gttcgttttg actcttgggt tctgaattga gaaataaatc tccaaattca
     1321 gaactcaaaa ctcccaactt ttctttctaa catcttattc tggaaatata tgcgtttaaa
     1381 aatatcgtat ttcattttta tacttctggc tgcaactttt ttacagggtt gctccctgaa
     1441 ggcgcgtata aaaaaggctg ataaaaccta tgcgcagggc gaatattatg ctgcaggtga
     1501 attgtacaag agagtatatg gccagatacc ttccaccgaa aaaacgctta aaggacgcat
     1561 tgcctttcag caggccgaat gttaccggta tataaataat agtcgtgctg agcaggcata
     1621 tatcaatgcc atacgttaca aataccccga ttctattgtg ttcctgcgat atgcccaggt
     1681 tttacagcgc attggcaaat atggtgatgc ggctgcgaat tataacattt acctgaaaaa
     1741 agacagcgcc agcttattgg ctaaaaatgg tgtggccgca tgcaaaaatg tggccgattg
     1801 gaaaaagact ccgactcgct acaccgtgcg taaggccgat ttgttcaacg taagaatgac
     1861 tgataacttt agtcctgctt ttttgggcaa ggatgccgat gtgcttattt ttacttcttc
     1921 ccggcagttt aataaaaaaa caatgttgaa aaacaatact attaccggat taccaagtaa
     1981 taatatgttt atgacgcgca aagatgccgg tggaaaatgg gaaaaaccaa acatactggg
     2041 cgaagaggta aacaccattg aaaacgatga aggcgcttgc tctttcagct tcgacggtaa
     2101 agtgatgtat ttcacaaaag cacgacaagt ggttgactcc gaagttggaa ctgaaatttt
     2161 ctcttcaaac agggccggag gaacctggag tgctccaaag aaaattaaaa tttttgccga
     2221 taccaccgtt tccgtggctc atccagctat tgcccccgat gggcagacac tttactttgt
     2281 ttcggatgct aaaaacggac aaggtggaaa agatatctgg aaagcaacag tggataatgg
     2341 agaatgtaaa ttcatcgaaa atcttggtcc cgaaataaat acacccggcg acgaaatgtt
     2401 cccaaccatg cgggctgacg ggacgttgta tttttcgtta aacggaattc caggctatgg
     2461 cgggttggat gtgtttaagg caacccctca aaaagagggt ggctggattg tcgaaaatat
     2521 aggtgaacct ataaattcga gtgcagacga ctttgggatg acttttgccg gaagttccga
     2581 aaagggattt ttctcttcca accggggtga tgcaaaaggc tatgatgcta tctggagttt
     2641 tgaattaccg gaacttgctt atgttgtaga aggaaaagtc actgacgaaa aaggtactcc
     2701 aattccagag gctaccattc gtctggtaag tacttcggga ttgaattccc gtgctcaatc
     2761 caaaaaagat ggaacctatc gcatcaaact tgataaagat atggattgtg tgatgatggc
     2821 ttcttcgcgc ggttatctga atcaacagaa taatcttaca acgcagggtc tgacttccag
     2881 caaaacattt acagtgaatt tcaaactttc atctattact aaaccaattg agattgagaa
     2941 tattttctat gaattcggta aatgggatct tactccggct tctacaaccg gtttgcaggt
     3001 gttggtgaaa ctgttgaagg acaatccgaa tataaccata gaactaagcg caaacactga
     3061 ctttgtgggt aacaatgagg caaataagat tctgtcgcaa aaacgtgcta aatcagttgt
     3121 cgattatctg attgctgccg gaattgctgc cgacaggctt actgctgttg gtaacggcga
     3181 agaaaaaccg gttgtggtag atgctaacat ggctaagaaa tatccgttcc taaaagagaa
     3241 cgacctgttg gatgaagcaa ctattttaaa actcactccc gaacaacagg aaacagccaa
     3301 ccaaatcaat cgtcgtaccg agttccgggt gttgaaaacg acgtataagc tgtattaggt
     3361 atgcagagga tgtgcctgag ggtgcaatta atagtataaa atttgaaata tgataaaagc
     3421 agataagttt tttatagaaa atataaacga aattcttcaa aatggttatt gggacgaaaa
     3481 ttcacgaccc aaatacgccg atggggttga agctaaatcg aaatttatta cacaggtttt
     3541 tgaaaaatac gatatctcaa aaaatgagtt tccggtaaca acactgagaa atacggcaat
     3601 aaaaacagga atcaaagaaa tcctgtggat ctatcaaaaa caaaccaact cattggatat
     3661 tgcacatgaa ttaggcataa actggtggga cgaatggaat attggtgatt ctactattgg
     3721 taacaggtat ggatatactg ttagtaagta taatttgatg aataacctgt tgaaaggcct
     3781 ggctgaaaat ccttttggta gacggcatat tttaaattta tatcaatatt ctgatttaaa
     3841 tgaaaccaag ggtttgtacc cttgtgctta tgaaaccc
//
LOCUS       DATDNM010000361         5120 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1327507, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000361 DATDNM010000000
VERSION     DATDNM010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5120
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1327507"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VI413_05995"
     CDS             <1..421
                     /locus_tag="VI413_05995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEY6914211.1"
                     /translation="RDVRVIVYDGKMHPVDSNEISFRLAGRHAFSQAFKEAGPKLLEP
                     VYDVVVQAPSDRLGDVMSDLQGRRAVIMGMESEKGYEKLSAKIPLKELSSYSTTLSSL
                     TGGRASFSMKFASYELVPMEIQDKLLKEYEATKKEEE"
     gene            complement(504..1235)
                     /locus_tag="VI413_06000"
     CDS             complement(504..1235)
                     /locus_tag="VI413_06000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914212.1"
                     /translation="MDRIFSKKLLAFLLVVMTFMGCDLLGELDKNVDVSKLKGTWIDK
                     ESYAMSFIDFYADNQASFCLYNKTFERRDTFNYRLFNDSIAIDFIGDNDSTETLHKLV
                     YKDNNTIAISNLTSIPEHPDKVYYRKNIVTKRDSNIIDIGMNELYYDRNYDFRLQIDS
                     VLNDSRCPVGVVCVWAGNAQVRLDLIVEGNYHYQFSLNTNSSFQQDTLIRGIKYKLLN
                     VLPYPDINKELNYQKYRVRVSATKQ"
     gene            complement(1300..2259)
                     /locus_tag="VI413_06005"
     CDS             complement(1300..2259)
                     /locus_tag="VI413_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914213.1"
                     /translation="MKKFIINILLFPIAIFSIFSLLSFLVDRGLRNSEYGNLKEWNDI
                     FDKKISSDILIQGSSRAWVQFNTFILDSILNGNSYNMGMDGSPFDVQYLRYKACVNNN
                     IQPKLILQNVDWDTMSKNATVYQKYQFLPYINDPDFEEQVLKEGLLSKSDIYIPFLKY
                     SGQTKAIQIGLSEFFGIKHFVSTKHKGYAGADVSWDGSNFEKRKKQGKIRWSINPQVE
                     QLFIEFLSDCKKRNIKVVLVFSPAYHELSEMIVGRTDLLSYYETMARDYNAGFVDFST
                     DSLSLDKNNFYNATHLNKRGSELFTLKLANQLKTMNLLTTFNK"
     gene            complement(2263..3531)
                     /locus_tag="VI413_06010"
     CDS             complement(2263..3531)
                     /locus_tag="VI413_06010"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005856000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HEY6914214.1"
                     /translation="MHEATDQRRKRFWFWLSVFINLGFLSIFKYYNFFVSSFADGLSH
                     VGINYSFYTLQIILPVGISFYTFHGLSYVMDIYKGRIKPERNIIDYSVFVCFFPLLVA
                     GPIERATHLLPQLIKKREFDYSKAVDGMQQILWGIFKKIVVADNCATIVNSIFDSYQT
                     QSGSVLLLGGVFFAFQIYGDFSGYSDIAIGVSRLFGISLIRNFNFPYFSRDIAEFWRR
                     WHISLTTWFRDYLYIPLGGSRGPKWQVVRNTFIIFLVSGFWHGANWTFIAWGAFHAIL
                     FLPLILSGNNRKNTNTVAEGRHLPGLKEVVQMGVTFLLVVIGWILFRSDSIGQSMDYF
                     TRLFSFNRNYFDISFLTSAGAIFSGYNILISVLSVIMMLLIEWSQRGKQHGLELGNLP
                     KSLKWIANGSICLLIYLCHADPAAFIYFQF"
     gene            complement(3830..>5120)
                     /locus_tag="VI413_06015"
     CDS             complement(3830..>5120)
                     /locus_tag="VI413_06015"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008156031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HEY6914215.1"
                     /translation="NDPLIDNKDSKKRYRADVLIEDLLAKYDDKMNKEVEKAAKRFGE
                     SFDEAVFRSTNERVLENQAKRNEIHARFVAALNDGNLAELKAIIEDYEVVCPISGTRN
                     WTDVRQFNLMFSTEMGSTADGAMKIYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIG
                     KAFRNEIVARQFIFRMREFEQMEMQFFVRPGEEMKWFEHWKEFRLKWHKALGLGDQKY
                     RFHDHDKLAHYANAATDIEFEMPFGFKEVEGIHSRTDFDLSSHEKFSGKNIKYFDPEI
                     NQSYTPYVIETSIGVDRTFLSIMAASYNEETLEGGDTRVVLNIPPVLAPVKACIMPLV
                     KKDGLPEKAREIMNDLKFDFKCGYDEKDSIGKRYRRQDAIGTPFCITVDHQTPVDNTV
                     TIRYRDTMLQERVAIADLHKIIGDLVNMKNLFKKIVG"
BASE COUNT         1662 a         1049 c          909 g         1500 t
ORIGIN      
        1 ccgcgatgta cgcgtaattg tgtacgacgg caaaatgcat ccggttgact caaatgaaat
       61 ttcgttccgt ttggctggtc gccatgcatt ctcgcaagcg tttaaagaag ctggtccgaa
      121 actgctagag ccggtgtacg atgtggtagt ccaggctcca tccgaccgct tgggcgacgt
      181 aatgagtgac ttacaaggtc gcagggcagt gattatgggc atggaaagtg aaaaaggcta
      241 cgaaaaactg tcagcaaaaa ttccattgaa agaattgagc agctattcaa ccacgttgag
      301 ttcccttacc ggtggtcgcg cttcgttcag tatgaaattt gccagctacg agttggttcc
      361 aatggaaatt caggacaaat tacttaaaga atacgaagca actaaaaaag aagaggaata
      421 aaaaacacac gatttttgct cttcaaaacc aaagcagtta tccgaaaacg ggtaactgct
      481 tttttcgttg aattttctta taattattgt tttgtagctg aaactctgac tctgtatttt
      541 tgatagttta gctccttatt aatatcggga tatggcaaaa cattcagcaa cttatactta
      601 atgccccgga ttaaggtatc ttgttggaac gatgaatttg tattcagact gaattggtag
      661 tgataatttc cttcaactat caaatcgagc cttacctgcg catttccggc ccaaacgcaa
      721 actactccaa ccggacatct tgaatcattt aaaactgagt caatctggag tctaaagtca
      781 taattccgat cgtaataaag ttcattcatg ccaatatcaa taatgttact atccctcttt
      841 gtaacgatat ttttacgata atacacttta tctggatgtt cgggaattga agtaaggttg
      901 cttatcgcaa ttgtattatt atccttataa acaagcttgt gcaatgtctc cgtactgtca
      961 ttatccccaa taaaatcaat ggcaattgaa tcattaaaaa gacggtaatt aaatgtatct
     1021 cttctttcga atgttttatt atacaaacaa aaacttgcct gattatcggc atagaaatca
     1081 ataaaactca ttgcataact ctctttatca atccaggtgc ctttgagctt acttacgtct
     1141 acatttttat ccaattcacc taacaaatca cagcccataa aagtcattac gactaataga
     1201 aaagccaata gcttctttga aaatatccgg tccatagtgc gtttttattt tatagatgaa
     1261 attttcagat gattcgttgc ttatattcaa tagaaacgct tatttattga acgttgtcaa
     1321 cagattcatt gtttttagct gattggcaag tttgagagta aaaagttcag atcctctttt
     1381 atttaaatgc gttgcattgt aaaaattatt tttatctaat gacagtgaat cggtcgaaaa
     1441 atcaacaaaa cctgcattat aatccctggc catagtttca taatacgaca ataaatcagt
     1501 tctgcctacg atcatttcag aaagctcatg ataggcaggc gaaaaaacta aaacaacttt
     1561 aatatttctc ttcttacaat ctgacaaaaa ctctataaaa agttgttcaa cctgtggatt
     1621 aatggaccat cttatttttc cctgtttttt ccttttctca aaattacttc catcccatga
     1681 gacgtctgct ccggcatatc ccttatgttt tgtggataca aaatgtttta tcccaaaaaa
     1741 ctcagagaga ccaatctgaa tagctttcgt ttgccctgag tattttagaa aagggatata
     1801 aatgtctgat tttgacaaaa gtccttcttt cagaacctgc tcctcaaaat ccgggtcatt
     1861 gatatatgga agaaattgat acttctgata aaccgttgca ttcttgctca ttgtatccca
     1921 atctacattc tgaagaatta atttcggttg tatattgttg ttgacacaag ctttgtaacg
     1981 aagatactgg acatcaaacg gagagccatc catccccata ttgtatgaat tcccattaag
     2041 aatgctgtcc aggataaatg tattaaactg tacccacgcc ctcgaactcc cctgaataag
     2101 aatgtctgat gatatttttt tatcaaaaat atcattccat tctttgagat tgccgtattc
     2161 cgagtttctt aatccacgat caaccagaaa agagagaaga gaaaagattg aaaatatagc
     2221 tatcggaaaa agcaggatat ttattatgaa ttttttcata gattaaaatt gaaaataaat
     2281 aaatgctgca ggatcagcgt gacacaaata aataagcaaa caaatactcc cgttggcaat
     2341 ccatttaagg ctcttcggaa ggtttccgag ctccaatcca tgttgcttac cacgctggct
     2401 ccattcaatc aacaacatca ttatcaccga aagtacagaa ataaggatat tataacctga
     2461 aaaaatagca ccagcacttg tcaggaaaga aatatcgaaa tagtttcggt taaaactaaa
     2521 cagccgcgta aaataatcca ttgactgccc tatcgaatct gaccggaaca gtatccaacc
     2581 tattactact aatagaaatg taacacccat ttgaacaact tctttcaacc cgggcaagtg
     2641 tctgccttca gccaccgtat tggtattttt acgattatta ccagacaaaa taagcggaag
     2701 aaaaagtatg gcatgaaaag ccccccaggc aataaatgtc cagttggctc catgccagaa
     2761 accactgact aagaaaataa tgaatgtatt tcttacaact tgccatttgg ggccacggct
     2821 acctccaagc ggaatatata aataatcgcg aaaccaagta gttaatgaga tatgccaccg
     2881 tctccaaaat tcggcaatat ccctggaaaa atatgggaaa ttaaaatttc gtatcaggct
     2941 aattccgaac aaacggctga caccaatagc aatatcagaa taacctgaaa aatcgccgta
     3001 tatctgaaaa gcaaaaaaca ctccacccaa cagaagcacg cttccacttt gagtttgata
     3061 agaatcaaaa atactattta ctatggttgc gcaattatct gccacaacaa ttttcttaaa
     3121 tataccccac agaatttgtt gcattccatc tactgctttc gaataatcaa actctctttt
     3181 tttaattaat tgcggcaata aatgtgttgc cctctcaatc gggccagcta caagaagtgg
     3241 aaaaaaacat acaaaaacag agtagtcaat gatatttcgt tcaggcttta tcctgccttt
     3301 gtaaatatcc ataacgtacg acaatccatg aaatgtgtaa aaggatattc caaccggaag
     3361 aattatctgt aaggtataaa aactatagtt aatgcctaca tgtgatagcc catcagcaaa
     3421 agaagaaacg aagaaattgt agtatttgaa aatcgaaaga aaacccagat taatgaatac
     3481 actaagccaa aaccagaacc ttttcctacg ttggtctgtt gcttcgtgca tctttatgcc
     3541 ggtaaaaaaa tctaatgaag tagaaaaaac aagaaggaat aagaaccggt agtcccaaca
     3601 gccatagaag aagtagctcg aaaaaagtaa aattatattc tgaagtttat aatttccttt
     3661 tgtcgcaaac caatataata taaagacgat tggtaaaaaa atagcaaatt caatagagtt
     3721 aaacagcatg ccggttcaag gttaagaaag acaatggata taatacaaaa acggacaaaa
     3781 atataaaaat attttgtccg ttttttacgc aaattgtttt tatagagact tatcctacaa
     3841 ttttcttaaa caagtttttc atgttcacca ggtcaccgat aattttgtgc aaatcggcaa
     3901 tagcaacacg ttcctgcaac atcgtatcgc ggtagcgaat agttactgta ttatcaaccg
     3961 gagtctggtg atccacagta atacagaacg gcgttccgat tgcatcctga cggcggtaac
     4021 gttttccgat tgagtccttt tcgtcgtaac cgcatttgaa atcgaacttc agatcgttca
     4081 taatttcgcg ggctttttca ggaaggccat ctttctttac caacggcatg atacaagctt
     4141 ttacaggagc caacaccgga gggatattca ataccacacg ggtatcgccg ccttcgagcg
     4201 tttcttcgtt gtatgaagcc gccatgatag aaaggaaagt acggtccaca ccaatcgaag
     4261 tctcgattac gtacggagta tatgattgat tgatttcagg atcgaaatat ttgatatttt
     4321 taccggagaa tttctcgtgg ctgctcaaat cgaaatcggt acgtgaatga attccttcca
     4381 cctccttgaa accgaaaggc atttcgaatt cgatatcggt agcggcattg gcatagtgag
     4441 ccaatttgtc gtggtcgtga aaacgatatt tctggtcacc aagtccaagt gctttgtgcc
     4501 atttcagacg gaattctttc cagtgctcga accacttcat ttcttcaccc gggcgaacga
     4561 agaactgcat ttccatttgt tcgaactcgc gcatacggaa gataaactga cgtgccacga
     4621 tttcgttacg gaacgcctta ccaatttggg caataccgaa aggaatcttc atacggccgg
     4681 ttttctgaac gttcaggaag ttcacgaaaa taccctgtgc cgtttcagga cgaaggtaaa
     4741 ttttcatagc gccatcggca gttgaaccca tttcggtaga gaacatcagg ttgaactggc
     4801 gaacatcagt ccagttgcgt gtgccactaa tcgggcaaac cacttcataa tcttcgataa
     4861 tagctttcaa ctcggctaaa ttgccatcat taagggccgc aacaaaacgg gcgtgaattt
     4921 cattgcgttt agcctgattt tccaacacac gttcgttagt agagcggaat acagcttcgt
     4981 caaagctttc gccaaaacgt ttagcagctt tttccacttc cttattcatt ttatcatcgt
     5041 actttgccaa taaatcttca atcagaacat cagcacggta acgttttttg ctgtctttat
     5101 tgtcgatcaa cggatcgttg
//
LOCUS       DATDNM010000362         2010 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_45773, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000362 DATDNM010000000
VERSION     DATDNM010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45773"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            301..>2010
                     /locus_tag="VI413_06020"
     CDS             301..>2010
                     /locus_tag="VI413_06020"
                     /inference="COORDINATES: protein motif:HMM:NF013779.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C10 family peptidase"
                     /protein_id="HEY6914216.1"
                     /translation="MKKNYLISPRIFNSRLLIPTHLFRYIITCLLLLQITICFGKQIT
                     SEQSLVIAQKFYQKHKSASPAAKIKSTVSPVFKLDYIARDKSNMSKVKAQTADTTGYF
                     YVYNIGSNQGFIIVSGDDTTKPILAYSDDSTFPTTNIPSNLQYWLDFYKTEIKYAQQT
                     ALSTTSVENSTLSTAGTVLVQPLLSNIKWDQTTPYNLYCPFSTTDNERALTGCVATAM
                     AQIMKYNQWPVKGTGTYSYTDGTNGTLSADFGNTTYNWSNMPDGYGSVSTTSTQDSAV
                     AQLMYQCGVSVSMNYSPSGSSALVSDAAIALKNYFGYDTDLNIYTREFYSSTEWKNMI
                     KTELNASRLVMYGGTTGTFGHAFVCDGYDSNDLFHINWGWSGYYNGFFELSVLNPPPT
                     ESISSTGGFSQGQQIITGIQRPDAIANPSYLINMYSLGLTSTKSTITNIASQSFNVNF
                     GFLNYGANDFNGKFAIGLYKDGVFQKTLSTYPSNVSLLANYGTPNFTLSGLSLSGLAS
                     GTYKIYCIYKPSTASSWTIMKGSTLLNNYLNVVVSGTAATITKPSLAPALTLSQKITL
                     SGKA"
BASE COUNT          646 a          424 c          354 g          586 t
ORIGIN      
        1 atttttaatc gcggtcaacc atgacatacg cgattaaaaa tcgcaaaacc caattcaatt
       61 atctataatt cagaatacaa tattccagaa cattatgctg acaatcatta tacttttact
      121 gatagtatca atgtattaaa agaactgcaa atacaataaa gggtataata atacaatatt
      181 tatatatttt caacctaaaa atccacttta tacttataaa aatctacttt taatttaatt
      241 caatcctcca actcgctgat tttatctatt ttcgtttttc ccagagaaat aattttacac
      301 atgaagaaaa actacctgat ttcgccccgg atttttaact caagactact aatcccaacc
      361 catttatttc gttatatcat aacctgttta ctattgctgc aaattacaat ttgctttggc
      421 aagcaaatca cttcggaaca gtcacttgtg atagcacaaa aattttatca gaaacacaag
      481 tcagccagtc cggcagcaaa aatcaaatca actgtatccc ctgttttcaa gctggattat
      541 attgcccggg acaaatccaa catgtcaaaa gtgaaagctc aaactgctga tactacgggg
      601 tatttttacg tatataatat tggcagtaat cagggattta tcattgtatc cggagatgac
      661 acaacaaaac caattctcgc ttattccgat gattctactt ttccgacaac caatatacct
      721 tccaatttgc agtattggct cgatttctat aaaacagaaa taaaatatgc ccaacaaacc
      781 gcattaagca ctacttcggt tgaaaacagc actttatcaa cagcaggtac tgttctggtc
      841 cagccgctgc tttcaaacat caaatgggac cagaccactc catataacct atactgcccg
      901 tttagcacta cagacaatga aagagcgctt accggctgtg tggcgactgc catggctcag
      961 attatgaaat acaaccaatg gcctgtaaaa ggtacaggta catatagtta caccgatgga
     1021 accaatggaa cgctttcggc tgattttggt aacacaacat acaactggag caatatgccg
     1081 gatggctacg gttctgtatc cactacttcg acacaggatt cggcagtagc ccaactaatg
     1141 taccaatgcg gcgtttcggt ttcaatgaac tacagtcctt cgggaagttc agctttggta
     1201 agtgatgcgg ctattgcatt gaaaaactac tttggatatg ataccgattt aaatatttac
     1261 accagagagt tctatagttc aaccgaatgg aaaaacatga ttaaaactga gctaaatgcc
     1321 tccagacttg tcatgtacgg tggaactacg ggaacatttg gccatgcttt tgtttgcgac
     1381 ggttacgata gcaacgatct gtttcatatc aactggggtt ggagcggata ttataatggt
     1441 ttttttgaat tgagtgtact gaaccctccc ccaactgaaa gcataagttc aacaggaggt
     1501 ttcagccagg gccagcagat aataaccgga attcagcgcc cagatgctat tgctaatcca
     1561 tcgtacctga taaatatgta ttcgttggga ttgacttcaa ccaagtcgac aataacaaat
     1621 attgcctccc aatcatttaa tgtcaatttc ggattcctga attacggagc aaatgacttt
     1681 aacggtaaat tcgctatcgg gctatacaag gatggcgttt ttcaaaaaac attgtcgaca
     1741 tatccaagca acgtaagttt gttagctaac tatggaacgc ctaatttcac gttatcggga
     1801 ttgtcattat caggtttggc ttcgggtacc tacaaaatct attgcattta taagccttcc
     1861 actgccagtt catggacgat aatgaaaggg tcgacattgc taaacaacta tttgaatgtg
     1921 gtggtgagtg gaactgcagc aacaattaca aaaccgtcat tggctcctgc tcttactttg
     1981 agtcaaaaaa ttacgctatc gggtaaagct
//
LOCUS       DATDNM010000363         2294 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1113069, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000363 DATDNM010000000
VERSION     DATDNM010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1113069"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..288)
                     /locus_tag="VI413_06025"
     CDS             complement(<1..288)
                     /locus_tag="VI413_06025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY6914217.1"
                     /translation="MQANQIVGATMKSPEFPQLARGSITNGGYGLGEWREEMNEKGKV
                     TIVSSPGWAGAYPWIDKKYNIYGFILTHIDKTKNGFNSMLGSPVLPYIVRDA"
     gene            complement(270..1058)
                     /locus_tag="VI413_06030"
     CDS             complement(270..1058)
                     /locus_tag="VI413_06030"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY6914218.1"
                     /translation="MNTNKSVTALLFILLNINASWAKTPVYKYDFSYLDRRITAWVDS
                     GYYQGASIIIGQGHKEIYKQYYGNYNSLTSVFVASAGKWVGAAVIAAVVDRGYLSWGD
                     KVRKWLPQFTDIKGEATLRQLLSHTSGYPSYQPKGRHTDNYQTLKQSVDSIVNLPVNT
                     VPGATFIYGGLAMQVAGRMAEVATGKDFESLFQQYIAQPLHMSSMHFTPVDNGDGHSP
                     MIGGGLRTNLQDFGNFLNMILNNGLYNNVRILSVKSIQECKPIK"
     gene            1456..>2294
                     /locus_tag="VI413_06035"
     CDS             1456..>2294
                     /locus_tag="VI413_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008156016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6914219.1"
                     /translation="MNKKSFSIAFGIIQCFLLSTFAQINKQAAFYPGGIWKDNKGVHI
                     NAHGGGVMYQKGMYYWYGEHKVAGEIGNTAQVGVHCYSSTDLYNWKDEGIVLSVVKDT
                     TSDIQKGCVLERPKVIYNAKTQKYVMWFHVEQKGKGYGYARSGVAIASKPTGPFIFRG
                     SIRSNPGKWPMNALPIHKLPVCDYVKKTYFPGNGFSGNVDSLNILGKFFDEGQMERDM
                     NLFVDDDGKAYHIYASEYNATIQIAELTDDYLSHSGKYIRAFVGRWMEAPVLFKHNGL
                     YYF"
BASE COUNT          693 a          381 c          463 g          757 t
ORIGIN      
        1 ggcatccctt acaatgtagg gcaacacagg gcttcccaac atagaattga atccattttt
       61 ggttttatct atatgggtca gtatgaaccc gtagatattg tactttttat caatccatgg
      121 ataagctcct gcccagcctg ggctgcttac aatggtaact tttccttttt cgttcatttc
      181 ttcccgccat tcgcccagac catatccgcc atttgtgata cttccacgtg ctaattgcgg
      241 aaattcaggt gatttcattg tagcaccaac tatttgattg gcttgcattc ctgaatagat
      301 tttacagaca gtattcgtac attattatat agtccattat tgagtatcat attcagaaaa
      361 ttgccgaaat cctgtaggtt tgttcttaat ccgcctccaa tcattgggct gtgtccatca
      421 ccattatcta ccggagtgaa atgcatggat gacatatgga gtggttgggc aatatattgc
      481 tgaaaaagac tttcaaaatc ttttccagtt gcaacctcgg ccattcgccc ggctacctgc
      541 atggctaatc caccatagat gaaagttgct ccagggactg tgttgactgg taaatttaca
      601 atactatcta cagattgttt caacgtttgg taattgtcgg tatgacgacc tttgggctga
      661 tacgaaggat agccggaagt atgtgagaga agttggcgta aggtggcttc tccttttatg
      721 tcagtaaact gaggaagcca ttttcggact ttatcgcccc acgacaaata gcctctgtct
      781 actactgctg ctataacagc tgcgccaacc cattttccgg cagaagctac aaatacacta
      841 gtcagggaat tataattccc gtagtattgt ttgtatatct ctttgtgccc ttgtccgata
      901 ataattgatg cgccttgata atatccacta tccacccaag ctgttattct acgatctaaa
      961 tatgaaaaat catacttata gaccggtgtc ttagcccatg atgcatttat gtttaataga
     1021 ataaagagaa gggctgtgac tgatttattg gtattcatac tgtacaagta aatctgagct
     1081 tgagtgtttt tttagttgtc aaaaatacat taaagacttc aaatcatctt ttttataaga
     1141 attaaatttg tttcaaatta taatttggaa ctttaattat aattctaaat ttaacgatgc
     1201 aattagtatt ataatgtgac tttagtggtt tttgagcaga aattacttcc atattataat
     1261 atgaaactta tttggatata aaacatgata atggaaatgt cagataaata tacttttgtt
     1321 tgcattttga cttacaacaa gaatacaatt atatatagct gtcaaattta ggtttaggta
     1381 ttcgtttaaa tacaaaaata atacacactt aaaattacgt aaaaatataa cgattcctat
     1441 tttagatatt aagagatgaa taaaaagagt tttagtattg catttggaat tatacaatgt
     1501 tttttgttga gcacttttgc tcagattaat aaacaagccg ctttttatcc gggggggata
     1561 tggaaagata acaaaggtgt tcatatcaat gcgcatggtg ggggtgtaat gtatcagaaa
     1621 gggatgtatt attggtatgg tgaacataag gttgctggtg aaatagggaa cactgctcaa
     1681 gtaggtgttc actgttattc ttctacggat ttatataatt ggaaagacga agggattgtt
     1741 ttgtcggtag taaaggacac tacaagtgat attcaaaaag gctgtgtgct ggaacgtccc
     1801 aaagttatat ataatgccaa aacgcagaaa tatgtgatgt ggtttcacgt agaacagaaa
     1861 gggaagggat atggatatgc acgcagtggg gttgcaatag cttcgaagcc aactggtcct
     1921 tttattttta gaggaagtat ccgtagcaat cccgggaagt ggcctatgaa tgcattacca
     1981 attcataagt tgccagtttg cgattatgta aagaaaacct attttccggg taatggattt
     2041 tcaggaaatg ttgattcgtt gaatattttg ggcaaattct ttgacgaagg tcagatggaa
     2101 cgagacatga atctgtttgt tgatgatgat ggcaaagcat accatatata tgcatcggaa
     2161 tataatgcaa ctatccagat tgcagaatta acagatgatt atttgagcca ttccggaaaa
     2221 tatattcgtg cgtttgttgg tcgctggatg gaagctccgg tacttttcaa acataatgga
     2281 ttgtattatt tcat
//
LOCUS       DATDNM010000364         2902 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_686540, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000364 DATDNM010000000
VERSION     DATDNM010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2902
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_686540"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1402
                     /locus_tag="VI413_06040"
     CDS             <1..1402
                     /locus_tag="VI413_06040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914220.1"
                     /translation="LYFDALDRKDKQLGPDSLIDFSINHYLSENNKLNLAKCYFLKAR
                     MYNKRQRFEDAGTYYLKSLDFLNSTDNFLLLGIIYSDLADICVLQKEHCESLKNVLKS
                     VDYFNKAGNKVETAYRVVTIGKIYRFRKNYKISHKYYKQALSITSDPMLQGFAFQEIG
                     INYYFAKQNDSAQYYLSKSLQFPYKGTNYAVRCFYLADLLYSITQYDSAFSYAKLALK
                     YPSTFFNQRECYRILANSEYHRGEFEKMGFYISKYQECVDSVRKVEIQSKVTMLEKLH
                     NNNQEASGTERSMNWTVSIFVIVLLFSSVIVYLLFRRNSIKKKQLDVYKRELNQKQEF
                     VSQNLSRKISETRNSQTEVRRNASPEERAELDTELYQKCLHLGNWNTFSCEMNHAFNQ
                     IVEVLQSDYSGITQKEITWCCLHLLDIPNADRILLLNATTDSIYKLKQRLAQKMNLKS
                     TKELDAFLKMHVSFKS"
     gene            complement(1944..>2902)
                     /locus_tag="VI413_06045"
     CDS             complement(1944..>2902)
                     /locus_tag="VI413_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEY6914221.1"
                     /translation="TVTAVTDLFDVLISQSNRYKEVLLPGYTHLQVAMPSSFGLWFGA
                     YAESLADDLQLLLSAWKITNRNPLGSAAGYGSSFPLDRQLTTDLLGFDSMNYNVVYAQ
                     MGRGKMERIVATALASVAATVAKLAFDACMFTSQNFGFIRLPDEFTTGSSIMPHKKNP
                     DVFELTRAKCNKLQSLPQQIMMITNNLPSGYFRDLQIIKEVFVPAFAELTDCLEMTAM
                     MMAHVEVNTEILSDSRYDYLFSVEEVNRLTLSGIPFRDAYKQVGFEIEAGNFKPNKEV
                     NHTHQGSIGNLFNDEICIYKDSVLNEFSFEKVRDAVKTLLKK"
BASE COUNT          911 a          510 c          543 g          938 t
ORIGIN      
        1 gttgtatttt gatgcattag acagaaaaga taaacagttg gggcctgatt cacttattga
       61 tttttctatt aaccattatc ttagtgagaa taataagctc aatcttgcaa agtgctactt
      121 tttaaaagca agaatgtata ataaaagaca gcgttttgaa gatgctggga catattattt
      181 aaaatcgctg gactttctta attctactga taattttctt ttgttgggta taatttattc
      241 tgatttagct gatatatgcg tcttacaaaa ggaacattgc gagtcgctaa aaaatgtttt
      301 aaaatctgta gattacttca acaaggcagg aaataaagtg gaaacagcct atagagttgt
      361 aactattgga aagatttatc gcttccgaaa aaattataaa atatctcata agtactataa
      421 acaagcgctt tccataactt ctgatcccat gcttcaaggt tttgcatttc aggaaatagg
      481 gattaattat tatttcgcaa aacaaaatga ttcagctcag tattacctgt ccaaaagctt
      541 gcaatttcca tataaaggga caaattatgc tgtcagatgt ttttatttgg ctgatttgtt
      601 gtatagtata acgcagtatg attcagcttt ttcttatgct aaacttgctc tcaaatatcc
      661 atctaccttt tttaatcagc gagaatgtta tcgcattttg gctaattcgg aatatcatcg
      721 aggtgagttt gagaaaatgg ggttttatat ttctaaatat caggagtgtg ttgactccgt
      781 acgtaaagtg gaaatccaat caaaagtgac catgttggag aagttgcaca ataataatca
      841 ggaagctagc ggtactgaac gaagcatgaa ctggaccgtt tcaatattcg taattgtttt
      901 attgttttct tctgttattg tctatttgct ttttcggaga aatagtatca aaaagaagca
      961 attagatgtt tacaaacggg agttgaatca aaaacaagag tttgtaagcc aaaatttatc
     1021 cagaaaaatt agtgaaaccc gcaactcgca gacagaagtg agaagaaatg cttctcccga
     1081 agaacgcgct gaacttgata cagaacttta tcagaagtgt cttcatctag gtaattggaa
     1141 tactttttcg tgtgagatga accacgcttt taatcaaata gttgaagtgc tgcaatcaga
     1201 ttattccggc attacccaga aggagattac atggtgttgc cttcatttac ttgacattcc
     1261 aaatgctgat agaattctgc tcctcaacgc cacaacagat agtatatata aactgaaaca
     1321 gcgattggct caaaagatga atctcaaatc caccaaagag ctggatgcat ttctaaaaat
     1381 gcatgtgagt tttaagtcgt aataattttc aatccttctt gcttgattta acctactatt
     1441 taactctttt ttgacgcatt ttttacgatg tccaaaaatt actgttaccg aaaaaataag
     1501 ttgcactaaa tcaattgttt ataaatactg atgtccaaaa tatttctccc cgaaatttgg
     1561 ctacattcta tgtaatgtct aatttagcaa tgaaatcaaa caacaatatg aactgtatta
     1621 tttacatttt ggttcagttt gttttgcgga aatttcgaag caatagttaa agacgtttgg
     1681 cggcatagtt tgtatgggta tagtgaacat agtgtatttt gtttgtcttc gcagcctaaa
     1741 ccttcccaat gaggacgcag tacagctcgt aatttagtgt gactatgccg ctgaaccttt
     1801 tatcaattgt aagttgaaat atgcagattt gttgaacaca taaaacccgt tattgaacta
     1861 aatgattcaa taacgggttt atgcgttaat aataaaaatc agttggttga tttagtatag
     1921 aatttgagta ttggagtgtc aggttacttc tttagtagcg ttttcactgc atccctcacc
     1981 ttttcaaaag aaaattcatt caaaacagaa tctttgtaga tgcaaatttc atcgttaaac
     2041 aaatttccga tacttccctg atgggtatga ttcacttctt tgtttggttt gaaattaccg
     2101 gcttcaatct caaaccccac ttgcttgtaa gcatctctga atggaattcc ggataaagta
     2161 agcctattaa cctcttctac actgaaaaga tagtcgtagc gtgagtctga tagaatttca
     2221 gtattaacct caacatgtgc catcatcata gcggtcattt caagacaatc ggtaagttcg
     2281 gcaaatgcag gaacaaatac ttctttgata atctgtaagt cgcggaaata acctgaaggc
     2341 agattattgg ttatcatcat tatttgttgt ggaagcgatt gcagtttgtt gcattttgct
     2401 cgtgtcaact cgaaaacatc cggatttttt ttgtgcggca taatactcga accggttgta
     2461 aactcatcgg gcaggcggat aaatccaaag ttttgtgatg taaacatgca ggcatcaaaa
     2521 gccagtttgg ctacagtagc agcaacactt gccaatgccg ttgccacaat gcgctccatt
     2581 tttccacgtc ccatttgtgc ataaaccaca ttgtaattca tgctgtcgaa tccaagcaga
     2641 tctgttgtaa gctgacgatc aagcggaaaa gatgacccat aacctgctgc agaacccagt
     2701 gggtttcgat tggtaatttt ccaggctgaa agcaacagtt gcaagtcgtc tgccaagctt
     2761 tcggcatacg ctccaaacca tagtccgaat gacgaaggca tggcaacttg caggtgtgta
     2821 tagcccggaa gaagaacttc tttgtatcta ttgctttgcg aaatcagaac atcgaataaa
     2881 tctgtgactg ctgtaaccgt tt
//
LOCUS       DATDNM010000365         5829 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_580351, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000365 DATDNM010000000
VERSION     DATDNM010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5829
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580351"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..696
                     /locus_tag="VI413_06050"
     CDS             271..696
                     /locus_tag="VI413_06050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914222.1"
                     /translation="MDQFLENETTTQKIYKERAIWTGTFLGGPLVAGYLIAENFKVFN
                     QHDRVRKTWIYSIIATIVIFGGVFLIPDTVKIPNQIIPLIYTIIASQIVQVYQKAKIT
                     THINAGGQVYSWWRTIGVGLIGLVITVIIVFGIAMLTAL"
     gene            complement(691..876)
                     /locus_tag="VI413_06055"
     CDS             complement(691..876)
                     /locus_tag="VI413_06055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914223.1"
                     /translation="MSDEGASLDGFSQLNASFSREAGEVLTFLLTFCGKTKSKSGFGA
                     EAPVKETSLFQMNHYEL"
     gene            1100..1753
                     /locus_tag="VI413_06060"
     CDS             1100..1753
                     /locus_tag="VI413_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914224.1"
                     /translation="MKTTLLTVISLILTVCAFATSQIPDKIIYKGQEYSLNSNPLETF
                     FEKNPDLKPKCEMMSTALWRGYIATFEIRDNQLFVKDITVMDEDTITGSHKTTWRSVF
                     NQVFPDQKQVKVDWMTGLLVIPNGKLVNYVHMGYASTYENYILLEIDKGNLIQEKSMK
                     AKEYEKFKDKQFKAFQKTDEYKKLKEDLKKNGGGTDEFLDSFIRIYVTDYSTKILTE"
     gene            1787..2233
                     /gene="arr"
                     /locus_tag="VI413_06065"
     CDS             1787..2233
                     /gene="arr"
                     /locus_tag="VI413_06065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010257556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)--rifampin ADP-ribosyltransferase"
                     /protein_id="HEY6914225.1"
                     /translation="METNKSENKPIESPQNISAERFYHGTKANLKPGDLIEPGFNSNY
                     GKRKKASYVYLTATLDAATWGAELATGEGPGRIYIVEPTGPIEDDPNLTDKKYPGNPT
                     KSYRTRNSLRVTGEITDWQGHPAEQLNAMKEHLEHLKKLGIEAIED"
     gene            2337..3008
                     /locus_tag="VI413_06070"
     CDS             2337..3008
                     /locus_tag="VI413_06070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914226.1"
                     /translation="MKKLSLFFCLLVFLVSCGNEIDYSATYTSDKFETGDVRLFTKNG
                     EIKNSSTISSFLSRHKGRYFESSSMTNSYLQSSVTLQFLSATDAKLTYGNVQLLTVIT
                     KSNLIYLESKDTTYTGQRYYDYPGASESIYNAMLKYSPLYNDTVLLANSDYNYFIRTK
                     QCFYMTQSGNELKMPFMSYYYHEPYGEHSGTFINNCFNVDCIKLMASNDTLAIQQAQL
                     VLKKK"
     gene            3341..4081
                     /locus_tag="VI413_06075"
     CDS             3341..4081
                     /locus_tag="VI413_06075"
                     /inference="COORDINATES: protein motif:HMM:NF025679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4382 domain-containing protein"
                     /protein_id="HEY6914227.1"
                     /translation="MFVLFLGLQFVFVSSCSNDKEKSHLSVSMTDAPGNYDAVMVDVQ
                     SVEVIGSNGNTITLNTNNRIYNLLNLSNGVDTLIATGDLDPGTISQIRLILGANNSVT
                     KDGVVYPLSTPSAMQSGLKLAVNKTFEPGVTYRILLDFDANQSIVVTGNGTYQLKPVI
                     RTVETAVNGSIKGSISLIGVIATVEAKSNGVTYSSVTNANGQFLIAGLPAGNYDVTIT
                     PDLPLLPVTKTGVAVTLGVSTNVGLIAL"
     gene            4317..>5829
                     /locus_tag="VI413_06080"
     CDS             4317..>5829
                     /locus_tag="VI413_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YgiQ family radical SAM protein"
                     /protein_id="HEY6914228.1"
                     /translation="MQPTIYQLTDFLPTTKKELEIRGWDEVDVVFFTGDAYVDHPAFG
                     AAVIGRILEAQGLRVAIVPQPNWRDDLRDFKKMGRPRMFFAVSGGNMDSMVNHYTANK
                     RLRSDDAYTPDGKSGMRPDYATITYSNIIKKLYPDVPLLIGGIEASLRRYTHYDYWSD
                     KLMPSILADTKADLLVYGMGEKPIVEIVNKLREGKTFKELIDIPQTSYLSKEIPAHPK
                     WKDFELVSHEVCLKDKKLYASNFKHIEKESNRFEANRLLQKTGNRWVIVNPPYEPLKE
                     AELDASFDLPYTRVPHPKYKGKTIPAFEMIKFSVNMHRGCFGGCSFCTISAHQGKHIV
                     SRSKESILNEVKQITRMPDFKGYLSDLGGPSANMYQMKGKKMYICRQCQKPSCIFPKV
                     CFNLNTDHKPLLDIYRAVDSLPGIKKSFVGSGVRYDILLDRTDDPEVNKTHDEYIKEL
                     ITNHVSGRLKIAPEHTSDEVLNMMRKPSFAYFGEFKKKFERINREAGLNQQLIP"
BASE COUNT         1917 a         1074 c         1180 g         1658 t
ORIGIN      
        1 aaaataattg aaatgattta tcaggaaatg aaaaaaatca acaaagaaga ggattttaat
       61 aaaatcgcca ggaaaatggg gatagagatc atataacctc tgttgttcgt agcgtttggg
      121 tttcctgtta ttcgtggctt agttgtgcaa cagccgcgag acgctatgcc gaacatagga
      181 ttcataaact gataaagaag taatatgcca cgcggtacaa tcgtacggca gcagctagct
      241 ggtagtaact tataaaaaaa atataaaaac atggaccaat ttttagaaaa cgaaacaact
      301 acacaaaaaa tttacaaaga aagagcaatt tggaccggaa catttcttgg tggaccttta
      361 gtagccggtt atttaattgc agaaaacttt aaagtattca atcaacatga tagagtaaga
      421 aaaacctgga tttattcaat aattgcgaca attgttatat ttggaggagt ttttttaatt
      481 cctgacactg tcaaaatacc aaaccaaatt attcctttaa tttatacgat aattgcttct
      541 caaatcgttc aggtttatca gaaagcaaaa atcacgacac atatcaatgc cggtggacaa
      601 gtttatagtt ggtggagaac aatcggtgtt ggactgattg gactcgtaat tactgtaatt
      661 attgtttttg gtattgctat gttgactgct ttataactca tagtgattca tttggaataa
      721 actagtttct tttaccgggg cttccgcccc aaaccccgac ttactttttg tcttaccaca
      781 aaaagtaagc aaaaaagtca agacttcacc cgcttccctc gaaaaactgg cgttcagttg
      841 gctgaaaccg tccaaactcg ctccttcgtc gctcaaacag gactgtttca aacgccaact
      901 tcactggttt ttcggctcac cggatgaggt cactcgttga ctaactatgt gcgattcaat
      961 atcttttatc tacttattaa aatacctatc aaatgactat gggtttttat aatgagaaca
     1021 aactaaagac taaaataata gaacaaaata ctgctggaac gcacttttgt ttgatgtcat
     1081 attaaaaatt aaatatacta tgaaaacaac cttattgaca gtgatttccc ttattttgac
     1141 tgtttgtgct tttgctactt cacagattcc ggacaaaatc atttacaaag ggcaagaata
     1201 ctcattaaac tccaatcctc ttgaaacttt ctttgaaaag aatccggatt tgaagcctaa
     1261 atgcgaaatg atgtcaacag ctttatggcg tggttatatt gcaactttcg aaatacgaga
     1321 caatcaactt tttgtcaaag atataaccgt tatggacgag gatacaataa ccggctctca
     1381 caaaacgaca tggagaagtg tatttaatca ggtatttccc gatcaaaaac aagttaaagt
     1441 agattggatg accggattgc tcgttattcc gaatggaaaa ctcgtcaatt atgtacacat
     1501 gggctatgcc tctacgtatg agaactacat tttacttgaa atcgacaaag gaaatttaat
     1561 tcaggaaaaa agtatgaaag ctaaagaata tgaaaaattc aaagacaaac aatttaaagc
     1621 ttttcagaaa acagacgagt ataagaaact gaaagaagac ttgaagaaaa atggtggtgg
     1681 aacggatgag tttcttgact cgtttataag aatatatgta acagattact ctactaaaat
     1741 attgacagaa taaaaaatac gaatatcaaa caatcatata acaacaatgg aaacaaataa
     1801 aagtgagaac aaaccaatag agtctcccca aaatataagt gcagagagat tctatcatgg
     1861 cactaaggcc aatctaaagc cgggagacct gattgaaccc ggatttaact caaattacgg
     1921 caagaggaag aaggcgtcgt atgtatatct gaccgctact ttggatgctg ccacctgggg
     1981 agcagaactt gctactggcg aaggacccgg cagaatttat atagttgagc cgacaggccc
     2041 gatagaagat gatcccaatc tgacagacaa aaagtatccg ggaaatccga caaagtcgta
     2101 ccgtacccgg aattcgcttc gggtgactgg tgagattaca gattggcagg gacatcccgc
     2161 ggaacagctc aatgctatga aagagcatct tgagcatctt aagaaactcg gtattgaggc
     2221 aatcgaggat tgagtaagac agtgaaatta aacgggtatt tcaggtatta aagtaacatt
     2281 atgaccacga actgtcattg aaatgattcg taatgtctta catttaaaat aatcaaatga
     2341 aaaaactttc tctgtttttc tgcttacttg tttttctggt ttcctgcggg aatgaaatag
     2401 actattcggc tacctataca tccgataaat ttgaaacagg agatgtacgg ttgtttacga
     2461 aaaacggaga aataaaaaac agcagcacca taagcagttt tttatcccgg cataaaggcc
     2521 ggtatttcga aagtagctct atgaccaaca gttatcttca atcgtcagta acattacagt
     2581 ttctatcggc tacagacgca aaattaacct atggtaatgt ccaattgctg actgttataa
     2641 caaaaagcaa tctgatctat ttagagtcga aagatactac ttatacaggt cagcgatatt
     2701 atgattatcc cggggcttcg gaaagtatat ataatgcgat gctcaaatat agccctcttt
     2761 acaatgatac ggttttattg gcaaattcgg attataatta ctttatacgg acaaaacaat
     2821 gtttttatat gactcaatcc ggcaatgaac tgaaaatgcc atttatgtct tactactatc
     2881 atgaacccta tggggagcat tcgggtacat ttataaataa ctgttttaac gtggattgta
     2941 ttaaactcat ggcttcaaac gatacactag ctattcagca agcacaattg gtgttgaaga
     3001 agaaatagga ggatgcatcg tcctgattaa tatatgaagc tatattgatt aaataatctg
     3061 tcaattttca ataccggcaa gattaaatag tacaataaac ccttgctgaa tttcgttttg
     3121 aaatttagca ggggttgttt tttagtggaa actaatcaaa tccagcagct tagtatttca
     3181 gtaaatgtga atcatgtaac aacttgcata aattgtgtaa cagctatgca cgtaaatggc
     3241 ctcatctttg ctgagtaaat taattattaa acatttaaaa tcaaacaaca tgtatttgac
     3301 aaaaaacaaa aagaaagaaa tcataattct aaagaaaatt atgttcgtat tatttctggg
     3361 tttacaattt gtatttgtaa gttcttgtag taacgacaaa gaaaaatcgc acctatcggt
     3421 aagtatgaca gatgcccccg gaaattatga tgcagtaatg gtggacgttc agagtgtaga
     3481 agttattggt tctaacggaa atacgataac tctcaatacg aataaccgta tctacaacct
     3541 gctgaatctt tcgaatggag tagacaccct tatagcaaca ggtgatttgg atcctggaac
     3601 aatttcgcaa atcagattga tactgggagc aaataattcg gtaacgaaag atggagttgt
     3661 atatccactt agtacgccaa gtgctatgca gtcgggattg aaactggcag ttaataaaac
     3721 attcgaaccg ggtgttacat atagaatcct gcttgatttt gatgcaaatc aatcaattgt
     3781 tgtgacaggt aatggtactt atcaattgaa acctgttatc agaactgttg aaacagctgt
     3841 aaacggttct ataaaaggca gtatttctct aataggggtt attgcaactg tcgaagcaaa
     3901 atccaatggg gtaacttata gttcggtaac caatgcaaat gggcagtttt tgattgccgg
     3961 attgcctgca ggtaattatg atgttacaat tacaccagat cttccattgc ttccggttac
     4021 aaaaaccggt gtagcagtta ccctcggtgt ttctacaaac gtgggattaa ttgcgctgta
     4081 aaatttcaat ttttatcatt aaagaacagc tccggtaaaa tggagctgta ttttttgtat
     4141 aagtttcagt gcctggcgca agtttagaga aacgtaactt tccgatagaa atataagtaa
     4201 accataactc cgataaatcg ggtttacact cacaaattat ttccgtacct ttgcggcata
     4261 atacgctgct gttgaaccaa accggcagaa aagcgtttta accgcaaaaa gattttatgc
     4321 aacctactat atatcaactg accgactttc tgccaacaac caaaaaagaa ctcgaaatcc
     4381 ggggctggga tgaggtggat gtggtcttct ttaccggtga tgcttacgtg gatcatcctg
     4441 ctttcggagc ggctgtaatc ggccgtattc ttgaagcgca gggattgcgt gtggctatcg
     4501 ttccacagcc taactggcgc gatgatttgc gcgactttaa gaaaatggga cgcccacgca
     4561 tgttcttcgc agtgtcgggt ggcaatatgg attccatggt gaaccattat acggccaata
     4621 aacgcctgcg ttccgacgat gcttatacgc ctgacggtaa gtcgggtatg cgtcctgatt
     4681 acgctaccat tacctactcc aatatcatta aaaaactcta tccggatgtt ccgttgctta
     4741 ttggtggcat tgaagcgtcg cttcgccggt atacacacta cgattattgg tcggataagc
     4801 ttatgccaag tattttggcc gatacaaaag ccgatttgct ggtgtatgga atgggggaga
     4861 agcctattgt tgaaattgtg aataagcttc gcgaaggaaa aaccttcaaa gaactgattg
     4921 atataccgca aacgtcttat ttgtcgaaag aaattccggc tcatcctaaa tggaaagact
     4981 ttgaattggt atcgcacgag gtttgcctga aagataaaaa gctatacgcg tctaatttca
     5041 agcatattga gaaagaatcg aaccggtttg aggctaaccg cttgctgcaa aaaaccggaa
     5101 accgttgggt gattgtaaac ccgccctacg aaccactgaa agaagctgaa ctggatgctt
     5161 cgttcgattt gccatacacg cgtgtcccgc accctaaata caaaggtaaa accattcctg
     5221 ctttcgaaat gattaagttc tcggtgaata tgcatcgggg ttgttttggt ggatgctcgt
     5281 tttgtaccat ttcggctcat cagggcaagc atattgtttc gcgttccaag gaatccattc
     5341 tgaatgaggt gaagcaaatt acgcgaatgc ctgactttaa aggttatctg agcgatttgg
     5401 gaggtccgtc ggccaatatg taccaaatga agggcaagaa gatgtatatc tgccgccaat
     5461 gccagaaacc gtcctgtatt ttcccaaaag tttgtttcaa tctgaatact gaccacaaac
     5521 cgctgttgga tatttaccgg gcagtagata gtctacccgg aatcaaaaaa tcttttgtgg
     5581 gcagtggtgt tcgttatgat attttgctcg acaggacaga cgatccggaa gtaaataaaa
     5641 cccacgacga atatatcaaa gaactgatta cgaaccatgt gtcaggacgc ttgaaaatag
     5701 cacctgaaca tacgtcggac gaagtgctga atatgatgcg caagccaagt tttgcttatt
     5761 ttggtgagtt taaaaagaag tttgagcgaa ttaaccgcga ggccggcttg aatcagcaac
     5821 ttattccat
//
LOCUS       DATDNM010000366        13026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1969236, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000366 DATDNM010000000
VERSION     DATDNM010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 13026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13026
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1969236"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1727
                     /locus_tag="VI413_06085"
     CDS             <1..1727
                     /locus_tag="VI413_06085"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6914229.1"
                     /translation="RLWPEINVNRTSDIASESFIVQTFNKLIYTPKLNDKNDILGLLQ
                     YSTYDARYSSFREASALTASTFLQDPSIASQIVGTGLGLKSGASQARSLSLLGMLQYK
                     FMDRYIINGTVRRDGDSKYSEKNRFGFFPSLSFRWRVSGEKFMSEMKFVDDFSFRAST
                     GVSGNPVSKNYLYYNNYSTFDYTYLGEQGVYSNGLQLSNLRWEKVTDFNVGANLIMLK
                     NRLNIDFNWYKKRTNDLYFEKVTIPSTSGFTTIGANVGTMDNKGWELSINSQPVKSKD
                     WQVDFNFTFARSENEVKSLSDMIPQISTPSAVNGSYLTKIQVGNPLGSFYGYKYDGVY
                     LNESQTIAKDKNGSPIYTYDSNGNKEAVQMKFWYPSVGYVFQPGDAKYVDINHDGNIN
                     SQDIVYLGSVNPLLTGGFGPTIRWKSKLSLTAYFYFRYGGKVINQTRIEMENMYGFNN
                     QSTAVLRRWRHDYADESTAPVDLLPRALLSKGYNWLGSDRYVEDGSFLRFKSLTMSYS
                     FDKKLVKKAGLSDLRLWTTMQNIYIWTNYSGMDPEVTLRSGLTDLGKDTSRSGRPTEY
                     SLGLTVSF"
     gene            1748..3346
                     /locus_tag="VI413_06090"
     CDS             1748..3346
                     /locus_tag="VI413_06090"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914230.1"
                     /translation="MKKYIGFLFTVILMSLLSSCSDWLTLSPEDGVIREEFWQTKEQV
                     NSAVVGCYASVLDGPVEKMFLWGELRADMIDNGVSPINNYAEVIDGEISASNSIVSWA
                     DLYQTINNCNTVLKFAPTVRDIDGTFTEKQLKEYEAEALTLRAMMYFYLVRSFHDVPL
                     ILNASVTDDQNYSIPKTSGEAILDTLVHDLKIAAANAPASYSTTAKNKSRITSWTAKT
                     LLADIYLWQEKYAECNSLCQEIIGSGKFSMIPVEKVNVPVSEGGVAIDTVTIANESDA
                     DGMFIQSYVNGNSIESIFEIPFTNIKQNPFYAMLGPTVNRLKPKLDVIDGTIFPPALY
                     QIVSDASDIRGSGCSYRAGVVWKYVGTSRTGAVRASTEYTAPWIVYKYSDVLLMKAEA
                     LNQMGLQTHDESAQNYYKQAVEWMSIVRNARNAVGTSEYKFTGDIDGKILENAILSER
                     AREFAFEGKRWYDVLRYAKRGNYEGTNIQYLLNMAINSASPQKQQSLIAKYKDPKHNS
                     HYWPIYSSELEANKNLKQNEFYAQ"
     gene            3360..5147
                     /locus_tag="VI413_06095"
     CDS             3360..5147
                     /locus_tag="VI413_06095"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6914231.1"
                     /translation="MKTKNINLQAKIGLILMFGATMAIFSSCVDYMQGKTFLTSDERM
                     IDEYIEQKDTSMSEFLHIADVAGFRGMLHAYGTNTCFIPSNEAIAVYCQRHGIDSMET
                     LPVEELEKFIKFHIVRDTIRTAQFIDGRLDRATMLGKFLTTKTVQNGDEAPVIRVNRQ
                     ANILKRDISVANGIIHKIDYVLTPNPKTVGEMIEQLPENYSLFKSIMEESGLIDTLTN
                     NIAAGVWYTAILQSNESFSTQGITTRSDLIEKMKVAQPDFANDETKLLNMFAQYHCIN
                     RLAYVADLSITSAELTLATNQVITFKTNKDSLILNEFKTLTKFEKGVTVNKSSDWTDM
                     SCSNGVMIDLDGYIQPVKRGAEAIYWELTDQPEIKKLKEYRKRGSFVTFKPGELSELS
                     FGGKNNPTITYNVSSSYVAQGGQYVHYDYFEIPMRPTLLQWMEIKTPVLTEGVYNVWI
                     CWRRGGDNNKFKTTFKQEGKEDQVLPNVFDLGEYFNTSNTPEVNLNNGMKQYNAKAKN
                     SVVCSRNCGAIKVEYTGRHTIRIDALSGNSQPAWWDMIQFIPVDQNQLWPRFDVEGNA
                     IYPMENDSLKLNCAKIAPYDQPCSGDLSN"
     gene            5200..6837
                     /locus_tag="VI413_06100"
     CDS             5200..6837
                     /locus_tag="VI413_06100"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6914232.1"
                     /translation="MVPLLAIGLLMTGCYENAWEDHVAKDQLLKNNLVEAIGTKAELS
                     TFLSMLKKTGYDKVLESANSLTVFAPANSAWTGIDTTNVDQMRKVVGALIVYKSYFTD
                     NSKIFGTLKSVNGKNISYDSETQTFNGAKIINPDIRTANGVIHITDKIVERKDNIWEF
                     LSGKTDNSQYIFINSLNKKVMDPDKSIAVRVGTDGKTIYDTVWMNINNFLKKYPIDNE
                     DSTYTYIVVENEGFNMLYNKYKNYFKMATEFQTDSTTRFNVCQDMVFKGVVDITQFDT
                     LTNVDGVKVPVNGVTIKETYNSSNGRVYVINQTNIRLKDKIKPIKIEGEAYSSASDAN
                     YVFTRYKLWASGERDIAMAGGETQTDTIYRRLTGVRDSIVSKTYFVNSNLVANINNFS
                     IAYKANVNSTNYDIYYVAYDDIADHFDPTYTNFGVYKIVQKLFISMPGGNPLKYGITD
                     NARGVANNYLGEARCFVGQGMAGVHEITKLKQWNLVATTQLLDIPVTTANADVMTVPK
                     TGTLTMWLCNTARSNTASRHGLIFLDYILLVPRIVEE"
     gene            6859..10029
                     /locus_tag="VI413_06105"
     CDS             6859..10029
                     /locus_tag="VI413_06105"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6914233.1"
                     /translation="MKQLKYILSTILFVIGFNLSLSAQKGIIATNISGTVYESATGKP
                     LSGAKVSIPDVTSTTTGENGQFKLSKTIKGAYLVVYAPGYAPKRIPVLNAENIKVWLL
                     DDSYKGKYEDIATPFEMINAANSTNAISTHENRDDYKLGATTVEQVLQGSVNGLNTVS
                     KTGAPGAGSNMYLNGFNSLNANAQPLVIVDGIPYENQTIYSLITGNNVSALSDIDVKD
                     IDNITVLKSGASIYGSKASNGAIIINTLSAKDAATRINFYAYSGVNLEPNTQYKMMDG
                     WSYKNYLTDMLSNYGLSANAIQSYPFINSEKPMVENWGISGNKDYYRYNQSTNWQQEV
                     FNSSINQNYHLNVTGGNDAALYAISFGYLGQGGSVDKTSFSRYTTRVNAKIKMTDWFK
                     LNANMSFVYSERNLAYEGLNRNFNPVYAGLVKAPFESPYVYNVAGEKTPNLEEADIFG
                     VSNPRAIIDNSLTESNRFRFFGNLNGIISFSKYLDASVLVGLTTDKASENVFMPQAGI
                     YHTALPTSYVTNESQQLRNHLLQINADAHLTYKRTFNYIHDLSVHLGTRYQSSSSELD
                     WGKAYNTSSDEMKTLGDGTSILAQMGGSLGNWNTISNYLNVDYGYQNRYFVSFNGALD
                     GSSRFGKDAVDGISAFGNKFGLFPSVNAAWLVTAEDFMKNQQVFDVLKLRAGYSVTGN
                     DDIGNYSARSYYTAQGFMGAYGLVRGNIPNTKLQWETNRKEVFGVDASFLKERLNASI
                     DLFIGQTDNLIGIKKISTLSGIGMAIYNDGKLQNSGIDVNINGRILDSKNFKWDMGLN
                     ISKYKNMLLAMSEDETFNQIAGATIRTKIGAPIGQFYGYQTNGVFSTQAEATAAGLKI
                     HNTDGTEMPFTAGDMKFVDRDGNHIINEADMTVIGDPNPDFVGSFTNRLQWKRFTLNA
                     LFGFSVGNSVYNALRANLESLSNLDNQTIAAIYRWRVDGQVTNTPKAVWGDPMHNSRF
                     SDRWIEDGSYVRLKSITLAYDLPLKTGFINSAQIYVTGNNLLTFTKYLGYDPEFSTGV
                     SPLYYGIDSGVSAQPRTILVGIKVGL"
     gene            10121..12007
                     /locus_tag="VI413_06110"
     CDS             10121..12007
                     /locus_tag="VI413_06110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914234.1"
                     /translation="MKLYKIATGLALYALLSVSLTSCQDLLETNAKEVVEESENFHNV
                     YDADNAIWGLYGKVSNLAENVVVLNELRADLMDVTSNATVDQVNLNNHSEDATNKYCN
                     PAPFYEVILNANDILHNFDKMLAENKISKENYDPRYSDVMAIRSWAYLQLGIQFKDVI
                     YVTDPLQSVESLNDSTNFPKKSLDELIPQLISDMESVPTKETNTLSSYYGKTITDNSK
                     SFYLNLQFIDKHILLGDLYLWNDQYVDAATQYKAYMDAADLSSSKTNIKNKISTWVWN
                     GSNEPRFQITYQRFKDQDVTSFRNMWKEIFYRGSTDAGTSGTIGLQDEMIWMISFSGS
                     STSVSPFVKLFANTGVGEYQLKPSAYAIDSLWETQVQQSNGFVFDGRGRESSFDYVNG
                     QPVVLKYLYDYYASVTTDANKTIHLNYDFNRYSKPGKWFLYRAALLHLRYAEAANRAG
                     YPRLAYALLNNGIKTNYDWRKSDGTFRADKAGVQYTSFPPTSDTEPARPYPAPFYLDA
                     RQNDAPYAFLRSPWRDNGGIRGRAFLNNIPTPDYVHDGIGDDHNDSIQWIEKALIQEA
                     ALECGLEGQRWGDLLRVARRNSKDGKGTVSVLMNDAVAHKFRAAGKGAATITESNLFL
                     PMKK"
     gene            12806..>13026
                     /locus_tag="VI413_06115"
     CDS             12806..>13026
                     /locus_tag="VI413_06115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914235.1"
                     /translation="MTNYQNALLASYDKILIECDKAPEAVAKISLFSKKMARVRVIVA
                     EIKGLSPQQEEITTGITTEKNILLEEVTDL"
BASE COUNT         4290 a         2444 c         2624 g         3668 t
ORIGIN      
        1 ggcgtttatg gccggagata aatgtgaaca gaacaagtga tattgcatca gaatctttta
       61 tagttcagac gttcaacaaa ctgatctata ctccgaaact gaacgacaaa aatgacattt
      121 tgggtttatt gcagtacagt acatacgatg cgcgttactc atccttcagg gaagccagcg
      181 cattaactgc ctctactttc ttacaggatc cgtctatagc atcacaaatt gtaggtaccg
      241 gtttaggatt gaaatcggga gcatcacaag cccgttcatt atccttattg ggaatgcttc
      301 agtataaatt tatggatcgt tatattataa atggtacggt acgccgcgat ggagactcca
      361 agtacagcga aaaaaaccga tttggattct ttccaagttt atctttccgt tggcgtgttt
      421 ctggagaaaa attcatgagc gaaatgaagt ttgtagacga ttttagtttc cgtgcttcaa
      481 ccggtgtgag cggtaacccg gtaagtaaaa attacctcta ctacaataac tattctacct
      541 ttgactacac atacctcgga gaacagggcg tatattcaaa cggtcttcag ttatcaaacc
      601 ttcgttggga gaaagtgact gactttaacg ttggtgctaa ccttatcatg cttaaaaacc
      661 ggttgaacat cgattttaac tggtataaaa aacgtactaa cgatttgtat ttcgaaaaag
      721 ttaccatacc ttcaacatcc ggctttacaa ctattggcgc caatgtgggt acgatggata
      781 acaaaggttg ggaattaagt attaattccc aacctgtaaa atcgaaagat tggcaggtag
      841 atttcaattt cacatttgca cgttccgaaa atgaggttaa gagtctatcg gacatgattc
      901 cgcaaatatc tacaccttcg gctgtgaatg gatcttacct cactaaaatt caggttggca
      961 accctctcgg gtcattctac ggatataaat acgacggagt ttatctgaat gaaagccaga
     1021 cgattgctaa agataaaaac ggtagcccta tttacaccta cgattccaac gggaataaag
     1081 aagcggtaca aatgaaattc tggtatcctt cagttggtta tgttttccag cccggtgatg
     1141 ctaaatacgt agacatcaat cacgatggaa atatcaactc acaggatata gtatatctgg
     1201 gaagtgtgaa tccgttatta accggtggtt ttggtcctac aattcgctgg aaaagcaaat
     1261 taagcctgac tgcttacttc tacttccgtt atggcggtaa agtaattaat caaacccgta
     1321 tagaaatgga aaatatgtat ggattcaata atcaaagtac tgctgtgttg agaagatgga
     1381 gacatgatta tgcagatgaa tcaacagctc ctgttgattt attgcccaga gctttattat
     1441 caaaaggata caactggtta ggttcagaca gatatgttga agatggttca ttcttacgtt
     1501 ttaaatcgct gacaatgagc tattcattcg acaaaaaatt agtcaaaaag gcaggattaa
     1561 gtgatttgcg tttatggaca actatgcaaa acatctatat ttggactaat tattcaggaa
     1621 tggaccctga agtaaccttg agaagtggcc ttactgacct gggaaaagac acttctcgct
     1681 caggacgacc aactgaatac tcattgggat taaccgtttc attctaacaa ttaaattcta
     1741 acgatttatg aaaaaatata ttggcttttt atttacagtc attttaatgt cactccttag
     1801 ttcctgttcc gattggttaa ctttatctcc ggaagacgga gtaatcaggg aagaattctg
     1861 gcaaactaaa gaacaggtta attcggctgt tgtaggttgt tatgcatctg tattagatgg
     1921 accggttgaa aaaatgttct tatggggtga gcttcgtgca gatatgattg ataatggtgt
     1981 atctcctata aacaactatg ctgaggtaat tgatggtgaa atttcagcat cgaattcgat
     2041 tgtaagctgg gctgacttat atcaaacaat aaacaattgt aatacagtat tgaaatttgc
     2101 tcctacagta cgtgatattg atggtacatt taccgaaaaa caattgaaag aatatgaagc
     2161 ggaagcactg acacttcgtg ccatgatgta tttctatctg gttcgttcgt tccatgatgt
     2221 tccgttgata ctcaatgcct cggtaacaga tgatcagaac tattcaattc caaaaacttc
     2281 gggtgaagcc attctggaca ccctggttca cgatttgaaa attgcagctg caaatgcacc
     2341 ggcttcttac agtaccacag ctaaaaacaa aagtcgaatt acttcatgga cagctaaaac
     2401 tttattggcc gacatttatc tctggcagga aaaatacgct gaatgtaatt cactttgcca
     2461 ggaaatcatc ggttcaggta aattcagtat gatccctgta gaaaaagtta atgttcctgt
     2521 ttccgaagga ggagtagcca ttgatactgt tactattgct aacgaatcag atgccgatgg
     2581 catgtttatt caaagctacg taaacggaaa tagtattgaa tcaatttttg aaattccatt
     2641 tacaaatatc aaacaaaatc cattttacgc aatgttgggt cctactgtaa acagactgaa
     2701 accaaaactg gatgtaatag atggtactat ttttccaccg gctctttatc agattgtaag
     2761 cgatgccagc gacattcgtg gatccggttg ttcctatcgt gccggagttg tatggaaata
     2821 cgtaggtaca agccggactg gagctgtaag agcttccacc gaatatacag caccctggat
     2881 tgtttataaa tactcggatg tattgttgat gaaagccgaa gcgttgaacc aaatgggatt
     2941 gcaaactcat gatgaaagtg ctcagaatta ttacaaacaa gcagttgaat ggatgagtat
     3001 tgtcagaaat gcccgtaatg cagttggtac gtccgaatat aaatttacag gtgatattga
     3061 tggtaagata ttagaaaatg caatcctttc tgagcgtgcc cgcgaatttg cattcgaagg
     3121 taaacgttgg tacgatgtgc ttcgttatgc caaacgtgga aattacgaag gaacaaacat
     3181 tcaatatctg ttgaatatgg ctattaacag tgcttcgcca cagaaacaac aaagcttgat
     3241 tgcaaaatac aaagacccta aacacaacag tcattattgg cctatttaca gttccgagct
     3301 ggaagctaat aaaaatttaa aacaaaatga gttttacgct caataaaaat atatcagcca
     3361 tgaaaacaaa aaatatcaat ttacaagcta aaattggact aattctaatg tttggtgcta
     3421 caatggctat ttttagctct tgtgtagatt atatgcaggg aaaaacattc cttacttcgg
     3481 acgagcgaat gattgatgaa tatatcgaac aaaaggacac aagcatgtca gaattcctgc
     3541 acattgccga tgttgccggc ttcaggggaa tgttacatgc atatggaaca aatacttgtt
     3601 ttattccaag caatgaggct attgctgtat attgccaacg acatggtatt gattcaatgg
     3661 aaactctgcc tgtagaggaa cttgaaaaat tcataaaatt ccatattgtt cgcgatacca
     3721 tccggacagc acaatttatc gatggccgtt tagacagagc taccatgttg ggaaaattcc
     3781 tgacaacaaa aacggttcag aatggggatg aagcacccgt tatacgtgtc aaccgccagg
     3841 caaatatcct gaaaagagac atttcggttg caaatggaat cattcataaa attgattatg
     3901 tattgacacc aaaccctaaa acagtaggtg aaatgattga acaactgccg gagaattact
     3961 cactctttaa gtcgataatg gaagaatccg gtttaattga cacgttgaca aataatattg
     4021 ccgccggtgt ttggtataca gcaattcttc aaagcaatga atctttttcc acacagggaa
     4081 ttacgactcg ctcggatttg attgagaaga tgaaggttgc ccaacccgat tttgcaaatg
     4141 atgaaacaaa acttctcaac atgtttgccc agtatcattg cattaaccgc ctggcttatg
     4201 ttgctgactt gtctattaca agcgctgaac tgactcttgc aaccaaccag gttattacat
     4261 ttaaaaccaa taaagactct ttaatactaa acgaattcaa aacattgaca aaattcgaaa
     4321 aaggggtaac tgtaaataaa tcatctgatt ggacggatat gagttgcagt aatggagtaa
     4381 tgattgattt ggatggttat attcagccgg taaaacgcgg tgctgaagct atctactggg
     4441 aacttaccga tcaaccggaa ataaaaaaac tgaaagaata cagaaagaga ggttcatttg
     4501 taactttcaa accgggagaa ctttctgaat taagttttgg tggaaaaaac aacccgacaa
     4561 ttacttacaa cgtatcatct tcctatgttg ctcaaggcgg acaatatgtt cattacgact
     4621 acttcgaaat tccgatgcgc cctaccctgc tgcaatggat ggagataaaa actcctgttc
     4681 tgaccgaagg cgtttacaat gtatggattt gctggcgtcg tggtggtgac aacaataagt
     4741 ttaaaaccac tttcaaacaa gaaggaaaag aagatcaggt attaccaaac gtattcgact
     4801 taggggagta tttcaataca agcaatacac cggaagtaaa tttgaacaat ggtatgaaac
     4861 agtataatgc aaaagcaaaa aacagcgtag tttgtagccg taattgtggg gccataaaag
     4921 tagaatatac aggtcggcat accatacgca ttgatgcatt gagcggtaat agccagccag
     4981 cctggtggga tatgatccag tttataccgg tagatcagaa tcaactctgg ccacgattcg
     5041 atgtggaagg aaatgcaata tatccaatgg aaaatgacag tttaaaactg aactgtgcta
     5101 aaatagcgcc atatgatcaa ccttgttcag gtgatttatc aaattaatag caaaatctat
     5161 atcattatga aatataaaaa tatcacaaaa tgcttgttca tggttccact tttagccatt
     5221 gggctgctaa tgaccggatg ttatgaaaat gcatgggaag atcacgttgc aaaagatcag
     5281 ttattgaaaa ataatctggt agaagctatt ggtacaaaag ctgaattatc caccttttta
     5341 tccatgttga aaaaaacagg ttatgataaa gtgctcgaat cagcaaatag tttaactgta
     5401 tttgctcctg ccaattcggc ctggacaggc atagatacca ctaatgtgga tcaaatgcga
     5461 aaagttgtcg gagcattaat cgtttacaaa tcatatttta cagacaacag caaaatattc
     5521 ggtacactta aatcggtaaa tggcaagaat atttcctacg acagcgaaac acaaacattt
     5581 aatggagcaa aaataattaa tcctgatatt cgcacagcga atggagtaat tcatattacc
     5641 gataaaattg ttgaacggaa agacaacatc tgggaattcc tatcagggaa aacagataat
     5701 tcgcaataca tcttcattaa cagcctgaac aaaaaggtta tggacccgga taaaagtatt
     5761 gctgttagag ttggtacaga tgggaaaacc atatatgata cagtatggat gaatatcaat
     5821 aactttctga agaaatatcc aattgacaac gaagattcaa catacaccta tattgttgtt
     5881 gaaaacgaag ggtttaacat gctttacaac aagtataaaa attatttcaa aatggccact
     5941 gagtttcaaa ccgactcaac aacacgcttt aatgtatgcc aggatatggt tttcaaaggt
     6001 gtagtggata ttacccagtt tgatactctg acaaatgttg atggggttaa agtaccggtt
     6061 aatggcgtaa caatcaaaga aacctacaat tcgtcaaatg gccgggttta tgtgattaat
     6121 caaacaaata tccgtctgaa ggacaaaatt aaacctataa agatagaagg tgaagcttat
     6181 tccagtgctt cggatgcaaa ttatgtattt acccgttaca aactctgggc aagcggcgag
     6241 cgtgacattg ctatggcagg tggcgaaacg caaacggaca ccatataccg cagattaaca
     6301 ggagtacggg atagtattgt gtcaaaaacg tactttgtca acagtaattt agttgcgaac
     6361 atcaacaact tttccattgc gtacaaagca aacgtgaatt caacaaatta cgatatttac
     6421 tatgttgcct atgatgatat tgcagatcac ttcgacccta cttataccaa ctttggcgtt
     6481 tacaaaattg ttcagaaact tttcatatct atgccaggtg gcaatccgct taaatatgga
     6541 ataacagaca atgcccgtgg agtcgccaat aattatttag gagaagcccg ttgtttcgtt
     6601 ggtcagggca tggctggcgt tcacgagata acaaaactca aacaatggaa tttagtagct
     6661 acaactcaac ttttggatat tccggttaca actgcaaatg cagatgtaat gactgttccg
     6721 aaaacaggta cgcttacaat gtggttatgc aatactgctc gtagtaatac agcgagccgc
     6781 catggattga tattcctcga ttacatattg ttagtcccaa gaattgttga agaatagtaa
     6841 ctttaattgc gaaaaaacat gaaacaactt aaatatattt tatcgacaat tttatttgtg
     6901 attgggttca acctttcact ttcagcccaa aagggcatta ttgctactaa tatatcagga
     6961 acggtatatg aatcggctac aggaaaaccc ttatccggag caaaagtatc tatacccgat
     7021 gtaacatcga cgacgacagg agagaatgga cagttcaaac taagtaaaac cattaaaggt
     7081 gcttatctgg ttgtttatgc acccggatat gccccaaagc gcattccggt tctaaatgcc
     7141 gaaaacatta aagtctggtt gctggacgat tcatacaaag gaaaatatga agacatagcc
     7201 acacctttcg aaatgataaa tgcagctaat agtaccaatg caatatcaac tcacgaaaac
     7261 agggatgatt ataagctggg ggctacaacg gttgagcaag tattacaggg aagtgtaaac
     7321 ggacttaata cggtttcgaa aacaggtgct ccgggtgcag gttcaaacat gtacctgaat
     7381 ggtttcaatt ctttgaatgc caatgctcaa ccgcttgtaa ttgtagatgg aataccatac
     7441 gaaaaccaaa caatttattc tttaattacg ggaaacaacg tttcggcatt atcggatatt
     7501 gatgtaaaag atattgataa cattaccgta ttgaaatcgg gagcttccat ttatggttca
     7561 aaagcctcaa acggagcaat aataatcaac acattatcgg caaaagatgc tgctacgcgt
     7621 atcaattttt atgcttattc cggagttaac ctggaaccaa acacccagta caagatgatg
     7681 gatggatggt cgtataaaaa ttacctgaca gatatgttgt caaactacgg tctttctgca
     7741 aatgccattc agtcctatcc ttttatcaat tctgaaaaac cgatggttga aaactggggt
     7801 atttccggca ataaggatta ttatcggtac aatcagtcga ccaactggca acaagaagtg
     7861 ttcaacagtt ctatcaatca aaattaccat ttgaatgtaa ccggtggaaa tgatgccgct
     7921 ttatatgcca tttcttttgg ttatctgggt cagggaggtt ctgttgataa aacttcattt
     7981 tcccgttata caacccgtgt aaatgctaaa atcaaaatga ccgactggtt taaacttaac
     8041 gccaacatga gttttgttta ttccgaaagg aatctggctt acgaagggtt gaaccgcaat
     8101 tttaacccgg tatatgcagg tttggtaaaa gctccttttg aatctcctta tgtgtataat
     8161 gtagctggcg aaaaaacacc gaatcttgaa gaagcagata tttttggtgt gtcaaatcca
     8221 agagcaatca tagataacag cttaacagaa agcaacagat tccgtttctt tggaaacctg
     8281 aacgggatta ttagcttctc aaaatatctg gatgcaagcg ttttggttgg tttaactact
     8341 gacaaagcgt ctgaaaatgt atttatgccg caggcaggaa tttatcatac cgcattgcca
     8401 acttcatatg taacaaacga gtctcaacaa ttgaggaatc atttattaca gataaacgcc
     8461 gatgcccact taacttacaa acggactttc aattatatcc atgatttaag tgtgcactta
     8521 ggaacccgct atcaatccag cagttccgaa cttgattggg gaaaagccta taatacatca
     8581 agcgatgaaa tgaaaacatt gggagatggt acaagcatcc tggcacaaat gggcggctcg
     8641 ttgggtaact ggaacacaat ttcaaactac ctgaatgttg attatggata ccaaaaccgc
     8701 tactttgtat cgttcaacgg tgcattggat ggtagttcac gctttggcaa ggatgcagtt
     8761 gacggtattt cagcttttgg aaacaaattc ggacttttcc cttctgtgaa tgctgcatgg
     8821 ttggttactg ccgaagactt catgaaaaac caacaggtat ttgatgtatt gaaactaaga
     8881 gcaggttatt ctgttaccgg aaacgatgac ataggtaatt attcggctcg tagttattat
     8941 actgcgcaag gatttatggg agcctacgga ttggtacgcg gaaatattcc aaacactaaa
     9001 cttcaatggg aaacaaacag aaaagaagtt tttggagttg atgcttcctt cctgaaagaa
     9061 cgcttgaatg caagtattga cttattcatt gggcaaaccg ataatctgat tggcataaaa
     9121 aagatcagta cattatccgg aattggcatg gccatatata acgatggtaa acttcaaaac
     9181 agcggcatcg atgtaaatat caatggtcga atccttgact caaaaaactt taaatgggac
     9241 atgggcctga acatttccaa atacaaaaac atgttactgg ctatgtcgga agacgaaaca
     9301 ttcaaccaga ttgccggtgc tactatccgc acaaaaattg gagctcctat cggacaattt
     9361 tacggatacc agaccaacgg ggttttcagt acgcaagctg aagcaacggc tgcaggtctg
     9421 aaaattcaca acaccgatgg aactgaaatg ccatttactg caggtgacat gaaatttgta
     9481 gaccgggatg gcaatcatat tattaatgaa gctgacatga cggtaatcgg agatccgaat
     9541 ccggattttg ttggttcgtt taccaaccgt ttacaatgga aaagattcac attgaatgcc
     9601 ttgtttggtt tctccgttgg aaatagtgtg tataatgctt taagagctaa tctggaatcg
     9661 ctgtcgaacc tggacaacca gactattgcg gccatttatc gctggcgagt tgacggtcag
     9721 gtaaccaata ctccgaaagc cgtttggggt gaccctatgc ataattcacg cttctccgac
     9781 cgttggattg aagatggctc atacgttcgg ttgaaaagta ttacacttgc ttatgattta
     9841 cctttaaaaa ctggttttat aaacagtgct cagatttatg taaccggcaa taatttgttg
     9901 acatttacaa aatacttagg ttacgaccct gaattcagta ctggtgtaag cccattatat
     9961 tatggaatag acagcggcgt tagtgcccaa ccacgtacca ttttagttgg tattaaagta
    10021 ggattgtaaa actgataatt ataaaaaact aatcgtatga aacgagtacc gttctatcgg
    10081 gacaagttcc atacgacaac taaaaaaaaa ttattatcgt atgaaattat ataaaatagc
    10141 aacaggttta gctttatatg ctcttttatc cgtgagtctt acttcgtgtc aggatttatt
    10201 ggaaactaat gcaaaagaag tagtggaaga atctgaaaac tttcacaatg tctatgatgc
    10261 cgataacgcc atatggggat tgtatggaaa agtatctaac ctggctgaaa atgtagtagt
    10321 actcaatgag ctacgtgccg atttgatgga cgtaacatca aatgctactg ttgatcaggt
    10381 aaatctgaac aatcacagcg aagatgcaac taacaagtat tgcaatccgg caccttttta
    10441 tgaagtgatt ttgaatgcaa atgatattct tcacaatttc gacaaaatgc tggctgagaa
    10501 taaaatctcg aaagaaaatt acgatccgag atattcggat gtaatggcta ttcgtagctg
    10561 ggcatattta cagttgggaa ttcagtttaa agacgttatt tatgtcactg atcctttgca
    10621 atcggttgaa tcattaaacg attcaaccaa tttccctaaa aaatcattgg acgaattaat
    10681 tccccaactg atcagcgata tggaaagtgt tccaacaaaa gagacaaaca cactttcatc
    10741 ctattatgga aaaacgatta ctgataacag taaatctttt tacctgaatt tgcaattcat
    10801 tgacaagcat attttgttag gcgacctgta cttgtggaac gatcagtatg ttgatgctgc
    10861 aacccagtac aaagcatata tggatgccgc cgatctgagt tcttcgaaaa caaatataaa
    10921 aaataaaata agcacctggg tttggaatgg ctctaatgag ccccgtttcc aaattactta
    10981 tcaacgtttc aaagaccagg atgttacttc attccgtaac atgtggaaag aaattttcta
    11041 tcgcggttct accgatgccg gaacttccgg cactatcggg ctgcaggatg agatgatttg
    11101 gatgataagt ttcagtggtt cttcaacatc tgtcagccca ttcgttaaac tctttgcaaa
    11161 caccggagtt ggtgaatatc agttgaaacc atcggcctac gctatcgata gtttgtggga
    11221 aacacaagtt cagcaatcta acggattcgt ttttgatgga cgtggaagag aatcttcatt
    11281 cgactatgta aatgggcaac ccgtagtttt gaaatatctg tatgattatt atgcctctgt
    11341 aacgacagat gcaaataaaa ccattcattt aaattatgat tttaatcgat attcaaaacc
    11401 tggaaaatgg ttcttatacc gggctgcact cttgcacctt cgttatgccg aagctgccaa
    11461 ccgcgccggt tatccgcgcc tggcctatgc attgctgaat aacggtatta aaacaaatta
    11521 cgactggaga aaaagtgatg gaactttccg tgccgataaa gcgggtgtac aatataccag
    11581 tttcccgcca accagcgata ctgagcctgc cagaccctac cctgccccat tctatctgga
    11641 tgcgcgccaa aacgatgctc catatgcttt cctgcgttcg ccatggagag ataatggagg
    11701 aatcagagga agagcatttt taaacaatat acctacccct gattatgttc acgatggaat
    11761 tggcgatgat cataacgatt ctatccaatg gattgaaaaa gcactgatac aggaagccgc
    11821 gttggaatgt ggattagagg gacaacgttg gggagatttg cttcgggttg ctcgccgcaa
    11881 cagcaaagat ggaaaaggaa cagtttccgt attaatgaac gacgcagtag ctcacaaatt
    11941 cagggctgcc ggaaaaggtg ctgctactat caccgaaagc aacctgtttt tacctatgaa
    12001 gaaatagaaa acgcaggtat atacttaaca aaagagagga tgtcccaata gatgtcctct
    12061 cttttgcttt tcaacgaccg gacttgtcat ctcaatgagt ggaaaagtca tctcaacgac
    12121 cggatttgtc aactaaatga gtggagaagt catctcaatg aacggatttg tcatctcaat
    12181 gaatggaaaa gccatctcaa taaccggatt tatcaactaa atgtgtagag aagccatctc
    12241 aaagaccgga tttgtcatct caatgagtgg agaagtcatc tcaatgaccg gatttaccaa
    12301 ctaaatgagt ggagaagcca tctcaatgac cggatttatt atctcaatga atggagaaac
    12361 catctcaatg tccggattta tcaactaaat gtgtggaaaa gtcatctcaa tgaccggatt
    12421 tatcatctaa attgccgtcc catttatggg gcggataaaa tcattaaaac ttacagggct
    12481 ttagccgaat ttaaaatgct atttggctaa agccaatatg ttttctacct atccacccac
    12541 cccataaatg gggcggcaat tgatactaag aataccacat tatattgttc cccttacttc
    12601 tataatacca agatattata tcgaactcac gttaaattac aaattcctag ctataaaagc
    12661 tctgaaaagg gttacggccc aatatttaaa ttttttgtaa aaaaagtttc atttgactct
    12721 tgctaattca aataataatt ttacatttgc aagccgtttc acttaaaaaa cgaacggata
    12781 atatgaacca taaaatcaat atctaatgac aaattatcag aatgcattat tagcaagcta
    12841 cgacaaaatc ctgattgaat gcgacaaagc gcccgaagca gtggcaaaga tttcactctt
    12901 cagtaaaaaa atggcacgtg tgcgcgttat cgtcgcagaa atcaaagggc tgtcgccaca
    12961 acaggaagag attaccacgg gtatcactac cgaaaaaaat atcctgctcg aagaagtcac
    13021 cgacct
//
LOCUS       DATDNM010000367         3006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1754560, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000367 DATDNM010000000
VERSION     DATDNM010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1754560"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            446..520
                     /locus_tag="VI413_06120"
     tRNA            446..520
                     /locus_tag="VI413_06120"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:481..483,aa:Val,seq:tac)
     gene            555..629
                     /locus_tag="VI413_06125"
     tRNA            555..629
                     /locus_tag="VI413_06125"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:590..592,aa:Val,seq:tac)
     gene            845..2158
                     /gene="der"
                     /locus_tag="VI413_06130"
     CDS             845..2158
                     /gene="der"
                     /locus_tag="VI413_06130"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008661792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEY6914236.1"
                     /translation="MGNIVAIVGRPNVGKSTMFNRLTKSRRAIVNDEAGTTRDRQYGK
                     SEWEGREFSVIDTGGWVVNSSDIFEDEITRHVLLAIEESDVILFMVDIQNGITDYDLE
                     VAQILRGHTKPVVLASNKADTFDWQFHAAEFYKLGLGEPLIVSAINGLGTGDLLDRLL
                     THFHPDASDEMEDELPRFAVVGRPNAGKSSIINAFIGEDRTIVTDIAGTTRDSIYTRF
                     NKFGHDFYLVDTAGIRKKAKVNEDLEYYSVVRSIRAIENCDVCILMIDATRGIESQDL
                     NIFSLIQKNRKGFVVCVNKWDLIENKETNDIKHYEKTIRERLAPFVDFPIIFTSATTK
                     QRILKVLETAVQVYENKQRKVATAKLNEYMLPAIENYPPPALKGKFIKIKYVTQLPNT
                     QIPTFLFFANLPQYVKDPYRRFLENKIRAKYDFTGTPIQIFIRQK"
     gene            complement(2235..>3006)
                     /locus_tag="VI413_06135"
     CDS             complement(2235..>3006)
                     /locus_tag="VI413_06135"
                     /inference="COORDINATES: protein motif:HMM:NF025458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4270 family protein"
                     /protein_id="HEY6914237.1"
                     /translation="VYVTTNYGASTILNIGKKMMYIDYYYHYTYKKPGDTTLTTVNNV
                     LTFPANDEVRQVNRFVHSDRATLVKQRDSVNYVASPANLQTRIYLPLGRMKDSISAKI
                     ASGKKKILNNAILKVEATEVGDSTFEMPIVQYMLLIKESAVKRFFEDGLIPTSKDTTA
                     LLGQISASQIGTTGKYEYSYSFDIAALIGNELKNGVAGDEVVPMVLIPVNVTQSSTSS
                     GATTITAVKQQYMMSGVTIRSGQNQKHPMRLNLVYSGF"
BASE COUNT          970 a          618 c          535 g          883 t
ORIGIN      
        1 taaagccaac catacagcgt tgacgcaaaa tcgaaaagtg atcaagctat tactgtcttt
       61 tttgaaaaca ggaaccttca aaccataaaa actacgatag tgcaatgtgc aatcctaatt
      121 agagaaacaa aaaaaaagag aactaaaaaa gcaggaaaac tatacactag ttccggattt
      181 aatagcttta caaacacaaa agcatctctt atttgttaaa cttggcaatg ttttacaact
      241 acaaaactgt aaaaaagcgc tttttattgc tcttcatgga agttcatacg ttttttttca
      301 aaattttcaa ttctgttttc taagcacttg cgtccaaaat tcaacacatt cataaaaaaa
      361 cagagaatat gtttttgaaa tttcaaaaaa ggatgtatct ttgcaacgct tttggagaaa
      421 ggcatttcaa tccgaattca aattcgggcg tttagctcag ctggttcaga gcatctgcct
      481 tacaagcaga gggtcggcgg ttcgaatccg tcaacgccca cctttaattg aaaaatcgac
      541 aaaacacaca tttcgggcgt ttagctcagc tggttcagag catctgcctt acaagcagag
      601 ggtcggcggt tcgaatccgt caacgcccac tttaaaacga aggtcaaaca ttaatttgtt
      661 tgaccttttt ttattttctt tcggtacgta tatggacaca gtaaattcat tgattttccg
      721 cttccaagaa aaaaccgtac ctttgcaccc aaaatatttg cacccgctgt gtggatttga
      781 gaaaacctgc acagataaca aacaaatgga atgtaaatat ctaacttttt agatataaaa
      841 aacaatggga aatattgtag caattgtagg tcgccccaac gtagggaaat cgaccatgtt
      901 taacaggctc accaaaagtc gtagagccat agtaaatgat gaagcaggca ccacccgcga
      961 ccgccaatat ggcaaaagcg aatgggaagg ccgcgaattt tcagtaattg acaccggagg
     1021 ttgggtagtc aactcatcgg atatttttga ggatgagatc acaagacacg tccttttagc
     1081 cattgaggaa tcagatgtaa tactgtttat ggtggacatt caaaacggga tcaccgatta
     1141 cgacctggaa gtagcgcaaa ttttgcgtgg acacacaaaa ccggttgtat tggcttcaaa
     1201 caaagccgac acttttgact ggcaatttca tgctgccgag ttttacaaac taggattagg
     1261 cgaacccctt attgtttcag ccatcaatgg tcttggaacg ggcgatttac tggacagact
     1321 ccttacacat ttccacccgg atgcttccga cgaaatggaa gatgaacttc ctcgctttgc
     1381 ggttgttggc cgtccaaatg caggaaaatc atcaatcatc aatgccttta tcggtgaaga
     1441 tcgcacgatt gtaactgaca ttgcaggaac tacccgtgac tcaatttaca ctcgcttcaa
     1501 taaattcgga cacgattttt atctggttga cactgccgga atacgaaaaa aagccaaagt
     1561 aaacgaagac ctggagtact attcagttgt ccgatctata cgtgccattg aaaattgcga
     1621 tgtatgtatt ttaatgatag atgctacgcg tggaatcgaa agtcaggatt tgaatatatt
     1681 ctccctgatt cagaaaaaca gaaaaggctt tgtagtttgt gtcaacaaat gggacttgat
     1741 tgaaaacaaa gagacaaatg atattaaaca ttacgaaaaa acaattcgtg aacgtctggc
     1801 tccatttgtg gatttcccta ttatctttac ttcggctaca accaagcaac gtattttgaa
     1861 ggttttggaa actgctgtac aggtttacga aaacaagcag cgtaaggtcg caaccgctaa
     1921 gttgaacgag tatatgcttc cggccataga gaactatcca ccaccggctt taaaaggcaa
     1981 atttatcaag attaaatacg ttactcaatt gccaaatacg caaattccaa cgtttttgtt
     2041 ttttgccaat ttgccacaat acgtaaaaga tccatatcgc cgttttttgg agaataaaat
     2101 ccgggccaaa tatgacttta ccggaacacc aatacaaatc tttatccgcc aaaaataatc
     2161 tcaattatat ctgaaataaa aaatgcagta gaacttaatt ccactgcatt tttttatgct
     2221 tatcaaacta cattttagaa gccgctatac accaaattaa gtctcatcgg atgcttttgg
     2281 ttttggccgc tccttatagt cacaccactc atcatatact gttgcttaac cgcagtaata
     2341 gttgttgcac cactcgaggt actggattga gtaacattaa caggtattag aaccattggc
     2401 acaacttcat caccagccac accatttttc aattcattac caataagtgc agcgatatca
     2461 aaactataag aatattcgta tttgcctgtt gtacctattt gcgaagcgct gatttgaccc
     2521 aacaaagcag ttgtatcttt acttgttgga attaaaccat cttcaaaaaa acgtttcact
     2581 gccgattctt taatcaatag catatattgt acaattggca tttcaaaggt tgaatctcct
     2641 acttcggtgg cttctacttt taaaattgca ttattcaaaa ttttcttttt ccctgacgct
     2701 attttagcac taattgaatc cttcattctt cccaacggaa gatatattct tgtttgaaga
     2761 tttgccggag aagccacata attcacacta tccctttgct ttaccaatgt agccctatct
     2821 gaatgaacaa aacggtttac ttgcctaacc tcatcattcg ccggaaatgt taaaacattg
     2881 ttaactgttg taagagtagt gtcacccggc tttttatatg tataatgata atagtagtct
     2941 atatacatca tcttctttcc aatattcaga attgtagagg caccataatt ggttgtaaca
     3001 taaact
//
LOCUS       DATDNM010000368         2566 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_580611, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000368 DATDNM010000000
VERSION     DATDNM010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2566
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580611"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..804)
                     /locus_tag="VI413_06140"
     CDS             complement(<1..804)
                     /locus_tag="VI413_06140"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914238.1"
                     /translation="MNRNFLFLAFLFSISALCVSAATSPSDGQGIAYYRAGFPVVAKP
                     LLISEIETNSSNRAETCFNLGNIYFSDNQLDSAAFYFNKGLVADPMNSLNSIGLTMLK
                     IKSNVETAEAEYKNVLKLKQNKKNVDIYIAIANAYLFNGVLDKAVFYQEKAKSIKTKY
                     APVYVVLGDIELAKKNIGEACRNYEQAIYFDDKCKEAYIKYARAYKSVNTPLAIEKLE
                     ALKAKEPSFLLVDRELADIYYSTNNFSKAAELYANYLQSGNSNVMDLTKY"
     gene            complement(832..1773)
                     /locus_tag="VI413_06145"
     CDS             complement(832..1773)
                     /locus_tag="VI413_06145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6914239.1"
                     /translation="MYKFRILLVLFVITLVSCQTKSNDKFTDTYSSGVIPMAVDVSFQ
                     PIIKEEIDVFEAQFPKADIVPTYTNEVTAIDMLMKDSVRVAIATRPLSDNEVNYLKNK
                     KFSPRSYKLAIDGVALIVNNQNPDTLISVVDLRRILTGKVKNWNEIYPNSKLGKFRVV
                     FDNPNSSTVRYAIDSICIGDPISKELNAQQTNEEVINYVSKTPNAIGVVGVNWLNNAK
                     DTTNLSFNNNVRVMSVSSQEKAEPENSYKPFQAYLFYENYPLSRTIYIILNDPRGSLP
                     SGITNFMTSDRGQRIILKAGLVPATQPIRVVNIKDEQ"
     gene            complement(1779..>2566)
                     /locus_tag="VI413_06150"
     CDS             complement(1779..>2566)
                     /locus_tag="VI413_06150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005792001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEY6914240.1"
                     /translation="FEWRELVFQGKNKEYGAYALRSDSNKRHNKAMLIITIVAVVLFS
                     IPALIGFIKKNQEVKVEYGPTVMTKLPPAKVNDEHIKKVESVEPPPALKSSVKFTAPV
                     IKKDEEVNENDEMKSQEELTNTKGIMSIADVVGNDDVNGKDIADVKADVTQIEEEKVY
                     DVIEQMPQFPGGESELLTYISKNLKYPVIAQENGIQGTVIVRFVVSKTGAVDKVEVLR
                     SLDPACDREAVRVVRTLPNWIPGKQNGVNVSVYYTLPIKYKLE"
BASE COUNT          787 a          496 c          392 g          891 t
ORIGIN      
        1 atatttagtt aaatccatta catttgagtt tcctgattgt aaataatttg catatagttc
       61 tgctgctttg ctaaagttat ttgttgaata gtatatatca gccaattcac ggtcaactaa
      121 caagaatgaa ggttctttag ctttaagtgc ctctaatttc tcaattgcca gcggagtatt
      181 aacactttta tatgcacgag catatttaat gtaagcttct ttacatttat catcaaaata
      241 aattgcctgc tcataattcc tacaagcttc acctatattc ttctttgcca actcaatatc
      301 acccaagaca acgtacaccg gtgcatattt agtttttata cttttagcct tttcctgata
      361 aaaaacagct ttgtctaaaa cgccattaaa taaatatgca ttagcaatag caatataaat
      421 atctacattc tttttgtttt gcttgagttt aagaacattc ttatattcag cttcagcagt
      481 ctctacgttt gatttgattt tcagcatagt caaacctata gaattcagag aattcattgg
      541 atcagccacc agtcctttat taaaataaaa tgcagcggaa tctaactggt tgtctgaaaa
      601 ataaatgttt cctaaattga aacaagtttc agctctgttg gaggaattgg tttcaatttc
      661 agaaatcaac aagggtttgg ccacaacagg aaaacctgca cgataataag caataccctg
      721 tccatccgat ggagatgttg ctgcactaac acaaagcgcg cttatagaaa aaagaaacgc
      781 taaaaataaa aagttacgat tcattgtagc ttggttatat agttaaattt attattgttc
      841 atcttttata ttcacaaccc tgataggctg tgttgcagga actaaaccgg ctttgaggat
      901 aattcgttga cctctgtctg atgtcatgaa attcgtaatt cctgatggca atgatcctcg
      961 cggatcattc aaaattatat atatagttct tgataaaggg taattttcat aaaacaaata
     1021 agcctgaaat ggtttatagc tattttccgg ttctgccttc tcctgactac tcaccgacat
     1081 taccctaaca ttattgttaa atgataaatt tgttgtatct ttcgcattgt tgagccaatt
     1141 aactcctaca actccaatag cattaggtgt ttttgataca taatttataa cctcctcatt
     1201 tgtctgttgt gcatttaatt ctttggatat tgggtcacca atacaaatag aatcaattgc
     1261 ataacgtaca gtacttgaat ttgggttatc aaatacaact ctaaattttc ctaattttga
     1321 atttggataa atttcattcc aatttttcac ctttccggta agtatccttc tcaaatcgac
     1381 aacacttatt aaggtgtcag gattttgatt gttcacaatc aatgcaacac catcaatagc
     1441 aagtttatac gaacgcggtg aaaacttctt gtttttcaag taatttactt cgttatctga
     1501 taatggtcga gttgcaattg caacacggac actgtctttc atcaacatat caattgcagt
     1561 aacctcattt gtataagtag gtacaatatc tgctttagga aattgagctt caaaaacatc
     1621 aatttcttct ttgataatag gctgaaaact gacatctact gccataggaa taacacctga
     1681 agagtaggta tcagtaaatt tgtcattact ctttgtctga caagagacaa gagtaatgac
     1741 aaataatact aaaagaattc tgaatttata catacgcact attccagttt gtatttaatt
     1801 ggcaatgtat agtaaactga tacatttaca ccgttttgtt ttcccggaat ccagttagga
     1861 agtgttctaa ccactctgac agcttctctg tcacaagcag gatctaatga tctcaacact
     1921 tcaactttat caaccgcacc tgtttttgat acaacaaaac gtacaataac cgtaccctga
     1981 ataccatttt cctgtgcaat aaccgggtat ttaagattct tggaaatgta agtcaaaagt
     2041 tcactttctc caccaggaaa ttgtggcatt tgttcaatta catcatatac cttttcttct
     2101 tcaatctggg ttacatcagc ttttacatca gcaatatctt taccattgac atcatcatta
     2161 ccaacaacgt cggcaataga cataatacct ttagtattgg taagttcttc ctgactcttc
     2221 atttcgtcgt tttcatttac ttcttcgtct tttttgatga ccggagctgt aaacttcacc
     2281 gaagatttca atgcaggagg cggttctacc gattctactt tttttatgtg ctcatcattc
     2341 acctttgcag gtggtaactt tgtcatcact gtaggaccat attccacttt tacttcctgg
     2401 ttttttttaa tgaaaccaat aagtgctgga atgctgaaaa gaactacagc cacaatggtg
     2461 ataatcagca tagctttgtt gtgacgttta tttgagtcac tacgcaatgc ataagcacca
     2521 tactctttgt ttttgccttg aaatacgagt tctcgccatt cgaagg
//
LOCUS       DATDNM010000369         5953 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_686878, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000369 DATDNM010000000
VERSION     DATDNM010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5953
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_686878"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VI413_06155"
     CDS             <1..286
                     /locus_tag="VI413_06155"
                     /inference="COORDINATES: protein motif:HMM:NF036499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914241.1"
                     /translation="LYLLPTHALDGGKNQRIAVSIDGSEPTVFNINTIGRSSTWKENV
                     LRNQAVVKFPFRFKTLGRHTLRIYAVDPDIVVDQLMIDFKLNRNFYGAGK"
     gene            complement(334..729)
                     /gene="ssrA"
                     /locus_tag="VI413_06160"
     tmRNA           complement(334..729)
                     /gene="ssrA"
                     /locus_tag="VI413_06160"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            1156..3459
                     /locus_tag="VI413_06165"
     CDS             1156..3459
                     /locus_tag="VI413_06165"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914242.1"
                     /translation="MKTHIYKPIFVIILIFCGFLYVNGQPGDWQNELFTVYPTNPTSS
                     DSVVLSYKYISNDGCPDYYFTKDSVAGNSIFINLNRINDQDRICIQVISTFIAAINLG
                     TFNESKQLYINGKYWRTINVGCQMDKKGVVVSCGGIMFIQDISSPLAVIQLYKIKAEV
                     DATTGVAANPVLHVGDKVYFGGYRVLNPPLPSDSCSYIGVATCYKLIDTPTVCVPDRK
                     GVVVNCNGQLFVEDLSVPYASVFPYLYRLQNAPNGINSPVLKAGDKVMFKAVSDSADS
                     ISAGVCRTFGYVLCYKVIEPTPGCVLDKKGIVVTGVPDCNTVLLIKEILTGNLYSINP
                     SVATNATLNAEPVLKPGDRVIFGGYLIKNDSVKSSDCLVNGIAECYRLIDTVPICVKD
                     REGIVERGAGTCANLLFVRETATSMLFYINPQEVFNSAGLTTIDLNVGDKVKFNGVLI
                     YTLAGFANFCNASGIVKCYELIERADTYTLSGIALAGTDTVKSGLVVLFGKGYRKALG
                     IGKISEGSFTFKGLPQSDYTVYFIPDKSLYKGYLPTFYIDKLYYRFADFVNLQSNVND
                     VVVKMRKFVPHIEGTCRIYGNVFFEANRLNDTLMVKNALLDTYGSPDYAIAVNATVLL
                     LNRYNEPVAWTLTDVNGNYMFDKLPVDSFTVVSETASAFADLPVGLTNENTETNADMM
                     LKEVAGVTGDNNPVSSDMIIYPNPVRESFTVLLNENIQVKIYNIAGQLVFVRNLFVGE
                     NKVEISQLKPGIYIIHAGSRTYKLLKN"
     gene            complement(3595..4461)
                     /locus_tag="VI413_06170"
     CDS             complement(3595..4461)
                     /locus_tag="VI413_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEY6914243.1"
                     /translation="MQNTTLKLTDQLPLTCSRSGNCCHGNKVLLNPWELACLASEKKI
                     SAHEFRDLYTEWSGVRLRFNGAVGYVGKQACSQFIAGAGCSIHVARPLACRLFPLGRQ
                     IQNGETTYMHPGKAFPCLDGCAEVLNLPFCSVEEYLAGQKTASWEIAQKAYLEVVQLL
                     ADVAFELLLDSGLAESGDKETLRQWRLMANESPEQLAERIGQSWLDQLTIPDVNPDIE
                     QPQLFCEQHVTIIQEQLQASFGNVQTLEEIQKASVLVMALALFLSVAVGANPLLLANH
                     WIEIAKNNRAQE"
     gene            complement(4576..>5953)
                     /gene="rny"
                     /locus_tag="VI413_06175"
     CDS             complement(4576..>5953)
                     /gene="rny"
                     /locus_tag="VI413_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005848820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEY6914244.1"
                     /translation="KEKFIALKAEHEQQVQERNAKVQEKEVKLQQREMQLNQKQSEVQ
                     RKINEVEILKDNHEQQIHALEGKKKELDHLQHQAQMELETISGLSAEQAKERLVEALK
                     EEAKTNAMSYINDIMEEAKMTANKEAKKIVVQSIQRVATETAIENSVTVFHIESDEIK
                     GRIIGREGRNIRALEAATGVEIIVDDTPEAIVLSAFDPVRREIARLSLHQLVTDGRIH
                     PARIEEVVNKVRKQVEEEIIEIGKRTTIDLGIHGLHPELIRMVGKMKYRSSYGQNLLQ
                     HSREVANLCATMASELGLNPKKAKRAGLLHDIGKVPDDEPELPHAILGMRLAEKYKEK
                     PDICNAIGAHHDEVEMESLIAPIVQVCDAISGARPGARREIVEAYIKRLNDLENLALS
                     YPGVLKTYAIQAGRELRVIVGADKIDDKETELLSFDIAKKIQDEMTYPGQVKITVIRE
                     TRAVSYAK"
BASE COUNT         1578 a         1188 c         1303 g         1884 t
ORIGIN      
        1 tttgtatttg cttccaactc atgcacttga tggaggcaaa aatcagcgta ttgcagtttc
       61 aattgatgga agtgagccaa ctgttttcaa tataaataca attggcagga gcagtacgtg
      121 gaaagagaat gtgctcagga atcaggctgt tgtgaagttt ccttttagat tcaaaacttt
      181 gggacggcac acgctgcgga tttatgccgt tgatccggat atagttgttg atcagctcat
      241 gattgacttt aaactgaacc ggaattttta tggagctgga aagtaaacac aaaaaaggca
      301 tatcagattt tgatatgcct tttttgtgtt taagagtgga gctggaggga gtcgaaccct
      361 cgtccaaaca aggaaataat aagctttcta catgtttatc ttcgcttagg ttttcgtgcg
      421 tgggcaagac caaagccacc aacccgcgcc ttatcctttt tatttcatcg tgcctccaag
      481 gctaagcacg actatcttcg atttatccgc atctcctgat cattggcctc gaagcgacgg
      541 ccgccgggaa atgtctcgtt ctggtacctt gtacctgaat taagcttatc tactatgatt
      601 cgattaagca gcaagagcgt agttattttc gccagttata attttgagac cctggattaa
      661 cgagctgttt tctcaaagct cgacatgctt acatatcagt tctacctgct gtcaaaacca
      721 aacagcccct tgtcgtgaaa ttgccaatga ttcattgaat ttcgttagtt tcaccgctgt
      781 ggacttgtga aatgtcaatt atctgacaga atctgttgtt ccacaaattg ggtctgcaaa
      841 gataatgcga tatttctgaa tatcaaaaat cgtgcaatta attattgttt atatgatttt
      901 atcgctgact gtgcatatag atcccgaagg gttaaaacca tctaaattta tacaacatta
      961 caggaataat atgcatctga ttgttatata cttgaaggtt catccgcctt ggcggtccat
     1021 ttttcgatac ctatgttttc tctttattgg tataaaaaac agattatgaa acgagcatga
     1081 ttgcagatga ttagcaaatg gaatgaaaat ctgacatgcg agttccatgt gattattaaa
     1141 aacaattatt tgcagatgaa aacacatatt tacaagccaa tttttgtaat cattttgatt
     1201 ttttgcggat ttttgtacgt caacggtcaa cccggcgatt ggcaaaatga gttatttaca
     1261 gtttatccga caaatcccac ttcttctgat agtgttgttt tgtcgtataa atacatatca
     1321 aacgatggtt gcccggatta ttacttcacc aaagattccg ttgcaggcaa cagtatattt
     1381 ataaatctta atagaattaa tgaccaggac cggatttgta tccaggtgat ttcaactttc
     1441 attgctgcaa ttaatctggg aacatttaat gaaagcaagc agttgtatat caacggaaaa
     1501 tactggcgca caataaatgt aggatgccag atggataaaa agggggtcgt agtaagttgt
     1561 ggaggcataa tgtttattca ggatatttct tcccctcttg cggtaattca gttgtataaa
     1621 ataaaagccg aagtggatgc aactaccgga gtagctgcaa accctgtcct gcatgtggga
     1681 gataaggtgt atttcggtgg atacagggtg ctgaatcctc ctcttccgtc agattcatgc
     1741 agctatatag gagttgcaac ctgttataag ttaattgata cacccacggt ttgtgttcct
     1801 gaccgtaaag gagtagtggt aaattgcaat ggacaattat ttgtggaaga tctttcggtt
     1861 ccttacgcat cggtgtttcc ttacttgtac aggcttcaga atgcgcctaa cggaatcaat
     1921 tcccctgttt taaaagcagg cgataaggta atgtttaaag ctgtttccga tagtgccgat
     1981 tctatatcgg cgggtgtttg ccggactttt ggatatgtgc tttgctacaa ggtgattgag
     2041 ccaactcccg gatgtgtatt ggataaaaaa ggaattgtag tgactggtgt gcctgattgc
     2101 aacactgtat tactaattaa ggagatattg acaggaaatc tatattcaat caatcccagc
     2161 gttgctacta atgccacatt aaatgccgaa cctgttctga agcccggcga tagggtgatt
     2221 tttggcggct atctgattaa gaatgattct gtgaagagtt cggattgttt ggttaatggt
     2281 atagctgaat gttaccggtt gatcgatact gttcctatat gtgtgaaaga tcgagaaggc
     2341 attgttgaga gaggagcggg tacttgtgct aatttattgt ttgtaagaga aacagccaca
     2401 agcatgttgt tctacataaa tccccaggaa gtctttaatt ctgcaggatt gacgacaatt
     2461 gacctgaatg tgggtgataa agtgaaattc aatggagttt taatctatac attggccgga
     2521 tttgcgaatt tctgcaacgc ttccggcatt gtgaaatgtt atgaattgat tgaaagagct
     2581 gatacgtata ctctgtcagg catcgcgtta gccggaacag ataccgttaa gtccggattg
     2641 gttgttttat tcgggaaagg ctatcgcaaa gctcttggaa taggaaaaat atcagaggga
     2701 tcattcacgt tcaaagggtt gccacagtca gattatacag tgtattttat ccctgataaa
     2761 tcgctgtata agggatatct gcccactttc tatattgata agttgtatta caggtttgcc
     2821 gattttgtga atctgcaatc caatgttaat gatgttgtgg taaaaatgcg aaaatttgtt
     2881 ccgcatatcg aaggtacatg tcgtatctat ggaaatgttt tctttgaagc caaccggttg
     2941 aatgacactc tgatggtgaa aaatgcattg ttggatactt atggctcgcc cgattacgct
     3001 attgccgtta acgccaccgt tttactgctg aataggtata atgaaccggt agcatggaca
     3061 ttgaccgacg tgaatggaaa ttatatgttt gataaacttc ctgtcgattc gtttaccgtt
     3121 gtttctgaaa cagccagtgc ttttgcagat ttacccgtag gacttacgaa tgagaacaca
     3181 gaaaccaatg ctgatatgat gttaaaagaa gtggcgggtg ttacagggga caataatcct
     3241 gtaagttcag atatgatcat ttatccgaat ccggtgcgcg aaagttttac agtgctgctg
     3301 aatgaaaaca tacaagttaa aatttataac attgccgggc aattggtatt tgtccggaac
     3361 ttgtttgtcg gcgagaacaa ggttgaaata agccagttaa agccgggaat ttatatcatt
     3421 catgcaggaa gcaggacgta taaacttttg aagaactaac gtgatttaaa gtataattat
     3481 agaggggctg tataatttgt tttatacagc tcctttcatt tctcgactaa ttgcattagt
     3541 tgttcttgtg agccaatcag ctaattagta atcgtctaat catctgattt ttcattactc
     3601 ctgtgctcta ttgtttttgg caatttctat ccagtgattt gccagcaata aggggtttgc
     3661 accaacagct acagataaga ataaagccag tgccataacc aatactgaag ctttctgaat
     3721 ttcttccagg gtttgaacat tgccaaatga agcttgcaat tgctcctgaa tgattgtgac
     3781 atgttgctcg caaaacagct gtggttgctc aatgtcaggg ttcacatccg ggatagtcaa
     3841 ctgatcgagc cagctctgac caattctttc tgccaactgt tccggcgatt cgttggccat
     3901 aagccgccat tgccgtaaag tttctttatc gcctgattcg gccaggccgc tatccaatag
     3961 caattcaaag gcgacatcgg ccaatagttg cactacttct aaatatgctt tttgagctat
     4021 ttcccaacta gccgtttttt gtcctgccag atattcttct acgctacaaa agggtaaatt
     4081 cagaacttcg gcacaaccat ctaaacacgg gaatgctttg cccggatgca tgtaagtggt
     4141 ttcgccattc tgaatttgac gtccgagcgg gaagagccgg caggcaagtg gccgggcaac
     4201 atgaatactg cagccagctc cagctataaa ctggctgcag gcttgttttc caacatatcc
     4261 aacagcaccg ttgaatcgta gacgcacacc actccattct gtgtacaagt ctctgaattc
     4321 gtgggcgctt atcttcttct cgctcgccag acaggctaat tcccatgggt taagtaatac
     4381 cttgttgcca tggcagcagt ttccggaacg ggagcaggtc agtggtaatt ggtcggttag
     4441 tttaagtgtg gtgttctgca tttatttttg agtaatgttg aaaacttgta tctcaaataa
     4501 aaaaccgaca aacagtaaga taccatttat cggtttttaa tattatctca attgacagta
     4561 tagtcaatta ggtccttatt ttgcgtagct tactgcacgg gtttcacgga ttaccgtgat
     4621 ttttacctgt cccggataag tcatttcgtc ctggattttc ttggcgatat caaacgacag
     4681 taattcagtt tctttgtcat caatcttgtc tgcacccaca attacgcgca actcacggcc
     4741 agcctgaata gcataggttt tcaatacgcc agggtatgaa agtgccagat tttccagatc
     4801 gttcaaccgt tttatataag cttccacgat ttcgcggcgt gctcccggac gtgcaccgga
     4861 gatagcatcg caaacctgga cgataggagc tataaggctt tccatttcca cttcgtcgtg
     4921 gtgagcgcca atagcgttgc aaatgtccgg tttttctttg tatttctcgg ccaaacgcat
     4981 accaaggatt gcatgtggca attccggctc atcatcaggc accttgccta tatcgtgcag
     5041 cagtccggca cgttttgctt ttttaggatt cagtccaagt tccgaagcca tggttgcaca
     5101 aaggttcgct acttcacgcg agtgttgcaa caggttttgg ccgtacgacg aacggtattt
     5161 cattttaccc accatgcgga tcagttcagg gtgcaatccg tgaattccaa ggtcgatagt
     5221 ggtgcgttta ccaatttcaa taatttcttc ttccacttgc ttgcggactt tgtttaccac
     5281 ttcctcgatg cgagcggggt ggatacgtcc atcggtaacc agctggtgaa gcgaaaggcg
     5341 tgcaatctca cgacgaacag ggtcgaaagc tgaaagaaca attgcttcgg gggtgtcgtc
     5401 cacaatgatt tcaacgccgg tggcagcttc aagtgcgcgg atattacgtc cttcgcgacc
     5461 gataatgcga cctttgattt cgtccgattc aatatgaaat acagttaccg aattttcaat
     5521 ggctgtttcg gtagctacac gttgaatgct ctgaaccacg attttcttag cctctttgtt
     5581 ggcagtcatt ttagcttctt ccataatgtc gttgatgtac gacatggcat tggttttagc
     5641 ttcttctttc aatgcttcca ccaatcgttc tttggcttgt tcagccgaaa gtcccgaaat
     5701 ggtttcaagc tccatttgtg cctgatgttg aaggtgatcc aattcttttt tctttccttc
     5761 aagcgcgtga atttgttgtt cgtgattatc tttcagtatt tcaacttcgt tgattttacg
     5821 ctgaacctcg ctttgttttt ggttcaactg catttcgcgc tgttgaagtt ttacttcctt
     5881 ttcctgcact ttagcattac gttcctgcac ttgctgttcg tgctcagctt tcagggctat
     5941 gaatttttct ttt
//
LOCUS       DATDNM010000370         3645 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1435612, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000370 DATDNM010000000
VERSION     DATDNM010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3645
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1435612"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..1283)
                     /locus_tag="VI413_06180"
     CDS             complement(72..1283)
                     /locus_tag="VI413_06180"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyloxyacyl hydrolase"
                     /protein_id="HEY6914245.1"
                     /translation="MKTNFLKISLILILVINSFSTFGQDSRAQLPLALRNAYTEVNIG
                     YINYPFGSTQFATNVLGYNFQSVEVPHAAVRLVLYGYEFNKYLSAQLSYMRPVIWVHY
                     FYDKNSVNYKSSVWMNIGGLTLKPQLPIGKRFSIYGEAGWGIITRHGFNDPQFHKPLV
                     TSANYSTILLGAGLKYHVNNHWAWQLSTTYSPEKKSVDQPATTFLSAGFQYKLLKVSK
                     EKLEKAASTGYIHPANLLQIGYSSNLLGYGVNNALEKACLFWGGDAEVRQGISINYQR
                     NIFHSAKYFSLNLGVSAGLWQTNINKQNFYALSIYPLFRYDFLHTKPVDAYFYYSVAG
                     PSYISDIILDGKDTGKHFTFQDTMGAGIFFGEKRIYNAELKIGHYSNGNIFPRNGAVK
                     IPLSLNVGYTF"
     gene            complement(1507..2139)
                     /locus_tag="VI413_06185"
     CDS             complement(1507..2139)
                     /locus_tag="VI413_06185"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018108487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEY6914246.1"
                     /translation="MSVLVGKKAPVFNSKAVVNGGEIIENFSLQQYVGEKYVVFFFYP
                     ADFTFVCPTELIAFEEKAAEFASRNTVIIGASTDSEFSHWKWLQTPQNQGGIQGVKYP
                     LVVDQSLNISKDYDVLIGADEYDEEGNVVLVGEPKAYRGLFLIDKQGVVRHQLVNDLP
                     LGRNVDEVLRLIDALQFTEEYGEVCPANWKKGEKALIATQEGIASYLSAK"
     gene            complement(2271..2750)
                     /gene="ispF"
                     /locus_tag="VI413_06190"
     CDS             complement(2271..2750)
                     /gene="ispF"
                     /locus_tag="VI413_06190"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009231428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HEY6914247.1"
                     /translation="MNIRVGFGYDVHVFAPERELWLGGIRLDHSPGLLGHSDADVLIH
                     ALCDALLGAANLRDIGFHFPDTSKDYKNIDSKILLSKTIQLLRSKGYEFGNVDCTVCA
                     EEPKLNPHIPAMQACLAGVMDVSGDSISIKATTSEKMGFVGRKEGIAVYATVLIYKI"
     gene            complement(2860..>3645)
                     /gene="porV"
                     /locus_tag="VI413_06195"
     CDS             complement(2860..>3645)
                     /gene="porV"
                     /locus_tag="VI413_06195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IX secretion system outer membrane channel
                     protein PorV"
                     /protein_id="HEY6914248.1"
                     /translation="YFSLGDISLFDEYGVIAGAAHPNEFALDGAYSRLFSEKFSGAVA
                     LRFIYSDLGNGIGSEEIYPGWTVAADVSAYYKTPISLQNTDGNLGLGLNISNIGGKIS
                     YDDFLNSNFIPTNLRLGGSFDYPIDTYNKISFSADVNKLLVPTQNNMTAAEYTNLSPI
                     TGIFKSFSDAPGGLKEELSEIMWSVGAEYAYNNQFFVRGGYYNESQFKGNRKYFTAGA
                     GFKLNVFQLDAGYVISTSQSNPLDQTLRFSLSFDLYGLKNLVK"
BASE COUNT         1184 a          671 c          615 g         1175 t
ORIGIN      
        1 aaaggttttt acgagcatag tttttagatt tatatgtcaa ttgggattaa ttattttttc
       61 tcagttactg tttaaaacgt gtaaccaacg tttagagata aaggtatttt aacggcacca
      121 tttctaggga aaatatttcc gtttgaataa tgtccaattt ttaattcggc attatagatc
      181 cttttttctc caaagaaaat accggctccc atagtgtctt gaaatgtgaa atgttttcca
      241 gtgtcttttc catccaatat aatatcagaa atgtaggaag gaccggcaac agaataataa
      301 aaatatgcat caacaggttt tgtatgtaaa aagtcatacc taaacagcgg ataaattgac
      361 aatgcataga aattttgctt atttatgttt gtttgccaca aacctgcact gacacctaaa
      421 tttaatgaaa agtacttagc gctatggaaa atgttacgtt ggtaattaat cgaaatcccc
      481 tgacgtactt ctgcatctcc tccccaaaat aaacaggctt tttcaagtgc attattaact
      541 ccgtaaccga gcaagttact tgagtaacct atttgaagaa gatttgcagg atgaatatag
      601 ccagtactag ctgctttttc cagtttttct tttgatactt tcagtagttt gtactgaaat
      661 cctgctgata aaaatgtagt tgcgggttgg tcgactgatt tcttttccgg tgaataagtc
      721 gtgctcaatt gccatgccca atgattgttt acatggtatt ttaaacctgc tccgagtaaa
      781 attgtagagt aatttgcact tgtaacaagc ggtttgtgga attgtggatc attaaaacca
      841 tgtcttgtga taattcccca gccagcttcg ccatagatag aaaatctttt tccgattggt
      901 agttgtggtt tcaaagtcag ccctccaata ttcatccata cagaagattt ataattgaca
      961 gaattcttat catagaaata atgaacccaa atcacgggtc tcatatacga taattgagcc
     1021 gagagatact tgttaaactc atatccataa agtacgaggc gcacagccgc gtgtggcacc
     1081 tctacacttt gaaagttgta gccaagcaca tttgtcgcaa attgggttga gccgaatgga
     1141 taattgatat agccaatgtt cacttcagta taggcatttc tcaatgccaa aggtaattga
     1201 gctctggaat cctgaccaaa tgttgagaat gaattaataa ctaaaatgag aattagactg
     1261 atttttaaaa agttggtttt cattaagcgt gatgatttaa atatattcga aaatagattg
     1321 taattaatat aagatgtctt tatgcctgtc tcaaggtttt aatgcttaca aaaatagtta
     1381 aatattttaa tttatttact tttatactaa aagaaatata taaattgtgt tagattctac
     1441 gttcacataa caagaagcgc cgtaacataa ctgttacagc gctttgtttt gatgaatttt
     1501 ctaaaattat tttgcagaaa gataacttgc aattccttcc tgagttgcaa ttaatgcttt
     1561 ttctcccttt ttccagtttg caggacaaac ttcgccatat tcttctgtaa attgtagtgc
     1621 atcaattaat cggagtacct cgtcaacatt acgtccaagt ggaaggtcat ttactaattg
     1681 atgacgtaca acaccttgct tgtcaatcaa gaaaagtcct cgatatgctt ttggttcacc
     1741 taccaatacc acgttacctt cttcatcgta ttcgtctgca ccaatcaata cgtcgtaatc
     1801 tttagatata ttcaacgatt ggtcaacaac tagtggatat tttacacctt gaataccacc
     1861 ttgattttgt ggagtttgaa gccatttcca atgtgaaaat tcagaatcgg ttgaagcacc
     1921 gataattact gtgttgcgag atgcaaactc agctgctttt tcttcgaatg caattaattc
     1981 agttgggcat acaaaagtaa aatctgcagg ataaaagaaa aatacaacat atttttcacc
     2041 tacatactgt tgcaatgaga aattttcgat aatttcacca ccatttacta cggctttact
     2101 attaaaaacc ggtgcttttt ttcctactaa tactgacatg tttttatatt tttaattggt
     2161 tgttgtttta acactacaaa aatatacaga agtgaggaga atctatcata aaatccgata
     2221 gagttttttt atactaatat aggaaaaaca aatcaaaggg caacaagttc tcatatttta
     2281 taaattaaca ccgtggcgta cacggcaata ccttcttttc tgccaacaaa gcccattttt
     2341 tctgaggtag tagctttgat agatattgaa tctcccgaca catccattac tcccgcaaga
     2401 catgcctgca tggctggaat gtgcgggttc agtttgggct cttcggcaca aactgtgcaa
     2461 tcaacgttgc caaattcata ccctttggaa cgtagtagtt gtattgtttt tgacaagagt
     2521 attttgctgt caatgttttt atagtctttg gacgtgtcag gaaaatgaaa tccgatatca
     2581 cgtaaatttg cagctcctaa taaagcgtcg cataaagcat gaattaaaac atcagcatct
     2641 gaatggccta ataatcctgg agagtggtca agtctgatgc ctcccaacca cagttcacgt
     2701 tcaggtgcaa aaacatgtac gtcataacca aatccaaccc gtatgttcat aatatatgtt
     2761 tcttttttaa ataaaaacgg ttgaaccaac ctgtaggaag agaacaaccg tttctgaaat
     2821 atttgataaa aattttaagc tatctaagta taaaaaatgc tatttaacca gatttttcaa
     2881 tccatacaag tcaaaagaga gagaaaaacg caaggtttga tcaagtggat ttgattgaga
     2941 agttgaaatt acataacctg catccagctg gaatacgttt aatttaaacc ctgcaccagc
     3001 agtgaaatat ttacggtttc ctttaaactg gctttcgtta taataaccac cacgaacaaa
     3061 aaactgattg ttgtaagcat attcagcacc gaccgaccac attatttcac tcaattcttc
     3121 ttttaaacca ccgggagcat ctgagaatga tttaaaaatt ccggtaattg gcgacaaatt
     3181 agtatattcc gctgcagtca tgttattttg cgtaggaacc aatagcttgt tcacatctgc
     3241 gctgaaagaa attttattat aagtgtcaat tggatagtca aatgatccac ctaatctcaa
     3301 attcgtcgga ataaaattac tgtttaaaaa atcgtcgtat gaaattttac caccgatatt
     3361 tgatatgttc aaacctaatc ctaaatttcc atctgtgttt tgtaatgaaa taggggtttt
     3421 gtaatatgcc gaaacatcag cggcaacagt ccaacccgga tatatttctt cacttccaat
     3481 accatttccc aaatctgaat aaataaaacg gagcgctaca gcacctgaaa atttttcaga
     3541 aaatagacgg gaataagctc catcaagagc aaattcgttt ggatgggccg caccagcaat
     3601 tacaccatac tcatcaaata agctaatatc tccaagggaa aaata
//
LOCUS       DATDNM010000371         3889 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_154589, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000371 DATDNM010000000
VERSION     DATDNM010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3889
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154589"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            25..348
                     /locus_tag="VI413_06200"
     CDS             25..348
                     /locus_tag="VI413_06200"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: protein motif:HMM:NF013939.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046417 - chorismate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEY6914249.1"
                     /translation="MELTLSKLPTDCNSKEDIREQIDIIDKEIIALFAKRFEYVSEIV
                     KFKTDAESVVAQDRKNHVIKARGEWAEKHGLDKATFEQIYRFLVDHNIGKELEILEKQ
                     RTTPL"
     gene            425..1375
                     /locus_tag="VI413_06205"
     CDS             425..1375
                     /locus_tag="VI413_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase catalytic domain-containing protein"
                     /protein_id="HEY6914250.1"
                     /translation="MYKQEIKVMDCTVRDGGLMNKWQFSDEFVRGVYNACVEAGIDYM
                     EIGYLSSEKAFDRSVYGPWKFSHQKDLERIVGKNETNLKLSAMADIGRIDLDDIPMAS
                     DSLLDMIRVACYVHQVDKAIALAHHCMDKGYEVCINLMAVSTVGELELDEALKDIAKS
                     RVKTFYAVDSFGSMYVESIQHLVRKYMAALPGKEIGIHAHNNMQMAMSNTYTAIMEGC
                     TMLDATLMGLGRGAGNCPIEILIAFLKNPKYRLLPLLQVIQDYVLPMQSQIDWGYHIP
                     YLISGALNAHPRRSLEWMDSERKNDFVTFMKEMHDNEILE"
     gene            1694..3658
                     /gene="gyrB"
                     /locus_tag="VI413_06210"
     CDS             1694..3658
                     /gene="gyrB"
                     /locus_tag="VI413_06210"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018964978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009330 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) complex [Evidence
                     IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEY6914251.1"
                     /translation="MSEVEKARETASANYGASSIQVLEGLEAVRKRPAMYIGDIGVKG
                     LHHLVYEVVDNSIDEALAGHCDTIQVFINEDNSITVIDNGRCIPVDHHEKEGKSALEV
                     VMTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSTYVRVEVSRNGKLYMQEYSCGIPK
                     FPVQEIGTSTTNGTKTTFLPDNSIFIESVYKYDILANRLRELAFLNAGITLTLTDKRF
                     TNEDGTNKSEVFHSKEGLKEFVEYIDEAREKLIDNVIHISTEKNGTPVEIAMTYNTSY
                     NENIHSYVNNINTIEGGTHLAGFRRGLTRTLKKYAEDSKMLEKLKIEISGDDFREGLT
                     AVISIKVQEPQFEGQTKTKLGNNEVMGSVDMAIGEALGNYLEENPKAARTIVEKVILA
                     ATARHAARKAREMVQRKSPLSGGGLPGKLADCADKDPEKCELFLVEGDSAGGTAKQGR
                     SRQFQAILPLRGKILNVEKAMQHKVLESEEIRNIYTALGVTIGTEDDSKALNIKKLRY
                     HKIIIMTDADVDGSHIATLIMTFFFRHMKELIEQGYLYIATPPLYLCKKGKVEEYCWT
                     DLQRQAFIEKYGGGVEGAVHTQRYKGLGEMNEIQLWDTTMNPENRTLRQVTIDNAATA
                     DHVFSMLMGDDVAPRRAFIEQNATYAKIDA"
     gene            3745..>3889
                     /locus_tag="VI413_06215"
     CDS             3745..>3889
                     /locus_tag="VI413_06215"
                     /inference="COORDINATES: protein motif:HMM:NF037785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEY6914252.1"
                     /translation="MNIAVFCSSSNHIAEHYKQAAFHLGEMIAESGNTLVYGGATGGL
                     MDSV"
BASE COUNT         1304 a          727 c          824 g         1034 t
ORIGIN      
        1 attttataaa gcaaacgcaa aaccatggaa cttacattat ctaaattacc aaccgactgc
       61 aatagcaagg aagatattcg ggaacaaatt gacattatcg acaaagaaat aattgcttta
      121 tttgctaaaa ggtttgaata cgtaagcgaa attgtaaaat tcaaaacaga tgccgaaagt
      181 gttgttgccc aggatcgtaa aaatcatgta atcaaagctc ggggcgaatg ggctgaaaaa
      241 cacggtttgg acaaagcaac ctttgaacag atttacaggt ttttagtcga tcataatatc
      301 ggcaaagagt tggaaatcct cgaaaaacaa agaaccactc ctctatgaaa cccacgcaaa
      361 aaaaaacaat aataacataa aaaagacggt tgactgaagt ccgtcaaccg tcgccttaaa
      421 agaaatgtac aaacaagaaa ttaaagtaat ggattgcacc gttcgcgacg gtggattgat
      481 gaacaaatgg caattttcgg acgagttcgt tcgcggagtt tacaatgctt gtgtcgaagc
      541 tggcatcgac tacatggaaa tcggttacct gagcagcgaa aaagcatttg accgcagcgt
      601 ttatggcccc tggaaattca gtcatcaaaa agacctcgaa cgaatcgtgg gtaaaaacga
      661 aaccaacctg aaactgtcag ctatggcaga tataggccgt atcgatttgg acgatatacc
      721 aatggcttct gatagcttat tggatatgat tcgcgtagct tgttatgtgc accaggttga
      781 caaagccatt gcactggctc atcattgcat ggacaaagga tacgaagttt gtatcaactt
      841 aatggcagta tcaactgttg gcgaactgga attggatgaa gctttgaaag atattgcaaa
      901 atcgcgcgta aaaacttttt atgcagtaga tagttttggt agcatgtatg tagaatccat
      961 tcaacatctg gttcgcaaat atatggcagc tttgcccgga aaagaaatcg gaatccatgc
     1021 ccacaacaac atgcaaatgg ccatgtcaaa cacatacacc gccattatgg aaggatgcac
     1081 catgctcgat gccacattaa tgggccttgg acgtggagcc ggaaattgcc cgattgaaat
     1141 tctgattgca ttcctgaaaa accctaaata tcgtctactg cctttattgc aggttattca
     1201 ggattacgtg cttcctatgc aatcgcaaat cgactggggt taccatattc cgtatctgat
     1261 ttcaggagct ttgaatgccc accctcgccg gagtttagaa tggatggatt cagaacgcaa
     1321 aaacgatttc gtaactttca tgaaagaaat gcacgacaac gagatattgg aatagcattt
     1381 ttctaaatgt aaaaaaatag ccactcacat caatgggtgg ctatttttat gcaaattttg
     1441 gacattactt tcaaaaaatg aaccataaaa ccagcatatc ggaaagtata ataaatgttt
     1501 aaatttcatt taattatcat agaaaatcaa tgagatagtc ccctatttta atttctaaaa
     1561 atccgtaaca gcgtggtgtt tatctcgaaa atttattgta tatttgtctg tttttcgaaa
     1621 tagtatgctt caatgtaagt aacaacaaaa aactatcttc aaacaactgt aacaaaataa
     1681 cttaaaatag aaaatgagcg aagtagaaaa agcaagagag actgcaagtg ccaattatgg
     1741 cgcaagtagc attcaagtgc tggaaggttt ggaagcagtg cgtaagcgtc ctgcgatgta
     1801 tattggcgac attggcgtaa aaggtctgca ccatttggtc tatgaggtag tcgataactc
     1861 aattgacgaa gcgctggccg gacattgcga taccattcag gttttcatta acgaagataa
     1921 ctcaataaca gttattgaca acggacgctg tattccggtt gatcatcacg aaaaagaagg
     1981 taaatctgct ttggaagtag ttatgaccgt acttcatgcc ggtggtaaat tcgacaaaga
     2041 cagctacaaa gtttccggcg gtttgcacgg tgtgggtgtt tcatgtgtga atgctctttc
     2101 tacatatgtt cgtgtagaag tttccagaaa tggaaaacta tacatgcagg aatattcgtg
     2161 cggaattcca aaattccccg tccaggaaat aggaacatca actacaaatg gtactaaaac
     2221 aacatttctc cccgataatt ccatttttat cgaatcagtt tataaatacg atattttagc
     2281 taaccgtctc cgcgaattag catttttgaa tgcaggtatc acactgactc ttactgataa
     2341 acgattcacc aacgaggatg gaaccaataa atcagaagtt tttcattcaa aagaaggatt
     2401 gaaagaattt gttgaataca ttgacgaagc ccgcgaaaaa ctaattgaca atgtaattca
     2461 catttctacc gaaaagaatg gaactccggt agaaattgcc atgacttaca atacatctta
     2521 taacgagaac atccattcat acgtgaataa tatcaacacc attgaaggtg gaactcactt
     2581 ggcgggtttc cgtcgtgggt tgacacgtac gttgaagaaa tatgctgaag acagtaaaat
     2641 gcttgaaaaa cttaaaattg aaatcagtgg tgatgacttt cgcgaaggat tgactgccgt
     2701 tatttcaatt aaagttcagg aaccacaatt cgaaggccaa accaaaacca agctgggaaa
     2761 caacgaagta atgggttcgg tagatatggc tattggcgaa gctttgggaa actacctgga
     2821 agaaaatcct aaagctgccc gcactattgt tgagaaagtt attttggctg caactgcacg
     2881 tcatgcagct cgtaaagcac gtgaaatggt acaacgcaaa tctccgcttt cgggtggtgg
     2941 attacctggt aaattggcag actgtgctga caaagaccct gaaaaatgcg aattattcct
     3001 tgtcgaaggg gactcggcag gtggaacggc caaacaaggt cgtagccgtc agttccaggc
     3061 aattttgcca ttgcgtggta aaattctgaa tgtagaaaaa gccatgcaac ataaagtgct
     3121 tgaaagtgaa gaaatacgca atatatacac cgctttgggc gttactattg gaacggagga
     3181 tgacagcaag gcattgaaca taaaaaaact tcgataccat aaaatcataa tcatgaccga
     3241 tgccgatgtg gacggaagcc acattgccac actgattatg acattctttt tccgtcacat
     3301 gaaagagttg atcgagcagg gatatttata cattgctact cctccactct atttgtgtaa
     3361 aaaagggaaa gtggaagaat attgctggac tgatttgcaa cgccaggcat ttattgaaaa
     3421 atatggtggt ggcgtagaag gtgcagttca tactcaacgg tataaaggtt tgggagagat
     3481 gaacgaaatt caattgtggg acacaaccat gaatcctgaa aaccgcacat tgcgtcaggt
     3541 cacaattgat aatgcagcta ctgccgatca cgtattctca atgttgatgg gcgatgatgt
     3601 tgcaccacgt cgtgcattta ttgaacaaaa cgcaacttac gcgaagattg acgcttaact
     3661 cagtgattag tgataaatgt ttagtgatta gtgtccaatt ctaacaacta aacatttatc
     3721 gcttaacatt aatcacttat taaaatgaat atagccgttt tctgctcctc aagtaatcac
     3781 attgccgaac attataaaca agctgcattt cacttgggcg aaatgattgc cgaaagtgga
     3841 aatacacttg tgtatggcgg tgcaacagga ggtttaatgg attctgtag
//
LOCUS       DATDNM010000372         2056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1008473, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000372 DATDNM010000000
VERSION     DATDNM010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1008473"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..312)
                     /locus_tag="VI413_06220"
     CDS             complement(<1..312)
                     /locus_tag="VI413_06220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009317110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914253.1"
                     /translation="MKLLKQINMKKITLRSSLPFMVLVAVAIAAVFVPTLPNFDNGKY
                     NTADMAWMLVATALVFLMTPGLAFFYGGMVHRKNILSTMMKSVVAAGVVGVLWVGVGY
                     SL"
     gene            complement(316..1377)
                     /locus_tag="VI413_06225"
     CDS             complement(316..1377)
                     /locus_tag="VI413_06225"
                     /inference="COORDINATES: protein motif:HMM:NF019268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEY6914254.1"
                     /translation="MLRKLLAPLFAMLVVTTSFAQDSSKTSALAITGSADVYYKYDFG
                     KSASNTYTSFTGSHNQFRLGMASVKLEHKTGKVDMVADLGFGKRAQEFSYNDQGILQA
                     VKQLYVSYSPNSIVKFTAGTWATHVGYELVDPQLNRNYSMSYMFTNGPFFHTGVKADF
                     TLGKSGVMVGVANPTDFKYVPDGVMNKKFFLAQYSYTGSEFFKVYLNYVGGKGIDTTK
                     TNQFDVVITSKLSDKFSLGYNGTVSTAEYWDGAKNLDGKSWWGSAVYLNLDPSSKFGL
                     TLRSEYFSDKNQLKIVTGTTNGAKIFANTLSANFKIDNLTIIPEFRIDNSSQEIFTKE
                     NGSATKTAANVLVAAVYSF"
     gene            complement(1773..1949)
                     /locus_tag="VI413_06230"
     CDS             complement(1773..1949)
                     /locus_tag="VI413_06230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914255.1"
                     /translation="MMWKGLPAIRGLREGVPGRTSPGGNGERACTSDAFTTPVICLYN
                     ACNSPESRKLTGLT"
BASE COUNT          580 a          461 c          406 g          609 t
ORIGIN      
        1 gaggctgtat cccactccga cccataatac cccaactaca ccagctgcaa cgacactttt
       61 catcatcgtg gaaaggatat tttttctgtg aaccattcca ccgtaaaaga acgctagtcc
      121 gggggtcatc aaaaagacca atgcggtcgc taccagcatc caggccatgt cggcagtatt
      181 gtatttgcca ttgtcaaaat tggggagagt aggaacaaaa acggccgcaa ttgcaacagc
      241 aacaagtacc atgaacggga gtgatgatct taatgtaatc ttcttcatat tgatttgctt
      301 taggagtttc aaaaattaga aagaataaac cgccgctacc aacacgttgg cagcagtctt
      361 tgtggccgaa ccattttcct tagtaaatat ttcctggctt gaattgtcga ttctgaattc
      421 cggtatgatg gttaggttgt cgattttaaa gtttgctgat aaagtgtttg cgaaaatttt
      481 ggcgccattc gtagtaccag taactatttt aagttggttc ttgtcactga agtattcgct
      541 tctcagcgtc agaccaaatt tggaggaagg atcaaggttc aggtaaacag cagaacccca
      601 ccaggatttt ccgtccaaat tcttcgcacc atcccaatat tctgcggtgc tgactgtgcc
      661 attataccca agagaaaact tatctgacaa cttactagtt attaccacat caaattgatt
      721 ggtcttcgtg gtatcgatac cttttccacc aacataattc aggtaaactt taaagaattc
      781 actgcctgta taactatatt gtgcgaggaa aaacttttta ttcatcacac cgtcgggaac
      841 gtatttaaaa tcagtcgggt ttgccactcc aaccattacc ccactcttgc ctaaagtaaa
      901 atcagccttg acaccagtat gaaagaaggg gccattggtg aacatgtagg acatgctgta
      961 atttctgttg agctgaggat cgaccaactc atatcccacg tgtgtagccc acgtcccggc
     1021 tgtgaatttc actatgctgt tgggtgaata gctaacatag agttgtttca ccgcttgcaa
     1081 tattccctgg tcgttgtacg aaaactcctg tgctcttttt ccaaaaccaa gatctgctac
     1141 catatccacc tttcctgttt tgtgctccag cttcacgcta gccattccaa gtcggaactg
     1201 gttatgagac ccggtaaagg aggtataggt gttggaagcg gatttcccga aatcatactt
     1261 ataataaaca tcagccgatc cggttatggc tagggcggag gtcttcgagg aatcctgtgc
     1321 aaacgatgtg gttactacta acatggcaaa aagaggtgcg agtaattttc gtaacattgt
     1381 gtcggttttt aagtttaaaa agaaaggtat tgcgcggact aagcttgttc cagaagccta
     1441 tttcgcaagc aatacctttt gtttatgtct gttttcgatt tccggttcgg aggaaatttc
     1501 accagggtta catttcaact ctccaactca atgcaagcct ttctgaatct aaaattagcg
     1561 acccacgcat tccaaaacaa atgtttttta ttttaatgtt tacttttgag gaaaaagtgg
     1621 tgataaaaca gcgatttgca cacgaatata gacacattta cgagaatttc tattcgtaac
     1681 agccgattta ccgccgcgtt ttagtattat tatttttatt tacaatttat tacccaatac
     1741 ttttaggatt cattcttcgc agtctatacc cgtcaggtca aaccagtcaa ttttcggctt
     1801 tcaggcgagt tacaggcatt atacaggcaa attacaggcg tcgtaaaggc atccgaagta
     1861 caggctcgtt caccgtttcc tcccggggaa gtcctgcccg ggacaccctc ccgtaggcca
     1921 cggatcgccg gcaaaccttt ccacatcatt ccaacatttt aaaattgaga agttttcaat
     1981 cgaaatttta cttattttca tagccgttcg cttgctaaaa cacgatagag tttatactaa
     2041 aaaaaacccc tgtcta
//
LOCUS       DATDNM010000373         5968 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1436687, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000373 DATDNM010000000
VERSION     DATDNM010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5968
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1436687"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..753
                     /locus_tag="VI413_06235"
     CDS             <1..753
                     /locus_tag="VI413_06235"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HEY6914256.1"
                     /translation="NFYPECKISTTTVLGEVEKVEFKVTGKQILDPGWRVVFAKVTTD
                     EKEGEEEEEWTLPIFEKGESGPHEPTLAEKWTSPPKPYTEATLLRAMETAGKLVDDDE
                     LRDALKENGIGRPSTRAAIIETLFKRDYIRREKKNLVATNTGVELIQMIQEDLLKSAE
                     LTGRWEKKLRQVEKGEYQAKDFLDELKTMVTEIVFNVKSDNRRPGEAALPAKPTLEGA
                     VCPLCSKGTLLKGKTAYGCSEWKSGCTYRLPF"
     gene            793..2148
                     /locus_tag="VI413_06240"
     CDS             793..2148
                     /locus_tag="VI413_06240"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated chloride channel family protein"
                     /protein_id="HEY6914257.1"
                     /translation="MIKKWIHTFDQYFILKYIVRWFLYVVPVSVVVGSMVALFLWLLD
                     VATTFRWNHSWLLYFLPVVGVAIVALYKFRGKNADAGNNLVMDEIHKPGGGIPFRMAP
                     FILITTVVTHLFGGSAGREGTAVQIGGSVAHFFGKKMRLSSDDLRILLMTGIAAGFGA
                     VFGTPVAGAVFALEVLAIGRIKYDALLPCFLAAVLANLVCSMYGIQHTHYHIDFHEQA
                     TSGFFNFNYKILLWVTVSAVLFGLTSNLFSELSHTVKNAVHKYIKWKYAIPVVGGVVI
                     IVLTYLLGTTDYLGLGVTTQNGQGSSLLNAFKPGGVDTFSWMWKVIFTVITLSTGFKG
                     GEVTPLFFIGATLGNVIATYTGMPVDLFAALGFIAVFAGATNTPLACTLMGVELFGGE
                     HVLYFALACFIAYYFSGHSGIYTSQRLGISKANLIENADTKTTLKNIRDNKKQNNQKT
                     D"
     gene            2249..3469
                     /locus_tag="VI413_06245"
     CDS             2249..3469
                     /locus_tag="VI413_06245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008666394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY6914258.1"
                     /translation="MTYQTYTLSNGIRIIHKQDISAVAYCGIVINTGSRDEAENEQGM
                     AHFIEHMLFKGTEKRRSGHIINRLEHVGGELNAYTSKEETVVYAGVLKEYFERAMELI
                     ADIVLHSNFPQKEIDKEVVIILDEIQSYNDSPSELIFDDFEEQLFDNHPIGHNILGKS
                     ELLEKYSTEDAFRFVKKHYRPEELVFFALGELDFKQLVRWAEKYLHTENDGSKVFERI
                     PPTSYKPIKKEINKNTHQVHFMMGNRAYDLFHPNRMGMYLLNNILGGPGMNSLLNLSL
                     REKHGLVYNVESSYQPFTDTGMWSVYFGCDPENVARCEQLIHTELQKLREQQLSENSL
                     KKYKLQLVGQMAIASENKENLALSLGKSFMRYGKIDDLETVKQLIEEVTAEKLQEIAN
                     EIFDIKQLSVLKYV"
     gene            3488..4114
                     /locus_tag="VI413_06250"
     CDS             3488..4114
                     /locus_tag="VI413_06250"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009122143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6914259.1"
                     /translation="MNLEEYIAKHSDAEPEYLAKLNRITHLKMLNPRMLSGHFQGRVM
                     ALFSHMIQPKRVLEIGTFTGYSALCMAEGMPEDGILHTIDCDDELESFLTETFAGSEH
                     GHKIKLHIGDALTEVAKLDEVFDLAFIDADKAEYEAYFEAVLPKIRVGGFILVDNTLW
                     DEKVLRPVEPKDKDAIAIIKFNEFIAADNRIEKVLLPIRDGLTLIRKK"
     gene            4216..4626
                     /locus_tag="VI413_06255"
     CDS             4216..4626
                     /locus_tag="VI413_06255"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEY6914260.1"
                     /translation="MYIYELELKVRDYECDIQGVVNNSVYQNYLEHTRHEFMEANDLS
                     FAELHDRGIDAMVSSIEIAYKTPLRPGDNFISKLYVTKEGVRYIFHQVIYRKSDNKLA
                     IKAKVHAVVVIDGKLASSLPEFDELVIRSQVKVE"
     gene            4822..5136
                     /locus_tag="VI413_06260"
     CDS             4822..5136
                     /locus_tag="VI413_06260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002558965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein"
                     /protein_id="HEY6914261.1"
                     /translation="MNEFLETEEKIVRMLKTVFDPEIPVNIYDLGLIYKIDLDDDGHL
                     TIDMTLTAPNCPAVDFIVEDVRMKVLSVEGITDVDVNIVFEPAWDKNMMSEEAQLELG
                     FL"
     gene            5313..>5968
                     /locus_tag="VI413_06265"
     CDS             5313..>5968
                     /locus_tag="VI413_06265"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008758 - UDP-2,3-diacylglucosamine
                     hydrolase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEY6914262.1"
                     /translation="MVYFLSDAHLGSLLVKDKRAHEKKLVDWLDSVKNDASVIYLVGD
                     IFDFWFEYKTVVPKGFVRFLGKVAELIDSGIEIHFFIGNHDIWTFGYLQDEVGLIIHK
                     EPFLVQHGSKKFYIAHGDGISANDHGFKLMRQIFHSNTAQKLFRLLPPQLGQGFGYNW
                     SKSNRLKHMDYDSKYLGENNEALVLFAKKHVQTHDDIDFMIFGHRHIALDLQIKNQKR
                     V"
BASE COUNT         1805 a         1034 c         1379 g         1750 t
ORIGIN      
        1 aatttttatc ctgaatgtaa aatttcgacc accacggtgt tgggcgaagt ggaaaaggtg
       61 gaatttaaag ttaccggaaa gcagatactt gatccgggat ggcgtgttgt ttttgccaaa
      121 gttaccaccg acgaaaaaga aggcgaagag gaagaagaat ggacattacc gatatttgaa
      181 aaaggtgaaa gcggtccgca cgaaccaacg ttggccgaaa aatggacttc gccaccaaaa
      241 ccttacacgg aagcaacttt gctgcgggcc atggaaaccg cgggtaaact ggtggatgat
      301 gacgaacttc gtgacgcatt gaaagaaaac ggaattggcc ggccgtccac acgcgcagcc
      361 attatcgaaa cgctttttaa acgcgattat atccgcaggg aaaagaaaaa tctggtggct
      421 acaaatactg gtgtggagtt gattcaaatg atccaggagg atttgctgaa atcggcagaa
      481 ctaaccggcc gttgggagaa aaagctccgg caggtggaaa aaggggagta tcaggccaag
      541 gattttctgg acgagcttaa aactatggtc accgaaattg tttttaatgt aaaaagcgac
      601 aaccgccgcc ccggagaagc cgctttgccg gcaaagccaa ctctcgaagg agccgtttgc
      661 ccgttgtgta gtaaaggtac tcttctgaaa ggaaaaaccg cttatggatg tagcgagtgg
      721 aaaagtggat gcacatacag gttgcctttt tgatagaacg agaataggat acttattata
      781 tgatatacaa gcatgatcaa aaaatggatt cacacatttg accaatactt tatcctgaag
      841 tacattgtca ggtggttttt gtatgtagtg ccggtatcgg tagttgtcgg atccatggtg
      901 gcattgttcc tgtggctgtt agatgttgca accacttttc gctggaatca cagttggtta
      961 ttgtacttcc tgccggtagt aggagttgcc attgttgcgc tttataaatt tagagggaag
     1021 aatgccgatg cgggaaataa tcttgtgatg gacgaaattc ataaaccggg tggcggaatt
     1081 ccgttcagaa tggctccatt tatacttatt acgactgttg ttacgcatct ttttggaggt
     1141 tcggcgggac gagaaggtac ggcagtgcaa ataggaggca gtgttgctca tttttttgga
     1201 aagaaaatga gattaagcag cgacgatttg cggatattac ttatgaccgg aattgctgct
     1261 ggtttcgggg cagtgtttgg tactccggtt gcaggggcag tgtttgcact tgaggttttg
     1321 gcaataggaa ggataaaata cgatgcgctg ctgccttgtt ttttagctgc agttctggct
     1381 aaccttgtgt gttccatgta tggcattcag catactcatt atcatatcga ttttcatgaa
     1441 caagcgactt ctggattttt caattttaat tataaaattc ttctttgggt aacagtttct
     1501 gcagttctgt ttgggttgac aagtaatctt ttttcagagc tttcgcatac cgtaaaaaat
     1561 gcagttcata aatatattaa atggaaatat gcaataccgg tagtgggtgg agttgtaatt
     1621 attgtgctga cttacttgtt gggcacaact gattacctgg gcctgggtgt tactactcaa
     1681 aacggtcagg gaagcagttt gttaaatgct tttaagccgg gtggcgtaga tactttcagt
     1741 tggatgtgga aagtcatttt taccgtaatt actttgagca ctggttttaa gggcggtgag
     1801 gtgactccac tcttttttat cggtgctaca ctgggtaatg tcattgctac ctataccgga
     1861 atgccggttg atttgtttgc tgcgctgggt tttatagccg tgtttgccgg agctaccaat
     1921 acaccactgg cttgtacgct tatgggagtt gaattgtttg gcggagagca tgtattgtat
     1981 tttgcattag cctgttttat tgcgtactat tttagtggac attccggtat ttatacttcc
     2041 cagcggctgg gcatatccaa agcaaatctc attgaaaatg cagatacaaa gactacgctg
     2101 aaaaatatcc gcgataacaa aaaacaaaac aatcaaaaga ctgactaaag caaggaaccg
     2161 gagtatttaa tttaagttta aaccgccaac tatcaactgt caactgattt ttgtatcttt
     2221 gcacttcttt ttttttgaaa gccaactaat gacatatcaa acatatactc tctccaacgg
     2281 aatcagaatc attcacaagc aggatatatc ggctgtagca tattgcggaa tcgttataaa
     2341 taccggatcg cgcgatgaag ccgagaacga acaaggcatg gcgcatttta ttgagcatat
     2401 gctttttaaa ggtaccgaaa aacgccgttc gggtcatatt attaaccgct tggagcatgt
     2461 tggaggcgaa ctcaatgcct atacttcgaa agaagaaaca gtggtttatg ccggtgtgtt
     2521 gaaagaatat ttcgagcgtg ccatggaatt gattgcggat atcgtgttgc attccaattt
     2581 tcctcaaaaa gaaatagaca aagaggtagt tattattctg gatgaaattc agtcgtataa
     2641 tgacagtcct tccgaactga tttttgatga ttttgaagaa cagctttttg acaaccatcc
     2701 cattggacac aatattcttg gaaaatcgga attgcttgaa aaatacagta ctgaagatgc
     2761 tttccgcttt gtaaagaagc attatcgtcc cgaagaactg gtgttttttg cattgggtga
     2821 actggatttc aaacaactgg ttcgttgggc tgaaaaatac ctgcatactg aaaatgacgg
     2881 gagcaaagtt tttgaacgga ttccaccaac ttcatataag cccattaaaa aagagataaa
     2941 taagaacacc catcaggttc attttatgat gggcaaccgg gcttatgatt tgttccaccc
     3001 caaccgaatg ggcatgtatt tgctcaataa tatactgggt ggcccgggta tgaatagctt
     3061 gctgaactta tcgttgcgcg aaaaacacgg gttggtgtac aatgtggaat cgagttatca
     3121 gccctttacc gataccggta tgtggagtgt gtatttcggt tgtgacccgg aaaatgtagc
     3181 tcgttgcgaa caattgattc acacagaatt acaaaaactt cgcgaacaac aactttcaga
     3241 aaattcgttg aaaaaatata agcttcagtt ggtgggccaa atggctattg cgtcggaaaa
     3301 taaagaaaac ctggcgttaa gtttaggcaa aagttttatg cgctacggaa aaattgatga
     3361 tttggaaact gtgaagcaac tgattgaaga agtgactgcc gaaaaattgc aggaaattgc
     3421 caacgaaatt tttgatatta agcaactttc agttttaaaa tatgtttaac tgaaaactgt
     3481 tacagctatg aacttagaag aatatattgc aaaacattcg gatgcggaac cggaatacct
     3541 ggcgaagctg aaccggataa cacatctgaa aatgttgaat ccacggatgc tttccggaca
     3601 ttttcaggga cgggtcatgg cattgttcag ccacatgatt cagcccaaaa gagtacttga
     3661 aattggtact ttcactggtt actctgcatt gtgtatggcc gaaggaatgc cggaagatgg
     3721 tattctgcat accattgatt gtgacgatga actggaaagt tttcttaccg aaacttttgc
     3781 aggctctgag catggacata aaataaaact tcatattggc gatgccctga ctgaggttgc
     3841 caaactggat gaagtttttg atttggcttt tattgacgcc gacaaagctg aatatgaggc
     3901 ttatttcgag gcagttcttc ctaaaattcg tgttggcggg tttatactgg ttgataatac
     3961 gttgtgggat gaaaaagtgc tccgcccggt cgaacccaag gataaagatg ccattgccat
     4021 tataaaattc aatgaattta ttgcagcaga taaccggata gaaaaagtgt tgttgccaat
     4081 tcgcgacgga cttacgttga taagaaagaa ataagataat gtgataatct aataatgtga
     4141 tgatatgcta atcagatgat tgtaaattgg catatcaaca aattagcaaa ttatcaaatt
     4201 accaaatcaa ttattatgta tatatacgaa ttagaattaa aagtacggga ttatgagtgt
     4261 gatatacaag gagtggtaaa taactccgtg tatcagaatt atctggagca tacgcgccac
     4321 gaatttatgg aagctaacga cctgagtttt gccgaattgc acgacagagg aattgatgcc
     4381 atggtttcca gcatcgaaat tgcttataaa acacctttac ggcccggcga taattttatt
     4441 tctaaacttt atgttacaaa ggaaggtgtg cgctacattt tccatcaggt catttatcgt
     4501 aagtcggata ataaattggc tatcaaggca aaagttcatg cggtggttgt gatagatggt
     4561 aaactggcaa gttcccttcc cgaatttgat gaactcgtaa tccgtagtca ggtaaaagtg
     4621 gaataaacta ttttgctgtc cggcttgttt atgcaaaagt aaaaaccctt aacctcttcc
     4681 gataaattcg gcataagttg cagggtgctt aattagttta ttatatctga ttctttttaa
     4741 actagttgta ttaattcaat tttaaaaaca ttaaaaacac tcttattccc ctttaggggt
     4801 taggggttaa taaacataga aatgaacgaa ttcttagaaa ctgaagaaaa aattgttcga
     4861 atgctaaaaa cggtgttcga tcccgaaatt ccggttaata tatatgattt aggtctgatt
     4921 tataaaattg atttggatga tgatggccat ttgactatag atatgacact tacggctcca
     4981 aattgcccgg ctgttgattt tattgtggaa gatgttcgga tgaaagtgtt gagcgttgag
     5041 ggaataacag atgtggatgt aaatatcgtg tttgaaccgg cttgggataa gaacatgatg
     5101 agcgaagaag ctcaacttga attaggattt ctttaagaag aagtttatag ttctgagttt
     5161 cgggttagga gttctgagaa tatagtatat ggtttgtagt aacaggttta tactatagaa
     5221 cgaatgtaat tgtcgactcg aaactataaa ctataaactc agaactcaga acacagaaca
     5281 cagaactcga aactataaac tcaaaactat agatggtcta ttttctttcg gatgcccatt
     5341 tgggatcatt acttgttaaa gacaaacgtg ctcacgaaaa aaaactcgtc gattggcttg
     5401 attcagtaaa gaacgatgcc agtgttatct atctggtggg tgatatattt gatttttggt
     5461 tcgaatacaa aacggtagta ccaaagggtt ttgtgcgttt tctgggtaaa gttgctgagt
     5521 tgatcgattc cggcatagaa attcattttt ttatcggcaa ccacgatatc tggacttttg
     5581 gttatctgca ggatgaagtt ggtttgatta tccataaaga acccttttta gttcaacacg
     5641 gttctaaaaa gttctacata gcccatggcg atgggatttc tgccaacgac catggattca
     5701 agcttatgcg gcagatattc catagcaata cagcccaaaa attattccgg ttgcttccac
     5761 cacagctggg gcaggggttc ggttacaact ggtcgaaaag caaccgcctg aagcacatgg
     5821 attatgatag caaatacctg ggcgaaaata atgaagcgct ggttctgttt gcaaagaaac
     5881 atgtgcaaac gcacgatgat attgacttta tgattttcgg ccacaggcat attgcgctcg
     5941 atttgcaaat aaagaaccaa aagcgggt
//
LOCUS       DATDNM010000374         2011 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1649868, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000374 DATDNM010000000
VERSION     DATDNM010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1649868"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..402
                     /locus_tag="VI413_06270"
     CDS             67..402
                     /locus_tag="VI413_06270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914263.1"
                     /translation="MRKLIIYIACVFGAAFMGGIFQIPCLSIIQNSNLGRKLGDIIGY
                     LNMLTFTLISLGAVLFSATTYLTNENSYAVFGVILAICISLSIFFFKSSPEFWMETKA
                     MLSIQKEKP"
     gene            complement(441..1673)
                     /locus_tag="VI413_06275"
     CDS             complement(441..1673)
                     /locus_tag="VI413_06275"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEY6914264.1"
                     /translation="MKRNIVCAFLMLCVFAPNLKAQDSLSHWSVGLKAGLDYYRVTPV
                     SSKTGAANYIDDMGWTFPGLFLEYTINPLIGFGGSVDYFTYDRNTAKGNTVDLTLFGS
                     VNLANLLAPKRTGFWNGLGVYGNWGGGLGYYSSKIVSTGAEQSLASPLVTSALNMEYK
                     LSNAWTLGLEGQYRYYFREDLGGISSVPGVDGSMVFGNDAFAVTIGLRYKFGTKSKKH
                     VRNMSVGEYNSLTDKTDYAIESRLKAIEDENVANKEKIKKLEADLKALNDEKDADKAK
                     LQNDLREIPLVQVVGDDSQEKMTVLLDVNFAFGSYKLQPKMKAILDQVALVLKVNKSW
                     TALVVSGHTDSIGGDEVNNKLSQNRASVVKDYLVSKGLVTSEISTAGFGKKNPKATNE
                     TKDGRYINRRAELVITKK"
BASE COUNT          611 a          443 c          283 g          674 t
ORIGIN      
        1 agtactaatt tctgaagtaa caaggccttt cgaaaccaaa taatctttca ccacacttgc
       61 tctgttttgc gaaagcttat tatttacatt gcttgtgtat ttggcgcagc gtttatgggc
      121 ggaatcttcc agatcccctg cctgtcaatt atccagaact caaacctggg ccgtaaattg
      181 ggtgatatca ttggttacct gaacatgctc acattcacgc tcatttcgtt gggtgcagtt
      241 cttttctctg ccaccactta ccttactaac gaaaacagct atgcggtatt cggggtcatt
      301 ctggctattt gcatttcgtt aagcatcttt ttcttcaaaa gttctccgga attttggatg
      361 gagacaaagg ccatgttatc tattcaaaaa gaaaagccat gaaaaacaat ctcatgactt
      421 ttctttttga acaagtaaat ttattttttc gtgataacta attctgcccg acgatttata
      481 tatcgtccat ctttagtttc attggttgct ttcggatttt tctttccaaa tccggcagta
      541 ctaatttctg aagtaacaag gcctttcgaa accaaataat ctttcaccac acttgctctg
      601 ttttgcgaaa gcttattatt tacttcatca ccaccaatac tgtcagtatg acctgaaact
      661 accagggctg tccatgattt atttactttt agtactaatg ctacctgatc cagtatagct
      721 ttcattttcg gttgtaattt atacgaaccg aatgcaaaat tcacatccaa aagaacagtc
      781 attttttcct ggctatcgtc accaacaact tgcactaacg ggatttctct taaatcattt
      841 tgcaatttag ctttatccgc atccttttca tcattcaggg cttttaaatc agcttccagt
      901 tttttaatct tttctttatt ggctacattt tcatcctcaa tcgctttaag cctgctctca
      961 attgcatagt cagtcttgtc agttaagctg ttatattctc caacactcat atttcgaaca
     1021 tgtttcttgc tctttgttcc aaatttataa cgaagaccaa tagttacagc aaatgcatca
     1081 ttgccaaata ccattgatcc gtctacaccc ggcactgagc ttatcccacc cagatcttcc
     1141 ctgaaataat atcgatattg accttcaagt cctaacgtcc acgcattgct aagcttatat
     1201 tccatattca gggcgcttgt taccagagga gacgccaggc tttgctctgc acctgtagat
     1261 acaattttac tggaataata tcctaatccg ccaccccagt taccatatac acccagtcca
     1321 ttccaaaaac ctgttcgttt tggcgcaagt aaatttgcta agttcactga accaaatagc
     1381 gtaagatcaa ccgtattacc tttagctgta tttctgtcat aagtaaagta atcaacactg
     1441 ccgccgaacc caatcaacgg attaattgtg tattccagaa ataggccggg gaaagtccaa
     1501 cccatatcat caatataatt agcggctcct gtttttgatg ataccggagt tacccgataa
     1561 taatcaagtc cggcttttag accaaccgac caatgcgaca aagaatcctg cgctttaagg
     1621 ttcggagcaa aaacacacag cattaaaaat gcacaaacta tatttctttt cataaccaag
     1681 attattttac ttataataat ttaaccttca gatatataac aattagaaac aactttttgt
     1741 ttatattaat tacttttaaa tacgtcaatt aaacaacaaa ctgaacaaca gacaaaacct
     1801 catattaagc tattgtacaa tacaggataa agaaattaat cgttttttca aagcaactct
     1861 ttattctcta aatttctgtt gtaaaacata caaaataaaa aacaatttta agagataatt
     1921 catacattgc cattcgattt ttcatcacac aaaattcctt atttttaagt attaattctt
     1981 ttaattttaa tacagtatga aagtatatca a
//
LOCUS       DATDNM010000375         2591 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2077521, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000375 DATDNM010000000
VERSION     DATDNM010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2591
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2077521"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..92)
                     /locus_tag="VI413_06280"
     tRNA            complement(19..92)
                     /locus_tag="VI413_06280"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(56..58),aa:Arg,seq:tct)
     gene            253..>2591
                     /gene="thrA"
                     /locus_tag="VI413_06285"
     CDS             253..>2591
                     /gene="thrA"
                     /locus_tag="VI413_06285"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008025257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009067 - aspartate family amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HEY6914265.1"
                     /translation="MKVLKFGGTSVGSANGILSVKKIVEAEQEPVIVVVSALSGVTDQ
                     LYKVSKLASEGDDAYLTEYQAMLARHLEVIESVVLPEKLTTVIEMVKIQFGDLSNILR
                     GIYLIKDSSAKIIDTIVSYGEGISSIIVANAINGAVHVDAKSFIKTNNQFDKHIVDFE
                     KTNALINEKFKNAPQICVCGGFISTDSKTNFVTNLGRGGSDYTAAILAAALNARLLEI
                     WTDVDGFMTADPRIINNTYVIEKLSFSEAMELCNFGAKVIYPPTIFPVFHKNIPVVIK
                     NTFNPEAAGTYISNEKVGEVSKAIKGISSINDTSLITIQGLGMVGVIGVNYRIFRILA
                     KNGISVFLVSQASSENTTSIGVRNTDSELAVKVLREEFAGEIALGEIDNIFSEDDLAT
                     VAIVGDNMKRTPGIAGKLFGTLGKNGINVVACAQGASETNISFVTDRKSLRKALNVIH
                     DSFFLSEYQVLNIFVVGVGTVGSSLLDQIKKQQQKLMSQNGLKLNVVGIASSKKMLFT
                     REGIDLENFKEELYSNGVDATSRHICQEIINMNIFNSVFVDCTANHEVADLYQNLLEN
                     NVSVVTANKLAASSAYENYSNLKETARRRGVKFLFETNVGAGLPIINTINNLINSGDH
                     IEKMEAVLSGTLNFIFNTISSEIPLSKAILMAKEAGFAEPDPRIDLSGKDVIRKLVIL
                     AREAGYKVEQADVEKNLFIPDKYFAGSLEDFWKTVPELDAEFEAKRLTLAAEGKRWRF
                     VAKMENGSCSVGLQEVDSLHPFFDLQGSNNIILITTERY"
BASE COUNT          812 a          506 c          542 g          731 t
ORIGIN      
        1 atggtgtttt tcgtttcgtg atccggatga gattcgaact catgacccac gccttagaag
       61 ggcgttgctc tatccagctg agctaccaga ccaatccttg ctttcatttc taaagcggtg
      121 caaaagtagt tcaaattttg caatgatgca atacttttgc ctaaaattgg ggaaaagcgc
      181 cgatatttgg cgaaaaatcg ctaattttgc cttccgtaaa acaaccagaa caatttaaca
      241 ttactcgtaa cgatgaaggt attaaaattc ggcggaacat ccgtaggttc agccaatggt
      301 attcttagtg taaaaaaaat agttgaagcg gagcaggaac ctgtaattgt tgttgtatcg
      361 gcactctcgg gcgttaccga ccaactgtac aaggtttcaa aattagcttc ggaaggtgat
      421 gatgcttatc ttacggaata ccaggcgatg cttgccagac atttggaagt gattgaatct
      481 gtagtgttac ccgaaaaact aacaacagtc attgaaatgg taaaaatcca gttcggtgac
      541 ctatctaata tcctccgtgg aatttatctg atcaaagatt catcagccaa aattattgat
      601 accattgtca gttatggcga aggtatttcg tctataattg ttgccaatgc cataaacgga
      661 gcagtgcatg ttgatgcaaa aagctttatc aaaaccaaca atcaattcga caaacacatt
      721 gttgattttg aaaaaacaaa tgcgctgatc aacgaaaaat tcaagaatgc tcctcaaatc
      781 tgtgtttgcg gcgggtttat ttccaccgac agcaaaacaa actttgtaac caatctcggc
      841 cgcggcggtt ccgattatac agcagctatt ctagctgcag cgctaaatgc ccgtttactt
      901 gaaatttgga cagatgtgga tggctttatg actgccgacc cacgcattat aaacaacacg
      961 tatgtaattg aaaaattgag tttcagcgaa gccatggagc tttgcaactt tggcgctaag
     1021 gtaatttacc cgcctaccat tttccctgtt tttcataaaa atattcctgt tgtaatcaaa
     1081 aatacattta atcctgaagc tgccggaact tatatttcta atgaaaaagt aggtgaagtc
     1141 tctaaagcta tcaaaggaat ttcgtcaatt aacgacactt cgctcatcac tattcaggga
     1201 ttgggtatgg taggcgttat tggtgtaaac taccgtattt tccgtattct ggctaaaaat
     1261 ggtatcagcg tattccttgt atcacaggct tcgtccgaaa atacaacttc tattggtgta
     1321 cgtaataccg acagcgaact ggctgtaaaa gtgttgcgtg aagaatttgc aggcgaaatt
     1381 gcgttgggcg aaattgacaa tattttctcg gaagatgatc tggcaacagt agccattgta
     1441 ggcgacaata tgaagcgtac accgggtatt gcaggcaaat tatttggtac tcttggaaaa
     1501 aacgggataa atgtagttgc ctgtgcgcag ggagcttccg aaaccaatat ctcttttgtt
     1561 acagaccgta aatcactgcg caaagcatta aacgtaattc acgactcatt cttcctgtca
     1621 gaatatcagg tactaaacat atttgttgtt ggagttggaa cagttggaag cagtctgctc
     1681 gaccagatca aaaaacaaca gcaaaaactg atgtctcaaa acgggctgaa actcaatgtt
     1741 gttggtattg cttcgagcaa aaaaatgctg tttacccgcg aaggtattga tctggaaaac
     1801 ttcaaagaag aattatattc aaacggagtt gacgcaacct ccagacacat ttgtcaggaa
     1861 atcatcaata tgaatatctt caattcagta tttgttgatt gtactgccaa tcacgaagta
     1921 gccgatttgt atcagaacct acttgagaat aacgtatcgg tggttacagc caacaagtta
     1981 gctgcatcgt ctgcttacga aaattattca aacctaaaag aaaccgctcg tcgtagaggt
     2041 gtaaaattct tatttgagac taatgttgga gccggacttc ccattatcaa cacaataaat
     2101 aatctgataa acagtggtga ccatattgaa aaaatggaag cggttttatc cggaacttta
     2161 aatttcattt tcaacaccat tagctctgaa atcccactga gcaaagccat tttaatggca
     2221 aaagaagctg gttttgcaga acctgatcct cgaattgacc tgagtggcaa agacgtaatt
     2281 cgcaaactgg ttattttggc tcgtgaagca ggctacaaag tagaacaagc cgatgttgag
     2341 aaaaacctgt ttattcctga taaatatttt gccggaagcc tggaagattt ctggaaaacg
     2401 gtaccggaat tggacgccga gtttgaagcc aaacgtctta cactggctgc agaaggcaaa
     2461 cgttggcgct ttgtggccaa aatggaaaat ggaagctgca gcgttggttt acaagaagtt
     2521 gatagtttac atcctttctt cgatttgcag ggaagcaata atatcatcct gattacaact
     2581 gaacgctaca a
//
LOCUS       DATDNM010000376         2220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1542142, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000376 DATDNM010000000
VERSION     DATDNM010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1542142"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..703)
                     /locus_tag="VI413_06290"
     CDS             complement(17..703)
                     /locus_tag="VI413_06290"
                     /inference="COORDINATES: protein motif:HMM:NF045041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914266.1"
                     /translation="MRKIILLAAVIFCGMISPAQEIFFPTKEGTVLVYKSFDKKGKEI
                     NTLKYTITQLKVMGHDMDITYQVESIDPKGKQGYTDEVTIHKKGDKLYFDMGSYINKA
                     AFQQNGKISADVLVTGNNMEMPSNPRAGDVLPDANVVMALDMGFMKMKMSADVTNRKV
                     EAVEDITVKAGTFKSYKFTSDVTSSALGIKMKNNSIEWYAKGIGMLKTQTYDKNGNLL
                     SYMELVELKE"
     gene            1033..1203
                     /locus_tag="VI413_06295"
     CDS             1033..1203
                     /locus_tag="VI413_06295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914267.1"
                     /translation="MKTPISDKVVENRSFFSIVLIFISSQLARPAYLNIIGVLGFSDS
                     SEFLPAVLFYFY"
     gene            complement(1233..2156)
                     /locus_tag="VI413_06300"
     CDS             complement(1233..2156)
                     /locus_tag="VI413_06300"
                     /inference="COORDINATES: protein motif:HMM:NF012705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene/phytoene synthase family protein"
                     /protein_id="HEY6914268.1"
                     /translation="MKLYTNIFDSIDFDKIIDHPNILIAAHFWDTERYEAAKTCYKFM
                     RAIDDLIDDYKSEHKTIESDEKAHFEADVNSWINTISTAAANDPAHAELIETVLKFRI
                     PAWPLEAFAKSMMYDIYHDGFPTLNAFLDYAAGASVAPASIFVHLCGLTRENGQYIEP
                     AFDVKWAATPCAIFSYLVHIIRDFVKDHKHNLNYFPDDLIEKYGLNREKLLAIAQGAE
                     IPKGFKEMIRELYTVADEYRHKTYEIMQEIKPLLEPRSQLSLEIIFDLYLMVFERIDI
                     DNGTFSTKELNPTPEEIKARVRKVIDKFEMV"
BASE COUNT          596 a          428 c          443 g          753 t
ORIGIN      
        1 gggtaagatt ctttgtttac tctttcaact ctaccaattc catatacgac agaaggtttc
       61 catttttatc gtaggtttga gtttttagca tgccaattcc tttagcatac cattctatgc
      121 tattgttttt catttttata cccaaagcac tggaggtaac atcacttgta aatttgtaac
      181 ttttgaaagt gcctgcctta acggtaatat cttctactgc ctccactttt ctattcgtca
      241 catcagctga cattttcatt ttcatgaacc ccatatccag cgccattacc acgtttgcat
      301 ccgggagtac atcgcccgcc ctgggatttg aaggcatttc catgttgtta cccgtaacca
      361 gcacgtcggc cgaaatttta ccattttgtt ggaaggcagc tttattgata taactgccca
      421 tgtcgaaata aagcttatct ccttttttgt gaatggtaac ttcgtctgtg taaccctgtt
      481 tgcctttggg atcaatggat tcaacctgat aagtaatatc catgtcgtgt cccattactt
      541 ttaactgcgt aatagtgtac ttcaacgtgt tgatctcttt gcctttctta tcgaacgatt
      601 tgtaaacaag aacggttccc tctttggtag ggaagaagat ttcctgtgct ggtgaaatca
      661 ttccacagaa aatgactgct gctaaaagaa taatttttct catttttttt agatttgtag
      721 ttggttaaaa tataattgaa tgaactcctg agaaaaaaat gctgagaatg gtacatttgg
      781 aatgtgtaaa ttgcatgaaa tcagtgtgta taaaacaaaa tagtaaatta gaatgttctg
      841 gcatattgcg tgataacaga ataattaacc agggaaagtg atagtttttt gcttactaaa
      901 gaagttatcc ataggcaaac ctgagagaaa cgctcaagct ctcatatgca ctacgaacct
      961 aaattctgat attgtggagt tttacaggaa ggaaaaggga gagtattcag gtgtttctat
     1021 ccaataagta agatgaaaac tccgatttcc gacaaagtgg tggaaaaccg gagtttcttt
     1081 agtattgtat tgatttttat ttccagccag cttgcccgac cagcatattt aaatataatt
     1141 ggagttcttg gtttttcaga tagttccgag tttttgccgg cagttctgtt ttatttctat
     1201 tgagatttgt tttagttggg cttgggaatt atttatacca tctcaaattt atctattacc
     1261 ttcctgaccc ttgcctttat ttcttccgga gtcgggttta attctttggt tgagaacgtt
     1321 ccgttgtcaa tatcaatccg ctcgaagacc atgaggtata gatcaaagat aatttcgagg
     1381 ctcagttggc ttcggggttc aaggagtggc tttatttcct gcatgatttc gtaagtcttg
     1441 tgccggtatt catcggctac cgtgtacaat tcgcgtatca tttctttgaa acctttagga
     1501 atttcagctc cctgggctat agccaggagt ttttcgcgat tcagtccgta tttctcaatt
     1561 aaatcatccg gaaaataatt gaggttgtgt ttatggtctt tcacaaaatc gcggataatg
     1621 tgcacaaggt aactgaatat ggcgcacgga gtcgcggccc attttacatc aaatgccggc
     1681 tcaatatatt gcccgttttc acgcgtgagc ccgcacaaat gtacaaatat ggaggctggt
     1741 gctacagaag cgccggcagc atagtccaaa aatgcattca gagtagggaa gccatcgtgg
     1801 taaatgtcat acatcatcga tttggcaaat gcctcgagcg gccacgctgg aatgcggaat
     1861 ttcaaaaccg tttcaatcaa ctcagcatgt gccggatcat tagcagctgc ggttgatatt
     1921 gtgtttatcc acgaattcac atcggcttca aaatgcgctt tttcgtcgga ctcaatagtt
     1981 ttatgttccg atttataatc atcgattaaa tcatcgatag ccctcataaa cttataacag
     2041 gttttagccg cttcgtatct ttctgtatcc caaaagtgag ctgcaattag gatattcgga
     2101 tgatcgataa ttttatcgaa atcgatggag tcgaaaatgt tagtataaag tttcataggt
     2161 tttaatgaat tcccctttag gggttagggg ctatttttat ctcttttatt attcgttcgc
//
LOCUS       DATDNM010000377         4564 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_475200, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000377 DATDNM010000000
VERSION     DATDNM010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4564
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475200"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(140..1882)
                     /locus_tag="VI413_06305"
     CDS             complement(140..1882)
                     /locus_tag="VI413_06305"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinan endo-1,5-alpha-L-arabinosidase"
                     /protein_id="HEY6914269.1"
                     /translation="MRKTFVIVLGILCMATLFAEDKVYIHKKAGSLLGYKVSEIDSVK
                     FTSNNTELTVYKADNTTTGMFITAIDSIKFANETAVSYSAPTYADDYSSISGYSNRLR
                     WNLGNVHDPSVVKCGDTWYMYGTDASYGNVLNGYGHYPYKTSKDLVNWYYTGSAMSQT
                     PPAWVKDSLNAIRARLGLAAISSPSYGYWAPCIRKVGNKYRMYYSIIADNFIGNGLIN
                     NTTNFDNTWTERAFIGMMESTDLATNKWVDKGYVISSVSDKTTGTPPWYRSSYTGDWS
                     AYFKWNAIDPTYIVTPEGDHWLIYGSWHSGIPEVKLDSATGKPLQLKTLADYGTRIAR
                     RSNNDANRWQAQEGPEIMYNPKTGYYYLFLAYDELSVNYNTRVCRSRTITGPFLGYNG
                     ASITTGAECFPIITHPYKFNNHSGWVGFSHCCVFQDTDTEQWYYCSQARLPANTNGNA
                     YSNAIMMGHVRTIMWTDDGWPVVLPERYAAVPQTIICDNDLVGTWEHITMNYVAGVQQ
                     TSTTLTLAANYVATGAFIGVWSYNATTKTLTIGSQKLKVQRELDWEASPRVPTIVYTG
                     LNAGGKSLWGKKVN"
     gene            complement(1879..2370)
                     /locus_tag="VI413_06310"
     CDS             complement(1879..2370)
                     /locus_tag="VI413_06310"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914270.1"
                     /translation="MKNSYLYVGLLLIACSGLMSGVAAQNSLILKLNNGTGTGIPLSS
                     LNKITFSSGNMIVGKIDAGSDTYLLSDIQKMTFGLFSGVEEITADKTLPVVYPNPAST
                     YIRLNNVADERNLEVKIYRIDGVQVLAQTLQSASDVININQLSQGIYLLKVSNQILKF
                     TKQ"
     gene            2806..>4564
                     /locus_tag="VI413_06315"
     CDS             2806..>4564
                     /locus_tag="VI413_06315"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6914271.1"
                     /translation="MKKTILLTILVLFCALTGWSLPYKISYLTADNGLSRNLVDYIFR
                     DSRGFMWLCTSKGLDRYDGYEFIHFDSRNPVNPLQSDNVHCVQEDVNGDLWIGTENGL
                     YFLNYKTGEILNSAKKLNSKQDFTNHQIIFINKDEQGSLWVGYNSGLTKIHLAGSEIS
                     AEEVYHSNTAITACLIYNGNILLSRDNEIFRLIKNNNGKYQRINADNKLRQFAGAVNT
                     MYYDNGLIWIGTANGLYKYEPASETLTRYMTTFSRPNELTSSYITDITKNKEGQLLIG
                     TLIGLNIYDYHTDSFTRITSESFAEGGALNNNFINCLLVVDNTIWIGTDKGGVNLLSP
                     SQSIFENIGNEPGNPYSLSKNPVNAIYEDKDGDLIVGTVEGGLNIRKKGSTGFMHSYA
                     QLGNARSLSHNSVSCICQDYNGDYWIGTWGLGINRLKYKDKYKPVFDRFQEMAPQNSL
                     QSNFIAALVPDSRNKGLWIGTREGIDFMDIATGKFRHILNYLPQDMRIRFVTGMIMDS
                     KQRLWVGTSYGLLCIYLNKTSLAKNKIKYRYYRYLLTNPSSLVTEKINCILETKDKRI
                     WFGSNGNGIYTLDEKSDTLK"
BASE COUNT         1374 a         1010 c          950 g         1230 t
ORIGIN      
        1 aaagtggaca attggccata gtaagtggac aaatttctat acgctatttc tccctatgaa
       61 ctctatatgc tttaaaacaa aaaaatgcgg aaacagtttt caccgtcttc gcattttgta
      121 agaaaacaac accggtttac taattcactt ttttacccca taaagatttt ccaccggcat
      181 tcaaaccggt atacactata gtaggtacac gcggcgaggc ttcccagtcg agctcgcgtt
      241 gtacttttag tttttgggag ccaatggtga gtgtttttgt ggtggcattg tacgaccaca
      301 caccgataaa tgcccctgtg gctacatagt tggcagccaa tgtaagtgtg gtggatgttt
      361 gttgcacgcc ggccacataa ttcatggtga tatgctccca tgttcccacc aggtcattat
      421 cgcaaataat tgtttgcgga acagcggcat agcgctcggg caacaccacg ggccatccgt
      481 catccgtcca cataattgta cgcacatgcc ccatcatgat ggcgttgctg taggcatttc
      541 cgttggtatt ggccggcaaa cgggcctgcg aacaataata ccactgctcg gtatcggtat
      601 cctgaaacac gcaacaatgc gaaaacccta cccaacctga atggttgttg aatttatacg
      661 gatgggtgat aattggaaaa cactcggctc cggtagttat actggctccg ttgtaaccca
      721 gaaatggccc tgtaatagtc ctggagcggc aaacgcgcgt gttgtaattt accgacaact
      781 catcgtaagc caggaataaa taataatatc cggtttttgg attgtacatt atttccggcc
      841 cttcctgcgc ctgccagcgg ttggcatcat tgtttgagcg gcgcgcaata cgtgttccgt
      901 agtcggccag tgttttgagc tgaagcggtt ttccggttgc cgaatccagt ttcacttcgg
      961 gaattccgct gtgccacgaa ccataaatga gccagtggtc gccttcggga gtaacaatat
     1021 atgtggggtc aatagcattc catttaaaat aagcactcca gtcgcccgta taacttgagc
     1081 ggtaccaggg cggggtaccc gttgttttgt cgctcaccga actgatcacg taccctttgt
     1141 ccacccattt attagtggcc aaatcggtac tttccatcat accaataaag gcgcgctcgg
     1201 tccaggtatt gtcaaagttg gtagtgttgt ttatcaatcc gtttccaata aaattatccg
     1261 caataatact gtaatacatg cggtatttat tgcctacttt gcgtatgcag ggtgcccaat
     1321 agccgtaact cggactggaa atggcagcca atcccaatct ggcccgtatg gcattgagcg
     1381 aatctttcac ccacgccgga ggggtttggc tcatggcgct tccggtgtaa taccagttta
     1441 ccaaatcctt tgatgttttg tacgggtaat gtccgtaacc gttcagcaca ttgccatacg
     1501 aagcgtcggt gccgtacatg taccacgtat cgccacattt tacaacagac gggtcgtgca
     1561 cgtttcccag attccaccgc aggcggttgg agtaaccgga tattgatgaa taatcgtcgg
     1621 catacgttgg tgcggaatat gaaacagccg tttcgttggc aaattttatg ctgtcaatag
     1681 ccgtgataaa catgccggta gttgtattgt cggccttata aaccgtcagt tcggtgttgt
     1741 tgctcgtaaa cttcacactg tcaatttccg aaactttata cccaagcaat gaacctgcct
     1801 ttttatgtat atacacttta tcctcggcaa acaacgtcgc catgcataaa ataccgagaa
     1861 cgatcacaaa agtctttctc attgcttcgt aaattttaaa atttgattag atactttcag
     1921 caaataaatg ccttgggaaa gttggttgat attgataaca tcggaagccg attgaagcgt
     1981 ttgagccagc acctgaacgc catcaatgcg ataaatcttc acttcgaggt ttcgctcatc
     2041 tgcaacatta ttcaacctta tatatgtgga tgccggattt gggtaaacaa ctggaagcgt
     2101 tttgtcagca gtaatttcct ccacaccgga aaacaatccg aaggtcattt tctgaatatc
     2161 ggaaagcaaa taggtatcgg aacctgcatc gatttttccc actatcatat tcccggacga
     2221 aaaagtaatc ttatttaaac tactcaacgg aattcctgta ccggtaccat tgtttagttt
     2281 taatatcaaa ctattctgag ctgctactcc actcattaag ccggagcagg caatcaaaag
     2341 tagtccgaca tacaaatatg aattcttcat gtgtatattt tttattgtaa tatttttcac
     2401 attattcttt taaacagaag gcctaaacca atctgattat gaatgataca aagatatata
     2461 ttattggcag ctgttgtagt ggacaaaaac acattgatgg aggatattta ttgcacaaaa
     2521 atgtcaaaca gccctgtttg gtccaaaaaa gaacacggaa ggaaaattca acaacaaaat
     2581 atcaggcaga attaatttct ttttacacac catctccgaa cataaaacaa ccgtgctgct
     2641 tcgacacaaa aaccactatt aatcagcagc aaaacaagat tataaccccc agcaaacaac
     2701 agccataaag tatgctccga aaattatcct ctttaaatga acatgcatcc tcttactgat
     2761 tgacatattt tatctatttt cgtacctgac tttttatcta aaagcatgaa gaaaacaatt
     2821 ttactgacca ttttagtcct gttttgcgcc cttacaggct ggtcgctccc ctataaaata
     2881 agctatctga cagccgacaa cggattgtcc cgcaacctgg ttgactatat tttccgcgat
     2941 tcgcgtggat tcatgtggct gtgtaccagc aaagggcttg acaggtatga tggatacgaa
     3001 tttatacact tcgacagccg caacccggta aacccactcc aaagcgacaa tgttcactgc
     3061 gtacaagaag acgtaaatgg cgatttgtgg attggaactg aaaacggact ttatttcctg
     3121 aactataaaa ccggagaaat cctgaactcg gccaaaaaac tgaattcgaa acaagacttc
     3181 acaaaccatc agattatttt catcaataaa gatgagcagg gaagtctatg ggttggttac
     3241 aattcgggcc tgaccaaaat ccatctcgcc ggttccgaaa tatcggcaga agaagtttat
     3301 cattctaata cggctatcac tgcctgcctc atttacaatg gaaacatttt actgagccgc
     3361 gacaatgaaa ttttccggtt gattaaaaac aacaacggga aatatcaacg aataaatgcc
     3421 gacaacaaac taaggcagtt tgccggtgca gtaaatacaa tgtactacga caatggcctg
     3481 atatggatag gcaccgccaa cggattatac aaatatgagc ccgcaagcga gactctcacc
     3541 aggtacatga caacattttc acgaccaaat gaactgacat caagttatat aaccgacatc
     3601 acaaaaaaca aagaaggcca gttattaatc ggaactttaa tcgggttgaa tatatatgat
     3661 taccacaccg attcctttac cagaataaca tcagaatcgt ttgccgaagg gggcgcactg
     3721 aataataact ttataaactg cctgctggtt gtggataaca cgatatggat tgggactgac
     3781 aaaggcggtg taaacctgct gagtccgagc caaagcattt ttgaaaatat cggaaatgaa
     3841 ccaggcaatc cgtacagttt atccaaaaac cctgtaaatg caatatacga agacaaagac
     3901 ggtgatctca ttgttggcac agtggagggc ggactgaata ttcgaaaaaa aggcagcaca
     3961 ggctttatgc attcgtacgc acaacttggc aacgccagat cactaagtca taattcggtg
     4021 agttgtattt gccaggatta taacggcgat tactggattg gaacctgggg gcttggcatt
     4081 aaccggctga aatataaaga caaatacaaa ccggtttttg acaggtttca agagatggca
     4141 ccgcaaaaca gccttcagag caattttata gcagccttgg ttcctgatag cagaaataaa
     4201 ggcttatgga ttggaacgcg tgaaggaatt gacttcatgg atattgcaac aggcaaattc
     4261 cgacacatac tgaattacct gccgcaggat atgcgtatca gatttgtgac gggaatgatt
     4321 atggattcga aacaacgcct gtgggtaggt accagctatg gacttttgtg tatttacctg
     4381 aataaaacca gcctggcaaa aaataaaatc aaatacaggt attaccggta tttactgacg
     4441 aatccgtcat cgctggtcac tgaaaaaatc aactgcattc tcgaaaccaa agataaacgc
     4501 atttggttcg gaagcaatgg gaatggtatt tacacgctgg atgaaaaatc ggacacactg
     4561 aaat
//
LOCUS       DATDNM010000378         9447 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_582375, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000378 DATDNM010000000
VERSION     DATDNM010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 9447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9447
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582375"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..258)
                     /locus_tag="VI413_06320"
     CDS             complement(<1..258)
                     /locus_tag="VI413_06320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HEY6914272.1"
                     /translation="MKSEFTERIQKISINAGFTCPNRDGSKGRGGCTYCNNQSFSPEY
                     CKPVKTVSQQVEEGINFFKHKYQNQYYLAYFQSYTNTYDSLD"
     gene            468..1325
                     /locus_tag="VI413_06325"
     CDS             468..1325
                     /locus_tag="VI413_06325"
                     /inference="COORDINATES: protein motif:HMM:TIGR01856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphatase"
                     /protein_id="HEY6914273.1"
                     /translation="MYWSNYHSHSTFCDGRSSMEEFVKFAIAKGVKRYGFSSHAPLPF
                     NTHWNMKLDDFTDYQTEFNRLKEKYSSDIELYIGLEIDYINNFFEARNELYDIKHFDY
                     LIGSIHFMDQLPEGNFWCVDGPFDDFNAGLQTLFGGDIRLAAERFFDISMLMIQKDGF
                     DIVGHLDKIAFNGAKCPGFNITNSWYKNRVGDLLQLIKDKDLILEINTKSLNDAGVTY
                     PDAQFFPLIKELQIPIMVNSDCHYPTNVIDGFVPTFKALKKVGFKTMHQLINGSWQAV
                     EFNENGLIC"
     gene            1574..2986
                     /gene="amrB"
                     /locus_tag="VI413_06330"
     CDS             1574..2986
                     /gene="amrB"
                     /locus_tag="VI413_06330"
                     /inference="COORDINATES: protein motif:HMM:TIGR04336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein B"
                     /protein_id="HEY6914274.1"
                     /translation="MMTIDRKPAVAGQFYPADKDKLQHEVQDLLQSAEPKQCNQVRAI
                     ICPHAGYVYSGEIAASAFNQIDADANYKRIFLIASSHRDTFNNGAVYCMGNYQMPYGE
                     VQVDTEFGKSLVEKFPDAFTDNPAPHQNEHSLEVQLPFLHYALKTNYRIVPIIIGTFD
                     PVVCKRIARALKPYLNSENLFVISSDFSHYPEYADARQVDAITKDAILSNNPETLLDT
                     LAANSKKHIPNLATSLCGWTSVLTLLYMTSQNDSFEYRAIKYRNSGDAKYVGERDQVV
                     GYWSIAVSEKKSEGFQLSVSDKETLLDIARKSIEDHCHHQRKSDLKTYKFSETLETKC
                     GAFVSLHKKGALRGCIGLISSDLPLYKVIQEMAISACANDHRFRPVEAEELPDIDIEI
                     SVLSPLRKIEDVSEIELGKHGILIEKYHRTGLFLPQVATETGWTKEEFLGHCARDKAG
                     LDWDEWKSANIHIFTATVFK"
     gene            complement(3116..4150)
                     /gene="amrS"
                     /locus_tag="VI413_06335"
     CDS             complement(3116..4150)
                     /gene="amrS"
                     /locus_tag="VI413_06335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013617435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system radical SAM enzyme"
                     /protein_id="HEY6914275.1"
                     /translation="MKTHNTVEFSRLASFQEVLPNKVVRCHICPHNCLIHENKTGLCH
                     TRINIGGELYTTAYGNPCSVSMDPIEKKPLFHFFPASKIYSLATAGCNFRCLNCQNWQ
                     ISQTSPQEIDHADLMPEELVHQALRHGSDLIAFTYTEPTVFYEYMLDTAKAARAKGIK
                     TVLISNGFINPAPLLELCPYLSAANIDLKCFNDEVYRRLAGGRLQPVLDTLKTLRENG
                     VWLEITNLVVPGYSDSTEMITDMCEWLVRNGFASTPLHFSRFFPTYNLPDVPPTDKNV
                     LIQAKEIAMNSGMKYVYIGNLPGLHEENTYCPNCKKRLVERVGFAVTENNIRTGKCSF
                     CGENIEGVWE"
     gene            complement(4361..5356)
                     /locus_tag="VI413_06340"
     CDS             complement(4361..5356)
                     /locus_tag="VI413_06340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914276.1"
                     /translation="MKLEQIIDEQTLQWLLEKDNPSVRYFTMKQLLGKQEHEVTEARM
                     EIMKSGVVPAILEKQSEEGFWGNRERFYSNKYAGTVWQLIILAGLGADPANEGIKKAC
                     EFILQYSQDAASHGFAVNGNLKNGGRQSEVIPCLTGNLVYSLQQLGYANDERVLKGID
                     WIVKYQRADDGIPNPPQGWPYDRFDICFGTHTCHMGVVKSLKALSAVPVEKRTTEIEN
                     KIKELCEYILLHHIYKKSHDTAKVSKPGWLKLGFPLMYQTDILEILEILTGLNCHDNR
                     MDDAINLLKAKQNNDKRWILENTFNGKMIENIEQKGEPSKWITLKATTVLMKYAE"
     gene            complement(5431..6498)
                     /locus_tag="VI413_06345"
     CDS             complement(5431..6498)
                     /locus_tag="VI413_06345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914277.1"
                     /translation="MKTKFNILIFPWAITSMLLLFGSCCKNDVEDLNKKNPFEVTTLK
                     QLTNNIPYQDLGEGKIVFDRVNGSDGSGFYVIDIDNKKSYGFRLNSLTRWPYISPDGT
                     KIACSLLNSADWNSIWNIYCLDIDGTNSFRVSHSGYERYPTWTPDGLKILFHLNVAGP
                     LYMLSAKEDATDKVELTRFNYGDDPYWVIMPSGGFSISTDGKLVCASKGTPQTTGILK
                     IEPYVGKSGVTTLVPQSDNQWLESPVFSPDGTKIAFVTLERDSLGNQQAVAIKSMNPD
                     GTNLTQVVRVKTYNESISWMGYERLGSVCWSPDGKKILFTALNKQNGGYHLMVINADG
                     SGLTQVTDDMNAYDYDVSWGR"
     gene            complement(6853..7710)
                     /locus_tag="VI413_06350"
     CDS             complement(6853..7710)
                     /locus_tag="VI413_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006841513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914278.1"
                     /translation="MKKLVLILLAYTSLNAFGQNDLKIKAQPIVDEGKRLYKSEMASW
                     YGTDLFLANYKDRANVGGYFSYTQDEISKCIFFSKADKPKVIGTISFDSSFSTKSAKM
                     DLTERDFSNPENDLYTIRKIALAKINSDTLFRKYNNTDLNIIPVIFDNEKKVYVLTGP
                     KQNGVVIFGNDYLLTFDNNNNLTNAKRLHKNIIPIGYGDKQKGGNEIEATIHSHLPET
                     GDFITATDICTLMLYEKFAKWKRHNVVSKKYLNVWNCETDELYVIPMETIQKINKDVE
                     KKKSSKRDI"
     gene            complement(7727..8338)
                     /locus_tag="VI413_06355"
     CDS             complement(7727..8338)
                     /locus_tag="VI413_06355"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018336787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEY6914279.1"
                     /translation="MKTRIRKTTKADFLITENITREAFWNVYKPGCDEHLVLHNVRNG
                     NSYIAELDMVAVVENEIIGHIISTKAKVVDVQNTEHEVLCVGPVSVLPDYQKQGMGSE
                     LINESIKVAKESGYPAMILFGNPDYYHRFGFRNAQEYGITTKYYENFEPFMALELQTN
                     GLENITGRFFEDNAFTTEPNELIEFEKQFPYKEKMVTDTQLEH"
     gene            complement(8786..>9447)
                     /locus_tag="VI413_06360"
     CDS             complement(8786..>9447)
                     /locus_tag="VI413_06360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914280.1"
                     /translation="NAHSLGRYSLKKMKKMKSVLEKSYEIDLNDSSEIMKFYEENKLY
                     FDHYEKITDIEVIEDTILIKQKYCEAIERKNHFKDAAFVLEHIFILLDKLKGNSEEYE
                     YYYERALFYNGVILGRQKKYKESNARFKRLIVIDPKNENYQDWLDTNIERIINKKLDI
                     FYYIIPAIWGFILVTKDKYVGKFYLTIETFLFVIMIGIYVYQRYIQNIIREKRRKKTN
                     C"
BASE COUNT         2564 a         1888 c         1842 g         3153 t
ORIGIN      
        1 gtcaagcgaa tcgtaggtgt tggtatacga ctgaaaataa gccaggtaat attggttttg
       61 atatttgtgt ttaaagaagt tgataccttc ttccacctgt tggctgacgg tttttacagg
      121 tttgcaatat tccgggctaa agctttggtt attgcaatag gtgcaaccac ctcggccttt
      181 acttccgtcc ctgttagggc aggtaaagcc tgcattgatg gatatttttt gaatacgttc
      241 cgtgaattct gatttcataa cctgattgta attcaggtat cgttgctgat cgggaagttg
      301 tatcggggat atttctgtca tttgtagttc cattctgttt gcaaagatac tataaccgtg
      361 ctacaaacta aaaagtttag cccgcgattt ttaatatgga tatatgggtc cttttcgtta
      421 tttttgccgg agaaatagat tgttaactat aaactaccta cttattcatg tattggtcaa
      481 attatcatag tcattctaca ttttgtgatg gacggagctc gatggaggaa tttgtaaaat
      541 tcgccattgc caaaggagtg aaacggtacg gattttcgtc gcacgcacca cttccgttca
      601 atacacactg gaatatgaaa ctggatgatt ttaccgatta tcagaccgaa tttaataggt
      661 taaaggaaaa gtatagttcg gatattgagt tgtatatcgg cctggaaata gattatatca
      721 ataacttttt tgaggcccgg aatgaattat atgatatcaa acacttcgat tacctgattg
      781 gttccattca ttttatggat caattgcctg aagggaattt ttggtgtgta gatggtcctt
      841 tcgatgattt taatgcaggg ttgcaaacgc tttttggtgg tgatatccgg ctggctgcag
      901 aacgtttttt tgacatcagc atgctgatga ttcaaaaaga tggttttgac attgttggcc
      961 atctggataa aattgctttc aatggagcta aatgcccggg tttcaatatc acaaatagtt
     1021 ggtacaaaaa cagggtggga gacctgcttc aactgataaa agacaaagat ctgattctcg
     1081 aaatcaatac aaaatcgctt aatgatgccg gggtgaccta tcctgatgct caattctttc
     1141 cgcttataaa ggaacttcaa attccgatta tggtgaattc cgattgccat tatccaacca
     1201 acgtcatcga cggttttgtg ccgacattca aggcgctgaa gaaagttggt tttaaaacga
     1261 tgcaccaact tataaacggt tcgtggcaag ctgtggaatt caatgaaaat ggattgatct
     1321 gttgagcgaa ttcaacctgc cggattatct gatctatttt gcttttttat ctaaataatg
     1381 ggttcataac tagaaatata gtattaaatt tgaagcataa ttgagtcaac ttgcatcatt
     1441 acatgtgccc cgtatcaaaa gagatacaaa cgcaaattta aataatttgt aattcgatat
     1501 gctcaaacga gatatttcaa catgtgaata atgagatttg tgtgaatttg cgttcaaata
     1561 atattttatt gccatgatga ccatagaccg aaaacccgcc gtggcaggac aattttatcc
     1621 cgccgataag gacaagctgc aacatgaagt ccaggatctc ctccagtcag ctgagcctaa
     1681 acaatgtaat caggtacgtg caattatttg cccacatgcg ggatatgttt attccggaga
     1741 aattgcggct tccgccttca accagattga tgcagacgcg aattacaaac ggatttttct
     1801 cattgcttca tcgcatcgcg acacttttaa taacggggcg gtttattgca tgggcaatta
     1861 ccagatgcca tacggtgaag tgcaggttga tacagagttt ggcaaatcgc tggttgagaa
     1921 gtttccggat gcttttacag ataatccggc accgcaccaa aacgaacata gcctggaagt
     1981 gcaactgcca tttttgcatt acgccctcaa aacgaattac cgcatcgtgc ctattatcat
     2041 tggtactttt gatccagttg tttgcaagcg tattgcccgt gcattaaaac cttacctgaa
     2101 ttcggaaaac ctgtttgtta tcagttcgga tttttcgcat tatcccgaat atgccgatgc
     2161 caggcaggta gatgcaatta ccaaagacgc tattctatcc aataatccgg aaacattgct
     2221 ggatacacta gccgctaatt ccaaaaaaca cattccaaat ctggcaacaa gcctttgcgg
     2281 gtggacatcg gtgctgacac tgctgtacat gacttcacag aatgattcgt ttgagtaccg
     2341 cgccattaaa taccgaaact cgggtgatgc aaaatatgta ggggaacggg accaggtggt
     2401 gggctattgg agtattgctg tttcggaaaa gaagagcgaa ggttttcaac tgtccgtttc
     2461 ggataaagaa acgctgctgg atattgcccg aaaaagcatt gaagatcatt gccatcatca
     2521 aaggaagtcg gacctgaaaa catataaatt ttcggaaacg ctggaaacaa aatgtggtgc
     2581 ctttgtctcg ttacacaaga aaggcgcttt gcggggatgt ataggtctta tctcatctga
     2641 tttgccgttg tataaagtta tccaggaaat ggctatatca gcatgtgcaa acgatcatcg
     2701 cttcagaccg gtagaagcag aagagttgcc ggatattgac attgaaattt cagtactttc
     2761 gccattgaga aagattgagg atgtttccga gatagagttg ggcaagcatg gtattcttat
     2821 tgagaaatat catcgtacag gtttgtttct gccacaggtt gccaccgaaa ccggttggac
     2881 taaagaagag tttcttggac attgcgcacg cgataaagct ggcttggact gggatgaatg
     2941 gaagtcggca aatattcaca tctttacagc aactgtattt aagtaagtag tatcgattat
     3001 gacccccaac ccccaaatgg ggactttgag gcgcagtatc tgatgcattc atttacgtca
     3061 aaagtctcgt tgaactattt tttagccccc atttgggggg tgggggtatg caatattatt
     3121 cccaaactcc ctcaatattt tcaccgcaga aactgcattt cccggttcga atattattct
     3181 cagtcactgc gaaccctacc cgttccacca accgtttttt gcagttggga caataggtgt
     3241 tttcttcgtg caaccccggc agattcccta tatacacgta tttcattcca ctattcatgg
     3301 ctatttcttt tgcctggatc aatacatttt tatcggtagg cggtacgtcc ggcagattgt
     3361 aagttgggaa gaaacggctg aaatggagtg gggtagaagc aaagccattt ctaaccagcc
     3421 actcgcacat gtcggttatc atttcagtac tatccgaata accgggtaca acgaggttcg
     3481 ttatttcgag ccagacccca ttctcccgga gtgttttcaa tgtgtcgagc accggttgca
     3541 gccgccctcc tgccaatcgt cggtacactt catcgttgaa acatttcagg tcgatgttgg
     3601 cagcgctcag atacggacag agttcaagca gaggtgccgg attgataaaa ccattggata
     3661 tcaatactgt ttttatgcct ttggcacggg cggctttggc agtatcgagc atatattcgt
     3721 aaaaaacagt tggctcggtg taggtaaaag caatcagatc cgagccgtga cgcaaagcct
     3781 gatggaccag ttcttctggc attaaatcgg catggtcaat ttcctgcggt gaagtctgcg
     3841 aaatctgcca gttctggcaa ttgaggcaac ggaagttgca accggcagtg gctaatgagt
     3901 aaattttact tgcggggaag aaatgaaaca gcggcttttt ttctatcggg tccatactga
     3961 ccgaacaggg atttccgtag gctgtggtat atagctcacc gccaatgttg atcctggtat
     4021 ggcataaccc ggttttattt tcatgaataa ggcaattgtg cggacaaatg tgacaacgga
     4081 ccactttgtt tggcagcact tcctgaaacg atgctaaccg gctaaattca actgtattgt
     4141 gagtcttcat tttgtttgtt tcaataattc aacgtaaaat gattttctat ctgacttatc
     4201 cgttttttca ggcccggggc ggagttctgc tttttctgtg tgtaaataat ttatttctta
     4261 taacgaaata gtattctatt cgttctgtgt gatttttcta tttattattt tttaaatgta
     4321 gtcttctcat tttcaattta taaaggcagc aaaatgttgt tcattccgca tatttcatta
     4381 aaacagttgt cgcttttaaa gtaatccatt tggagggttc acctttttgc tcaatatttt
     4441 ctatcatttt tccattgaat gtattttcca atatccaacg tttatcgttg ttttgttttg
     4501 ctttcagcag gtttatggca tcatccatac gattgtcgtg gcagttcaac ccagtgagta
     4561 tttccagtat ttccaatata tcggtctgat acatgagcgg aaatcccaac ttgagccatc
     4621 cgggtttcga tacttttgcc gtatcatgac tctttttata tatatgatga agcagaatat
     4681 attcgcagag ttcctttatt ttattttcaa tttcagtggt tcgcttttct acaggcactg
     4741 ccgacagggc tttcaatgat ttaaccacac ccatgtggca ggtgtgggta ccaaaacata
     4801 tatcaaaccg gtcatatggc cagccttgcg gtgggttggg aataccatca tcggcccgtt
     4861 ggtattttac tatccagtct attcctttca gtaccctttc atcatttgcg tatcccaact
     4921 gttgaaggct atacaccaga tttccggtta agcatggaat tacttcactc tgtcttcctc
     4981 cgtttttcag gtttccattg acggcgaatc catggcttgc cgcgtcctgt gaatattgca
     5041 ggatgaattc acaggctttt tttattcctt cattggcagg atcggcaccc aatccggcaa
     5101 ggattatcag ttgccatacc gttccagcat atttgtttga gtaaaatctc tcccggtttc
     5161 cccaaaagcc ttcttcgctt tgtttttcga gtatggcagg tactactcct gatttcatta
     5221 tttccatcct ggcttccgta acttcgtgct cctgttttcc taacagctgt ttcatggtaa
     5281 aataccgcac ggaaggatta tctttttcca ataaccattg cagggtttgt tcgtctataa
     5341 tttgttcaag cttcatttct attcctattt gtttgggtat aatatatttc caaaatccgg
     5401 acaaagttcc ggctgaaggc taaaagccat ttatctgccc caggaaacat cataatcata
     5461 cgcattcata tcgtcagtaa cctgagtcaa tcctgaacca tcagcattta taaccatgag
     5521 atgataaccg ccattctgct tattcagggc ggtaaacagg attttttttc catccggtga
     5581 ccagcacact gaccccaacc gctcataacc catccaggaa atactttcat tatacgtttt
     5641 tacccttacc acttgagtga ggtttgtgcc atcggggttc attgatttaa tagcaacagc
     5701 ctgttgatta cccagagaat ctctttccag cgtcacaaaa gctatttttg ttccatcagg
     5761 agagaaaacc ggagactcca gccattgatt atctgactga ggaactaatg tggtaacccc
     5821 ggattttcct acatacggtt caattttaag tataccagtt gtttggggag tacctttact
     5881 ggcacatact agttttccat cagtagaaat agaaaatcct ccggatggca taatgaccca
     5941 ataaggatca tccccataat taaatcgggt aagttccacc ttatccgttg cgtcttcttt
     6001 tgctgaaagc atatataacg gacctgcaac atttaaatga aataaaattt ttaaaccatc
     6061 cggtgtccat gttggatatc tttcatagcc cgaatgagag acccgaaagc tgttggttcc
     6121 atcaatatcc aggcagtaaa tattccaaat ggagttccag tctgctgagt ttaataatga
     6181 acaggctatt ttcgttccgt cgggagaaat gtatggccat ctggtcaaac tgtttagccg
     6241 aaatccgtat gactttttat tgtcgatatc tatcacataa aaaccggaac catccgaacc
     6301 attaacccgg tcaaatacaa ttttaccttc accaagatcc tgatacggga tattatttgt
     6361 taattgtttt agtgttgtaa cctcaaaagg attcttttta ttcaaatctt caacgtcatt
     6421 tttgcaacaa cttccaaaca acaataacat gctcgtaatt gcccatggaa aaatcagaat
     6481 gttgaatttt gttttcatga cttataccta ttatacctgc atcaacatta attggccagg
     6541 atttaatata tcttttctgt catgtttata acacaaattg ccgcttggtt tgccgggagg
     6601 tttgcgttac aggtgtgagg ttttcagtat tctgtttggc tttttatgcc aaatcagtta
     6661 ccaattttgc tgtcgaacca atagagtttt taaatttcaa cgaatgcccc ggattcgtct
     6721 gtttgtagtt atatgtaagc agccgttgct taggatattc tttctgaaat cagaactata
     6781 attgtttaat atataacggc tatggaacga attggttctg tttttgaatc aatattataa
     6841 tttgatttga catcaaatat ctctcttgct actttttttc ttttcaacgt ctttgtttat
     6901 tttctgtatt gtttccatcg gaattacata taattcatct gtttcgcaat tccaaacgtt
     6961 taaatacttt ttcgaaacaa cattgtgtct tttccatttt gcaaatttct catatagcat
     7021 caacgtacaa atgtctgtag cagtaataaa gtcaccggtt tcaggcaaat gtgaatgaat
     7081 tgtagcctca atttcatttc cgcctttttg tttatcgccg tagccaattg ggataatgtt
     7141 tttatgtaac cgctttgcat tggtcaggtt attattgttg tcgaaagtaa gcaaataatc
     7201 atttccgaaa ataaccacac cattttgttt aggtccagtc aaaacatata ctttcttttc
     7261 attatcgaag attacgggta taatattcaa atccgtatta ttgtattttc ggaataaagt
     7321 gtccgaattt attttggcga gtgcaatttt tcgtattgtg tacaggtcgt tttccggatt
     7381 tgaaaagtct ctttccgtca aatccatttt agccgatttt gtgctaaacg agctgtcgaa
     7441 tgagattgtg ccaataacct taggtttgtc tgccttcgaa aagaaaatac atttggatat
     7501 ttcgtcttgt gtgtaagaaa agtagccacc aacatttgcc ctgtctttgt aattggctaa
     7561 aaataagtct gtgccatacc aggaagccat ttccgacttg taaagccgtt tgccttcgtc
     7621 aacaataggt tgcgccttta tttttaagtc attctgccca aatgcattta aactggtata
     7681 agctaataat attaaaacta attttttcat ggtattactg tttttcttaa tgttccaact
     7741 gggtgtcggt taccattttt tctttatacg gaaactgctt ttcaaattct attaattcat
     7801 tgggctcagt cgtaaaagca ttgtcttcaa aaaaccggcc cgttatattt tctaatccat
     7861 tcgtttgtaa ctccagggcc ataaacggtt caaagttttc ataatatttt gttgtaatgc
     7921 catattcctg tgcatttcta aatccaaagc gatgataata gtccggattc ccaaagagaa
     7981 tcatagccgg ataaccggac tcttttgcca ctttaatgga ttcatttata agttctgacc
     8041 ccattccctg tttttgataa tcaggcaata ccgatacggg gcctacacat aaaacttcgt
     8101 gttccgtgtt ttgcacatcc accacttttg ctttggtaga tataatgtgc ccgataatct
     8161 cattttcaac cactgcaacc atatcgagtt ctgcaatata actattgccg tttctaacat
     8221 tatgcaaaac cagatgttca tcgcagcccg gtttatatac attccaaaat gcttcccgtg
     8281 taatgttttc agtaatcaga aaatccgctt tggttgtttt tcgaatacgt gttttcatgg
     8341 ttggtttaaa tgttttttag ctgttttaca atgatttgtg gcgtagttta ttgaacagac
     8401 cttatgtttt actccgaagt gtctttgagt cacttaagag tgtattgtta tcactcagaa
     8461 atgtctccga gtcagtcaag agtgtcttga tgttactccg aagtgtcttt gagtcactta
     8521 agagtgtctt gttatcactc agaagtgtct ccgagtcagt caagagtgtc ttgttgtcac
     8581 tccgaagtgt ctccgagtca gtcaagagtg ttttgttgtt actccgaagt gtctttgagt
     8641 cacttaagag cgttttgtca ccactccgaa gttccaacgc taacacatta ttcttaacgc
     8701 tcgctgaatc aagaccctgc aaaagggaat acggttcaac cgatgctttc tcgctgggtc
     8761 attccgaccg caggaagctt aagtattagc agtttgtttt ttttcttcgt ttttctcgaa
     8821 ttatgttctg gatatagcgt tgataaacat atattccaat cataatcaca aagagaaaag
     8881 tctcaattgt caaatagaat ttacctacat atttgtcttt tgtcacaaga ataaatcccc
     8941 aaattgcagg tattatataa taaaagatat ctagtttctt atttattatt cgctctatat
     9001 ttgtgtcaag ccagtcttgg tagttctcat ttttagggtc aatcacaatt aaccgcttaa
     9061 atctagcatt tgattcctta tatttctttt gtcggccgag tattactccg ttataaaaaa
     9121 gtgcacgttc gtagtagtac tcatattcct cagaattacc cttcaatttg tcgagtaata
     9181 taaaaatatg ttctaacacg aatgcagcat ctttaaagtg gtttttccgt tctattgctt
     9241 cacaatattt ctgtttgatt agaattgtgt cctcgattac ttctatatcg gtaattttct
     9301 catagtgatc gaaatataac ttattctctt cataaaattt catgatttcg gaagagtcgt
     9361 ttaaatctat ctcgtatgac ttttctagta cacttttcat ttttttcatt ttttttaggc
     9421 tataacgacc gaggctatgg gcatttg
//
LOCUS       DATDNM010000379         6071 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1329902, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000379 DATDNM010000000
VERSION     DATDNM010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6071
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1329902"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..904
                     /locus_tag="VI413_06365"
     CDS             <1..904
                     /locus_tag="VI413_06365"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914281.1"
                     /translation="VSADGGTILHCPGGSTTTYYTTDNGTNWSACSGVTLGSATPVAD
                     QVNANYFYIYHPSTGQMYRSTNKGVSFSVAATPGNSTANYPWESVLVRTVPGFEGHLW
                     IPRGRNGLKYSTNYGVSYTSIGRITYCKSIGIGKAKEGASYPTIFIWGTVANVTGLFY
                     STDKGATWTKMNDDAHQFGGAHLLIGDMNTFGRVYMGAGGGRGIVYWEPVSATNLIEI
                     QRSSNNLFIYPNPTKDGKFSIELPVTSNTANVNIFDNQGRLLFEKVFSNNGKLDIESR
                     LQKGIYIVKVASEGLNSTQKLIVQ"
     gene            1015..2907
                     /locus_tag="VI413_06370"
     CDS             1015..2907
                     /locus_tag="VI413_06370"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914282.1"
                     /translation="MKLKLLFALLVYVAVVNAQTTNCFLDDFVPKTATIPVSQVAVKT
                     TSTPAVTVTVAADTIGAISKYVFGNAIAAWMGNNTGNATFVKNTQALNPSLIRFPGGS
                     WGNIFFWNGRPTDLPDSIYDGASGKKVRFTSISGTNEWSTTTANYYTLRQQTGSQGLI
                     TVNYGYARYGLGNNPVAQAAHLAAQWVRYDKGRTKFWEIGNENPGPWEAGWMIDTKTN
                     KDGQPQIINGQLYGQHFKIFADSMRAAAKQVNAKIFIGALILHYDGATSWNSVDKTWN
                     AGVFSQVGDAADFYVMHNYFGNDNNANNLLSVALTEPAKNSSFIQQDIIDKKAYSKPI
                     ALTEYNMDGNKSGSTMVRSYVNGMQATILFNELIKNKFGLAARWLLASGDDGMFYQGS
                     ISSLLWQPRPDFYYAYYQQKFTGDHAISATSTNSNILAYASRFASGETGVVIVNKAKT
                     AQVVKINPKNILVGNKYYTYTLTGGVDNIDSSLYVSVNGVAPAGTQWGPRESLETIPA
                     NAYTTDNSIVVNCPRMSVQFVMLDAGTPAAINNLMEDKFEITNYPNPFSATSTIQFQT
                     DSAEPVSLEVFDQTGRKISTLINNALLSGKQTVNFNGSSLSAGVYFYKLRIGNYSTTR
                     KMILLK"
     gene            3115..5529
                     /locus_tag="VI413_06375"
     CDS             3115..5529
                     /locus_tag="VI413_06375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011965070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6914283.1"
                     /translation="MDKYYFRAKASFFLLFVCSISIFAQTNQKRTQLFDYDWKFFLGD
                     TSTAKEKDFNDVAWRNLDLPHDWSIEGKILPKNPTKGAGGYCPAGIGWYRKTFQTPAE
                     WKGKSVSVYFEGVYMNSEVFVNGKSLGVHPYGYTSFSYDLTSCLDYGKENTIAVRVDN
                     SKYLNSRWYSGSGIYRHVWMQVTDPVHVAHWGVAVTTPEVSPKKASVQVKTNVKNETS
                     NPQNIIVKTTLWNKNGKVAGSKSIKVLLSANEQKDVFQLIPVANPLLWSPESPDLYQA
                     QIQLINGSKIIDDSKTTFGIRTLKFSAEKGFQLNGKPVKINGGCVHHENGCLGSAAYD
                     RAEERKIELLKAGGFNMVRTSHNPPSEAFLDACDRLGLLVMDESFDCWKIGKNSNDYS
                     VYFNQWWERDLQAMVLRDRNHPSVFMWSIGNEIPERGTPDAVKTATMLIEALKKMDNT
                     RPVTSAIVENGKDWSIMDSLMAVHDVAGYNYHLFSAPADHQRVPSRMIVQTESYPKDA
                     FVNWKLTQENSYVLGDIVWTAIDYLGESGIGRYYYSGEVPGEHWENDFFPYHGAYCGD
                     IDLIGWRKPISHYRSMLYNDNQKLYLAVREPAPEPLEIKETWWTVYPTWESWTWPGFE
                     GKNIQVEIYSKYPKVRLYLNDKLIGEQVTTAEQQFKATFTLPYTAGVLKAVGVENGKE
                     VESTLLKTAGEAATIKLTADRTEMTANGQDLVFVTVELMDKNGVQQPNANNRLTFKVE
                     GEGTIVGVGNADIKDTDSYVGNTRRAWKGRAQVVIKSTHKAGDIKLTVSSSGIVDTGL
                     NIKSTK"
     gene            5533..>6071
                     /locus_tag="VI413_06380"
     CDS             5533..>6071
                     /locus_tag="VI413_06380"
                     /inference="COORDINATES: protein motif:HMM:NF013300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004560 - alpha-L-fucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEY6914284.1"
                     /translation="MKKQLLLLFGILILSFSVSAQYSMPSKMNWWYESRLGMFIHFGS
                     YSYLAQGEWAMASGWSKTDWQTKVTANFNPTNFNAGTIVRLAKKTGMKYLVITAKHHE
                     GFSMWDTKVASFKDVTGTKDYDLPGYTDFKTRDILKELKDSCDAVGVKFCLYYSIIDW
                     NHSSQTGYNFTKMNSFEART"
BASE COUNT         1871 a         1130 c         1362 g         1708 t
ORIGIN      
        1 tgtcagcgcc gatggaggca caatactgca ctgccccgga ggttccacaa cgacctacta
       61 tacaacagac aatggaacaa actggtctgc ttgttcgggt gtaacactgg ggtctgcaac
      121 ccctgtggct gatcaggtga atgccaatta cttttatatc tatcatcctt ccacgggcca
      181 gatgtacaga agcaccaata aaggtgtcag cttttcagta gctgctactc cgggcaattc
      241 aacggcgaat tatccgtggg aatctgtctt ggttcggaca gtgcctggtt ttgaaggaca
      301 tctttggatc cctcgtggta gaaatggact gaaatattcg accaattatg gagtatcata
      361 tacaagtatt ggaaggatta cgtattgtaa atcaattggc attggcaagg ctaaagaagg
      421 ggccagctac ccaaccattt tcatttgggg aacggtagcg aatgtcactg gactttttta
      481 ttcaacagat aagggtgcaa catggactaa aatgaacgat gatgctcatc agtttggcgg
      541 agcacattta ctcattggag atatgaatac tttcggaaga gtatatatgg gtgcaggtgg
      601 aggaagaggt attgtttact gggagcctgt gagtgcaact aatttgatag aaatccaaag
      661 gagctcgaac aatctgttta tttatcccaa tccaactaag gatggtaaat tttcgataga
      721 acttccggta acttcaaata ctgcaaatgt caacatattt gacaatcaag ggagattgct
      781 atttgaaaaa gttttttcca ataatggcaa gttagatata gaatccagac ttcaaaaagg
      841 gatttatatt gtaaaggtgg catcagaagg gctgaactca actcaaaaat taattgtgca
      901 atgagaaatt gatagataat ttgtaaaggt ctattctcgg aggttttact ctcagaatag
      961 acctttataa accaaaaaat agagtacaga atattatgta aaaacacaaa caaaatgaaa
     1021 ttaaaattac tatttgcctt attggtgtat gttgcggtag ttaatgccca aaccaccaat
     1081 tgttttctgg atgattttgt tcctaaaaca gctaccattc ctgtttctca agtagcagtt
     1141 aaaactacaa gtacaccagc cgtaaccgta actgttgcag ctgacaccat tggtgcaatt
     1201 tcaaaatatg tatttggaaa tgccatagcg gcctggatgg ggaataacac aggtaacgct
     1261 acctttgtga aaaataccca ggcgttgaat ccgtctttga tccgttttcc gggcggtagc
     1321 tggggtaata tctttttctg gaacggcaga ccaactgatc tgcccgattc aatttatgac
     1381 ggtgcatctg gcaaaaaggt aaggtttacc tccatttcag gaacgaatga atggtccact
     1441 actacggcaa actattacac attgcgccag caaaccggtt cacaagggct tattacagtt
     1501 aattacggtt atgcacgata cggattggga aacaaccccg ttgcacaggc tgcccatctg
     1561 gctgcgcaat gggtacgcta tgataaaggc cgtactaaat tttgggaaat tggtaatgaa
     1621 aatcctggtc cctgggaggc aggctggatg atagacacaa aaaccaataa ggacgggcaa
     1681 ccacagataa taaatggtca gctttacggt cagcatttta aaatttttgc cgactctatg
     1741 agggcagcag caaaacaagt gaatgctaaa attttcattg gtgcacttat attgcattat
     1801 gatggcgcaa caagctggaa ttcggtggat aaaacatgga acgccggggt ttttagccag
     1861 gtgggcgatg cagccgattt ttatgtaatg cataattatt ttggaaatga taacaatgcc
     1921 aacaatttat tgtcggtagc actaacagag ccggcaaaaa acagcagctt tattcagcag
     1981 gatataatcg ataaaaaagc ttattcaaag cccatagcgt tgactgagta taatatggat
     2041 ggtaataagt ctggttcaac catggtgcgt tcatatgtaa atggaatgca agcaactatc
     2101 ctgtttaatg agttgattaa gaataaattt gggttggcag cccgttggtt gcttgcctct
     2161 ggtgacgatg gtatgtttta tcagggaagc attagcagct tattgtggca gccacgtccg
     2221 gacttttatt atgcctatta tcagcagaag tttaccggcg accatgctat ttccgccact
     2281 tcaaccaact ccaatatttt ggcctatgct tcacggtttg cttctggtga aaccggggtt
     2341 gtgattgtaa acaaagcgaa aactgctcag gttgtaaaaa taaatccaaa gaatatcctt
     2401 gttggaaata agtattatac ttacaccctg accggtggtg ttgataatat cgattcttca
     2461 ttatatgtgt cagttaatgg ggttgctcct gcaggaactc aatggggtcc tcgcgaaagt
     2521 ctggaaacca tcccggctaa tgcctatact acagacaatt cgattgtagt gaattgcccc
     2581 agaatgtcgg ttcagtttgt tatgctggat gcaggaactc cagctgcaat taacaaccta
     2641 atggaagata aatttgagat taccaattat ccgaatccat tttcagccac ttcaaccatc
     2701 caatttcaaa cagattcagc agaacctgtt tctttagagg tttttgatca aacgggccgg
     2761 aaaatttcta ctctgataaa taatgcatta ctctcaggaa aacaaactgt aaacttcaac
     2821 ggaagttcat tgtcagctgg agtatatttc tataaattaa gaattggaaa ttattcaaca
     2881 acacggaaaa tgattctttt gaaataaaac aacttagtgc taataattgc tcgattgttt
     2941 tatagtacag aacaccttcg gggttgtaaa acctcgaagg ttacactttt ttaattcttt
     3001 aacgatacaa taggttgaaa aatggataag ttatacgatc aaattagttg aaatctggat
     3061 caaagagata taacttttgt tttttacttc ggtttaaata ttaataacaa tagaatggat
     3121 aaatattatt ttagagctaa agcatcattt tttctgctgt ttgtttgctc aatttcaatt
     3181 tttgcgcaaa ccaatcagaa aagaacgcaa ttgttcgatt acgactggaa attcttttta
     3241 ggagatactt ccacagcgaa agaaaaagac ttcaacgatg tcgcatggcg aaatttggat
     3301 ttgccccacg actggagcat tgaaggtaag atattgccca aaaacccgac caaaggagcc
     3361 ggtggctact gccctgcagg tattggctgg tatcgcaaaa cctttcagac tcctgctgaa
     3421 tggaagggca agtcagtatc tgtctatttt gaaggtgtat atatgaattc cgaagtattc
     3481 gtcaacggga aatcgttggg ggttcatcca tatggatata cttcattcag ctacgaccta
     3541 acttcttgtc ttgattatgg caaggaaaac acaattgctg tgcgcgttga taattcgaag
     3601 tacctgaata gccgttggta tagcgggtca ggcatttacc gccatgtgtg gatgcaggta
     3661 actgaccctg tacatgtagc acattgggga gtagcggtaa ctacacccga agttagcccg
     3721 aaaaaggcaa gcgtacaggt gaaaactaac gtgaaaaacg aaacctcaaa tcctcaaaat
     3781 attatcgtaa aaactacttt gtggaacaaa aacggaaaag ttgccggaag caaaagtata
     3841 aaggttctgc tttcggctaa tgagcagaaa gatgtttttc agcttattcc ggtggcaaat
     3901 cctttgctct ggtcgcccga atcacccgat ctgtatcagg cacagattca gttaataaat
     3961 ggcagtaaaa ttatcgacga ctctaaaacc acatttggta tccgtaccct gaaattcagt
     4021 gccgaaaaag gttttcaact caacgggaaa ccagttaaaa taaacggtgg atgtgttcac
     4081 catgaaaatg gctgcctggg ttctgctgct tacgaccgtg ccgaagagcg gaaaatcgaa
     4141 ttgctcaaag ctggtggttt taatatggta agaacttcgc ataatcctcc ttctgaagct
     4201 ttcttagatg catgtgaccg tttaggttta ttggtgatgg atgaatcgtt cgactgctgg
     4261 aagattggaa aaaattcaaa tgattattcg gtgtatttca accaatggtg ggagcgggat
     4321 ttacaggcca tggtgctacg cgatcgtaat cacccttcgg tttttatgtg gagcattgga
     4381 aacgaaattc ctgaacgtgg aacccctgac gctgtaaaaa ctgccacaat gcttattgaa
     4441 gcacttaaga agatggacaa tactcgtccg gtcacatctg caatagttga aaatggcaag
     4501 gactggtcta tcatggattc actgatggcg gtgcatgatg tagccggtta caactatcat
     4561 ttgttttctg ctccggctga tcatcaaaga gtgccatcgc gcatgattgt tcagactgaa
     4621 tcttatccca aagatgcctt tgtgaattgg aaactgacac aggaaaatag ttatgtgttg
     4681 ggcgacattg tttggacggc tatcgactat ttgggcgaat cgggcattgg tcgttattat
     4741 tattcgggcg aagtgcctgg cgagcactgg gaaaatgatt tttttcctta tcatggggct
     4801 tactgtggag atattgattt aatcggctgg cgaaagccca tttctcacta ccgtagcatg
     4861 ttgtacaatg acaatcagaa actctatctg gctgtacgcg agccggcacc cgaacccctc
     4921 gaaataaaag aaacatggtg gactgtttat cctacatggg aaagttggac ctggccggga
     4981 tttgaaggta aaaacattca ggtagaaatt tattcgaaat acccgaaagt aagactttac
     5041 ctcaacgata aactgattgg cgaacaggtt acaacggcag agcagcagtt taaagctacc
     5101 ttcacattgc catataccgc aggtgtacta aaagccgtag gagtagaaaa cggaaaagaa
     5161 gtagaatcaa cacttttgaa aaccgctggt gaagcggcaa ctatcaaatt gactgcagat
     5221 agaacagaaa tgactgccaa tggtcaggat ttggtatttg tgactgttga gctaatggat
     5281 aaaaacggag tgcagcaacc caatgccaac aatcgcttaa cctttaaagt ggaaggcgaa
     5341 ggaacgattg tcggggtcgg aaatgccgat ataaaagata ccgattcgta tgtgggcaat
     5401 acccgcagag catggaaagg tcgtgcacag gtggtgatta aaagtacaca caaagctggt
     5461 gatattaaat tgacagtgag ttcttcaggt attgtggata caggattgaa tattaaatca
     5521 actaaataaa aaatgaaaaa acaacttctt ttgctttttg ggatattgat tttatcgttc
     5581 agtgtttcag cgcagtattc aatgccgtcg aaaatgaatt ggtggtacga atctcgtttg
     5641 gggatgttca tccattttgg ttcatactct tatttggctc agggagaatg ggctatggca
     5701 tcaggttggt ctaaaactga ttggcaaacc aaggttacgg ccaattttaa tccgacaaat
     5761 ttcaatgcag gtactattgt ccgtttggct aaaaagaccg gtatgaaata cctggtaatc
     5821 acagccaagc atcacgaggg ttttagtatg tgggatacaa aggttgccag ttttaaagat
     5881 gttactggaa caaaggatta cgaccttccc gggtatacag attttaaaac aagagatatt
     5941 ttgaaagaac tcaaagattc ctgtgatgct gtgggagtga agttttgttt gtattattcc
     6001 ataatcgatt ggaatcactc atcgcaaaca ggttacaact ttactaaaat gaatagtttt
     6061 gaagcccgta c
//
LOCUS       DATDNM010000380         5224 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_155480, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000380 DATDNM010000000
VERSION     DATDNM010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5224
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155480"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VI413_06385"
     CDS             complement(<1..402)
                     /locus_tag="VI413_06385"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEY6914285.1"
                     /translation="MKRLLPVIKFEKISLNRKVLIGLGVVVLFLLVEIFVFVRHKQNK
                     IHDLPAILESGRLAVLTDSSRLGFSVKGDSVYGFQYEIVKAFADTLGVELVITEESNL
                     KTCMEGLKNGDYDIIASFIPVTTEWKKEALFT"
     gene            complement(442..2310)
                     /locus_tag="VI413_06390"
     CDS             complement(442..2310)
                     /locus_tag="VI413_06390"
                     /inference="COORDINATES: protein motif:HMM:NF025486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative porin"
                     /protein_id="HEY6914286.1"
                     /translation="MKNIVFCLLFLTVIATAFSQVPPDYRFVKTWHISEQFAVADSVP
                     VDTMHLNYQNDNLIDRFSIANSFNGNLGSPIQSKLYFDRPEKTDFIFADAYYPYLMNV
                     QHVTFYNTKTPFSNLNYINGGSLNRDEDNFKFLFTANANKKLNIGTTIDYLSSPGEYL
                     NMAVSRFSGSLFGSYDGKHYTAKGLLATNSMKNQESGGLENPADILTTLTPTVMQTNI
                     AGQSNFKQNVFYYNHQYSIGFERPVRINPDSVRMDYVPVTKFGHTFKYDDVRKRYYEN
                     SVDTSFYQNTYGVGSHTNDSTSLQTITNNLSVGMEEEFNKWMQFGLTAYLENEIQRYV
                     YTRENMLNLDFRSTTKVGGVLSKQRGQRFRYNVLGELGFLGYKAGDFLLEGKAGGYFK
                     IWKDSIALIANGFVRSDKPSWFMNNYESNHFRWQNDFANVYRTHAGGTFSMPTRSLSL
                     DVSVENLTQYIYFNSQALPAQFSGNIQVLAANLKKDFHFGKFALENNVVYQVSSNQDA
                     LALPNLVLYHNLYYDDKWFNVLSVQLGANVRYHTLYYAPAYMPATGQFYSQSTTKIGN
                     YPVVNVYANFHLKRTRFFIEYYHLNNKFMKGDYFSMPNYPINPAIVKTGISWNFYD"
     gene            2865..4199
                     /gene="gdhA"
                     /locus_tag="VI413_06395"
     CDS             2865..4199
                     /gene="gdhA"
                     /locus_tag="VI413_06395"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007217307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016639 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HEY6914287.1"
                     /translation="MNIEKLMQSLEAKHPGETEYLQAVREVLNTIEETYNEHPEFEKA
                     KIAERLVEPDRIFTFKVPWVDDRGEVQVNLGYRIQFNNAIGPYKGGLRFHPSVNLSIL
                     KFLGFEQIFKNALTTLPMGGAKGGSDFNPKGKSDAEVMRFCQAFMTELWRHIGPETDV
                     PAGDIGVGGREIGYLYGMYRKLARENTGVLTGKNLEFGGSLIRPEATGFGGLYFVKQM
                     LETAGMQIKGKTIAISGFGNVAWGAATKAAEMGAKVVSISGPDGYIYDENGISGEKID
                     YLLYLRATCNDIVSPYAEKFGAKFVPDRRPWELKVDIALPCATQNELNEEDAKLLINN
                     GVICVSEISNMGCTPEAIELFLKHKVMYGPGKAVNAGGVATSGLEMTQNAMHISWVAE
                     EVDARLQQIMREIHAQCVQNGREPDGYINYMKGANVAGFLKVAKAMLAQGVL"
     gene            4403..5146
                     /locus_tag="VI413_06400"
     CDS             4403..5146
                     /locus_tag="VI413_06400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HEY6914288.1"
                     /translation="MLDLLNQHRTIRKYTEQAIAPELLDQLLQTACRASNTGNMQAYS
                     VVVTTDPDIKQQLSPAHFNQPMIKQAPVVLTFCADYNLFSKWCEQRQAEPGYDNFQSF
                     MATAIDTLLVAQTFCIAAESFGLGICYLGTTTYNAQEIIEALKLPKLVVPVTTITVGY
                     PADIPEQTDRLPLEAVVHRETYKDFTSADIDRIYAKKENSDFYKQFIAENKKETLPQV
                     FTDVRYTKKNNEFFSEKFLEALKMQGFLN"
BASE COUNT         1711 a         1075 c          942 g         1496 t
ORIGIN      
        1 agtaaacaga gcctccttct tccattcggt tgttacgggt ataaaactgg caattatatc
       61 ataatcacca tttttcaaac cttccataca agttttcagg ttgctttctt ccgttataac
      121 aagttcaact cccagcgtat ctgcaaacgc ttttacaatc tcatactgaa acccataaac
      181 gctatcaccc tttactgaaa accctagacg actactatct gtaagcactg ccaatcggcc
      241 cgactccaga attgccggca aatcatgtat cttattttgt ttatgacgaa caaaaacaaa
      301 aatttcaacc agcaaaaata atactactac acccaaacca atcaacacct ttctattcag
      361 gctgattttt tcgaatttaa taacgggtaa cagtcttttc atggcataat tttgaataaa
      421 tttctcaatc agtaatttcc tttaatcgta gaaattccat gaaattccgg ttttcacaat
      481 ggccggattt attggataat ttggcataga gaaataatca cctttcataa atttattatt
      541 caaatgatag tattctatga aaaaccgtgt acgtttcaga tgaaaattag catatacgtt
      601 tacaaccggg taatttccga ttttagttgt cgattgcgaa taaaactgtc cggtggcagg
      661 catgtaagcc ggtgcataat atagtgtgtg gtaacgtaca ttcgccccga gctgaacact
      721 caacacattg aaccacttat catcgtaata cagattatgg tacaatacca gattcggaag
      781 tgccaaagcg tcctgattag aactaacctg ataaaccaca ttgttttcga gtgcgaattt
      841 tccaaaatga aaatcttttt tcagatttgc tgccagcacc tgaatattac ctgaaaattg
      901 ggctggaaga gcctgagaat taaaataaat atattgagtc agattctcaa cagacacatc
      961 caatgacaac gagcgtgttg gcattgaaaa tgtaccgcca gcatgtgtcc gatatacatt
     1021 cgcaaaatca ttttgccacc tgaaatgatt tgattcataa ttattcataa accacgatgg
     1081 tttatcacta cgcacaaagc cattggctat caaagcaatg ctatctttcc atattttaaa
     1141 ataaccaccg gctttacctt cgagcaggaa atctcccgct ttatatccca gaaaacctaa
     1201 ctcacccaac acattatatc ggaaacgctg cccacgttgc ttagataaaa cccctcccac
     1261 tttggttgtt gatctgaaat caagattcaa catattttcc cgggtgtaaa cataccgttg
     1321 aatctcattc tccagataag ctgtcaaccc gaattgcatc cacttgttga attcctcttc
     1381 catgcctact gacaggttat tagtaattgt ttgcaacgat gtagaatcgt tcgtgtgcga
     1441 tccaactccg taggtattct gataaaatga tgtatccaca ctattctcat agtaacgttt
     1501 ccgtacatca tcgtatttaa acgtatgccc aaacttcgtt acaggaacat aatccatacg
     1561 caccgaatcc ggatttatac gcacaggcct ctcaaaacca atgctatact ggtgattata
     1621 atagaaaaca ttctgtttga aattggattg gcctgcaata tttgtttgca taaccgtagg
     1681 cgtcaaagta gttaagatat ctgcaggatt ttcaagtccc ccactttcct gatttttcat
     1741 gctattcgtt gcaagcaacc cttttgctgt ataatgtttt ccatcataac taccaaataa
     1801 tgaacccgaa aagcgcgaaa cagccatatt cagatattcg cccggggaac tcaggtaatc
     1861 aatagtagta ccgatattca gtttcttgtt tgcatttgcg gtaaacaaaa acttaaaatt
     1921 atcctcatcc ctgttcagac ttccaccgtt aatgtaattc aggttgctaa atggtgtttt
     1981 agtattataa aacgtaacat gctgcacatt cattaaataa gggtagtatg catccgcaaa
     2041 aataaaatca gttttttccg gacggtcaaa atacaatttg gattggatag gagaacccag
     2101 gtttccatta aacgaattgg caatactgaa tctatctatc agattatcat tctgatagtt
     2161 aagatgcatc gtatccacag gaactgagtc cgccacagca aactgttcgg aaatatgcca
     2221 tgtctttaca aatcggtaat caggtggaac ctgagaaaac gcagttgcaa ttacagttaa
     2281 aaacaggaga cagaaaacta tatttttcac cgacgaaatt ttaatgctta aacaaaattc
     2341 gagattcatc acctcattat aaggcacttt tgaaagagca caaagataca aaaatttatt
     2401 gtcgtacccg aattaagaga cctaataaaa ccaaaaacgc ttttttgctt gttattaatt
     2461 caaaagaaac gagacaacaa cactatagaa atattaacat caatataagg ttgaatataa
     2521 aaacgataaa aaacaattca aaaattacat ttgataagat taagctagct atttattacg
     2581 atttgacaag cgttaaaata ctgttgtatt tttatttaaa aaacttgtca aaatgtttga
     2641 ttataacaaa taaaaagtct aaacttgcag tgtaatcaaa atgaaagaag tggatcagga
     2701 gcaataatat cacgctcaat attcagctgg atatatagtg aaatttagat ttatttcttt
     2761 caaaatgatt ataattttcc aacgtaacgc caatcattaa accggctcag gaatctgata
     2821 aatagctctt atctatccgg gtggtttaaa taaatctaat tgatatgaac attgaaaaac
     2881 tgatgcaatc gctcgaggca aaacaccctg gcgaaacaga gtatttacag gctgttcgcg
     2941 aagtattaaa cactattgaa gaaacttata acgaacatcc cgagtttgaa aaagcgaaaa
     3001 ttgccgaacg gctggttgag cccgatcgta ttttcacatt taaagttccg tgggttgacg
     3061 accgcggcga agttcaggta aacctggggt atcgtattca attcaacaat gccattggac
     3121 cgtacaaagg cggtttgcgc ttccaccctt cggtaaatct ctccatactg aaattcttag
     3181 gcttcgaaca aatattcaaa aatgcactga ctacgctacc tatgggtggt gctaaaggag
     3241 gttctgattt taacccgaaa ggaaaatcgg atgccgaggt aatgcgtttc tgccaggcgt
     3301 tcatgaccga actttggcgt catataggtc ctgaaaccga tgtccctgct ggtgacattg
     3361 gcgttggagg ccgtgaaata ggttatttgt acggcatgta ccgcaaactg gcgcgcgaaa
     3421 acaccggcgt tctaaccggg aaaaacctgg aattcggtgg atcacttatt cgtccggaag
     3481 caacaggttt tggcggatta tactttgtaa aacaaatgct tgaaactgcc ggaatgcaaa
     3541 tcaaaggcaa aacaattgct atttccggtt tcggtaatgt agcctggggt gcagctacca
     3601 aagctgccga aatgggtgcg aaagtagttt caatatctgg tcctgacggt tatatttacg
     3661 atgaaaatgg aatttcaggt gagaaaattg attacctact ctatctaaga gcaacctgca
     3721 atgatattgt ttcgccttat gccgaaaaat tcggagctaa attcgttccg gaccgccgtc
     3781 cgtgggaact aaaagtggat attgcattac cttgtgctac ccaaaacgaa ttgaacgaag
     3841 aagacgccaa actactgata aataacggtg taatatgcgt tagtgaaata tctaatatgg
     3901 gctgtactcc cgaagccatt gaactgtttt tgaaacataa agtcatgtat ggaccaggca
     3961 aagcggtaaa tgcaggtggt gttgcaactt ccggacttga aatgacccaa aacgccatgc
     4021 atatttcgtg ggtggccgaa gaagtagatg caaggttaca gcaaattatg cgtgagattc
     4081 atgcacaatg cgttcaaaac gggcgggaac cggatggtta tataaactac atgaaaggtg
     4141 ctaatgttgc cggattcctg aaagtggcaa aagccatgct ggctcaagga gtactataaa
     4201 ttagacggta atttgatttt tgctattcaa aaatcaatga aggagaaaat tctcggatac
     4261 attccgaaaa ttttctcctt ttcattttat cttgatttta ggacaagtcg cgacttgtca
     4321 ttacgggcaa aacccaaaac atttttttct atctttgcac ttccaaagaa caatcaactg
     4381 tcaattatca actaaataaa ctatgctcga cttactcaat cagcaccgca ccattcgaaa
     4441 atataccgaa caagccattg ctcccgaatt acttgaccaa ttattgcaaa ctgcttgccg
     4501 cgcttcaaat accggaaata tgcaggctta cagtgtagtt gttactacag acccggacat
     4561 caaacaacaa ctttctccgg cccattttaa tcaaccaatg attaaacaag ctcctgttgt
     4621 actgactttc tgtgccgatt acaatctttt tagcaaatgg tgcgaacaac ggcaagccga
     4681 gccgggatat gataattttc aatcatttat ggcaactgcc atagacacct tgctggttgc
     4741 gcaaacgttt tgtattgccg ctgaaagttt cggattgggc atttgttacc tgggaaccac
     4801 cacttacaat gcacaggaaa ttatcgaagc acttaaacta ccaaaacttg ttgttcccgt
     4861 tacaacaatt accgtaggct atccggctga tattcctgag caaactgacc gcttaccctt
     4921 ggaagcagtc gttcaccgcg aaacatacaa agactttact tctgcagata ttgaccgaat
     4981 ttatgccaaa aaagaaaaca gcgatttcta caaacaattt attgcagaaa acaagaaaga
     5041 aacattgcca caagtattta cagacgttcg ttacacgaaa aagaacaatg aattcttttc
     5101 tgagaaattt ttggaagcac tgaaaatgca gggatttttg aactaactga ttttataaaa
     5161 cacaaaagcg accggctcaa ttcagaaccg gtcgctttta tatttataag ctattgacta
     5221 aaaa
//
LOCUS       DATDNM010000381         3597 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_262446, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000381 DATDNM010000000
VERSION     DATDNM010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3597
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262446"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..278
                     /locus_tag="VI413_06405"
     CDS             <1..278
                     /locus_tag="VI413_06405"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HEY6914289.1"
                     /translation="AGDIICMNGLWAKECTDSIKFTVKKMQPSNERPLGEWNSMKIVS
                     KNKTLKVWVNGVLQNNITGLTASKGFIGFQNEGKPIEFRNLFLKSEK"
     gene            278..928
                     /locus_tag="VI413_06410"
     CDS             278..928
                     /locus_tag="VI413_06410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEY6914290.1"
                     /translation="MLFKGAIFDFNGTLFWDTAFHDQAFDIFLEKHNIQLTGEEKRVK
                     IHGKPNADIMRGIFGNHLTDDEIYDMAQEKEAIYRELCVNDLQFAPGAEELFNFLKTN
                     SIEMTIATSAGIENVSFYFEKMQLDRWFNLEKAAYDDGTFRGKPHPDVFLAAAEKLGL
                     QPEETVMFEDSVAGILAAENAGAGKIYIVNSYGENYSRFTHEIITDFAQVDRKLFV"
     gene            complement(925..2973)
                     /locus_tag="VI413_06415"
     CDS             complement(925..2973)
                     /locus_tag="VI413_06415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004321381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEY6914291.1"
                     /translation="MSPVSSRLRFFHLTLPFFGWLLLTFPLLAEDIDKPDSTKVQAIH
                     EVTITEKQRNSEIRSTAPLQILSSKQIEKLNVLQVSDAAKYFSGVTVKDYGGIGGLKT
                     ISVRSLGGNHTAVSYDGITLTDCQTGQIDLGRFSLENVDMLSLSSGQSDNIFQPARLF
                     ASASVLNIQTLSPRFTKNKKRNGKISMKAGSFGMLNPALLLEQKINPKFSATFSGEWL
                     LTDGKYPYRLQQGPYETNITTTEIRQNTDVKNLRLEAALYGNFAENENGYLKAYFYQS
                     ERGLPGATILYNAESSSKQRIWDNTFFTQAHYEKELTRKWVFQTNAKFNSGYLRYLDP
                     TYPDMDGKMENTYLQREYYVSTSVLFRAFENISFSASTDGAINTLDADLENFAYPTRF
                     SWLSTLAAKYVTNQMLATASVLSTVVDETVENGNAVDNYRHLSPYISLAIKPLSNQDF
                     RIRVFYKNIFRMPTFNDLYYSQVGSRDLQPEKTNQYNLGLTYAVSVQKWLPLLSFTAD
                     AYHNDVIEKIVAYPNKGYFWTILNYGKVTINGLDLTAETTFQPWKKIGVVLGANYTYQ
                     RALNVTNPTDRDYNNQIPYTPRVSGSGKAAIETPWINISYSLLWSGHRYAVNQNYAEN
                     RLPAYADHSISVSRSFKIKKYLIYANLEVLNLLNDNYQVVRWFPMPGRSFRGTVSVKF
                     "
     gene            3222..>3597
                     /locus_tag="VI413_06420"
     CDS             3222..>3597
                     /locus_tag="VI413_06420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEY6914292.1"
                     /translation="MGSFGKFIGGGLGFVLGGPIGALVGFALGSMFDSSTVNVSTDST
                     IHNRTAEGDFKMSLLVLVACIMKADGKVDKAELAVVKKFLVANFGEQGALDALQILKK
                     LLDQPINETEVATQIGMYMNYSS"
BASE COUNT         1031 a          686 c          798 g         1082 t
ORIGIN      
        1 cagcgggtga tattatttgt atgaacggcc tttgggcaaa agaatgtacc gattcgataa
       61 aattcaccgt aaaaaaaatg cagccttcga atgagagacc gcttggtgaa tggaactcga
      121 tgaaaattgt cagcaaaaat aaaacgctta aagtttgggt aaatggtgtt ctgcagaata
      181 acatcaccgg actcactgcc tcaaaaggtt tcataggttt ccagaatgaa ggaaaaccaa
      241 tagagttcag gaatttattt ttaaaaagtg agaaataatg ttatttaaag gagctatttt
      301 tgatttcaac ggaacccttt tctgggatac tgctttccat gatcaggcat tcgatatttt
      361 tttggaaaaa cataatatcc aacttaccgg tgaggaaaaa cgagtgaaaa ttcatggaaa
      421 accgaatgcc gatattatgc ggggcatttt cggcaatcat ctcaccgacg atgaaattta
      481 tgacatggcc caggaaaagg aagccattta tcgtgaactt tgtgttaacg atttgcaatt
      541 cgctccgggg gctgaagaat tattcaattt tctgaagact aacagtatag aaatgacaat
      601 tgctacttcg gccggcattg agaatgtgag tttttacttc gaaaaaatgc agctcgaccg
      661 ttggtttaac cttgaaaaag ctgcttatga cgatggaact tttcgcggaa aaccgcaccc
      721 ggatgtgttt ttggccgcgg ctgaaaagct cggattgcaa cctgaagaaa cggtgatgtt
      781 cgaagattct gttgccggaa ttctggctgc agaaaatgca ggagcaggta aaatttatat
      841 cgtgaattcg tatggcgaaa attatagccg ttttacccac gaaataatta cagattttgc
      901 tcaggtagac aggaagcttt ttgtctaaaa cttcaccgaa actgttcctc tgaacgatct
      961 gcccggcatt ggaaaccagc gtacaacctg ataattatca ttaagtaaat tcaaaacttc
     1021 cagattggcg taaatcaggt attttttgat tttaaaactc ctgctcactg aaatactgtg
     1081 atcggcataa gccggcagcc ggttttcggc atagttctga ttcactgcat agcggtgtcc
     1141 cgaccacaaa agcgaatacg aaatattgat ccacggtgtt tcaatggctg ccttcccaga
     1201 gcctgaaaca cgaggcgtat atggaatttg attgttgtaa tccctgtccg tcgggttggt
     1261 tacattcaat gcccgctggt aggtgtaatt ggcaccaagc actacgccga tttttttcca
     1321 gggttgaaag gttgtttcgg ctgtcaaatc aagtccgttg attgtcactt tcccataatt
     1381 cagaatggtc cagaagtaac ctttgttagg gtaagctaca attttttcaa tcacatcgtt
     1441 gtgatatgca tcggcagtga acgacagcag cgggagccat ttttgaaccg aaactgcata
     1501 agtcaatcca aggttgtatt gattcgtttt ttcgggttgc aaatccctgc ttcctacctg
     1561 cgaataatac aggtcattga aagtaggcat gcggaaaata tttttgtaaa aaacacgaat
     1621 acgaaaatcc tgatttgaaa ggggtttgat tgccaggctg atatatggag ataaatgtct
     1681 gtagttatca actgcatttc cattttccac tgtttcgtca acaacggtgg aaagcacgct
     1741 tgcagttgct aacatctgat tagtaacgta ttttgcggcc agtgtagaaa gccatgagaa
     1801 tcgggtggga taggcaaagt tttccaaatc cgcatcgagt gtatttatgg ctccatctgt
     1861 cgaagccgaa aacgaaatat tttcaaacgc tctgaaaaga accgaagtcg agacgtaata
     1921 ctcccgttgc aaataggtat tctccatttt tccgtccatg tccggataag ttggatccag
     1981 atagcgcaaa tagccgctgt tgaatttggc attggtttga aaaacccatt ttcgggtaag
     2041 ctccttttcg taatgtgcct gagtgaaaaa tgtattgtcc caaatccgtt gtttggatga
     2101 gctttccgca ttgtacaaaa tggttgcacc cgggagtcca cgctccgatt ggtagaaata
     2161 agccttgaga tacccgtttt cattttctgc aaaattaccg tataaggcag cttctagccg
     2221 aaggtttttt acatcggtat tttggcggat ttcagttgtg gtaatgtttg tttcgtaagg
     2281 gccttgctgc agtctatacg gatattttcc gtcagttaaa agccattcgc cgctgaaagt
     2341 tgctgagaat tttggattga ttttctgttc caacaaaaga gccggattca acatgccaaa
     2401 tgatccggct ttcatcgaaa tttttccgtt ccgtttttta tttttagtaa aacgcggact
     2461 caatgtttgg atgttcagca cagaagcaga tgcaaaaagc cgcgccggtt gaaagatatt
     2521 atcgctttgg ccgctgctga gcgacaacat atctacgttt tcaagcgaga aacggcctag
     2581 gtcaatttgc ccggtttggc aatcagtcaa tgtaatcccg tcgtaactca cagcggtatg
     2641 atttcctccc aaactacgaa cagaaatggt tttcaggcca ccaatgccac cgtagtcttt
     2701 tactgttacg cccgagaaat actttgccgc atccgaaact tgcagcacat tcagcttttc
     2761 aatttgtttt gacgaaagga tttggagtgg agctgtggag cggatttctg aatttcgttg
     2821 tttctcggtg attgtaactt catgaatggc ctgaactttt gtggaatcag gcttgtcaat
     2881 gtcttctgcc aaaagcggaa acgtcaaaag caaccacccg aaaaacggca gtgtaagatg
     2941 gaaaaatcgt aatcggcttg aaacgggtga catttaattg aatttgtcct tgaaatgcaa
     3001 tttatatttt atacattaaa aacggttgca aagatacgat tttcagctta gaattgatat
     3061 ttaactattt cgtcctctgt ttttcggtta caattgattc ccgggtcatt gaaataagca
     3121 atgttttatt tcgaatattt aatttgacat aacggcatat taataattgg agcatttttt
     3181 cttatctttg tggccctaaa atcatttcaa ataaagtctt tatgggaagt tttggaaagt
     3241 ttatcggagg aggtcttggg tttgtgcttg gcggtccaat tggtgcatta gtcggttttg
     3301 cgcttggatc tatgttcgac agttcaacgg ttaatgtttc tacagattca acaatacata
     3361 accgcactgc agaaggcgat ttcaaaatga gtttgctcgt tttggttgcc tgtataatga
     3421 aagccgacgg aaaagttgat aaagcggagt tggcagtagt aaaaaagttt ctggttgcca
     3481 actttggcga gcaaggcgcc ctggatgcat tgcaaatatt gaaaaagctt cttgaccagc
     3541 ctatcaatga aacagaagtt gcaacgcaaa taggtatgta catgaattat tcctcca
//
LOCUS       DATDNM010000382         2647 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_48227, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000382 DATDNM010000000
VERSION     DATDNM010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48227"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1589)
                     /locus_tag="VI413_06425"
     CDS             complement(<1..1589)
                     /locus_tag="VI413_06425"
                     /inference="COORDINATES: protein motif:HMM:NF025563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RICIN domain-containing protein"
                     /protein_id="HEY6914293.1"
                     /translation="MKITPHYSKVILSLFFLFAINLSIIAQSGIYVGGHFRRDRTVTV
                     PTLKASGFTYVILFNIQVEANGDLTTDGEKICSNGLYVFGTTQPNYVADVTSLKTGMT
                     SVRRVESCIGGWGSTSYNNIKALVNAQETGSTSILYRNFQALKNAIPSIDAINNDDEA
                     GYDVTTATAFHVMLFDLGFKTTLAPYMNKSFWQSLATNINNLRPGAVDRIDLQCYDGG
                     ASNNPKDWVINNITMHAGMLHFNPSTTITSTMSAWKSNSTVKGGFLWVYNANDFNLKT
                     YAGAINSVFGGGEVVNMDKMKPYMTAFSEANYQGTAVNFEKGDYNIAAITAQGLLDKS
                     ISSIKLAPGFKAKLYKQNNYSGTPVTVTENTASLLDLACNDSISSLSVRPNGDITLGG
                     KVYFLKNRKTGLFMGVEGQSILTGANIQQQAFTGNEDQKWGFAHVADGVYRISNKHSV
                     ISIQVRASSTDDNAVCEQKLYTGLDNQKMIAQKSTTSSYYKIIPYHSTKYLKSETDQI
                     AANIVQGGLNSDLETDWEIILS"
     gene            2026..2568
                     /locus_tag="VI413_06430"
     CDS             2026..2568
                     /locus_tag="VI413_06430"
                     /inference="COORDINATES: protein motif:HMM:NF013426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HEY6914294.1"
                     /translation="METLTNSIVPEIVLDEIVEKYKGKPGMLLSTLEEVQEKNPLKFL
                     PGETLSVVSQKLNIPYTQVYSVATFYSFFNLKPQGKHSIIVCRGTACHTKGSKALLDE
                     VGPILGFKRAEDESEASFTTPDNEFTIKTVACFGQCAQSPVVAVDGIIHSNVNSQKLI
                     KILTKVKGRQPLAGGKNKID"
BASE COUNT          849 a          539 c          462 g          797 t
ORIGIN      
        1 gataaaataa tttcccaatc tgtttctaaa tcagagttta aaccaccttg cactatattg
       61 gcagcaattt gatctgtttc tgatttaagg tatttcgtac tatgataagg tataatttta
      121 taatatgaag atgtagtact tttctgagca atcattttct gattatccaa tcctgtatac
      181 aatttttgtt cacaaacagc attgtcatct gtactgcttg ccctgacctg aatagatata
      241 acactgtgtt tgtttgaaat ccgataaacg ccatcggcaa catgagcaaa gccccatttt
      301 tgatcttcat ttccggtaaa tgcctgctgt tggatgttag cacccgttaa aatactttgc
      361 ccttcaactc ccataaaaag tccggttttc cggtttttta gaaaataaac ttttcctccg
      421 agcgtgatat cgccgtttgg acgtaccgac aaagaactga ttgaatcatt gcaggctaga
      481 tcaagcaaac tagcagtatt ttcagtaaca gtcacaggtg ttcctgaata attgttttgt
      541 ttataaagtt tcgctttaaa acctggtgcc agtttaatag acgaaatcga cttatccaaa
      601 agtccctgtg cggtaatagc agcaatatta tagtcgccct tttcaaagtt cacagctgtc
      661 ccctgataat tagcttcaga aaaggccgtc atataaggtt tcattttatc catatttaca
      721 acttcgcctc cgccaaaaac actgttaata gcacctgcat aggttttcag attaaaatca
      781 tttgcattat aaacccacag aaatccacct ttcacggttg aattactttt ccaagccgac
      841 atggttgaag taatagtggt tgagggattg aaatgaagca ttcctgcatg catggtgatg
      901 ttattgataa cccaatcttt gggattgttt gaagctccac catcgtagca ttgcaaatca
      961 atccgatcca ctgctcctgg cctcagatta ttgatgttag ttgccagact ctgccaaaaa
     1021 ctcttattca tataaggagc aagcgtggtt ttaaaaccta aatcgaacaa cattacatga
     1081 aaagccgtag ctgttgtaac atcgtagcca gcctcatcat cgttatttat agcatctatg
     1141 gaaggaatcg catttttaag cgcttgaaag tttctgtaaa gaatactcgt tgaacccgtt
     1201 tcctgagcat ttacaagcgc tttaatgtta ttatacgaag tagaacccca accgccgata
     1261 caactttcca cgcgacggac tgaagtcatt cctgtcttca aagaggtaac atctgccacg
     1321 taattaggct gtgtcgttcc aaatacatac aacccattgg agcaaatttt ttcaccatca
     1381 gtggtcaggt ctccattagc ctccacttga atattgaata aaataacata tgtaaaaccg
     1441 gaagctttaa gtgtcgggac cgttactgtc ctgtcccggc ggaaatgccc tcccacgtaa
     1501 atacccgatt gagcaatgat agacaaatta atagcaaata aaaaaaataa ggataaaatt
     1561 accttggaat agtgcggtgt gatcttcata aataagtaat tgtggattaa aaaaggggct
     1621 tttttcaaca tgcagcctaa gctatcagct tattttagat attcgaccgc ttttcgctgc
     1681 aaaaataaag taaaaaaatg gaaagtgtac attttacaac atcatttttc atcacatata
     1741 atatcgagta gaactcgcct gcatttcgta aaaagaaacg gttcgtttta ccagacaaag
     1801 cttataaatt caagttatta gcaaaatatg aggttccagt cctgtacaaa aacaattttt
     1861 aaactttatt ctaaaaataa atgcaattaa agaaatattt ctgcaataat acattacctt
     1921 tgtagcagga atagtttcat caagtactac ctcaaaacaa gcttgttggg ctactctttt
     1981 tcagaatttg tttggatata tataactaat tttaaaaata tagttatgga aacgcttact
     2041 aattctatcg tccctgaaat agttctcgat gaaatagttg agaagtacaa aggcaagcct
     2101 ggcatgttac tttccaccct ggaagaagtg caggaaaaga atcctttgaa attcctcccg
     2161 ggtgaaaccc tctcggtggt atcacaaaag ctgaacattc cgtatacaca agtgtacagc
     2221 gtagccacat tttattcatt tttcaatcta aaaccacaag gaaaacattc cattattgtt
     2281 tgccggggaa cggcgtgcca tactaaaggt tccaaagcat tgctcgatga agtcggtcct
     2341 attctggggt ttaaacgagc agaagacgaa tcggaagcat cattcaccac ccccgacaat
     2401 gaatttacga tcaaaacggt agcctgtttt ggccagtgtg cacaatctcc ggtagtggca
     2461 gtagatggca ttatccacag caatgtcaat tctcaaaagt tgataaaaat acttacaaaa
     2521 gttaaaggcc gtcagccatt agcgggtggt aaaaataaaa tcgattgatt tccagctctc
     2581 ccaatatacc ttatcatata actttacttt agtctgagaa ccatcgacac tagactaaaa
     2641 acaaaag
//
LOCUS       DATDNM010000383         2131 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1330101, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000383 DATDNM010000000
VERSION     DATDNM010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1330101"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..502)
                     /locus_tag="VI413_06435"
     CDS             complement(155..502)
                     /locus_tag="VI413_06435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005801674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEY6914295.1"
                     /translation="MEKIREVIAYKNYFVDFLTRQPLKVQNKIFKIIEAIETLERIPT
                     TYLKLLAGTNGLYEARIQLGTDIWRVFCFFDKGKLVILLNGFQKKTQKTPKKEIEKAI
                     ILMKEYYENRKEQ"
     gene            832..2016
                     /locus_tag="VI413_06440"
     CDS             832..2016
                     /locus_tag="VI413_06440"
                     /inference="COORDINATES: protein motif:HMM:NF033592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEY6914296.1"
                     /translation="MIINAKNNISACDLLSLIPAEEINRIAQKTNVNHCIKVLDGESV
                     LYLLLYALVECQRNSLRTMQDIFNSAAFKFLFNLPAGKTVKYNSISERLSVIDPEFFK
                     QAYELIFDIFTEHYSEQEIEDRHLVRVDSTMVAEAANKLKKGMKIGSKTTKKQIKYTL
                     AFDGNFPCMGEIFSDRVNLSENTTIPEVIYKYAQKNKSAVFVFDRGVDKREVFQTLSQ
                     NETHFLTRIKADSRYKYKVVEELEKGTARKTGKLELESDLKVQIGIPEKKAFYDNHYR
                     LIIANNPQTGVVYHFLTNIFDLTAQEIMLLYKKRWDIEVFFRFLKQELNLSHITSTSE
                     NGMQVILYMTMITSMLVLIYKRLNQVGYKTAVRRIAIELNEYIITLIVRYCGGDPSLV
                     FR"
BASE COUNT          687 a          383 c          403 g          658 t
ORIGIN      
        1 taattcctct tgggtcatat ggcgcgattc tcttgccttt tttaacaaaa gtccgatttt
       61 aaaagattct gcttctctct caagagtgtc acgtctctct gtaccttttt ctccgtaaac
      121 ctgatctttg atttgtgacc aggttgtaat gtccttattg ttcttttctg ttttcataat
      181 actctttcat taaaatgatg gctttctcaa tttctttttt tggcgttttc tgtgtctttt
      241 tctgaaatcc atttaaaagg atgaccaatt ttcctttatc gaagaaacag aaaacacgcc
      301 aaatatccgt tcctagttga attctggctt cgtagagacc atttgtccct gctagaagct
      361 ttaaataagt tgttggaatt ctctccaaag tctcgatggc ttcaatgatt ttgaagattt
      421 tgttttgaac ctttaagggt tgcctggtca agaaatctac aaaatagttt ttgtaggcta
      481 ttacttctcg aattttctcc ataggtcatt gaaataaagt caaaggtaac tttaaagtta
      541 caaatatcca aatcaatatt gataggtcgg agaaatttta ttactgctat agcgcttaaa
      601 ctacctgcag aggcagattg cggtagattt cactatgagc ttaaaagtag cctaagcaaa
      661 aagatacacc ccgaaaacca ccccgagtac acccgctggg gaggatttac aattaggagt
      721 gttcggaaga ttttagttta tatataacta tttgaattaa aaacacatat gaatttttag
      781 tcattttaga atctttgttg ttattgatat ttagacaata atactaataa aatgataatc
      841 aatgctaaaa acaacatatc tgcctgtgat ctgctttcat taatcccagc agaagaaatc
      901 aacagaattg cacaaaagac caatgttaat cattgtataa aagtacttga cggggaaagt
      961 gttttatatc tgctgctgta tgccttggtg gaatgccagc gcaacagtct tcgcaccatg
     1021 caggacattt ttaacagtgc cgcttttaaa ttccttttta accttcctgc cggtaaaacg
     1081 gttaagtata attcaatatc agaaaggctt tcggtaatcg accctgaatt ctttaaacag
     1141 gcctacgagc tgatttttga tattttcact gaacattaca gtgagcagga gatagaagac
     1201 aggcacctgg tgcgggtgga ttccaccatg gttgctgaag ctgccaataa gttgaaaaag
     1261 ggcatgaaga ttggatccaa aaccaccaaa aagcagatta aatacacact ggcttttgat
     1321 ggtaattttc cctgtatggg agaaatattt agcgacagag tgaatttgtc ggaaaataca
     1381 accatacctg aggttatata taaatatgcc cagaaaaata aatcggctgt atttgttttt
     1441 gaccgtgggg ttgataaaag agaagtattt caaacactga gccaaaatga gacacatttt
     1501 ctaacaagga tcaaggctga ttcaagatat aaatacaagg ttgtagaaga acttgaaaaa
     1561 ggaacagcca gaaaaacagg caagcttgaa ttggagagtg atttaaaggt tcagattgga
     1621 atacctgaaa agaaagcatt ttatgacaac cattaccggc tgattattgc caacaacccg
     1681 caaaccgggg tggtatatca ttttctgacc aacatctttg atttaactgc ccaggaaata
     1741 atgcttcttt acaagaaacg atgggatatt gaagtatttt ttcgttttct taaacaggag
     1801 ctcaacttaa gccatatcac atcaactagt gaaaacggta tgcaggtgat cctgtatatg
     1861 acaatgataa cttccatgct ggtgctcatt tataaacggt taaaccaggt aggctataaa
     1921 acagcagtaa gaagaatagc cattgaactg aatgagtata taataacact catcgtcagg
     1981 tattgcggag gtgatccaag cttggtattc cgttgaaaat aaactaaatg caagttcttt
     2041 gaaatcttcc gaacactcct aattgcaaat ctgcaccagc acgagagccg ctctgaccat
     2101 gggatatgag ggatttaagc aaaaatgcat t
//
LOCUS       DATDNM010000384         4808 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_688710, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000384 DATDNM010000000
VERSION     DATDNM010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4808
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_688710"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            974..2068
                     /locus_tag="VI413_06445"
     CDS             974..2068
                     /locus_tag="VI413_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6914297.1"
                     /translation="MKNKNIAYVFLILLFCACQKPNTNSGTVVNVQEKTYTNPILPLG
                     NKPWAIFQNGYYYYTQETGGNVVIWKTKDLTDLRNAPHKAVWLPNDPKSSHDLWAPEI
                     HYIDGKWYIYYEADDGNSDNHQIYVAENTAKDPFEGKFVFKGRISTDKDNNWGIHPNV
                     VQHKGSLYMTWSGWQSRRVRVETQCIYIAKMKNPWTLASDRVLLSKPEYEWERQWINP
                     DGSKTAYTIYVNEAPQFFHSKNNDKIYIFYSASGLWTPFYAIGKLTADANSDLLNPAS
                     WKKSERPVFKQSPQDSIFSTGNCCFVPSPDGKEYYMLYHARKIPNEPPGALDSRSPRL
                     QKIEWTEDGTPYLGVPVPSSVQLPKPSGTN"
     gene            2221..4737
                     /locus_tag="VI413_06450"
     CDS             2221..4737
                     /locus_tag="VI413_06450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4965 domain-containing protein"
                     /protein_id="HEY6914298.1"
                     /translation="MKKPLLLLMLSLSMLAVNAKKPAVPVAEKPLRAPAVPLITSDPY
                     FSLWSASDQLTETATTHWTGKTQSLIGALRVDGKTYRFMGQEEASYSAIVPSGEWDAK
                     ITEKQPAANWFDVNFADAAWKTGKGSFGNNDAPQRVSNWDSKDIWIRRTFDLKENISA
                     ESLFLEYSHDDIFELYINGIKVVETGYTWRNNVHLELDAKIKSTLKPGKNIIAAHCHN
                     EVGGAFVDFGLMKKNNVGAGFSTKAIQKSAVVLPTNSVYSFICGPVQLDLTFTAPLLL
                     EDLDLVSTPINYISYKTTSLDKKSHDVQIYFEATPQIAVNNDKQPVKFDKLTKNGFTY
                     VKTGTINQPILGQIGDDLRIDWGYLYLGGKLSANENVGLSEYFDAKKSFVESGKLPAD
                     ASPKSFSSNMKEKMTVLAYTNNLGKVEKEAVNGHVMIGYDDIYSIEYMYESLMPYWKH
                     DGKVNIFQAFEKAESSYSSLMARCNAFDKKMMQDAENAGGKQYAELCAMGYRQAIAAH
                     KLVQDKEGNLLFLSKENNSNGCINTVDVTYPSAPLFLLYNPDLLKGMLTPIFQYSESG
                     RWTKPFPAHDLGTYPIANGQLYGGDMPVEEGGNMLLLTTAIAYAEGNAEYAHKHWDVL
                     TIWADYLIQAGLDPENQLCTDDFAGHFAHNTNLSIKAILGIAGYGKLAGMLGKDDIAK
                     KYISTAKEMAAKWMSMANDGDHYRLTFDKPGTWSQKYNIVWDKVLDMGIFPKEVMATE
                     ISYYLTKQNKFGLPLDSRKTYSKSDWILWTACLANNPEDFKKIVAPVYTYVNETQSRV
                     PLCDWHETTDGSAVGFKARSVVGGYFMKMLENKMKATSAK"
BASE COUNT         1653 a          909 c          878 g         1368 t
ORIGIN      
        1 ttcaaagcag gattacattt gcttttctaa agaatctggt ccataatttt atttactcac
       61 caaaaaatac aataataatc cgttttgaaa acggtgtttt ggttaaggca aagataaggg
      121 gttttatttc caagtatcaa acacatatta ttcaaaaaag gatacattct gaccaaaagg
      181 cccattttgc tcattcagca aggcatatca gcaatcaatt atttcactaa tatacagaca
      241 tttaaaacat aaatgacaat acgataaata taccaaacag ccaaaaataa gcaaactaaa
      301 ccttctgatt tatcaatacc attgccagat ataaaatgta aacaattgca gtctacttta
      361 tatgtaatac acaccctctt cgcagcccct atcaacaaga agtcaatcta tcaaagttaa
      421 agacagcttg aattgacgaa cgtcacccgt atttcaactc atttttagac aataaaaaaa
      481 gttaatactt cattaatatg attactgcgt acaaatccac cccttaagcg ccactcaatt
      541 tttatttcag gagtaacgtt ttattactgt tgatttttga aaaaccgaag attatattcc
      601 tttaaaaatt gatttcgcaa aagacattat atattgttat ccgattcttt acagtaatca
      661 caaatacaca ccatataaaa agagtgaaaa agcgaatatt atagatgtaa actgccgaaa
      721 acgccgacta ttcgctgaca gtccgttttt taatctgata gatataactt tcgatgaata
      781 ataggcttat ttatcattta gctgtttccc aatccaatct ggtcaatttg tattcaaatt
      841 tgaatagctt tttttcttgt gtttataaaa aaagaagttt ctttgcattg aaaattctgt
      901 gaaaagattt tgcatgtatc aaaatcgcac agctgttttt catatcgaaa aataaataca
      961 catgaaaact gtaatgaaaa acaaaaacat tgcttatgtt tttttgatac ttcttttttg
     1021 cgcttgccaa aagccaaata cgaattcggg aacagtggta aatgttcagg aaaaaacata
     1081 cactaatcct atattaccac ttggtaataa accatgggct attttccaaa atggttatta
     1141 ttactacaca caagaaaccg gaggcaatgt tgtgatatgg aaaacaaaag atctgaccga
     1201 tttacgaaat gctccgcata aagctgtgtg gctaccgaac gatcctaaat catcacatga
     1261 cttgtgggct ccggaaatac attacataga tggaaaatgg tatatatact acgaagccga
     1321 cgatggaaac agtgataatc atcagattta tgttgcagaa aatacggcaa aagatccttt
     1381 cgaaggaaag tttgttttca aaggaagaat cagtactgat aaagataaca attggggaat
     1441 tcatccaaat gtagtgcaac ataagggaag tttatatatg acctggtcag gttggcaatc
     1501 acgtcgtgta agagtagaaa ctcaatgcat ctacattgct aaaatgaaaa acccatggac
     1561 actggcatcc gatcgtgttc ttctctctaa accagagtac gagtgggaac gacaatggat
     1621 aaatcctgac ggaagcaaaa cggcctatac aatttatgta aacgaagctc cacagttttt
     1681 ccacagtaaa aacaacgata aaatttacat attttatagt gcaagcggct tatggacacc
     1741 tttttatgcc attggaaaac ttaccgccga tgctaatagt gatttgctga atcccgcatc
     1801 gtggaagaag tcggaaaggc cggtattcaa acaatcacca caggatagta tcttttcaac
     1861 cggaaattgc tgttttgttc cttcgccgga tggtaaagag tactatatgc tttatcatgc
     1921 ccgtaaaata ccgaacgagc cacccggagc actggattcc cgatcgccac gattacaaaa
     1981 aattgaatgg acagaagacg ggactcctta tttaggtgta cctgttccca gctcggttca
     2041 attaccaaag ccttcgggaa ccaattaaag aaaacaatta attctgaaat cccataactg
     2101 tttttaaatc tgtcgaaacg atagaccaaa aatggattat ttagagctta aaatactctg
     2161 aacagggatt ttattatcat attaaaactc aaactaataa ttaaaattaa gaacatttgt
     2221 atgaaaaaac cattgttgtt gttgatgtta tcactatcaa tgttggcagt aaatgccaag
     2281 aaacctgcag ttcccgtcgc ggagaaacct ctccgtgcgc ctgcagttcc cctgatcact
     2341 tctgatccgt atttcagttt atggtcggct tccgatcagt taactgaaac agccactacg
     2401 cactggaccg gaaaaaccca atctttgatc ggcgctttac gtgttgatgg aaaaacctat
     2461 cgtttcatgg gacaggaaga agcttcttat agcgcaatcg tacctagtgg cgaatgggac
     2521 gcaaaaatta ccgaaaaaca acctgctgct aactggtttg acgtaaactt tgctgatgca
     2581 gcctggaaaa caggcaaagg ttcgtttgga aataacgacg ctccacaacg cgtatctaac
     2641 tgggacagta aagatatctg gattcgccgc acatttgatt tgaaagaaaa tatcagcgca
     2701 gaatcactat ttctggaata ttcacacgat gatattttcg agttgtatat caacggaata
     2761 aaagtagttg aaacaggcta cacatggaga aataatgtac atctggaact tgatgcgaaa
     2821 attaaaagca ctctgaaacc aggtaaaaac attatcgctg ctcattgcca caatgaggtt
     2881 ggaggtgctt ttgttgactt tggattaatg aagaaaaaca acgttggagc aggcttttct
     2941 actaaagcta tacagaaatc ggcagtagtt ttaccaacca attctgttta ctctttcatt
     3001 tgcggtccgg ttcaacttga ccttactttc actgctccat tattgctgga agatttggat
     3061 ttagtaagca cacctatcaa ctatattagc tacaaaacca cttcactcga caaaaaaagc
     3121 catgacgttc agatttattt tgaagcaact cctcaaatag ctgtaaacaa tgacaaacaa
     3181 ccagttaagt tcgacaaact aactaaaaat ggctttactt atgtaaaaac cggtactatc
     3241 aatcagccta ttttaggcca gataggtgac gatttacgta tcgattgggg ttacctttat
     3301 ttgggaggaa aactgtctgc caacgaaaac gtaggtttaa gcgaatactt tgatgctaaa
     3361 aaatcatttg ttgaatcagg aaaactacct gccgatgcct ctccaaaatc gttctcaagc
     3421 aacatgaaag aaaaaatgac tgtgcttgct tatacaaaca accttggtaa ggttgaaaaa
     3481 gaagcagtca acggccatgt tatgattggt tacgatgata tatattcaat tgaatacatg
     3541 tacgaaagct taatgccata ctggaaacat gacggcaaag taaatatctt ccaggcattt
     3601 gaaaaagcag aaagttcata ctcttcatta atggcacgtt gcaatgcatt cgacaaaaaa
     3661 atgatgcaag atgctgaaaa tgctggtgga aaacaatatg ccgaactttg tgctatggga
     3721 taccgtcagg cgattgcagc acacaaactg gtgcaagaca aagaaggaaa cctgcttttc
     3781 ctttctaaag aaaacaacag taacggttgt atcaatacag ttgatgtaac ttatccttca
     3841 gccccattat ttttgcttta taatccggat ttgcttaaag gaatgttgac tccgattttc
     3901 caatacagcg aaagcggacg ttggacaaaa ccttttcctg cacatgattt gggaacttat
     3961 cctattgcaa acggacaact ttacggtggc gatatgccgg ttgaagaagg cggaaacatg
     4021 ttgctgctca ctactgccat tgcttatgcc gaaggaaatg cagaatatgc acacaaacat
     4081 tgggatgtac tgactatttg ggctgattat ttgattcagg ccggcttaga tcctgaaaac
     4141 caattatgta ctgatgactt tgccggacac tttgctcata acacaaactt gtcaatcaaa
     4201 gcaattcttg gaattgccgg atacggaaaa ttagccggta tgttgggaaa agacgacatt
     4261 gcaaaaaaat acattagcac agctaaagaa atggctgcta aatggatgtc gatggcaaat
     4321 gatggcgatc attaccgatt gactttcgac aaaccaggca catggagcca gaaatataac
     4381 attgtttggg ataaagtact tgatatgggt attttcccga aagaagttat ggcaaccgaa
     4441 atttcatatt atctgactaa acaaaataaa ttcggattac cattggatag ccgtaaaacg
     4501 tattcaaaat ccgactggat tctttggact gcttgtttag ctaacaaccc tgaagatttc
     4561 aaaaagatcg ttgctccggt atatacgtat gtaaatgaga ctcaatcacg tgttccatta
     4621 tgcgactggc acgaaacgac tgatggttct gctgtaggat tcaaagcacg ttcagtggtt
     4681 ggtggctact ttatgaaaat gctggaaaat aaaatgaaag caacttctgc taaataaatt
     4741 ctgttttcag aaaaaatatt ccatgatatt tttctaaaaa agcaaatcgg tttttctcaa
     4801 acaattca
//
LOCUS       DATDNM010000385         3803 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_795883, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000385 DATDNM010000000
VERSION     DATDNM010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3803
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_795883"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..890)
                     /locus_tag="VI413_06455"
     CDS             complement(66..890)
                     /locus_tag="VI413_06455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase family protein"
                     /protein_id="HEY6914299.1"
                     /translation="MKRINFLLTVLLFTQFAFSRVQVDTISVFSHKMKKEVKSVVILP
                     ENYSERKHYPVVYLLHGYSDNYSKWVKTVPSIKTLATERQLILVCPDGGFSSWYFDSP
                     IDSTFQYESYVTKDLLTYVDTHYSTIADRSARAITGLSMGGHGALYLAIRNKNLFAHA
                     GSMSGGVDLRFSTKKFDIAKRIGSVETSPQEWDSRSVVNMVSDLKNKDLDLIIDCGVD
                     DFFYQINAALHRRLLALNIDHDYIERPGAHNWEYWTNSIQYQLLYFDRCFAAAKKK"
     gene            complement(1158..1679)
                     /locus_tag="VI413_06460"
     CDS             complement(1158..1679)
                     /locus_tag="VI413_06460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914300.1"
                     /translation="METNQSIEQVLETMDNNIVYKTKSSLVFPILLIVAGVFFFSVNS
                     FFQWSSSSIYPSMFLILGSMSFVVGILKFFFRKIGYVSAENHQKLKAREIYFDVNESD
                     KLLHLMTNGNYTDINSLKRSVSSGLKLRIMSTKDGRICFSQIIAYVQLEYVNVNAPVQ
                     HSIADVQVLNTIH"
     gene            complement(1800..2189)
                     /locus_tag="VI413_06465"
     CDS             complement(1800..2189)
                     /locus_tag="VI413_06465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914301.1"
                     /translation="MKRLLAYCLVVVILLAGVITTSVSAPENVLSKSTSAAGKKNLPD
                     HKQSSFNAADVFASVGMTNEQVRLTNSFQHVTSRIFSSTSNGHRIIYSEQIAQQQYAS
                     GYTGFLLKSAFKQLDGYYLYYLRKLLI"
     gene            2188..2328
                     /locus_tag="VI413_06470"
     CDS             2188..2328
                     /locus_tag="VI413_06470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914302.1"
                     /translation="MAQKYNNKPKEESRVLLRRKDNSQWKNAEREAGISTSLSVAGFI
                     RD"
     gene            complement(2325..3641)
                     /locus_tag="VI413_06475"
     CDS             complement(2325..3641)
                     /locus_tag="VI413_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008776878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEY6914303.1"
                     /translation="MKQEKIGWKYKIPFLLLVAIALLSLIPVEYGSSDTSLVNHADTA
                     WMLVASALVLLMTPGLAFFYGGMVRYKNLVSTLLQSFVALGIISVLWVVVGFSLAFGD
                     SIGGFIGNPFTFAFFKNVGVAPNPAFAATIPFALFAMFQLKFAIITPALITGGLAERV
                     RFSSLLLFICLFSIFIYAPLAHWTWHPEGFLRKWGVLDFAGGTVVHISAGFAALSGAI
                     FLGRRKGVTENEPTNIPYILLGTGLLWFGWFGFNAGSALAADGVATTAFVNTNIASAT
                     AMLTWLLGDGALGKKRSAVGAAVGAVVGLVAITPAAGFVTVGQSIFIGFTAAMVSYTA
                     VRFKSKTNIDDTLDVFSCHGLGGIVGMLLTGVFANKVGLTSGETHTFLFHLLALAIVS
                     VFTFGGSYLLYKITDLIMPMRVTPEQEEKGLDKTQHGEEAFDFIPH"
BASE COUNT         1237 a          783 c          776 g         1007 t
ORIGIN      
        1 aaaagggatc caaaagagga atatcccact tttggatccc tttttctaaa gtttcgggtt
       61 ttctgttatt tcttttttgc agctgcaaaa catctgtcga aatacagcaa ctggtattgg
      121 atagaatttg tccagtattc ccagttatga gctccggggc gttcaatata gtcgtggtct
      181 atattcaacg ccagcaatcg gcggtgcaac gcggcattta tctgataaaa gaaatcgtca
      241 acgccgcaat caataatcag atcaaggtct ttgtttttca aatcgcttac catgtttacc
      301 accgagcggc tatcccattc ctgaggactt gtttccacgc tgccaatgcg cttggcaata
      361 tcgaatttct tggttgagaa acgcaaatct actcctccac tcatacttcc tgcatgtgca
      421 aacaggtttt tattgcggat agccaggtat aaagcaccgt gcccacccat gctaagtccg
      481 gtaatggcgc gagccgaacg gtcggcaatg gttgaatagt gagtatctac ataagttagc
      541 agatctttgg taacatagct ctcatattgg aatgttgaat cgataggact gtcgaaatac
      601 cagctgctaa agcctccatc ggggcaaacg agaatcagtt ggcgttcggt ggcaagggtt
      661 ttaatggaag gaacagtttt tacccatttg gagtaattat cactgtaacc atgaagcagg
      721 taaaccacag gataatgttt tcgttccgaa tagttttcgg gaagaataac taccgatttt
      781 acttcttttt tcattttgtg cgagaaaacg gaaatagtat caacctgtac ccgggaaaaa
      841 gcaaactgtg tgaataaaag tacagtaagc agaaaattga ttcgtttcat aaatgagact
      901 ttagtatttg atattaaatt gtttagctgt aaattatgtg tgggtgctta atttagaaaa
      961 caaaagtagc gataaatgtt tatttctgcg aattaagagt tgaaaatttt gatttgaagt
     1021 gacaaggtat gaaccaggcg gatgtgttag ctgatagtgt atttaaactt cttccaatat
     1081 ttttcgtgcc ggttcagtgc tatttataaa aaaagagttg ccgaaattac ggcaactctt
     1141 tagaaaaaga aatttattta gtggatcgtg ttcaatacct gcacatctgc aatagagtgc
     1201 tgtacgggag cattgacatt tacatattcc aactgaacat aggcaataat ttgcgaaaag
     1261 caaatccggc catctttagt agacataatg cggagtttta ggcccgagct aaccgaacgt
     1321 ttcagtgaat taatgtcagt ataattccca ttagtcatca agtgtagcag tttatcactc
     1381 tcatttacat caaagtaaat ttcgcgggct ttcagtttct gatgattttc ggcagataca
     1441 tacccgatct tacgaaagaa aaacttaaga atgcctacaa caaaactcat cgaccccaat
     1501 atcagaaaca tggatggata aatactgctc gatgaccatt gaaagaagga attgaccgaa
     1561 aagaaaaaga ctccggctac gatcagtaat atagggaata ctaacgaact ctttgtttta
     1621 taaactatat tgttgtccat ggtttccagg acttgttcta ttgattgatt tgtttccata
     1681 aagataaata taatgcaggc gggcaaaata gctttgctcg caactgtgta attttgaaat
     1741 aattaataat tgatagaata atttctccgc gaaagcggat gaaaaggaaa gaaaaggaat
     1801 caaatcaata gtttgcggag atagtacagg taatagccat ccaactgttt gaaagcggat
     1861 ttcaatagaa aaccagtgta gccggaagcg tattgctgct gggcaatttg ttcagaatat
     1921 ataatcctgt gcccattaga tgttgacgaa aaaatccggg aagtaacgtg ttggaacgaa
     1981 tttgtgagcc gaacctgttc gttcgtcatt cccacagagg caaacacatc cgcagcatta
     2041 aaagacgact gtttgtgatc gggcaaattc ttttttccgg ctgcagaagt agatttcgat
     2101 aaaacgtttt caggtgcgga cacagatgta gttatcactc ccgccaggag aattacaacc
     2161 actaaacaat atgccagtaa acgcttcatg gcacaaaaat acaacaataa accgaaagaa
     2221 gaaagtcggg tacttttgcg cagaaaagac aacagccagt ggaaaaacgc agaaagagaa
     2281 gccggcattt cgacttctct ttctgtagct ggttttattc gggattaatg aggtataaaa
     2341 tcgaatgctt cctcgccatg ttgtgttttg tcgagccctt tttcttcttg ttcgggtgta
     2401 acacgcattg gcataatcaa atcagtaatt ttataaagca aatacgagcc gccaaaggta
     2461 aatacgctta caatagccag cgccagcaag tggaaaagga atgtatgtgt ttcgcctgaa
     2521 gtcaggccca ctttgttggc aaatacaccg gtaagaagca tacctacaat accacctaaa
     2581 ccatggcacg aaaatacatc aagcgtatca tcgatattgg ttttagattt aaaacgtacg
     2641 gcagtgtaac taaccatggc agcagtaaac ccgataaaaa tactttggcc gacagtaaca
     2701 aaacctgcag ccggagtaat ggcaacaagt cccacaactg cacctacagc agcgccaaca
     2761 gcagaacgct tcttgcctaa agccccgtcg ccaagcaacc aggttagcat agcggtggcc
     2821 gaagcaatgt ttgtatttac aaaagctgtt gtagctactc catcggcagc caaagccgaa
     2881 ccggcattga atccaaacca gccaaaccac agcaaaccgg tgcccagcag gatataaggg
     2941 atattggtag gttcgttttc ggtaacacct ttacggcggc ctaaaaagat agcgccactc
     3001 aacgctgcaa aaccggcaga gatatgaact accgttccac cagcaaagtc aagcactccc
     3061 catttgcgca gaaatccttc gggatgccag gtccagtgag ccaatggtgc atatataaaa
     3121 atagagaaaa gacaaataaa caatagcaaa gacgaaaagc gaacccgttc ggccagtccg
     3181 ccggtaatca atgccggagt aataatggca aattttaact ggaacatggc aaacaacgca
     3241 aacggaatgg ttgccgcaaa agcaggattg ggtgctacac ctacgttttt gaaaaaagca
     3301 aaagtaaacg gatttccaat aaaaccacca atgctgtcgc caaaggctag gctaaaaccg
     3361 actaccaccc aaagtacact gataattccc agagccacaa agctttgcaa caaagtagaa
     3421 acgaggtttt tgtaacgaac cataccgccg tagaagaaag ccaaaccggg agtcatcaac
     3481 agaaccaaag ccgaagccac caacatccac gctgtgtcgg catgattaac caagctcgta
     3541 tccgagcttc cgtactccac cggaataagc gaaagtaacg caattgcaac taatagtaaa
     3601 aatggaatct tatacttcca accaattttt tcttgtttca ttgtttcttg ttttttagat
     3661 taattcaaaa aagagaatgt cttcgcagac attttatcat atatatttat ctttttctgt
     3721 cttatttctt caaatcggcc gcaaaagtag taatttttct tctaaaaacc atataacaat
     3781 gactaactca tccagatcat att
//
LOCUS       DATDNM010000386         2336 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_902981, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000386 DATDNM010000000
VERSION     DATDNM010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2336
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_902981"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1045)
                     /locus_tag="VI413_06480"
     CDS             complement(<1..1045)
                     /locus_tag="VI413_06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate binding domain-containing protein"
                     /protein_id="HEY6914304.1"
                     /translation="MKKSAFLLLLIGISLQAQQKKTNNSKPISPDLVGVFFEDINYAA
                     DGGLYAEQVQNRSFEYAPSDKSGWNSLTAWDYVAWGFGYGTVSVETSSPIHPNNPHYA
                     VLNIEEVGREGIGLKNSGFDGMVVKAGETYNFSVFLRQLSESAVPFGVKLYNRKGKLL
                     GETTLSTTSKDWKKYNTTINITQSSDTADLVLLATGKGKVAIDMVSLFPEKTFKNRPN
                     GLRADLAQAVADLQPKFMRFPGGCLVHGDGLGNMYRWKNTIGPLEQRIAQKNIWGYHQ
                     TAGLGYFEYFQFCEDMGAKPLPVVAAAVSCQNSGGTWRIGGTGQKGISQAEMPEYIQE
                     VLDLIEWANGPVTS"
     gene            complement(1125..>2336)
                     /locus_tag="VI413_06485"
     CDS             complement(1125..>2336)
                     /locus_tag="VI413_06485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6914305.1"
                     /translation="EANLLKTYYTNAEDILTSAKAEGLRPVNIVVDKTAKKVTFPVES
                     TTDLRTFKPTFGTDKEITVKPVGNSDFSKGDVTYNLKIGKKTEKYTASTVKNHNPVLN
                     GLYADPDVLYSEKTGKFYIYPTSDGFTGWSGTYFKCFSSDNLVSWKDEGIILQLGKDV
                     SWADRNAWAPCIVEKKINGQYKYFYYFSAAQKVGVAVSDNPTGPFVDLGKPLVDTRPE
                     SVKGGQVIDQDVFTDPKTGKSYLYWGNGFMAGAELNDDMTSIKQETLTILKPDRTFRE
                     GTYVFYRNGVYYFMWSEDDTRSENYRVRYATSNSPLGEFTIPENNLVIAKDKEAGIFG
                     TGHNAVLQIPGKDEWYIVYHRFNYPKGINMGDAAGYNREVCIDKMEFNADGSIKQVIP
                     THKGIQPVSLK"
BASE COUNT          621 a          518 c          472 g          725 t
ORIGIN      
        1 tggaagtcac tgggccgttt gcccattcta ttaaatccaa aacttcctga atatactcag
       61 gcatttcggc ttgtgaaatt cccttttgtc ccgttccgcc aatacgccat gttccgcctg
      121 agttttggca gcttacagca gctgccacca ccggaagtgg tttggctccc atatcttcgc
      181 aaaactgaaa atactcaaag tatccaagtc cggcagtttg atggtagccc cagatatttt
      241 tctgtgcaat gcgttgttct aaaggtccaa tcgtattttt ccaacggtac atgttgccaa
      301 gtccatcgcc gtgaacaagg caacctccgg ggaaacgcat gaatttaggt tgaagatcgg
      361 caacagcctg cgccaaatcg gcacgcagtc cgttgggacg gtttttaaag gtcttttcag
      421 gaaaaagcga aaccatatca atagcaacct tgcctttgcc ggtagccaga agcactaaat
      481 ccgcggtgtc agagctttga gtaatattta tagtggtgtt atattttttc cagtcttttg
      541 atgttgtaga aagtgttgtt tcgcctaata atttaccttt tctgttgtaa agcttaacgc
      601 caaatggaac agcactttcc gaaagctgac gcaagaaaac tgagaagtta tacgtttctc
      661 cggcctttac aaccattccg tcaaagcctg aatttttcaa tccgattcct tcacgtccaa
      721 cttcttcgat attcaaaact gcataatgtg gattgttcgg atgtattggt gaactcgttt
      781 ctacagaaac agttccgtat ccaaatcccc aggctacata atcccatgct gtgagtgaat
      841 tccagcccga tttgtcactt ggagcatatt caaacgagcg attttgcacc tgttctgcat
      901 acaatccgcc atcagcggca taattaatgt cttcgaaaaa cacaccaact aagtcggggc
      961 tgattggttt tgagttattc gttttctttt gttgggcctg aagcgaaatt ccaatcaata
     1021 ataagagaaa tgctgatttt ttcataacac atgatgaatg aatatagtct gagttcgact
     1081 ataagccgtg ctcagactat actgataaaa tgaataaaaa agttttattt caaactcacc
     1141 ggttgaatcc ctttgtgagt aggtattacc tgtttgatgc ttccgtcggc attgaattcc
     1201 attttgtcga tacaaacttc acggttatat cctgcagcat cgcccatgtt tattcctttt
     1261 ggataattga aacggtggta tacaatatac cattcgtctt tgcccggaat ctgtagcaca
     1321 gcattatgtc ctgttccgaa aatgcctgct tctttatctt tggcaatgac cagattattt
     1381 tcgggaatcg tgaattcgcc aagcggagag ttggaagtgg cgtaacgtac acggtaattt
     1441 tcgctgcgcg tatcgtcttc cgaccacata aaataataaa cgccattacg ataaaaaacg
     1501 taagttcctt cacggaaagt acggtctggt ttcagaatgg tcaacgtttc ctgtttaatg
     1561 gaagtcatat cgtcgttcag ttcagcccct gccataaagc catttcccca gtaaaggtag
     1621 cttttacctg ttttcggatc ggtaaatacg tcctggtcga taacctgacc acctttaacg
     1681 ctttcgggac gagtgtcaac cagcggtttg cctaaatcaa caaacggtcc ggttggatta
     1741 tcagaaacgg ctacaccaac tttctgtgca gcactgaaat agtagaagta tttgtattgt
     1801 ccgttgattt tcttttccac gatacaaggt gcccaggcat tgcggtctgc ccaacttacg
     1861 tctttgccca gttgcagaat aatgccttcg tctttccagc tcacaagatt gtcggacgaa
     1921 aaacatttga aataagtgcc tgaccaaccg gtaaatccgt cgctggtagg ataaatgtaa
     1981 aacttgcctg ttttttcgga atataagaca tccgggtcag cgtaaaggcc gttcaacaca
     2041 gggttatggt tttttaccgt tgaggcagta tatttttctg tttttttacc aattttgaga
     2101 ttgtaagtta cgtcaccttt actgaaatcc gaattaccaa caggttttac agtaatctct
     2161 ttatcagttc cgaatgtcgg tttgaaagtc ctcagatcag ttgttgattc aaccgggaaa
     2221 gtaactttct tagctgtttt atccaccact atatttaccg gacgaagtcc ctctgcttta
     2281 gcagatgtca gaatatcttc agcatttgtg taataagttt tcagaaggtt agcttc
//
LOCUS       DATDNM010000387         3800 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_796134, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000387 DATDNM010000000
VERSION     DATDNM010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3800
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_796134"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(420..1946)
                     /locus_tag="VI413_06490"
     CDS             complement(420..1946)
                     /locus_tag="VI413_06490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914306.1"
                     /translation="MPNEMKQAEQIMETSPDSALHILQHMQSIQTMSDANRALYGLLY
                     FEALDKNNKPLQPDSLISFSLNYYQSHNKKNYLAKCYYYKARILKSTQRFDDATMLYL
                     KALDLISDNQENYLLLGKIYSDMGDICIMQKDYNESLRKFNESVSWFTKARNKVEASY
                     RVISIGKVYHFQRRYIKALQFYERALSQTRDSLLQGFAFQEIGINYFWAKQYDSAQYY
                     LRKSLQFPYKGTNYAIRSSNLGDLFFEQQQYDSAFFYASLALKYPTTFFNQRECYRIL
                     ANTEYQRRDFDKMGFYISKYQDCTDSVRKIEIQTKTTVLEDMHQTTQAASITKRFLVV
                     LVWVVPIILLVSLLIVFRLRKRNKGKEKQLEEAEVQISQKQSLLIDSLKQKIEEARSM
                     QLASYKKATPAQREQMDRELYDKCLHVGDWELFRRLMNRTFNNVVDLLETKYPDITHK
                     ELVWSCLYLLDIPTPDIALVLESQTASLYKLKQRLTQKMNLKSTRELEQLLHNLSEGK
                     "
     gene            complement(2193..2882)
                     /locus_tag="VI413_06495"
     CDS             complement(2193..2882)
                     /locus_tag="VI413_06495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004310712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEY6914307.1"
                     /translation="MKYNPITDLFNLLFPDLCVVCGNNLLRNEQHICLSCLHNIPKTN
                     YHLFSDNPVDKRFWGKVPICSGTAFFFFQKGSSFQKLLHSLKYKGNKEIGEVLGKYAA
                     ADLSDTPYFETVDVIIPVPLHPKKLKKRGYNQSEWIAMGLSLILEKPCDTTSLFRLRE
                     SDTQTKKTVFQRYENTEGLFGLLDKNTLSGKHVLLVDDVLTTGSTLEACIQMLLKCED
                     IKVSVFTLAVA"
     gene            complement(2967..3335)
                     /locus_tag="VI413_06500"
     CDS             complement(2967..3335)
                     /locus_tag="VI413_06500"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018666576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEY6914308.1"
                     /translation="MKKRIRSFGYAGRGIRIVFGTEANMKIHIGIAVLVIVCGFGFSI
                     SIIEWIACLLCVGLVFCAEMMNTAIENVVDLASPNLHPLAGKAKDIAAGAVLICAIIS
                     VVVGLLIFVPKVWMVLVSHI"
     gene            complement(3432..>3800)
                     /locus_tag="VI413_06505"
     CDS             complement(3432..>3800)
                     /locus_tag="VI413_06505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005840678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEY6914309.1"
                     /translation="RRPYQFVYKEGADFIFMNQETYDQHPIAHDLINGVDFLLEGMSI
                     EVVSDASTDTVLYADMPVKVQMKVTYTEPGVKGDTATNTLKPATVESGATVRVPLFIT
                     EGETIEIDTRDGSYLGRVKA"
BASE COUNT         1256 a          711 c          629 g         1204 t
ORIGIN      
        1 gattcaactt gtaaacttgt tgccaacgga ctattgcttc caccaggttg agaaggatca
       61 tcatttctaa ttggattacc tgaaaataat gtttgagaaa aaaaagcacc aaataataga
      121 acagaagtag tgatgaattt aaaattaact gttttcataa aaattgagtt atagtgttga
      181 acatattttt tgaatgtctt aagcgatttt gtatggtgct aaattagaca ctgggagtga
      241 atacaacaaa ttttagggca aaataaatta ggacaaggcg ttttacaagt tattgattta
      301 ctgcaatata caactaagac aagggcaaat attgggacaa gggcaaaggg caataaaaaa
      361 ccctgtcaaa aaacagggtt gttaacaaat ttattatcca aaaacagaag taatgtgatt
      421 tattttccct ctgacaaatt atgcaataat tgctcaagtt ctctcgtact cttcaggttc
      481 attttttgcg tcaaacgctg ttttagctta tagaggctgg cggtctggct ttctaaaacc
      541 aaagcaatat ccggagtagg aatatctaac agataaagac aagaccaaac caattctttg
      601 tgggtaatat ccggatattt tgtctctagc aaatccacta cattattaaa tgtgcggttc
      661 atcagtcgcc ggaacaattc ccagtcacct acatgtagac atttatcata tagctctcta
      721 tccatttgct cccgttgggc aggagttgct tttttataac tcgccaattg cattgagcgg
      781 gcttcttcaa tcttctgttt caaactgtca atcaacaaag attgtttttg gctgatttga
      841 acttcagcct cttcgagttg tttctctttt cctttattcc gtttacgaag ccgaaatact
      901 atcaacaaac ttactagtag aataatggga acaacccaga ctaaaactac taaaaatcgc
      961 tttgtaatac tagctgcctg agttgtttga tgcatatctt ccaatacagt tgttttagtt
     1021 tggatttcta ttttcctgac agaatcagta caatcctgat acttggatat ataaaacccc
     1081 atcttatcaa agtctctgcg ttggtattcc gtattagcta aaatgcggta acattctcgc
     1141 tgattaaaaa aagttgttgg atatttcaag gctaagcttg cataaaaaaa agcagaatcg
     1201 tattgctgtt gttcaaaaaa caaatcaccc agatttgaac ttctgattgc ataattcgtt
     1261 cccttgtacg gaaattgcaa actttttcga agataatact gagcagaatc gtattgcttc
     1321 gcccaaaaat aatttattcc aatttcctga aatgcaaatc cttgaagcaa cgaatctctt
     1381 gtttgagaaa gtgctcgttc ataaaactgg agagctttta tatatcttct ctggaaatga
     1441 tacacttttc cgatagatat taccctataa ctagcctcga ctttgttcct agccttagta
     1501 aaccaactca cagattcatt aaactttcga agtgactcat tataatcctt ttgcataata
     1561 caaatatccc ccatatccga ataaatcttt cccagaagaa gataattttc ttggttatca
     1621 ctaattaaat ctagagcctt taaatacaac attgtagcat catcgaaacg ttgagtagat
     1681 ttaagtatcc ttgctttata ataatagcat ttggccagat aatttttctt attatgactt
     1741 tgataataat tcagagaaaa ggaaattaat gagtcaggtt gtaagggttt attattttta
     1801 tccaatgctt caaaatacaa caagccgtac aatgccctat tggcatcgga catggtttgt
     1861 atagattgca tgtgttgaag aatgtgtaaa gcagagtcgg gagaggtttc cattatttgc
     1921 tcagcctgct tcatttcatt gggcataagt gagcagccta ccaaaattat acaaaaaaaa
     1981 ggaagtagaa agcgaagttt tctatgcata aaatatcaga cactattttt attcagaaat
     2041 gattgtatct aaatgcaaaa ctacaaatta atattctttt ttatagagtc gttttctggt
     2101 gttttaagag aatgagagtt aaaacatttt cgcaaattca aattataaca tttaaattgc
     2161 tcactctttt ttgaaagtgt aaaaatgact ggtcaagcta ctgccagcgt gaaaacactt
     2221 acttttatat cttcacattt caacaacatc tgaatgcacg cttcaagggt agaaccggtt
     2281 gttaatacat catctaccag aagaacgtgt ttccctgata atgtattttt atccaacaat
     2341 ccgaaaagtc cttctgtatt ttcatacctc tggaatactg ttttcttagt ttgtgtatca
     2401 ctctcacgca gcctgaataa agaagttgta tcacacggtt tttctaaaat taaagataga
     2461 cccatggcaa tccactcact ctgattatat ccccgttttt ttagtttttt aggatgcagc
     2521 ggaaccggaa ttatcacatc aacagtttca aaatatgggg tgtcagacaa atcagcagca
     2581 gcatactttc caagaacttc tccaatctct ttattccctt tgtatttaag agaatgaagt
     2641 aatttttgaa aagatgaacc tttttggaaa aagaaaaaag cagttccact gcaaattgga
     2701 acttttcccc agaagcgctt gtctaccgga ttatcagaaa acagatggta attcgttttc
     2761 ggtatattat gcagacagct aagacatata tgttgctcgt ttcggagtaa attattacca
     2821 caaacaacac ataaatcagg gaacaacaag ttaaataaat cagttatcgg attgtatttc
     2881 atgcattctg tcaattttta gatcaaaaga tacatctata tcgaaataat cagaaaaaac
     2941 aattagtatt gactatgcag ccgcgtttat atatgagata ctaaaaccat ccatactttc
     3001 ggaacaaaaa tcagcaatcc gactacaact gaaataatgg cgcaaatcaa cacagcaccg
     3061 gctgctatat cctttgcttt tccggctagt gggtgtaagt taggcgacgc caaatcaacc
     3121 acgttttcta tggccgtatt catcatttcg gcacaaaaaa ccaatccgac acaaagcaaa
     3181 cacgctatcc attcaattat gctaattgag aaaccgaacc cacaaacgat tacgaggaca
     3241 gcaattccaa tatggatttt catattcgct tcggtgccaa agacaattcg aataccacga
     3301 ccggcataac caaaacttct tattcttttc ttcataggat ttttttttaa ttgattacaa
     3361 atgtataaaa aaatccgaca tacaatggat ttgtatgccg gactataata ttaagaagta
     3421 attttgagag attacgcttt tacacgaccc agataagaac catcgcgtgt atcaatttca
     3481 atagtttcac cttctgtaat aaacaatgga acacgtactg tagcaccaga ctcaacagta
     3541 gctggtttaa gtgtattagt cgcagtatca ccttttactc caggttcagt ataggttact
     3601 ttcatttgca cttttacagg catatcagca taaagaacag tatcggttga tgcatccgaa
     3661 actacttcga tactcatacc ttcgagcaga aaatcaacac cgttgattaa gtcgtgagca
     3721 attggatgtt gatcgtaagt ttcctgattc atgaaaatga aatcagcacc ttctttgtaa
     3781 acgaattggt aagggcgacg
//
LOCUS       DATDNM010000388         2065 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_689028, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000388 DATDNM010000000
VERSION     DATDNM010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_689028"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VI413_06510"
     CDS             complement(<1..530)
                     /locus_tag="VI413_06510"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6914310.1"
                     /translation="MTITSLIYKALYWYISTVDKKKEVLFMNYGYHDSAEAIELHSID
                     EINRYSIQLYHRLAKMVDLNNKDIVEVGSGRGGGLAYITKRFAPATALGIDLDAKAAR
                     FGNKHYNLNGLTFKQGNAQHLDLSDDSIDVVLNVESSHRYPHMDLFLNEVYRILKPGG
                     HFLFTDFRYKDDMVALT"
     gene            complement(758..1213)
                     /locus_tag="VI413_06515"
     CDS             complement(758..1213)
                     /locus_tag="VI413_06515"
                     /inference="COORDINATES: protein motif:HMM:NF015999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEY6914311.1"
                     /translation="MPVRKLLDFLNANDVKFVSIHHSKAYTAMEIAHSAHIHGHELAK
                     TVMIKVDGKMAMAVLPASRMIDLDVLKKAIGASQVELATEPEFVQLFPDCEIGAMPPF
                     GNLFGMEVYVSSALAEDEEIAFNAGFLTELVRMWYLDFEKLVNPKVLSF"
     gene            1416..>2065
                     /locus_tag="VI413_06520"
     CDS             1416..>2065
                     /locus_tag="VI413_06520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018711612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6914312.1"
                     /translation="MADDKKVIFSMVGVSKTFPPQKKVLNNIYLSFFYGAKIGIIGLN
                     GSGKSTLLKIIAGVEKSFDGEVVFSPGYSVGYLEQDPKLDPTKTVKEIVQEGVQEIVD
                     MIAEYDKINEQFAEPDADFDKLIARQGELQELLDHADAWNLDNKLERAMDALRCPPED
                     WKIENLSGGERRRVALCRLLLRNPDILLLDEPTNHLDAESVEWLEHHLQQYAGTVIA"
BASE COUNT          635 a          440 c          412 g          578 t
ORIGIN      
        1 gtcaaagcaa ccatatcatc cttatagcgg aaatccgtga ataaaaaatg tcctcccggt
       61 tttagaatcc ggtaaacttc gttcaggaac aaatccatat gaggataccg atgcgaggat
      121 tccacattaa ggactacatc aatgctatca tcactcaaat ccaaatgctg cgcatttccc
      181 tgtttaaatg tcaacccatt cagattataa tgcttgtttc caaacctggc tgcctttgca
      241 tccagatcaa tacccagtgc agttgccgga gcaaatcgct tggtgatata agcaagccca
      301 ccgccgcggc cactgcccac ttcaacaata tctttattat tgagatcaac cattttggct
      361 aaccgatgat aaagttgaat tgaataccgg ttaatctcat caatgctgtg aagttctatt
      421 gcttcagcag aatcatgata accataattc ataaacagca cctccttttt cttgtcaacg
      481 gtactaatat accagtacaa ggctttatat ataagtgaag taatagtcat aaaaaacaaa
      541 tttaattgat tatcgtatct tacaaagaga actctctttg agcgggttaa cagtttacat
      601 acgatattaa aaccagggat ttaaatatta ttacgttggg gcagtaggct tttgaacaat
      661 tttcaggttg gcattaggca actgaagtta atttaagatc ctctcgactt atttaagaag
      721 ataatcaaaa cagaagtacc ggttcagtac cccgttttca gaaagacagc accttcggat
      781 tcaccagttt ctcgaaatcc agataccaca tgcggaccaa ctcagtcagg aacccggcat
      841 taaaagcaat ttcttcgtct tcggcaagtg ctgaggacac gtaaacctcc attccgaaaa
      901 gattgccgaa aggcggcatg gcaccaattt cacagtcggg aaacagttga acgaactcag
      961 gttcagtagc aagttcaacc tggcttgctc caatagcttt tttcaaaaca tcaagatcaa
     1021 tcattcggga ggccggcaga acagccatgg ccatctttcc atcaactttt atcattacag
     1081 tttttgccaa ttcatgtccg tggatatgcg cagaatgtgc aatttccatt gcagtataag
     1141 cttttgaatg atgaatagaa acaaatttga catcattggc attcagaaaa tcgagtaatt
     1201 tgcggactgg catagtagtt tggtttttaa ggtttgagga aattattgtt gcttcattca
     1261 ataaatatat aacagtttca gagtctgtta agttgattga agccgcagaa acatgcatgc
     1321 ataattgagt ttaaaaacca tttctcaatt ccctctttct ttgtatcttt gcatcccaat
     1381 ctaaaattgt aaatctaaat tcgtaaataa attttatggc tgacgataaa aaagttattt
     1441 tctcgatggt aggagtcagt aagacttttc cacctcaaaa aaaagtatta aacaacattt
     1501 acctttcgtt tttctacgga gctaaaatcg gtattatcgg tttgaacggt tcgggtaaat
     1561 caaccctgtt gaaaattatt gccggagtag aaaaaagctt cgatggtgaa gtggttttct
     1621 ctccaggtta ctcagtaggc tatctggaac aggatccaaa actcgacccg acaaaaacgg
     1681 ttaaagaaat tgtgcaggaa ggcgtacagg aaattgtgga tatgatagcc gagtacgaca
     1741 aaatcaacga acaatttgcc gaaccggatg ctgatttcga taaactgatt gcccgccagg
     1801 gcgaattgca ggaattgctg gaccatgccg atgcgtggaa tctggacaat aaactggaac
     1861 gcgcgatgga tgctttgcgt tgtccgcccg aagactggaa aattgaaaac ctctccggag
     1921 gtgagcgccg ccgtgtggcc ttgtgccgcc tgttgctccg caatcctgac atcctgttgc
     1981 tcgatgagcc taccaaccac ctcgatgccg aatcggtgga atggttggaa caccacctgc
     2041 aacaatatgc cggaaccgtt attgc
//
LOCUS       DATDNM010000389         7209 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_796221, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000389 DATDNM010000000
VERSION     DATDNM010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7209
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_796221"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            394..1026
                     /locus_tag="VI413_06525"
     CDS             394..1026
                     /locus_tag="VI413_06525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914313.1"
                     /translation="MRKLIFVFTTFILIGCNMHKNDKVIFISLLPEIKWDSLGVPQIV
                     VRQYAEFSLSSKNNLIISKSEDMYEVDNMDIPKYDLDSFSYYKVNDSFVKSMTKLIES
                     NYKKSYRRTLGKNDIDDRNMDFIIIIRDNLFKIIPYEHDYLPEELKQIDDSIDKYLNS
                     TSLIQYKFNHSIETISRLQDSLFKRLPPPPRPLRSTIKFTSPIINDKKEK"
     gene            complement(1588..1743)
                     /locus_tag="VI413_06530"
     CDS             complement(1588..1743)
                     /locus_tag="VI413_06530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914314.1"
                     /translation="MDSTVSKLRNNFPTPDKALQNCGKVSEVRMEYCKVAWLNPMFGR
                     PVTNLHG"
     gene            1892..2965
                     /locus_tag="VI413_06535"
     CDS             1892..2965
                     /locus_tag="VI413_06535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinogalactan endo-1,4-beta-galactosidase"
                     /protein_id="HEY6914315.1"
                     /translation="MSHCIKKSFVLFVSLVLISFTSGCQAENPIVNPPVTTNSDSTTF
                     AKGADISWLPQMEATGYTFYNDNGVAEDCFKILKDHGINSIRLRTWVNPSNDKASGHC
                     SKEETVAMAVRAKQWGMRVMIDFHYSDTWADPGKQVKPKAWVGLTFYQLQQALYDYTF
                     DMMTALKTAGITPEWVQVGNETPGGMLLPEGSTDNWPQLAKLINKGYDAIKAVSPTSK
                     VILHVDQGNNNARFRWWFDAAKANGAKYDVIGMSYYPYWLSDAHPDYTLSINDLAANL
                     KDMASRYGKEVMVVEVGGEDTKVQNTYDMLVAVLQKTKDVPNNKGTGVFYWEPEGARS
                     WSHYALSCWGSDGRPTSALDAFK"
     gene            3262..>7209
                     /locus_tag="VI413_06540"
     CDS             3262..>7209
                     /locus_tag="VI413_06540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005944911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6914316.1"
                     /translation="MPANQKSHSFFAHILFKTKQIDLLIGLLIAGMQSFGQTDNYRAF
                     DNVFLNSDASRVNCFVQDKQGLLWFGSNKGLFSYNGYTVQHHFHPFTEINNQANQMIN
                     CGTLVDATHLYLGSDNGILIYNTETYSFEKTEIGFPTDVRSILLSGKYLWVGSLNGLY
                     RYNLTNKRLENFSKSAGIPHRATYSILQSKQKILYIGTYNGLCYLEPGSTVFKKINLP
                     VQFAKNSLLVNSLLEDSIRKCIWVGTEGYLFKLSTATGAVERIGAFDNNSIKSLALDQ
                     NQNLLLGTDNGLYVYNKESRVVKHVVHDSRDGKSLANNIIWSIFVDRNKNAWFGTDYG
                     VSLSKNNRSYRYVPISQLTGIGDGNQLQVIYKDSRNNFWYGGTNGLIFTPAGSKTCIW
                     YKMGDARYPISHNRIRCIYEDKDNNLWVATDGSINRYNYQNHQFIHYNIVDSTRTRNA
                     NWAYSLFEDKQGRLWIATCLGGVFVVNKEKLIKSTANYYMAEQNFYKNTSKKGLSDNY
                     ILQVLNDLKGSVWALTYANEINKIDAVTSIVTKFSGTKDNAFSLICDREGMVWLGGFG
                     SLKRIDPKTNNMKTIRFDGIKNAPIRLLTEENNHIWITTTGGTFVLDKKTLNTKYAGI
                     ANQTFSCSFFNPSDNEIYLGGVDGFVAFSPTIVREKKSNPNLTLTALYVNDRFFQPGA
                     DYAGKSLLFAKNISLRYDQNNLTFEFSDFKYAQMDDNKYVYQLEGVDNEWRTVKPNSN
                     RISYNNLAPGNYRLTIGSFDPEGKSVVTLLDFKLTIRPPWYYSIWAKIVYAILILGLF
                     LWVLNYYRERHRTRIERIEKEKSLELSNLKIDFFTNVSHDFKTPLSLIIAPVSKLLVE
                     TKNAQLKKQLGLIQQNALHLNALIQQVIGFERSDDATKTSLLLSHVEFIEFAQSVFSV
                     YEDAFKAKNLQVNFKSNVESLLVNIDVLKMESVLNNLISNALKFTTEGRKIELEISHS
                     AENLLTVSISDTGIGIPKDDLPFVFDRFFQSRKTSNDKEGSGIGLSLVKNYVELHNGT
                     ITIASEEDKGTTITLVLPVVELQSEAETPDQSVSINNETNPDKPLILIVEDNLQVSDF
                     IVQALTPFYRCSIAHNGKTGLNLAQIITPDLIIADIMMPVMDGLEMCRQLQKMKELSL
                     IPVIMLTAKDDKMTEEKSIELGVNTFMPKPFDTNMLLLRIKQLIGSKVKMEESLRLEV
                     LSTPKEIEAESWDEKLLADITKIIEDNVADPEMNVNNLSQLSGISTKQIYRRIKQLTG
                     LTPVDYIRSIRMKKAAMLLAQRKFSVAEVMYLVGFSNHSYFSKCFQAKYGKTPK"
BASE COUNT         2290 a         1519 c         1449 g         1951 t
ORIGIN      
        1 cacatcgtaa gggcgcgatg ccactttttc taccaggttt tgaggaggac gaatgccctt
       61 aaatggttta ataatagcca taatagttcg tttattgttt tgaatttttt aaggacacaa
      121 atgtaagaaa aaagtttgaa aaagcagaat agaaaaaagg ctggagctgc caattacttt
      181 ataatacaat atcccatatt gccgaagcat tttttctaaa ttatttttgt agatttgtga
      241 acgaaaaaaa tatgtaaacc atttagtttt cgcggttatg tcaactttgt cagacgtagc
      301 aattgtgcag cagcaagggg caatgacggg tatcaagcat gtatagataa aaagactggt
      361 tgacacgtta tttatttctt aaaattcgat aatatgagaa aactaatttt tgtatttaca
      421 acattcattc ttattggttg caatatgcat aagaacgata aagttatttt tataagttta
      481 ttgcctgaaa taaagtggga tagtttagga gttccacaaa tagtagtaag acaatatgcc
      541 gaattttcac tatcgtcaaa aaacaactta attatttcaa agtcagaaga catgtatgaa
      601 gttgacaata tggacattcc taaatatgac ttggatagtt tttcttacta caaagtcaat
      661 gactcatttg tgaaatcaat gactaaatta atagagagta attataaaaa atcatatcga
      721 cgaactttag gcaagaatga cattgatgac agaaacatgg attttattat cattatacga
      781 gacaatcttt ttaagatcat tccctatgaa cacgactatt tgccagaaga actcaaacaa
      841 attgacgact cgattgacaa atatctgaat tcaacaagtt tgatacaata taaattcaat
      901 cattctattg agacaattag caggttacaa gatagtttat ttaaaagact gccaccgccg
      961 ccgagaccac ttagatcaac aataaagttt acatcaccaa taataaacga taaaaaagaa
     1021 aagtagatta aacagaaacc taacaaatcc tgaataaagc aagtttagcg aaacgtaact
     1081 tgcgcagtaa agatcacaaa agtctttcaa cttaagatta aacaaagttt gttttgtcac
     1141 acaatgccat accacagcgg ggtttcgcga tttgtaatcg cggtcgacta ctaatatacg
     1201 cgattaaaaa tcgcgaaacc catttcccaa cttgggcaaa gctaccccga aaattatttt
     1261 accctgtcct acttgggcaa acccgcctga aaatcagttc gcccttgccc tgcttgggca
     1321 agcttgcctg aaaattaatt ggcctttgcc ctaattgggc aagctcgctt gaaaaatatt
     1381 ttgccgttgc cctgttaggg caaacaagcc tgaatacatt tggtaggtct gcagaattac
     1441 atcaacaaag caaacggtca gtttttagcg ttacaaaact gcaggaagcc atccgaggtt
     1501 cggatttaac caagcaggtt tgtaacagac cgtccgaagt tcggattgaa cgatgcaact
     1561 ttgtaaaacc ccatccgaag ttcggattta accatgcaga tttgtaacag gccgtccgaa
     1621 catcggattt aaccatgcaa ctttgcaata ctccatccga acttcggaaa ccttcccgca
     1681 gttttgtaat gccttatccg gagttgggaa attgtttcgc aacttggaaa cagttgaatc
     1741 cattcttttt actctgtccc ttttatttcc ttatttgtcc tttttatatt tataaaatga
     1801 agtcgaaata cctacatttg taaacttgaa ataaaacaaa aacagttgta tctttacgct
     1861 caaatctaac aatctgataa actacctgat tatgtcacat tgcattaaaa agtcattcgt
     1921 tttattcgtt tcgctggttc tgataagttt cacctccggt tgccaggccg aaaatccgat
     1981 agtcaatcct cctgtcacca caaactccga cagcacaact tttgccaaag gtgccgatat
     2041 tagctggctg ccgcaaatgg aagctaccgg ttatacgttt tacaacgaca acggtgtggc
     2101 cgaagactgc ttcaagattt tgaaagacca cggtataaac tctatccgcc tacgcacgtg
     2161 ggtaaaccct tcgaacgaca aagccagcgg acattgcagc aaagaagaaa cagtggcaat
     2221 ggccgtgcgt gccaaacaat ggggcatgcg ggtgatgatt gatttccatt acagcgacac
     2281 ctgggccgac cctggcaagc aagtaaaacc caaggcatgg gtggggctca ctttctacca
     2341 attgcaacaa gcactttacg attacacgtt cgatatgatg acggcgttga aaacggcggg
     2401 cattacgccc gaatgggttc aggtgggcaa cgaaacacct ggtggcatgc tccttccgga
     2461 aggaagcacc gacaattggc cgcaactggc aaagcttatc aataaaggat atgatgctat
     2521 taaagccgtt agcccaactt cgaaagtcat tctgcacgtc gaccagggaa ataataacgc
     2581 ccggttccgc tggtggtttg acgctgccaa ggcaaatggt gccaaatacg atgtgattgg
     2641 aatgtcctat tatccgtact ggcttagcga cgcgcatccc gattatacac tttctatcaa
     2701 tgaccttgct gcaaatctga aagatatggc cagtcgctac ggcaaagaag taatggtggt
     2761 ggaagtgggt ggcgaagata ccaaagtgca aaacacttac gacatgcttg tggcagttct
     2821 gcaaaaaaca aaggatgttc cgaacaacaa aggaacgggc gtattctatt gggaaccgga
     2881 aggagctcgt agctggagcc attatgcgtt gagttgctgg ggaagcgatg gcaggccaac
     2941 tagtgcgttg gatgcgttta aataaaaaat tgaaaccagt atttagctac agttggatca
     3001 attgtctcct gtcaattgcc tcctgcttta gctggaagca aaataatcac aacatagaaa
     3061 ttggctttag ccgaattatt gtagctattt ggctaaagcc aattccttct attctcctta
     3121 tcctccagct aaagcaggag gcaattaatt ccgaattcta caactaattt ttaaatacaa
     3181 gtcctattat ttttgtttgg caatcaacaa gaactttgat tatatttgca gcacctttat
     3241 ttcacctgca taaccagata tatgcctgca aaccaaaaat cacactcttt ttttgcccat
     3301 attcttttca agacaaaaca aatcgacctg ttgattggct tgctgattgc cggcatgcaa
     3361 tcattcggac aaacagacaa ctaccgcgcc ttcgacaatg ttttcctgaa ttccgatgct
     3421 tccagagtca attgctttgt tcaggacaag cagggattgc tgtggtttgg ttccaacaaa
     3481 ggcctgttca gctataatgg ctacactgtt cagcaccatt ttcatccgtt cacggagata
     3541 aataatcagg cgaaccaaat gattaattgc ggaacattgg tcgatgccac tcatctgtat
     3601 ttaggctccg ataatggtat tttaatttat aataccgaaa catattcgtt cgaaaaaaca
     3661 gaaattggtt tccctaccga tgttcgttcc atcttacttt ccggaaagta tttatgggtt
     3721 ggctccctga atggattgta ccgctacaac ctcaccaata aacgtcttga gaatttcagc
     3781 aaaagtgccg gaattcctca ccgggcaact tattccatcc tgcaatcaaa acaaaaaatc
     3841 ctttatattg gaacttacaa cgggctttgt tatctcgaac ccggctcaac cgttttcaaa
     3901 aaaatcaatc tgccggttca gtttgccaaa aacagtttgt tggtcaattc attgctcgaa
     3961 gacagcatac gaaaatgcat ttgggttgga actgaaggtt atttgttcaa attaagtact
     4021 gccaccggag ctgtagaacg tataggtgct ttcgacaata attcaataaa atcactggcg
     4081 ttggatcaaa accagaactt gctgctcgga accgacaatg gtttgtacgt ttataacaaa
     4141 gaaagcagag tggtgaaaca cgtagttcac gactcgcgcg acggtaaatc actggctaat
     4201 aatattatct ggagcatctt tgttgacagg aacaagaatg catggtttgg taccgactac
     4261 ggtgtttcac tatccaaaaa caaccgcagt taccgctacg ttcctatttc gcaattgacc
     4321 ggaattggcg acggaaacca gttgcaggtg atttataagg attcgcgcaa caacttttgg
     4381 tatggtggca ctaacggact tattttcact cctgccggtt cgaaaacctg catttggtac
     4441 aaaatgggtg atgcccgata cccgatctcg cacaaccgga ttcggtgcat ttacgaagac
     4501 aaagacaaca acctgtgggt ggccactgat ggcagtatca accgctacaa ttatcagaat
     4561 catcagttta tccattacaa cattgtggac agcacccgca cccgcaatgc caactgggct
     4621 tatagcctgt tcgaagacaa acagggacgg ctgtggattg caacttgcct aggaggcgta
     4681 tttgtagtga ataaagagaa actgattaaa agtaccgcca actactacat ggccgaacaa
     4741 aacttttata aaaacacaag caagaaagga ttaagcgaca attacattct tcaggtgtta
     4801 aacgacttga aaggcagtgt atgggcattg acttatgcca atgaaataaa taaaattgat
     4861 gcagttacaa gtattgttac caaattctca ggaacaaaag acaatgcttt tagcctgatt
     4921 tgtgaccgtg aaggaatggt gtggctggga ggttttggca gtttaaaacg cattgatccc
     4981 aaaacaaaca acatgaaaac tatccggttc gacgggatta agaatgcacc tatacgtttg
     5041 ttaaccgagg aaaacaacca tatctggatt acaactaccg gtggaacttt tgttctggac
     5101 aaaaaaacac tgaatacaaa atatgccgga attgccaacc agactttctc gtgcagtttt
     5161 ttcaatccat cggacaatga aatttacctg ggtggtgtgg atggtttcgt ggccttctcc
     5221 ccaaccattg ttcgggaaaa gaaatcaaat cccaacctta ctctcacggc tctgtatgtc
     5281 aatgaccgct tctttcagcc cggagccgat tatgcaggaa aaagtttatt atttgccaaa
     5341 aacatctcac tacggtacga ccaaaacaac ctgactttcg agttttccga tttcaaatac
     5401 gcgcaaatgg acgacaacaa gtatgtctat caacttgaag gcgtagataa tgaatggcgt
     5461 accgtaaaac ccaattcgaa ccgcatctcg tacaacaatc tggcacccgg gaattatcgc
     5521 ctcaccattg gcagcttcga cccggaaggt aaaagtgtgg tcacattgct cgactttaaa
     5581 cttaccattc gcccgccgtg gtactacagc atttgggcaa aaatcgttta tgcaatactg
     5641 attctgggat tgttcctgtg ggtactcaat tactaccgtg aacgccaccg cacccgcata
     5701 gaacgtatcg aaaaagaaaa atcattggaa ctatcgaacc tgaaaattga tttctttacc
     5761 aatgtgtcgc acgattttaa aacaccgctt agcctgatta ttgccccggt aagcaaacta
     5821 ttggtagaaa ctaagaatgc acaattgaaa aaacagttgg gtttaataca gcaaaatgcg
     5881 ctgcatctga atgcattaat tcagcaagta attggttttg aacgctcgga tgatgccaca
     5941 aaaacgagtt tgctactgtc gcatgtagag tttattgaat tcgcccaaag tgttttttcg
     6001 gtatacgaag acgcatttaa ggcaaaaaat ctgcaagtga atttcaaatc caatgtggaa
     6061 agtctgcttg tcaatatcga tgttttgaaa atggaatcgg tactaaataa cctgatttca
     6121 aatgccttga agtttacaac cgaaggtaga aaaatcgagt tggaaatcag tcattcagct
     6181 gagaatttac ttacagtcag tatttccgac accggtatag gcattccgaa agacgatttg
     6241 ccattcgttt ttgaccgttt tttccaatca cgcaaaacat ctaacgacaa ggaaggtagc
     6301 ggcattggac tttcattggt aaaaaactac gtggagctac ataatggaac catcacgata
     6361 gcttccgaag aggataaagg tacaacaata acgttggttt tgccggttgt tgagttgcaa
     6421 tcggaggctg aaacgcctga tcaatcagta agtatcaaca acgaaacaaa cccggacaaa
     6481 ccactgattc taattgttga agataacctt caggtaagcg attttattgt tcaggcacta
     6541 actccatttt accgttgctc cattgcccac aacggaaaaa cgggattgaa tctggctcag
     6601 ataattaccc ccgacctgat tattgccgac attatgatgc cggtaatgga tggattggaa
     6661 atgtgcaggc aacttcagaa aatgaaagag ctgtcgctca ttccggtgat tatgctcacg
     6721 gccaaagacg acaaaatgac cgaagaaaaa agcattgaac taggcgtaaa tacttttatg
     6781 cctaaacctt tcgatacgaa tatgctgttg cttcgcatca aacaactgat tggttcaaag
     6841 gtaaaaatgg aagaaagcct tcgtttggaa gtgctgtcta ctcccaaaga aattgaagcc
     6901 gaatcgtggg acgagaaact attggccgac ataaccaaaa tcatcgaaga caacgttgct
     6961 gatcccgaaa tgaacgtaaa caacctaagc cagttgtcgg gcatcagcac caagcaaatt
     7021 taccgccgca taaaacaact gaccggacta actccggtag attatatccg ctctatccgc
     7081 atgaaaaaag ctgccatgtt gctggcacaa cggaaatttt ctgtggcaga agtcatgtat
     7141 ctggtcggat tctccaatca ttcctatttc tccaaatgct tccaggccaa atacggcaaa
     7201 actccgaag
//
LOCUS       DATDNM010000390         3661 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1864555, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000390 DATDNM010000000
VERSION     DATDNM010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3661
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1864555"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            340..2637
                     /locus_tag="VI413_06545"
     CDS             340..2637
                     /locus_tag="VI413_06545"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEY6914317.1"
                     /translation="METSHDYPENQKLSPWWRRGLVIILLLEFATLIWVTTGSYYRKS
                     QPPIPEQVTDSTGLVVFTKIDIEAGQQVFLKKGLMNNGSIWGHGAYMGPDYSAQYLHN
                     LAIEVRNQIALEKFKRGYSNLTSDQKESLVGLTRDFLIKNRYNPDSRTLYFTKVEINS
                     FNAQISYWKDYFQKPSTNLGLPKTLIVNQDELRQLTSFFAWAAWASVANQPTKNYSYT
                     NDFPYEPLIGNGPSSDTILWSALSLINLLAGVGLILFFFGRFNYLGWRRSKEMLPPRL
                     IAGNPTPIERSSIKFFLVAIILLLFQTFAGGAMSHYFADPNGFFGFDLTTLFPSNVLR
                     TWHLQSAILWIATAYVGGGIFISAILSKREPKGQVGLINFLFLAFGIVIFGSLLGEYL
                     GVKDLLKNLWFWFGNQGWEYLEIGRGWQYLMAVGLVIWALLLLRSVKPTRKEPEEMEL
                     KTLFLLAAFSIPFFYIPAFFFGSTTNYSTVDTWRFWIIHLWVEGFFEVFATVMVAIMF
                     FKLGLVAKQTATRIIYLDAVLFLGAGILGTGHHWYWNGQTAVSMAISASFSALEVVPL
                     ILLTLEASDFGRLMRVKTDEKGNEIDFPHKWTFYFLIAVGVWNFVGAGIFGFLINLPV
                     ISYYETGTNLTPNHGHAALMGVFGMLAIAFIIFALRQISSTEHWRKIEKYVKVSFWGL
                     NIGLAGMVIMQLFPSGVLQLLDVIHNGYWHARSTEFSAQQHIIKLAWLRLPADLIFII
                     TGVLPLLIAVVYTYVNMLKAKGTKN"
     gene            complement(2744..>3661)
                     /locus_tag="VI413_06550"
     CDS             complement(2744..>3661)
                     /locus_tag="VI413_06550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 10 glycosylhydrolase"
                     /protein_id="HEY6914318.1"
                     /translation="EEFPDEAAFRANPRGFAPNQKDDWRRNNVNLVISELQQTIKSIK
                     PWVEFGISPFGVWRNNNVDPRGSATKAGVQNYDDLYADILKWLKEGTIDYVVPQLYWE
                     IGKKVADYEVLAKWWSDNSFGKNLYIGLYASQLGSPDAAPAWRKGNELCRQLKMNMNY
                     PQIDGAVYFSAKPFLKNKQGLNDSLQSNYYKYPAICPVNRNIKGEASAQPQNIRIIKD
                     GKEAFLIWDEVNEEGGCQVAYYVVYAFKGNKVGDLNDPSNIIARTTDNCLELDTLNRK
                     FKGRFAFVVTAVNRYKQESTPTFGITRRM"
BASE COUNT          992 a          723 c          763 g         1183 t
ORIGIN      
        1 cgttgaatct cctattcaat gatcataagt gtatgattaa tgaaatgcag atcaataaat
       61 tcaaatataa taccctgtta tccagtaatt aaataaaact ttattgattc tttttttgtt
      121 atattaaaga tttgaatttt caaaaatttg aagaaagtca gttgtatcag tagttgtggc
      181 ataataaacc gtatagtttc aaagctaata aagctttttt aagcttatta taatacgttt
      241 ccctgaattc gtgaggatgg tgaataaaag acaggaaacc tctttcgtag ataccggcaa
      301 agtgtactat taagtttaac taaccaaata ctgactttta tggaaacatc gcacgattac
      361 cctgaaaacc aaaaattatc tccctggtgg agacgaggat tagtaattat cctgcttctt
      421 gagtttgcaa cgcttatatg ggtgacaacc ggcagctact accggaagtc acaacctccc
      481 atccccgaac aagtaaccga cagtaccggc ttggttgtat ttactaaaat tgatattgag
      541 gccggacaac aagtgttcct gaaaaaaggt cttatgaaca atgggagcat ctgggggcac
      601 ggtgcttata tgggtccgga ttattccgct cagtaccttc ataatctggc gatagaggtt
      661 cgaaatcaaa ttgcgttaga aaaatttaaa agaggctatt caaacttaac aagtgaccag
      721 aaagagtcgt tggtgggctt gacacgtgat tttcttatca aaaaccgcta taatccggat
      781 agtcgtacgc tttattttac aaaagttgaa ataaattcat tcaatgccca aatcagttat
      841 tggaaagatt attttcaaaa accatctaca aaccttggat tgcctaaaac gttgattgta
      901 aatcaggatg aattaaggca actgacttcc ttttttgcct gggccgcctg ggcttcagta
      961 gctaatcaac caacaaaaaa ctactcctat accaacgatt ttccgtatga acctttaatc
     1021 gggaacggac cttcaagcga cactatattg tggagcgcct tgagtctgat taatttgttg
     1081 gcaggtgttg gccttatatt gtttttcttc ggccggttta attacctggg atggcgaagg
     1141 tctaaagaaa tgcttccgcc ccggttaata gcgggaaatc cgactccaat tgagcggtca
     1201 tccataaaat tctttcttgt agctatcatt ttacttttat tccaaacctt tgcaggtgga
     1261 gctatgtcgc attattttgc agatccgaat ggatttttcg gatttgacct gactacactt
     1321 ttcccctcta atgttctccg gacatggcat ttgcaatctg ctattctctg gattgctact
     1381 gcttatgtgg gtggaggaat tttcatttcc gcgatattat caaaacgaga gcctaaaggc
     1441 caggtgggcc tgataaattt cctgttttta gcctttggaa tagtcatatt cggcagtctc
     1501 ctcggagaat accttggtgt gaaagatttg ttgaaaaatt tatggttctg gttcggaaac
     1561 cagggttggg agtatctgga aataggccgt ggctggcaat atttgatggc tgttggtttg
     1621 gttatatggg cattactgct tcttcgatct gtaaaaccaa caaggaaaga gcctgaagag
     1681 atggaactga aaacgctgtt tttgttagct gctttctcca ttcctttctt ttatattccg
     1741 gctttcttct ttggttcaac aaccaactat tcaacagttg atacctggcg gttctggatt
     1801 attcatcttt gggttgaagg atttttcgaa gtatttgcaa cagtaatggt ggccatcatg
     1861 tttttcaagc tggggttggt ggcaaagcaa actgctacac gcattattta tctggatgct
     1921 gtcttgtttt tgggtgccgg gatattggga accggacatc actggtactg gaatgggcaa
     1981 acagctgtat cgatggctat ttcggcttca ttttctgcat tggaagtggt tccattaatt
     2041 ctccttacgc ttgaagcttc cgattttggc aggctaatgc gagttaagac cgatgaaaaa
     2101 ggaaatgaaa ttgattttcc gcataagtgg actttttatt ttttaattgc agtgggtgtc
     2161 tggaattttg tgggtgcggg aatttttggt ttcttaatta atcttccggt aataagctat
     2221 tatgaaaccg gaactaacct cacaccaaat catgggcatg cggctttaat gggtgtgttt
     2281 ggcatgttgg caattgcatt tatcatattt gcgctgcggc aaatttcttc aaccgaacat
     2341 tggcgcaaaa ttgaaaagta cgtaaaagtt tcattttggg gtctaaatat cggcttggct
     2401 ggaatggtta taatgcaact attccccagt ggagttttac aattgctgga tgtaattcat
     2461 aacggatact ggcacgcccg cagcacagaa ttttcagcac aacaacacat cattaaactg
     2521 gcgtggctgc ggttgcctgc cgacctgata tttattatta ccggggttct gcctctttta
     2581 attgcagtag tctacaccta cgttaatatg ctaaaagcaa agggaacaaa aaactaaaaa
     2641 cagaaaagca atttttcgtt gaatgactga ttcatttatc agaatagaaa cggccggaat
     2701 cttttgattc cgaccgtttt cataagcaaa tatctttttg aaattacatt cttcttgtta
     2761 ttccgaaagt aggtgtgctt tcttgtttat agcgattcac tgctgttacc acaaaggcaa
     2821 aacgtccttt gaatttccgg tttagtgtat ccagttcaag gcaattgtct gtagtccgcg
     2881 caataatatt cgacgggtcg ttcaagtcgc ccaccttgtt tcctttaaac gcatacacta
     2941 cgtaataggc tacctggcaa ccgccttctt cgtttacttc gtcccatatc agaaaagctt
     3001 ctttgccatc ttttataatg cggatatttt gcggttgggc agaagcttca cccttaatgt
     3061 tgcggttaac cggacaaata gctggatatt tataataatt cgattgcagg ctgtcgttga
     3121 gtccttgttt gtttttcaga aatggcttgg cactaaaata aacagcacca tcaatttgcg
     3181 ggtagttcat gttcattttc agctggcggc acagttcatt tccttttctc caggccggtg
     3241 ctgcatccgg cgagcccagt tgcgaagcat aaagcccgat atacaggttt tttccaaatg
     3301 aattatcgct ccaccatttt gccagtactt cataatcggc cactttttta ccaatttccc
     3361 agtatagctg gggaactaca tagtcgatag ttccttcttt gagccatttc agaatgtcgg
     3421 catataaatc gtcgtagttt tgcactccgg cctttgttgc cgagccacgt ggatctacat
     3481 tgttattccg ccaaacacca aatggcgaaa taccgaattc cacccaaggt ttaatgcttt
     3541 ttatggtttg ttgcaattcg gaaataacca gattcacatt attccggcgc caatcgtctt
     3601 tttgatttgg agcaaaacca cgtggattgg ccctgaatgc tgcttcgtca gggaattctt
     3661 c
//
LOCUS       DATDNM010000391         2114 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_689330, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000391 DATDNM010000000
VERSION     DATDNM010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_689330"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..651
                     /locus_tag="VI413_06555"
     CDS             <1..651
                     /locus_tag="VI413_06555"
                     /inference="COORDINATES: protein motif:HMM:NF014037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mut7-C RNAse domain-containing protein"
                     /protein_id="HEY6914319.1"
                     /translation="VKDAIEAIGIPHVEVDLILANGESVGFTHRLENQDYISVYPLFK
                     TLDISEDLRLQKRHAGNPKFILDVHLGKLARYMRLLGFDTLYNNTNDDPEIIRIAFSE
                     QRIILTRDIGLLKVKTVSQGYWIRNQQPKAQLTEVLNHFDLYGFINPFSRCVKCNGIV
                     VKVAKDSIIEQLEPLTIKYFHDFYRCKGCGSIFWEGSHFDKMTEFIKNIKQQKLFP"
     gene            845..1756
                     /locus_tag="VI413_06560"
     CDS             845..1756
                     /locus_tag="VI413_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEY6914320.1"
                     /translation="MPHDHHNHNHHDHHHHSDVKNIKVAFLLNLFFTIVEIIGGFLTN
                     SIAILSDAIHDLGDCLSLGLAWYFQKVAKKGSDTSYSYGYKRFSLLGAVINSIVLVSG
                     SILILTVAIPRIIHPVEANTKGMFLLAILGVLVNGAAVFRLKKGNSINERVVSLHLLE
                     DVLGWMAILIGAVVMHFFDVPVLDPIMSVGIACFVLYNVFKNIRQSLRIILQGIPAEV
                     DITSVSEHLQQFEGVDNVHDLHVWSVDGNYNVLTVHVVLNNSLDMEKLAELKAQIRDS
                     LQEKGIQHATIEFETVDERCSFEKCCE"
     gene            complement(1880..1966)
                     /locus_tag="VI413_06565"
     tRNA            complement(1880..1966)
                     /locus_tag="VI413_06565"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1930..1932),aa:Leu,seq:gag)
     gene            complement(1996..2080)
                     /locus_tag="VI413_06570"
     tRNA            complement(1996..2080)
                     /locus_tag="VI413_06570"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2044..2046),aa:Leu,seq:cag)
BASE COUNT          679 a          429 c          412 g          594 t
ORIGIN      
        1 gtcaaagatg ccattgaagc cattggcata ccacatgtgg aggtggatct gatacttgcg
       61 aatggcgagt ccgtcggttt tactcaccgg cttgaaaacc aagattacat atccgtttac
      121 cctttattca agacgctgga tatttcggag gatctcagat tacaaaagcg tcatgcaggc
      181 aatccaaaat ttattctcga cgtccatttg ggaaaactgg ccagatacat gcgtctgctt
      241 ggtttcgaca cattatacaa caatacgaat gacgatcccg aaattatccg catagcgttt
      301 tccgaacagc gtatcatcct tacacgtgat atcggattgc tcaaggtaaa aacagtttca
      361 caaggctatt ggatccgcaa ccagcaaccc aaagcacaac taacagaagt attaaaccac
      421 tttgatttat atggttttat caatccgttt agtaggtgtg tgaaatgtaa tggtatcgtg
      481 gtgaaggtag caaaagattc cattattgaa caactagaac cactgaccat aaagtatttc
      541 catgattttt accgttgtaa gggttgtggc agcatttttt gggaaggatc acatttcgac
      601 aaaatgactg aatttataaa aaacataaaa caacaaaaac tcttccctta aagcagaata
      661 gttaattaag acgaacatta tggtatattt taccatagtt ctgacaagtc atttatcgaa
      721 acaaaaaaaa tagactattt ttacacccga taaacacatt aaacaaccaa cttcgtccaa
      781 acacttttcg caaaaaaacc gaacagttca ggttataaat tgttcgatac ttaaaataca
      841 aaacatgcca cacgatcatc acaatcataa tcaccatgac catcaccatc attcggatgt
      901 aaaaaatatc aaagtagctt tcctgctaaa tttatttttc accattgttg aaatcatcgg
      961 cggtttctta accaatagta tcgccattct gtccgacgcc attcatgatt tgggcgattg
     1021 cttgtcgctc ggactggcat ggtactttca gaaagtggca aaaaaaggca gcgacacctc
     1081 ctactcctac gggtacaaac gtttttcgtt actgggagcc gttatcaatt ccattgtact
     1141 tgtttcagga agtattttaa tactcacagt tgctattcca cgaataatac atccggttga
     1201 agccaatacg aaagggatgt ttttgttagc cattttaggt gttttggtaa atggagcagc
     1261 cgttttccga ctaaagaaag gcaattcaat caacgaaaga gtggtttcac ttcatttgct
     1321 cgaagatgta ttgggctgga tggctatcct tattggcgca gtggttatgc acttcttcga
     1381 cgttcccgtg ctcgacccta ttatgtcggt tggtattgcc tgctttgtgt tgtataatgt
     1441 atttaaaaac atacgacaga gcttacgcat tatcctgcaa ggcattcccg cagaagtaga
     1501 tattacgtct gtttcggaac atctgcaaca gtttgaagga gttgataatg tgcatgattt
     1561 gcacgtttgg tcggtggacg ggaactacaa tgtattgact gtccacgtag tattgaataa
     1621 ttcgctggac atggaaaaac tggctgaatt aaaagctcaa atccgtgatt cgttacaaga
     1681 aaaagggatt caacatgcaa caatagaatt cgaaacggtt gatgaacgat gtagttttga
     1741 gaagtgctgc gaataaatag aagtaagagg caagaagtaa gccctaagaa tatttcatcc
     1801 tgaaaagaac taaattttat cggtatatat caacaaaaaa gagtttctcc caatacggaa
     1861 gaaactcttt tttgttgatt ggtgcgcaga atgagactcg aactcacaca ccgtaaccgg
     1921 cactaccccc tcaaagtagc gtgtctacca atttcaccat ctgcgcaaaa tgtaagttga
     1981 gggaaatcaa tcttgtggta cccaaagcga gactcgaact cgcacagccg aagccacatg
     2041 tccctgaaac atgcgtgtct accaattcca ccatttgggc aattaataaa aaacaacttt
     2101 agagaaaaaa agcg
//
LOCUS       DATDNM010000392         3386 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_263301, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000392 DATDNM010000000
VERSION     DATDNM010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3386
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263301"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..348
                     /locus_tag="VI413_06575"
     CDS             <1..348
                     /locus_tag="VI413_06575"
                     /inference="COORDINATES: protein motif:HMM:NF021143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FISUMP domain-containing protein"
                     /protein_id="HEY6914321.1"
                     /translation="LINYLAANMGVSKSAAQALAAKPDWRESTIPDAVGCLDPDTYSS
                     LNNSSGFCALPAGGRFIYGEFNNIADYSGWWTSNGNDKNTAWFRSLNYYSATIGRNTT
                     DKQYGLSVRCVKD"
     gene            565..1005
                     /locus_tag="VI413_06580"
     CDS             565..1005
                     /locus_tag="VI413_06580"
                     /inference="COORDINATES: protein motif:HMM:NF017853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HEY6914322.1"
                     /translation="MLENLINLVKENAKQAIIDNPAIPNEQNDAACETAATSIFGSLK
                     NMVSNGGLESVTQLFSNNGENQSTVVNEISGNVAGELMNKFGLENSAANGIVQSLIPT
                     VIGQLTSKTNDPNDNSFDLKSIVGSLTDGDDGGILGKLKGLVGL"
     gene            complement(1055..3055)
                     /gene="uvrB"
                     /locus_tag="VI413_06585"
     CDS             complement(1055..3055)
                     /gene="uvrB"
                     /locus_tag="VI413_06585"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEY6914323.1"
                     /translation="MAFKLISPYRPTGDQPEAIKQLVEGLNADIPFQTLLGVTGSGKT
                     FSIANVVEQVQRPTLVLSHNKTLAAQLYSEFKNFFPENAIEYFVSYYDYYQPEAYLPV
                     SDTYIEKDLSINQEIEKLRLATTSALLSGRRDVLVVSSVSCLYGIGNPDDFTSNVIEV
                     YRGQKIVRNDFLRSLVDSLYTRNEIELNRGNFRVKGDTVDIFLAYSDYILRVVFWGDE
                     IDEIMTVEPVNLHVLNHFDAYNIYPASIFVTTKERIANAIQHIEVDLARQVDYFRSIG
                     KNYEAKRIYERVNYDLEMIKELGYCSGIENYSRYFDGRAPGSRPFCLLDYFPKDFLMV
                     IDESHVTISQIRAMFGGDAARKQNLVEYGFRLPSAKDNRPLQFEEFEQLAPQTIYVSA
                     TPADYELEKSEGIVIDQLIRPTGLLDPIIDVRPSLNQIDDLLEEITLRTERDERTLVT
                     TLTKRMAEELTDYLMKMNVRCNYIHSDVDTLDRVQILEDLRRGMYDVLVGVNLLREGL
                     DLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARNLNGRVIMYADKITESMAKTISET
                     NRRREKQLAYNEAHGITPTAINKGERNSFSKAEPNAYIEPDTTQAIAADPVVQYMSHS
                     ALEKAIAKTKKAMQEAAKKLEFLEAAQLRDELIKLEDLLKTK"
     gene            complement(3143..3334)
                     /locus_tag="VI413_06590"
     CDS             complement(3143..3334)
                     /locus_tag="VI413_06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0080135 - regulation of cellular response
                     to stress [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEY6914324.1"
                     /translation="MDKKLKRSKDQMIAGVCAGIAEYFNLDKTLVRVLYVILAVFSAG
                     FPGLLLYIILWLIMPLNEE"
BASE COUNT         1027 a          774 c          665 g          920 t
ORIGIN      
        1 ttaatcaact atctggctgc caatatgggg gtatcaaaat cggcagcgca agccctggct
       61 gcaaaacccg actggcggga atcaaccatt cctgacgctg tgggttgcct cgatccggac
      121 acttactctt cgttgaacaa ttcctccggt ttctgtgctt tacctgccgg agggcgtttt
      181 atctatggcg aattcaataa catagccgac tatagcggtt ggtggacctc aaacgggaat
      241 gataaaaata cagcctggtt cagaagcctg aattactaca gtgcaaccat tgggcggaat
      301 acaaccgaca aacagtatgg tttatcggta agatgtgtga aagattaaag aattaccata
      361 ctggctggta agttacaaag tcaccagtaa tcaatactgc cagagaaccg cctcattttt
      421 tttatacacc ccgttggcaa aactctggga acaaggaagt acaatcgcaa aacaactcaa
      481 acaaatactg ataaatattg ttttatagtt cgtagcaaga ttctcatttt gtcaactgaa
      541 tattaaccta taaaacaaat tactatgctg gaaaatctga tcaatctggt aaaagaaaat
      601 gcaaaacaag caattatcga caacccagca attccaaacg agcaaaatga tgcagcatgc
      661 gaaactgctg caacttcaat ttttggcagt ttaaaaaaca tggtgagcaa tggcggactc
      721 gaaagtgtta ctcagctatt cagcaacaat ggtgaaaacc agagtaccgt tgtcaatgaa
      781 atttcaggta atgttgccgg agaactaatg aataaatttg gtttggaaaa cagtgctgcc
      841 aatggaatcg ttcaatcact tatccctact gttattgggc agttaacttc caaaaccaac
      901 gacccaaacg ataacagttt cgatctgaaa agtattgttg gttcattaac agatggtgat
      961 gacggcggaa ttttaggcaa actaaaaggg cttgtcggat tataaaaact tattacaaat
     1021 aaaatcaccg ctccatcgaa ggaacggtga ttttttattt tgtcttcagc aagtcttcca
     1081 gtttaattaa ctcatctcgt aactgggcag cttccagaaa ttcgagcttt ttagcggctt
     1141 cctgcatggc ttttttagtt ttggcaatgg ctttttccaa agcggaatgc gacatatact
     1201 gcaccaccgg atcggctgca atggcctgcg tagtatccgg ttcaatatag gcatttggtt
     1261 ctgctttgct gaatgaatta cgttctcctt tatttatggc ggttggcgta atgccatgag
     1321 cttcgttata agccagttgt ttctcgcgcc gacggttcgt ctccgaaatg gtttttgcca
     1381 tactttcggt aattttatcg gcatacataa ttacccgtcc attcaggtta cgggcagcgc
     1441 gacccgctgt ttgtgtcaac gaacggtgcg aacgcaaaaa cccttcttta tcagcatcca
     1501 aaatggccac caatgaaact tcgggtaaat ccaatccttc acgcagcaag tttacaccca
     1561 ccaacacatc atacatgccg cggcgcaaat cttccagaat ctgcacgcgg tccagcgtat
     1621 caacatccga gtgtatatag ttgcaacgta cgttcatttt catcagatag tcggtcaatt
     1681 cctccgccat gcgctttgtc agggtggtaa ccagcgtacg ttcatcccgc tcggttcgca
     1741 gcgtaatttc ttccagcaaa tcgtctatct ggttcagact cggacgcaca tcaataatcg
     1801 gatcgagcaa accagtcggg cgaatcaact gatcgatcac gattccttca cttttttcca
     1861 gctcatagtc ggccggagta gcactaacgt aaatggtttg cggagccagt tgttcaaatt
     1921 cttcgaactg taacggtcgg ttatctttag ccgaaggcaa gcgaaaacca tactctacaa
     1981 gattttgctt acgggcagca tcaccaccaa acatcgcacg gatttgtgag atggttacgt
     2041 gactttcatc gataaccata aggaaatctt tcgggaaata atcgagcaga cagaacggac
     2101 ggctacccgg agcacgacca tcaaaatagc gggaataatt ttcaattcca gagcaataac
     2161 caagttcctt gatcatttcc aaatcgtaat tcactcgctc gtaaattcgc ttggcttcgt
     2221 agtttttacc aatagacctg aaataatcca cctgtctggc caaatcaact tcaatatgct
     2281 gaatggcatt ggcaatacgc tctttggtcg ttacaaaaat gctggccggg tagatattat
     2341 aggcgtcaaa atgattgagc acatgtaaat ttacaggctc aacggtcatg atttcgtcaa
     2401 tttcgtcacc ccagaacacc acccgcaaaa tataatcaga ataggccagg aaaatatcca
     2461 ccgtatcgcc ttttacccga aaattcccgc gattcagctc tatctcattt cgtgtgtaca
     2521 aactatccac cagcgacctc agaaaatcat tccggacaat cttctggcca cggtaaactt
     2581 caataacatt gcttgtaaaa tcatccggat ttccaattcc gtacaaacaa gaaacagacg
     2641 acacaaccag cacatccctc ctacccgaca ataatgctga tgtagtagcc agtcggagtt
     2701 tttcaatttc ctggttaatg gacaaatctt tttcgatata cgtatccgaa accggcagat
     2761 atgcttccgg ttggtaataa tcgtaataag acacgaaata ttctatcgca ttttcgggaa
     2821 aaaagttctt aaactcgcta taaagctgcg ctgccagcgt tttattatga ctcagcacca
     2881 aggtcggacg ctgaacctgt tccaccacat tggcaatgga aaatgtttta cccgagccgg
     2941 ttactcccag caaagtttga aatggtatat ccgcgttcag cccttctacc aattgcttga
     3001 tagcttcagg ttgatcgcct gtaggacgat agggtgaaat aagtttaaaa gccacaatgt
     3061 ttcagttatc agttatcttt gaacaggtat aaagtgaaac aactaacgat ttaaacggtt
     3121 tcacggttca ataaaacaag tattattctt cgttcaaggg cattattaac caaagaataa
     3181 tgtaaagcaa caacccaggg aagcctgctg aaaaaacagc caaaataaca taaagtactc
     3241 tcacaagggt tttgtccaaa ttaaaatact cagcaatacc ggcacatacg cccgctatca
     3301 tctgatcctt agaacgtttt agtttcttgt ccataattgt atgtatttat gatttatcca
     3361 caaagaaaca aaaaaagact gagact
//
LOCUS       DATDNM010000393         8347 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1864888, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000393 DATDNM010000000
VERSION     DATDNM010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 8347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8347
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1864888"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..585
                     /locus_tag="VI413_06595"
     CDS             <1..585
                     /locus_tag="VI413_06595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009127395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP binding domain-containing protein"
                     /protein_id="HEY6914325.1"
                     /translation="FLYAGCGYGGSCFPKDVKALIQTADQKGYELRVLKAVEEVNASQ
                     KQVLYHKLEKHFNGSIGDKTICIWGLSFKPNTDDMREAPSLVLIEKLLKAGCKVRVFD
                     PVAMHEAKVIINSKMASLIDSDSNNLYFAHDIYDAVLDADALLLVTEWKEFRMPSWGV
                     VKKSMKGSLILDGRNIYDKNEMKEVGFEYDAIGY"
     gene            831..1736
                     /locus_tag="VI413_06600"
     CDS             831..1736
                     /locus_tag="VI413_06600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEY6914326.1"
                     /translation="MLQEKKKVALASVIAAVFITGFKLIIGLLTGSLGIISEALHSGL
                     DMVAAVITYFSVRVSDKPADREHNYGHGKVENLSALVETILLLVTCVWIIYEAVHRLT
                     SGETKIEVSIWSYVVVISSIIIDYTRSRALYKVARKHNSQALEADALHFSTDIWSSSV
                     VLFGLIAYQFLGWYAADSIAALFVAVIVLYVSYQLGRKAIDVLLDKSPQNTTQIVREI
                     LKTYPEVLKYHGLKARTAGADTFIKFNVHFNPDLSLREVHEVCDKIEAEIQSQIARSE
                     VYIHAEPEDACHLEGEANQVNNENF"
     gene            1901..3001
                     /locus_tag="VI413_06605"
     CDS             1901..3001
                     /locus_tag="VI413_06605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914327.1"
                     /translation="MKTKSFYVVILLISILGWSCSNNDLNQGTLKSSLNQSVQELTTA
                     LNVISSSNGYQVLSTPTVTDNTASMVKSSVLSFDSTYNSILLADIAGVYDYKATYKRG
                     SMSAFRFFTKTAESTHMIVRLPEEKVKNPRVLLHFTPADTMLTNNYVIDLSKYEYHFN
                     RYLGWDYQMASTINIKNVDAGALAIQSSNSRMSGYKYASEFVFTDGYKASCSYASGDT
                     AVATYAVSDGTKTLYAEKYTAIKTSGDNRHREKEYSLTIGNVEIVRERNHHNNVLDSA
                     KVYVDGVLQVNAKIEIVDVDSATTDGTENCVINHKRDLKITFDDGTSTTISELLGTSV
                     TTIRNLFAALRQASFATNIVDWIAWDIYTSRD"
     gene            3136..4290
                     /locus_tag="VI413_06610"
     CDS             3136..4290
                     /locus_tag="VI413_06610"
                     /inference="COORDINATES: protein motif:HMM:NF025854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEY6914328.1"
                     /translation="MKYVQNKTVNFNYLESIIYLVIWLVIFSVPFFQHRNLNTVDWEK
                     VGMEWIRMSSFCIIFVLNGFVLVPKLLFQKKYLPYLGVTLLSLLLVVGLSIALQVYLT
                     PPEPISMPKMELGPGMPPMELGSKMPAPMGYRAPEPTEQKSIFMIFTDNLIIAFLVVA
                     AGTTIKLLSQWLNEEGRRKDVEKEQLKTEIALLRHQVSPHFFMNTLNNIHALIDINTE
                     TAKDAVIRLSTLMRYLLYDTAQGQTSLKKEMEFIESYITLMQLRYSKKVKISVDIPKN
                     IPDIQIPPMLFISFVENAFKHGVSYQAESFVDFKLKIDDYQLNCFIKNSKHKNKEKFD
                     KSYSGIGLANIKKSLELLFNKNYSLNIHENDKEFEVQLTIPVYENKMYSH"
     gene            4271..4984
                     /locus_tag="VI413_06615"
     CDS             4271..4984
                     /locus_tag="VI413_06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004370055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEY6914329.1"
                     /translation="MRCIAIDDEPLALEQISSYIQKTPFLESVALCQSAYEAMEYLAN
                     DDVDLMFVDINMPDINGMDFVKSLKQRPQVIFTTAYSEYAIEGFQVDALDYILKPISY
                     TGFLKAANKAKTWFDLNKKQTESIQTTQDCLFVKSEYKLVRIILDDIKYIESANEYIQ
                     IHLINEEPVSTLIRLKVIEEQLPKDKFMRVHRSFIVNLNRVKVIDRNRIVFDNKVHIP
                     IGDQYKETFQAFIDKAFLI"
     gene            5198..5440
                     /locus_tag="VI413_06620"
     CDS             5198..5440
                     /locus_tag="VI413_06620"
                     /inference="COORDINATES: protein motif:HMM:NF017239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HEY6914330.1"
                     /translation="MKLKKNIATSEEGFIFNPTTGDSFSTNPIGTDILGLLKEEKTLP
                     EVIESICSKYDVEPIQFERDLDDFVSQLKDYYILDL"
     gene            5442..6518
                     /locus_tag="VI413_06625"
     CDS             5442..6518
                     /locus_tag="VI413_06625"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEY6914331.1"
                     /translation="MANHPKDMTNTGTKKIVIAVTALNAIDSPGPGVAVIRAIRECKD
                     FEVRIIGLSYESLEPGIYMHDLVDKTYQIPYPSGGTDSLLGRLLHIHEIEHIDIIIPN
                     FDSELFNFIKLRDKLTKLGIHTFLPDLNQFESRDKIKLYEFGKKHGLMVPADKIIHQA
                     KDLEKATEAIGFPLLIKGKFYDAIIVNTLEQAQKAFYQIQAKWGLPIIVQEFINGTEI
                     NIAALGDGEGNAISIVPMRKLYITDKGKAWAGITLDDDNYIELARKFISVTKWRGGCE
                     LEVMQTSAGKSYILEVNPRFPAWIYLTAAAGQNQPAALVKMALGQKIEPFTKYEVGKI
                     FVRYAWDLITNISEFQKISGTGEL"
     gene            6559..7905
                     /locus_tag="VI413_06630"
     CDS             6559..7905
                     /locus_tag="VI413_06630"
                     /inference="COORDINATES: protein motif:HMM:NF014803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914332.1"
                     /translation="MKKVKYERPIILKMNTGLMNKFGTRTEYEPVTNIESVPVKNLLN
                     DYGSPLFVISEKQIRRSFQNASRIFKTRYPKIQFAWSYKTNYINAVCRIFHQEGSWAE
                     VVSGFEYEKALGNGVPGNKIIFNGPIKTDEELIRAAQNGSLIHIDHYDELYTLIRLSE
                     ENKLKPRVAIRVNMDTGVYPKWDRFGFNYENGQAWNAITRIINSENLELVGLHCHIGT
                     FMLSPETYKIAATRLCELAWSLKEKFNKVIQYLDLGGGFPSTNTLKGAYLPGSDTVPS
                     IDQFADAITDVILGYGFKQEDLPLLILETGRALIDDAGFLLGTVLATKRLSDGRRATV
                     LDFGVNSLFTSFWYEHKISPAQAFGDYTEEMVLYGPLCMNIDVIRESVTLPPLEKGNQ
                     VVVHKVGAYNMTQWMQFITLRPNVVLIDNENNTHIIRKAETLEYLETLEELPEHLK"
     gene            7933..>8347
                     /locus_tag="VI413_06635"
     CDS             7933..>8347
                     /locus_tag="VI413_06635"
                     /inference="COORDINATES: protein motif:HMM:NF015226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015204 - urea transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071918 - urea transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea transporter"
                     /protein_id="HEY6914333.1"
                     /translation="MFKRATHTFRTIILPAVLNSYSVIFFFNNKLLACVLMLVTFFNF
                     FAGLSGLIAVLISVLIAYAMDLDRFQLKKGLFSFNALLLGIGMGTFFDPSPVFFSLLA
                     LAALLTLILTVTFGGWLNKYNLPVLSIPFVFSFWFI"
BASE COUNT         2668 a         1554 c         1646 g         2479 t
ORIGIN      
        1 ttcctgtatg ccggttgtgg ctatggtggc tcttgtttcc caaaggatgt gaaagcattg
       61 atacaaacag ccgatcagaa aggatatgaa ttgcgtgtct tgaaagctgt agaagaagtg
      121 aatgcttccc aaaaacaggt gttatatcac aagttagaaa aacactttaa tggaagtatt
      181 ggcgataaaa ctatctgtat ctggggattg tcattcaagc caaacaccga cgatatgcgt
      241 gaagctccat cgttggtatt aattgaaaaa ctcttgaaag caggctgtaa agtcagggtt
      301 tttgatccgg tagcgatgca tgaagctaaa gtaattatca attcaaaaat ggcttcgctg
      361 attgattcag attcaaacaa cctttacttt gcacatgata tttatgatgc tgtgttagat
      421 gctgatgcac ttttacttgt tactgagtgg aaagaatttc gcatgccaag ctggggtgtt
      481 gtaaaaaaat caatgaaagg gtctttgatt cttgacggca gaaacatcta cgataaaaat
      541 gagatgaaag aagttggatt tgaatatgat gcaatcggat attaatttca ggaatcctga
      601 ataattgaaa ttttaaagag ttgccaggaa taacctgagc aactcttttt ctttaaacaa
      661 cagatcattt ttttatccgg attgcgaatt ttataatttt ttccaacaag cacaaatttg
      721 tttcattcta aattaagccg ctggtaataa gttcctttgt tttttgcagt aagaattaaa
      781 tagtttgctt atttttgaca acattttatc atatacctat ataaattatt atgttacaag
      841 agaaaaagaa agttgcatta gcctcggtca tcgcagccgt gttcattacg ggatttaaat
      901 taatcatagg tctgctaaca ggcagtttgg gtattatatc agaagcactg cactccgggt
      961 tagacatggt tgcagctgtc ataacatatt tttcagtcag agtatctgac aaaccagctg
     1021 acagagagca caattatgga catggaaaag tagaaaatct ctctgccctg gttgaaacca
     1081 tattattact ggtaacttgt gtttggatta tttacgaagc agttcaccgc cttacttccg
     1141 gcgaaacaaa aattgaagtt tctatctgga gttatgtcgt tgttataagt tccatcataa
     1201 tcgattatac gcgttccaga gctttgtaca aagtagcaag aaaacacaat agccaggcat
     1261 tggaagccga tgcactgcac ttttcaacgg atatttggag ctcttctgtc gttttattcg
     1321 gattaattgc ctatcagttt ttgggttggt atgcagccga ctctatagca gcattgttcg
     1381 ttgcagtcat cgtgctttat gtttcatacc agcttggtcg taaagccatt gatgttttac
     1441 tcgacaaatc acctcaaaat acaacacaaa ttgttcgcga aatcctgaaa acatatcctg
     1501 aagtactaaa atatcatgga ttgaaagccc gaactgcagg ggctgatacc tttataaaat
     1561 ttaatgtaca tttcaatcct gatttaagct tacgtgaagt acatgaggtt tgcgataaaa
     1621 ttgaagctga aatccagtcg caaattgcac gcagtgaagt atatatacat gccgaaccgg
     1681 aggatgcatg ccatctcgaa ggtgaagcaa accaagttaa caatgaaaac ttttaagtag
     1741 aggtcagttg aataagaaag acagtattta tacttataaa tctagtcctt tcactgaatc
     1801 tttttgtgat attagttgtt caaatatata tttgtatgtt cattccaaag taaaaggaat
     1861 caaccggaaa ataaattatt tcaactaaaa caaatagggt atgaaaacaa aaagctttta
     1921 tgtagttata cttttaataa gtattcttgg ttggagttgc tccaataatg atttgaatca
     1981 gggcacatta aaaagttctt taaaccaaag cgttcaggag cttacaactg cactgaatgt
     2041 gatttcttct tcgaatggct atcaggtttt atcaacacca actgttacag ataatactgc
     2101 cagcatggta aaatcgtcag ttttatcatt cgattctact tataacagca ttttactggc
     2161 tgatattgca ggtgtttacg attacaaagc tacatacaaa agaggttcta tgtcggcatt
     2221 ccgcttcttt accaaaacag cggaaagtac acatatgatt gttcgcttgc cggaagaaaa
     2281 agtaaagaat ccgagggttc tgctacactt tactcccgct gatacgatgt taacaaacaa
     2341 ttatgtgatt gatctttcga aatacgaata tcatttcaat cgttaccttg gttgggatta
     2401 ccagatggct tcaaccatca acattaaaaa tgttgatgct ggcgcactgg ctattcaatc
     2461 ttccaattca agaatgagcg gatacaaata tgcttcggaa tttgtgttta cagatgggta
     2521 taaggccagt tgctcttacg cttcaggcga cacagctgtt gccacttatg ctgtaagtga
     2581 cggaacaaaa acactttatg ccgaaaaata cactgctatt aaaacatccg gagataacag
     2641 acaccgtgaa aaagaatatt ctttgactat tggcaatgta gaaattgtac gcgaaagaaa
     2701 tcatcataat aacgtgttgg acagtgccaa ggtatatgta gatggtgtat tgcaggtaaa
     2761 tgcaaaaatt gaaattgtag atgtggatag cgcaacaaca gatggaaccg aaaactgtgt
     2821 aatcaaccac aaacgtgatt tgaaaatcac ctttgatgat ggaacaagca caaccatttc
     2881 ggaattgttg ggaacctcgg ttacaactat ccgcaacttg tttgctgcac tgcgtcaggc
     2941 aagctttgcc actaatattg tcgactggat tgcgtgggat atttacacca gcagggattg
     3001 aaacgatatc ctctaaaaca agattagttg cgaatacgtt taacttacat tcgtcccaac
     3061 acaaaaactg cagagaacag taaaccaaaa taaaacaggg gaagcttcac acttccccta
     3121 ttttcttaat acaaaatgaa atacgtacaa aacaaaactg taaatttcaa ctatctcgaa
     3181 tcgattattt accttgtaat ctggcttgtg attttttctg ttcctttttt tcaacacaga
     3241 aatttaaaca cggttgattg ggaaaaggta ggtatggaat ggatcaggat gtcttcattt
     3301 tgtattattt tcgttctcaa tgggtttgtt ctcgttccca aactgctatt ccagaaaaaa
     3361 tatcttcctt atcttggagt cacgctgctg tcacttttat tagtagtcgg attaagcatt
     3421 gcccttcagg tatatctcac accccccgaa cctatttcaa tgcctaaaat ggaactagga
     3481 cccggaatgc cacccatgga gttaggttca aaaatgccgg caccaatggg ttacagagcc
     3541 cccgaaccaa ccgagcaaaa atccattttc atgattttta ccgacaacct gattattgct
     3601 tttctggttg tagcagcggg taccaccatt aaattattgt ctcaatggct gaatgaagaa
     3661 ggtagacgaa aagacgtgga aaaagagcag ttgaaaacag aaattgcgtt gctacgccat
     3721 caggttagcc cacacttttt catgaatacg cttaataata tccatgcttt aatagatata
     3781 aatacagaaa ctgccaaaga tgctgttatt cgcctttcaa cattaatgcg ctatttgctg
     3841 tatgacactg cgcaaggtca aaccagccta aaaaaagaaa tggagtttat agaaagttac
     3901 attactctaa tgcagcttcg ctattcaaag aaagtaaaga tctcagtgga tattccgaaa
     3961 aacatacctg acattcagat tcctcctatg cttttcattt cgtttgtcga aaatgcattt
     4021 aaacatggag taagctatca ggcagaatcg tttgttgatt tcaaactaaa aatagatgat
     4081 tatcaactaa actgctttat caaaaacagt aagcacaaaa acaaggaaaa attcgataag
     4141 agttactccg gaatcggatt agccaacata aaaaaaagtc tggaattact tttcaacaaa
     4201 aattattcgc tcaatataca tgagaatgat aaagaatttg aagttcaact aactatcccg
     4261 gtttatgaaa ataagatgta tagccattga tgatgagccg cttgccctgg agcaaattag
     4321 ctcatatatc cagaaaacac cttttttaga gagcgtggca ctttgccaga gtgcatatga
     4381 agcaatggaa tatctggcaa atgatgatgt agacttaatg tttgtggaca ttaacatgcc
     4441 ggacatcaac ggaatggact ttgtaaaatc gctcaaacaa cgcccacagg taattttcac
     4501 aactgcttac agcgaatatg ccattgaagg atttcaggtg gatgcgcttg actacatcct
     4561 caagcccatt agttatacag gatttttgaa agcggcaaat aaagctaaaa cctggtttga
     4621 tttaaataag aaacaaacag aaagtattca aactacccag gattgcctgt tcgtaaaatc
     4681 agaatataag ctggttcgta ttatcctgga cgatatcaag tacattgaaa gtgccaatga
     4741 atacattcag attcatctga ttaatgaaga accagtatca actttaatca ggctgaaggt
     4801 tattgaagaa caattgccta aagataaatt tatgcgggtc caccgatcgt ttatcgttaa
     4861 tctgaacaga gtgaaagtca ttgaccgaaa ccggattgtt ttcgacaata aagtacatat
     4921 tcctattggc gatcaataca aagaaacatt ccaggcattt atcgacaagg cttttctgat
     4981 ttaataatcc ctaaactatt tttatactcc cactgatttc gttcataaat ccggattgat
     5041 tctgccaaaa catgaacaga ctcagtggga gaattatttt taggacagat ttagttgaaa
     5101 aatgaagtag ttctacttac atgaacctct gtttcattga aaagaattgc tatttattaa
     5161 tttattccct atctttgaac ccctacgcaa attaacaatg aaactgaaga aaaatattgc
     5221 aaccagtgaa gaaggattta ttttcaatcc tactacagga gattcatttt cgacaaatcc
     5281 aattggaaca gatattctcg ggttgctaaa agaggaaaaa acacttccgg aggtaattga
     5341 atccatttgt tcgaagtatg atgtagagcc aattcagttc gaaagagatt tggacgactt
     5401 tgtttcgcaa ttgaaggatt attatatact cgatttgtaa catggcaaac caccctaagg
     5461 atatgacaaa caccggtact aaaaaaattg tcattgctgt tacagcatta aatgcaattg
     5521 acagtccggg tcctggagtt gctgtcatcc gggccatccg ggaatgtaag gactttgaag
     5581 tccgaatcat cggtttgtca tacgagtcgc tagagccggg catttacatg cacgatttgg
     5641 tagataaaac gtatcaaatt ccttatccgt ccggcggaac cgacagttta ctcggaagat
     5701 tgttacacat acatgaaata gagcacattg acattattat tccgaatttc gactccgaac
     5761 ttttcaattt catcaaacta agggacaaac taacgaaact gggcatccat acatttcttc
     5821 ctgatttaaa ccagtttgag tcgcgtgaca aaattaaact ctacgagttt ggtaagaaac
     5881 atggattaat ggttcctgca gataaaatta ttcaccaggc taaagatttg gaaaaagcaa
     5941 ctgaagccat tggttttcca ttgctaataa aaggcaaatt ttatgatgct atcatagtta
     6001 acacccttga acaggctcag aaagcatttt accaaattca ggctaaatgg ggattaccca
     6061 ttattgtcca ggaatttata aatggaaccg aaataaacat agccgcattg ggcgatggcg
     6121 aaggaaatgc cataagcatt gttcccatgc gaaaacttta tattacagac aaaggaaaag
     6181 cctgggccgg catcacactg gacgatgaca attacattga attggcccgt aaatttattt
     6241 ctgtcaccaa atggcgtggt ggttgcgagc tggaagttat gcaaacgtct gctggcaaat
     6301 cttacatttt ggaagtaaat ccacgctttc ccgcctggat ttatctaaca gcggctgcag
     6361 ggcaaaatca accggctgca ttggtaaaaa tggcgcttgg tcaaaaaata gagcctttta
     6421 ccaaatatga agtcgggaaa atttttgtgc gttatgcatg ggatttgata accaatatct
     6481 cggaatttca aaaaatatcc ggaaccgggg aactttaatt agttggtagt tggaagaaag
     6541 tagttaagat aacaagttat gaaaaaagtc aaatatgaac gtccgattat tctgaaaatg
     6601 aataccggtt taatgaacaa attcggaaca cgaactgaat atgagccggt tacaaacata
     6661 gaaagtgtgc cggtaaaaaa tttgctgaac gactatgggt caccactgtt cgttatttcc
     6721 gaaaaacaaa tccgccgaag ttttcaaaat gcatcgcgaa ttttcaaaac ccgttatccg
     6781 aaaatacaat ttgcctggtc gtacaaaacc aattatataa atgctgtgtg ccggattttt
     6841 catcaggaag gatcctgggc tgaagtggtt tccggctttg aatacgaaaa agcacttgga
     6901 aatggtgttc cgggaaataa aattatcttt aacggcccta taaaaacaga cgaggaactt
     6961 atcagagccg cccaaaacgg ttcgctaatt catattgacc attacgatga gctctataca
     7021 ttaattcgtt taagcgaaga gaataaactg aagccacgtg ttgccatccg tgtaaatatg
     7081 gatacaggcg tttatcctaa gtgggaccgg tttggtttca attacgaaaa tggacaagcc
     7141 tggaatgcca ttacccgcat tatcaactca gaaaatcttg aactggttgg acttcattgc
     7201 catatcggca cgtttatgct ttcgcctgag acttacaaaa ttgctgcaac tcgactttgt
     7261 gaacttgcct ggagtcttaa agaaaaattc aataaagtaa ttcaatacct cgatttgggt
     7321 gggggatttc cttctaccaa cacgctcaaa ggagcttatt tacctggttc ggacactgtt
     7381 ccttccatcg accagtttgc ggatgcaatt actgatgtta ttctgggata tggcttcaaa
     7441 caagaagatc tgccattgtt gattctcgaa acaggtcgtg ccttgattga cgatgcaggt
     7501 tttttgcttg gcaccgtgtt ggccacgaaa cggctgtcgg atggacgacg ggctaccgtt
     7561 cttgattttg gtgtcaattc attgtttact tctttctggt acgagcataa aatcagtcct
     7621 gcccaggctt ttggcgatta tacggaagaa atggtgctgt atggcccgct gtgcatgaac
     7681 atcgacgtga ttcgcgaaag tgtaaccttg cccccactgg aaaaaggaaa tcaggtagtg
     7741 gtgcataaag tcggcgctta caacatgacc caatggatgc aatttattac gctgcgtcct
     7801 aacgttgtcc tcattgacaa tgaaaacaat acacatatta tcagaaaagc ggaaacactg
     7861 gaatatctgg aaacgttgga agaactgccg gaacatctga aatagtaata aatgattagt
     7921 aaataaccga agatgtttaa acgcgccaca catactttcc gaacaattat tctgcctgct
     7981 gtgctgaata gttactcggt catctttttc ttcaacaaca agttgttggc ctgcgtttta
     8041 atgctagtta cttttttcaa cttttttgcc gggttgagtg gtttgattgc tgttttgatt
     8101 tctgtcctga ttgcttatgc tatggatttg gacaggttcc agttgaagaa aggactattt
     8161 agttttaatg ctttgctgct gggtattggt atgggaacct tttttgaccc aagtccggta
     8221 tttttcagtt tgctggcact ggccgcgtta ctaactctca ttcttaccgt tacttttggg
     8281 ggttggctca acaaatacaa cttacccgta cttagcattc catttgtttt ctcattttgg
     8341 ttcatcg
//
LOCUS       DATDNM010000394         2833 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1972504, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000394 DATDNM010000000
VERSION     DATDNM010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2833
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1972504"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2833
                     /locus_tag="VI413_06640"
     CDS             <1..>2833
                     /locus_tag="VI413_06640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015546878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6914334.1"
                     /translation="AASAKKLYLDSLNVIWVATQSGLFLLDPLTSEMRHLRFNLQYTY
                     SIPNNSIWSIYPDPDGGVWIGTYGGKLAYMTFFDNNVNYFKAVPGGLNHPIVSCFEED
                     KDGNLWIGTEGGGVNYWNRKTGVTSYYTQENNTGVTSNMIKMLRYDEKKNTLRITAFN
                     GGMGEFNNAQHRFSDMHMLHPVTGKQLSIYDFAMEGNSGIWLTDPDADLMYKDLKNGT
                     VKVVSLSDSRGKPVRMQIETLFRDKGNNLWLITHNGAYIIDVNTKRIVKHYYIKAAPY
                     SVNNLSSYCITSEGDIWFGTHGGGINRLSKDGSYINFAEKDGLYGKTVFGILEDSSSK
                     NIWFTTNDGLYYYDYKTKSINKSQIDNLKLCGAFYVRSCFKTSEGEMLFGGTDGFLMF
                     TPDKIRYNNQRAKVFFTDLLINNKKVVSGTEDSPLKQDISTVSYSKDNNNKIILSHNQ
                     SNIGICVSATSYLHAEKNQYAYRMLGLSDEWNLLPPGQKTIQFFNLPAGKYRFEVKVA
                     NNDGLWGDEVSTLYFDVKPSPFFSVWAYIIYSMILTYIIYFIWRYFTNKKIFENRLEM
                     EQIKEQNMRKLTQARINFFTNISHDLKTPLTLVIDPLKQLKEYLPEDKSLNAYIQLIE
                     KNVTRIQRMISQLLQFREIESQKITFNYQAGDLVQYIREIFSLFELYANKKGIETDIN
                     TEVEEFYAKFDHDAIEKIFTNLFSNAIKYGSENGFVGVKINKTTPEAIANLSLPERTN
                     FTFVSIAVTNTGTEIPEDKKEQIFEAFNRLTTGKLAFEDSTGLGLAIVKELVTSLDGK
                     VTLHSGDSKVTFTVVLPFEMNIEKTESEVVSYEYAISEIDNVLAESEDMILLDKRSRK
                     AYSIVVVEDDPDLRTYLEQRLSESYNVYTAANGNEGIAKIEKIHPQIVITDLMMPGAT
                     GFEVCRTLRSNIKTSHIPIIVLSGLGKNTE"
BASE COUNT          944 a          467 c          591 g          831 t
ORIGIN      
        1 agcggcaagt gcaaagaagc tatatcttga ttcgttaaat gtcatttggg tggccacaca
       61 atcaggactt tttcttttag atcctcttac atcagaaatg cgccatcttc gattcaacct
      121 tcagtataca tactcaattc cgaataattc gatttggtct atttatcccg acccggatgg
      181 cggcgtatgg ataggaactt atggtggaaa gttggcttac atgacctttt tcgacaataa
      241 tgtcaactat tttaaagctg tccccggagg cctgaatcat cctatagtca gttgctttga
      301 agaagacaaa gatggcaatt tgtggatagg aacagaagga ggcggagtga attactggaa
      361 tagaaagacg ggggtaactt cgtattatac acaggaaaat aatacgggcg taacatctaa
      421 tatgattaaa atgttacgat atgatgaaaa gaagaatacg ttacgaatta ccgcattcaa
      481 tggaggaatg ggagaattca ataatgcaca acatcgtttt tccgatatgc acatgcttca
      541 tcccgttaca ggcaaacagt tgagtattta cgattttgca atggaaggta attccggcat
      601 ttggctgaca gatccggatg ctgatttaat gtataaggat ctgaaaaatg ggacagttaa
      661 agtggtttct ttgtctgatt caagaggaaa gccggttaga atgcaaatag aaacattgtt
      721 tcgtgacaaa gggaataact tatggctaat aactcataac ggagcatata tcatagatgt
      781 aaatacgaag cgtattgtaa aacattacta tataaaagct gcaccttact cggtaaacaa
      841 tcttagttct tactgtatca cttccgaagg agatatttgg tttggtacac acggcggtgg
      901 cataaacaga ttgagcaaag acggcagtta tataaacttt gcagaaaaag acggactgta
      961 tggtaaaact gttttcggta tattggagga tagttcttct aaaaacattt ggttcaccac
     1021 caatgatggg ttgtattatt atgattacaa aacgaaaagt ataaataaat ctcaaataga
     1081 taatctcaag ctttgcggag cattttatgt ccgttcatgt ttcaaaacct cagaaggtga
     1141 aatgttgttc ggaggaactg acggttttct tatgtttaca ccagacaaaa taagatataa
     1201 taatcaaagg gccaaagttt tttttacgga tttgttaatc aataataaga aggttgtatc
     1261 aggaactgaa gactctccat tgaaacagga tatatcgacc gtctcctatt caaaagacaa
     1321 taacaataaa ataatattgt cacacaacca gtcgaatata gggatttgtg tttcagcaac
     1381 cagttatctg catgccgaaa aaaatcaata tgcttatcga atgctgggac tttcggatga
     1441 atggaacctg ctgcctccgg gacaaaaaac aattcagttt ttcaacttgc ccgcaggaaa
     1501 gtataggttt gaagtcaaag ttgctaataa tgatggatta tggggggatg aagtttctac
     1561 attgtatttt gatgttaaac catcaccatt tttctctgtt tgggcgtata ttatttactc
     1621 catgatttta acgtacatta tatattttat ttggagatat tttacgaaca agaagatatt
     1681 tgagaacagg ctggaaatgg agcagataaa ggaacagaac atgaggaagc ttactcaggc
     1741 gcgcatcaac tttttcacaa acatatctca tgacctcaaa acgcctctca ctcttgttat
     1801 tgacccgtta aagcaactta aagaatattt gccggaagat aaatcgttga atgcttatat
     1861 acagcttatt gagaaaaatg ttacccgtat tcagcgaatg attagccagt tacttcaatt
     1921 cagggagata gaaagtcaaa aaataacatt taattatcag gccggggatt tggttcaata
     1981 tattcgcgag attttttcac tatttgagct ttacgctaat aaaaagggga tagaaactga
     2041 tataaacaca gaagttgagg aattttatgc caaatttgat catgatgcaa tcgagaagat
     2101 ctttactaat ttattttcta atgccataaa atatggctcg gaaaacgggt ttgttggggt
     2161 taagataaat aaaacaactc cggaagcaat tgccaaccta tccttgccgg aaagaacgaa
     2221 ttttacattc gtttctattg ccgtaaccaa caccggaact gaaattccgg aagataagaa
     2281 agaacaaata tttgaagctt tcaatcgttt gactacaggt aaacttgcat tcgaggatag
     2341 tacaggtttg gggctggcta ttgtcaaaga gttggtgacc agcttagatg ggaaggtaac
     2401 cttgcattcc ggagattcga aagttacttt tacagtagtt cttccctttg aaatgaacat
     2461 agaaaagaca gaaagcgagg tcgtttcgta cgaatatgca atttccgaaa ttgacaatgt
     2521 tctggctgaa tcagaagata tgattctgct tgacaagcgg agccgtaaag cctatagcat
     2581 tgttgttgta gaggatgatc cagatttgag gacttatttg gaacaacggt tatctgaatc
     2641 ttacaatgtt tatactgctg caaatggcaa tgagggtatt gctaaaatag agaaaattca
     2701 tccccagata gtaattacag acttaatgat gcctggggca acaggatttg aagtttgccg
     2761 gacgcttcgc tccaatatca aaacaagcca tatcccaata attgttttat cgggattggg
     2821 taaaaatacg gag
//
LOCUS       DATDNM010000395         5921 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_156928, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000395 DATDNM010000000
VERSION     DATDNM010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5921
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156928"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /locus_tag="VI413_06645"
     CDS             complement(<1..653)
                     /locus_tag="VI413_06645"
                     /EC_number="1.1.1.69"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009125517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 5-dehydrogenase"
                     /protein_id="HEY6914335.1"
                     /translation="MNQFDLTGKVALVTGASYGIGYAIACGLAKAGATIVFNDINQDL
                     VNKGIAAYESEGIKAHGYVADVTNEDQINAVVAQIATEVGEIDILVNNAGIIKRIPMH
                     EMSAAEFRQVIDIDLNGPFICAKAVIPSMMKRGAGKIINICSMMSELGRETVSAYAAA
                     KGGLKMLTKNIASEYGEFNIQCNGLGPGYIATPQTAPLRETQADGSRHPFDQFIIAKT
                     "
     gene            complement(758..1600)
                     /gene="kduI"
                     /locus_tag="VI413_06650"
     CDS             complement(758..1600)
                     /gene="kduI"
                     /locus_tag="VI413_06650"
                     /EC_number="5.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018665715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008697 -
                     4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0045490 - pectin catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxy-D-glucuronate isomerase"
                     /protein_id="HEY6914336.1"
                     /translation="MKTNYEIRYASHPQDAKGYDTARLRKEHLIEKVFSVDEVNMVYS
                     LYDRLVVGGAMPVNQVLTLEAIDPLKSDFFLSRREFGTFNVGGAGKITVDGVVFELGF
                     KEALYLGSGDRKVTFESIDPKNPAKFYFNSAPAHKTFPDRKITKADAVVAEMGSLETA
                     NHRNINKMLVCQVLETCQLQMGMTELAPGSVWNTMPAHTHSRRMEAYFYFEVPEGQAV
                     CHFMGEPTETRHIWMKGDEAVISPEWSIHSAAATSNYTFIWGMAGENLDYSDQDFYKH
                     TELR"
     gene            complement(1891..2517)
                     /locus_tag="VI413_06655"
     CDS             complement(1891..2517)
                     /locus_tag="VI413_06655"
                     /inference="COORDINATES: protein motif:HMM:NF024957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HEY6914337.1"
                     /translation="MRKNWIFIFILFSTSLIAQVRLDKPEIYVGVTAGATGSMVIFNP
                     VVAQTYLQGYNGGLVFRYIAEKNVGMQAELNFSQRGWKEANGLFTKQLNYIELPFLTH
                     IYMGKKNRFFINLGPKISYLLSEKVLVNGTTNSTETQQTTAVQNAFDYGLCGGIGFLF
                     NIKGNQLQLDTRAYYALSDIYSNNKKDYFDNSNNANLSVNLAWLIQIK"
     gene            complement(2547..4370)
                     /locus_tag="VI413_06660"
     CDS             complement(2547..4370)
                     /locus_tag="VI413_06660"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEY6914338.1"
                     /translation="MKTKLFGYLLAILLLISFSGFGQPKDYPVKKINGVEYYEYTVQA
                     SEGLFAIGRKFEISPDEISKANPEIKNGLKAGQHLLIPVQKKNQKNIFSESNSKPEFI
                     EHTVLKKQTLFAISRKYNANQDDIKKYNPEIQNGLQEGMVLKIPVQVKETRKKEAEVE
                     KAEKKASKDNKEAKKNILIHVVQPDETLYSISRQYKVDVNEIIELNPASATTLVSGTE
                     LKIPAKQGTIATATQTTSQKNNVTNGNKQDNDVNNLFDTSVLTKTSDKNKIIRIAFLL
                     PFMLDQEKKDAGIDRFVDFYQGALLAVLEAKLKGISFEIYSYDTEKSEEKLSEVLSNS
                     ELKTMDLIIGPAFSNQVSLISDYAKENRINTLIPFTSKVSDIETNPYLFQFNPGTETE
                     LSFATELFTGKYKNMNIVFAEIPGVSSMDEGKMWAAGLQKELKKANKTFSKLELTTSD
                     AADFGSVLKTDGKNLVIFNTDKFAFVSPFLNPLRVAATQYDLLLFEQYSWKNQNEKMP
                     AGIYISPFMFNVNQDKLDDYSKQFTNYFGKNSNKDLPHFDLLGYDLTSYFISIFQRYG
                     NKFSDKIGSYNFKNGLQSQPKFERISNGSGFVNQRVYLGED"
     gene            4538..5842
                     /locus_tag="VI413_06665"
     CDS             4538..5842
                     /locus_tag="VI413_06665"
                     /inference="COORDINATES: protein motif:HMM:TIGR04131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914339.1"
                     /translation="MKKIFFLFLFCLCTIYIPAQLSIKGNYQLIGQKIGKDSVSVILF
                     DTIDSETEISYAGTNVRFYKYADANSNTNPIYPSLSPDDATGYIIKVDDVPADTIWVI
                     DYNNYLPNLISIEPDAQSTDPCSELDLLINASIPKLIYTTVSGNSYELPRNFTVKYQT
                     KKWENGAWVPDSLTYPIILPATKLSVTAPFCDTKFIISGDQYAQKFGLDIRKTSEYEY
                     TAVAVECHLTTVVTSRKPKNGEKSNEDSYPDSDKQPISFSVPIDVQFLSNANPAATYF
                     NWTIYKDDQLIINRTDQDHRYSFTDYGTYKVKVVVSSSKCSYSDSITINAYDAAIQVP
                     NVFTPNGDGMNDEFRVAYKSLLGFECWVYNRWGRKVFHWNDPTKGWNGKIGGADAAEG
                     PYFYIIKATGYGLKPDPKNPGSKVKSTITLKGDINLLRGLKK"
BASE COUNT         1822 a         1088 c         1049 g         1962 t
ORIGIN      
        1 gttttagcga taataaattg atcgaatgga tgacgtgaac catcagcttg agtttcgcgt
       61 aatggggctg tttgcggagt tgcaatataa ccagggccta agccgttaca ctgaatgttg
      121 aattcaccat attcagaagc aatgtttttg gtcaacattt tcaacccgcc tttagcagca
      181 gcataagccg atacggtttc gcggcctaac tcgctcatca ttgaacaaat attgatgatt
      241 ttaccggcac ctcgtttcat catgcttgga ataactgctt ttgcacaaat gaaaggacca
      301 ttgaggtcaa tgtcaattac ctgacggaat tcagcagcgc tcatttcgtg catcggaata
      361 cgtttgataa tgcctgcgtt atttacaaga atatcaattt cgccaacttc tgttgcaatc
      421 tgagcaacta ctgcattgat ttgatcttca ttagtaacat cagccacata tccatgagct
      481 ttaattcctt cggattcata agctgcaatt cctttgttta ctaaatcctg attgatatca
      541 ttaaaaacga tggtagcacc tgctttggcc aacccacaag caatagcata accgataccg
      601 taagaagctc ccgttacaag ggccactttt cctgttaaat caaattggtt catatttatt
      661 ttaagtttat cctacccccc agaaagggat aaggaatgtt tttttattat aattgaaaat
      721 attgtaatca aaagcccact tttgattata cggggattta tcttaactct gtgtgtttat
      781 agaagtcctg atcgctgtag tcaagatttt cgccagccat tccccaaatg aaggtgtaat
      841 tgctggtagc agctgctgag tgaatagacc attcaggaga aattactgcc tcatcacctt
      901 tcatccaaat gtgacgggtt tcagttggtt cgcccatgaa gtgacaaacc gcttgtcctt
      961 caggaacttc aaaatagaaa taagcttcca tacgacggct atgggtgtgt gcaggcatcg
     1021 tattccaaac acttccggga gctaattctg tcatacccat ttgtaactgg catgtttcta
     1081 aaacctgaca aaccaacatt ttgttgatat tgcgatgatt agcagtttcc aatgatccca
     1141 tttcagctac aacagcatca gcttttgtaa tttttcgatc ggggaatgtt ttatgtgcag
     1201 gagcagagtt gaagtaaaat ttagcaggat ttttagggtc aatgctttcg aaagttactt
     1261 tgcgatcacc tgaacccagg taaagagctt ctttaaaacc taattcaaat acaactccgt
     1321 caactgtaat tttaccggct cctcctacgt tgaaagttcc aaattcgcga cgggaaagga
     1381 aaaaatctga tttcaacgga tcaatagctt ctaaagtcag cacttggttt accggcattg
     1441 ctccaccaac taccaatctg tcatacaatg agtaaaccat gtttacttca tctacagaaa
     1501 atactttttc gattaaatgt tctttacgta aacgtgcggt atcataacct ttcgcatcct
     1561 gtggatgtga ggcatacctg atttcataat ttgttttcat tttatatgta ttgaattttt
     1621 ttattaataa tgcaattggt caaccaaaag tactgtttat ttcagagatg ctaaagttta
     1681 agatacattt tataaagcat ttttacattt attaacttgt ctcgatgcgt cattgggtat
     1741 aaatacgaat caagcgtggt aattacttag atatggccat aaacccaaac tgctggttta
     1801 atgcaaagct actataaatg agggtaggag catatacact tttaaacaaa aaaagtgtat
     1861 aaaatgacat aaatggaagt aatgggaata ttatttgatc tgaatcagcc aggccagatt
     1921 tacggaaaga tttgcattat tagaattatc aaaataatct tttttgttat tggagtaaat
     1981 atcactcaga gcataatatg cacgcgtgtc caactgtaat tgatttcctt tgatattgaa
     2041 taaaaatccg atccccccgc aaagtccgta atcaaatgca ttctgaacag ccgttgtctg
     2101 ctgagtctct gtagaatttg ttgttccgtt taccagtact ttttcagaga gtaaatagct
     2161 aattttagga ccaagattga tgaaaaaacg attcttttta cccatgtaaa tatgagtaag
     2221 aaacggtaat tcgatataat tcaattgctt tgtaaataat ccgtttgctt ctttccaacc
     2281 tcgctgcgaa aagttcaact cggcctgcat acccacgttc ttttcagcaa tgtacctgaa
     2341 aacgagtccg ccattatacc cttgcaggta agtctgagct acaaccgggt taaatattac
     2401 catcgagcct gttgcaccag ctgtaactcc cacgtatatt tctggtttat ccaaacgcac
     2461 ctgagcaatc agcgaagttg agaataatat aaaaatgaaa atccaatttt tacgcataaa
     2521 ataatgtccg gaaatttaca atatgattaa tcttcaccca aataaacacg ctgatttaca
     2581 aatcctgaac catttgaaat acgctcaaat tttggctgag attgtaatcc atttttaaaa
     2641 ttgtatgatc ctattttgtc cgagaattta tttccgtatc gttgaaaaat tgaaataaaa
     2701 taacttgtta agtcataacc caataaatcg aaatgtggca aatctttgtt tgaatttttt
     2761 ccaaaataat tagtaaattg cttgctgtaa tcgtcaagct tatcctggtt tacattaaac
     2821 atgaaagggg aaatatatat tcctgcaggc attttttcat tttgattttt ccaactgtat
     2881 tgctcaaaaa gaagaagatc atattgagtt gctgccactc tgagcggatt taaaaacgga
     2941 ctaacaaaag caaatttatc ggtattgaat ataaccaggt tttttccatc agttttcaaa
     3001 acacttccaa aatcggctgc atcagaagtg gtaagttcta atttagaaaa agttttattg
     3061 gcttttttca gttctttttg caaacctgct gcccacattt ttccttcgtc catagaactt
     3121 acgccaggaa tttcggcaaa aacgatattc atattcttat atttgccggt aaaaagttct
     3181 gtagcaaaac tcaattcagt ttctgttccg ggattaaact gaaacagata cggattggtt
     3241 tcaatatcgg aaactttgga tgtaaaagga atcaaggtgt tgattctgtt ttcctttgca
     3301 taatcactga ttaatgaaac ctgattgctg aatgccggtc cgataattaa atccatggtt
     3361 ttcagttccg aatttgaaag aacttcactc agtttttctt ccgatttttc ggtatcgtag
     3421 ctgtatattt caaatgatat tccttttagt tttgcctcaa gtactgcaag caatgcaccc
     3481 tgataaaaat caacaaaacg gtctatgcca gcatctttct tttcctgatc aagcataaat
     3541 ggtaataaaa aggcgatacg aatgatctta tttttatcag aagtctttgt taatacgctg
     3601 gtatcaaaca aattatttac atcattgtcc tgtttattcc catttgttac gttgtttttt
     3661 tgagatgtag tttgagttgc agtagctatc gttccttgtt ttgccggaat tttaagttct
     3721 gttccgctaa ccaatgtggt agcggaagca gggtttagtt ctatgatttc atttacatcc
     3781 accttatact gccggctaat tgaataaagt gtctcatcgg gctgaactac atgaatgaga
     3841 atattctttt ttgcctcttt attatctttt gaagcctttt tctcggcttt ttcaacttct
     3901 gcttcttttt ttcgggtttc ctttacttgt acaggaattt ttaataccat tccttcctgc
     3961 aaaccatttt gaatttcggg attgtatttc tttatatcat cctgattggc attatattta
     4021 cgactaatgg cgaaaagtgt ttgttttttc agaactgtat gttcaataaa ttcaggcttt
     4081 gagttggatt cggaaaaaat atttttctgg tttttctttt gaacaggaat cagtaaatgt
     4141 tggccggctt tcaatccgtt tttaatttca ggatttgctt tgctgatctc atcaggcgat
     4201 atttcgaatt tccggccaat agcaaacaaa ccttcacttg cctgtaccgt atactcgtag
     4261 tattcaaccc cgtttatttt ttttacagga taatctttag gttgtccaaa tcctgaaaaa
     4321 ctaatcagaa ggagtatggc gagcaaataa ccgaataact tcgttttcat tattataggt
     4381 gttactgatt gattttgagt tagaactgca aaagtacaaa aaatatgctt catcaagtga
     4441 aacaaggtaa taattcagac ttttttttgt tattgataag aaagatgtac atttgcatac
     4501 gataaatgtt tacccgcaat tattcacaca ctcatacatg aaaaaaatat tttttttgtt
     4561 tcttttttgt ctttgtacaa tatatattcc ggctcaactt tcgattaaag gtaactatca
     4621 attgattggg cagaaaatag gcaaagattc agttagtgta attcttttcg atacaattga
     4681 ttcggaaaca gaaatcagtt atgccggaac aaatgttcgg ttttacaaat atgcagatgc
     4741 caattcgaat acaaatccta tttatccttc attaagcccg gacgatgcaa caggatatat
     4801 tattaaagta gatgatgttc ccgcagatac tatttgggta attgattata ataactacct
     4861 tccaaactta atatctattg aacccgatgc tcaatccacc gatccatgca gtgaattgga
     4921 tctgttgatt aatgccagca ttcccaaatt gatttatacg acggtctcgg gtaattccta
     4981 cgaacttcca cgaaatttca ccgttaaata tcaaacaaag aaatgggaaa atggtgcgtg
     5041 ggtaccggat agtcttacat atccaatcat tttaccggca acaaaattgt ctgtgactgc
     5101 tccgttttgt gatactaagt ttataattag cggtgatcaa tatgcgcaga aatttggact
     5161 ggatattcgt aaaacaagtg aatatgaata tactgctgtt gctgtagaat gtcatctgac
     5221 gacagttgtc acatcccgta aaccgaagaa tggagaaaaa agcaatgaag attcttatcc
     5281 ggatagtgac aaacagccta taagcttttc agtacccatt gatgttcagt ttttaagcaa
     5341 cgcaaacccc gctgcaactt attttaactg gacaatttat aaagatgacc aattgattat
     5401 taatcgtacg gatcaggatc atcgctactc attcacagat tacggaacat ataaagtaaa
     5461 agtagttgta agtagttcta aatgttctta ttccgactca attacaatca atgcctatga
     5521 tgctgccatt caggtaccca atgtatttac tccaaacggg gatggtatga atgatgaatt
     5581 cagggttgca tataagtcat tgctgggttt cgaatgctgg gtgtataacc gttggggacg
     5641 gaaagttttc cattggaacg atcctacaaa aggctggaat ggaaaaattg gtggggcaga
     5701 tgcagcagaa ggcccttact tttatataat caaagctaca gggtacggac taaaacccga
     5761 tccgaaaaac cccggttcga aagtaaagtc aactattacg cttaaaggtg atattaattt
     5821 gttgagagga ttaaagaagt aagaagtttt tagttggtag tttaaaacaa aatataaaat
     5881 ataaaaggag taaaatcaga ttgattttac tccttttata t
//
LOCUS       DATDNM010000396         2789 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1438748, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000396 DATDNM010000000
VERSION     DATDNM010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2789
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1438748"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..1097)
                     /locus_tag="VI413_06670"
     CDS             complement(60..1097)
                     /locus_tag="VI413_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008822782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEY6914340.1"
                     /translation="MDSEKQIILPAEWAEQQFVQLTWPHGSTDWADMLDEVNECFVNI
                     AKEIIKRENLLIVCADTDEVENLLSDIDLSRVTFVEMQTNDTWARDHGGITVFEDGKP
                     VVYDFTFNGWGMKFAANHDNLITRNLYMAGIFGDYGHRNCFDFVLEGGSIESDGEGTV
                     LTTAECLLSYNRNNLSEEDIEAKLKDYFGLKQVLWLEHGYLAGDDTDSHVDTLARLCD
                     RSTIAYVKCDDENDEHFLELKKMKKELRQFRTSDGRYFRLIPLPMADEVYFEGERLPA
                     TYANFLIINGAVLVPTYNSPKDEIAKQQLQKAFPDREIVGINCIALIKQHGSLHCVTM
                     QYPRPLTPKGE"
     gene            1196..1840
                     /gene="queC"
                     /locus_tag="VI413_06675"
     CDS             1196..1840
                     /gene="queC"
                     /locus_tag="VI413_06675"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEY6914341.1"
                     /translation="MKDIVILYSGGMDSSVALYQFANRIKLAVSFNYGSKHNVREIEY
                     AAKNCKALGIEHRVIEMDLNKMGFVSDLLQSGGNIPDGHYEDENMKKTVVPFRNGIML
                     SIAAGVAESIDCNRLLISNHAGDHAIYPDCRPDFIKSMNDAISFGTYNNVEIMAPFTN
                     LSKRDIALIGKELGVPFVSTYSCYNGQDIHCGTCGTCTERKEALEGFDPTVYLR"
     gene            1984..>2789
                     /locus_tag="VI413_06680"
     CDS             1984..>2789
                     /locus_tag="VI413_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018965567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase NADP-binding
                     domain-containing protein"
                     /protein_id="HEY6914342.1"
                     /translation="MGKVLIIGAGGVGTVVVNKVAQNTDVFTEIMLASRTKSKCDVIA
                     ADVKKRFGVEVKTAQVDADNVPELVTLLNAYKPELLINVALPYQDLTIMDACLEAGVN
                     YLDTANYEPKDEAHFEYSWQWAYKERFEKAGLTAILGCGFDPGVTSIYTAYAAKHHFD
                     EIQYLDIVDCNAGDHGKAFATNFNPEINIREVSQRGKYWENGQWIETEPHQIHMPLNY
                     PEIGPKESYVIYHEELESLVKNYPTIKRARFWMTFGQEYLTHLRVIQNIG"
BASE COUNT          846 a          579 c          549 g          815 t
ORIGIN      
        1 aatggggcgg aactaaatta gttatgtttt atatttcaaa tattattttc ataagactct
       61 tattcccctt taggggttag gggtctcgga tattgcatag ttacacaatg tagcgagcca
      121 tgttgcttga taagtgcaat acaattgata ccaacaattt cccgatcagg aaatgctttt
      181 tgcaattgtt gttttgcaat ttcgtcttta ggcgaattgt atgttggcac taaaaccgct
      241 ccattgataa ttaaaaagtt agcataggtt gccggaagtc gctcgccttc aaaatacact
      301 tcatcagcca ttggcagcgg aataagcctg aaatatcttc cgtctgaagt cctaaattga
      361 cgaagctcct ttttcatttt cttcaactcc aaaaaatgct catcattctc atcatcgcac
      421 tttacataag caatggtgct tctgtcacaa agtcgtgcca atgtatccac gtggctatca
      481 gtatcgtcac cagccaaata tccatgttcc aaccataaaa cctgttttag cccaaaatag
      541 tcttttagtt tggcttcaat atcttcttcc gacaaattgt tacggttata cgaaagcaaa
      601 cattcagcag tagtcaaaac cgttccttcg ccatccgatt caatactgcc accttccaga
      661 acaaagtcaa aacagtttct atgtccatag tctccaaaaa tgccggccat gtagaggttt
      721 ctggtaatca gattgtcgtg attagccgca aacttcattc cccacccgtt gaaggtaaaa
      781 tcataaacca ccggtttacc gtcttcaaaa actgttattc ctccgtgatc gcgcgcccag
      841 gtatcgttgg tttgcatttc tacaaacgta accctcgaca aatcgatgtc actgagcaga
      901 ttttccactt cgtctgtatc agcacaaact atcagcagat tttcacgctt gataatttct
      961 tttgctatat tgacgaaaca ttcatttact tcatcgagca tatcagccca atcggtactg
     1021 ccatgcggcc aggtaagttg cacaaattgc tgttcagccc attcggcagg tagtattatt
     1081 tgtttttcag aatccattga attattcaaa attggataca aaaatacaaa aaaatagttg
     1141 ttcattcaat tctcattgct tttgactaat tttgtatcct ctaaacaagt taaaaatgaa
     1201 agatattgta atcttatatt caggcggaat ggacagttca gtagcattgt accagtttgc
     1261 caaccgtatt aaactggctg tgtcgttcaa ttatggttcg aaacataatg ttcgtgaaat
     1321 agaatatgct gcaaaaaatt gcaaagcgct gggcattgaa cacagggtta ttgaaatgga
     1381 tttaaataaa atgggatttg tttcggatct tttgcagtcg ggcggcaata ttcccgacgg
     1441 gcattacgag gatgaaaaca tgaaaaaaac cgttgttcct ttccgcaatg gcattatgct
     1501 cagcattgct gcaggagttg ccgaaagcat cgattgtaac cggttactca tttccaacca
     1561 tgccggcgat catgccattt acccggattg tcgccctgat tttatcaaaa gtatgaacga
     1621 tgccattagt tttgggacat ataataatgt agaaattatg gctccgttta ccaacttatc
     1681 aaaacgggat attgctttga ttggcaaaga actaggtgtt ccgttcgtaa gtacctactc
     1741 ttgttacaat gggcaggata ttcattgtgg gacttgcggt acctgcaccg agcgcaaaga
     1801 agcgttggaa ggctttgatc cgaccgtata tctgcggtaa gcagcagagg taagaggtaa
     1861 gttaagctca tagcatatca agacctttgc gagcttaatt agatttcgct tatttttcta
     1921 tttcaccaaa aacaactatt tttgtaggct ctaaaataaa aaccctcaat aactaaacga
     1981 aaaatgggaa aagtattaat tatcggcgcc ggaggcgtag gaacggtagt tgtaaataaa
     2041 gtagctcaaa acacagacgt atttactgaa attatgttgg ctagccgcac aaaatcaaaa
     2101 tgtgatgtga ttgctgctga tgtaaaaaaa cgttttggcg tagaagtaaa aacggcacaa
     2161 gttgatgccg acaatgtacc ggaattggtt accttgctta atgcatacaa accggaattg
     2221 cttataaacg tggcacttcc ttatcaggat ttgaccatta tggatgcttg tctggaggcc
     2281 ggagttaatt atctggacac agccaactat gaacctaaag acgaagcaca cttcgaatac
     2341 agctggcaat gggcttataa agaacgcttt gaaaaagccg gattgaccgc tatccttggt
     2401 tgtggttttg acccgggtgt aacaagcatt tatactgctt acgctgcgaa acaccatttc
     2461 gacgaaattc aatacctgga tatcgtagac tgtaatgccg gcgaccacgg caaagcattt
     2521 gccactaact tcaacccgga aatcaatatc cgcgaggttt cccaacgtgg taaatactgg
     2581 gaaaacggac agtggattga aacagagccg caccaaattc acatgccgtt aaactaccct
     2641 gaaatcggcc caaaagaatc gtatgtaatt tatcacgaag agttggagtc attggtaaaa
     2701 aactatccaa cgattaaacg tgctcgcttc tggatgactt tcggacagga ataccttaca
     2761 catttacgtg ttattcaaaa tataggtat
//
LOCUS       DATDNM010000397         3598 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_369899, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000397 DATDNM010000000
VERSION     DATDNM010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369899"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            98..1267
                     /locus_tag="VI413_06685"
     CDS             98..1267
                     /locus_tag="VI413_06685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007568474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 76 protein"
                     /protein_id="HEY6914343.1"
                     /translation="MKKIILVLMGVSVLTLNAKNRKTPYLEKAEYMFQKIWSMYRAPK
                     YGLFSEYYPNTYKPDLTYFQDNTNKKAQEVSYLWPMSGVFSSTNILMEIDAKKYGPFL
                     DSMITAVEKYYDTTRTPPGYQAYPGKFEKSDRYYDDNGLVGIDYIDAYNVSKNPHYLA
                     KAKEVFTFIKSGWSDDFGGGVSWLEGIRDQKPACSNGKATVLALKLYQSTKEEKYLSE
                     GKMFYNWMMTHLEDSTLHIIWNSLSTVNGKPDKVFYTYNTGTMIQSSVRLYNITGEKK
                     YLNNARRLAEGSYRHFVKKSDKGFRYIDDLPWFNVVLFRGYQELYEVDRNPKYINAII
                     SGADWAWENARDEAGLIYKDWTGQKDEKKQPKWLLDEACMAELYARIAIIKGKIK"
     gene            1445..>3598
                     /locus_tag="VI413_06690"
     CDS             1445..>3598
                     /locus_tag="VI413_06690"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004306680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GH92 family glycosyl hydrolase"
                     /protein_id="HEY6914344.1"
                     /translation="MKIRITLLLSILALSCFNINAGNLAQYVKPNIGITHCRWFFYTP
                     AAMPFGLAKLGPSTNAHYGNKDGWEAVGYDSRDTSIEGFACLHEFQVGGIVLAPINGK
                     LQTIPGKLENPDEGYRSRFDRKDEYATSGYYSVLLKDYNIKAELTATKRVGFQRYTFP
                     ESAQSHILFDIGNRQGESGKVLDAKVTYTPDGRIEGYVITEPEYVKKYQKGASISMYF
                     SAVVDKKPSNWGTFRHNDITEGAKEILGEGAGLYLTFATKANEAITVKVGLSYTSVAN
                     ARLNLMTEAKDLTFEQAKSLNMNTWEDYMGRITVKSNNEVDKTKFYTGLFHALLGRGL
                     ASDVNGAYPRNNGKAGQIPLDKKGKSEFDFYNTDAIWGGYWNLTQLWALAYPEYYKDW
                     VQSQIQIYKDAGWLGDGVANSRYVSGVGTNFTGLAIASAYNCGIRNFDVKAGYEAALK
                     NELVSENRIAGAGKLDVGEFVKRGYCPYTSELGYETNTEGSGFGASHTLEYSYSAYAV
                     AQFAKALNKQEDYKKLINLADGWKKLFDPSTKFIRPRDKNGEFIKPFSPTEPWRGFQE
                     GNAMQYTFYVPQNPKELVNLVGKDNFNNRLDSIFTLSQANVFGGGKTIDAFAGVMAAY
                     NHGNQPNLHISWLFNFSGKPYLTQKWVRAICDEFYGTEEIHGYGYGQDEDQGQLGSWY
                     VLAGMGLFDVKGLTDVKPSMQIGSPLFDEITIKLNP"
BASE COUNT         1146 a          691 c          820 g          941 t
ORIGIN      
        1 ttgcttatgc aggatgcggt agttgaatcg tatggggcgc tatctattta caaaaaagaa
       61 gtgttaggca ctaaatagaa ataaggtttg tttaggtatg aaaaagatta ttttagtgct
      121 gatgggagtc tcggttttaa cgttaaacgc gaagaaccga aaaacccctt atttggagaa
      181 agccgagtac atgttccaga aaatctggag catgtatcgg gctccaaaat acggactttt
      241 ctcagaatat taccccaaca cctacaaacc tgatttgact tatttccagg acaatacaaa
      301 taagaaagca caggaagttt cctatttatg gcctatgagc ggcgtttttt catcgaccaa
      361 catattaatg gaaatagatg ccaaaaaata cggaccattt ttggattcca tgattacggc
      421 tgttgaaaag tattatgaca ccacccgaac accacccggt tatcaggcat atccgggaaa
      481 gtttgagaaa agtgaccggt attacgacga taatggattg gtaggaattg attatatcga
      541 cgcttacaat gtgagtaaaa atccacacta cctggcaaag gccaaagagg ttttcacgtt
      601 tatcaaaagc ggttggagcg acgattttgg aggaggcgta agctggctcg aagggattcg
      661 cgatcagaag ccggcctgtt ccaacggaaa agctaccgtg ttggctctca agctatatca
      721 atcgaccaaa gaagaaaaat acctgagcga aggaaaaatg ttttacaact ggatgatgac
      781 acatttggaa gacagcacgt tgcacatcat atggaattcg ttatcaaccg taaatggaaa
      841 acctgataaa gttttttaca cgtacaacac gggaacgatg attcaatcgt cagtgcggtt
      901 gtataatatt accggcgaaa agaaatacct gaacaacgcc cgtcgattgg ccgaaggcag
      961 ctaccggcat ttcgtcaaaa aatcggacaa aggattcagg tatatcgatg atttgccgtg
     1021 gttcaatgta gtgcttttcc gtggttatca ggagctttac gaagtagacc gcaaccccaa
     1081 atatatcaac gccattattt cgggagccga ttgggcctgg gaaaatgcac gcgacgaagc
     1141 cggattgatt tacaaagact ggacggggca aaaagatgaa aagaaacaac ctaagtggct
     1201 gctggacgaa gcgtgtatgg ccgaactcta tgcgcggatt gcaataatta aaggtaaaat
     1261 aaaataattc agcattaaaa aacgaggaaa tatgttttat aacacaaagt tccttaaggt
     1321 acagttggca cttgaaattg tattactata aacaaagtta ttagttagct gaaaatttac
     1381 aagaggatta ggtaccttat cctgaaatat gaccctataa gaaatgacta aataatcacc
     1441 aaaaatgaaa atcagaataa cactgctgct aagcatatta gccctttcat gttttaatat
     1501 taatgccgga aatttggcgc agtatgtaaa acctaatatc ggtataactc attgccgttg
     1561 gtttttctac acgccggctg caatgccatt cggtctggca aaattaggtc cttctacaaa
     1621 tgcccattat ggaaataaag atggttggga ggccgttgga tatgattcgc gggatacttc
     1681 tatcgaagga tttgcctgtt tgcatgagtt tcaggttggt ggaattgtgt tggcaccaat
     1741 taatggcaag ttgcaaacca tccccggaaa actcgaaaat ccggacgaag gctatcgttc
     1801 ccgtttcgat cgcaaagacg aatatgccac atcgggttat tattctgtct tgctgaaaga
     1861 ttataatatc aaagccgaac tcacagccac aaaacgggtt ggatttcaac gctatacttt
     1921 ccctgaatca gcacaatcgc atattctttt cgacattggc aaccgtcagg gtgaaagtgg
     1981 caaagtgttg gatgcaaaag tgacttatac acccgatgga cgaattgaag gttatgttat
     2041 cactgaacct gaatacgtaa aaaaatatca gaaaggtgcg tcgatttcga tgtatttctc
     2101 ggccgttgtt gataaaaaac caagcaattg gggaactttc cgtcataacg acattacaga
     2161 aggtgctaaa gaaattctgg gcgaaggtgc cggtctttac ctcacttttg ccaccaaagc
     2221 caatgaagca attacagtaa aagttggtct ttcctacact tcggtggcta acgcccggtt
     2281 gaatttaatg actgaagcaa aagatttaac ttttgagcag gctaaaagcc tcaacatgaa
     2341 tacctgggaa gattatatgg gtagaattac tgttaaatcg aataatgaag tagataaaac
     2401 aaaattttac accggtcttt tccatgcctt acttggccgt ggattagcaa gtgatgtgaa
     2461 cggagcttat ccaagaaata acggcaaagc cgggcagatt ccattggaca aaaagggcaa
     2521 atcagaattt gatttctata ataccgatgc catttggggt ggttactgga atttgacaca
     2581 gctctgggca ctggcttatc ctgagtatta taaagactgg gttcaaagcc agatacagat
     2641 atacaaagat gccggttggc tgggcgatgg tgtagctaac agcaggtacg tttccggagt
     2701 tggaactaac tttaccggtc tggccattgc atcggcttac aattgtggca ttcgcaactt
     2761 tgatgttaaa gccggatacg aagcggctct taaaaacgaa ttggtctctg aaaacagaat
     2821 tgccggagcg ggaaaattag atgttggcga atttgtcaaa agaggttatt gtccatacac
     2881 aagtgagttg ggttacgaaa ccaacacaga aggttcagga tttggagctt cgcacacgtt
     2941 ggaatattcc tacagcgctt atgcagtggc ccaatttgca aaagccctga ataaacagga
     3001 ggattacaag aaacttataa acctggcaga tggttggaaa aagctctttg acccgtcaac
     3061 aaagtttata cgtccgcgcg ataaaaacgg tgagtttatc aaaccattta gcccaaccga
     3121 gccgtggcgt ggttttcagg aaggcaatgc catgcaatat accttttacg tacctcaaaa
     3181 cccgaaggaa ctggttaatt tagttggtaa agataacttc aacaacaggc tggatagcat
     3241 tttcacctta tcacaagcca atgtttttgg aggagggaaa acaattgatg catttgccgg
     3301 tgtgatggca gcctacaacc atggcaatca gcccaatctg cacatttcct ggctcttcaa
     3361 cttttccggt aaaccttatc tgactcaaaa atgggtacgc gccatttgcg atgaatttta
     3421 tggaaccgaa gaaattcatg gttacggtta cggacaagat gaagatcagg gtcagttagg
     3481 ctcgtggtat gtgttggcag gaatgggact ttttgatgta aaaggactga ctgatgtcaa
     3541 accaagcatg caaattggca gcccgctatt cgacgaaatc acgatcaaat tgaatcct
//
LOCUS       DATDNM010000398         3811 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_369960, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000398 DATDNM010000000
VERSION     DATDNM010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3811
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369960"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /locus_tag="VI413_06695"
     CDS             complement(<1..207)
                     /locus_tag="VI413_06695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HEY6914345.1"
                     /translation="MILDSLENSGLYESIHPRFKQAFDFLRNTDLVALPLGKVELDGK
                     NLFVNVVDAAGKTPEVAKMETHNKY"
     gene            complement(243..917)
                     /locus_tag="VI413_06700"
     CDS             complement(243..917)
                     /locus_tag="VI413_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009137161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2461 domain-containing protein"
                     /protein_id="HEY6914346.1"
                     /translation="MNIQNILQFLEELKINNNREWFAENKARYDGLRADFEKLSKDLI
                     LEISHFDEDIKHVEVKDCVFRIYRDTRFSHDKTPYKTHFGVFIASAGGRKSQRGGYYL
                     HLDPDGCFVAAGVWCPQPDLLKALRQSVYDNIDEMNEIRHNPEFSRYFNDFYEEDKLK
                     TVPRGFPKDFPDAELLKLKHYMVEYKFDEKMLESDNFVQQVAQIVKCAYPLNRFLNYT
                     VDEVTA"
     gene            1129..2148
                     /gene="pheS"
                     /locus_tag="VI413_06705"
     CDS             1129..2148
                     /gene="pheS"
                     /locus_tag="VI413_06705"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002561121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEY6914347.1"
                     /translation="MKNRIKQLLEEVSQLAAANQDELEALRIKYLSKKGQISELFNDF
                     RNVANEEKREVGQLLNELKNVAQDKINELKDAFGNSATDDNKTDLTRSADPVKLGTRH
                     PLSLVKHEIIDIFSRIGFTIAEGPEIEDDWHVFGALNFPPEHPARDMQDTFFIEQNPD
                     VLLRTHTSSVQSRVMANQKPPIRMLFPGRVYRNEAISYRAHCFFHQVEGLYIDKDVSF
                     ADLKQALMYFAKEMFGENTDIRLRPSYFPFTEPSAEMDISCNICGGKGCPFCKHTGWV
                     EILGCGMVDPNVLENCGIDSKVYSGYAFGMGVERITNLKYQVKDLRMFSENDVRFLQQ
                     FESAY"
     gene            complement(2275..3036)
                     /locus_tag="VI413_06710"
     CDS             complement(2275..3036)
                     /locus_tag="VI413_06710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914348.1"
                     /translation="MILISAAVAQAQENQKLPSHKEKPVLIDDTHPESLKLAKQKHDK
                     EAQNLLMNKGKFILGVSSMLSSVGTGSDIGSIGFGSFTQKSDAIGFVEQEPVKSTNIN
                     LLPKFGYFVVDNLAVGLDLSLIYQSRSFKTIYNESNSKGTYFCVGPFVRYYIPAGKIL
                     PYLEITGGFGAENIWSRDINSLYAYTSISSSGLFSVGGGAGIAIPIGDRVTFDALLGY
                     NSLTVNEPENNTDNQRTVMGIFGLKLGFSVLLGSE"
     gene            complement(3123..>3811)
                     /locus_tag="VI413_06715"
     CDS             complement(3123..>3811)
                     /locus_tag="VI413_06715"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY6914349.1"
                     /translation="SSAVRLASMLVPNLTTNKVFSYTEYNQNYTNYFNSAEFKSQTTE
                     NPFINNFATTIDVATTTTTASYPVQNVGGNLQRIFFLTGRGTASASEMVINGLKPFLP
                     CVLIGDTTVGKNVGSTLVNDDENKKNQWAFMPIILKYFNKDHQSDFTKGFVPNFLEMD
                     DYSYDLGDIQEGLLAKAISQISGIQQSAAKVAPAKRQLLRSSIDFKPMREGLIVRSKS
                     IDSYINRVRK"
BASE COUNT         1155 a          802 c          710 g         1144 t
ORIGIN      
        1 gtatttgtta tgcgtttcca tttttgcaac ttcaggcgtt tttcctgctg catcaactac
       61 gttcacgaac aaattcttac catccaactc cacttttcct aatgggagag ccactaaatc
      121 agtgttacgc aaaaaatcga atgcttgttt aaagcgcggg tggattgatt catacaatcc
      181 tgaattttct aaagaatcta aaatcatttt tatttggaat ttaattattt acaaccaatc
      241 tgttatgcag taacttcgtc aacagtgtaa ttcaaaaagc gattcaaagg ataagcacat
      301 tttacaatct gagcaacctg ttggacaaaa ttatcactct ccagcatttt ttcatcaaat
      361 ttgtattcaa ccatataatg tttcagcttc aacaactcgg catcgggaaa gtctttaggg
      421 aaacctcgcg gaacggtttt gagtttgtct tcctcgtaga aatcattgaa ataacgtgag
      481 aattcggggt tgtgacgaat ttcattcatt tcgtcaatgt tatcgtaaac gctttggcgc
      541 aatgccttca acaagtccgg ttgaggacac catactccag cagcaacaaa acaaccatca
      601 ggatcgagat gcagataata acccccacgt tggctttttc gtccgcctgc tgaagctata
      661 aatacaccga aatgtgtttt atagggtgtt ttatcatgcg aaaaacgggt atcccggtaa
      721 atacggaaaa cacaatcctt aacttctaca tgctttatat cttcgtcgaa gtgagatatt
      781 tcaagaataa gatccttgct tagtttctca aagtcagccc gaagtccatc gtacctcgcc
      841 ttgttttctg caaaccactc gcggttattg ttgattttca attcttccag gaattgaagt
      901 atattctgga tgttcatacg tgtaataatt tagcgtatga caaatataag gcaaaattca
      961 gacaaaatca ggattacatt cttttttttt aaacacaact aatttttttg tggaaaaatg
     1021 attacttttg catgctgtta gaaaatcgca aagccctgtt aatgaataca caataaattg
     1081 taaaacaggc aaattacaat caacagcgag aacgttaaga caaaaaaaat gaaaaatcgg
     1141 attaaacaat tactggaaga agtaagccaa ctggctgctg ctaaccagga tgaactggaa
     1201 gcacttcgta ttaaatattt gagtaaaaaa ggacagattt cagaactctt caacgacttc
     1261 agaaatgtag ccaacgaaga aaaacgtgaa gtaggtcaat tgcttaacga actgaaaaac
     1321 gttgcacagg ataaaataaa cgaactaaaa gatgctttcg gcaattctgc tacagacgat
     1381 aataaaactg atttaacccg cagcgcagac cctgttaaac tgggaacccg tcatccgcta
     1441 tcgctggtta aacacgaaat catagatatt ttctcccgca tcgggtttac cattgccgaa
     1501 ggtcctgaaa ttgaagacga ctggcatgta tttggagcat tgaactttcc accggaacac
     1561 ccggcccgcg atatgcagga cactttcttt atcgaacaga atccggatgt attacttcgc
     1621 acgcacactt cttcagtcca atcccgtgtt atggcaaatc agaaaccgcc tattcgcatg
     1681 ttgttcccgg gtcgtgtgta ccgcaacgaa gctatttcgt atcgtgcaca ctgctttttc
     1741 catcaggtag aagggttgta tatcgacaaa gacgtatcat ttgccgacct gaaacaagcc
     1801 ctgatgtatt ttgccaaaga aatgtttgga gagaacacag atatccgttt gcgtccgtct
     1861 tacttcccat tcaccgagcc aagtgccgaa atggatattt catgtaatat ttgcggagga
     1921 aaaggttgcc cgttctgcaa acacaccggc tgggtagaaa ttctgggttg cggtatggta
     1981 gatccaaatg tattggaaaa ttgcggtatt gactcgaaag tatattccgg ctatgccttt
     2041 ggaatgggtg ttgagcgtat taccaacctg aaataccagg taaaagactt gcgcatgttc
     2101 tccgaaaacg atgtgcggtt cctgcagcaa tttgaatcgg catattaaaa cagctgaatc
     2161 tcataacaaa aacgagctgg ttgctttctt gcaaccagct cgttttttat ttaatcacga
     2221 ctgcagattt ttcagattct cctcccgcac gttgcaaggc aatgagtgca gtcattattc
     2281 tgaacctaac aatactgaaa atcccaactt caacccaaat attcccataa cggttctctg
     2341 attatctgta ttgttttcgg gttcatttac tgtcagagaa ttgtaaccga gcagtgcatc
     2401 aaatgtcacc ctatccccaa ttggaattgc aatacctgca cctcctccca ctgagaacaa
     2461 accagaagag ctgatgctgg tatatgcata taaagagtta atatcgcgag accaaatatt
     2521 ctctgcacca aaacctcccg taatttcaag gtatggtaat attttccctg caggaatgta
     2581 atatctcaca aatggtccga cacaaaaata agtgcccttt gaattagatt cattgtaaat
     2641 tgttttaaat gagcgactct gataaatcaa agagagatcc agaccaactg ccagattatc
     2701 cacaacaaaa tatccaaatt taggcaataa attaatgttg gtacttttca ctggctcttg
     2761 ttcaacaaaa ccaatagcat cgctcttttg agtaaaactg ccaaatccta ttgagccgat
     2821 atcagagcct gtcccaacag aactaagcat tgacgaaact cccaggataa atttaccctt
     2881 attcattagt aaattttgtg cctccttgtc atgtttctgt tttgccagtt tcaaactttc
     2941 gggatgcgta tcatctatca aaaccggttt ttctttgtga gaaggaagct tttggttttc
     3001 ctgcgcctgt gcaactgcag cacttattaa aatcataaaa cagagagttt tattaagatt
     3061 tattctcatg tctaatcgat atttttctgg ttaaataatg aatcaaacaa caacagtttc
     3121 atttattttc tcaccctgtt tatgtaactg tctattgatt tgcttcttac gatcaacccc
     3181 tctcgcattg gtttaaaatc aatggaagaa cgaagcagtt gacgttttgc cggagctact
     3241 tttgccgcgc tttgttgtat tcctgaaatc tggctgattg cttttgcgag caagccttcc
     3301 tgaatgtcac ccaaatcata cgagtaatcg tccatttcca aaaaattcgg gacaaaacct
     3361 ttagtgaagt cgctttgatg atccttgttg aagtatttca gtataattgg cataaaagcc
     3421 cattggttct ttttgttttc atcatcattc acaagtgttg agcccacatt tttacccacg
     3481 gtagtgtcgc cgataagcac acagggcagg aatggtttca ggccattgat gaccatttcg
     3541 cttgccgaag cagtacctcg cccggtcagg aagaaaatcc gttgcagatt tcctcccaca
     3601 ttctgtaccg gatatgatgc tgtagttgta gtagtagcaa catctattgt ggtagcaaaa
     3661 ttatttatga atggattttc ggtagtctgg cttttaaatt cggcactatt aaaataattg
     3721 gtatagttct gattgtactc tgtatacgaa aacactttat tagtggtcag atttggaaca
     3781 agcatactag ccagacgaac agccgacgac a
//
LOCUS       DATDNM010000399         5351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_157400, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000399 DATDNM010000000
VERSION     DATDNM010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5351
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157400"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            143..1786
                     /locus_tag="VI413_06720"
     CDS             143..1786
                     /locus_tag="VI413_06720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006799862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 28 protein"
                     /protein_id="HEY6914350.1"
                     /translation="MCKLNKIFISVVSYCLVLLSTTAAAKSNYDYLYKQLPFSMQKIA
                     PPVFKKNTVSVADFGGAGDGLTLNTGAFKKAVDALESKGGGKLVVPAGVWFTGPIELK
                     SNINLYLEKGALLLFSPDFDLYPLVNTCFEGLATRRCQSPISARNAENVAITGEGSIN
                     GSGEAWRPLKKAKVTEAYWKAVVKSGGVLKDPTYWFPTAKSLKGESISDMNVPRGILT
                     EEQWLEVKDFLRPAMINFIECKNVYLQGVLFENSPSWNIHPLMCTNVIIDNILVRNPS
                     YAQNGDGIDVESCKNVLLINSVFDVGDDAICIKSGKDEEGRKRARPTENMIVDNCKVF
                     KGHGGFVVGSEMSGGVRNIAVRNCQFLGTDVGLRFKSNRGRGGVVENIYISDIYMFDI
                     ATDSFLFDLFYGGKSASEALEDGDAPAAVSQLPPVTDETPVFRNIYVKNIVSRNARRA
                     MYFNGLPEMNISNINVENAWISSLLGAELSESDGINFKNIHITPQKGPALILQNVKNF
                     DLKEFYYPDSLSEVVRITGKSVNIKLPPGINKMKVVGIR"
     gene            2051..4786
                     /locus_tag="VI413_06725"
     CDS             2051..4786
                     /locus_tag="VI413_06725"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914351.1"
                     /translation="MKKIYAIALFVLCISNLASARTYYVSTTGNDSNTGTIDNPYLTI
                     NHVVDNLVQPGDTIFVRGGKYMLATTIRIKAKQNARADARIYLWAYNNEKVVLDGSQI
                     PHTDVNTFKMARCIYLNHEANYWYIKGLEMCNAKDNGMKLEGSFNVVENCKFHDNNDT
                     GLQLGMYKDFTIEETKSLPAGDPQFNPGYQFCNHNIVINCDSYYNFDKVQYNGSSDDG
                     GDADGFACKLFPGPGNEFHGCRGWKNSDDNWDLYMVYHPVVIDNCWAWKAAFDASGVS
                     TGGNGNGFKLGGGGTAGGAAFAQSVGAHLVHNCVSFENAAKGYDQNNAYEAMYLFNNV
                     GWGNAYNYRFPTVFQYGTMYMRNNIGFKPITLNHEFLSADKVGAQVPNTTYNSWTTLD
                     GCDPYKDGNKVNGTAVFTKDYSSEFKSLSSTLFLAERQSDGSLPDNDFAKLKAGSVFI
                     DKGEKVENFVLVPSIPVVNRPVGYVQLPNLSILYNDASADMGAYETGNFTQPTLALTQ
                     GSASQTVYTGSAMNKITYKWGGAATDATVTGLPEGVTTEKDAAAKTISIIGNPTSTST
                     FTVTTVGGVTPVSLSGTITISTLAPATLVCSSNNTSQTINIGSAITDIVFQMGGGATS
                     FEVTGLPAGLSQSVNGNTLTLSGTPTADGAYVVIALGGMVTLSISGNIARVIPTKVLT
                     GDWYHIQDSLNAVPNDLKGVITLTNGSATYPVVWNPGYSESGTVPAGCTIGAVNVERG
                     GSISWTLPSLVELKANLYFTGSRTIKISTLQNGVTTNWTSGSLGKGTYAGYNLLAEAG
                     IADTKSPVTVTFTNMATSGGIRMYDFYVKVYDTQTAVNQVAAEKLTFLMGQTASALIV
                     YGDIAQLKVYSASGSIVGQSILSQVVSTHNMAKGIYIVQIHDKNGRVVTQKFIKR"
     gene            5081..>5351
                     /locus_tag="VI413_06730"
     CDS             5081..>5351
                     /locus_tag="VI413_06730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEY6914352.1"
                     /translation="MSFSKSVIISYLFLVSSVYHAFALDPYSKRMADAQMARSGAITS
                     WDYPNGLFVESVLKVYNQYGGSAYYNYALNHAKATVSATSGKIATG"
BASE COUNT         1579 a          991 c         1204 g         1577 t
ORIGIN      
        1 tgaaaagaaa atgaatcggg atattgtcct ttatcaaagt ggcaatatcc catttataag
       61 ctcttgtttt ttacaagatg ggttattctt ttgccatatt cctgaaaaat aattgtttgt
      121 cagaacctaa aaataactgc caatgtgcaa attaaataag atatttatat cagtagtttc
      181 ttactgcttg gtgttgcttt caactacagc ggccgcaaaa agcaactatg attatctata
      241 caaacagctc ccgttttcga tgcaaaaaat tgctccgccg gttttcaaaa agaatactgt
      301 ttcggtagct gattttggag gggcgggtga cggcctaaca ctcaataccg gggctttcaa
      361 aaaggcagtt gatgcgttgg aaagcaaagg tggaggaaag ttggtggtgc cggcaggggt
      421 ttggtttacg ggacccattg agttgaagtc gaatatcaac ctgtatctcg aaaaaggagc
      481 attgttgctt ttttcgccag attttgactt atatccgttg gtgaatacat gtttcgaagg
      541 acttgcaaca cgccgttgcc agtcgccgat ttcggcacgc aatgctgaga atgttgctat
      601 tacgggtgaa ggttctatta acggttcggg ggaagcatgg cgaccgctca agaaagcaaa
      661 agtaactgag gcttactgga aagctgttgt gaaatcgggt ggagtattga aagacccaac
      721 ctattggttc ccgacagcaa aatcgttgaa aggtgaatcg ataagtgata tgaatgtccc
      781 acgcggtatt cttaccgaag agcaatggtt ggaagtaaag gattttcttc gtccggcaat
      841 gattaatttc attgaatgta agaatgttta tttgcaaggt gtattattcg aaaattcgcc
      901 aagttggaat attcatccgt taatgtgtac caatgttatc attgataata tattagtacg
      961 gaatccgtcc tacgctcaga atggagatgg tattgatgtg gaatcgtgca aaaatgtatt
     1021 gctgattaac agcgtgtttg atgttggcga tgatgctatc tgtataaaat cgggcaagga
     1081 tgaagaggga cggaaacgtg cccgtccaac ggaaaatatg attgtggata actgcaaggt
     1141 tttcaaaggc catggtgggt ttgtggtagg gagcgaaatg tccggtggag tacgcaatat
     1201 cgctgttcgc aactgtcagt ttctgggtac tgatgttggt ttacgcttta agagtaatcg
     1261 cggtcgggga ggagtggttg aaaatatata catcagcgat atttatatgt ttgatattgc
     1321 taccgattcg tttttattcg acttgtttta tggcggaaaa tcagcttcag aagctcttga
     1381 agatggagat gctcctgccg cagtgtctca actgccacct gtaaccgatg aaactccggt
     1441 atttcgcaat atatatgtaa agaatattgt ttcgcgcaat gcgcgccgtg ccatgtattt
     1501 taatgggctt ccggaaatga atatctcgaa tattaatgtt gaaaatgcct ggatctcatc
     1561 gcttttaggt gccgaattga gcgaatcgga tggaattaat tttaaaaaca tacatatcac
     1621 tcctcaaaaa gggcctgcct tgattttaca aaatgtgaag aacttcgatt tgaaagagtt
     1681 ttattatcca gattcccttt cggaggttgt gagaataacc ggaaaatcag tgaatataaa
     1741 attaccaccc ggaataaata aaatgaaagt tgttggaata agataatata aaaaagcaga
     1801 taaatgaaaa tccatttatc tgcttttttt atgtggctat ttatgttgtt ttctcttgtt
     1861 tggagatgtt taatgttgtt cttttatttg taagtgtttg aagaataaag attatgttgt
     1921 gtattattgc tgctgtattt ctttctggaa aatatgcaag tgcacaaaaa atgtcataaa
     1981 gtccacatcg aatagtcgat agaaaagtac tttagcaatg ttttattaca taaccttata
     2041 aaaaaatcac atgaagaaaa tttacgcaat tgcactgttc gtgctttgca tctcaaatct
     2101 ggcatccgcc cgtacctatt atgtttctac caccggaaac gattccaata ctggtacaat
     2161 agacaatcct tatctgacaa tcaatcatgt agtcgacaat ttggttcaac ccggtgatac
     2221 tatctttgtg cgtggtggca agtatatgct tgccactact atccgcatta aagccaaaca
     2281 aaatgcccgt gccgatgccc gcatttattt gtgggcttac aacaacgaga aagttgtact
     2341 ggacggaagc cagattccgc acaccgatgt caacacattc aaaatggccc gctgcattta
     2401 cctgaaccac gaagccaatt attggtatat aaaagggttg gaaatgtgca acgccaaaga
     2461 caacgggatg aaacttgagg gaagctttaa tgttgtcgaa aattgtaagt tccacgataa
     2521 taatgatacc ggactacagc ttgggatgta caaagacttc accattgaag aaacaaaatc
     2581 gttaccggca ggcgatcctc agttcaatcc gggataccag ttttgtaacc ataatattgt
     2641 aatcaattgc gattcgtatt ataactttga taaagtgcaa tacaacggga gctccgatga
     2701 tggtggtgat gccgatggtt ttgcatgtaa acttttcccc ggaccgggaa atgaattcca
     2761 tggttgccgc ggctggaaaa actccgacga taactgggat ttatacatgg tttatcatcc
     2821 ggtagttatc gacaattgct gggcctggaa agccgctttt gatgccagtg gtgtttctac
     2881 cggcggaaat ggtaacggat ttaaactggg tggcggtgga acggcgggcg gtgcagcttt
     2941 tgcgcaatcg gtaggagcgc atttggttca taattgtgtc tcgtttgaaa atgcagccaa
     3001 gggttacgac cagaataatg cttacgaagc catgtattta ttcaacaatg tgggttgggg
     3061 gaatgcatac aactaccgtt ttccaactgt tttccaatat ggaaccatgt atatgcggaa
     3121 taatattggc tttaaaccga ttactttaaa ccatgaattc ctttcggcag ataaagtggg
     3181 tgcgcaggtg cccaatacga cttacaacag ctggactaca cttgacggtt gcgatcctta
     3241 caaagatggc aataaagtga atggaacggc cgttttcaca aaagattatt cttctgaatt
     3301 taaaagcctg tcctcaacgc ttttccttgc cgaacgccaa tcggatggaa gtttgccgga
     3361 taatgatttt gcgaaattaa aagccggaag tgtatttatc gacaaaggcg agaaagtaga
     3421 aaattttgtg ttggtaccaa gtattcccgt agttaatcgg ccggttggtt atgttcagtt
     3481 gccaaacttg agtattctct acaacgatgc aagtgctgat atgggtgctt acgaaaccgg
     3541 caattttaca caaccgactt tggcattaac acaaggaagc gcgagccaaa ccgtatatac
     3601 cggctcagcg atgaataaaa ttacctataa atggggtgga gctgcaacag acgctactgt
     3661 aacaggattg cccgaaggtg taactacgga aaaagatgct gccgccaaaa caatatctat
     3721 cattggcaat ccaacttcaa cttccacttt tacggtaaca accgtgggtg gtgttacgcc
     3781 cgtttcatta tcaggaacca ttactatcag tacactcgct ccggccacat tggtatgttc
     3841 aagcaacaat acttcccaaa caataaacat cggttctgcc attacagata ttgtttttca
     3901 aatgggtgga ggtgcgactt ctttcgaagt taccggttta cctgccggct tgtcacagtc
     3961 ggtaaatgga aacacgctta cactctcggg aactccaact gccgatggcg cttatgtagt
     4021 tatagccctg ggaggaatgg tcacattgag tatttcagga aatattgccc gtgtaatccc
     4081 aacaaaagtg ttgaccggtg actggtatca tatccaggat tcgttgaatg cagttccaaa
     4141 tgacctgaaa ggggtgatta cattgacaaa tggttctgca acttatccgg ttgtctggaa
     4201 tccgggctac agcgaaagcg gaacagttcc ggccggttgt acaatcgggg ctgtgaatgt
     4261 ggagcgtggt ggctctatca gctggacatt gcctagtttg gtcgaattaa aagcgaatct
     4321 gtattttaca ggttcacgta caataaagat ttctacattg caaaatggtg tcactaccaa
     4381 ctggacttca ggttcattgg gcaaaggaac ctatgcgggt tataacctgt tggccgaagc
     4441 ggggattgcg gatacaaaat cgcctgtcac ggtaaccttc accaatatgg cgacaagcgg
     4501 tggaattcgg atgtacgatt tttatgtgaa ggtttacgat acccagactg ctgttaatca
     4561 agttgctgca gaaaagctga cattcctcat ggggcagaca gcatctgcat tgatagttta
     4621 tggcgatatt gctcaattga aagtttattc tgcatcaggt tcaattgtag ggcaatcaat
     4681 tctatcgcag gtagtcagca ctcataatat ggctaaaggt atttatatag ttcaaattca
     4741 tgataaaaac ggacgtgtag ttacacagaa atttattaaa cgataataag aaattactat
     4801 ttcagatttg cgattggttt gaaataactg gttgttattt ataaattggt tttaattcgg
     4861 gtcttgctgg ttaattcctg ttttataata cctaacaggt tcttaaaacg tgttacgtat
     4921 cccatttgct aaaaacggaa atgtgcaact ataattactc aggacgctat ttggtgagaa
     4981 atataacatt atttcatttc aagtgcttaa atatcaaaac aattactcta aaatcattat
     5041 caacaagcta tttttgcttc aaatccttaa tacaaagaaa atgtcattct caaaatcagt
     5101 cattatatca tatttatttt tagtcagttc tgtctatcat gccttcgcat tagatcctta
     5161 ttccaaacgt atggccgatg cgcaaatggc gcgtagcgga gccattacat cctgggatta
     5221 tcccaatgga cttttcgtgg aatcggttct caaagtatat aatcaatacg gtggaagcgc
     5281 ttattacaat tacgcgctga atcatgcaaa agcaacggta agtgctacga gcggtaaaat
     5341 tgcaacgggt t
//
LOCUS       DATDNM010000400         7601 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1331928, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000400 DATDNM010000000
VERSION     DATDNM010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7601
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1331928"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            38..1486
                     /locus_tag="VI413_06735"
     CDS             38..1486
                     /locus_tag="VI413_06735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanase"
                     /protein_id="HEY6914353.1"
                     /translation="MQEIKFYSGENIPLELHKVRIVQKLNLVPIERRLEALYEGGFNT
                     FRLSTKDVFLDMLTDSGTNAMSDNQLAAMMQGDDAYAGSQSFYRLEKAVQDVLGKKYL
                     LPVHQGRAAENIIALAYVKKGSLVPMNYHFTTAMAHITDKGGQIVELLYPEAYVINSD
                     HPFKGNMNIEKLEEVIKRHGASNIPFIRMEASTNLIGGQPFSVQNLRDVRAIADKFGI
                     RLVLDCSLLGENAYLVLQREEEFKGSNMKTVIHAMTSLADLCYFSARKISSSRGGGMC
                     TDRPEIIKELEALVPLYEGFTTYGGISIREIEAMAVGLYETLDETMICQSPSFIKYLV
                     DSLDAKGVPMIKPAGVLGAHVDAMQVCAHIPQTEYPAGALAAALFLISGIRGMERGSI
                     SNQRDEEGNETYADMELLRLAVPRRVFTLSQIKYVEDRMNWLYDNRLLIGGLKFVYEP
                     PVLRFFMGGLEPTSDWPQKLMAKFKEDFGESL"
     gene            complement(1598..1960)
                     /locus_tag="VI413_06740"
     CDS             complement(1598..1960)
                     /locus_tag="VI413_06740"
                     /inference="COORDINATES: protein motif:HMM:NF024835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6914354.1"
                     /translation="MLKVNILRVCEIRGIKKPLSFFKNHGFSPATATRMAGGYMNSFS
                     LETVEKLCLALNCTPNDLLEWTPSKNIAPDATHPLNDLKRDKALLANFTELVNSASLQ
                     KLEKIQEIIQRELGEVNS"
     gene            complement(2364..4724)
                     /locus_tag="VI413_06745"
     CDS             complement(2364..4724)
                     /locus_tag="VI413_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018108058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY6914355.1"
                     /translation="MSQENLAYQLPPKSILQLADYERAPQVSIDTKKEYMLLTYRSTY
                     KSLEDLNQQEISMGGLRINPVTNIASAVNYINNLKVRKVSGKDPVQVAGLPADPRITF
                     VAWSPDEKKIAFTNTSAKGVELWVLDMVSAQASKLTGAVVNANLGNPFSWYRDSKQLL
                     VRLLPKVRPALIDPKTELPTGPTVSVSSGSKSQNRTYPDLLKNATDEINFITMASSEL
                     YKVDLTGNAELFKGEDMYANESFSPDGNYLLCTTLRKPFSYVVPLNRFPQVTVVYDLK
                     GNEVKTVNDVPLSEVLPKGFMAVRKGKRQMNWRSDEPATLFYVEALDGGDPQTQADFR
                     DAVYLWRAPFAEPPTLLTKTIQRFINVIWGNASTAIIQDEWYDTRNEKTYLINPSNLD
                     ESPRVVNDRNFQDIYSDPGNFETWKNEYGKYVLAINNDCLFRIGDGHTQKGQFPFIDE
                     LDLKTLKTKRLYQSAYTDKIEEIFDIEDYKKGEALVRIQSKNEYPNYYFRNFRKQESL
                     TQVTHFPNPFESIKDVYKEVIKYKRADGVELSGTLYLPVGYDRKAKTEKLPLLIWAYP
                     AEYKDKSSAGQSSANPNEFTFPYYGSFVYWVTRGYAVLDDAAFPIVGEGKTEPNDTFI
                     EQLVSNAKAAIDAVDSLGFINRNKVAVGGHSYGAFMTANLLTHCNLFACGIARSGAYN
                     RTLTPFGFQSEQRNYWDAPDVYNAMSPFMTADKMKTPMLLVHGEADNNPGTFTLQTER
                     YFQALKGLGAPARMVILPKEQHSYVARENILHLLWEQDRFLEKYLK"
     gene            complement(5222..6055)
                     /locus_tag="VI413_06750"
     CDS             complement(5222..6055)
                     /locus_tag="VI413_06750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914356.1"
                     /translation="MKTSTLKSLIVTLAIILSSSQAFAQNMVDTRIDVKGSRYTDQMW
                     VFAVSTCTRDFDNGWDAYKMFGSVVTPQLFAWEANGNFQIDAVPDFNNTYLGFRAGED
                     SVYTFTFNHEYVDQMYTQLYLIDSVANKTVNIFASGTQYTFTVQKTDMPVKRFKIVTS
                     LPTPPVVVAPTDPVVVVTPDTVVAPTEPVVTPVDNKGKKDKVKKIKVYNVDKTLVVDN
                     TGKEKGMLKLYNAVTGKLVKTVSFNATAVTRIPTELKSGSYVVYANTSTEDVTTTVVI
                     R"
     gene            complement(6674..>7601)
                     /locus_tag="VI413_06755"
     CDS             complement(6674..>7601)
                     /locus_tag="VI413_06755"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914357.1"
                     /translation="NSGSLSDWTTGGGASSSGSNPGQYTAIPINLAGTSGIPRLIPSM
                     QGYLVKALSNSVNATLSIPYASSLLKNTDMQRVARKISNSSSSELASTIIHVTGSRYT
                     DRVWLFTGSGCTHNFDNGWDGLKNFSSSALMPQIYASEADGNYQINAVNDINNTELGF
                     YPGEDSIYTLTFIHENIDAVYPALYLIDKKTNAIIDITASGTEYKFLVHSSDPLVKRF
                     KIVTSPGMTTEAETENEGLKIFSSGHSVFDHNLSSSNGVLSIYDISGHLVSNHSFDPN
                     GITTIELKLPVGVYFIKGGVDQREVTSRLILK"
BASE COUNT         2334 a         1540 c         1449 g         2278 t
ORIGIN      
        1 attaaatctc atacattaaa aaaattattc tcacattatg caagaaatta aattctacag
       61 tggagaaaac attccattgg aacttcacaa agtacgtatc gtacaaaaat taaacttagt
      121 gcccatcgaa cgtcggcttg aagcacttta cgaaggtggg ttcaatactt ttcgcctgag
      181 caccaaagac gttttcctcg atatgcttac cgactcaggc accaacgcca tgagcgacaa
      241 ccaactggca gccatgatgc agggcgatga tgcttatgca ggttcacaaa gtttctaccg
      301 ccttgaaaaa gccgtacagg atgtgcttgg taaaaaatac ctgttgccgg ttcaccaggg
      361 tcgtgctgct gaaaatatta ttgcgttggc atacgtaaaa aaaggcagtt tggtacctat
      421 gaactaccac ttcaccactg ccatggctca cattaccgac aaaggcgggc aaattgtaga
      481 gctgctttac cccgaagcat atgtgattaa ttcggaccat ccgtttaaag gaaacatgaa
      541 cattgaaaaa ctggaagagg ttatcaaacg tcatggagct tccaacattc cgtttatccg
      601 catggaagcc tctacgaatc tcattggtgg acaaccgttc tcagttcaga acttacgcga
      661 tgtccgcgcg atagccgaca aatttggtat ccgacttgtt ctggattgta gtttgttggg
      721 cgaaaatgct tatctggtac ttcaacggga agaagaattc aaaggctcga atatgaaaac
      781 cgttattcat gccatgactt cgctggctga cctgtgctac ttctctgccc gcaaaatcag
      841 ttcttcgcgc ggtggtggca tgtgtaccga ccgcccggaa atcatcaaag aactggaagc
      901 cttggttccg ctttacgagg gtttcactac gtatggtggt atttctatcc gcgaaatcga
      961 agcaatggct gtgggtcttt acgaaacatt ggacgaaaca atgatttgcc aaagcccaag
     1021 tttcataaaa tacctggttg actcattaga tgccaaaggt gttcctatga ttaaacccgc
     1081 cggtgtattg ggtgcgcacg ttgacgctat gcaggtttgt gcacatattc cgcaaacaga
     1141 ataccctgcc ggagcattgg cagctgcctt gtttttaatt tccggtattc gcggtatgga
     1201 gcgtggatcc atatccaacc aacgcgacga agagggtaac gaaacgtatg ccgacatgga
     1261 attgcttcgc ctggcagtgc cacgccgcgt attcactttg tcgcaaataa aatatgtgga
     1321 agaccgcatg aactggctgt atgacaaccg tctgctgatt ggtggattga aattcgtgta
     1381 cgaaccaccg gtacttcgtt tcttcatggg tggactggaa cctacctccg actggcctca
     1441 aaaactgatg gcgaaattca aagaagattt tggagaaagc ctgtaaaata atggacaatt
     1501 gacaatggat aattgacaat taaaaaactg aaagccaccg aatgtactta ttcattcggt
     1561 ggcttttgtt ttatttaaaa tctataaatc gcaattatca actattgact tcccctaatt
     1621 cccgttgaat gatttcctgt attttttcta atttctgcag cgaagctgag ttgacaagtt
     1681 cagtgaagtt tgctaacaaa gccttatcac gcttcaaatc atttagcgga tgtgtcgcgt
     1741 caggagctat atttttagac ggagtccatt ccaacaaatc gttaggagta caatttagcg
     1801 ccagacaaag tttctcaaca gtttcgagcg agaaactatt catgtaccca ccggccatgc
     1861 gggtagctgt agcaggtgaa aaaccatgat tcttgaaaaa tgaaagaggt tttttaatac
     1921 cccttatctc gcaaacacga agaatattga cttttagcat attaatatag ttgagttatt
     1981 cttataaacg tcactaaagt agtgattatt tttcagaaaa gcaatcaaaa tatgtaaaaa
     2041 tacaattaaa atatgcaact tttgaatcaa acaatatgat atataaattc aacaactata
     2101 ctttaaagtc taaatacaga atatttaatt ctaaatatat aatatttaaa tcaaaaagta
     2161 atatattaaa atctgaaaac acaatattta aatcaaaatt caagtaatat tacgttcata
     2221 gaagcaaata aaaaagccat tgaatgaatt gctcactcaa tggctttttt atttgattat
     2281 tgattaaagg aagcggaagt gggtttcgct atttggaaat aacgataccc actaattatg
     2341 aattgtgcat tatgaattat gcattactta aggtattttt ccaaaaaccg gtcctgctcc
     2401 caaagcagat gcaggatatt ttcgcgggcc acgtagctgt gttgctcttt gggtagaata
     2461 accatgcggg caggtgctcc aagccctttc aaagcctgga aatagcgctc ggtttgcagg
     2521 gtaaaagtac ctggattgtt atcggcttcg ccatgcacaa gcagcatcgg cgttttcatc
     2581 ttatcggctg tcataaacgg cgacatagca ttgtagacat ccggagcatc ccagtagttg
     2641 cgttgctcgc tctggaaacc aaaaggcgtg agcgtgcggt tgtatgcccc gctacgtgca
     2701 ataccgcaag caaacaggtt gcaatgcgta agcaggttgg cagtcataaa cgcaccatag
     2761 gaatgtccgc ccacagccac tttattccgg ttgataaacc cgagcgaatc taccgcatca
     2821 atagccgctt tggcattcga caccaactgt tcgataaaag tatcgtttgg ttctgttttg
     2881 ccttcgccaa caatgggaaa tgccgcatcg tcgagcactg cataaccgcg cgtaacccaa
     2941 taaacgaaag aaccgtaata cggaaaagtg aactcattcg gattggctga gctttgtccg
     3001 gcgctgcttt tatctttata ctcggccgga tacgcccata taagcaacgg aagtttctcg
     3061 gttttggctt tgcggtcgta gcccaccggc aaatacagcg tacccgaaag ttccacgcca
     3121 tcggcacgtt tgtatttaat cacttctttg tacacatcct tgatactctc aaacggatta
     3181 gggaagtggg tcacctgagt aagcgattcc tgcttgcgga aattgcggaa ataataattc
     3241 ggatattcgt tcttcgactg tatgcgcacc aacgcttcgc cttttttata atcttcgatg
     3301 tcgaaaattt cctctatttt atcggtgtat gccgactgat acaggcgttt tgttttcagc
     3361 gttttcaggt ccagttcatc aataaacgga aattgacctt tctgcgtatg tccgtcacca
     3421 atgcgaaaca agcaatcgtt attaatggcc aacacatact ttccatactc gttcttccag
     3481 gtttcaaaat tgcccggatc agaataaata tcctgaaaat tccggtcgtt aaccactctc
     3541 ggactttcat ccaggttcga agggttaatc aggtaggttt tttcgttgcg ggtatcatac
     3601 cattcgtcct gaataattgc tgtggatgca tttccccaaa taacatttat aaaccgctga
     3661 attgtttttg tcagtaaagt cgggggttcg gcaaaaggag ctctccatag ataaacagca
     3721 tcgcgaaaat ctgcttgagt ttgcgggtca cccccatcca acgcttccac gtaaaacagt
     3781 gtagccggct catccgaacg ccagttcatt tgccgttttc ctttacgcac cgccatgaaa
     3841 cctttgggca atacttcgga aagcggcaca tcattcaccg tttttacttc atttcctttt
     3901 aaatcataca ccaccgtaac ctgcggaaaa cgattcaggg gaacaacata tgaaaacggt
     3961 tttcgcagcg tagtgcacag caaataattg ccatcaggcg aaaaggattc gttagcatac
     4021 atatcctcgc ctttaaataa ttcggcattt ccggtcaaat caactttata taattccgac
     4081 gatgccatgg ttataaaatt gatttcgtcg gtagcatttt tgagcaagtc ggggtaagtg
     4141 cggttttgcg atttagaacc actgctcaca gaaacggtcg ggcctgtggg taactctgtt
     4201 ttaggatcaa tcaatgccgg gcgaacctta ggcaacaagc gcaccagtaa ttgcttactg
     4261 tcccgatacc aactgaacgg attgcccagg ttggcattca ccaccgcacc agttaatttg
     4321 cttgcctgag ccgagaccat atccagcacc caaagctcta cgccttttgc agaagtgttt
     4381 gtaaaggcaa ttttcttttc gtcgggcgac cacgccacaa aagtaatacg cggatcggcg
     4441 ggcagacccg caacctgaac aggatctttc ccgctcactt ttcgcacctt gaggttattg
     4501 atataattaa ctgccgaggc aatgttcgtt acaggattaa ttctcaagcc acccatgcta
     4561 atttcctgtt gattcaaatc ttcgaggctc ttgtatgtgc tgcggtatgt gagcaacata
     4621 tattcttttt tggtatcaat agacacttga ggagcacgtt cgtaatcggc cagttgaaga
     4681 atcgattttg gaggaagttg gtaagcgagg ttttcttgtg acatggtttt agttattgca
     4741 aacagtaaaa atgagatgat taataattgc ttatgcattt tgtacactct taaaattatg
     4801 caaatgtaag gctttatttt taaagataaa attatgtcaa ttcaaaacat ttaaccgaca
     4861 attcttatta tcttatttta gaacaaatca tatccataac cagggtagtg caggcagcag
     4921 ttattccggt acttggtgaa acatcatccg aacgcaattc gttcactatt ttttgaatta
     4981 ctccccaaat gactttatca actttttctg ttttagatgt tttttcaaaa tcaacaaacg
     5041 atattcatta atgtattttt cgttgaattt taaaccgggg aataaaaata aatcggagaa
     5101 taatgctcaa accagttctt taagcgacga catataaaaa aagaaaaatg caaagactta
     5161 tctgtctttg cattcttcct ttaaaaaact aacctctaag caacgattaa gaactctatg
     5221 tctaacggat cactacggta gttgtaacat cttctgttga agtattagca tatactacat
     5281 agctacctga ttttaattct gtagggattc tggtaacggc agttgcattg aaactaacgg
     5341 tttttacaag tttacctgtc actgcgttat ataatttcaa catgcctttt tctttacctg
     5401 tattatcaac aacaagggtt ttatcaacat tgtatacttt tatctttttt actttatctt
     5461 tctttccttt attatcaacc ggggtaacta caggttcagt aggagctaca actgtatcag
     5521 gagtgactac tacaacagga tcggtaggag ctacaacaac cggaggagtt ggtaagctgg
     5581 ttacaatctt aaagcgctta accggcatgt ctgttttttg tactgtaaac gtgtattgag
     5641 ttccagatgc gaagatatta actgttttgt tagcaactga atcaatcaaa tacaattgtg
     5701 tatacatttg atcaacatat tcgtgattaa aagtaaaggt ataaacagaa tcttcacctg
     5761 ctctaaaacc taaatacgta ttattaaaat cagggacagc atcaatttgg aaattgccat
     5821 ttgcttccca tgcaaaaagt tgaggagtaa ctacactacc aaacatttta tatgcatccc
     5881 aaccattatc aaagtcacgg gtgcatgtag aaactgcaaa aacccacatt tggtcagtat
     5941 atcttgaacc ttttacatca attcgggtgt caaccatatt ttgtgcaaaa gcctgagaag
     6001 aagaaagaat aatagctaac gttactatca acgattttag agtagaagtt ttcataatct
     6061 tgctttttag aaggaaataa tatgtgtttt ttctcgttgt aatttctgtt cgaagattac
     6121 gttacaaaca tacttattta tttgtaatta attgatatat agtatattgt agcactattt
     6181 atttctgtgt agcatttttt acgaaataaa aaaaaagaat aatttttcag ctatatctct
     6241 caaaaaaaac aaaaaaacaa aattcctaca cctaaagagc aataaaaaga tttttataca
     6301 attccgatag ctcacaaagc agtatatttt ataaaaattg tagtatatac tcttacagca
     6361 tgctaatatt ggagtgcaaa catcaaaaaa gcaagtataa ataccgaaag tatttttaat
     6421 acagatacaa atatatttta tacttcatat acatatttta ttgtttatta accgtaatca
     6481 acgtgattat taactcaaat agccatttta aacacaaaat agtacaaaaa aaatatgttc
     6541 acttggaaat tttactaggg acagaaaaat tatctagtaa aaattagtaa taaaaaagcc
     6601 actttcaatg accggagtta tcgaaagtgg cttttttgta caatacagat tgtctaaatt
     6661 gaaactgaca acactattta aggattaatc tggaggttac ttccctctga tcgacacccc
     6721 cttttatgaa gtaaactcca accggcaatt tcaattcgat agttgtaatt ccattagggt
     6781 caaatgaatg attagaaaca agatgtcctg aaatatcgta aatggacaat actccattgg
     6841 aactacttaa attatgatcg aatactgaat gtcctgaact aaatattttc agaccttcat
     6901 tttcagtttc ggcttcggtg gtcattcccg ggcttgtaac aattttaaac cgtttaacga
     6961 gtggatcgct tgaatgaact aaaaatttat attcagttcc actagcggtt atatcaataa
     7021 ttgcatttgt cttcttatct attaaataca atgcaggata tacagcatca atattttcat
     7081 gaataaacgt gagtgtataa atagaatcct cacctggata aaagcctaat tcagtattat
     7141 taatgtcgtt cacagcgttt atctgataat taccatctgc ctcactggca tatatttgcg
     7201 gcatcaatgc agatgaacta aaatttttta acccatccca accattatca aaattatgcg
     7261 tacagccaga accagtgaac aaccacactc gatctgtata tcgggaacct gttacatgga
     7321 ttatggttga agccagttcg gaggaggaag aattagagat tttacgtgct acacgttgca
     7381 tatctgtatt tttaagtaac gaagaagcat atggtattga taatgtagca ttcactgaat
     7441 tactcaaagc tttgaccaaa tatccttgca tagatggtat cagacgtgga atgcctgaag
     7501 ttcccgcaag attgattggt atggctgtat attgtccggg gttactgccc gagcttgaag
     7561 cccctcctcc ggtagtccag tcggataaac ttccggaatt a
//
LOCUS       DATDNM010000401         4436 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1117688, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000401 DATDNM010000000
VERSION     DATDNM010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4436
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1117688"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1376
                     /locus_tag="VI413_06760"
     CDS             <1..1376
                     /locus_tag="VI413_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008763594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nucleoside kinase"
                     /protein_id="HEY6914358.1"
                     /translation="HPISKGYYCKLENLKQAITPELILQIKERVNLIISQGKRIYTEE
                     KQTAEVKELFANQAFQKDKIALFETLGTPYCRFFRIDDFIDYYNGVLMPTTDYLRIFD
                     LVPYFDGMLLRVPNRDNPVELEEIVLQPKIFDIFKEYVGWNKIMNLNNVGEFNISCRN
                     NQSFNLIKVSEALHEKKVASIADMISQRSGKVRIVLISGPSSSGKTTFSKRLSIQLMV
                     SGLKPVVLSLDNYFVDRDDTPRDENGDWDFEHLHALDLNLFNQNLKQLLAGDEVELPS
                     FNFEDGKRSFRGEKLKLTDDTILIMEGIHALNPELIPEIPVETTFKIYVSALTTISID
                     NHNWIPTADTRLLRRIIRDYRFRNYSARETIARWPSVRRGEEKWIFPFQENADVMFNS
                     ALLFELAVLKKHAEPILAEVPKYCDEYTEAHRMIKFLNYFVPIYDREIPPTSLLREFV
                     GGSSFRY"
     gene            1479..2165
                     /locus_tag="VI413_06765"
     CDS             1479..2165
                     /locus_tag="VI413_06765"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEY6914359.1"
                     /translation="MKKILLSIFLVMLTFSALQAQRRNGLIGHRIESTGTLVFTIGPS
                     YSFADPDCSKGIFGPIINQNMFDNQHVSLGYRTTLSDYYGYKVSVGYDHFTGNDIKSP
                     RNYSFETNAFQIAGQAEYYYHFGRRFRRRWPNTVYGFLGVGVIATNTALNSPVRYTYY
                     RYRDNDITPVIPYGAGYKYDIDDRLSVGAEIYWRYTFSDFLDGFKPHYPASKSNDVLE
                     GFLLTVSYQL"
     gene            complement(2227..>4436)
                     /locus_tag="VI413_06770"
     CDS             complement(2227..>4436)
                     /locus_tag="VI413_06770"
                     /inference="COORDINATES: protein motif:HMM:TIGR03296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M6 family metalloprotease domain-containing
                     protein"
                     /protein_id="HEY6914360.1"
                     /translation="VKAYPFPISFSQPDGNQLTIRLHGDESRHYQTTEDGYLLKSNAK
                     GFLTYATLSPAGKVIESNYPARNINKRTTSELRFLKTISKQAVLERAQSTSPLKTKSV
                     IQQQNILQKTFPSTGSPKSLIILVNFKDKSFVTPAPQTAFTNLLNEDGYSANGGTGSA
                     RDYFMSASLGKFAPDFDVVGPYTLPDSMAYYGKNDGNGNDLRPDYMIADACTAADNAG
                     VDFTKYDTDNDGLIDNIFVYYAGNNEAEGATANTIWPHRWSLWEAGYSGNHIFDGKIV
                     NDYTCTSELRGSSGTDMCGIGTFCHEFGHLLGIPDYYHTTSTVTINTLNEWSVMDEGC
                     YLNSGRTPPTYSAYDKFFIGWLIPEQVSTAADLSLLPIYQGKVLPANTKKQAYLLSET
                     LHNLNGGNPDPTEFFLVEYRKNIGWDAYLPAEGMLIWHIDYNQSAWRYNMPNNYGGSL
                     QTAINHMHVYLQPLSGSETTPGTAFTTGSFIPMTWSGTDINRPITAITKTNDSITFKL
                     MGGTPPPVITVNGAANNFSTMLGTPSDSQSVAITGNALKSNVQITLTDKTHFDIKRPA
                     ETNWVKSLELNPISGNISDTVQIRYNPTLGGIHTDQLVLTSNGASMVNVPVTGTASVP
                     YISGRPIMFAGKSDNSIQFPATKLNTTRVKSFNIKTTDITSTLSLAVTGPDAAMFTVS
                     VSSLSKEEVNSTNGISITVSYKPTSIGIHSAALNVSGGGLNPDKVITLQGEGK"
BASE COUNT         1220 a          833 c          954 g         1429 t
ORIGIN      
        1 aacaccctat ttcaaaaggg tattattgca aactggaaaa tttgaagcag gctattactc
       61 ccgagttgat tttgcagatc aaagagcgtg ttaatctgat catttcccag ggaaaaagaa
      121 tttatactga ggaaaaacaa actgcagagg tgaaggaatt gtttgcaaac caggcctttc
      181 aaaaagacaa aattgctctt tttgaaactc ttggaactcc atattgcagg tttttccgga
      241 ttgatgattt tatcgattat tataatggtg ttttaatgcc cacaactgac tatctgagaa
      301 ttttcgattt agtgccgtat tttgatggaa tgctgttacg ggttccaaac cgtgacaatc
      361 ctgttgaact tgaagaaatt gttcttcagc caaaaatctt tgatatcttt aaagagtatg
      421 tgggttggaa caaaattatg aatttaaaca acgttggtga atttaatatt tcatgcagga
      481 ataaccagtc gttcaatctg ataaaagtct cggaagcttt gcatgaaaag aaagtggcgt
      541 caattgccga tatgatttcc cagcgctccg gcaaggtgcg tattgtgcta atatcaggcc
      601 cttcttcatc cgggaagacg actttcagta agcgtctttc cattcagttg atggtgagtg
      661 ggttgaagcc ggttgtgtta tcgctcgaca attattttgt ggatagggat gacaccccac
      721 gcgatgaaaa tggcgattgg gattttgaac atttgcatgc actggatttg aatttattca
      781 accagaacct gaaacaattg cttgccggag atgaggttga actcccgtcg tttaattttg
      841 aggatggaaa gcgctctttt cgtggcgaaa agctaaaact caccgatgat actattctga
      901 taatggaagg aattcacgcc ttgaatcctg aacttattcc ggaaattccc gtcgaaacca
      961 cttttaaaat atatgtttcg gcacttacaa ctatttcaat agataatcat aactggatcc
     1021 cgacagccga tacccgattg ttgaggagga ttattcgcga ttaccgtttc cggaattatt
     1081 ctgcccgtga aacgattgcc cgatggccaa gtgtaaggcg tggcgaagaa aaatggattt
     1141 ttccttttca ggaaaatgcg gatgtaatgt ttaattcagc acttttattt gaactggcgg
     1201 tattaaaaaa gcatgctgag cctattttgg cagaggttcc gaaatactgt gatgaatata
     1261 ccgaggcgca cagaatgata aaatttttga attattttgt gcctatctac gaccgcgaga
     1321 ttccgccaac ttcgttgttg cgtgagtttg taggcggaag cagttttcgg tattaatgcc
     1381 aaatttataa taacttttac ggttgattag ctgacatttt caattttttt gtacttttgt
     1441 tgccaatatc ttagtaaata gaaatatacc aatcaggaat gaaaaaaata ttgttgtcta
     1501 tttttctcgt aatgcttact ttttccgcac ttcaagctca acgaagaaat ggattgattg
     1561 gtcacagaat agaaagcaca ggcacactcg tttttacaat tggtccaagc tatagttttg
     1621 ctgacccgga ttgttcaaaa ggtatttttg gtccgattat aaatcaaaat atgtttgata
     1681 atcaacacgt atctttgggg tatagaacca ctttatcaga ttattatggc tataaagttt
     1741 ctgttggtta tgaccatttt acaggaaatg acataaaatc accaaggaat tattcatttg
     1801 aaacaaatgc attccaaatc gcagggcaag cggaatacta ttaccatttt ggaagaagat
     1861 tcagaagaag atggccaaat acggtgtatg gctttttagg ggttggtgta atagccacca
     1921 atacggctct taactctccc gttaggtata cctattatag atacagagac aatgatatta
     1981 ctccggttat tccttatggg gcaggttata agtatgatat agatgaccgg ctttctgttg
     2041 gtgctgagat ttactggaga tatacttttt cagacttttt ggatggattc aagcctcatt
     2101 atcctgcttc aaaaagcaat gatgtacttg aaggattttt actgacagtt tcctatcaac
     2161 tttaatcgct taaaatgttg ccttgctctg aaaaaaatgt cacggttttc tttgagcaaa
     2221 gcatttttat ttcccttcac cctgaagtgt aattacttta tccggattta aacctccacc
     2281 agaaacgtta agtgctgcag aatgaattcc aatggaagtt ggtttataac tgacagttat
     2341 acttattccg tttgttgagt taacctcttc ttttgataat gagctcaccg aaacggtaaa
     2401 catagccgca tcggggccgg taactgccag tgacaaggtg cttgttatgt ctgttgtttt
     2461 gatattgaaa gattttactc ttgttgtatt tagctttgtt gccggaaatt gaattgaatt
     2521 atcactcttt cctgcaaaca ttattggtct gcctgaaata taaggaacag aggcggttcc
     2581 tgtcaccggt acattcacca ttgaagcacc gttgcttgta agcaccaact ggtctgtatg
     2641 aattccccct aaagttggat tgtagcgaat ttgaacagtg tcacttatat ttcctgaaat
     2701 aggattcaat tccaggcttt taacccaatt ggtttcagcg gggcgtttaa tgtcgaagtg
     2761 agttttatcg gttaatgtga tttgcacatt gctttttaaa gcgttgcctg ttatagccac
     2821 actttgggaa tcagagggtg ttccaagcat tgtgctgaaa ttattggcag ctccgttgac
     2881 agtaataacc ggtggcggtg ttccgcccat taatttaaac gttatgctgt cgtttgtttt
     2941 tgtaattgct gttattggac ggttaatatc ggttccagac caggtcatcg gtataaatga
     3001 tcctgtagta aaggccgtcc cgggtgttgt ttcagaacca cttaatggtt gcaaatagac
     3061 gtgcatgtgg ttaatggctg tttgcaatga tccgccgtag ttattgggca tattgtatct
     3121 ccacgcactc tgattataat caatgtgcca gataagcatt ccttcggccg gcaagtaagc
     3181 gtcccagcca atatttttgc ggtattcaac caaaaaaaat tccgttggat cagggtttcc
     3241 tccgttcagg ttatgcagtg tttccgaaag gagataagct tgtttttttg tgttagcagg
     3301 caggactttg ccctgataga ttggcaataa tgacaaatcg gctgcagtac ttacttgctc
     3361 aggaataagc caacctataa agaacttgtc gtaagcagaa tatgtaggag gggttcggcc
     3421 ggaattaaga tagcaccctt catccataac gctccattcg ttcagtgtat tgatggtgac
     3481 ggtggaagtt gtgtgataat aatcgggaat tcccagcaaa tgcccgaatt catggcaaaa
     3541 cgtgcctatt ccgcacatat ctgtacccga acttcccctt aattcagaag tacatgtata
     3601 atcattcaca attttcccgt caaaaatatg gtttcccgaa taaccggcct cccacaggct
     3661 ccaccggtgt ggccatattg tatttgccgt tgctccttca gcttcgttgt tgcccgcata
     3721 atatacaaat atattgtcaa tcagtccatc gttgtccgta tcatatttag tgaagtctac
     3781 ccctgcatta tcagctgctg tgcaagcatc tgcaatcata tagtcaggcc ttaaatcgtt
     3841 tccgttgcca tcattttttc catagtaagc catagagtca ggcagtgtgt atgggccaac
     3901 tacatcaaag tctggcgcaa atttacctaa cgatgcgctc ataaaatagt cgcgcgccga
     3961 gcctgtgcca ccatttgcgc tgtatccatc ttcatttaat aaatttgtga aggcggtttg
     4021 aggggcaggt gttacaaaag acttgtcctt gaaatttacc agtattatga gtgatttagg
     4081 cgagcccgta gatggaaatg ttttttgtaa gatgttttgt tgctgaatta cagattttgt
     4141 ttttagggga gaagtacttt gtgcacgttc cagcacagcc tgctttgaaa tagttttaag
     4201 gaatctgagt tctgaagtgg ttcttttgtt gatattgcgt gccggataat tgctttcaat
     4261 aactttcccg gccgggctga gtgtggcata ggtcagaaaa cctttggcat ttgattttaa
     4321 aagataacca tcctctgttg tttggtaatg acgcgattca tccccgtgca gcctgatagt
     4381 taactgattc ccatctggct ggctgaagga tattgggaaa gggtatgctt ttactg
//
LOCUS       DATDNM010000402         4478 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1758863, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000402 DATDNM010000000
VERSION     DATDNM010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4478
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1758863"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..666
                     /locus_tag="VI413_06775"
     CDS             <1..666
                     /locus_tag="VI413_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008155433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6914361.1"
                     /translation="YLPEERGLYKKMKVGEQALYLAQLRGMTKRDALKALKYWFDKFE
                     IQAGWDKKVEELSKGMAQKVQFITTILHEPKLLIFDEPFSGFDPVNADLLKREILELR
                     DNGATIIFSTHNMETVEDLCENISLVDQSKIVLQGNVAEIRASHATNTFVVRSANAFE
                     GNGFEILSQTFKNNVFESKIKKQHAESNNTLLASLIKQTEILSFEELLPSMNDIFINT
                     VKR"
     gene            1087..2355
                     /locus_tag="VI413_06780"
     CDS             1087..2355
                     /locus_tag="VI413_06780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009018235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6914362.1"
                     /translation="MKKSFILLTFLTPVLFAGMIALVIWLGSIKDDKVKTIVVIDKTH
                     QYKDVLKSNESYNFEFVDADVDELKKQNQQEEHFTALLYITGDLMKDSTAATLFSEKQ
                     VNMELKSYVAGLLNKYIEQQKLAAYNIPNLKEMVEESRTNIDLKTIKWGENGNEKEGS
                     AELALIIGMISAFIIYMFIVIYGAQVMSGVVQEKTNRIVEVIISSVKPFELMMGKIIG
                     IAMVGLTQFLLWVVLTGVISLAMGAFFGGNVDVSSLQKMGQMGMHPAQTNVMPSEMQS
                     LFTALSSLNYVEIVSLFIVYFLGGYLLYASLFAAIGSAVDNETDTQQFSLPIMLPIIF
                     AIYAGIFSAENPDGPLAFWCSMIPFTSPIVMMVRLPFDVPVWQIALSLAILVLSFIGT
                     TWMAGKIYRTGILMYGKKPSWKELWKWLRY"
     gene            2381..2866
                     /gene="ybaK"
                     /locus_tag="VI413_06785"
     CDS             2381..2866
                     /gene="ybaK"
                     /locus_tag="VI413_06785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HEY6914363.1"
                     /translation="MALEKTNAARLLDKAGISYQLIAYTVDEADLSAIHVAEQLNQSV
                     EMVFKTLVLKGDKTGYFVCIVPGAEELDLKKAAKISGNKNCDMIPMKELLATTGYIRG
                     ACSPLGMKKHFPTFIHESCLGFDAIYVSAGKRGLQLHVNPADLIAEVKATVGYLIVSQ
                     P"
     gene            2943..3836
                     /locus_tag="VI413_06790"
     CDS             2943..3836
                     /locus_tag="VI413_06790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005928829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HEY6914364.1"
                     /translation="MLPPSLNPGEQIRIVSPSGVIDPQFIDGASNVLAEWGLQVTEGA
                     FARTEYGRFAGTAEQRMGDLQQALDDPDVKAILCSRGGYGLAQIVDKLDFSGFQKSTK
                     WLVGFSDITILHNVITNLGIASIHGIMAKHLTELPTDSDQSKGLKDILFGKLPQYEIP
                     SELLNCTGVANGKLIGGNLSVLMGLRGSRFDLPYKNNILFIEDIAEKPYHIDRMMQNL
                     RFSGALSQLSGLVVGQFNDCEEDPQMKQTIVEIIRNAVSDYTYPVSFNFPSGHVDYNL
                     PLILGADVCLNVASDTVRLTF"
     gene            3946..>4478
                     /locus_tag="VI413_06795"
     CDS             3946..>4478
                     /locus_tag="VI413_06795"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEY6914365.1"
                     /translation="MPLQRHILLFLGFIFSILLSVANAIDMSATDSISASSRIDYLSA
                     SSVSITDSIINYGKQFLNRPYRYGSAGADTFDCSGFTSYVYRNFGYNLEHSSAEQAQQ
                     FDTVKRTHLKTGDLVFFAGSRKSKRVGHVGIVTTAGDDGKFSFIHASCDKGVTISSSE
                     EPYYSRRFIKANRVIGGT"
BASE COUNT         1289 a          825 c         1045 g         1319 t
ORIGIN      
        1 tacctgcccg aagaacgggg gttgtacaag aaaatgaaag tgggcgagca ggcgctgtac
       61 ctggctcaac tgcgtggcat gaccaagcgc gatgcattga aagccctgaa atactggttc
      121 gacaaatttg aaatacaggc cgggtgggac aaaaaggtgg aagaactctc caaagggatg
      181 gcgcagaaag tgcaatttat cactaccatt ttgcacgagc ctaaactgct tattttcgat
      241 gaaccgttca gtgggttcga tccggtaaat gccgatttgc tgaagcgcga aatactcgaa
      301 cttcgggaca atggagccac catcattttc tcgacacaca atatggaaac ggtggaagac
      361 ctgtgcgaaa atatctcgtt ggttgatcaa tccaaaattg ttcttcaggg taatgtggct
      421 gaaatccggg cgtcgcatgc taccaatacg tttgtggtgc ggtcggcgaa tgcattcgaa
      481 ggaaacggct ttgagatttt atcccaaaca tttaaaaata atgtttttga aagcaagatc
      541 aaaaaacaac acgctgaaag taataacacc ttgctggctt cgctgataaa acaaaccgaa
      601 attctttctt tcgaagaatt gttaccaagc atgaatgata tatttattaa tacggtgaaa
      661 agataacccc taacccctga aggggaattt tgctcgtaca ttttattcga aaataaatat
      721 tgttgagttg cacacagttt gttagcgagt gaccttgacc ggtgagccaa aaaacaagag
      781 agaaaagcgc aaaaatactc cttgtttgac gaccggagag aggagtttgg aggattttag
      841 cttttcgaac gttagttttt tgagtgaagc gggtccggtc ttgacttttt tgcttacttt
      901 ttgtggcaag acaaaaagta agtcagggtt tggggcggaa gccccgataa atgaaacatt
      961 tttttttcaa aacacattat aaattaaaaa cttagtcctc tgtcagttgg aggatcctgg
     1021 attaatagat taagcattat gtctaaaata tcattaataa taaaacggga atacagcacg
     1081 cgggtaatga aaaaatcatt tatcctgctt acgtttttga ctcccgtgct ttttgcagga
     1141 atgattgccc ttgttatttg gttgggtagt atcaaagacg acaaagtgaa aacaatagtg
     1201 gtgattgaca aaacccacca gtataaagac gtgctcaaaa gtaacgaatc gtacaatttt
     1261 gaatttgttg atgccgatgt tgacgagttg aaaaagcaaa accaacagga ggagcatttt
     1321 acagctttgc tttatattac aggcgacttg atgaaagatt ccactgcggc caccttgttt
     1381 tcggaaaaac aggtgaatat ggaactcaaa agctatgtgg ccggactgct gaacaaatat
     1441 attgaacagc agaagctggc agcctacaac attcccaacc tgaaagaaat ggtggaagaa
     1501 tcgcgcacca acatcgacct gaaaactata aagtggggcg aaaatggcaa cgaaaaagaa
     1561 gggtcggccg aattggccct gattattggt atgatttccg cctttattat ttacatgttt
     1621 atagttattt acggggctca ggtaatgagc ggcgtggtgc aggaaaaaac caatcgcatt
     1681 gtggaggtta tcatttcttc ggtaaaacca ttcgagttga tgatggggaa aataatcggt
     1741 atcgctatgg tgggactgac acaattttta ttgtgggtgg tgcttaccgg agttatttcg
     1801 ttggcgatgg gtgcgttttt tggcgggaat gtggatgtaa gttcgctaca gaaaatgggg
     1861 caaatgggca tgcacccggc tcaaaccaat gttatgccgt ccgaaatgca atcattgttt
     1921 acagctttaa gcagtttgaa ttatgttgaa atagtatcat tattcattgt ttattttctg
     1981 ggaggttatt tgttgtatgc ctcgttgttt gcagccattg gttctgcagt ggacaacgaa
     2041 accgatacgc aacaattttc gttgcccatc atgctaccta tcatatttgc catttatgcc
     2101 ggtattttca gtgccgaaaa tcccgatgga ccgttggctt tctggtgctc catgattccg
     2161 tttacttcgc ccattgtcat gatggttcgt ttgccgtttg atgtgcctgt gtggcaaata
     2221 gctctttcat tggctatact tgtattgtca tttattggta caacgtggat ggccggtaaa
     2281 atttaccgca ccggaatatt gatgtatggt aaaaaaccaa gttggaagga attgtggaag
     2341 tggttgaggt attaataaaa aagttaaggc agcgtaaata atggctttgg agaaaacaaa
     2401 tgcggcccgg cttttggata aggccgggat cagctatcaa ttaattgctt atacggtaga
     2461 tgaagccgac ctgagtgcta ttcatgtggc tgagcaactg aatcaatcgg ttgaaatggt
     2521 ttttaaaact ttggtgctga aaggcgataa aacaggttac tttgtttgta ttgttccggg
     2581 ggcagaggag ctcgatttga aaaaggcagc caaaatatcg gggaataaaa actgcgacat
     2641 gatacccatg aaagagttgc tggctacaac aggatatatt cgcggagcct gttctccgtt
     2701 gggaatgaaa aagcatttcc cgacttttat ccatgagagt tgcctgggct ttgatgccat
     2761 ttatgttagt gcagggaaaa ggggtttgca attgcatgtc aatccggccg accttattgc
     2821 tgaagtaaaa gctactgttg gatatttgat tgtttctcaa ccttagcaag gcatggctca
     2881 gaatttaccg cagaattatt tttatctttg cagaactacg aaataaaaac cagcattaca
     2941 gcatgttacc accctctctg aaccctggcg agcagattcg cattgtttct ccttcgggag
     3001 tgattgatcc gcagtttatc gacggagctt ccaacgtgct tgccgaatgg ggtttgcagg
     3061 ttaccgaagg tgcgtttgcc cgaacggaat acggccgttt tgccggaaca gcagagcagc
     3121 gcatgggcga tttgcaacaa gcgcttgacg accctgatgt gaaagccatt ctgtgcagtc
     3181 gcggcggtta tgggttggct caaattgtag ataaactgga tttctcaggt tttcaaaaat
     3241 cgacgaaatg gttggtgggt ttcagcgaca tcaccatttt gcacaatgtt attacaaatc
     3301 tgggtatagc gtcaattcat ggcattatgg ccaaacatct taccgaatta cccactgatt
     3361 cggatcagtc aaaaggattg aaagacattt tgtttggcaa acttccacaa tacgaaattc
     3421 cttccgaact tctgaattgt acaggagtgg ccaatggaaa actgattggt ggaaacttat
     3481 cggtattaat gggcttgcgt ggaagccggt ttgatttacc ttataaaaac aacatcctgt
     3541 ttatcgaaga tattgccgaa aagccgtatc atatcgaccg aatgatgcaa aacctccggt
     3601 ttagcggggc gttgtctcaa ctttcagggc ttgtagtggg tcagtttaac gactgtgagg
     3661 aagatccgca gatgaaacaa actatcgtag aaattatacg aaacgctgtg agtgattata
     3721 cttatccggt ttcttttaat ttcccgtcag gtcatgtgga ttacaattta ccgttgattt
     3781 taggtgcaga tgtgtgctta aatgtagctt cggatacagt aaggttaact ttttgataat
     3841 ttctgaaaag aatctctttt tttattaaaa agggaaaaac gggtctgatt ttttgcctga
     3901 aaaaactatc tttgcaaata tagtaattct cagaccgatc tcgttatgcc gttgcaaaga
     3961 cacattcttt tattccttgg atttatattt tctatattac tttcggttgc aaatgccatt
     4021 gacatgtctg caactgactc tatatctgcc tcttcacgta tcgattactt gtctgcaagc
     4081 tctgtatcga ttaccgattc gataattaac tatggaaaac aatttctgaa caggccttat
     4141 cgctatggtt cagctggtgc agataccttc gactgctctg gttttacatc ctatgtttat
     4201 cgtaattttg gatataatct tgaacactca tcggccgagc aagcccaaca attcgatacc
     4261 gttaagcgaa ctcatctgaa aacgggtgat ttggtttttt ttgctggtag cagaaaaagt
     4321 aaaagagtgg gtcatgtcgg aattgtgact acagcaggag atgatggtaa atttagtttt
     4381 attcatgctt catgcgataa aggtgttaca atttcaagct ctgaagaacc ttattacagt
     4441 cgccgattta ttaaagctaa ccgtgtaatt ggtggaac
//
LOCUS       DATDNM010000403         2556 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1332061, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000403 DATDNM010000000
VERSION     DATDNM010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2556
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1332061"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1292
                     /locus_tag="VI413_06800"
     CDS             <1..1292
                     /locus_tag="VI413_06800"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005848876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HEY6914366.1"
                     /translation="YNKLTVAELQKLVPVINWTEYLKALGLKNTKHLSVSQKESLIEV
                     GKIIESEPIQNQIAYLQWKLIDESASYLSDAIYAQNFDFYGKVLSGKKEQRPRWKRSV
                     DIVDGVLGEAVGQMYVKKYFPPAAKERMLKLVGNLQKSLGERINALPWMGDSTKAKAQ
                     EKLGTFYVKIGYPNKWRDYSKLAINKDSYFANIQRSNRFNHAYNFSKAGKPVDKDEWL
                     MTPQTVNAYYNPTTNEICFPAGILQPPFFDMNADDAFNYGAIGVVIGHEMTHGFDDQG
                     CQFDKDGNLKNWWTATDKKNFDARAKVLSDYFDAIEVAPGVKANGKFTLGENIADHGG
                     LQVSFNAFKTATAAKPLDKDDGFTPEQRFFLSYANVWAGNIRPEEILKLTKSDPHSLG
                     RWRVNGALPHIQAWYDAFGIKSDNKLFVPLDKRVSIW"
     gene            complement(1378..>2556)
                     /locus_tag="VI413_06805"
     CDS             complement(1378..>2556)
                     /locus_tag="VI413_06805"
                     /inference="COORDINATES: protein motif:HMM:NF040218.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BACON domain-containing carbohydrate-binding
                     protein"
                     /protein_id="HEY6914367.1"
                     /translation="PLKSQTTLLPGDIAFIGINTDGSTDDFDFVLLTPISSGTVINFT
                     DCGWNHSTGFNTIETESHCTWTASSALPAGTIVNVITNNGNTRPIASTGIFTGDSMLV
                     SIAGDQIIAYQETKASPKFLAAISFNQNSISQPGSDFDGASTTNSTTALPEGLTMGIN
                     AVHIYQSGTYQEHDNGRYKGTLNTGTKLELLKRINLLSNWETNDNTVFTLNPFPASFT
                     LNTSTLSVSPNNSITYPKTGGTTNLNVTSNTIWAVSSNQTWLTLNKRSGTENAVVTLS
                     AASNGTSADRTATVTFTSSGLSPVTITITQAGTVTGLPETTINTISLYPNPVNDGFYI
                     QNVDRSIESVSVYDLRGIEMFSQQVIGNYINTINLKHGVYIVKLKTADEIIEKKIMKN
                     "
BASE COUNT          750 a          480 c          510 g          816 t
ORIGIN      
        1 attataacaa actgacggtt gctgagcttc agaaactcgt acctgttatt aactggaccg
       61 aatacctgaa agctcttggc ttaaaaaata caaaacattt gagtgtttct caaaaggaat
      121 cgttgattga agtaggtaaa atcattgaat cagagccaat tcaaaaccag attgcttacc
      181 tgcaatggaa actgatcgat gaatcagcca gttacttgag cgatgctatc tatgcacaga
      241 attttgattt ctatggtaag gttctatctg gtaaaaagga gcaacgtccg cgctggaaac
      301 gctctgttga tattgtcgac ggtgtattgg gagaagccgt aggacagatg tatgtaaaaa
      361 aatatttccc gcctgctgcc aaagaacgta tgcttaaact ggtaggcaac ttacagaaat
      421 cattgggcga acgcattaat gctttgcctt ggatgggcga ttctacgaaa gctaaagcgc
      481 aagaaaaatt ggggactttc tatgtaaaaa taggttatcc aaataaatgg cgcgattatt
      541 ctaaacttgc aattaataaa gattcttatt ttgctaatat acaacgttct aatcgtttca
      601 atcacgctta taatttcagt aaagccggca agccggttga caaggatgaa tggttgatga
      661 ctcctcaaac agtaaatgct tattataacc caacaacaaa tgaaatttgc ttccctgctg
      721 gtattcttca gccgccattc tttgatatga atgccgacga tgcctttaat tacggtgcta
      781 ttggtgtggt tattggccac gaaatgacac atggatttga cgatcaaggc tgccagtttg
      841 ataaagatgg caacctcaaa aactggtgga ctgcaactga taagaagaac ttcgacgctc
      901 gtgcaaaagt gctttctgac tattttgatg ccatcgaagt ggctccggga gtaaaagcaa
      961 acggtaaatt taccctgggt gaaaacatag ccgatcatgg tggtttgcag gtatcattca
     1021 atgcatttaa aacagcaaca gcagctaaac cattagataa agatgatggg tttacgcctg
     1081 aacaacgttt cttcctttcg tatgccaatg tttgggccgg aaatatccgt cctgaagaga
     1141 ttttgaagct gactaagtca gatcctcact cgcttggcag atggcgcgta aacggcgctt
     1201 taccgcatat tcaggcatgg tatgatgcct tcggtattaa atcagacaat aagttgtttg
     1261 ttccgcttga taaacgggtt tctatctggt aattttcatt tactctaatt taaaacaggc
     1321 tgctacattt ttacatgtag cagcctgttt tgttttgaat aatatacttt ctattaatta
     1381 gtttttcatt attttctttt caattatttc atctgcagtt tttaatttta caatatacac
     1441 tccatgtttc aggtttattg tatttatgta attaccaata acttgctgac tgaacatctc
     1501 aattccacgc aaatcataca ctgaaacaga ttcgatggat cggtctacgt tttgaatata
     1561 gaaaccatca tttaccgggt taggatacaa agaaattgta tttatagtcg tttccggtaa
     1621 cccggttact gttccggctt gtgtaatagt aatagttacc ggacttaaac cactcgaagt
     1681 aaatgtaacc gttgctgtac ggtctgccga tgtaccgtta gaagctgcgc ttaaagttac
     1741 aactgcattc tcagttccac ttcttttatt taatgtcaac catgtttgat tagagctaac
     1801 tgcccaaatc gtatttgaag taacattcag attcgttgtg ccccctgttt ttggataggt
     1861 gattgaattg tttggcgaca cagataaagt agaagtgttg agagtaaacg atgccggaaa
     1921 cggatttaaa gtaaatacag tgttatcatt tgtttcccaa ttgctgagca gattaattct
     1981 tttgagcaat tcaagttttg taccagtatt caatgttcct ttatatctgc cgttatcatg
     2041 ttcctgataa gttcctgatt gatagatatg aaccgcattt atccccattg tcaaaccctc
     2101 aggtagcgca gtggttgaat ttgtagttga agctccatca aaatcgcttc caggttggga
     2161 tatgctgttt tgattaaagc ttattgcagc taaaaatttt ggactagcct ttgtttcctg
     2221 atacgctata atttgatcac cagcaattga aaccagcatt gaatcacctg taaatatacc
     2281 cgttgatgct atcggccgtg tattgccatt gttggtaatc acatttacta tcgtaccggc
     2341 aggtagagct gaacttgctg tccaggtgca atggctttct gtttctatag tattgaagcc
     2401 tgtgctatga ttccacccac aatctgtaaa attaattact gttccactgc ttattggagt
     2461 cagtaaaaca aaatcaaaat catcagtaga accatcagta tttatgccaa taaaagcaat
     2521 gtctcctggt aggagggttg tttgactttt taatgg
//
LOCUS       DATDNM010000404         5142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_584965, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000404 DATDNM010000000
VERSION     DATDNM010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5142
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_584965"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            339..890
                     /locus_tag="VI413_06810"
     CDS             339..890
                     /locus_tag="VI413_06810"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEY6914368.1"
                     /translation="MERIGERIKRKREQQSMQLNDLAKKVGISSSALSQIERAKTYPS
                     ILTLKLIAESLQTTVGELIGENDSIANVPVFSKTDKMLICGNESGAQMFVLSQQNLNK
                     QVDPFLLRFRQKSNSADLFKTVSGYLYGYVLCGEIQFEIDSKSYVVQAGDSIYFNTKR
                     NFRFENLFDGISEMLCVLSNSHH"
     gene            1018..2910
                     /locus_tag="VI413_06815"
     CDS             1018..2910
                     /locus_tag="VI413_06815"
                     /inference="COORDINATES: protein motif:HMM:NF027585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4914 family protein"
                     /protein_id="HEY6914369.1"
                     /translation="MSELIDVLKGKGITLPEEVKNVLENCAGYTVYNSVEELQDAAVG
                     GKGNLSYEVNYDISGKGIYTEAIVHKVTNGISANFTDPNMRRRDPNTMAIADDKPTDK
                     ITFKNKYGYDFSSLKEETFDWLKFQELAVFFYFAGRENIGVGGIAICPANAGFFAMGL
                     AMLQVMMPVDSLTSDFTIDSVLYVAPTFRHTHFEGKQVVVHNRTDTRHEIFAYNLYPG
                     PSAKKGLYGALLDKGEKEGWVTTHCSTVQAVSPYDNITTFMHEGASGGGKSEMLQHII
                     REPNGQVLIGKNSVTGESRLINIPLFSSFNPVTDDMGMCPQSIQKNNGKLSVIDAENS
                     WFIRVDGINEYGDDPSLEKITLNPSKPLLFLNIATNPGSTALIWNHIEDAPGKPCPNP
                     RVILPRDIVPNVIGTAVSVDVRSFGVRTPPSSLENPNYGIIGMFHVLPPALAWLWRLV
                     SPRGHANPSIIGGGSGMGSEGVGSYWPFATGKRVHHANMLLEQIINTPNTMFTLVPNQ
                     FIGVWKVGFKPQLFMREYLTRRGNAKLRKDQYQPAGCSLLGYELNYLTIEGVKIPSRF
                     LQVHKQPEMGMEGYNAGAEKLFEFFKEELQQYLTPELNPKGREIIEACLRGASVEEYE
                     SIITVE"
     gene            3026..4000
                     /locus_tag="VI413_06820"
     CDS             3026..4000
                     /locus_tag="VI413_06820"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:TIGR00057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEY6914370.1"
                     /translation="MKIITEESLELAAECLRNGGLVAFPTETVYGLGANALDPLAVAK
                     IFEAKERPTFDPLIVHIASLSQLDDLYAQPIHPLVKELAQHFWPGPLTIVQPKSDLVP
                     DLVTSDLDSVAVRMPSHPLAQRLLQLAGVPVAAPSANKFGQLSPTSYKHVAKQNMPID
                     FLIAGDKHEKAVGIESTVVSIDNGICTILRPGVITAADLQKAIPGLEVIIPGKNVKLT
                     SPGLLNSHYSPLKPLYFLKEEKTVLPEKSGLIVHSSHADTLNAKKVIITSGEKNLLEV
                     AANLFASLHKMEEDVDVEQIYIEPIEEKGIGIAIMDRLKKATYQYAAE"
     gene            4004..4564
                     /locus_tag="VI413_06825"
     CDS             4004..4564
                     /locus_tag="VI413_06825"
                     /inference="COORDINATES: protein motif:HMM:NF019204.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1543 domain-containing protein"
                     /protein_id="HEY6914371.1"
                     /translation="MKDIKLFYLVLGATLPGKHTEQHDALFCIGRELTELVPVAENHW
                     ETSAEVHLDGWREVTNVDGYEISVVEKGKAEKNGLNLFFINLGGYKTGSFSEHHCQQL
                     VVAPTIAEAVKIAKQNVFCQEYTVNENSRCHVDNKYGIDVEVSAEFLDILLPEDKARY
                     SLSITPAANLTEDKLHIGYFPLDKFK"
     gene            4631..>5142
                     /locus_tag="VI413_06830"
     CDS             4631..>5142
                     /locus_tag="VI413_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018109979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY6914372.1"
                     /translation="MDNLLKQIDFIKEIDKIKYIQRKTKLFNSDRPENDAEHSWHLAM
                     MTLVLAEHSDSPIDVLKVLKMVLIHDIVEIDAGDTFIYDTVKNHSNTVEELAAAKRIF
                     GLLPTEQAEELIALWIEFEEEKTNEAKFAKSMDRLEPLLQNISNNGGTWKEFGVDYQK
                     VYDKKKAIKEG"
BASE COUNT         1589 a          853 c         1156 g         1544 t
ORIGIN      
        1 ttcctaaaaa agaagaaggt ggagaagctt ttcatgaaaa gattggaaaa aataaaaaag
       61 taaacatgaa agttcgtcgt gcggaagcga tgaaaataaa atacaagaaa cctaaaacga
      121 gaggtcagaa aaagaaatag atttctaaat tataaaatct tatttaatct gtaaatcagt
      181 tacttgtttt gaatccctgc aattttgatt gctgggattt tttattttca ctcctctgta
      241 aatgtcaaaa ttggatcgtg ggaatagatt ggtaattaag tgctacttca tttattaaat
      301 gattttcgta tctttgcgca aaatctatta tactatatat ggaaagaatt ggagaaagaa
      361 taaaacgaaa gcgcgagcag caatcgatgc aactgaacga tttggccaag aaggttggaa
      421 tcagttcaag tgcactttcg cagatagaaa gagccaagac ttatccttca attttaaccc
      481 ttaaattaat agctgaaagc ttgcagacaa cagtcggaga gttgattgga gagaatgatt
      541 caatagccaa tgttcctgtt tttagtaaga ctgacaaaat gttgatctgc gggaatgaat
      601 ctggagcgca gatgtttgtg ctttcgcagc agaatttaaa taagcaggtc gatccttttt
      661 tgctgaggtt ccggcaaaag tcaaacagtg cagatttgtt caaaacagtg tcggggtatt
      721 tgtacggata tgttttatgt ggtgaaattc agtttgaaat tgatagtaaa agctatgtag
      781 tccaggctgg tgacagtatt tactttaata ccaagcgtaa tttcagattt gaaaatcttt
      841 ttgacgggat tagcgaaatg ttgtgtgtac tttcaaacag tcatcattaa aattgtgtta
      901 aaataaagtg ttgcttcatt aattaagaaa caatttacta cctttgccga agtttttaaa
      961 ggtggtcaac caaaatgtct caaaatttgg ttagttaata tttgaatttg ttttattatg
     1021 agtgagttaa tagatgtatt aaaaggaaaa ggtattacac tccctgaaga ggtaaaaaat
     1081 gtattggaaa attgtgccgg ttatactgtg tacaatagtg ttgaagaatt gcaggatgca
     1141 gccgtaggcg gtaaaggaaa tttatcttac gaggtaaatt atgatatatc tggaaaaggt
     1201 atttataccg aggctattgt gcacaaagtt acaaatggta tctctgcaaa ctttactgat
     1261 ccgaatatgc gtcgccgcga tccgaataca atggcaattg ccgatgataa acctacggac
     1321 aaaataacgt ttaaaaataa atacggttac gacttttctt cattgaaaga agaaaccttc
     1381 gattggttaa aatttcagga gttggcggta ttcttttatt ttgccggacg tgagaatatt
     1441 ggtgttggcg gtattgccat ttgcccggct aatgcaggct tttttgctat gggattggcc
     1501 atgttgcagg taatgatgcc tgttgattca ctgacatctg attttacaat tgattcagtt
     1561 ctttatgtag ctcctacgtt ccgccatact cattttgagg gcaaacaagt tgtggttcat
     1621 aaccgcactg acactcgtca tgaaattttt gcctacaacc tgtatcccgg tccaagtgcc
     1681 aaaaaaggtc tttatggagc gttgcttgac aaaggtgaaa aagaaggttg ggtgactaca
     1741 cactgttcca cagttcaggc ggttagccct tatgataata ttaccacatt tatgcacgaa
     1801 ggtgccagcg ggggtggtaa gagtgaaatg ctccaacaca ttattcgtga accgaacggt
     1861 caggttttga ttggtaaaaa ttcagttaca ggtgaaagtc gcctgattaa tatcccatta
     1921 ttctcatcct tcaatccggt tacagatgat atgggtatgt gtccgcaaag tattcagaaa
     1981 aataacggga aactgtctgt tattgatgct gagaactcgt ggtttatccg cgtagatggt
     2041 attaacgaat atggcgatga tccgtccttg gagaaaatta cgttgaatcc gtcgaaacct
     2101 cttttgttct taaatatcgc tactaacccc ggaagtactg cccttatttg gaatcatata
     2161 gaagatgctc cgggaaagcc ttgtcccaat ccacgtgtta ttttaccacg cgacattgtt
     2221 cccaatgtaa ttggcacagc cgtttcggtt gatgttcgta gttttggggt tcgtactcct
     2281 ccgagttctt tagaaaatcc aaattatgga attattggaa tgttccatgt tcttcctcct
     2341 gcactggcct ggttgtggcg tttagtttct ccacgtggac atgccaatcc aagtattatt
     2401 ggcggtggct cgggaatggg ttcggaaggt gtaggttctt attggccttt tgcaaccgga
     2461 aaacgtgttc atcatgccaa tatgttgctg gaacagataa ttaacactcc gaataccatg
     2521 tttacattgg ttccaaatca atttattggt gtgtggaaag taggtttcaa accacagtta
     2581 tttatgcgtg aatatctgac ccgccgtggt aatgccaaac tgcgtaaaga tcaatatcag
     2641 ccggctggtt gttcgctctt aggatatgaa cttaactatc tgactattga aggggtgaag
     2701 attccgtctc gtttccttca ggttcataaa caaccagaaa tgggtatgga gggatataat
     2761 gcaggtgctg aaaaattgtt tgaattcttt aaagaagagt tgcaacaata cctgactccg
     2821 gaacttaatc cgaaagggcg tgagattatt gaagcctgtc tgcggggggc ttctgtagag
     2881 gaatatgaaa gcattattac agtagaataa aaatactttt tgaccataac atagttgaca
     2941 accgctgatt ttgagtactt ttgtgcaccg aaatcggcgg ttgttttttg aaaaaaccgg
     3001 tttcaaaatc aggttttata ttgaaatgaa gataattaca gaagaatcgt tggagctggc
     3061 agctgagtgc ctcagaaatg gcggattggt agcttttccc actgaaacag tttatgggct
     3121 gggtgctaat gcgttagatc cgttggcagt tgcaaaaata tttgaggcta aggaacggcc
     3181 tacttttgat ccgttgattg tgcatattgc gtcgttatcg cagttggatg atttatatgc
     3241 acagccaatc catccgttgg taaaagaact ggcccaacat ttttggccgg gaccactgac
     3301 tattgtgcag cctaaatcgg atttggttcc cgatttggtt acttcagatc tcgattctgt
     3361 agccgttcgt atgccttcac atcctctggc tcaacggttg ctgcaacttg caggtgtacc
     3421 tgtagcagct ccgagtgcga ataaattcgg acaattaagt cctacgagct acaagcatgt
     3481 tgccaagcaa aatatgccga ttgatttttt gatagcgggt gataagcacg aaaaagcagt
     3541 tggaattgaa tcaaccgttg tttcaataga taatggcatt tgtactattt tgaggccggg
     3601 tgttataact gctgccgatt tacaaaaagc gattcccgga ttggaagtta taattccggg
     3661 gaaaaatgtg aaactcactt cacccggatt attgaacagt cattattctc cgttgaaacc
     3721 tttgtatttt ttgaaggaag aaaaaactgt tttacctgaa aaatctggat tgattgttca
     3781 ttcatcacac gcagatacat taaatgcaaa aaaagtaata attacttccg gtgaaaagaa
     3841 tttgcttgaa gtggcagcca atttatttgc ttcgttgcat aaaatggagg aagatgttga
     3901 tgttgagcaa atttacattg aaccaataga ggaaaaagga atcggtattg ccattatgga
     3961 ccgattgaag aaagcaactt atcaatacgc agcagaataa gtaatgaaag atattaaact
     4021 tttttatctg gttttgggtg cgaccttgcc gggaaaacat accgagcagc atgatgcttt
     4081 attttgcata ggcagagagc tgacagaact tgtaccggta gctgaaaatc attgggaaac
     4141 aagcgccgaa gtgcatttgg atggttggcg tgaagtaacg aatgtagatg gttatgaaat
     4201 ttcggtagtt gaaaaaggaa aagccgaaaa gaatgggctg aacctgttct ttatcaattt
     4261 gggtggttac aaaaccggtt cattcagcga gcaccattgt caacagttgg ttgtggcgcc
     4321 gacaatagct gaagctgtga aaatagcaaa gcagaatgtg ttttgtcagg aatatacagt
     4381 aaacgaaaac tcccgctgcc acgttgataa taaatatggt atcgatgtgg aggtttcagc
     4441 ggagtttttg gatattctgc ttccggaaga taaagcgaga tattctttat ccattactcc
     4501 agctgcaaat cttacagaag ataagcttca tataggatat tttccactgg ataagttcaa
     4561 ataatactgt tggtcggatt tgtatccggc ctttttttat tatgattaaa tactaagtgc
     4621 acatatgaat atggataatc tattgaaaca gattgatttc attaaagaaa tagacaaaat
     4681 aaagtatata cagcgtaaga caaaattatt caacagcgac agacctgaaa atgatgccga
     4741 gcatagttgg catctggcga tgatgactct tgtactggca gaacattcgg atagtccgat
     4801 tgatgtgctg aaagtgctga aaatggtgct gattcatgac attgtagaaa tagatgcagg
     4861 tgatacattt atttatgata ccgtgaaaaa ccacagcaat actgtagagg aactggctgc
     4921 tgccaaacga attttcggac ttcttcccac agagcaagca gaagagttga ttgctttatg
     4981 gatcgaattt gaagaagaaa aaaccaacga ggctaagttt gctaaatcca tggaccgatt
     5041 ggagccatta ttacaaaata tttcgaataa tggaggcacc tggaaagagt tcggagttga
     5101 ttatcaaaaa gtatatgaca agaagaaagc tataaaggaa gg
//
LOCUS       DATDNM010000405         4164 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1545136, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000405 DATDNM010000000
VERSION     DATDNM010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4164
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1545136"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            594..1061
                     /locus_tag="VI413_06835"
     CDS             594..1061
                     /locus_tag="VI413_06835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914373.1"
                     /translation="MQPLKLIVIGLLISFAATAEAQVSIRVNIGMPPPWGPQVEDDVR
                     YYYLPDVDAYYDINTSLFICFYNGHWVHRRHLPDRYQNYDLYHGRKIVVNNYRGNTPY
                     SHCNYHKNRDYRMIKRSERSHHRDYEDHYRRSDKNHGEGNMKFARGKGKGRKD"
     gene            1146..2021
                     /locus_tag="VI413_06840"
     CDS             1146..2021
                     /locus_tag="VI413_06840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914374.1"
                     /translation="MKTIKFYVVIAALAFLTASCVENSEKYKAAIASRDSLAFEKQAS
                     DSNYIRTLTILNDIETGFSEITQNEKQMKINLKGVEGTTNKKELIAAQMNAIKESMEQ
                     NKAKIAELQKLAAKKGKANSMLASTIKRLQTELEEKTVQIQSLQAELEQKNIKITELT
                     TTVNDQSKNIAEQQSAMEQQKSTIKGQDTDLNTVWYCIATAKKLKEEKIVSTAGLFQS
                     KKVLDNEFDKDAFTQVDLRNVSSIPTNSKKVKILSLHPKNSYNLVTGADKYITIEITN
                     PSKFWSISKYLVVQI"
     gene            2113..3423
                     /locus_tag="VI413_06845"
     CDS             2113..3423
                     /locus_tag="VI413_06845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008997866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY6914375.1"
                     /translation="MKQMILIIEDDTTFGTMLQRWCNRNGFDAKLCSTISSAQDELTD
                     KKVHLVLTDLRLPDGDGIMLLQWIREQKMDIPVIVMTSYAEIQSAVAAMKLGAEDFLE
                     KPMNPAILKNKIEQALSIKPTAAKPNKRVASNMILGKSAEAKLMYDHILRVAPTRMSV
                     LIIGESGTGKEYAARMIHEKSPRSNKPFIAVDCGSLSRELAPSELFGHLKGSFTSAVE
                     DKTGIFVQADQGTVFLDEVGNLSYDVQVQLLRALQEQKVRPVGSAKDIKVDVRILAAT
                     NENLETAIAEGRFREDLYHRLNEFSVFVPPIRDRKGDIEIFANEFLRQANDELEKQIK
                     GFSTEALSLLEKHHWGGNLRELRNMVRRMVLFASKDFITPEDIPAFVTAPSLEDLALH
                     SENECEQIKNALHKARGNKTVAAQLLKIDRKTLYNKMHLYDIKL"
     gene            complement(3413..>4164)
                     /locus_tag="VI413_06850"
     CDS             complement(3413..>4164)
                     /locus_tag="VI413_06850"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6914376.1"
                     /translation="EPFSRVESNNALADGTGLGMYVVKGLVDLLGGNILVESEVGSGT
                     KVGVAIPCIKAENRIKRGAKKIAVYDDDPMVIEMVSGMLVRLGHEVVEHDYDMILTDM
                     EMGEVSGLDILATSGNVPVIVMTGHSDFTTEKAIQLGFDAFLAKPLTFDALREIFGEG
                     ENNANDFLGEDNDEILEIFRTSTAENYSLLRQALIDSDFNKAQAICHKMLPMFVLLGY
                     PVDELRRMDAQRGNAYEGWQIDMETILSIKV"
BASE COUNT         1423 a          848 c          767 g         1126 t
ORIGIN      
        1 tattcgctca aaatatagtg cagggtgcaa gtgtttctat atagaaactt gcaccttgca
       61 caatgtctaa atatttagta atatgatact tgtgtatgtc aaaataatta tgtacttttg
      121 aacctgtaag ttaagcagac aagcgtaagt cattgacagt caaaaagtga tctttttagt
      181 gcatttccta attcgtaccc cttaagggtg tattgaagga taaataactg aatttcaata
      241 gagtaatatg ggaggttcat aaacctctct ctccgccagt aacattaaag agacctattt
      301 gggtctcttt ttttatgccc aaatgtaaac atccccaccc tacatttctt tattgacatg
      361 agttgattat tgtctacctg aattcttcaa tcttgaatca aataggttca caaaatgact
      421 ctatactcgt taataaaaac catctcaacc ttttccccat aactttccac aactttccac
      481 aactttccac actaaacaaa aaccataaat aaaacgttat caatacatta attatactgg
      541 catgagtatt ggtcattagc tcacaaatag cttaaaacca ttaaatacaa aacatgcaac
      601 cattaaaatt gatagttatt ggattactga tatcttttgc agctactgcg gaagcacaag
      661 tttcaatcag ggtaaatatt ggaatgcctc caccatgggg gcctcaggta gaagacgatg
      721 tgcggtacta ttaccttccg gatgtggatg cttattacga tataaataca tctttgttta
      781 tatgttttta taatggacac tgggttcaca gacgtcatct cccggataga tatcaaaact
      841 atgatttgta tcacggacgc aaaatagtgg tgaataacta tcgcggaaat actccatatt
      901 ctcattgcaa ctatcacaaa aacagagact atagaatgat taaacgtagt gaaagatcac
      961 accacaggga ctatgaagat cactatcgga gaagtgataa aaaccacgga gaaggaaata
     1021 tgaaatttgc acgggggaaa gggaaaggta gaaaagatta atttgctaca ttaaagtcac
     1081 catattaatt attagacaag cattccattt tttaactcat atcataaact attaaattaa
     1141 aaaaaatgaa aacaatcaaa ttttacgtag ttattgcagc actcgctttt ttaacggcat
     1201 cttgtgttga aaattcagaa aaatacaaag cagccattgc ttcacgtgat tcactggcat
     1261 ttgaaaaaca agcttcggat tcaaattata ttcgaactct taccattttg aatgatattg
     1321 aaaccggatt ttctgagata actcaaaatg agaagcaaat gaagattaac ctcaaaggag
     1381 tagaaggcac aaccaataag aaagaactta tagcagctca aatgaatgca ataaaagaga
     1441 gcatggagca aaacaaagca aaaattgcag aacttcagaa gttggcagct aaaaaaggaa
     1501 aagcaaatag tatgttggcc tcaactatca aacgcctgca aactgaacta gaagaaaaaa
     1561 ctgtccagat tcaatcctta caggctgaac tcgaacagaa aaatattaaa atcactgaac
     1621 ttacgactac tgtaaatgac cagagcaaaa atattgctga acagcaaagt gcaatggaac
     1681 agcaaaagtc tacaataaaa ggccaggata cggatctgaa tacagtatgg tactgtatag
     1741 ccacagctaa aaagctcaaa gaagaaaaga tcgtttcaac tgccggactc tttcaaagta
     1801 aaaaagtgct ggataatgaa ttcgataaag atgcctttac tcaagttgac ttaagaaatg
     1861 tttcgtcaat accgaccaat agcaaaaagg ttaaaattct ctctttacac cctaaaaaca
     1921 gctataattt ggttacaggc gccgacaaat atattactat cgaaattacc aatccttcaa
     1981 aattctggag tatatcaaaa tacttagttg tacaaatata attttttaat aaaaaatagt
     2041 atttagcgag ctcaatagaa cctgtttccc gtagcgaaaa tatcaattaa attgattatt
     2101 tttgctttca atatgaaaca gatgattttg ataattgagg atgacaccac ctttggaact
     2161 atgttgcaaa ggtggtgtaa tcgtaatgga tttgacgcaa aattatgctc aactatttcg
     2221 tcggcacaag atgaactaac cgataaaaaa gttcatttgg tgctgacgga tttgcgttta
     2281 cccgacggtg acggaatcat gctgcttcaa tggattcggg aacagaaaat ggacatacct
     2341 gtcatcgtaa tgacaagtta tgcagagatc caaagtgcag tggcagcgat gaaacttggt
     2401 gctgaagatt ttctggagaa accaatgaat ccagccatct tgaaaaataa aattgaacaa
     2461 gccctttcaa taaaacctac cgctgcaaaa ccgaacaaac gtgttgccag caacatgata
     2521 ttgggaaaaa gtgcagaagc taaattaatg tacgaccaca ttctgcgtgt tgctcccacc
     2581 cgcatgtcgg tgctgataat tggcgaaagc ggcacaggca aagaatatgc agcgcgaatg
     2641 attcacgaaa aaagcccgcg tagcaacaaa ccatttattg cagtggattg tggaagcctg
     2701 tcgcgggaac tggctccaag tgagctcttc gggcacctta agggttcatt tacttcagcc
     2761 gtagaagaca aaacgggtat atttgtgcag gcagaccagg gcacagtatt tctggatgaa
     2821 gtgggtaatc tttcgtatga cgtgcaggta caacttctgc gtgctttgca ggaacagaaa
     2881 gtgcgtccgg taggatcggc caaagacata aaagttgatg tacgtatact tgctgcaacg
     2941 aatgagaatc tggaaacagc cattgccgaa ggacgttttc gggaagattt gtatcatcgc
     3001 ctaaatgagt tttctgtttt tgttccgccg atccgcgatc gcaagggaga tatagaaatt
     3061 tttgcaaacg agtttttgcg ccaggccaat gatgaactgg aaaaacaaat taaggggttc
     3121 tcaacagagg ccttatcact tctggaaaaa caccactggg gcggaaacct gcgcgaattg
     3181 cgtaacatgg tgagaagaat ggtactcttt gcttcgaaag actttatcac tccggaggat
     3241 attccagctt ttgttacagc accttccctc gaagatctgg cactacattc ggaaaatgaa
     3301 tgcgaacaaa taaaaaatgc actacacaaa gctcgtggga ataaaaccgt tgctgcccaa
     3361 cttttgaaga tagaccgtaa aacgctttac aataaaatgc acctttacga tatcaaactt
     3421 taatcgacaa aatagtttcc atgtcaatct gccagccttc gtaagcattg ccacgttgag
     3481 cgtccatccg ccggagttca tcaaccggat aaccaagcaa gacaaacata ggtagcattt
     3541 tatggcaaat ggcctgtgcc ttgttgaaat cggagtcaat aagcgcctgt cttagcaatg
     3601 aataattttc ggcagtcgaa gtacgaaaga tttccagaat ttcatcattg tcttctccca
     3661 aaaaatcatt tgcgttattt tcgccttcac cgaaaatctc acgcaatgca tcaaatgtaa
     3721 gcggcttcgc caaaaaagca tcgaacccaa gttgaatcgc tttttcagtc gtaaaatcac
     3781 tatgcccagt cattacaatt acaggaacat ttccggatgt cgccaaaata tccagtcccg
     3841 acacttcacc catttccatg tcggttagta tcatatcata atcatgttca acaacttcgt
     3901 gccctaaccg cacaagcatg ccactcacca tttctattac cataggatca tcatcataca
     3961 ctgcaatctt tttcgcaccc cgtttaatcc tgttctctgc ctttatacaa ggtatagcca
     4021 caccaacttt tgtaccacta ccgacttcgg actcaacaag gatattcccg ccaagtaaat
     4081 caaccaaccc ttttaccaca tacatcccta atccggtgcc gtcggccaaa gcattattac
     4141 tttcaactct tgagaacggt tcgt
//
LOCUS       DATDNM010000406         6260 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1759261, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000406 DATDNM010000000
VERSION     DATDNM010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6260
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1759261"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VI413_06855"
     CDS             complement(<1..252)
                     /locus_tag="VI413_06855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009038686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEY6914377.1"
                     /translation="MTRIGILSDTHGLLDERVLEHFANCDEIWHCGDWGSLEVVTKLS
                     AFKPLRGVWGNIDGYEIRSMFPQHNRFMCEGVKVWLTHIG"
     gene            491..1357
                     /locus_tag="VI413_06860"
     CDS             491..1357
                     /locus_tag="VI413_06860"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEY6914378.1"
                     /translation="MKKKTNKLAPFIQKMRFKYRVSILNENTLEESWHLRLSRISVLL
                     FGSTLAVLTFIILTILIFTTPISRYLPGYGDSGNRSKIIQESMRADSMVQQINLQQGY
                     MGIIKGIITGNIKPDSIASLDSAEVKEKAHILLEKTQSEKEFTAKFEEEEKYNLASID
                     SKPNENMYVFFRPTRGVISSSFNLSEQQYGIYLITSPNESVLSVLAGTVVYAAFTFDY
                     GWVIQVQHENNYLSIYKNNTRLLKKIGDEVKAGESIAITGDASGKKAGSQFYFELWKQ
                     GKPVDPEEVIIF"
     gene            1409..2572
                     /locus_tag="VI413_06865"
     CDS             1409..2572
                     /locus_tag="VI413_06865"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEY6914379.1"
                     /translation="METNHKKQIAILGSTGSIGTQALEVIAENDSLFEVYALTANNNV
                     DLLIKQSRRYKPEMVAIGNEDHYQKLKSALADLPIKVFAGDDSIAQVAEMQPIDMVLT
                     AMVGYSGLKPTISAIKAGKKIALANKETLVVAGEMVCDLAASFNSAILPVDSEHSAIF
                     QCLAGEGNNPIEKLILTASGGPFRTKSIHELEHVTSAQALKHPNWDMGAKITIDSASL
                     MNKGFEIIEAKWLFGVTPDQIQVVVHPQSIIHSMVQFTDGSIKAQLGMPDMKLPIQYA
                     FTYPDRLKTNFPRFDFDVCDQFTFEKPDLEKFRNLAFAYYAMDKGGNMPCILNAANEI
                     VVAEFLKDKIGFLQMSDIIEDVMAKADFIVKPTYDDYVKTDAAVRSLTKELIK"
     gene            2586..3659
                     /locus_tag="VI413_06870"
     CDS             2586..3659
                     /locus_tag="VI413_06870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0032775 - DNA methylation on adenine
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEY6914380.1"
                     /translation="MEIPKTEGIKYAGSKLRLLPFIFEMVGSLEGIETVLDGFSGSTR
                     VSQVFAKLGYSTTSNDISAWSEVFATCYLVSSQSNVFYQEIIDHLNNLQGIDGWFSEN
                     YGGAEKETKKPFQIKNTRKLDAIREEIDRLNLAFEDKCVLLTSLIYALDKVDNTLGHY
                     VAYLSEWSIRSHKDLKLKLPQRFTSTGNNRVIRDDVFNTVANNGFDLVYLDPPYGSNN
                     EKMPPSRVRYAAYYHLWTTIIQNDKPVLFGKANRREDSRDDCCGSIFEEFRKNETGNF
                     LAMEALRKLISETKTRYLLLSYSSGGRATKQQLLNIMSDCGKLREIKLIDHRKNVMSN
                     MRSTSEWINSDGKHNEYLFLMEK"
     gene            3694..5181
                     /gene="rseP"
                     /locus_tag="VI413_06875"
     CDS             3694..5181
                     /gene="rseP"
                     /locus_tag="VI413_06875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEY6914381.1"
                     /translation="METFLIRAAQLILSLSILVVLHEFGHFAFARLFKVRVEKFYMFF
                     NPNFSLIRAKKINGKWNYKFFAANVPANERPKLNANGSEIVDSKGKTIMEQIPASELP
                     EDDWRKYPENTEWGIGWLPLGGYCSISGMVDETKDTTQLAAEPQPWEYRSRSVWQRLP
                     IIIGGVFVNFVLAIVIYSAVLFTWGKEYMPMKSAKYGLQFSPTLIQNGFKDGDKIISI
                     DGLPVEKQSDIVEKILIDGKQKITVLRDTQQVEIDLPEDLSQKILAAEELNMISVRVP
                     FVIEEVSSGTPASKANLMAGDSLIGINGKHIFIFQDIAAELDASRSTTVSLDYVRNGK
                     VMNSPVQLDEKGKLGVAARFAFADMPTKKIKYTLLESIPAGIQYSWEILTGYVKQFKL
                     VFTKEGSKQIGGFGSIGKMFPKAWDWQVFWSMTALLSVILAFMNFLPIPALDGGYVLF
                     LIYEMITGKKPNDKFLEYAQTVGFFLLMGLLIYANGNDLFKALFK"
     gene            5191..5544
                     /locus_tag="VI413_06880"
     CDS             5191..5544
                     /locus_tag="VI413_06880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009134030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HEY6914382.1"
                     /translation="MKPIAICYPKCGTCQKAEKWMKFNGVEYTYRPIKEENPTKEELK
                     LWIDKSGLPVTKFFNTSGLLYKEHNMKDKVKVLPEDELIDILASDGMMVKRPILLAGE
                     KVLVGFKEEEWKTIL"
     gene            complement(5553..>6260)
                     /locus_tag="VI413_06885"
     CDS             complement(5553..>6260)
                     /locus_tag="VI413_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HEY6914383.1"
                     /translation="QGEPLLNKQLSEFIHYAHDAKIYTSTSTNGQLLNKKNAKDIVLS
                     GLDKLIVSVDGSTQETYESYRVGGKLQKTLDGIKELIYWKTKLKSVTPLLEIQFIVLK
                     TNEQQLAEMKKLAKSLHADRLTFKTAQLYDFENGNIRLTSIDKYARYKQMPDGKYVLK
                     GSRPNRCWRLWSGAVINAHGEILPCCFDKASEFSFGNINEKSFTENWHNKKASGFRES
                     ILQNRKQYEMCRNCTSK"
BASE COUNT         1983 a         1203 c         1263 g         1811 t
ORIGIN      
        1 gccaatatgg gtgagccaga ctttcactcc ttcgcacata aaccggttat gttgcggaaa
       61 cattgaacga atctcgtaac catcgatatt tccccaaaca ccacgcagcg gcttaaacgc
      121 acttagtttg gttaccactt ccaaagaccc ccagtcgcca caatgccaaa tttcatcaca
      181 gttggcaaaa tgttccagta cacgttcatc tagtaagcca tgagtatcag aaagtattcc
      241 tattcgggtc atcttgttgt tttttctaaa ttaatatcag gacaaaagta aaaaaaatag
      301 cgacacaatg ttcttgtatc gggctgtatt taaaatttca gccaaacctg tttagttaac
      361 aatatgtaag tcgttcgctt ttgtgcaaat aaacataaac aacggctctg ttattggcaa
      421 aactcatttt gtttatatcc tgaatttcgc tacttttgtc ctcggttcag ttgtcaagac
      481 agcacttgta atgaaaaaga aaacaaataa gcttgctccg ttcattcaga aaatgcgatt
      541 caaatatcgc gtttccattc tcaacgaaaa cacattggaa gaatcgtggc atcttcgttt
      601 atcacgtatc agcgtgttat tgtttggctc tacgctggct gttctgactt ttatcatcct
      661 tacaattctg atcttcacta ctcccataag ccgctacctg cctggttatg gggattccgg
      721 caaccgttct aaaattattc aggaatctat gcgcgccgac tcaatggtcc aacaaatcaa
      781 ccttcaacaa ggttatatgg gaataataaa ggggattatt acaggaaata tcaaaccaga
      841 ttcaatagca tccctggatt ctgccgaagt gaaggaaaaa gcacacattt tgttagaaaa
      901 gactcaaagc gagaaggaat ttacagctaa atttgaggaa gaagagaagt ataatctggc
      961 aagcatcgac agcaaaccga atgagaatat gtacgttttc tttcgcccta cacgtggagt
     1021 aatttcatca tcattcaatt tatccgagca acaatacgga atttatttaa ttacttcgcc
     1081 gaacgaaagt gtgttgagcg tacttgccgg gacagtcgtt tatgcagcat ttacgtttga
     1141 ttacggctgg gtaattcagg tgcaacatga gaataactat ctttcaatct ataaaaacaa
     1201 tacccgtttg ttgaaaaaaa taggagatga agtaaaagcg ggtgaaagca ttgccattac
     1261 cggcgatgcg tcaggcaaaa aagcgggaag ccagttttat tttgaattat ggaaacaggg
     1321 aaagcctgtt gaccccgaag aagttattat attttgatga gacaggttgt caacctgtcc
     1381 gaaaacaaca cgcagattca gaacaagaat ggaaacaaat cataaaaaac aaatagccat
     1441 tttaggctcc accggttcta tcggaacgca ggcattagaa gtcattgctg agaacgattc
     1501 gctgttcgaa gtttatgcac tcactgccaa caacaacgtg gatttattga ttaaacaatc
     1561 cagaagatac aaaccagaaa tggttgcaat cgggaatgaa gaccactatc aaaagctcaa
     1621 atccgcattg gccgatctac ctataaaagt ttttgcaggc gacgattcta ttgcccaggt
     1681 ggctgagatg caaccaattg acatggttct gacagctatg gtaggttact ccggtttaaa
     1741 accaacaatc agcgctatta aagccggaaa gaaaattgcg ttggccaata aggaaacact
     1801 tgttgttgca ggcgaaatgg tttgcgatct ggcggccagt ttcaattcag ccattctccc
     1861 ggtcgattct gaacattccg ctatattcca atgtctggcc ggtgaaggaa ataatcctat
     1921 cgaaaaattg attttgaccg cttcgggcgg accgttccgg acaaaatcga tacacgaact
     1981 ggaacatgta acaagcgctc aagccctgaa acacccaaac tgggatatgg gtgccaaaat
     2041 taccatcgat tcagccagtt taatgaataa aggatttgaa attattgaag caaaatggct
     2101 ttttggtgtt acacccgatc aaattcaggt agtagtccat ccgcaatcca ttattcattc
     2161 tatggttcag tttaccgatg gttctataaa agcgcaactt ggcatgcccg acatgaaatt
     2221 gcctatccag tacgctttta cataccctga ccgtttgaaa acaaatttcc ctcgttttga
     2281 ctttgacgtt tgcgatcaat ttacgtttga aaaaccggat ttggagaaat ttcgaaacct
     2341 ggcttttgcc tattatgcta tggataaagg tggaaatatg ccttgcatcc tgaatgcagc
     2401 taacgaaatt gttgtggctg aattcctgaa agacaaaatc ggttttttgc aaatgagcga
     2461 tataattgaa gatgtaatgg cgaaagcaga ttttattgtc aagccaactt atgatgatta
     2521 cgtaaaaact gatgcagcag tgcgttcact taccaaagag ttgattaagt agcattattt
     2581 aaaacatgga aattcccaaa accgaaggta taaaatatgc gggatcaaag cttcggcttt
     2641 tgccttttat ttttgaaatg gtcgggagtt tagagggaat agaaacagtt ttggacggtt
     2701 ttagcggttc tacaagggtt tcgcaggtat ttgccaaatt gggctattca accacttcga
     2761 atgacatttc ggcttggtcg gaagtatttg caacctgcta tttagtttcc agccaatcta
     2821 atgtttttta tcaggaaatc attgatcatc taaataattt acaaggaatt gacggttggt
     2881 tttcagaaaa ttacggtgga gcagagaagg aaacaaaaaa accgtttcag ataaaaaaca
     2941 cacgtaaact ggatgcaatt cgcgaagaaa ttgaccggtt gaatttagcg tttgaagata
     3001 aatgcgtatt actcaccagt ttgatttatg ctttagacaa agtggataac acgcttgggc
     3061 actacgtggc ttacttgtcg gaatggtcaa tacgatccca taaggatttg aagttaaaat
     3121 tgccacaacg atttacgtca acgggcaaca atagagttat tcgcgacgat gtttttaata
     3181 cagttgcaaa caacgggttc gatttagttt atctcgatcc gccatacggc tcaaataatg
     3241 agaaaatgcc gccgagccgg gttcgttacg ctgcttatta tcatttatgg acaacgataa
     3301 ttcaaaatga taaaccagtg ctttttggta aagcaaaccg gcgggaagat agtcgcgacg
     3361 attgctgcgg ctcgattttt gaggaattcc gaaaaaatga aacgggcaac tttctggcaa
     3421 tggaagcttt acgaaaactg atatccgaaa caaaaacacg ctatttgttg ttgtcgtaca
     3481 gttcaggtgg aagagccacc aagcaacaac tactgaacat aatgtccgat tgcgggaaat
     3541 tacgagaaat aaaactgatt gaccatagaa agaacgtaat gagcaatatg cgctcaacaa
     3601 gcgagtggat taacagtgac ggcaaacaca atgaatatct ttttttaatg gaaaaataaa
     3661 taattacaag ataaaatagt tacacaattt tatatggaaa catttcttat ccgagctgca
     3721 cagctcattc tcagtctttc aattttagtg gttctgcatg aattcgggca tttcgcgttt
     3781 gcacggttgt tcaaagttcg tgtcgaaaaa ttctatatgt ttttcaatcc gaatttttca
     3841 ttaattcgcg ccaaaaagat taacggaaaa tggaattaca aattctttgc cgcaaacgtt
     3901 cctgccaacg aacgaccaaa actgaacgcc aacggttctg aaatcgtcga ctcaaaaggc
     3961 aaaacaataa tggaacaaat tcctgcttcc gaattacctg aagatgattg gcgcaaatat
     4021 cccgaaaaca ctgaatgggg aattggttgg ttgccacttg gcggctattg ttctatttca
     4081 ggaatggttg atgagacaaa agacacaact caattagctg cagaaccaca accatgggaa
     4141 taccgctcac ggtctgtgtg gcaacgtttg ccaataatta ttggaggtgt attcgtcaac
     4201 tttgtattag caatagtaat ttattccgct gtattattta catggggaaa agaatacatg
     4261 cccatgaaaa gtgccaaata tggcttgcaa ttttcgccaa cattgattca gaatggattt
     4321 aaagacggag ataaaattat ctctatcgat ggattgcctg ttgaaaaaca aagcgatata
     4381 gttgaaaaaa tacttatcga cgggaaacag aaaattacgg tattgcgcga cacacagcag
     4441 gttgaaattg atcttccgga agatttatcg caaaaaatac tggcagccga agaacttaat
     4501 atgatttcag ttcgcgtgcc gtttgttatt gaagaagttt catctggaac accggcttct
     4561 aaagcaaatc taatggctgg cgatagtttg attgggataa acggaaaaca tattttcatt
     4621 ttccaggata ttgctgcaga attagacgct tcgcgcagca caacagtatc gctggattat
     4681 gttcgtaatg gcaaagtaat gaactcacca gtccaactgg atgagaaggg aaaactggga
     4741 gttgctgctc gatttgcatt tgcagacatg ccaacaaaaa aaattaaata cactttactt
     4801 gaatcaattc cggctggcat tcaatacagc tgggaaattc tgactggcta cgtaaaacaa
     4861 ttcaagttgg tattcaccaa agagggttcc aaacaaattg gcggatttgg atcaattgga
     4921 aaaatgtttc ctaaggcatg ggattggcag gttttctggt caatgaccgc actgctttcg
     4981 gttattttgg cgtttatgaa cttcctaccg attcctgcgc tggacggtgg atatgttttg
     5041 tttttaattt acgaaatgat taccggcaaa aagccaaatg acaaattcct ggagtacgcc
     5101 caaaccgttg gattctttct tctaatgggc ttgctaattt acgctaatgg aaacgatttg
     5161 tttaaggcat tatttaaata acacaccaat atgaaaccaa ttgcaatatg ttatcctaaa
     5221 tgtggtactt gccaaaaagc ggaaaaatgg atgaagttca atggtgttga atacacttat
     5281 cgccctataa aagaagaaaa tccaacaaaa gaagagctca aattatggat cgataaaagc
     5341 ggacttcctg ttactaaatt tttcaataca agtggacttc tttacaaaga gcacaatatg
     5401 aaagacaaag taaaagtact tcccgaagat gagttgattg atattctggc ttcggacgga
     5461 atgatggtaa aacgccctat tctgcttgca ggagaaaaag ttctggtagg tttcaaggaa
     5521 gaagaatgga aaaccattct ctaaactaac aactatttgc tggtacaatt ccggcacatc
     5581 tcatattgct tccggttttg gagaattgat tctctgaaac cggaagcttt tttattatgc
     5641 cagttctctg taaatgattt ttcattgata ttgccaaatg agaattctga agctttatca
     5701 aagcagcaag gcaaaatttc tccgtgtgcg tttatcacag ctccgctcca aagccgccaa
     5761 caacggttcg gtcgactacc ttttaacaca tactttccat cgggcatttg tttgtaccgg
     5821 gcatatttat ctatagaagt gagtcttata tttccatttt caaaatcata aagctgtgca
     5881 gttttgaagg ttagcctatc agcgtgtaaa ctctttgcaa gttttttcat ttcagcaagt
     5941 tgttgttcat ttgttttaag cacaataaat tgaatttcca acaagggtgt cacagatttc
     6001 aatttggtct tccaataaat aagctctttt attccatcca gcgttttttg gagtttccct
     6061 cccacccgat aactttcata agtttcctgt gtacttccat ctaccgagac aattaactta
     6121 tccaacccgg aaagcacaat atctttggca ttctttttgt tgagcaattg cccgtttgtt
     6181 gaagtagatg tatagatttt tgcatcatgc gcatagtgta taaattcaga caattgttta
     6241 tttagcaatg gttctccctg
//
LOCUS       DATDNM010000407         2382 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1118550, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000407 DATDNM010000000
VERSION     DATDNM010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2382
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1118550"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..281
                     /locus_tag="VI413_06890"
     CDS             <1..281
                     /locus_tag="VI413_06890"
                     /inference="COORDINATES: protein motif:HMM:NF025425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4251 domain-containing protein"
                     /protein_id="HEY6914384.1"
                     /translation="KNDSVFAFLPYFGVAHVAPMNPSEGGIKFAEPMINYTVTANKKS
                     TGWDIRFRVKSKESVYDIGMDIFNNGSATITVNSYERDVITFNGEIKR"
     gene            322..906
                     /locus_tag="VI413_06895"
     CDS             322..906
                     /locus_tag="VI413_06895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914385.1"
                     /translation="MLHNFKSSLHHERDQSAMADKFYRDVLKVSEILRFNSDSEADME
                     MQRQDVDVMLTLNEITYRVSEKFRDKEYGDLYVEVFSKYPKKPGWLHTGSPNAILYFT
                     PESVFWITHKSLSAFCLSTLFPLIPKKWYGELFQSHKTIISKRILLNKKLIKINMIQA
                     HNRDGASWETIGISAPFSFFEENGVKIKRIDNKY"
     gene            1253..>2382
                     /locus_tag="VI413_06900"
     CDS             1253..>2382
                     /locus_tag="VI413_06900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase"
                     /protein_id="HEY6914386.1"
                     /translation="MKEIKFSLVYRDMWQASGKYVPRKDQLAKIAPVLIEMGCFARIE
                     TNGGASEQVNLLYGENPNDAVRTFTKPFNEAGIQTHMLDRGLNGLRMNPVPADVRELM
                     YKVKKAQGVDITRIFCGLNDVTNIIPSIHYAKAAGMIAQATMCITYSEIHTAEYYINM
                     SEQLIEAGADEICLKDMAGIGRPEMLGKIVKAIKTAHPHIVIQYHGHSGPGFSVASML
                     EVAKAGVDYLDVAMEPLSWGMVHPDVITIQAMLKDAGFKVPEINMNAYMEARRLTQSF
                     IDDFLGYFIDERNKFMTSLLVGCGLPGGMMGSLMADLKGVHSGINSYLKGVNKKELST
                     DELLVMLFDEVKYIWPKLGNPPLVTPFSKYVKNIALMNVMFLV"
BASE COUNT          736 a          379 c          494 g          773 t
ORIGIN      
        1 ttaagaatga ttctgtattt gcttttctac cttactttgg tgttgctcat gtggccccaa
       61 tgaatccaag tgaaggtgga attaaatttg cagaacccat gatcaattat accgttacag
      121 cgaataaaaa atcaacaggc tgggatatcc ggtttcgtgt gaaatcaaag gaatctgtat
      181 atgatattgg aatggatatt tttaataatg gaagtgcaac gattaccgtt aactcttatg
      241 aacgggatgt gataacgttt aacggagaaa taaagagata ggtttaaata cacaaagcac
      301 attttaaatt gtgaaaaaat tatgcttcat aacttcaagt ccagcctgca tcatgaaagg
      361 gaccaatcgg ctatggctga caagttttat cgtgatgtgt tgaaggtttc agagattttg
      421 aggtttaatt ccgattcaga agcagatatg gaaatgcagc ggcaggatgt tgatgtaatg
      481 ctgactttga atgaaataac ttaccgtgtt tccgaaaaat tcagggataa agaatatgga
      541 gatttgtatg tagaagtctt tagtaaatat cctaaaaagc caggttggtt gcataccggc
      601 tcacccaatg ctattttata ctttactcct gaatctgtat tctggattac tcataaatcg
      661 ctttctgctt tttgcctgtc aactttgttt ccacttattc ccaaaaaatg gtatggagaa
      721 ctttttcaat cgcataaaac gattatttcc aaacgaattt tgctgaataa gaaactgatt
      781 aaaatcaata tgattcaagc tcacaatagg gatggggctt cgtgggaaac cattggaatt
      841 agtgctccgt tcagtttttt tgaagaaaac ggggtgaaaa taaaacgaat cgacaacaag
      901 tattgattcc aattactctg atttatattc ttgccgaact tttaatctga aacaattcaa
      961 ccctgtttta ttcaataatt aatctatttt acaccttcat ttttaatcca taattttatt
     1021 cttagtaata ctttcaattt gatattttgg ttttgaaaat atgcaaaata attaaagaat
     1081 tatttcttta atttgttggt caattgaaaa aaaagtcgga tatttatact cgattttaaa
     1141 aaacctttca ggcttgttat ttgtttgatt aactggatgt tgaatatttg aaagtagttg
     1201 tgttttagtg gttattttat aatagaatca aaaaataaat tttacataca aaatgaaaga
     1261 aattaaattc agtcttgttt accgcgatat gtggcaagcg tcgggcaaat atgtgccccg
     1321 taaagaccaa ttggcaaaaa ttgctcctgt acttattgag atgggatgtt ttgcacgtat
     1381 tgaaaccaat ggtggagctt ccgaacaagt gaacttgctt tacggagaaa atccaaatga
     1441 tgctgtacgt acgtttacaa aaccttttaa cgaagctggt attcaaacgc acatgcttga
     1501 ccgtggtttg aacggtttgc gcatgaatcc agttcctgct gatgtgcgtg agttgatgta
     1561 taaggtgaag aaagcgcagg gagttgatat tacccgtatt ttctgtggct tgaatgatgt
     1621 aactaacatt attccatcca ttcattatgc caaggcggca ggtatgattg ctcaggctac
     1681 catgtgtatt acatattctg aaattcatac agcagagtat tatatcaata tgtctgagca
     1741 acttattgaa gccggtgcgg atgaaatatg tctaaaagat atggctggta tcggtcgtcc
     1801 tgaaatgttg ggaaaaatag taaaagctat caaaacagct catccacaca ttgtaattca
     1861 atatcatggt cactcaggac ccggtttttc tgttgcgtca atgctggaag tggctaaagc
     1921 gggagttgat tatctggacg ttgccatgga accactttcg tggggtatgg ttcacccgga
     1981 tgtgattacc attcaggcta tgttgaaaga tgcaggtttc aaagttcctg aaatcaatat
     2041 gaatgcttat atggaagctc gtcgtctgac acagagtttt attgatgact tcttggggta
     2101 ttttatcgat gaacgtaata aattcatgac ttcgttgctc gtaggttgcg gacttccggg
     2161 tggtatgatg gggtcgttga tggccgacct gaaaggcgtt cacagcggta tcaattcgta
     2221 tttgaaaggc gtaaacaaaa aagaactaag caccgacgaa ttgttggtta tgttgttcga
     2281 cgaagtaaaa tacatttggc ctaagttggg aaatccaccg ttggtaactc cattcagtaa
     2341 atacgtgaaa aatatcgcat tgatgaacgt tatgttcctt gt
//
LOCUS       DATDNM010000408         4699 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_799025, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000408 DATDNM010000000
VERSION     DATDNM010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4699
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_799025"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..783
                     /locus_tag="VI413_06905"
     CDS             <1..783
                     /locus_tag="VI413_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016662822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEY6914387.1"
                     /translation="SGETADTLAAVDLAKSHGAFIFGICNVVGSSIPRNTHSGCYTHA
                     GPEIGVASTKAFTAQVTVLTMLALLIGKEKGTLDNEQYLKTVAELGRIPEKISHLLKQ
                     DTIIAEFAKTFTYAQNFIYLGRGYNFPVALEGALKLKEISYIHAEGYPAAEMKHGPIA
                     LISQEMPVVVIAPSAGMYEKVVSNIQEIKARKGKIISIVTEGDVVVRNLSDYTISIPD
                     TEECLVPLLAAIPLQLLAYHIAVVKGCDVDQPRNLAKSVTVE"
     gene            926..2737
                     /locus_tag="VI413_06910"
     CDS             926..2737
                     /locus_tag="VI413_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEY6914388.1"
                     /translation="MCGIAMVRLLKPLDYYQEKYGTWQYGLQKMYLLMEKQHNRGQEG
                     AGLATVKLDMPAGEEYIWRERVEGKNAIQEIFATINKKTGSVSPEVYNDVERSKLELP
                     FAGELYLGHLRYSTTGRSGLSYVHPFLRRHNWKNRTMVLAGNFNLTNVDELFEHLTLK
                     GQHPRDKGDTFLMLESLGFKLDQEVQKEYDKIKQRYTNDLVITQKIEENLDIASFIRK
                     SEKNWDGGYVICGMLGHGDSFVFRDSKGIRPAFYYIDDEIVVTASERPVIQTAMNVKE
                     ENIHELQPGEAMIIKKNGTIKFETIRPAAAELSKCSFERIYFSRGSDIDIYKERKQLG
                     ESLAQPILKAIDNDVENTVFSFIPNTAEVAFYGMKDGIKAATDVPIRVEKVLIKDIKL
                     RTFISTNDERNDLATHVYDVTYGSIRRGKVDNLVAIDDSIVRGTTLKQSILKILNRLE
                     PKKIVIVSSSPQVRFPDYYGIDMARMNEFCAFRAAIALLKESGRQHIIDEVYRKSKAQ
                     ENLPKEEVINYVTEIYEPFTQDEVSVKIAQMLTPAEVDCPVELVYQTIEGLHKACPNH
                     AGDWYFSGNYPTPGGNRLVNKAFLDYYEDKDGLTYGC"
     gene            2771..3106
                     /locus_tag="VI413_06915"
     CDS             2771..3106
                     /locus_tag="VI413_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY6914389.1"
                     /translation="MQSENFIFNSEANWETVGEGMRRQILGYDDQIMLVKIEFKAGGI
                     GYVHQHVHRQCSYVVSGVFEFQVGKETKIVKAGDGLYVETNVLHGVKCLEEGVLIDTF
                     SPVREDFLT"
     gene            complement(3293..>4699)
                     /locus_tag="VI413_06920"
     CDS             complement(3293..>4699)
                     /locus_tag="VI413_06920"
                     /EC_number="5.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007486519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HEY6914390.1"
                     /translation="NIFSANGIKVYLFEDLRPTPEASFAIRHLGCQSGIILTASHNPK
                     EYNGYKAYWNDGGQMILPHDENVITEVNKIKSVDDIKFNGNPDLIQIIGEEIDKPYID
                     AIKTISLSPDAIKRNNDLKIVYTPIHGTGVMLVPRALKAFGFTNIIPVPEQNVVSGDF
                     PTVISPNPEEPAALDMAVKKAIETDADIVMASDPDADRLGIAVKNDKGEWILVNGNQT
                     ALIFIYYIIRRWNELGKVTGKEYIVKTIVTTEIIKQIAERNGVEMFDCFTGFKWIAAV
                     IRENEGIKQYIGGGEESYGFLAEEFARDKDAVSACTLMAEIAAWAKDNGKTLFELLQD
                     IYVEYGFGKEKGISVVRKGKSGAEEIAQMMSDFRNNPPKEIAGSKVALIKDYETLKAT
                     NVATGEQSTLDFPTTSNVLQYFTEDGTKISVRPSGTEPKIKFYIEVRGEMKSRGEYDA
                     ADAAANQKVEAVRASLGV"
BASE COUNT         1408 a          807 c          988 g         1496 t
ORIGIN      
        1 tcgggtgaaa cagctgatac acttgctgct gttgatcttg caaaatcaca tggagctttt
       61 attttcggta tctgtaatgt ggtgggttca tctattcctc gtaatacaca ctccggttgt
      121 tatacacatg cgggtcctga aattggtgtt gcttcaacaa aagcattcac agctcaggtt
      181 actgtattga caatgcttgc attgcttatt ggaaaagaaa aaggcacgtt ggataatgag
      241 caatatctga aaactgttgc agaactcgga cgtattcctg aaaaaatcag ccatttattg
      301 aaacaggata caataattgc agaatttgcc aaaacattta cgtacgctca gaatttcatt
      361 tacctgggtc gtggttataa tttccctgtt gctttggaag gtgctttaaa actgaaggaa
      421 atctcttata ttcatgctga aggttatcct gctgcagaga tgaagcacgg tcctattgcc
      481 ctgataagtc aggaaatgcc ggttgttgta attgctccaa gtgcaggtat gtacgaaaaa
      541 gtggttagca atatacagga gattaaggcg cgtaaaggta aaattatctc tattgtaacc
      601 gaaggcgatg tggtcgtaag aaatttatcc gactatacga tcagtattcc ggatacggag
      661 gaatgtctgg tgcctttatt agcagcaatt cctttgcagt tattagctta tcatattgcc
      721 gttgttaaag gttgtgatgt ggatcagccg cgtaatttgg caaagtctgt aactgtggaa
      781 tagtgtaaaa aatacccctg cgttaaacgt tggggttttt tatttgttgt atgttttcag
      841 tataataatt tggaaattag gctgaaaatt gatttatatc atttttctta tttaaaagag
      901 catttatatt tttttgaaat aaattatgtg cggaatagca atggttaggc tgttgaagcc
      961 tttagattat tatcaggaga aatacggaac atggcagtat ggtttacaga aaatgtacct
     1021 gcttatggaa aaacagcata atcggggtca ggaaggtgcc ggtttagcta ctgttaaact
     1081 tgatatgccg gcgggtgaag aatatatctg gcgcgaacgt gtggagggta aaaatgcgat
     1141 tcaggaaatt tttgcaacga ttaataaaaa aacgggatct gtttcgccgg aagtttataa
     1201 tgatgttgag agatcaaaac tggaattgcc ttttgccggt gaattgtatt tgggacattt
     1261 gcgttatagt actaccggaa gaagtgggtt gtcgtatgta catccattct tgcgtcgtca
     1321 taactggaaa aaccgtacga tggtgcttgc agggaatttc aacctgacaa acgttgatga
     1381 gttgtttgaa catttgactt tgaaaggaca acatccacgc gataaaggag atacattcct
     1441 gatgttggaa tcgctcggtt ttaaactcga tcaggaagta caaaaagaat acgataaaat
     1501 aaaacaacgc tatacaaacg acctggttat tactcaaaaa attgaggaaa acctagatat
     1561 agcatcattt atccggaagt cggaaaaaaa ctgggatggt ggatatgtga tttgtggaat
     1621 gttaggacat ggagactcat tcgttttccg cgattccaaa ggtattcgtc ctgcatttta
     1681 ttatatcgat gacgaaattg ttgtgactgc ttctgaacgt cccgttattc agacagctat
     1741 gaacgtgaaa gaagaaaata tccacgaact tcaaccagga gaggccatga ttattaaaaa
     1801 gaatggaacc attaagtttg aaaccattcg tcccgcagct gctgaattat caaaatgttc
     1861 tttcgagcgg atttatttct cgcgtggtag tgatattgat atttataagg aacgtaaaca
     1921 gcttggtgaa tcattagcac aacctattct gaaagctatc gataatgatg ttgaaaacac
     1981 agtgttctct tttatcccca atacagctga agtggctttt tatggaatga aagacggtat
     2041 caaagcggcg acggatgttc ctattcgtgt agaaaaagtg ctgattaaag atattaaact
     2101 acgtaccttt atttcaacca atgatgaacg aaatgatctg gcaactcacg tgtacgatgt
     2161 gacttatggt tcgatacgac gtggaaaagt agataatctt gttgctattg atgactcaat
     2221 tgtgcgtggt acaaccctga aacagagtat attgaaaata ctgaatcgtt tggaaccgaa
     2281 aaaaatcgtt atcgtgtctt catctcctca ggttcgtttc cctgattatt acggaattga
     2341 tatggctcgg atgaatgaat tttgtgcgtt cagagcggct atagctttac taaaagaatc
     2401 tggcagacag cacattattg atgaagtgta tcgtaaatcg aaagctcagg aaaatttacc
     2461 gaaggaagag gtaatcaatt atgtaactga aatctatgag ccatttactc aagatgaagt
     2521 ttcagtgaaa attgcacaaa tgcttacacc tgcggaagtt gattgtccgg tagagttagt
     2581 atatcaaact attgaaggac ttcataaagc ttgtccaaat catgcgggtg attggtattt
     2641 ctcaggaaat tatccaactc ctggtggtaa ccgtttggtg aataaagctt ttttggatta
     2701 ttatgaagat aaagacggac tgacttacgg ttgttagtca agcgttttta aaatcattca
     2761 ctaaatttgt atgcaaagcg aaaatttcat ttttaattct gaagctaatt gggaaactgt
     2821 gggtgaagga atgcgtcgtc aaatcctggg ttacgacgat cagataatgt tggtgaaaat
     2881 agaatttaaa gctggtggaa ttggttatgt tcatcaacat gttcaccgcc aatgttctta
     2941 tgttgtcagt ggagtgttcg aattccaggt gggtaaggaa actaaaattg taaaagctgg
     3001 ggacggacta tacgtggaaa ccaatgtttt acatggagtt aaatgtttgg aggaaggtgt
     3061 tttgattgat acatttagtc cggttcggga agattttctg acgtgatata ttatatttca
     3121 taaacaaaaa gagcttggtt ctgtattgga ccaagctctt tttgttttat tttaattgta
     3181 gaaattatac atttccctat cgaatcaaaa tacaaatgtt tgtaataaaa aaacagtagc
     3241 aaaactaaat tagccttgct acttgttttt tattaatgag tgttttatca ggctaaactc
     3301 ccaatgaagc tcttacagct tcaacttttt gattggcagc agcatcagca gcatcatatt
     3361 ctccgcggga tttcatttca ccacgaactt cgatatagaa cttgattttt ggctcagttc
     3421 ctgaaggacg aacagaaatc ttagttccat cttcagtaaa atactgcaat acattagatg
     3481 tggtcggaaa atcaagggta gattgctctc ctgtagcaac attagttgct ttaagagttt
     3541 cataatcttt gataagggcc acttttgaac cggcaatttc ctttggtgga ttattgcgga
     3601 agtcgctcat catttgagct atttcttcgg caccggattt acctttacgt actactgata
     3661 tacctttttc tttgccaaat ccgtattcaa catagatatc ctgcaataat tcaaataatg
     3721 tttttccatt atcttttgcc catgcagcta tttcggccat caatgtacat gcagaaactg
     3781 catctttatc gcgggcaaat tcttcagcca ggaatccgta gctttcttca cctccgccaa
     3841 tatactgttt gataccttcg ttttcacgaa tcacagctgc aatccattta aatccggtga
     3901 aacagtcgaa catttcaaca ccattgcgtt cagcaatttg tttgataatt tcagtagtca
     3961 caatcgtttt tacaatgtat tctttgccgg ttactttgcc aagttcattc caacgacgaa
     4021 taatataata aataaaaatc agtgcagttt ggtttccgtt gactaaaatc cattcgcctt
     4081 tatcgttctt taccgcaatg cctaaccggt cagcatcagg gtcagaagcc attacgatgt
     4141 cagcatctgt ttctattgct ttttttacag ccatatccaa tgctgcaggt tcttccggat
     4201 ttggagaaat aacagttggg aaatcaccgc taactacatt ttgttcaggt acaggaatga
     4261 tatttgtaaa tccgaatgct tttaacgctc ttggaaccaa cataacgccg gtgccgtgaa
     4321 tgggcgtgta aacaattttc aaatcattgt tgcgtttgat ggcgtccggc gataacgaaa
     4381 ttgttttgat tgcatcgatg tagggtttgt caatttcctc accaataatt tgtatcaaat
     4441 caggatttcc attgaatttg atgtcatcaa cacttttaat cttatttact tcggtaataa
     4501 cattttcgtc atgtggcaaa atcatttgac cgccatcatt ccaatatgct ttgtaaccgt
     4561 tatattcttt cggattgtga gaagcggtaa gaataattcc gctctggcag cccaaatgac
     4621 ggatagcgaa agaagcttca ggggtaggac ggaggtcttc gaataaatat actttaatcc
     4681 cgttggctga aaagatatt
//
LOCUS       DATDNM010000409         3162 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_906304, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000409 DATDNM010000000
VERSION     DATDNM010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3162
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_906304"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VI413_06925"
     CDS             <1..331
                     /locus_tag="VI413_06925"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914391.1"
                     /translation="SFTKGPVAQTVTPTAVSPISAITLTWTPVNTAIDNVEFSKLYNV
                     YPNPAVSSVYVTGSDIKEVQICSLAGKILLSSKEQKVNISVLPKGFYLAVIYAKDGMV
                     VKKIEKL"
     gene            514..975
                     /locus_tag="VI413_06930"
     CDS             514..975
                     /locus_tag="VI413_06930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4395 domain-containing protein"
                     /protein_id="HEY6914392.1"
                     /translation="MKTYAICPISDKRINEHVTRSNAFLTVLLLVSYILTANIFIIIF
                     LLIDFLFRAIELPQYSVLAVTSKKLVQLLSLKPKLINAGTKIFAARIGLFFNVAILVS
                     ALLGLNTLALSLVGVFGICAFLEAAFGFCVACQIYPFVYKLFYQSKLNVIK"
     gene            1180..2370
                     /gene="kbl"
                     /locus_tag="VI413_06935"
     CDS             1180..2370
                     /gene="kbl"
                     /locus_tag="VI413_06935"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004328142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008890 - glycine C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006567 - threonine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HEY6914393.1"
                     /translation="MYKGFKLYLQEELAEIEKAGLYKNERVIVSPQGAVIRVADGKEV
                     LNFCANNYLGLSNHPALIEAAKEGLNSHGYGVSSVRFICGTQDLHKQLEASIARFFGT
                     EDTILYAACFDANGGVFEPLLTEDDAIISDTLNHASIIDGVRLCKAQRYRYANADMAD
                     LEKQLLEAQNQCYRLIVTDGVFSMDGNVAPLDKIYELAEKYNAMIMVDESHSAGVVGE
                     TGRGLTERYNLRGKVEIITGTLGKAFGGAIGGFTTGKKEIIEMLRQRSRPYLFSNSLP
                     PMVAAAGIKMFEMMDETNDLQDKLHTNTAYFVEQMKVAGFDIKPTESAICAVMLYDAK
                     LSQEVAARLLDEGIYVVGFYFPVVPKDQARIRVQISAAHEREHLDKCIAAFIKVGKEF
                     NVIK"
     gene            2499..>3162
                     /locus_tag="VI413_06940"
     CDS             2499..>3162
                     /locus_tag="VI413_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY6914394.1"
                     /translation="MKALVKLRPEKGIWMADVPMPHVGINDVLIKIKKTAICGTDLHI
                     YKWDEWSQRTIKTPMTIGHEYVGEVVDKGRGVKNIQIGDRVTGEGHIACGHCRNCRRG
                     KLHVCENTVGVGVNRDGAFAEYLSLPAENVIHLDHRIPDEIAAIMDPFGNATHTALSF
                     PLIGEDVLITGAGLIGTMATAICRFAGARNIVVSDLSDYRLKIAKKMGATLTVNPAKG
                     ESI"
BASE COUNT          945 a          522 c          689 g         1006 t
ORIGIN      
        1 ttcttttacc aaaggcccag ttgcacaaac tgtgactcca accgctgtaa gtccgatttc
       61 tgctataaca ttgacatgga cccctgtgaa tacagccatt gataatgttg aattcagtaa
      121 attatataat gtatatccga atccggcagt ttcgtctgtt tacgttacag gcagtgacat
      181 taaagaagtt caaatttgtt ccctcgcagg taaaattctt ttatcaagca aagaacaaaa
      241 agtaaatata agtgtattgc caaaaggatt ttatcttgct gtaatatatg ctaaagatgg
      301 aatggttgta aaaaaaattg agaaattgta attaattatt atttgtttca ctgaattcgc
      361 taataaaatc ttagattttt ttagcgaatt ttttttatac aaataagaga ttatatacct
      421 gatttatggt atgtaaaata cacttaggat ggtattgtgg ctatttgatg acagctatat
      481 ctttgtatta tcaataatta atacaaaaat gatatgaaaa catatgctat ttgcccaatt
      541 tccgataaaa gaataaacga acacgttacc cgcagcaatg catttttgac tgttctgcta
      601 ttagtatctt atattcttac agctaatata ttcattataa tatttttact aatagatttt
      661 ttgttccgag ctatagagtt acctcaatat agtgtacttg cagttacttc aaaaaagtta
      721 gtacagctac tttcgttgaa accaaaatta attaatgcag gaacaaagat ttttgctgcc
      781 agaataggat tatttttcaa tgttgccatt cttgtttcgg cattgctcgg attaaacaca
      841 ttggctctat cattggttgg agtttttgga atttgtgctt ttcttgaagc cgcttttggt
      901 ttttgtgttg catgtcagat ttatccgttt gtatacaaac ttttttatca gtcaaaatta
      961 aatgtcataa aataaaatag aagttcacag ccttatctta ccttgtttat ctcgttttgt
     1021 ttcagtaata tagtttgctg ataattttaa gagtggacca attcaatctg agttggtcct
     1081 atttttttga aaattaagta ttgaaataca aataattcag tacttttgct aaaagtcaca
     1141 taaaataatt tttgtacgaa acgataaatt ttaatattta tgtataaagg atttaaattg
     1201 tatttgcaag aagagctggc cgaaatagaa aaggccggtt tatataaaaa tgaacgggtt
     1261 attgtttcgc ctcagggagc tgtaatccgt gttgcagacg gaaaagaggt gcttaacttc
     1321 tgtgcgaaca attatctggg tttatcgaat catccagcat tgatagaggc tgccaaagaa
     1381 ggacttaatt cgcatggtta cggagtttcg tcggtgcgtt ttatttgtgg aacgcaggac
     1441 ttgcacaagc agctggaagc ttctattgcc cgctttttcg gaacggaaga tactatttta
     1501 tatgcagcct gctttgatgc caatggtgga gtttttgagc cgctgctaac ggaagatgat
     1561 gccattattt cggatacgct gaaccatgct tccattattg acggggtgcg gctttgtaaa
     1621 gcgcaacgtt accgctatgc taatgctgac atggcagatt tggaaaaaca gctacttgag
     1681 gctcagaatc agtgttaccg cttgattgtg actgatggtg ttttttcaat ggacggaaat
     1741 gtggcaccac ttgataaaat atatgaattg gccgaaaaat acaatgccat gattatggtg
     1801 gatgaatccc attcggctgg tgtggttggt gaaacaggtc gaggactaac tgagcgttat
     1861 aatctgcgtg ggaaagttga aattattacg ggaacacttg gtaaagcttt tggtggagca
     1921 attggcggat ttacaaccgg aaaaaaagaa attattgaga tgttgcgtca gcgttcacgc
     1981 ccgtatttgt tttcaaattc tcttccaccc atggtggctg ctgcaggaat taaaatgttt
     2041 gaaatgatgg acgaaacaaa cgacctgcag gataaacttc acaccaatac tgcttatttt
     2101 gtagaacaaa tgaaggttgc gggatttgat atcaaaccta ccgaatcagc aatttgtgcc
     2161 gttatgttgt atgatgcaaa gttgtcgcaa gaggtggcag cccgtttgct cgacgaggga
     2221 atctacgtgg ttggcttcta ctttccggtg gttccaaaag atcaggcacg tattcgggtt
     2281 cagatttctg cagcgcacga acgggaacat ttggataaat gtattgctgc atttataaaa
     2341 gtgggtaagg aattcaatgt gattaaatga ttagatgatg tggggattgg ttgatacatc
     2401 aatttgttga ttgtataatt ttatcgttgt ttcattaaaa tatcaattga ttacgtcgtt
     2461 tatttatcag ctaattatca cattatcaaa ttaatattat gaaagcactc gtaaaacttc
     2521 gtcccgaaaa aggaatttgg atggcagatg tacccatgcc acacgtcgga attaacgatg
     2581 ttttgattaa aataaagaaa acggctattt gcggaaccga tttgcatatt tacaaatggg
     2641 acgaatggtc gcaacgaaca ataaaaaccc cgatgaccat tgggcatgaa tatgtgggcg
     2701 aagtggttga caagggccgt ggtgtaaaga atatccagat tggtgaccgc gtaacgggtg
     2761 aaggacacat tgcttgcggg cattgcagga attgtcgtcg cgggaaactg catgtgtgtg
     2821 aaaacactgt tggggtagga gtaaaccgcg atggtgcttt tgctgagtat ttgtcgcttc
     2881 cggctgaaaa cgtcattcat ttggatcacc ggattccgga cgaaattgca gccatcatgg
     2941 atccgtttgg aaatgctaca cacactgcct tgtcgtttcc tctgattggt gaggatgtgc
     3001 tgataaccgg tgccggactt atcggaacta tggctacagc catttgtcgc tttgccggag
     3061 cacgcaacat tgtggtgagc gacctgagcg attatcgtct gaaaattgca aaaaaaatgg
     3121 gagcaacact caccgtgaac ccggctaaag gagaatcgat ag
//
LOCUS       DATDNM010000410         2085 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_159190, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000410 DATDNM010000000
VERSION     DATDNM010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159190"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..507)
                     /locus_tag="VI413_06945"
     CDS             complement(<1..507)
                     /locus_tag="VI413_06945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009038766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEY6914395.1"
                     /translation="MIVCIAEKPSVARDIAEILGAKTRKDGYIEGNGYQVTWTFGHLC
                     GLLEPHEYTPDWKAWALSHLPMIPQRFGIKVMNDSGIQKQFKVIETLMANADEVVNCG
                     DAGQEGELIQRWVMQKAMCKCPVKRLWISSLTEEAIREGFSKLKDQSQFQSLYEAGLS
                     RAIGDWLLG"
     gene            811..2028
                     /locus_tag="VI413_06950"
     CDS             811..2028
                     /locus_tag="VI413_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FprA family A-type flavoprotein"
                     /protein_id="HEY6914396.1"
                     /translation="MFQNQQIAKDIFYVGVNDRQKHKFENMLPLPNGVSYNAYLIADE
                     KTALIDTVDISFGDIFIDKIQSQLQGRTLDYLIINHMEPDHSGSIRLIRKYYPDMVIV
                     GNNKTLSMVEGYYGVADNTLEIKDGEILSLGNHKLQFHFTPMVHWPETMMTYDLDQQV
                     LFSGDAFGCFGTLDGAVVDTNMNIDRYWDEMIRYYANIVGKYGAPVQKALKKLTPLDF
                     KLICSTHGPVWKEYISEVVDMYDQMSRYHGEDGVVIVYGSMYGNTELMAETVAQGLAQ
                     AGVKNIIIHNVSKSDSSVIIRDIFKYKGLIVGSPTYCNELYPEVESLLRKIEIRGVKN
                     RVFGCFGSFTWASAAVKRLTTFVETMKWKSAELNVDEKQGLKTVNYDACLELGRQVAT
                     LMKNHVDDPEHCV"
BASE COUNT          644 a          407 c          416 g          618 t
ORIGIN      
        1 acccaacaac cagtctccaa ttgcccgcga aagtcctgcc tcataaagag attgaaactg
       61 gctttgatct ttgagcttcg aaaaaccttc acgtatggct tcttcggtca gcgaagaaat
      121 ccaaagtcgt ttcaccggac atttgcacat ggccttttgc attacccaac gctgaataag
      181 ttccccttcc tggccggcat caccgcagtt caccacttca tcagcgttag ccattagggt
      241 ttcaatcact ttgaattgct tttgaatgcc actgtcgttc attactttaa taccaaaacg
      301 ttgtggaatc atgggtaaat gactcaatgc ccaggctttc cagtcgggcg tatattcatg
      361 cggttcaagc aatccacaaa gatgcccgaa cgtccaggtt acctgataac cgtttccttc
      421 aatatatcca tcttttcggg ttttagctcc aagaatttca gcaatatcac gcgccacact
      481 gggcttttca gcaatgcaaa caatcatctt ttttgttggt tagggacaag ttgcgacttg
      541 tacgtccgta cgtttaaatt cgtgtaattt ggtatatcat gcaaaagtac tgaaaatctt
      601 tcattactta caacacatgt aatcagtaca gccgcactca tcattaacct aaaaaacaca
      661 ttatagacgt aatctattca gttataacca gtatgaattg tgaaatatgt atttaaaatt
      721 gcttaaattg ttttatcttt gcacccgaaa acaaaccctg aggtataggt gttttaaggc
      781 atattattaa acgtaagaaa acttagttac atgtttcaaa atcaacaaat tgcaaaagac
      841 attttttatg taggtgttaa cgatcggcag aagcacaaat tcgaaaatat gcttcctctt
      901 cccaatggcg tttcatacaa tgcttatctg attgcagatg agaaaacagc tttgatagat
      961 actgttgaca tttcatttgg cgacatattt atagacaaaa tacaatcaca actacaagga
     1021 agaactctcg actatctgat tatcaaccac atggagcctg atcattccgg ttctatccgc
     1081 ttgattcgca agtattaccc cgatatggtt attgttggaa acaataaaac attaagcatg
     1141 gtagaaggtt attacggagt ggctgataat acattggaaa ttaaagatgg cgaaatcctt
     1201 tcgttgggaa atcacaaact tcagtttcat ttcacgccta tggttcactg gcctgaaacc
     1261 atgatgactt acgatttaga tcaacaagtc ctgttttcgg gcgacgcttt tggttgtttt
     1321 ggaacactgg atggagctgt ggtggatacc aacatgaata tagacaggta ttgggacgaa
     1381 atgattcgtt attatgccaa tattgtgggc aaatatggag cacctgttca aaaagcactg
     1441 aaaaaactca ctcctcttga tttcaaatta atttgtagca cgcatgggcc tgtttggaaa
     1501 gaatacatct cggaagttgt ggatatgtac gaccaaatga gtcgttatca tggcgaagat
     1561 ggtgttgtga ttgtttatgg atccatgtat ggaaatactg aattgatggc tgaaaccgtt
     1621 gcacagggtt tggctcaggc aggagtcaaa aacattatca tacacaacgt atcaaaatcc
     1681 gattcatctg taattattcg cgacatattc aaatataagg gcttaattgt aggtagccca
     1741 acttattgca atgagttgta tccggaagta gaatcacttt tgcgtaaaat agaaatacgt
     1801 ggtgtaaaaa accgtgtatt cggctgtttc ggttcattta cctgggccag tgctgctgta
     1861 aaacgattga ctacatttgt tgaaactatg aagtggaaat cggcagaatt gaatgttgac
     1921 gaaaaacaag gattgaaaac cgtcaattat gatgcatgcc ttgaacttgg acgccaggtt
     1981 gcaacgctga tgaaaaatca tgttgacgac cctgaacact gcgtttaaaa aagcagtaag
     2041 aggtaagcag caagaagtaa aaacgatttc ttgtgttagt cgtca
//
LOCUS       DATDNM010000411         2296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_372039, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000411 DATDNM010000000
VERSION     DATDNM010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372039"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1268
                     /locus_tag="VI413_06955"
     CDS             <1..1268
                     /locus_tag="VI413_06955"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914397.1"
                     /translation="GLPLLGQGNRIIEALANCDLKVKGITFQNGRQIGYLPGGAIFFA
                     GNKLEVDSCRFIDNQAGSCGGAIGARAQTVIVKNSYFQGDNILGGGARGAAIMQCGPA
                     TGTIRGTLSVQNCAFYNCTTQTHGYSYVIAIYDSSLSNEGGGYSNTGKIDVTNCTFSE
                     NSSVTTYQAAIDVSDGDCDVYLVNNTFYKNSECAFRLMSNKAFLANNVIVGARQGIMT
                     DYKVADGRTPMVAMNNIVVGTEGGINGGIDDACFTSAAATNNNTISTTAAYPLTKTAL
                     ASSLSTDNFVPYLPITSTSSTLIDAGTDNVLAQFGANYVLTTDTRGLLANNKKDIGAY
                     EYLALTGISFPTYVSENYQVSLSENTLTVKNRSEKSFTLTVVNVAGKTVCSTRVASSV
                     ELDKSRFGKGVFILLLTDGTETGSRKVVF"
     gene            1323..>2296
                     /locus_tag="VI413_06960"
     CDS             1323..>2296
                     /locus_tag="VI413_06960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914398.1"
                     /translation="MMKSKYCAVLVLLSFFSLAHSQEKIVLFDYDEVYPMTSSWADSM
                     EPTLNPAPDALNDSRISGLFIHNAQWSEIEIRTDDSNMDGRFYNTVELKAFIPANMPD
                     GKVSITCKGLGSSRESRRRYDVFEVTPPVKGKWFKIEHSFLCGYPIGLIQMGYRRSEV
                     PNPSEDIAYFDDLIFHQTTSNDICLYRESFCVVYPENENADFIGNPTNRAGNWVGNVD
                     LTSTGNIRLVKYPNTVSHVMRMTTGDADIVFPGITNLDGYDNLRVVFDSRWVVDETKR
                     AAFSAAANVSKSPVVKAKIGNGNWTNVAVQPVTDSWQTQSIVISPESA"
BASE COUNT          669 a          404 c          529 g          694 t
ORIGIN      
        1 gtggattgcc tcttttagga caaggaaacc gtattattga agctttggcc aattgtgatt
       61 tgaaagttaa aggcatcact ttccagaatg gccgtcagat tggttatctt ccgggaggcg
      121 ctatattctt tgccggaaac aaactggaag tagatagttg ccggtttatc gataatcagg
      181 caggctcgtg tggtggagct attggtgcca gagcccaaac tgtcattgtg aagaattcat
      241 attttcaggg tgataatatt ttaggaggtg gagccagagg tgctgccatt atgcaatgtg
      301 gaccagcaac aggaacaatt cggggaaccc tgtcggttca gaattgtgca ttttacaact
      361 gtaccacgca aacacatgga tatagttatg ttatagctat ttatgattct tctttaagca
      421 atgagggtgg cggttatagt aataccggta aaattgatgt tacaaattgt acattctcag
      481 aaaatagctc ggtaaccact tatcaggctg ctattgatgt gagtgatggt gattgcgatg
      541 tttacctggt taataatact ttttataaga attctgaatg tgcttttcgc ttgatgtcaa
      601 ataaagcttt tctggcaaat aatgtaattg ttggtgctcg gcaggggatt atgaccgatt
      661 ataaagtggc agatggacgg acaccaatgg tggcaatgaa taatattgta gttggaactg
      721 aaggaggcat caacggtgga attgacgatg cttgttttac aagtgcagcc gcaacaaaca
      781 ataatactat aagcacaacg gctgcatatc cccttactaa aactgcttta gccagttctc
      841 tgtctactga caattttgtg ccttatctcc cgataacttc aacttcaagt acattgattg
      901 atgccggtac agataatgtt ttggcacagt ttggagccaa ttatgtatta actactgata
      961 caagaggtct cttggcaaat aacaaaaaag atattggtgc ctatgaatac cttgcgctca
     1021 ctggaatctc atttccaacg tatgtctctg aaaactatca ggtttctctg tctgaaaaca
     1081 cgctgacagt aaagaataga tccgaaaaat cattcacgtt gactgttgta aacgtagctg
     1141 gaaaaactgt ctgttcaacc cgggttgcaa gttcggtgga attggataaa agcaggtttg
     1201 gaaaaggagt atttattcta ttgctcaccg atggaacaga aacaggttca agaaaagtag
     1261 tgttctaaat taaactatca ataaatgtgg taagacaatt ctcttgccgt tattaaaata
     1321 atatgatgaa aagtaaatat tgtgctgtat tagtcctact aagttttttt tcgttagctc
     1381 attcgcagga aaaaatagtg ctttttgatt atgatgaagt gtacccaatg acatcgtcat
     1441 gggccgattc tatggagcct acattaaatc ccgcacccga tgctttgaac gactcacgta
     1501 ttagtggact ttttattcac aatgctcagt ggagtgaaat tgaaatcaga acggatgatt
     1561 ccaatatgga tggtcgtttt tacaatacgg ttgagctaaa agcttttatt cctgccaaca
     1621 tgcccgatgg taaagtcagc attacctgca aaggacttgg aagctcgcgc gaaagccgta
     1681 ggcgctatga tgtttttgaa gtgactcctc cggtgaaagg aaaatggttt aaaattgagc
     1741 attcattctt atgtggttat ccgattggtc tgattcagat gggctatcgt aggagtgaag
     1801 tgccaaatcc gtcggaagat attgcgtatt tcgacgattt gatttttcat caaaccactt
     1861 ccaacgatat ttgtctgtat cgtgaatctt tttgtgttgt ttatcccgag aatgaaaatg
     1921 ccgattttat tggaaatcca acgaacaggg ccggcaattg ggttggtaat gttgatttaa
     1981 cctctaccgg caatatccgt ttggtaaaat acccgaatac ggtcagccat gtaatgcgaa
     2041 tgactacggg tgatgctgat atagtgtttc cgggcattac aaatctcgat ggatatgata
     2101 acctgagggt ggtatttgac tcacgctggg tggttgatga aactaagaga gccgcgttca
     2161 gtgctgctgc gaatgtatct aaaagccctg ttgtgaaagc aaaaattggt aatggcaatt
     2221 ggacgaatgt agctgttcaa ccagttacag attcgtggca aacgcagtcg atcgttattt
     2281 caccggaaag tgcaca
//
LOCUS       DATDNM010000412         2010 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1867789, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000412 DATDNM010000000
VERSION     DATDNM010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1867789"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..852)
                     /locus_tag="VI413_06965"
     CDS             complement(<1..852)
                     /locus_tag="VI413_06965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914399.1"
                     /translation="MKKILLSALLSAFVLGGAFAQFNLSTNTTIGQVLKNVNYNDKDT
                     FTVDFNSPTTTVSTFTTKVIKVTSLNYGKDSVVIKKYQTQKGLQVKAFLDATTTTEYK
                     IGSADCNNYGSNRNPLAIYSVDSLKKILGGTNIVRANVADSISRPAACLFRLADGDAA
                     FGLYPGKAKRVEYGFYISMVGKQVTSDITFDIRTLDAGNSGKTVSYGLRVYKSSTFTP
                     ANAIGDSVANFYVTGSGVTSKSLAAAINVDPSALSNKTIYIIIKTLGTTNASGVTDAV
                     PNPVDANN"
     gene            1088..>2010
                     /locus_tag="VI413_06970"
     CDS             1088..>2010
                     /locus_tag="VI413_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010537911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6914400.1"
                     /translation="MIKILKLLAIFLFVIQVCKAEKDFFVSTSFHEPATDGLRFIYSK
                     DGIHWDSIPGTWLKPAVGNQKVLRDPSITRTPDGTFHLVWTSSWKGDLGFGYAYSKDL
                     VHWSKQQMIPVMKNEPTAVNVWAPEIFYDNEKNEFVVVWASCVPNRFKKGLEDEKNNH
                     RLFYMTTKDFKTLSPTKLLYDPGFSSIDATIVKRAKSDYVLVFKDNTRPNRNLKVAFA
                     KSPTGPYTKASTTFSENFVDGPTVEKIGDRYVIYFDEYKKFSFGAVVTKDFIHYSNIS
                     KEISVPEGHKHGTIFKAPASMIENLKKHQLS"
BASE COUNT          637 a          388 c          357 g          628 t
ORIGIN      
        1 gttattggca tcaaccggat taggaacagc atcagttaca cctgaggcgt tggtagttcc
       61 gagtgtttta ataataatat aaatcgtttt attagacaat gcgcttggat ctacattaat
      121 tgccgctgct aaactttttg aagtcacacc acttcctgtc acataaaaat tagcaactga
      181 gtctccaatt gcatttgcag gagtaaaagt tgaacttttg taaactctta atccataaga
      241 aactgtcttt ccggaattac cagcatcaag tgttctgata tcaaaagtaa tatcacttgt
      301 cacctgtttc cctaccatac taatataaaa accatactca actctttttg cctttcccgg
      361 gtaaagcccg aaagcagcat caccatccgc cagcctgaac aaacaggcag ctggccttga
      421 aattgagtca gccacattag ctctcacaat attggtacct cccagaattt ttttcaatga
      481 gtcaacactg taaatagcaa gaggatttct gttagaaccg taattattac agtctgcact
      541 tcctatcttg tattcagtgg tagttgttgc atccaaaaat gcctttacct gcagtccttt
      601 ttgggtttga tattttttga taacaaccga gtctttcccg taattaagac tggtgacttt
      661 tatcactttt gttgtaaaag ttgaaaccgt agtagtagga ctattgaagt ctacagtaaa
      721 tgtgtctttg tcattgtagt tcacattttt taaaacttga ccaattgtgg tgtttgtcga
      781 caaattaaat tgagcgaaag ccccgcccaa aacgaaagca cttaatagtg ctgaaagtaa
      841 gatttttttc ataaaaattt atttttaaag ttgatttttg tttgtgtttt tacataaaga
      901 cgtatcagta aaacctctgt actcattttt atttcaaatt cgttgaacta aaaatatgcc
      961 gacattaaac aacatgattt attaaatgaa accgaaaacc attgagtact atttaggctt
     1021 tactacgtca ttgtttcagg tatgaaaata aggtatatgt atattttaat ctgtagaata
     1081 taaagtgatg ataaagattt taaagctatt agccatcttt ctgtttgtaa ttcaagtctg
     1141 taaagctgag aaagattttt ttgtttcaac ttcttttcac gaacctgcca ctgatggatt
     1201 gcgcttcatc tatagcaagg atggcattca ttgggacagc attccaggaa catggttgaa
     1261 acctgctgtt ggcaatcaaa aagttttgcg cgatccatcc attacacgca ccccggatgg
     1321 cactttccac ctggtgtgga caagcagttg gaagggcgat ttgggttttg gatatgcata
     1381 ctctaaagat cttgttcact ggtcgaaaca gcaaatgata cccgttatga aaaatgaacc
     1441 gacagcagta aacgtatggg ctccggaaat tttttatgac aatgaaaaga atgagtttgt
     1501 ggtcgtttgg gcatcatgcg ttccaaaccg tttcaaaaaa ggccttgaag atgagaagaa
     1561 taaccatcga ttgttctaca tgacgaccaa agactttaag acattatcac ccacaaaact
     1621 tttatacgat cccggattca gctccattga tgcaactatt gtaaaacggg caaaaagcga
     1681 ttatgtatta gtttttaaag acaatacccg tccgaaccgc aacctgaaag tagcttttgc
     1741 aaaatcgcct acaggacctt atacaaaggc cagcaccaca ttttccgaaa acttcgttga
     1801 tggcccgaca gtagaaaaaa tcggtgacag gtatgttatc tatttcgatg aatataaaaa
     1861 attctcattc ggagctgttg taacaaaaga ttttatccat tattccaaca tctccaaaga
     1921 aatttcagta ccggaaggcc ataagcacgg caccattttt aaagctcccg cttcaatgat
     1981 tgaaaattta aaaaaacatc aattgagtta
//
LOCUS       DATDNM010000413         2121 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1441646, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000413 DATDNM010000000
VERSION     DATDNM010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2121
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1441646"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..669
                     /locus_tag="VI413_06975"
     CDS             <1..669
                     /locus_tag="VI413_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEY6914401.1"
                     /translation="QRGIMFCRTKTAAKRLAKQLAGFVVVADALHGNLNQEMRDKVMR
                     GFKKNRINLLVATDIAARGIDVKDLDYIIHYHLPEKSEHYTHRSGRTARAGKSGISVC
                     LVKTEDLPELKILETDLNISFTEIGVELLPETSSKAPITMYMNMGFGQGFTKNTLADF
                     LVEEAGLTLSDIKNVVVQDNRSYFDVPAKFEEQIFINLKGYKLAHRNLKLTLDAERSK
                     RNLY"
     gene            complement(743..1690)
                     /locus_tag="VI413_06980"
     CDS             complement(743..1690)
                     /locus_tag="VI413_06980"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6914402.1"
                     /translation="MKKEWLLLTMLCLLSVVFVSCNRKEQKEKQIVIAIIPKVDNAVF
                     DQVKESAVEAAKELGIVVTWEAPTSIDGKKQKELIENLINYKVDGILISCNDAEMLKE
                     SINKAIKAGIKVGTFDSDSPKSDRIFYIGTDNKKAGKVCAETMLGLYKKANKTPEQIV
                     ILSGGMNALNMTERISGFRSVMGDSKIDKVLTSLEIPDFGKELLSYELTHNKQINGVQ
                     MVWGVPVLSGGVDSVPALLAFMKRGGISIFFDVSKPLLKYIKENPNCATMKQDFHSMG
                     YDGVKNMYNAILDKPYKMEILYDVKVIDQTNAEKELADL"
BASE COUNT          636 a          415 c          374 g          696 t
ORIGIN      
        1 caacgtggaa ttatgttttg ccgtaccaaa acggccgcta aacgattggc aaagcagttg
       61 gccggattcg ttgtggtagc tgatgcgcta catggcaacc tgaatcagga aatgcgcgac
      121 aaagtgatgc gcggattcaa gaaaaaccgc atcaatctgc ttgttgctac ggatattgca
      181 gcccgtggaa ttgatgtaaa agacctggat tacattattc attatcattt gcccgaaaaa
      241 tcagaacact acacgcaccg tagcggacgc accgcgcggg ccggaaaatc aggaatatcg
      301 gtttgtttgg tgaaaactga agacctaccc gaattaaaaa tactggaaac ggatttgaat
      361 atctctttca cagagatagg agtggagttg cttcctgaaa ccagctctaa agcaccaata
      421 accatgtata tgaatatggg attcggacaa gggtttacaa aaaatacgct tgctgatttt
      481 ttggtggaag aagccgggct caccctttcg gatatcaaaa atgtggtagt gcaggataat
      541 cgatcttatt ttgatgttcc tgccaaattc gaggaacaaa tcttcataaa cctgaagggt
      601 tataaactgg cacacagaaa tttgaagctc acgcttgatg ccgagcggag caaacggaat
      661 ctgtattgag gaaacataat aaacaagaaa aggatttgcc cagttaggca aacccttttt
      721 cttgtttaag tattgcttct atttataaat ctgccagttc tttttctgca ttagtctggt
      781 caataacttt cacatcgtac agaatttcca ttttgtaagg tttgtccaga atcgcattgt
      841 acatgttttt tacaccatca taacccatgg aatgaaaatc ctgtttcata gtggcgcaat
      901 tcgggttttc cttaatatat ttcaacaggg gtttagatac atcaaaaaat atggaaatac
      961 ctcctctttt cataaatgcc agcaaagccg gaacactgtc tacacctccg ctcagtacag
     1021 gtacacccca aaccatttga actccgttga tttgcttgtt gtgagttaat tcgtaactca
     1081 ataattcttt accgaaatca ggtatttcta atgaagtaag cactttatca atttttgagt
     1141 cacccattac agaccggaat ccggatattc tttcggtcat gttcagggca ttcattccac
     1201 cacttaaaat gacaatttgt tcaggtgttt tgttagcctt tttatataaa cccaacatgg
     1261 tttcagcaca tactttaccg gcctttttat tatctgttcc gatatagaaa attcgatcgc
     1321 ttttggggct gtcggagtca aaagtaccta ccttaatacc cgctttaata gctttattga
     1381 tagattcttt aagcatttcg gcatcgttgc agctaatcaa aattccatct actttataat
     1441 taatcaggtt ttcaattaat tctttctgtt tttttccatc aatagaagta ggagcttccc
     1501 aggttactac aattccaagc tcttttgccg cttcaaccgc actttctttg acctgatcga
     1561 agactgcatt atctactttt ggaattattg ctataacaat ctgtttttct ttttgctctt
     1621 tccgattgca cgaaacaaaa acaaccgata aaaggcataa cattgtaagt aaaagccatt
     1681 cttttttcat aatataaata ttaaaagttt atttatcaat cagttattta tatccaagca
     1741 ttcatttcca gctaattaga cggagagggt taaaaagtga tttagctgta ttttctttat
     1801 tcttaaacac tcccaaacaa taatttgttt tttatttttc ctattttgtt catatatata
     1861 cataattata aattagaatc ggaaatagat gtttatatgc tgatatttac ggctttgaga
     1921 ttgcttttgt ctgaaataaa aattggctga atttcaaagg agaaattcag ccaattctat
     1981 aaatgcattc agcaatatta caataattct ttaagctctt ttgcaaattc ttttacttct
     2041 tcttccgttg tgtcaaacga gcacatccag cgttgttcgt gagtttcggc atcccattcg
     2101 taaaaaggat attgagcccg t
//
LOCUS       DATDNM010000414         3048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_907057, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000414 DATDNM010000000
VERSION     DATDNM010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3048
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907057"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..832
                     /gene="dnaN"
                     /locus_tag="VI413_06985"
     CDS             <1..832
                     /gene="dnaN"
                     /locus_tag="VI413_06985"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEY6914403.1"
                     /translation="ANGSYNFIGQNGDEYPRMPQLQDDARSLSLPVPTLATGISKTLF
                     CTADDELRPVMNGVFFDITADSLTLVATDAHKLVRYKTTHTSVSVEGEETVNFILPKK
                     PATMLKNILPKESGEVEIRFDSKNAHFKLANYTMICRQVEGRFPNYNGVIPKTNPYKI
                     IIDRATLLNALKRVSVFANQASNLVKLAFGGNQIHISAQDIDFSISAEETISCQFEGE
                     PIKIGFKSSFLIEILGNINASDIVFELSDASRAGLILPFENEANEEILMLLMPMLLND
                     "
     gene            970..1737
                     /locus_tag="VI413_06990"
     CDS             970..1737
                     /locus_tag="VI413_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HEY6914404.1"
                     /translation="MKLNLKNPLVFFDLETTGTTIVTDRIVEIAYHKVSPNGREETKS
                     IRINPEMPIPASASAIHGIYDADVADCPTFKSVAKEIARDIEGCDLAGYNSNRFDIPL
                     LAEELLRAEVDIDLSKRKFVDVQVVFHKMEARTLAAAYKFYCDKDLVGAHGAEADTLA
                     TYEVLMSQLDRYPELKNDVEFLSKFTTQNNNVDFAGRMIYNDKGEEIINFGKYKGQKV
                     TEVLKNDFGYYGWMMNSDFSLHTKKMLTNIKLRDFNK"
     gene            complement(1838..>3048)
                     /locus_tag="VI413_06995"
     CDS             complement(1838..>3048)
                     /locus_tag="VI413_06995"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY6914405.1"
                     /translation="IDNIKSLLTLQYKDYEIIVVNDGSTDQTLEKIIEYFELVKLEKA
                     YESDLACAPIKGIYQSTKVAYSQLVVVDKENGGKADALNAGINLSKNDLFLAIDVDCI
                     IESDAILRMVKPFIDDTKKIVVASGGTVRIANSCEITNGKITKIRYPQNLWAKFQVIE
                     YFRAFTLGRMAWSKLNGLLIISGAFGLFDRKRVINAGGYDINSVGEDLELVIRLRRYM
                     HDVEEKRYRVAFIPDPMCWTEVPETLKTLSRQRNRWTRGGIGTILKHRKMFLNPKYGL
                     IGMISFPYWILFEWLAPIVQLSGILYFILIILIGFLNSYVFLSLIFFVLAFSGMYSIL
                     AIFLEAYTYNKYDGKRFLSRSITFTILEMVIYQPLNMFFSISGNFDFFIKKNNRHWGE
                     MTRNGFTTKN"
BASE COUNT          907 a          567 c          577 g          997 t
ORIGIN      
        1 tgccaacgga tcgtataatt ttattggtca gaacggcgat gaatatccac gcatgccaca
       61 attgcaggac gatgcacgtt cgctatcgct gcctgttcca acgcttgcta cgggtatctc
      121 gaaaactctt ttctgtactg ccgacgatga attgcgtccg gtaatgaacg gtgttttctt
      181 tgatattact gccgatagcc tgactttggt ggcgactgat gcacataagc tggtacggta
      241 taaaacaaca catacttctg tttctgtgga aggtgaagaa actgtaaact ttattttgcc
      301 aaagaaaccg gctacaatgt tgaaaaatat tttgcctaaa gaaagcggtg aagtggaaat
      361 tcgtttcgac agcaagaatg cccattttaa attggctaat tacaccatga tttgccgtca
      421 ggttgaaggt cgttttccta actacaacgg cgttatccct aaaacaaatc catataaaat
      481 cattatcgat cgtgcaacat tgcttaatgc gctgaaacgt gtttcggttt ttgccaatca
      541 ggcaagcaat cttgtgaagt tggcttttgg tggaaaccag attcatattt cggcacagga
      601 tatcgatttc tctatttcgg ctgaagaaac tatcagttgc cagtttgaag gtgagccaat
      661 taaaattggt tttaaatctt cattcctgat tgaaattctg ggaaatatca atgcttctga
      721 tatcgttttc gaattgtcgg atgcttcacg tgcaggtttg atacttcctt ttgaaaatga
      781 agcaaatgaa gagattctaa tgctgttgat gccgatgttg cttaacgatt aaaaagaaac
      841 ggtaatcaag actgaatttt gctcttaaat aaatttttaa aggtcaaata tctgagatat
      901 ttggccttta attttctttt cctactaaaa tatttatcat aagtctttgg gcttttagac
      961 tctcgaaaaa tgaaactcaa cttaaagaat ccacttgttt tttttgatct tgaaacaaca
     1021 ggaaccacta tcgtgacaga tcgcattgta gaaattgctt atcacaaagt gtcgccaaac
     1081 ggccgcgaag aaacaaaatc aattcgtata aatccggaaa tgccaattcc ggcatctgca
     1141 tctgcaatac atggaattta tgatgccgat gtggccgatt gcccaacgtt taagtctgta
     1201 gccaaagaga tagcgcgcga cattgaaggc tgtgatttgg ccggatataa ttcaaatcgt
     1261 tttgacattc cattgttggc tgaggagttg ctgcgtgccg aagtggatat tgatttgtct
     1321 aaacggaaat ttgtagatgt gcaggtagtt ttccacaaaa tggaagcacg tacgcttgct
     1381 gctgcttaca aattttactg cgataaagat ttagtggggg cgcatggggc cgaagctgat
     1441 acgctggcaa cttatgaagt gcttatgtct cagttggacc gttatcctga attaaaaaat
     1501 gatgtggagt ttctttccaa attcaccact cagaataata atgttgactt tgctggacgc
     1561 atgatttaca acgataaagg cgaagaaatt atcaatttcg gcaaatataa aggccaaaaa
     1621 gtgactgaag tattgaaaaa tgatttcggt tattatggtt ggatgatgaa tagtgatttc
     1681 tcattacata caaagaagat gttgactaac ataaagttgc gagattttaa taagtaaaat
     1741 ttgccgcttc ttgtgtactg ttcggtcgtt ttacgctcgt ttataacttg tagcgcagct
     1801 gtattcgtct gtttttgctt cctgaaagct ctcactatta gtttttggtt gtaaatccat
     1861 ttctggtcat ttctccccag tgtctgttgt tctttttgat aaagaaatca aaattgccgg
     1921 aaatggaaaa aaacatgttt aaaggctgat aaataaccat ctcaaggata gtaaacgtga
     1981 tagatcgtga taagaatctt ttaccgtcgt atttattgta tgtataagct tcaagaaaga
     2041 ttgcaagtat tgaatacatt ccggaaaatg ctaacacaaa aaagattaat gaaagaaata
     2101 catatgaatt taagaatcca attagtataa tcaaaataaa atacagaatc ccacttaact
     2161 gcacgatagg agctagccat tcaaaaagaa tccagtaagg gaagcttatc attccaatta
     2221 agccatactt cggatttaaa aacattttcc tatgtttaag tattgtcccg attccacctc
     2281 tggtccagcg gtttctttgt ctcgagagtg tttttaaagt ttccggtact tcggtccaac
     2341 acattgggtc ggggataaat gccacccggt atctcttctc ttccacatcg tgcatgtatc
     2401 ttctgagtct tatcactaac tccaggtctt ctccaaccga atttatatcg tagccccctg
     2461 cgttaataac tcttttgcga tcaaacagcc caaaagcccc ggaaataatt aatagtccat
     2521 tgagtttact ccaggccatt cgtccaaggg taaaagctct gaaatattct atgacctgaa
     2581 attttgccca taggttttgt ggataccgga tttttgtaat ttttccattc gtaatctcgc
     2641 aagagtttgc gatacgtact gttccacccg atgcaacaac tattttcttt gtatcatcaa
     2701 taaatggttt taccattctt aatatagcat cagattcgat tatgcaatct acatcaatgg
     2761 ctaaaaataa atcatttttt gataaattaa ttcctgcatt gagtgcatct gcttttcctc
     2821 cattttcttt atctacaact actagctggc tgtaagcgac ttttgttgat tgatatattc
     2881 ctttgattgg cgcgcaagct aaatcagatt cgtatgcttt ttctaatttt actaattcaa
     2941 aatactctat tattttttcc aatgtttggt ctgtactgcc atcatttaca acaataattt
     3001 cgtagtcctt atattgtaac gtcaagagcg acttaatgtt atcaatta
//
LOCUS       DATDNM010000415         2766 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_907513, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000415 DATDNM010000000
VERSION     DATDNM010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907513"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1399)
                     /locus_tag="VI413_07000"
     CDS             complement(<1..1399)
                     /locus_tag="VI413_07000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-mannosidase"
                     /protein_id="HEY6914406.1"
                     /translation="MSRLPSPQREGMRSFVHTKNAHFELNAEPCYFIGTNFWYGAILG
                     SKGEGGNRERLIRELDFMKANGISNLRVLIGADGENGIASKVEPTLQIKPGQYNDAIF
                     DGLDFLLAEMSKRNMKAVLFFTNSWEWSGGYSQYLNWAGKGKNPIPSVDGWPAYMDYV
                     RQYAGNAECRQLLKNHIKKVISRTNRYSKIRYVNDPTIFSWQIGNEPRAFSDENKPLF
                     AAWLKDISAYIKSLDKNHLLTIGSEGQWGCEMDMNLFEQIHADSNIDYLTMHIWPKNW
                     SWLDVKNMPGTLQNSIDKTVEYMNNHMAVARKLSKPIVMEEFGFPRDHHEYTLKDSTS
                     LRDRYYAAVFHKLQQSAAEKDVLAGCNFWAWGGSARPNPAHVYWAKGDDYLGDPAQEE
                     QGLNSVFDTDATVKIVKNYSDRIQGKVTLVDDNATPKTLALFLNMKQNIAKGIMIAHQ
                     DDAAYGHDWYGKPGAS"
     gene            complement(1579..>2766)
                     /locus_tag="VI413_07005"
     CDS             complement(1579..>2766)
                     /locus_tag="VI413_07005"
                     /inference="COORDINATES: protein motif:HMM:NF015585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HEY6914407.1"
                     /translation="WKVVLPAMKAGGPYNLSVSGSTKVECEDVMIGEVWLCSGQSNME
                     YAFNWDSKPIDVGDEVAKSANKELRFFQLKHTYSIYPKDNSDGEWKVSSPENTPSMSV
                     AGYFFGKTINEKLKVPVGLIASYWGGTNVQSWMPNDVFTNNTELKKLAEDTKPVNWAP
                     TEPSVIYNSMLQPLVNYKIAGAIWYQGEGNTGEPQNYGKLFEGLITGWRKAFNNDFPF
                     YFVQIAPWNGYWKNSAAYLREQQEYVLSLPKTGMVTVGDLVDNIKDIHPRIKKEVGLR
                     LVNLALKDHYGVQEINPYYPRYKSFTVKKNTVNIQLITTGKLVCKSKTPANFQLAGAD
                     NQFYPAVAKVEKDGSITVSSKDVKTPVNVRYCFTNDAMPDLFDVNGLPLAPFRTDKIE
                     YRP"
BASE COUNT          738 a          647 c          524 g          857 t
ORIGIN      
        1 ccgaagctcc cggttttccg taccaatcgt ggccataagc tgcatcgtcc tgatgggcaa
       61 tcataatgcc tttggcaata ttctgcttca tattcaggaa aagtgccagc gttttgggtg
      121 tggcattatc atctaccaat gttacttttc cctgaattct atcggaataa ttctttacaa
      181 ttttcacagt agcatctgta tcaaaaaccg agtttaagcc ttgctcctct tgtgccggat
      241 cgcccagata gtcatcgcct tttgcccaat aaacatgtgc cggattagga cgagctgagc
      301 caccccatgc ccaaaagtta caaccagcca gcacatcttt ttcggcagcc gactgttgta
      361 atttgtgaaa tacagcagca taatacctat cgcgtaggga agtagagtct ttcagagtat
      421 attcgtggtg atcgcgtgga aaaccgaact cttccataac gattggtttt gataattttc
      481 gggcaacagc catgtggtta ttcatgtact cgactgtttt atctatgctg ttttgcagcg
      541 ttcccggcat atttttcaca tccaaccagc tccagttttt aggccagata tgcatggtca
      601 ggtaatcgat attcgagtca gcatgaatct gttcaaataa attcatatcc atttcgcaac
      661 cccattgccc ttcggaaccg atggtcagca agtgattttt atccaacgac ttgatataag
      721 ccgaaatatc ctttaaccac gctgcgaaca gcggtttatt ctcgtcagag aaagcacgtg
      781 gttcgttgcc aatttgccat gaaaagatag tcggatcatt cacatatctg atttttgaat
      841 accgattggt acgcgaaatc acttttttga tatgattttt aagtagttga cggcattctg
      901 cattaccagc atattgtctc acatagtcca tgtaagccgg ccaaccatct accgacggaa
      961 ttgggttttt acctttacca gcccagttga gatactgact gtaaccaccg gaccattccc
     1021 acgagttggt aaaaaagagc acagctttca tattccgttt actcatttcg gccagcaaaa
     1081 agtccaatcc atcaaaaatg gcatcgttat attgtcccgg tttaatttgc aaagttggtt
     1141 ctactttcga cgcaattccg ttttcaccat cggcaccaat caacacacgt aggttgctga
     1201 ttccattggc tttcataaaa tccagttcgc gaatcaaccg ttcacgattt ccgccttcgc
     1261 ctttgcttcc cagaatggca ccgtaccaga aattggttcc gataaaataa cacggctcag
     1321 cattcaactc aaaatgagca ttttttgtat gaacaaacga cctcatcccc tctctttgag
     1381 gagacgggag tcgtgacaaa gttgttttat tctttgaaaa accattcatt gttagtacca
     1441 gaaaaagaag aaaaacccct aacccctgaa ggaaaattag attagtattc ttttgagtat
     1501 ttttttgggt gtccattgtt tgaaatcgct gtaaaaaatt agttgtaact ttgttcccct
     1561 ttaggggtta ggggtcattt atggtctgta ttcaatctta tcagtgcgga atggagctaa
     1621 tggcaaacca tttacgtcaa acaaatcagg catagcatca ttggtgaagc aataacgcac
     1681 gtttacaggt gttttcacat ctttgcttga aacggttata gaaccgtctt tctcaacctt
     1741 agctactgcc ggatagaatt gattatcagc accagccaat tggaaatttg ccggagtttt
     1801 actcttacaa actagcttcc cggtcgttat caactgaata ttgactgtgt tcttctttac
     1861 cgtaaaactc ttataacgtg gatagtatgg atttatctcc tgaactccat aatgatcttt
     1921 caaagccaga tttaccaatc gtaaccccac ttcttttttt atccgggggt gaatatcttt
     1981 aatattgtca accaaatcgc ctaccgtcac cattccagtt ttaggtaatg aaagtacata
     2041 ttcctgttgc tcgcgcaggt aagccgcact gtttttccag tacccgttcc agggagcaat
     2101 ttgtacaaaa tagaatggaa aatcattatt aaaagctttt ctccaaccag taataagacc
     2161 ttcgaaaagt ttgccgtaat tctgaggttc tccagtattg ccttcgcctt gataccagat
     2221 agctcctgca attttatagt ttacaagtgg ttgtagcatc gaattataaa taacagaagg
     2281 ctccgtgggt gcccagttta cgggtttggt atcctcggct aactttttca gttcggtatt
     2341 atttgtaaat acatcgtttg gcatccatga ttgcacattc gttccacccc agtacgaagc
     2401 aatcaaccct accggaactt tcagcttttc attgattgtt ttaccaaaaa aatagccggc
     2461 tacactcatc gaaggtgtat tttcaggcga acttactttc cattcaccgt ctgaattatc
     2521 tttggggtaa atgctataag tatgtttcaa ttggaagaaa cgtaactctt tgttggctga
     2581 ttttgccact tcatcgccaa cgtcgattgg ttttgagtcc cagttaaagg catattccat
     2641 gttcgactgc ccggagcaca accacacttc gccgatcatc acatcttcgc attcgacctt
     2701 ggtcgaaccg ctcacgctca ggttgtatgg accgcccgcc ttcatcgccg gcagcaccac
     2761 cttcca
//
LOCUS       DATDNM010000416         5206 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1868912, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000416 DATDNM010000000
VERSION     DATDNM010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5206
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1868912"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VI413_07010"
     CDS             <1..316
                     /locus_tag="VI413_07010"
                     /inference="COORDINATES: protein motif:HMM:NF018647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046556 - alpha-L-arabinofuranosidase
                     activity [Evidence IEA];
                     GO_process: GO:0046373 - L-arabinose metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-L-arabinofuranosidase C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914408.1"
                     /translation="APAESKADSTTAFSCVRDSKSGDVTVKFVNYSKNEQKLKVDLSQ
                     FKNLSSKATQTILTGAPEAKNSFEEPTKVLPVSSDFKAGKSFIYSTKPMSLTVIRIKS
                     KK"
     gene            500..1498
                     /locus_tag="VI413_07015"
     CDS             500..1498
                     /locus_tag="VI413_07015"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6914409.1"
                     /translation="METPKTSSFIRLIILAIFVFGFANSYAQSKKQIVNGENFTDTQG
                     NTINAHGGGFLKVGDYYYWIGENRKKGVFVSCYRSKDLMNWEFRGDLLTRESHPELDK
                     ANIERPKVIYNEKTKQFVMWMHYEYGRDYSYARAAVAFSSDIEKPFTFLKSFRPFGNM
                     ARDCTLYKDEDGSAYFFAAARENYDMIMYKLTDDYLDAKEQIATLWPGGHREAPALTK
                     RGDYYFLITSGCTGWDPNQAKYAYSKSITGPWSELIDLGNQTTFNSQSTFILPIEGKK
                     TTSYLYVGDRWDGKQYFNSSYIFLPLSFKNETSLELKWTSKVTPDCKNGVLLTENE"
     gene            1621..4731
                     /locus_tag="VI413_07020"
     CDS             1621..4731
                     /locus_tag="VI413_07020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6914410.1"
                     /translation="MKIKWILGSLFLSLLTPAFAQESTTVNDWENPAVFQINREPARA
                     TFLPFADKHSAIADIFEASPWYSSLNGNWKFQWSPTPDQRPKDFYKTDFNVVNWKEIQ
                     VPSNWEMKGYGIPIYTNATYPFPKNPPYIDHSDNPVGSYRRDFNLPQTWNGRRVYLHF
                     EAGTSAMYIWVNGQKVGYTENTKSPAEFDITQFVKPGKNLVAVEVYRWSDGSYLEDQD
                     FWRISGIDRNVYLYSTSNLRVADFFARPDLDSQYKNGSLAVDVKLSNYNKTAKTGVVE
                     AALLDANGKEIFTQTLKIATPAEAKKELTFSKNVSSPNLWSNETPYLYSLVLTLKDEN
                     GKSIETVATKIGFRKVELKNSQLLVNGKRILVHGVNIHEHNPVTGHYQDIATMMLDIK
                     MMKQHNINAVRCSHYPNNVDWVKLCEKYGIYLVDEANIESHGMGYGHENMAFHAEWDG
                     AHFDRTYSLVERDKNSPAVIIWSLGNECSNGDVFFKTYKWIKERDKTRLVQFEQAGEK
                     ENTDIVCPMYPSIRYMKEYAAREKVARPFIMCEYSHAMGNSSGNFKEYWDIIRGSKNM
                     QGGFIWDWVDQGFEVTDEAGRKYWSYGGDMGSQNYTNDENFDHNGLVWPDRKPKPGLL
                     EVKRYYQDIYFTAVQPEKGLITVANELHHTNLQNYTFGYEVLKNGEVIKTGSFDVNLA
                     PESEKQVQLAMPEMPVADGVEYLLNVFAYTRYGSEVVPQGHEVAREQFNLGESKYFVK
                     AAPAKGAVKVTEDKDRIHLNAGGVYVNINKSSGLMGEYKMDDRWVFYSKPTPNFWRAP
                     TDNDFGNNSQRKSNIWRMAGENTSVKNIAVKEEDGKAVVTANIFLKDVASDYQLVYTM
                     TTDGALTVNVSYKAGANELPEIPRFGMIMSVDKAFDNFTYYGRGPWENYSDRNNASLI
                     GIYNSKVADQYVPYTRPQENGYKTDLRWLTLTDNSGKGIRIEGLQPICASALQNWPED
                     FDPGISKKYRHTNDITPNRDEVILSVDLAQRGVGGDNSWGALPHKQYRLEAKEYSYGY
                     VIKPVK"
     gene            complement(4958..>5206)
                     /locus_tag="VI413_07025"
     CDS             complement(4958..>5206)
                     /locus_tag="VI413_07025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008021668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronyl hydrolase"
                     /protein_id="HEY6914411.1"
                     /translation="MSTYIAGDVGVKYKEDAVKMLKTLSSKAYQSGKSNSSYLLHSTG
                     NWPDKSEIDASIIYADYYYIEALLRLKKLNGGKKLFEY"
BASE COUNT         1713 a         1042 c         1076 g         1375 t
ORIGIN      
        1 tgctccggct gaaagtaaag ctgactcaac aactgcgttt tcgtgtgttc gcgatagcaa
       61 atcgggtgat gtgacagtaa aatttgtaaa ctactcgaaa aacgaacaga agctgaaagt
      121 cgatttatcg cagtttaaaa atctcagttc aaaagcaaca cagaccatac tcacaggagc
      181 tccagaagct aaaaatagtt ttgaagaacc aacgaaagtg ctgccggtta gttctgattt
      241 taaagccgga aaaagcttta tttacagcac aaaaccgatg tcgctgacgg taatccggat
      301 aaaaagcaaa aagtaaaaat tccatttgaa tatatacaga aacggctaaa tcttacctaa
      361 aggtttagcc gttttgtttt ggtcattttt caccctttat tgaatgaatt cttcacctcc
      421 gatagctatt agttttttat ttttgcatta tcaaaaaagg tatataaaga aataaattac
      481 aaacgattac ttcaataaaa tggaaactcc gaaaaccagc tcattcatac gattgatcat
      541 tttagctatt ttcgtatttg gctttgctaa ttcttatgcc caatcgaaaa aacagattgt
      601 caatggtgaa aatttcaccg atacacaagg gaataccatc aatgcccatg gtggtggatt
      661 tttgaaagtt ggtgactatt attactggat aggcgaaaat cgcaaaaaag gagtttttgt
      721 ttcctgctac cgttcgaagg atttaatgaa ttgggaattc cgcggtgatt tgctaacacg
      781 cgaatctcat cctgaacttg acaaggcaaa catagaacgc ccgaaagtga tttacaacga
      841 aaaaacaaaa caatttgtta tgtggatgca ctacgaatat ggtcgtgatt atagctatgc
      901 gcgtgctgca gtggcttttt cgagtgatat tgaaaaacca tttacgtttc tgaaaagttt
      961 tcgtcctttt ggtaatatgg cccgggattg taccctctac aaagatgaag atggctccgc
     1021 ctatttcttt gctgctgcac gcgagaatta cgacatgatt atgtataaac taacagacga
     1081 ttatctggat gccaaagaac agattgcaac actttggcct ggtggacacc gcgaggctcc
     1141 cgcactgaca aaaaggggcg attactattt tcttatcact tcaggttgta ccggctggga
     1201 tccaaaccag gctaaatatg cttattccaa atccattacc ggcccatggt ctgaacttat
     1261 cgatttggga aaccaaacta cttttaattc ccaatcaacc tttatattac ccattgaagg
     1321 taaaaaaacg accagctatc tttacgtagg tgaccggtgg gatgggaagc agtattttaa
     1381 ttcaagttat attttcttac ctttgtcgtt caaaaacgaa accagccttg aattaaaatg
     1441 gacatccaaa gtaacgcctg attgcaaaaa tggagtatta ctcacagaaa acgaataatc
     1501 taaagatatc aataaaaaaa cacatacaaa atttatgaaa cgagcataaa cgcaggcgtt
     1561 cgtcaattaa gatgaaaatc tcgtatgcga gttccatgtg acaactaaaa aaaattacac
     1621 atgaaaatca aatggatttt aggcagcttg tttttaagcc tgctcactcc tgcttttgca
     1681 caagaaagca ctaccgtcaa tgattgggaa aatcccgctg tatttcagat aaaccgcgaa
     1741 ccggcacgag caacttttct gccttttgcc gacaaacatt cggcaattgc tgatattttt
     1801 gaagcatcgc cctggtatag ctcgctgaat ggcaactgga aattccaatg gtcaccaaca
     1861 ccagaccaac gtccgaaaga tttctacaaa actgatttta acgtcgtaaa ctggaaagaa
     1921 atccaggtgc catctaactg ggaaatgaaa ggttacggta ttccgattta taccaacgcc
     1981 acgtacccat ttccaaaaaa tccaccttat atagatcatt ccgataatcc cgtgggttca
     2041 taccgccgcg atttcaatct gccgcaaaca tggaacggac gtcgcgtgta cctgcatttt
     2101 gaagcaggaa cttcggccat gtacatttgg gtgaatggac aaaaagtggg atataccgaa
     2161 aacaccaaaa gccctgccga attcgacatt acgcaatttg taaaaccggg aaaaaacctt
     2221 gttgcagttg aagtatatcg ctggagtgat ggctcttacc tcgaagatca ggatttctgg
     2281 cgcatttctg gtattgaccg caacgtatat ctttacagta catccaattt acgcgttgcc
     2341 gatttctttg cccgtccgga tctggatagc caatataaaa acggttcact ggctgtagat
     2401 gttaagctaa gcaactacaa caaaactgct aaaaccggag tagtagaagc tgctttactt
     2461 gatgccaacg gaaaagagat tttcacccaa accctgaaaa ttgcaactcc tgccgaggca
     2521 aaaaaagagc ttacattcag taaaaatgtt tcgtctccaa acttgtggag caacgaaact
     2581 ccataccttt attcattggt actgacatta aaagatgaaa atggcaagtc tatcgaaacg
     2641 gttgcaacta aaatcggttt ccgcaaggtg gaactgaaaa acagccaatt gctggtaaat
     2701 ggcaaacgaa tcttggtgca tggtgtaaat atacacgaac acaatccggt aacaggacat
     2761 tatcaggata tcgccactat gatgctggac ataaaaatga tgaagcaaca caatatcaat
     2821 gcggttcgtt gcagtcatta tccaaacaat gtggactggg tgaaactatg tgagaaatat
     2881 ggtatttatc tggtagacga ggctaacatc gaaagccatg gcatgggata tggacatgaa
     2941 aatatggctt ttcatgcaga atgggatggc gctcattttg accgcactta cagcctcgta
     3001 gaacgcgaca aaaactctcc ggcggtaatt atatggtcgt tgggtaacga gtgtagcaat
     3061 ggtgatgtgt ttttcaaaac ctataaatgg attaaggaac gtgacaaaac acgtttggtt
     3121 caatttgagc aggccggcga aaaagaaaat acagatatag tttgtcctat gtacccaagc
     3181 attcggtata tgaaagagta tgcagcacgc gaaaaagtag cgcgtccgtt tattatgtgc
     3241 gaatactcgc atgcgatggg taacagttct ggaaacttca aagaatactg ggatattatc
     3301 cgtggaagca aaaatatgca gggcggtttc atttgggact gggtagacca gggatttgaa
     3361 gtaaccgacg aggcaggacg taaatactgg tcatacggtg gtgacatggg aagccaaaac
     3421 tacactaacg atgagaactt tgaccataac ggactggtat ggcccgaccg caaaccaaaa
     3481 ccggggttac tggaagtaaa aagatattat caggatattt actttacagc agtacaacct
     3541 gaaaaaggat tgattacagt agcaaacgaa ctacaccaca ccaacttgca gaactacaca
     3601 tttggatacg aagtgttgaa aaacggtgaa gtgattaaaa ccggttcttt tgatgtgaat
     3661 ctggctccgg aatcagaaaa acaagtacaa ctggctatgc cggaaatgcc tgttgccgat
     3721 ggtgttgaat atctgttgaa cgtatttgcc tatacccgtt acggttcaga agtggttccg
     3781 caagggcatg aagtggcacg ggagcagttc aacctgggcg aaagtaaata ctttgtaaaa
     3841 gcagctccgg ccaaaggcgc tgtgaaagtt accgaagaca aagaccgtat tcatctgaat
     3901 gctggcggag tgtatgtaaa tatcaacaaa tcgtccggat taatgggtga atataaaatg
     3961 gacgaccgct gggttttcta ctcaaaaccg acgccaaact tctggcgtgc cccgacagat
     4021 aatgactttg gaaataattc gcaacgtaaa tccaatatct ggcgcatggc aggcgaaaac
     4081 acttcggtaa aaaacattgc cgtgaaagaa gaagacggaa aagcagtagt tactgccaat
     4141 atcttcctga aagatgtagc ttcggattac caacttgttt ataccatgac taccgacggt
     4201 gcactgaccg taaacgtatc gtataaagcc ggtgccaacg aattgcccga aatacctcgc
     4261 tttggtatga ttatgagtgt cgataaagcc tttgacaact tcacatatta tggccgcgga
     4321 ccatgggaaa attattccga ccgcaacaat gcatcgctta ttggcattta caacagcaaa
     4381 gttgccgacc aatatgtacc ttatacacgt ccgcaagaaa atgggtataa aaccgacttg
     4441 cgttggttga cgcttaccga taacagcgga aaaggaatac gtattgaagg attacaacca
     4501 atctgcgcca gcgcattgca aaactggccc gaagattttg atccgggaat ttcaaagaaa
     4561 tatcgtcaca ccaacgacat tacaccaaac cgggatgagg ttatcctttc ggtggatctt
     4621 gcacaacgcg gtgtgggtgg cgacaatagt tggggcgcat taccacataa acaataccgt
     4681 ttggaagcaa aagagtacag ttacggttat gtgattaaac cggtgaaata aatacaggaa
     4741 ctttccataa agcaaaaaaa tccttataag catagcctta taaggatttt ttgctttaaa
     4801 attgaatatc agacagatga atttaaattc gttttataaa ataactatct atacttttca
     4861 aaataaaatt actataaagt attagatata aaaagcgaag ctgattcaat aaaattgaaa
     4921 cagcttcgct catgttataa cagataataa tacgctctta atactcaaaa agttttttgc
     4981 ctccattcag ttttttcaac cggagcaacg cctcaatata atagtaatcg gcataaataa
     5041 ttgatgcatc aatctctgac ttatcaggcc agttaccggt tgagtgaagc aggtatgatg
     5101 aattgctttt cccgctctgg taagcttttg aactaagcgt tttgagcatt tttacagcat
     5161 cttccttata cttcacacct acatcaccag ctatataagt tgacat
//
LOCUS       DATDNM010000417         3206 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1869101, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000417 DATDNM010000000
VERSION     DATDNM010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3206
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1869101"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..1621)
                     /locus_tag="VI413_07030"
     CDS             complement(47..1621)
                     /locus_tag="VI413_07030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HEY6914412.1"
                     /translation="MNSELVVDVKPSEISIALLEDKRLVELNQEGREEQFAVGNIYLG
                     RVKKIMPGLNAAFVDVGYDKDAFLHYLDLGFNFNTLTQFTTQALSDRKKAPAIQKIKQ
                     QPEIEKNGSINDILKPGQDILVQVTKEPISTKGPRLTAEISIAGRFLVLIPFADKVSV
                     SQKIKTEEERQRLKQLIQSIKPKGFGVIVRTVAEEKKVAELDNELKILVKRWEEAIAK
                     TQQTKGVSLILEELGRTVGIIRDLFSPSFKHIHINDPAVYTEVRDYVELIAPDRKDIV
                     KLYQEEAPIYDSFGITKQIKSAFGKTVSFKNGAYLIIEHTEALHVVDVNSGNRSKAGN
                     GQEANALDVNMAAADEIARQLRLRDMGGIIVVDFIDMHETENRQKLFDRMRENMANDR
                     AKHNILPLSKFGLLQLTRQRVRPVIHIDIEETCPTCFGKGRTQPSILFTDQLESKIDY
                     LVNKLMIKEFTLQVHPYVDAYISKGLISMKWQWRRKYGKGCKVVAAQKLGFLQYKFSD
                     NKGNEIDLQEEIEKIS"
     gene            complement(1859..2131)
                     /locus_tag="VI413_07035"
     CDS             complement(1859..2131)
                     /locus_tag="VI413_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005636204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEY6914413.1"
                     /translation="MTKADIVNEIAKNTGIDKVTVLTTVEAFMETVKDSLSKNENVYL
                     RGFGSFVIKERAEKTARNISKNTTIIIPAHNIPSFKPAKTFVSVVK"
     gene            complement(2271..>3206)
                     /locus_tag="VI413_07040"
     CDS             complement(2271..>3206)
                     /locus_tag="VI413_07040"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY6914414.1"
                     /translation="IIENGKFTFKGVADTAKMADLTYVYPSDNKVRQAFVLENGKLTA
                     NVDTTGFMIIKGTDQNDLLQTYQDEKNSFNKKADAFYKANSDTVKTSEQKLAFAQKEK
                     ELANEESAIDKKFATEHVNSLVGTHVFVNSFYAMSIGEKEAIIKLMNADTKNVKRIQE
                     IIADVETEKKVAVGSRFADIKLPSLSGDSIALSGLVGKTDFVLIDFWASWCGPCMQFL
                     PELKAFYAKHKGVRLQILGVSLDDDKEAWVGTIASKQMSWMQVSDLKGWKCEGSKLYA
                     VNSIPSTVLINKSGKIVGRNLSIPEMEKLLLEKSR"
BASE COUNT          869 a          668 c          520 g         1149 t
ORIGIN      
        1 aaaaagcagg ctaaccattt cggttagcct gcttttgaat ttatagttac gatatttttt
       61 ctatttcttc ttgtaggtca atttcatttc ccttattgtc ggagaatttg tattgcagga
      121 agcccaactt ctgagcagcc actactttac aaccttttcc atattttcgt ctccattgcc
      181 acttcatcga gattaaacct ttagagatat aggcatctac gtaggggtga acctgcaatg
      241 tgaactcttt aatcattaat ttatttacga gataatctat tttactttcc aactgatcgg
      301 taaataaaat tgagggctgc gtgcgcccct ttccaaaaca cgtcggacaa gtttcttcta
      361 tatcaatatg aatcaccgga cgaacacgtt gtcgtgtcaa ctgcaacaat ccgaatttac
      421 tcaaaggcag gatattgtgc ttggctctgt cattggccat attttcacgc attctgtcaa
      481 agagtttctg acgattttca gtttcgtgca tatcaataaa atctaccacg ataatacctc
      541 ccatatcgcg caagcgaagt tgacgggcta tttcgtcggc agctgccata ttcacatcaa
      601 gagcattagc ttcttgtccg ttccccgctt tcgaacgatt accactgtta acgtcgacaa
      661 catgcagggc ttcggtgtgt tctataatca ggtatgcgcc atttttgaac gatacggttt
      721 taccaaaggc tgatttaatt tgtttggtta taccaaagct atcgtaaatc ggagcttctt
      781 cctgatatag tttcacaata tctttacgat cgggggcaat cagttctacg taatcacgca
      841 cttcggtata caccgccgga tcgttgatat gaatatgttt aaaactcggg ctgaataaat
      901 ctctaattat tcctaccgta cgacctaatt cttctaaaat aagcgaaact cctttagttt
      961 gttgtgtttt ggcgatagct tcttcccagc gttttaccaa aattttcaac tcattatcga
     1021 gttctgctac ttttttctct tcagcaactg ttcttacaat aactccaaat cccttgggtt
     1081 taatgctctg aatcaattgt ttgagacgtt gacgttcttc ttccgtttta atcttttgcg
     1141 aaaccgacac tttatcggca aatggaatca gaactaaaaa tcgccctgca atagaaattt
     1201 ctgccgtcaa tcgtggacct ttggttgaga taggctcttt ggtcacttgt accaaaatat
     1261 cctgtcccgg ctttaaaatg tcattgattg aaccgttttt ttcaatttcc ggttgctgtt
     1321 tgatcttttg aatagcaggc gcctttttac ggtcgctcaa cgcctgcgtt gtaaattgtg
     1381 taagggtgtt gaaattgaaa cctaaatcaa gataatgtag aaaagcgtct ttgtcgtaac
     1441 caacatccac aaaggctgca ttcagaccgg gcattatttt tttcaccctc cccaagtata
     1501 tatttcccac ggcgaactgt tcttcacgtc cctcctggtt aagttctaca aggcgtttat
     1561 cttcgagcag cgcaatagaa atttcagatg gttttacatc tactactagt tcgctattca
     1621 ctttttacta tttatttgat tgggttgttt ttacatataa aaaaaacaaa cttaaagcca
     1681 agatgttcgc ttataagttt gttttcttgg actttataat taaagaccat taagacttat
     1741 ttctttttat gtctattctt tctcagtctt tttttgcgct tgtgagtcga cattttatgt
     1801 cgttttcttt ttttaccgct tggcatctta ttttgtatta gttagtatgt gaaaaaaatt
     1861 attttactac gctcacgaaa gtctttgcag gtttgaaaga aggaatgttg tgagctggaa
     1921 tgataatagt tgtatttttt gagatgttac gagcagtttt ctcagcacgt tctttgataa
     1981 cgaagctacc aaaacctctt aaatatacgt tttcattttt agagagcgaa tcttttacag
     2041 tttccataaa agcctcaaca gtagtcaata cagtcacttt atcaattcct gtatttttag
     2101 caatttcgtt tacgatgtct gccttagtca tttcagtaat tattttattt gttagttaat
     2161 aaattgatta ttccttattt ttcaaacgga ctgcaaatat attgctttta ttctgattaa
     2221 aaaacaattg cgctcttttt tttctcttaa aagttgattt atctgttttt tcatctgctt
     2281 ttttcgagca ataatttttc catttcaggg atactcaaat ttcgtccgac aatctttcca
     2341 cttttattaa tcaaaactgt actcggaatt gagttgacag catacagttt tgaaccttca
     2401 catttccagc cctttaaatc agacacttgc atccagctca tttgtttcga agcaattgta
     2461 ccaacccagg cttctttatc atcatccaga gaaactccca gaatttgcag ccgaacacct
     2521 ttgtgttttg cataaaacgc ctttagttcg ggcaagaatt gcatgcacgg accacaccag
     2581 gaagcccaaa aatcaatcag tacaaagtct gtttttccca ctaaaccgga taaagcgata
     2641 gaatcaccgc tcaatgatgg cagttttata tcagcaaacc gacttccaac agccactttc
     2701 ttttcggttt cgacatcggc aattatttcc tgaatacgct ttacattttt cgtatcggca
     2761 ttcatcaact taataatagc ctctttctct ccaatcgaca ttgcataaaa ggagttaaca
     2821 aatacatgcg taccaacgag tgaattcaca tgttctgttg caaatttttt atcaatagcc
     2881 gattcttcat tagcaagttc cttttctttt tgggcaaaag ccaatttttg ttcgctggtt
     2941 tttactgtat cactgtttgc tttataaaac gcgtccgctt tcttattaaa ggaattcttt
     3001 tcatcctgat atgtttgcaa caaatcattt tgatcagttc cttttattat catgaaacct
     3061 gtagtatcaa cattagctgt cagttttcca ttttcaagca caaaagcctg acgaacctta
     3121 ttatcggatg gataaacata agttagatcc gccatttttg cagtatcagc tacgccttta
     3181 aaagtaaatt taccattttc aataat
//
LOCUS       DATDNM010000418         2308 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1442783, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000418 DATDNM010000000
VERSION     DATDNM010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1442783"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1228)
                     /locus_tag="VI413_07045"
     CDS             complement(<1..1228)
                     /locus_tag="VI413_07045"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6914415.1"
                     /translation="MKKHFTYNIFFALLIVVISGCSVKKNTWTTRAYQATNTRFNVYF
                     NGYVSYNEGLKNILKANKEDYSTVIPMYPISRHSNASAATSDMDRTIEKCRKAIKLHS
                     IKVKPVKNYKKINSPEYKHFYSQEEFNPAMKEAWLLLAKAEFHKGDFLGSVGTFSYIA
                     RHYSTDKDVIAVCQLWIARSYGEMGWIYEAEQVLSKLEQDNLKHSNIGLFASVNADLL
                     LKKRQYKEAIPFLELALSKEDDKDMQQRFGYLLAQLYHKTNDDKAAYDAYSKVIKLNP
                     PYEMDFNARISRAQLNTENVYKVRKELRTMLKNKNNKEYRDQLYYVLGNTYLSHGDTL
                     QAIDNYKLSVDTSSRKGIDKAVTLVTLGDLYYKKREYVLAQPCYDEAAKIITNEHDDY
                     ARVTRRAETLSELVVQN"
     gene            complement(1483..>2308)
                     /locus_tag="VI413_07050"
     CDS             complement(1483..>2308)
                     /locus_tag="VI413_07050"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HEY6914416.1"
                     /translation="VGISCCVTVLALIFLLFSNGNSNNIDSIKLMQLVQSVGMFVLPP
                     FIFAYFCSNRPLVFLHFDRKTNWIQIFLVVFFMILIIPGINLLTSLNQQLVLPKVFDG
                     VEAWMKSSEEQMAKLTEQLLNVHTLTSLVFNVLLVAMIPALGEELFFRGAVQGIFRQK
                     MNVKVAIWLTAILFSAIHMQFYGFIPRMLLGAFFGYLLFWSENIWMPIVAHFTNNGIA
                     IIFYYLKYNGYKVQDIDTIGTGSSLWLGSLSIAVGIFGFFLLRNRIRKSVDIAVGS"
BASE COUNT          764 a          465 c          379 g          700 t
ORIGIN      
        1 cattttgaac cactaactcg ctcagcgttt ctgcgcggcg tgttacacgg gcataatcat
       61 catgttcgtt ggtaataatt tttgcagctt cgtcataaca tggttgtgcc aacacatatt
      121 cgcgtttttt atagtataaa tcacctaatg ttaccaaagt aactgcctta tcaattcctt
      181 tccgtgagct agtatcgacc gaaagtttat aattatcaat cgcttgcaaa gtatcaccat
      241 gcgacagata agtgttacct agcacgtaat acagttgatc acgatattct ttattattct
      301 tgtttttcaa catggtacga agttctttgc gaaccttgta cacgttttct gtatttaatt
      361 gggcgcgact tatgcgggcg ttaaaatcca tttcataagg cggattcagc ttgataactt
      421 ttgaataagc atcgtaagct gctttatcgt catttgtttt atgataaagc tgggccagca
      481 aatatccaaa tcgctgctgc atatctttat catcttcttt ggataaagcc agttcgagaa
      541 atggaattgc ttctttatac tgtcttttct ttaaaagcaa atcggcatta actgaagcaa
      601 aaaggcctat attggaatgt tttaaattat cttgctccag tttggaaagt acctgttcag
      661 cttcgtaaat ccaacccatt tcgccataag accgtgcaat ccataactga cacacagcaa
      721 taacatcttt atctgtactg taatgacgag caatatatga aaatgtgccg acggagccca
      781 gaaaatcacc tttgtggaat tcagctttcg ccagaagtaa ccaagcttct ttcatagccg
      841 gattaaactc ttcctgacta taaaaatgct tatattccgg agaattaatc ttcttataat
      901 tcttcactgg tttaactttt attgaatgta atttaatggc tttacggcat ttttcaattg
      961 tccggtccat atccgacgtg gcggcagaag cattggaatg ccggctaatc ggatacatag
     1021 gaataactgt cgaataatct tctttgttgg ccttcagaat atttttcaac ccttcgttat
     1081 aactcacata tccattaaaa tacacgttaa aacgcgtatt ggtagcctga tatgctcttg
     1141 tagtccaggt attttttttg acagaacagc cactaatcac tacaatcagc agagcaaaaa
     1201 agatgttata tgtgaaatgt tttttcaaat tattctctat tgaaaaaata agcataaatg
     1261 cagctaattt taagtaaacc ggactatttt aaagactgct ttccatctat ttaaagaaat
     1321 aacctaacag tctgaattaa aaacttagaa aagtgctttc tattgtcttt taactcacaa
     1381 aaatacgcat tttgtagcat taattgataa cactacaaaa ataatcatta tgaaacttag
     1441 tgaaaaatag ctaataacgc aaaacgcggc aagtagaaaa gtctaagacc caaccgcaat
     1501 gtcaaccgac ttccgaatcc ggtttctcag taggaaaaat ccaaaaattc caactgcaat
     1561 gctaagactt ccaagccata aagaactacc ggtcccaatg gtgtcaatgt cctgcacttt
     1621 atacccattg tatttcagat aatagaaaat aattgcaatt ccattgttcg taaaatgagc
     1681 tacgataggc atccatatat tttcgctcca aaatagcaag taaccaaaaa atgcacccaa
     1741 aagcatacgt ggaataaaac cgtaaaattg catatgtatt gcactaaaaa gaatggcagt
     1801 taaccagata gcaactttca cattcatttt ttgtcgaaag atgccctgaa cagcgcccct
     1861 aaaaaaaagc tcttcaccca gtgcaggaat catagcaacc aagagcacat taaaaaccag
     1921 agatgtgaga gtatgaacat tcagtaattg ctctgtcagt tttgccattt gctcttccga
     1981 cgatttcatc caggcttcta ctccgtcgaa cactttaggg agtacaagtt gctgatttag
     2041 gctggtaagc aaattgattc cgggaatgat caatatcata aaaaagacta ccagaaaaat
     2101 ctgaatccaa tttgtttttc tgtcaaagtg taaaaaaacg agtggtctgt tgctgcagaa
     2161 atatgcaaaa ataaatggcg gtaacacaaa cattcccact gactgcacta actgcatcaa
     2221 ctttatagaa tctatgttat tagaattccc gtttgaaaac aacaaaaaaa taagtgccag
     2281 aactgtcaca caacatgaaa ttccaaca
//
LOCUS       DATDNM010000419         2100 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_481062, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000419 DATDNM010000000
VERSION     DATDNM010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481062"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..830
                     /locus_tag="VI413_07055"
     CDS             120..830
                     /locus_tag="VI413_07055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914417.1"
                     /translation="MKKPVSSIFSTFILPFIFCTAMGVLEAVVVIYLRKIYYPTGFEF
                     PIKFLSPDLLLTEWIREVATIVMLVVLGIMAGKDNLQRFLYFLFCFAIWDLTYYITLK
                     AFLNWPASLLTWDILFLIPVPWMSPVLAPVICSITMIFFAVSFVWLKKNYSSFKIKLY
                     EWAFILLGATFIFISFILDYFTLLAQSNFSLSETNNMLSLYVPMSFNWWLFGIGEILI
                     LYGIGSVIFRTCRKSVTP"
     gene            complement(892..1200)
                     /locus_tag="VI413_07060"
     CDS             complement(892..1200)
                     /locus_tag="VI413_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3467 domain-containing protein"
                     /protein_id="HEY6914418.1"
                     /translation="MENQDGQLNIELSAEIAEGVYSNLAIISHSTSEFVVDFIRIMPG
                     TPKANVKSRIILTPEHAKRLLFALQENIAKFEQQNGKIKIADNGFVPPVPMGFGGGEA
                     "
     gene            1499..1939
                     /locus_tag="VI413_07065"
     CDS             1499..1939
                     /locus_tag="VI413_07065"
                     /inference="COORDINATES: protein motif:HMM:NF021361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HEY6914419.1"
                     /translation="MKKVISLFTFAFVFSSLSFCQDNKEYSNALKRMFELSGSEESYK
                     VVIKQVVYMQKSKNPYDIDWTEIEKELLKTSMSDLVEMLVPIYQKYMTIDDIKEMTKF
                     YQTPVGQKYAKNTPLIMQESMQVGQQWGQKLGKDIEEKIKKKNQ"
     gene            1958..>2100
                     /locus_tag="VI413_07070"
     CDS             1958..>2100
                     /locus_tag="VI413_07070"
                     /inference="COORDINATES: protein motif:HMM:NF014609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HEY6914420.1"
                     /translation="MAKISIYQVDAFTDELFKGNPAAVCMLEYWLDDTQMQLIAAENN
                     LAET"
BASE COUNT          702 a          371 c          366 g          661 t
ORIGIN      
        1 caatcaataa aaatatcaga atatgcagtt aaaactcatt ttagttccag tcagagtcgt
       61 acaaatgagc tacttatttg ttttaataaa aagctcataa aaagtaataa tgctgccata
      121 tgaaaaagcc agtcagctca atcttcagca cttttatttt accttttatc ttctgcacgg
      181 ctatgggcgt gctggaagca gttgttgtta tttatctccg gaaaatttat tacccgaccg
      241 gatttgaatt tccgataaaa ttcctttcgc cggacctgct gctcacagaa tggattcgcg
      301 aagttgccac cattgtaatg ctagtagtgc ttggaattat ggccggcaag gataatttgc
      361 aacgtttctt gtacttcctt ttctgttttg ccatttggga tttgacttat tacattacat
      421 taaaggcatt tctgaactgg cccgcgtcat tactgacctg ggatatttta ttcctgattc
      481 ctgtgccctg gatgagtccg gtattggcac cggttatctg ctcgataacc atgatatttt
      541 tcgctgttag ctttgtttgg ctgaaaaaaa attatagttc attcaaaata aaattatacg
      601 agtgggcatt tatcctgctg ggagcgactt ttatattcat ttctttcatt ctggactatt
      661 tcacacttct ggcacaaagc aatttctcat tatccgaaac caataacatg ctatcattat
      721 atgtgccaat gagcttcaac tggtggcttt tcggtattgg agaaatactg attttatatg
      781 gaatcggttc tgtaattttc aggacatgca ggaaatctgt taccccgtaa aaaatgaaag
      841 acgacagaat tgcttcgatc gtcctttact attcaattta gttggttggc attaagcctc
      901 accaccgcca aaacccattg gaacgggtgg aacaaagcca ttatcggcaa ttttgatttt
      961 accgttttgt tgctcaaact tagctatgtt ttcctgcaaa gcaaaaagta accgtttggc
     1021 gtgttcggga gtaagaataa tgcgcgattt cacattagcc ttgggtgtac ccggcatgat
     1081 acgaataaaa tcgacaacaa attcggaagt tgaatgagag ataatagcca gattggagta
     1141 aactccttca gcaatctcgg ctgaaagttc aatgtttaat tgaccgtcct gattttccat
     1201 gttttatttc tttgataagg acaagccttg acttgccatt gtttaaatgt gtatacttat
     1261 tgaatacaaa gatacatttt tatcattaga aattaaaatt attaagctct atctgacaaa
     1321 agggaattac acattcaata attattggtt taatagaatg tacaatgcaa tcacatttta
     1381 aatcaaaaat tattctgaaa attaatattt ttcagcaaat aaattgcaca cactaaaaca
     1441 atcaactatt tttacataaa catatttcaa taataaaaaa acttctaaaa aaacaactat
     1501 gaaaaaagta atttctcttt ttacatttgc ctttgtcttt agttcattat ctttttgtca
     1561 ggacaacaaa gagtatagca atgcattaaa gagaatgttt gaattatcag gttccgaaga
     1621 atcatacaaa gtagtaatca agcaggtggt atacatgcaa aaaagcaaaa acccgtatga
     1681 catcgactgg actgaaattg aaaaagaact tctaaaaacc tccatgagcg atttggtgga
     1741 aatgctggtt cctatttacc aaaaatatat gactatcgat gatattaaag aaatgactaa
     1801 attttatcag actcccgttg gacaaaaata tgctaaaaac acaccactga ttatgcagga
     1861 atcaatgcaa gtagggcaac aatgggggca aaaattaggt aaagacattg aagaaaaaat
     1921 caaaaagaaa aatcaataat ttattggtcc taacaccatg gcaaaaatat caatatatca
     1981 ggtcgacgct tttacagatg aattatttaa aggaaatccg gcagcagtct gtatgttaga
     2041 atattggttg gacgacacac aaatgcaact gattgctgca gaaaacaacc tggctgaaac
//
LOCUS       DATDNM010000420         2509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_694159, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000420 DATDNM010000000
VERSION     DATDNM010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_694159"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(91..993)
                     /locus_tag="VI413_07075"
     CDS             complement(91..993)
                     /locus_tag="VI413_07075"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEY6914421.1"
                     /translation="MRNKPKPAPAPKETKLKVTEPTELMTFLLAKMGGMSRNSIKSLL
                     AHRQIMVNNKVTTQFNLPLQPNDLVAVVSGRGNVELNHPKLRIIFEDQYLIVVEKKEG
                     LLTVSTGNSDETTAFSILKTHVKKSSPQNRIYVVHRLDRETSGVIMFAKTKEVQLILQ
                     ENWHRIVTRRIYVALVEGKMEKEQDTIVTWLTENEKSLKIHSSDTDNGGQQAITHYRC
                     VKSNDNYSLLEIELETGRKNQIRVHMQGIGHPIVGDKKYGAGISPIARLGLHARLLAF
                     YHPITTEVVSFETPVPRNFLSIFH"
     gene            complement(1063..>2509)
                     /locus_tag="VI413_07080"
     CDS             complement(1063..>2509)
                     /locus_tag="VI413_07080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY6914422.1"
                     /translation="TKKSIDARSFQPKVNLTVEVYWDEPAPVREKPVFEYQSVEGKDP
                     VLIIGAGPAGLFAALKLIESGLRPIILERGKNAHDRKVDIAQLNRNKGIDADSNYCFG
                     EGGAGTFSDGKLYTRSKKKGNTERVFEIFHYHGAAEEILYDAHPHIGSDKLPIVIENI
                     SKTITSCGGEIHFEQKLTEILIENNQVIGCKTADGSVFEAKSLILATGHSAHDIYEML
                     HNQGVALEPKGFAMGVRVEHPQAMIDSIQYHCKERGSYLPAASYNLVDQVNERGVYSF
                     CMCPGGHIVPAGSGLNEIVVNGMSASQRNSPFANSGIVVEIRPEDIPAEFQEYGVLAG
                     LKFQQYVENLAYKNNGGLGQVAPAQRLADFVKGRLSADLPECSYLPGLISSPMHFWLP
                     EHISSRLREGFKKFDRKMRGYLTNEAVVVGVESRSSSAVRIPRDAATGQHPVINGLFP
                     AGEGSGYSGGITSSAIDGENAAIAVANWLNR"
BASE COUNT          669 a          593 c          494 g          753 t
ORIGIN      
        1 cccttcacga gtaattcgtg aagggatttt tttgttttaa agaattttgc aaaccacttt
       61 tcaagtcccc tttagaggat taggggtttc tcaatgaaaa atactcaaaa agtttcttgg
      121 cacaggtgtt tcgaagctta ccacctcagt tgttatcgga tgataaaatg cgagcaaacg
      181 tgcgtgtaat cccaatctgg cgataggact gattcctgca ccgtattttt tatcacccac
      241 aataggatgg ccgattccct gcatgtgaac gcgaatctga tttttacgtc ctgtctctaa
      301 ttcaatctca agcagggaat agttgtcgtt cgacttcacg caacggtaat gagttatagc
      361 ctgctggcct ccattatcgg tatcgctcga atgaattttc aatgatttct cattttcagt
      421 gagccatgta actatagtat cctgttcttt ttccattttg ccttcgacca atgccacata
      481 aatacggcgg gtaacaatgc ggtgccagtt ttcctgcaat atcagttgca cttccttggt
      541 tttggcaaac attatcacgc ccgaagtttc tctatcaaga cgatgaacca cataaatccg
      601 gttctgtgga gagctttttt tcacgtgcgt tttcagaata gaaaaagcag tagtctcatc
      661 ggagtttccg gtactcacag tcaacaaacc ttctttcttt tcgaccacaa tcaagtattg
      721 gtcttcgaaa atgatgcgta actttgggtg attaagctca acattaccac gcccgcttac
      781 tacagctacc agatcatttg gttgaagcgg caggttaaat tgcgtagtta ccttattatt
      841 caccattatc tgacggtgag ccaatagcga ttttatcgaa ttgcggctca tgccacccat
      901 tttagctaat aaaaaagtca tcagttctgt tggttctgtt acttttaatt tggtttcttt
      961 gggtgcagga gctggttttg gtttatttct catttttata tttttcggaa gaatggaatt
     1021 ctaattcctt cattatttaa aatttcattt caaatcaatt ggtcatctat tcagccaatt
     1081 agcaacggca atggcagcat tttctccatc aatagctgag gaagttattc caccggagta
     1141 accggaccct tcaccagccg gaaaaagtcc attgattaca ggatgttgtc ctgttgccgc
     1201 atcacgtgga atgcgaactg ccgacgatga ccgggactcc actcctacca ccactgcttc
     1261 gttggtcaga taaccacgca ttttgcggtc aaatttttta aatccttcgc gtaacctaga
     1321 cgagatatgt tcaggtaacc aaaagtgcat aggcgaagat atcaagcccg gtaaatagga
     1381 acattcaggc aaatcagctg aaaggcgtcc ttttacaaaa tcggcaaggc gctgagctgg
     1441 agcaacctgt cccagaccac cattattttt ataagctaaa ttctcaacat attgctgaaa
     1501 tttcaatccg gcaagtacgc catactcctg aaattcagca ggaatatcct ccggacgtat
     1561 ttccaccaca atacctgaat tggcaaaagg cgaatttcgt tgcgatgccg acatgccatt
     1621 taccactatt tcgttcaatc cgctacctgc cggcacaata tgtccgccgg gacacatgca
     1681 gaaagaatac accccgcgct cattcacctg atccaccaga ttataactgg cagcaggcaa
     1741 gtatgatcct cgctctttac aatggtactg aatgctgtcg atcatcgctt gtggatgttc
     1801 aacccgcact cccatggcaa aacctttcgg ttcgagagct accccctgat tatgaagcat
     1861 ttcataaata tcatgagcag aatgtccggt agcaagaatc aacgattttg cttcaaaaac
     1921 acttccgtca gccgttttac atccaattac ctgattattt tcaatcagta tttcagtcag
     1981 cttttgttca aaatgaattt caccgccaca ggacgtaatg gttttgctga tattttcaat
     2041 gacaatgggt agtttatccg aacctatatg tggatgggca tcgtacaaaa tttcttcggc
     2101 agctccatga taatggaata tttcgaaaac acgctccgta ttgcctttct ttttcgagcg
     2161 ggtatagagt tttccgtcgg agaaagtccc cgctcctccc tcaccaaagc agtaattcga
     2221 atcggcatct atgcctttat tacggttgag ttgggcaata tcaacttttc ggtcgtgggc
     2281 atttttgcca cgctcgagaa taatcggcct gagtccggat tctatgagtt taagagccgc
     2341 aaaaagcccg gcaggtcctg caccaataat caacacaggg tctttaccct ctacagattg
     2401 atattcaaac acaggtttct cccgtaccgg agccggttcg tcccaataca cttccacagt
     2461 caggttcact ttcggttgaa acgaacgagc atcgatagat ttcttggtt
//
LOCUS       DATDNM010000421         9391 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2084897, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000421 DATDNM010000000
VERSION     DATDNM010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 9391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9391
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2084897"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            264..1142
                     /locus_tag="VI413_07085"
     CDS             264..1142
                     /locus_tag="VI413_07085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914423.1"
                     /translation="MNRFISSFPVLFFAILFSVIFFSCKGGSEPEDNSAAYISEVFEY
                     VYGPGQHAKIAKPTDASNFIGEPKADKWVYLGGFGGYVIAGFNHDVVNGTGEDFEVFA
                     LQGASPEPAVVYVMSDTNGDGKPNETWYELKGNQFENSKRNYWVRYSKAVSDTANITW
                     LDSEGSRGELKCGFGATNSSAWWWTATTADSITLKGTRLPNAYDDNSANGTQYWVVPH
                     DRFIWGYAENVYGTDYEKTVGGNKLDISNAIDSLGQAVSLPHIRFIKVQTGVLQQAGW
                     TNEVSSEVRGAKDLRK"
     gene            1282..1638
                     /locus_tag="VI413_07090"
     CDS             1282..1638
                     /locus_tag="VI413_07090"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006841749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070497 -
                     6-carboxy-5,6,7,8-tetrahydropterin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEY6914424.1"
                     /translation="MYIISKEFHFSASHILNGLKDDHPCKRLHGHNYIVTFYFKSEVL
                     NEVGFVIDYRDLDPIKKYLDDVFDHRHLNDIMPGVNPTAENIAKFLHDTFKTQFPVLF
                     KVEVCETPKTKAIYEA"
     gene            1628..2224
                     /locus_tag="VI413_07095"
     CDS             1628..2224
                     /locus_tag="VI413_07095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018360400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEY6914425.1"
                     /translation="MKLKLKVVEIFNSIQGEGANVGRSATFIRLSNCNKNCSFCDTDW
                     DKGVEMTIEEVLAEVQKYSSNMIIWTGGEPTLQLTNEILSHFENYFQAIETNGTNPVP
                     AEIDYISCSPKVEAEILKSNFRSVDEFRFPVAVGDEIPSIDDLPRASNYFLSPIFVGE
                     VKKCLEINRKNLDYCLSVIAREPRWRLSVQLHKLLNVQ"
     gene            complement(2227..2787)
                     /locus_tag="VI413_07100"
     CDS             complement(2227..2787)
                     /locus_tag="VI413_07100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEY6914426.1"
                     /translation="MIENKLFERIDFSDKKFPCEIYENCKFVNCNFYKSNLVDVTFRE
                     CTFEDCDFSLASLKNTALNDIHFTGCKLVGVQFDECNPFLFSVDFESCMLKLAVFYKM
                     KLKKTRFKNSNLQETDFTEADLTSATLDNCDLQRATFHRSIIEKADFRTSFNYSIDPE
                     ANRITKARFSRMGIAGLLDKYRIEIE"
     gene            complement(2912..3523)
                     /locus_tag="VI413_07105"
     CDS             complement(2912..3523)
                     /locus_tag="VI413_07105"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubrerythrin family protein"
                     /protein_id="HEY6914427.1"
                     /translation="MKKSILFIAAVALIVFVGCQPKPVKTIENLKAGIKGETTASAKY
                     KAFADKAREEGLDTVAKLFDAASKSEAIHAANHSKVLEALGAKMEEFKPEFEVKTTAE
                     NLQAAIDGESYEVVSMYPEFIAAAKEEKVDKAIKSFTWAIDTEKKHKEFYAKALAAVK
                     LNNESTLSFEYVLCPTCGNTFEKANMDKSCAFCKTSSDKFITI"
     gene            complement(3554..3979)
                     /locus_tag="VI413_07110"
     CDS             complement(3554..3979)
                     /locus_tag="VI413_07110"
                     /inference="COORDINATES: protein motif:HMM:NF021505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2231 domain-containing protein"
                     /protein_id="HEY6914428.1"
                     /translation="MFTTTHLHPMLVHFPIALVAIGFLADLISLFIKKELFFPKMSFY
                     LLLLGTLSAIAAVLSGVFFTSEMSGTAGEVQETHELLAFITLSLLVITSLLRIIQLRK
                     PESYNLKWSAFVLYALATIAVSITGFYGGNLVYNYMMPL"
     gene            complement(4144..4776)
                     /locus_tag="VI413_07115"
     CDS             complement(4144..4776)
                     /locus_tag="VI413_07115"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding oxidoreductase"
                     /protein_id="HEY6914429.1"
                     /translation="MKIVIFGASGKTGTLLVEQALDKGYQVIAYMRKTGPVFKEHPNL
                     KIIVGRLNETLKMKDAITGADACVSALGGSSLTHRSPEIVQGIENIVNIMEQVGIRRF
                     IYLSSIGAGDSRFLFAQPIRFLIFNLILRVPLADHNTNENRISSSNLNWTIVRPGSLT
                     NGSITVDLKFGTERVPVTGNKSISRANVAAFMLHQLTIDTFSKKAVWLYE"
     gene            complement(4928..6574)
                     /locus_tag="VI413_07120"
     CDS             complement(4928..6574)
                     /locus_tag="VI413_07120"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016805 - dipeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0070004 - cysteine-type exopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C69 family dipeptidase"
                     /protein_id="HEY6914430.1"
                     /translation="MIKKGIFTLAFILSLNSTFACTNFLVGKAATLDGSTLISYNADS
                     YFLFGALYHYPAATYPAGSMLDVHDWDSGKYLGKIKQVEKTYSVIGNMNEYQLSIGET
                     TFGGREELVDTTAIMDYGSLIYITLQRAKSAREAIKVMTDLVAEYGYYSEGESFSIAD
                     PNEVWIMEMVGKGHNNKGAVWVAQRIPDECVSAHANQARITTFPFDDKNNCLYAEDVI
                     AFAREKGYFKGKNKDFSFSDTYAPLDYTALRACEARVWSFFRKVDPAMDKYISYVKGE
                     TAERMPLWIKPTFKLTAQKIKEYMRDQYEGTEMDMTKGIAAGPFGSKLRCSPLTFKVD
                     SVDYVHERPTATQQTGFTFVAQMRSWLPDYIGGILWFGVDDAATSLYVPMYCGINSVP
                     ECYRADNGSLLDYSATSAFWTYNWVANYAYSKYSYMFADIKKVQSQWESDFNALVPAI
                     DKVAVGMSEADGRIFLTNFSCSQAENSTAAWKKLGEYLLVKYMDGNIKAEKNGKFVQN
                     EYKIPTTIIRAGYPEEFLRQMVKENPGLRQKSPEEMKNRK"
     gene            complement(6692..7777)
                     /locus_tag="VI413_07125"
     CDS             complement(6692..7777)
                     /locus_tag="VI413_07125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HEY6914431.1"
                     /translation="METIRQPIPKKVSKPYKFYQVLIPVLLGLFVIGWLFLDEFDPAV
                     FFSFKFTFVSGLFIVLAFVLMFMRDFGMMWRFRLFTDKDLSWRQAFHINVLSEFTSAV
                     TPAVIGGSSLVVIFLIKEGINAGRSTTIMFVNLFLDELFFLVVCPVVFLFIPLDQLFN
                     SNSLIVSTFAVVFTGLYITRLAWTTIMFIGIFKRPSWIKHILLTLFRLPVLRRMYIRV
                     ELLTNNLVQASHDIGNRSFGFWAKAFGMTLLTWSARFLVVNAVFMAFNPVNIDHLVVF
                     ARQLILWVYMVVSPTPGGSGVTEYAFKEYYSDVFASTSAIIFVTLVWRVISYYLYLLL
                     GLIVIPNWIKKSFSKSNGSKIASEPEN"
     gene            complement(7765..8943)
                     /locus_tag="VI413_07130"
     CDS             complement(7765..8943)
                     /locus_tag="VI413_07130"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6914432.1"
                     /translation="MKKTVDALRTIGIFNESFPPIMDGVSLTAKNYADWLHKMNQNVC
                     VVTPKAPDYKDNEPYPVYRYTSVPVIGRKPYRLGLPNIDLSFKTELNQVSFGLVHAHS
                     PFSAGRLALSTAKKQKIPFVATFHSKFRDDFEHSVHNKFIAKQMTNEIIRFFEKADEV
                     WIPQASVEETIREYGFKGHVEVVDNGNDFASNEPVEPIRKAARKALHITDDELMFLFV
                     GQHIWEKNTRLIVEALAEIKDLSFKMFFVGTGYATADLRQLVDNMGLNSKVEFMGVIT
                     ERDKLKQFYAAADLFLFPSIYDNAPLVVREAGAMQTPSVLVKGSSSAENITNNFNGFL
                     IENSVESLSSKLRELINSPEIIKKTGLNASQTIARSWESVTEEVLDRYKKIMLRKWRR
                     "
BASE COUNT         2871 a         1768 c         1782 g         2970 t
ORIGIN      
        1 gaaagggtcc tgacagattt tgtcaatgta cgcggttgtg gaatgtgcgt taccagtgaa
       61 ataaaaatct actctacagg ctttttccga gaagtagtcg ctatatcgtt gagcaaaaaa
      121 agaagaacaa tatatcaaaa agagtgctgt taatgctatt tttttgtaca taagcaagtt
      181 gtatttgaat gaatatgcaa atttataaaa ttttttggct tcgcgaaaaa agagtacttt
      241 tgcagcctta ataaataaac aaaatgaatc gttttatttc cagtttccct gttcttttct
      301 tcgccatatt gttttccgtg attttttttt cttgtaaggg tggctcagag ccggaagata
      361 actcggcagc atatatttcc gaagtttttg aatatgtata tgggccgggg cagcatgcca
      421 aaattgcaaa accaactgat gcttcgaact tcataggaga accaaaagcg gataaatggg
      481 tctaccttgg tggatttggc gggtatgtta ttgccggatt taatcatgat gttgtgaacg
      541 gaacaggtga agattttgag gtttttgctt tgcagggtgc ttcgcccgaa ccggctgttg
      601 tgtatgtaat gagcgatacc aatggcgatg gaaaaccaaa cgaaacctgg tatgaactga
      661 aaggaaatca gtttgaaaac tcaaaacgaa attattgggt gagatattct aaagctgtct
      721 ccgatacggc aaacattacc tggttggaca gtgaaggaag caggggagaa ctaaaatgtg
      781 gtttcggagc aaccaattca tctgcttggt ggtggactgc tacaactgct gatagtatta
      841 ccctgaaagg aacccgcttg ccgaatgcct atgatgataa ttctgctaac ggaacacaat
      901 attgggtagt gccgcatgac cggtttatct ggggttatgc cgaaaatgta tatgggacgg
      961 attatgaaaa aactgttggt ggtaataaac tggatatttc caatgcaata gattcactcg
     1021 gtcaggctgt aagtttaccg catatacgtt ttataaaagt gcaaacaggt gttttgcaac
     1081 aagccggatg gactaacgaa gtatcgtcgg aagtaagagg agcaaaagat ttgagaaagt
     1141 aaataaatct caaaagattg aataacaatc tatataatag catttttgac tgcaaaaaga
     1201 tatatctttg cagcttttta tgccaacatt ttcgaattca atctgtttta cagattgaaa
     1261 gaataaattt ctaaaatttc tatgtacata ataagtaaag aatttcattt ctctgccagt
     1321 catattctca acggactaaa agatgatcac ccatgtaaaa gattacatgg tcataattat
     1381 atagttacat tctattttaa atcagaagta cttaatgaag ttggttttgt gattgattat
     1441 cgcgatttgg atccaataaa gaaatacctc gacgatgttt tcgaccatcg ccatttgaat
     1501 gacatcatgc ccggagtaaa tcctactgcc gaaaatattg ctaaatttct tcacgatact
     1561 tttaaaacgc aatttccggt tttattcaaa gtggaagttt gcgaaacacc taaaaccaaa
     1621 gccatttatg aagcttaaat tgaaagttgt agagattttc aattccatcc agggcgaagg
     1681 agctaatgtt ggtcgatcgg ccacttttat ccgcctttcc aactgcaata aaaactgttc
     1741 tttttgcgat accgattggg ataaaggagt cgaaatgact attgaagagg tgctggctga
     1801 agttcagaaa tattcttcga acatgataat ctggactggc ggcgagccaa ctttgcagtt
     1861 aacaaatgag attctaagcc attttgaaaa ttattttcaa gcaattgaaa ccaacggcac
     1921 aaatcccgtt ccggctgaaa ttgactatat ttcttgcagt cccaaagttg aagccgaaat
     1981 tttaaagagt aattttcgat ctgttgatga atttcgtttt ccggttgcgg ttggtgacga
     2041 aataccttcc atagatgatc ttccacgggc ttcaaattat ttcttgagtc cgatttttgt
     2101 tggagaagtg aaaaaatgct tggaaataaa tcggaaaaat ctggattatt gcttgtctgt
     2161 aatcgccaga gagccacgct ggagattgtc ggtacaactt cacaagttgc tgaacgtgca
     2221 gtaaagctat tctatctcaa tcctgtattt atccaacaat ccggcaattc ccattctcga
     2281 gaaacgtgct tttgtaatcc ggtttgcttc cggatcaata gaatagttga aagacgttct
     2341 gaaatctgct ttttcgataa ttgatctgtg aaaagtggcc cgttgcaaat cgcagttgtc
     2401 aagcgtagca gaagtcaaat cggcttctgt aaagtcagtt tcctgtaagt tagagttttt
     2461 gaagcgcgtt ttcttaagct tcattttata gaatacggcg agttttagca tacaactttc
     2521 aaaatcgacc gaaaacagga acggattgca ctcatcaaac tgtaccccaa ccaacttgca
     2581 acccgtaaaa tgaatatcgt ttaatgcggt attttttagg cttgccagac tgaagtcaca
     2641 atcttcaaat gtacattcgc gaaatgtaac atccactaaa tttgatttgt aaaagttgca
     2701 atttacaaat ttgcagttct cgtaaatctc acaaggaaat ttcttgtctg aaaaatcaat
     2761 acgttcaaaa agtttatttt ctatcacttt gctgtttgtt tattggtcga caaaaataag
     2821 catttaaaga tataaatcat agtttccaaa cacaaaaaca ggggaacacg cagtgtattc
     2881 ccctgtttta ttacagctct acggtgtgag tttatatcgt aataaattta tcgctacttg
     2941 ttttacagaa tgcacaactt ttgtccatat tggctttctc gaaggtgttg ccacacgtag
     3001 ggcaaagaac gtattcgaaa gacagggtgc tctcattgtt tagttttacg gccgctagtg
     3061 cttttgcata aaattccttg tgttttttct ctgtatcaat tgcccaagtg aatgatttta
     3121 tggctttgtc aaccttttct tctttagcag cagcaatgaa ttccggatac atacttacaa
     3181 cctcgtaaga ttcgccatca atggcggcct gtagattttc agccgtagtt tttacttcaa
     3241 attcaggttt gaattcttcc attttggctc ctaatgcttc taatactttg ctgtgatttg
     3301 ccgcatgaat ggcttctgat ttcgaagcgg catcaaacaa tttagcaaca gtgtctaatc
     3361 cctcttctct ggctttgtca gcaaatgctt tgtatttagc actggctgtt gtttctcctt
     3421 taattccggc tttcaggttt tcgattgttt ttacaggttt gggttggcac ccaacaaata
     3481 ctattaaagc tacagctgca ataaataaga tacttttttt cataactttt ttgtttaaag
     3541 attaatatag attttataaa ggcatcatgt aattgtacac caaattgcct ccatagaaac
     3601 ctgtaatgct tactgctatg gttgctaatg cataaaggac aaaagctgac cacttcagat
     3661 tatagctttc aggttttcgg agttgaataa ttcgaagcaa tgaggtaatt actaaaagac
     3721 ttaatgtgat aaatgctaat aactcgtgag tttcctgaac ttctccagct gtaccggaca
     3781 tctcagacgt aaaaaaaact ccagataata ctgctgcaat ggcggataat gttcccaaaa
     3841 gaagtagata aaaactcatc tttggaaaaa aaagttcttt ttttataaat aaagaaatta
     3901 gatcagccag aaagccgatt gcaaccagtg caatcggaaa atgaactagc attgggtgaa
     3961 gatgtgttgt tgtaaacata gtattcggat ttaaaattta tgtaaatgca aacaattgat
     4021 tttgaattat tagctcaata gagaatgttt aaagttaact aagatcactg taattaaatg
     4081 catagttcca agaagttgaa gttttgagat ttcgattttc aactgaaatt actttccgga
     4141 cttttattca taaagccaaa cagccttttt ggagaaggtg tcaattgtaa gttgatgcaa
     4201 cataaatgct gcaacatttg cacgtgaaat acttttgttt cctgtcacag gaactctctc
     4261 tgttccaaat ttcaagtcaa cagttataga accattagtt aaagacccag gacgtactat
     4321 tgtccagttc aggttgcttg aggatattcg gttttcattt gtgttatggt cggccaatgg
     4381 aacgcgtagt atcaagttga agattaaaaa gcgaattggc tgtgcaaaaa ggaaacgact
     4441 atcaccagcc ccaatactcg ataaataaat aaatcgtcga attcccactt gctccatgat
     4501 gttgacaata ttttcaatcc cctgtacaat ttccggactg cgatgggtga gggaactgcc
     4561 tcccagagcc gatacgcatg catcggcacc agttatggca tctttcattt tgagagtttc
     4621 atttagtcgc cctacaataa tcttcagatt tggatgttct ttaaagacag ggccggtttt
     4681 acgcatgtat gcaataacct ggtaaccttt gtccaaagcc tgctcaacta ataaagttcc
     4741 ggttttgcca cttgccccaa agattactat tttcattttt tattcgttga agttatttta
     4801 cactataata ataaacagta taaaaataca aatgtttaat tctttgttca aaaaaagaga
     4861 gaggaaaaat cacttccgca atttttcctc tctttctttg tctgtttctt tgttcaaaca
     4921 aattatgcta ctttcggttt ttcatttctt ctggtgattt ctgccgcaat ccaggatttt
     4981 cttttaccat ttgacgcagg aattcttcag gataacccgc acggataatt gttgttggaa
     5041 ttttatattc gttttgaacg aatttaccat ttttttctgc tttgatattg ccatccatgt
     5101 attttaccaa caggtattct cccagttttt tccatgctgc agttgagttt tcggcttgag
     5161 aacaactaaa attcgtaagg aaaatgcgtc catcagcttc gctcattcct actgccactt
     5221 tatcaatagc cggaaccagt gcattgaaat cactttccca ttggctctga actttcttaa
     5281 tatcggcaaa catgtatgaa tatttactgt aagcatagtt ggccacccaa ttgtatgtcc
     5341 aaaaagcaga agttgcagag taatccagca aactgccatt atctgcacga tagcattcag
     5401 ggacgctgtt gatgccgcaa tacattggaa catacaaact tgttgcagca tcgtcaactc
     5461 caaaccacag aattccacca atataatcag gcaaccaact gcgcatttgt gccacgaaag
     5521 taaagccggt ttgctgagtt gcagttggac gctcatgaac gtaatccaca ctgtccactt
     5581 tgaacgtcag tggactacag cgaagtttgc tcccaaatgg accggctgcg ataccttttg
     5641 tcatatccat ttcagttcct tcgtactggt cgcgcatgta ttctttgatt ttttgagctg
     5701 ttagtttgaa ggtgggttta atccaaagtg gcatgcgctc ggcagtttcg cctttaacgt
     5761 acgaaatata tttgtccatt gccggatcaa ctttacggaa gaaactccaa acgcgtgctt
     5821 cacatgcacg aagtgctgtg taatcaagtg gtgcgtatgt atctgaaaaa ctgaaatctt
     5881 tatttttccc tttaaaataa cccttttcgc gggcaaatgc aatcacgtct tctgcataca
     5941 ggcaattgtt tttgtcatcg aaagggaaag ttgtaattcg agcttggttg gcgtgagccg
     6001 atacgcattc gtccggaatt cgttgagcta cccatacagc acctttgtta ttatggccct
     6061 tgccaaccat ttccataatc cagacttcgt ttgggtcggc aatggagaat gactctcctt
     6121 cgctgtagta gccatattct gccactaaat cagtcattac tttaatggct tcgcgagcag
     6181 attttgcccg ttgaagcgtg atataaatca agcttccata atccataatg gcagtcgtgt
     6241 caaccagttc ttcgcgccct ccaaaagtgg tttcgccaat actgagttga tattcgttca
     6301 tattcccgat tacagaatac gttttctcaa cttgttttat tttaccaaga tattttcctg
     6361 aatcccaatc gtgaacgtca agcatgcttc cagctgggta agtggctgca ggataatgat
     6421 ataatgcgcc gaataaaaaa taggaatctg cgttatacga aataagggtg gacccatcta
     6481 gggttgctgc tttgccaact aaaaagttgg tacatgcaaa tgtgctgttc agacttaaaa
     6541 tgaaagcgag tgtaaaaata ccttttttta tcattgttta tttgattatc gatttgatgg
     6601 atacaaagat acaggattaa atcaaaaaaa taaaattctg attatggctg tacgtaattt
     6661 attaaatttt gcagttcagc caattcgcag cttaattttc tggttcggaa gctattttcg
     6721 atccattact tttggaaaaa gactttttaa tccagttcgg aataacaatt agtccaagca
     6781 ataggtataa ataataacta attaccctcc agacaagtgt tacgaaaatg atggcacttg
     6841 tagatgcaaa tacgtcactg taatattctt tgaatgcata ttcggttaca ccgctacctc
     6901 cgggagttgg acttacaacc atgtaaaccc acaagattaa ctgacgggca aaaacaacca
     6961 aatgatctat atttaccgga ttaaaggcca tgaatacggc atttacaact aaaaaccggg
     7021 cactccaggt taataatgtc attccaaatg ccttagccca gaaaccaaaa gaacggtttc
     7081 caatgtcgtg agaggcttgt accaaattat tcgtcagcag ctctactctt atatacatgc
     7141 gacgtaaaac tggtagcctg aaaagtgtaa gtaaaatgtg tttaatccaa ctaggacgtt
     7201 tgaaaatacc gataaacatg attgtggtcc atgctaaacg cgtgatatat agcccggtaa
     7261 atacaacggc aaaagtagaa acgatgaggg aattggaatt gaaaagttgg tcgagcggaa
     7321 tgaaaagaaa tacaacgggg catacaacca gaaagaataa ttcatccaga aacaggttga
     7381 caaacataat tgtggtgctg cgcccagcat ttattccttc tttgataaga aaaataacca
     7441 ctaggctgga accaccgatt acagctggcg taacagctga cgtaaattca cttagcacat
     7501 tgatatggaa agcctgcctc caggataaat ccttgtctgt aaaaagtctg aacctccaca
     7561 tcatgccaaa atcacgcata aacattaaga caaatgctaa cacgatgaac aagccgctga
     7621 caaacgtgaa tttaaaagag aaaaaaactg caggatcaaa ttcgtcgaga aacaaccatc
     7681 caattacaaa taatccgagt aaaaccggaa ttaatacctg gtaaaattta tagggttttg
     7741 atactttttt gggtattggc tgtcttatcg tctccatttt cgtaacatta tttttttata
     7801 tctgtcaagc acctcttctg taacactttc ccacgaacgg gcaatagtct gtgaagcatt
     7861 taatccggtt tttttaatta tttcaggtga atttattaat tccctcagtt tggaagacaa
     7921 agattcaacg gaattttcta ttaagaaacc attgaaattg ttggtaatat tttccgccga
     7981 ggaagatcct ttcactaaaa cagaaggcgt ttgcatagct ccggcttccc gaactacaag
     8041 cggggcgttg tcataaattg atggaaacag gaataaatca gctgcagcgt aaaattgttt
     8101 aagtttatcg cgctcagtta taactcccat aaattcaact ttggaattca aacccatatt
     8161 atcaaccagt tgtcttaaat cagctgttgc ataaccagtt cccacaaaga acattttaaa
     8221 tgacaggtct tttatttcgg ctaatgcttc aacaatcaac cgtgtgtttt tctcccagat
     8281 gtgctgacca acaaaaagaa acattaactc atcatcagtt atgtgcaaag ctttacgagc
     8341 agcttttcta atgggttcaa cgggctcgtt tgaagcaaaa tcattaccat tatccaccac
     8401 ttcaacatgc cctttaaatc catattcgcg aatagtttcc tctaccgagg cctgaggaat
     8461 ccatacttca tcggcttttt cgaagaagcg gatgatttca ttggtcattt gtttggcaat
     8521 aaatttattg tgaaccgaat gctcaaaatc atctctgaat ttggagtgga aagttgctac
     8581 aaacggaatt ttctgttttt ttgcagtact caatgctaag cgcccggcac tgaacgggga
     8641 gtgtgcatga actagaccga acgaaacctg attcaattct gttttaaacg aaagatcaat
     8701 attgggaagt ccgagtcgat atggcttacg gccaataacc ggaactgaag tatatctgta
     8761 tacgggatat ggttcattat ccttgtaatc cggagctttt ggtgtaacaa cacaaacgtt
     8821 ttgattcatt ttatgcagcc agtctgcata atttttagca gtaagagaaa ctccatccat
     8881 tatcggagga aagctttcat tgaaaattcc aattgttctt aatgcatcaa cagttttctt
     8941 catcttttta ggctttgtct tttgtttaga attagaaaag caaacaattt tcttattcac
     9001 caaaggaatg caaatttagg actttctttt catatttcta caattacaat gctcgtatgg
     9061 gctctctgat aaatttaaaa cacatttatt aacgaaaatc aagcttttag aacgtcattt
     9121 tgatagttgg acaataacgg gattgtagta cttttgtggt ttccactgtg acaattattg
     9181 tacctgattt ttttttgtaa gtatttgaag atattaatgc ttaatctctg tttttgtgtt
     9241 gtaattatta ttaatgatta attatcactt gtttatgact ccattagcac tttcactttt
     9301 attagggacg acggttggtt cgcaatcttt taattttgac atccaaaagg atacagtcat
     9361 aaataaggag attaaggaag ttgaagtcgt t
//
LOCUS       DATDNM010000422         3136 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_909479, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000422 DATDNM010000000
VERSION     DATDNM010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_909479"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(210..581)
                     /locus_tag="VI413_07135"
     CDS             complement(210..581)
                     /locus_tag="VI413_07135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009347746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HEY6914433.1"
                     /translation="MIYFKDESYKIIGSCFKVHSELGPGFSESVYQEALSIQFRKDDI
                     PFEREKILNVYFDGEKLKKHFKSDFVCFDSIIVELKAHPFIHNDNIEQTRNCLKSTKL
                     KLGLLINFGEMSLTYKRVINL"
     gene            complement(652..1488)
                     /locus_tag="VI413_07140"
     CDS             complement(652..1488)
                     /locus_tag="VI413_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6914434.1"
                     /translation="MEFNTVIKPKNKLFDVDFKELWQYRDLFSMFVKRDIITQYKQTI
                     LGPAWFFIQPALTTIMYMVVFGGIAKISTDNLPQPMFYLAGIVCWQYFSDCLNKTSTT
                     FTTNQGIFGKVYFPRLIVPLSTVASNLVRMGIQFLLFVAVYIYYLITGVHIAPNVYIL
                     LLPVLILMLAGLSLGFGIIISSMTTKYRDLTILFSFIVGLWMYATPIIYPLSTMSPKR
                     QWIMALNPVTSIVEAFKYGTMGVGTFSWMQLAYSFGFMVVLLGIGIVVFNKVQRSFMD
                     TV"
     gene            complement(1815..2981)
                     /locus_tag="VI413_07145"
     CDS             complement(1815..2981)
                     /locus_tag="VI413_07145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914435.1"
                     /translation="MKKISTLVLALMSMFVISQSALALTYNVTVPAGTEACFIAGAMN
                     GWSATAGRMTKVDATHFTITYDAATATDEYKYLSGPDWKYEEKTEAGTALPANRTWTA
                     SDVVAKWGALYLLSYAKDVTIDVLTPTTTVQCYLVGNFNGWASPSTATQMTKGATTGD
                     GVEFYITVNVLDTTIMEYKVCAGPAWSYEQKTPSANFKYMTDGGVVIVTEFKAIFDPA
                     KTGTINITATVPAGTDRVWIQGDFLGWDMGKAMEGTKNTNGTFSFSIPMVQSIEYKMY
                     NLANWNNVEVDAAGVEVANRKAAYPADANLAITVIGWKTPLAVPTINMNNYKIYTNDH
                     SLVVEGVTSQVDVIDISGRILQSVKMTGKFTSEKLNAGLYILRVDGATKKVSLK"
BASE COUNT          996 a          623 c          570 g          947 t
ORIGIN      
        1 gatagaataa acggatcgaa caccaaccgc agcagagcaa taatcttatc aataattgca
       61 gtatcgggaa gcgaaaagct cagcttagtt attcgccatt tcagaatcaa ctgtccgtag
      121 acagtaaaga aaagcgttgc aaaaacgtat atatagcgca tagcgaacaa attttacgaa
      181 ttaagaatta ctaattacac gaataaaaat caaaggttta tgacacgttt ataagtcaaa
      241 ctcatttctc caaagtttat taagagtcct agttttagtt ttgtagattt cagacaattc
      301 cgagtttgtt caatattgtc attatgaata aatgggtgag cttttaattc aacaataatg
      361 gaatcaaaac atacaaaatc tgatttaaaa tgctttttta atttttctcc atcaaaataa
      421 acattcaata ttttttcacg ttcaaaagga atatcatctt tcctgaattg tattgaaagc
      481 gcttcctgat agactgattc tgaaaaaccg ggtcccaatt cgctatgcac tttaaaacag
      541 gaacctatta ttttataact ttcatcttta aaataaatca atcatatttg tattcgcttt
      601 aattcgtcct caattcgtgt tattcgtctt tttaattcgt gaaatcagta ctcacacagt
      661 atccataaaa cttcgttgca ctttattaaa caccacaatt ccaataccga gcagcaccac
      721 cataaatcca aaactataag ccagctgcat ccaactgaac gtacctacgc ccatagtgcc
      781 gtatttaaat gcctccacaa tggaagttac cgggttaagt gccataatcc actgccgttt
      841 gggcgacatg gtgctcaggg gataaataat cggagtagca tacatccaaa gccctacaat
      901 aaaagaaaaa aggatagtca ggtcgcggta tttggtagtc atggaagaga taataatacc
      961 aaagcccaag gataaacctg ccagcataag aataagcaca ggcagtaaca aaatatatac
     1021 attaggagca atatgcacac ccgtaataag gtaataaata tataccgcca caaacaacag
     1081 gaactgaatg cccatacgca caaggtttga tgctactgtc gacagcggaa caatcaaccg
     1141 gggaaaatac actttcccga aaatgccctg gtttgtggta aatgtggttg aagttttgtt
     1201 caggcaatcg gaaaaatact gccagcaaac gatacctgcc agataaaaca tgggttgagg
     1261 gagattatcg gtagatattt tagctattcc gccaaacacc accatgtaca tgatagtggt
     1321 aagtgccggt tgaataaaaa accaggctgg tccgagaatg gtttgcttgt attgggtgat
     1381 aatgtcgcgc ttaacaaaca tcgagaataa atcgcggtat tgccagagtt ctttaaaatc
     1441 aacgtcgaaa agcttgtttt tgggtttaat gacggtattg aattccattt atagtgttat
     1501 cgttagtaat gggtagttta tagctggtgg tggttagccg gaattatgta caatttttga
     1561 attacaaaag tacgattttt tttaatgttg gcaaggctgg caagcaatat ggtttgcaga
     1621 gcggaactat accgatagct caaagaatat agtccggttt tcgcccttgc ctgcttcaga
     1681 caagttcgtt tcatagcctt gtttaattta tttcgaattg gcattaatga ttctgtgctt
     1741 aaacatgaaa atccaatgaa aaaagggctg cacaacatcg cgtcgtacag ccctttcagc
     1801 caattaacct gaatttattt cagagaaact tttttagttg cgccatcaac acgtaagata
     1861 tataaaccgg cattcaattt ttcggaagtg aatttacctg tcatttttac gctttgaaga
     1921 atacgtccgc tgatatcaat tacatcaacc tgtgaagtta caccttcaac aaccaatgaa
     1981 tggtcgtttg tatagatctt gtaattgttc atattgatag ttggaactgc aagtggagtt
     2041 ttccaaccaa ttacagtaat tgctaaattt gcatctgcag gataagcagc ttttcggttt
     2101 gcaacttcta cacccgccgc atctacttcc acattgttcc aatttgctaa attgtacatt
     2161 ttatactcaa tagactgaac cataggaatt gagaacgaga atgtgccatt cgtatttttt
     2221 gttccttcca tcgccttacc catatcccaa cccaggaagt cgccctgaat ccaaacgcgg
     2281 tcagttccgg caggtacggt ggcagtgata ttgattgttc cggtttttgc aggatcaaaa
     2341 atggctttaa attcggtaac gataacaaca cctccatcag tcatatattt aaaatttgcc
     2401 gatggtgttt tttgttcata cgaccatgcc ggacccgcac agactttata ttccattatc
     2461 gttgtatcaa gcacgttaac agtaatataa aactcaacgc catctccggt tgtagctccc
     2521 tttgtcatct gggtggcagt agaagggctg gcccaaccat tgaaattacc aacaagataa
     2581 cattgtactg tggtggtagg agtcaataca tcaatggtta catcttttgc ataagacaac
     2641 agataaagtg caccccattt ggcaacaaca tcagaagctg tccaggttct gtttgcaggt
     2701 aacgctgttc ctgcttcagt tttttcttca tatttccagt ccggtccgct caggtatttg
     2761 tattcgtcag tagcagtagc agcatcatag gtaattgtga aatgcgtggc atcaactttt
     2821 gtcatacgcc ctgccgttgc actccaacca ttcattgctc cagcaataaa acatgcttct
     2881 gtccctgcag gaacagttac gttataagtc aatgccagtg cagattgact aattacaaac
     2941 atactcataa gagctaaaac taatgtagaa atttttttca tgatagtaat tttttaaagt
     3001 aattaaataa aaagttaatt gattattata gttgtgtcat actccctata ttgtagaaat
     3061 aacacttagc tattttgatt tgttcacaaa actaacacat tactttttcc atcggtacga
     3121 aacgaggctt ttagcc
//
LOCUS       DATDNM010000423         3014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_695256, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000423 DATDNM010000000
VERSION     DATDNM010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3014
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_695256"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(183..578)
                     /locus_tag="VI413_07150"
     CDS             complement(183..578)
                     /locus_tag="VI413_07150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914436.1"
                     /translation="MPRLELTQIYLELEHEIKRLSLSTDFVYMDATRDDAHQVISEMR
                     QDIDNWMFQLSERTIACYELESLLKSKRDEIYFQRLENKGVEKDKLENLKDEILHAIA
                     QSIMNSYFNSLFRSETHRINRNLKKEMIF"
     gene            786..1382
                     /locus_tag="VI413_07155"
     CDS             786..1382
                     /locus_tag="VI413_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEY6914437.1"
                     /translation="MSDTFKTISSITEGIYKEKGSKFLSFAIPVNDVEEVKEIVKEYR
                     KRFFDARHVCYAYMLGADRENFRANDDGEPSGTAGRPILGQINSRELTNVLVIVVRYF
                     GGILLGTGGLVTAYKEATADALNQAVIIEKTVTETISINFDYIQMNDVMKVIKDTSPQ
                     ILSQTFDNQCAMQLSIRKQDAELLIGKLEKISSLSIEN"
     gene            1693..2622
                     /gene="pyrB"
                     /locus_tag="VI413_07160"
     CDS             1693..2622
                     /gene="pyrB"
                     /locus_tag="VI413_07160"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009319530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HEY6914438.1"
                     /translation="MSNNSLVSISDYSKEDILAILDSAAKFEANPNRKTLDGKVIATL
                     FFEPSTRTRLSFETAVIRLGGSIIGFSDAATSSSSKGETLNDTIHMVSCYADAIVMRH
                     PLEGAARYAAEVSPVPIINAGDGANQHPSQTLLDLYSILKTQGTLENLTICLVGDLKY
                     GRTVHSLIMAMSHFHPTFKFIAPDELKMPDEYKVFCRKKNIRFTEVNELNDNFNDADI
                     LYMTRVQKERFQDLMEYERVKNVYTLKNAMLENTKPNLRILHPLPRVTEIDPDVDSNE
                     KAYYFRQAQNGLYVRQAIVSKVLKLDSQINKGE"
     gene            2633..>3014
                     /locus_tag="VI413_07165"
     CDS             2633..>3014
                     /locus_tag="VI413_07165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009319529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HEY6914439.1"
                     /translation="MSTKELKVAALRNGTVIDHIPADKLFKVVSILHLDTCLNQITLA
                     NNLESAKIGSKGLVKISERALAEDETNKIALIAPNAKINIIRDFQVVEKRPLILPDEI
                     REIVQCNNPVCVTNNQPISTRFQVQ"
BASE COUNT         1021 a          562 c          544 g          887 t
ORIGIN      
        1 taccaactga gctaaagagg cataatcttc actcaaaaaa attgagcgtg caaatatata
       61 cttttttttg tttttttttt cagaaaaaac aaaaatacct gccgattttc aattaaaaac
      121 cgacaggtat aaacatgcaa attattaaac aatcaaaaga attgttggca atataattat
      181 tttcaaaaga tcatctcttt tttgagattt ctattgattc gatgggtctc tgaacgaaat
      241 aaagaattaa aataactgtt cataattgac tgagctattg catgtagtat ttcatctttg
      301 agattctcaa gtttatcttt ctcaacacct ttattttcaa gacgttgaaa atagatttca
      361 tctctcttcg atttcagcaa actttcaagc tcataacaag caatagttct ttcacttaac
      421 tgaaacatcc aattatcaat atcttgcctc atttcagata taacctggtg cgcatcgtcg
      481 cgagtagcat ccatgtaaac aaaatctgta gacaggctca atcgtttaat ttcatgttcc
      541 agttccaaat aaatctgtgt taattcaagt cttggcataa tattcttatt ttaaagttta
      601 gataagtcaa caattcttat gtatttcagg gtaaaaatta taacatatat ttattcaaga
      661 atgttctgca aatgacctgt ttttagtaca aaaaactata aaaattctaa tttataattc
      721 aatttcatta ttacggtttt tgttgtaatt ttgcggacag ttacaagcaa attaggaaca
      781 aacatatgtc cgacactttc aaaaccattt caagcattac agaaggaatt tataaggaaa
      841 aaggcagcaa atttctgtca tttgccattc cggtgaatga tgtagaagaa gtaaaagaaa
      901 ttgtaaaaga atatcgcaaa cgctttttcg acgcacgcca tgtatgttat gcttatatgc
      961 ttggtgccga ccgagagaat tttcgtgcca acgatgatgg agaaccatca ggtactgccg
     1021 gccggccaat tcttggacaa atcaactctc gcgaactcac taacgttttg gtcattgtag
     1081 ttcggtattt cggaggtatt ttgcttggca ccggtgggtt agtaactgca tacaaggagg
     1141 ctacggccga tgccctgaat caggcagtaa ttattgaaaa aactgtaact gaaacaatat
     1201 caattaattt cgattacatt caaatgaatg atgtcatgaa agttatcaag gatactagcc
     1261 cgcaaattct ttcgcagaca ttcgacaacc agtgcgccat gcaactttct atccgaaagc
     1321 aagacgcaga attattaatc ggaaaacttg aaaaaatcag cagtttgtca atagaaaatt
     1381 aatcggagca taagcttgaa attccatttc attatttcaa ataaaacgac tatctttgta
     1441 atcgaaaatg aaaacgagaa actttaaata ttttttcgaa caaagcagtt cactgcgaaa
     1501 taattgcgtg aataagttgc ttatgagaaa tgcgaaacca atatgaatct acatcagatt
     1561 tgtgttggtt tttttgttat aatttcacaa attccttaaa caggaacaag agtgtgttaa
     1621 gagaaaatat tagtgcgttt aaaataaaaa tacaaactaa ctaaagcccc tttaggggtt
     1681 tggggtcata ttatgagtaa caacagctta gtatcaattt ccgattacag caaagaagat
     1741 attctggcga ttcttgattc tgccgcaaaa ttcgaagcca atccaaaccg taaaacactg
     1801 gatggaaaag tgattgccac tttgtttttc gaaccgtcaa cccgtacccg gctgagtttt
     1861 gaaactgctg taattcgttt aggtggatct attattggat tttctgatgc agccaccagc
     1921 agttcgtcga aaggtgaaac attgaacgac accatccaca tggtaagttg ttatgcagat
     1981 gcgatagtca tgcgccatcc actcgaagga gcagcacgat atgcagctga ggtttcgccg
     2041 gtaccaatta tcaacgcagg tgatggcgca aaccaacatc cttcgcaaac attgctcgac
     2101 ctgtattcta ttctgaaaac gcagggaacg cttgaaaatc ttactatttg ccttgtcgga
     2161 gatttgaaat acgggcggac tgtgcattca ctcattatgg ccatgtcgca ttttcatccc
     2221 actttcaagt ttattgctcc tgatgagttg aaaatgcctg acgaatacaa ggttttttgc
     2281 aggaaaaaga atatacgttt cactgaagtg aatgagctaa acgataactt caacgatgct
     2341 gacatcctgt acatgactcg cgtccagaaa gagcgttttc aggatttgat ggaatacgaa
     2401 cgtgtgaaaa acgtttatac actaaaaaat gctatgctcg aaaacacaaa accgaacctg
     2461 cgcattctgc atccactgcc acgcgtcacc gaaattgatc cggatgtgga cagcaacgaa
     2521 aaagcgtact acttccgaca agctcaaaac ggtctgtacg tacgacaagc aattgtaagc
     2581 aaagtattga aattagattc acaaatcaat aagggggaat aaaactaagg ctatgtcaac
     2641 taaagaatta aaagttgccg cacttcgcaa cggaactgta atcgaccata ttccggcaga
     2701 taaattattc aaagtagtat caatactgca tttggatact tgtttgaatc aaatcacgtt
     2761 ggccaacaat ctcgaaagtg caaaaatagg atcaaaagga cttgtgaaaa tatcagagcg
     2821 cgctttggca gaagatgaaa caaataaaat tgctttgatt gcgcccaatg cgaaaataaa
     2881 tattatacgt gattttcaag tggtagaaaa acgtccattg attcttcctg acgaaattcg
     2941 cgagattgtg caatgcaaca atccggtatg cgttaccaat aatcaaccta tttccacacg
     3001 ttttcaggtg caaa
//
LOCUS       DATDNM010000424         4226 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1444217, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000424 DATDNM010000000
VERSION     DATDNM010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4226
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1444217"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..896
                     /gene="tal"
                     /locus_tag="VI413_07170"
     CDS             <1..896
                     /gene="tal"
                     /locus_tag="VI413_07170"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEY6914440.1"
                     /translation="SISVYHPIDATTNPSLLYTASMDPQYSSLIDDAISYARSMTSDK
                     ADMLQCAMDKLAVNFGLKILEIVPGRVSTEVDARLSFDTEASIRKAHELIALYEENGI
                     SRERILIKVASTWEGILAAEALEKEGIHCNLTLLFSMAQAIRCAEAKVTLISPFVGRI
                     LDWHKKDRGVSEIPGAEDPGVKSVTEIYNYYKKFGYNTIVMGASFRNIGEIIEIVGCD
                     ALTIAPSLLKELESTEGVLEKKLDAEKSKLLDIKPVYMDEKTFRWMLNEDAMATEKLA
                     EGIRNFTKDLIKLEKHIAELL"
     gene            1161..1601
                     /locus_tag="VI413_07175"
     CDS             1161..1601
                     /locus_tag="VI413_07175"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY6914441.1"
                     /translation="MKTINLIRKSLLLGFILIMSSSLYAQDPVKVASNVYKKVVLNNE
                     KVRVIEIEFAPGEVAPWHHHPAHVAYVLTGGDLEITDKGKTAQVVTLKEGEAMYLPAV
                     THMAKNVGTTTIKLVVTEIKPGHQMTGSATMKKEPVKMENKTMK"
     gene            complement(1719..3869)
                     /locus_tag="VI413_07180"
     CDS             complement(1719..3869)
                     /locus_tag="VI413_07180"
                     /inference="COORDINATES: protein motif:HMM:NF025938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEY6914442.1"
                     /translation="MKIEKVLVKLNTQVKLCILALLLITSSTISAQDITSGLKLHYKF
                     ETVATIPDNSGSNQKGIKNGSVTTVIGVCGNAMHFATSSDYIKLPDNLTKTLTDFSVA
                     CWVKLDQVNASSRIFDFGTGPASYMSLTPLASGAGLRFSITTSGKAGEEQINYNTPLQ
                     AGVWVHVAVVREGTLGILYVNGAQVATNASMTLSPSALGATTQNYIAKSQSPDPALAG
                     SIDEFRIYNRALTATDLLMLRSATTPRYAENVSISPSLKRQTMIGWGGSLCWWAHIMG
                     GYSDSEVKTICDWITDPVHGLNMNIFRFNIGGGDDPIHKHMGYGKDLPGYKASATAPY
                     DWTQDANQRKIVKQLIASRIAQNGGNDIHLVAFSNSPPYWMTNSGCTSGSKTASTPNL
                     KPDMADDFADYLTEVTRYYHDSLGITFNTIEAFNEPDGWWWTAPKDVFATGDTQEGCY
                     FNPDDELPVIRELYKKLVAKNMLSYCTIVASDANSIDAGVQHLQQFINAGDILPKINR
                     VDVHTYGGSQRAALLNLATTVGKKVWQSESSPVWVAGTANDQIMVMANRIVADMKGLQ
                     CPVWLDWQIGAGSGATQWGLILADYANESHKLTKSPAFYIRAQFSRYIKPGYTVIDNS
                     HENVLTAISPDAKELVVTVNNADIFSRKFSFDLSAFTGLGGQIKQVQTLVADSYGNTE
                     TNVPLTGNKFTSDVPAGSVTTYIIPVNQSLSATR"
BASE COUNT         1239 a          919 c          892 g         1176 t
ORIGIN      
        1 cttccatatc agtttaccac cctattgatg ccactaccaa cccatcgctt ctttatactg
       61 catcgatgga tccacaatac agttcgctga ttgatgatgc cattagttac gccagaagta
      121 tgacgagcga taaagcggac atgctacaat gtgccatgga taagctggcg gtgaattttg
      181 gtttaaaaat tctggaaatt gtccccggac gtgtttctac cgaagtggat gcgcgactgt
      241 cgttcgatac tgaagcaagc atccgaaaag cacatgagct gattgcccta tatgaggaaa
      301 atggaatttc gcgcgagcga atactcatta aagtagcttc tacgtgggaa ggaatacttg
      361 cagccgaagc actggaaaaa gaaggaattc attgcaacct taccttgttg ttttccatgg
      421 cccaggcaat tcgttgcgcc gaagcaaaag taacgcttat ttcgccattt gttggccgta
      481 ttctggactg gcacaaaaaa gaccgtggag tttcggagat tcccggtgct gaagatcccg
      541 gtgtaaagtc ggttaccgaa atatacaatt actataagaa gttcggatac aataccatag
      601 ttatgggcgc cagcttccgc aatatcggtg agattataga aattgtgggt tgtgatgctc
      661 tgaccattgc tccttcattg ctaaaagaac tggaaagcac cgaaggagtg ttggagaaaa
      721 aactggacgc tgaaaaatca aaactactgg atataaaacc ggtgtacatg gacgagaaaa
      781 cgttccgctg gatgctgaac gaagatgcta tggcaaccga aaaactggcc gaaggtatcc
      841 gtaatttcac aaaagatttg ataaagctcg agaaacatat tgcagagttg ctttaggcat
      901 aatcaggaga atagataata agcggggaaa accggattgg ttttccccgc ttattatttt
      961 attatgaatc tgcattgcag tttattatgt tcaatttagt ttaatatttc aacctttatg
     1021 aaccataaat cgtttaatga aaactatttt taatctaaac aaagtggcat gaaacgagca
     1081 ttaaaacagc tgtttacaca aaaagaccat gttcattgcg agttccatgc gacaactaac
     1141 taaaaaacaa aaatgaacgc atgaaaacaa ttaacctgat caggaagtct ctgttattgg
     1201 gatttatcct gataatgagc agcagtttat atgcacaaga ccctgtaaaa gtagcttcta
     1261 atgtatataa aaaagtagtt ctcaataatg aaaaggtccg ggtaatagag attgaatttg
     1321 ctcccggcga agtggctcca tggcaccatc atcccgctca tgtggcttat gttttaaccg
     1381 gaggtgacct ggaaattacc gacaagggaa agacagcgca agtggtaacc ctaaaagaag
     1441 gtgaagcaat gtatttgccg gctgtaactc acatggctaa aaatgtagga acaacaacca
     1501 ttaagcttgt tgttacagaa attaaacccg gtcatcaaat gactggatca gccacaatga
     1561 aaaaagaacc tgtaaaaatg gaaaacaaaa ccatgaagta aataaattag aacagaatac
     1621 tataaataaa gggaagaaac cccgcgtttt cttcccttta tttataagtc aataatttct
     1681 aagcctgatt tttttccttc cttttctata tgcctgaatc acctggtcgc agataaactc
     1741 tggttaacgg gtataatata ggtggttaca gagcctgccg gcacatctga agtgaactta
     1801 ttcccggtta acggcacatt agtctccgta ttcccgtaag agtcagccac taatgtctgc
     1861 acttgtttta tttgcccacc aagacctgta aaagctgata aatcgaatga aaacttcctg
     1921 ctgaaaatat ctgcattatt cactgtcaca acaagttctt ttgcatcggg gcttatcgct
     1981 gtcagtacat tttcgtgcga attgtcaata accgtatagc ccggcttaat ataccggcta
     2041 aactgagcgc gtatgtagaa tgccggcgat ttggtaagct tatgcgattc attagcataa
     2101 tctgccaaaa tcaaccccca ttgtgtagct cctgatccgg caccaatctg ccagtcgagc
     2161 catacggggc attgcagtcc tttcatatcc gccacaatac ggttagccat taccataatc
     2221 tgatcattgg cagtacccgc cacccatacc ggcgaagatt cagattgcca tactttcttt
     2281 ccgacagttg ttgccagatt cagcaaagca gcccgttgcg agccaccata ggtatgcaca
     2341 tcaaccctgt ttattttggg gagaatatca ccggcattaa tgaattgctg caaatgttgc
     2401 actccggcat caatgctatt ggcatcactg gcaacaatag tgcaatagga cagcatattt
     2461 ttcgccacga gctttttata taactcccgt atcacaggca gctcatcgtc cggattaaag
     2521 taacagccct cctgcgtatc tccggttgca aatacatctt taggagcagt ccaccaccag
     2581 ccatcaggct cgttaaatgc ttcaatcgta ttgaaggtta ttcccaatga atcatgataa
     2641 taccgggtaa cctctgtcag ataatcagca aagtcatcgg ccatatcggg tttcagattt
     2701 ggagtagatg ctgttttgct acccgaagtg caaccgctgt ttgtcatcca gtaaggagga
     2761 gagttggaaa atgcaaccag gtgaatatcg ttcccgccgt tctgtgctat acgtgaggca
     2821 atcaattgtt ttactatttt tcgctggttc gcatcctgtg tccagtcgta tggagctgtt
     2881 gcgctggcct tgtagccggg caaatcctta ccatacccca tatgcttgtg gattgggtca
     2941 tcgcctcctc cgatattgaa gcgaaagata ttcatgttca ggccatgcac cgggtcggta
     3001 atccagtcgc agattgtttt aacctcactg tcggaatatc cgcccataat gtgagcccac
     3061 cagcacagag aaccacccca gcctatcata gtctgccttt tgagcgacgg cgaaatggat
     3121 acattttcag cataacgtgg agttgttgca gatctcaaca ttaaaaggtc ggtagcagtc
     3181 aacgccctgt tgtagatacg gaactcgtct atgcttccgg caagagccgg gtcgggagat
     3241 tgtgacttgg ctatgtagtt ttgggttgtt gctcccaatg cagaaggcga taacgtcatc
     3301 gatgcatttg ttgctacctg tgctccgttc acatacaaaa tgccaagagt tccctccctg
     3361 acaaccgcca catgaaccca aacaccggcc tgaagcggtg tgttgtaatt tatttgctcc
     3421 tcacctgcct ttccgcttgt ggtgattgaa aaacgaagcc ctgcacctga agccaaaggg
     3481 gtgagagaca tgtatgatgc cggccccgtt ccgaagtcaa aaatacgcga cgaggcgttt
     3541 acctggtcaa gtttaaccca acaggctacg ctaaaatcag tcagtgtttt tgtaaggttg
     3601 tccggcaatt taatataatc ggaactggtg gcaaagtgca ttgcattgcc acacacgcca
     3661 attactgttg tgactgatcc gttttttata cctttttggt tgctccctga gttatcggga
     3721 atggttgcaa cagtctcaaa cttgtaatgc agttttaacc cgcttgttat gtcctgtgca
     3781 gaaatggttg acgaagttat cagtagcaat gccaagatac aaagtttcac ttgagtattg
     3841 agtttaacta aaactttttc gattttcatc cgtaaataat tggtttatat gttttgaacg
     3901 gaaattactc aacaataagt tttatattat cgctttcatt cccactattt ttgtggtcct
     3961 gcaaatagat gccggaataa gtagcacaaa aatagaaaaa ccacattatg aataaacgct
     4021 ggaattagtc ataaacagtc tataattaat caatgtggga gctggttcgt cttgcactgt
     4081 ctgtaaaatg gcaaaatata cactcttata aaacaaacaa ccctccattg tgaattgtgg
     4141 aaggctattt gtttttgggt atgctgttac aaatacgatt ccctattcaa caatcacttt
     4201 gtttacctgg acattcccac ccgaaa
//
LOCUS       DATDNM010000425         2388 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_375355, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000425 DATDNM010000000
VERSION     DATDNM010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2388
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375355"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..761)
                     /locus_tag="VI413_07185"
     CDS             complement(<1..761)
                     /locus_tag="VI413_07185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012457876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEY6914443.1"
                     /translation="MGKIIGIDLGTTNSCVSVMEGNEPIVITNSEGKRTTPSVIGFVE
                     GGERKVGDPAKRQAITNPTKTVFSIKRFMGESYDRLAKEIGRVPFKVVKGDNNTPRVD
                     IDGRMYTPQEISAIILQKMKKTAEEYLGQEVTDAVITVPAYFNDSQRQATKEAGEIAG
                     LNVRRIINEPTAAALAYGLDKTNHDMKIVVFDCGGGTHDVSVLELGDGVFEVKSTDGD
                     THLGGDDFDHRIIDWLVQEFKNENSGIDLSKDPMA"
     gene            1106..1561
                     /gene="folK"
                     /locus_tag="VI413_07190"
     CDS             1106..1561
                     /gene="folK"
                     /locus_tag="VI413_07190"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004307794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEY6914444.1"
                     /translation="MALVYLGLGTNLGNKECNLNDAITALSMEAGFVIRQSAIYASEP
                     WGFASENQFLNAVVLIETNLSPFDLLAKTQEIERNMGRTAKSVNGYSDRLIDIDILFY
                     DNLIIDQPELKIPHPLIVERDFVLMPLVEITPELVHPVLGRKIIDLINR"
     gene            complement(1558..1824)
                     /locus_tag="VI413_07195"
     CDS             complement(1558..1824)
                     /locus_tag="VI413_07195"
                     /inference="COORDINATES: protein motif:HMM:NF020967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HEY6914445.1"
                     /translation="MEDKLITLKNYETMVEAMFDQEILRENNIESSINNEDSVELMPM
                     FGEINDGLRIVVFEKDYEQATKILEDYENAVDDSEEAATENQGN"
     gene            2036..>2388
                     /locus_tag="VI413_07200"
     CDS             2036..>2388
                     /locus_tag="VI413_07200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5063 domain-containing protein"
                     /protein_id="HEY6914446.1"
                     /translation="MEIDQLPDHIVYSTNVIEFVTVAAETCLFLEHASEFPRTDFIQK
                     SVKILPLLYLKASLIDIPETVFDDAPERFVNEEDYQFVREQVEQLLGPDDSYLETFHP
                     DMAISDTPIAVFVSE"
BASE COUNT          648 a          460 c          466 g          814 t
ORIGIN      
        1 aacgccattg ggtctttgct taagtcaata ccgctgtttt cgtttttgaa ttcctgaacc
       61 aaccagtcga taatacggtg gtcaaagtca tcaccaccaa ggtgggtatc accatcggtt
      121 gattttactt cgaatacgcc atcgccaagt tccagtaccg aaacgtcatg agtaccacca
      181 ccgcagtcga aaactacgat tttcatgtcg tggtttgttt tgtccaaacc gtaagccaaa
      241 gctgcagctg taggttcgtt aatgatacgg cgaacattca aacctgcaat ttcgccggct
      301 tctttagttg cctgacgttg tgaatcgttg aaatacgcag gaactgtgat aactgcatca
      361 gtaacttctt gtcccaggta ttcttcagcc gtttttttca ttttctgaag aatgatagcc
      421 gaaatttcct gtggagtata catacgtcca tcaatgtcaa cacgtggagt gttgttgtcg
      481 ccttttacca ctttaaatgg tacgcggcca atttctttag ccaaacggtc atagctctcg
      541 cccatgaaac gtttgataga gaatacagtt tttgtagggt tggtaatggc ctgacgttta
      601 gcaggatcac ccactttgcg ctcgccacct tctacgaaac caataactga aggtgtggta
      661 cgttttcctt cgctattagt gataacgatt ggttcgttac cttccattac agaaacacac
      721 gagtttgtgg ttcctaagtc aattccaata atttttccca tgatcttttt tgaatttatt
      781 ataatacgtt tgagttttcg tgtttatgag tacgactgac attttacaaa gcttgtgcca
      841 acgggttttt tattggtttg atttgaattt tgtcagaaaa agtcagggaa agtgattttg
      901 aacagacaaa ctgactgaca aaagggcagg aattggcaga gaaatagcag tgagaggcaa
      961 ggagtaggag gaaagtaact ttgtgtcttt taaaattaaa tgcattttta ttggggcaaa
     1021 aaacttaatt tcccctatgc tttctcctta ctccttacct cttacttcta aaaaatgtat
     1081 ctttgcacaa aacttatcag tagctatggc attagtatat ttaggactgg gaacaaattt
     1141 aggaaacaaa gaatgtaatc tgaatgatgc aatcactgcc ttgtccatgg aagccgggtt
     1201 tgtgattcgt caatcagcca tttatgcgtc tgaaccttgg gggtttgcat ctgaaaatca
     1261 gtttctgaat gcggtggtac ttattgaaac aaatctgtca cctttcgatt tgctggctaa
     1321 aactcaggaa attgaacgca atatggggcg tacagccaaa tctgtaaacg gatattcaga
     1381 tcggttgatt gatattgata tattgtttta cgataacctg attattgacc aaccggaatt
     1441 aaaaatcccg cacccactga ttgtggaacg ggattttgta cttatgcctt tagtcgagat
     1501 tacgcctgaa ttggtacatc ctgtattggg acgaaaaatt attgatttaa ttaaccgtta
     1561 atttccctga ttttctgttg cggcttcttc tgagtcgtca acggcatttt cataatcttc
     1621 caatatcttc gtagcttgtt cgtaatcttt ctcaaaaacc acaattctta atccatcgtt
     1681 aatttccccg aacatgggca ttaactcaac cgaatcctcg ttgtttatag aactttcgat
     1741 gttgttttcg cgtaaaattt cctgatcgaa catggcttct accatcgttt cgtagttttt
     1801 taatgtaata agcttgtctt ccataatggt gaattttaat ggttaatgat tgatgccaat
     1861 gtttttatca ttctgtaatt ttataacgct ttcattttcg ttaatgtttt cttttggttg
     1921 gaatttgtac actttttccg ggtgtttttc cgcaaattct tataacggat tggatactac
     1981 aaaagtgaat attttttctt acttttgcaa gacattattt aatttatttt tttgaatgga
     2041 aatcgaccaa ttacccgatc acattgttta cagcacaaat gtaattgaat ttgtaaccgt
     2101 tgctgccgaa acatgtttgt ttctggaaca tgcatctgag tttccccgga ctgattttat
     2161 tcaaaaatca gtaaaaatac tcccgctttt gtatttgaaa gcttcattaa ttgatattcc
     2221 tgaaactgtt ttcgacgatg cgcctgagcg tttcgtgaat gaagaagatt atcagtttgt
     2281 gcgcgagcaa gtagagcaat tattgggacc cgacgattcg tacctggaaa catttcatcc
     2341 ggacatggct atcagcgata cgccgattgc agtgtttgtg tccgaaaa
//
LOCUS       DATDNM010000426         6485 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1763526, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000426 DATDNM010000000
VERSION     DATDNM010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6485
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1763526"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..588
                     /locus_tag="VI413_07205"
     CDS             <1..588
                     /locus_tag="VI413_07205"
                     /inference="COORDINATES: protein motif:HMM:NF039204.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5715 family protein"
                     /protein_id="HEY6914447.1"
                     /translation="PIEPSDKLNDPNEIQLIHARTNGLKRPFATNDEFNERIGDLVRK
                     SVLVQVTEHRFYQLKSLSHSQPYLIPEAIDMLNEIGYRFQKRLQEKKYNNYRFRLTSL
                     LRTVETQNNLCHRNGNATKGLSCHLYATTVDISYKNFYNTKADSIEASYEAVQTLTKV
                     LIEMRKECKLLAVRERHQSCFHITAVLCKPLSIKK"
     gene            701..773
                     /locus_tag="VI413_07210"
     tRNA            701..773
                     /locus_tag="VI413_07210"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:734..736,aa:Lys,seq:ctt)
     gene            1043..2260
                     /locus_tag="VI413_07215"
     CDS             1043..2260
                     /locus_tag="VI413_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006844575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEY6914448.1"
                     /translation="MKSTYRVLFYLKKNAIQKNGKSIIMIRITINGEIAQLSSKLQVD
                     PDFWDVKTGKVKGRAAEANNINRQLDNLKSSIDKAYTKQFDEFGYAVPEKIKNTILGI
                     DRKNKTLLEYFDMHNNQYAMKVGYSTTNVTYDRYQLLRERLESFLKEHYNISDIPINE
                     VTPVFLDSFYIYIRNNHKSAHNNAMKAMQRLRRIFYFAKNTGLNIPDPFWNFNMNFET
                     MERDFLSQKEIETIQYKQFASKRVEQVRDLFIFCCYTGLSYVDLCNLKESNIHTAFDN
                     SLWIMSKRQKTNVHFNVRLLNTPLQILDKYKGSQTDGKILPIISNQKLNEYLKEIADL
                     CSITKNLTFHMARHSFATSIALSNGVPIETVSKMLGHKSIKTTQIYAKITDIKLSNDM
                     QKLSEIIDKEIAC"
     gene            2305..2817
                     /locus_tag="VI413_07220"
     CDS             2305..2817
                     /locus_tag="VI413_07220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004319815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HEY6914449.1"
                     /translation="MELQLIQNKIFEVRGLRVMLDFDLAEMYEVKTKVLKQAVKRNIS
                     RFPPDFMFELTKQEWNELVTNCDLFPESLKHSSVSPTVFTEQGVAMLSSVLRSEKAIE
                     VNVQIIRAFVILRQYALGYVELNRKLEEFMVGTNMQFNDIYQALMELASQKELESKPR
                     NPIGFIQKEE"
     gene            complement(2934..3152)
                     /locus_tag="VI413_07225"
     CDS             complement(2934..3152)
                     /locus_tag="VI413_07225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914450.1"
                     /translation="MHKIVREMEVKRICIYPKDIQRITGKSERYGRLLLAKIKERNEK
                     EEHQFVTVDEFCRYTGLKIEQVAPFIAG"
     gene            3290..4039
                     /locus_tag="VI413_07230"
     CDS             3290..4039
                     /locus_tag="VI413_07230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914451.1"
                     /translation="MARQKSILKLQGTIGGISFYKSKDGYLAREKGGVDASRIANDPG
                     FARTRENGAEFGNAASAGKLLRDTLRALAKDASDGRVTARLTQVMAQIKNMDEANARG
                     ERSAAEGMAKDEAKALLIGFNFNVNAALGTVLYKAFEVDTETGEIKIAALTPQKDISL
                     PSGASHIILKSGFASINFLTGESEMIVSAPMRLAVSAEAQAVSLKPATVPTIEGTHLM
                     LLSIDFVQSVNNVDYSLNNNAYNVLAIVNVE"
     gene            4134..4343
                     /locus_tag="VI413_07235"
     CDS             4134..4343
                     /locus_tag="VI413_07235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914452.1"
                     /translation="MKTENNVKAVNPNNMSVVERVKAPTPKFFKILRAIGLGLAAVGV
                     QYWPPLLRFPQHWLRLLVTLHWRAV"
     gene            4395..4586
                     /locus_tag="VI413_07240"
     CDS             4395..4586
                     /locus_tag="VI413_07240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914453.1"
                     /translation="MKLLETNSDGQVYAGTCGGMLLSVFSNVFIEDLVRTIILAVVGA
                     VVSFVVSLVLKNFFKRRNR"
     gene            complement(4670..5086)
                     /locus_tag="VI413_07245"
     CDS             complement(4670..5086)
                     /locus_tag="VI413_07245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914454.1"
                     /translation="MCTFIIKSYRSGVVYSMPHFFILNKGNNSGKPLLAPCPNCFVIQ
                     FKCEEEKEQIYWLLYSLWQSKAFYPFLRGSVIPFVVLRDVKSCLLDGLNKVAENPAQF
                     EKAVAALRSLEVMEKQYKQNLLLITNAKHMLFHKYL"
     gene            5789..6058
                     /locus_tag="VI413_07250"
     CDS             5789..6058
                     /locus_tag="VI413_07250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914455.1"
                     /translation="MGLTRRRNEKHTIGKGLVENGMNEACEMEMSISRSRGVLKCMIE
                     MKVKWSIRGQREERTQLLEGNGAKMEIIYCKHMDKQLHVFYFLHN"
BASE COUNT         2106 a         1215 c         1367 g         1797 t
ORIGIN      
        1 cctatagagc cgagcgacaa actcaacgat ccgaacgaaa tccagttaat ccatgcacga
       61 accaacggat taaaacgacc attcgctaca aacgatgaat ttaatgaaag aattggtgac
      121 ctggttcgca aatctgtact cgtacaagtt accgaacacc ggttttatca actcaaatcg
      181 ctttctcatt cacagccata cctcatcccc gaagccattg acatgctaaa cgaaattggc
      241 taccgattcc agaagcgatt gcaggaaaag aaatacaaca actatagatt tcgtttaaca
      301 tcacttctca gaacagtaga aacacaaaac aacttatgtc atagaaatgg caatgccaca
      361 aaaggtctat cctgccattt atatgccaca acagttgaca tttcctacaa aaacttctac
      421 aacaccaaag ctgacagtat cgaggcaagc tacgaagcag tacaaacttt aactaaagta
      481 ttgattgaaa tgcgtaagga atgtaagtta ttagccgtac gggaacgcca tcaatcctgt
      541 tttcacatca ctgcagttct gtgtaaaccg ttgtcaataa agaaataaac tatcaaacaa
      601 aatacctttc aatgaatttt atcaaatttc aatttgattt tcttgtttaa aatttcgaca
      661 atatgaattt ttgattaact ttgcattcga ttaaaacaac gacttagtag ctcagctggt
      721 agagcaacag actcttaatc tgtgggtcga gggttcgaac ccctcctggg tcacgaaatg
      781 aaacgacagt ttcagtcaat atcaagacaa accattctaa atcattgatt tggagtggtt
      841 ttttctttta tacaaagcca ataaaagaca gttctcaacc accaaacgcc aataaatcgt
      901 taccaattca ttacctgttt ttctctatat acattaggta acgaattaac taatttgtcg
      961 tagctatttc catatttgtc agcagtttgt ccgctctact ttcatagata atatttattt
     1021 tcaacccata aattattatg ttatgaaatc aacttacaga gtacttttct acttgaaaaa
     1081 gaatgccatt caaaagaatg ggaagtccat tatcatgatc cgtataacaa tcaacggaga
     1141 aatcgcgcaa ttaagttcta agcttcaggt agatcctgat ttttgggacg taaagacagg
     1201 aaaggtcaaa ggacgggcag ccgaagccaa caacattaac agacagttgg acaatctaaa
     1261 atcttcaatt gataaggcat atacaaagca atttgacgaa tttggctatg ctgtccctga
     1321 aaaaatcaag aacactattt tggggataga tcgaaagaat aaaactcttc tggagtactt
     1381 cgatatgcac aacaatcagt atgctatgaa agtcggttat tctactacaa atgtaactta
     1441 tgaccgttat caacttttga gggaacggct tgaatctttc ctgaaagagc attacaatat
     1501 atccgatatt ccgattaatg aagtaactcc tgtcttttta gatagttttt atatctatat
     1561 ccgtaacaac cacaagagtg cgcacaacaa tgctatgaaa gccatgcaac ggttacggag
     1621 gatattttat ttcgctaaaa acacaggact taatatcccg gatcctttct ggaatttcaa
     1681 tatgaacttt gaaaccatgg aaagagactt ccttagccag aaggaaattg agactattca
     1741 atacaaacaa tttgcatcaa aaagagtcga acaagtaagg gatttattca ttttctgttg
     1801 ctatacagga ctttcatacg tcgatttatg taatttgaaa gaatccaaca tccataccgc
     1861 atttgacaat agcctgtgga ttatgagtaa acgtcagaaa acgaatgtgc actttaatgt
     1921 aaggctgctt aataccccac tacaaatact ggacaaatat aaggggagtc aaacggatgg
     1981 taagatacta cctattatct caaaccaaaa attaaatgaa tatctgaaag aaatagccga
     2041 tttatgcagc attactaaaa acctgacttt tcacatggcc agacattcat ttgcaacctc
     2101 gatagcgtta tcaaacggag tacccattga aacagtatcc aaaatgctcg ggcataaaag
     2161 tatcaagaca actcagattt acgcaaaaat aactgatata aaattgagta atgatatgca
     2221 aaaactgtct gagataattg ataaagagat agcatgttag acaaatgaga caatccaatt
     2281 ttagacaatg attaaataat atttatggaa ctacaactta tccaaaacaa aatttttgag
     2341 gtcagaggac ttcgtgttat gctggacttt gacctggcag aaatgtatga agtgaaaaca
     2401 aaagtactaa agcaagctgt aaagcgaaat atcagtcgct tccctcctga ctttatgttt
     2461 gaactgacaa agcaagaatg gaatgaactg gtcacaaatt gtgacctgtt ccctgaaagc
     2521 ctaaaacaca gttctgtgag ccctacagta ttcacagaac aaggagtagc catgctttcg
     2581 agcgtattac gaagtgaaaa agcaattgag gtgaatgtac aaattatccg ggcatttgtt
     2641 atattgcgcc aatatgcttt aggttatgtg gaactaaacc gtaagctaga agagtttatg
     2701 gtaggcacta atatgcaatt caatgatatt tatcaggcgt tgatggaact agcaagccaa
     2761 aaggaattgg aaagtaaacc gaggaatccg atcgggttta ttcaaaagga ggaatagaga
     2821 gaatttcgag gggttttgaa tgaaagctgt attgttgcac caatacggct ttttttcata
     2881 cactatgtag ggcgttgata tggacttgcc atacttcagc catacatgaa acactaaccc
     2941 gcaataaacg gggcaacctg ttcaattttc aatcctgtgt accggcagaa ttcgtcaact
     3001 gttacgaact ggtgttcttc tttttcgttg cgttctttta tcttagcaag caacaacctt
     3061 ccgtaacgtt cactctttcc ggtgatgcgt tggatatctt ttggatagat acaaatacgt
     3121 ttcacttcca tttctcttac tattttatgc aaaaatacaa attttatgga tataagaata
     3181 tgtccattta ggaaaaaacg gaaatgatag gcaaaggcgg aagtgtctgt gttcgaaaat
     3241 gatatttgtg aatatacttt tgtccgtata attttaaaaa catagtatta tggcacgaca
     3301 aaaaagtatt ctaaaattac aaggaaccat cggtgggatt tcgttctaca aatccaaaga
     3361 tggttatctg gcccgggaaa aaggtggtgt agatgcttcg cgaattgcga atgatccggg
     3421 atttgcccga acccgtgaaa acggagcaga gtttggaaat gcagcttcag caggtaaatt
     3481 attgcgcgac actttgcgag ctcttgcaaa agatgcgtct gacggacgtg taaccgcaag
     3541 gcttactcag gttatggcgc aaattaaaaa catggacgaa gcaaacgccc gtggtgaacg
     3601 tagtgcagct gaaggcatgg ccaaagatga agctaaagct ttgttgattg gtttcaactt
     3661 caatgtaaat gcagctcttg gtacagtttt gtacaaagca tttgaagtgg acactgaaac
     3721 cggtgaaatt aaaattgcgg cactgacccc acaaaaagat attagtttgc ctagcggggc
     3781 atctcatatc attttgaaaa gtggttttgc cagcattaat tttttgaccg gggaatcgga
     3841 aatgattgtt tcggcaccaa tgcgccttgc ggtcagtgct gaagctcagg ctgtgtcgtt
     3901 gaagcctgca acagtaccga caattgaggg aactcatctc atgcttttgt cgattgactt
     3961 tgttcaatcg gtgaacaatg tcgactattc tctgaataac aacgcttaca acgtgttggc
     4021 tattgttaat gtagagtaaa acctcacacc taacccctct ccgtgcggag aggggaacta
     4081 gagcaggact taaattctta gaaaggtaga atctaaattt taatacaaga tttatgaaaa
     4141 cagagaataa tgtaaaagca gttaacccca acaacatgag tgttgtagaa cgggtaaaag
     4201 ctccgactcc taaattcttc aaaatattgc gtgcaattgg attgggtttg gcagccgttg
     4261 gggtgcaata ctggccaccc ctgttgcgat tcccgcagca ctggttacga ttgctggtta
     4321 cgttgcattg gcgggcggta taatgaccgc agtaagtcaa acggcggttg attcggattc
     4381 taacacgagc aacaatgaaa ctccttgaaa caaacagcga cggccaagtg tatgccggta
     4441 cttgcggcgg tatgttgcta tcagtgttta gcaacgtgtt tatagaagat ctggtcagga
     4501 ctattattct tgccgttgta ggcgctgttg tgagttttgt tgtttcattg gttttgaaga
     4561 acttcttcaa gcggagaaac cgctaaaaaa ctactacttt ccggtttggt aaccttttgt
     4621 agtagtgaag cctcccccaa cgggaggcat ttttttgcat atgagtgaac tataaatact
     4681 tatgaaacag catatgcttg gcattggtga ttaaaagcag gttttgttta tattgctttt
     4741 ccatgacttc cagactgcgg agagctgcta cggctttttc aaactgagcc gggttttcag
     4801 ctaccttatt taaaccatcc aaaaggcaag actttacatc cctgagcact acaaacggaa
     4861 taaccgaacc cctcaaaaac ggataaaagg ctttagactg ccacaagcta tacaacagcc
     4921 agtagatttg ttctttttct tcttcgcatt tgaattgaat tacaaagcaa ttcggacagg
     4981 gagctaaaag cggcttgccg ctgttatttc ctttgtttaa aatgaaaaaa tgaggcattg
     5041 aataaacaac gccagaacga taagatttga taataaaagt acacatgacc ctgggattaa
     5101 atggtaaaaa ctaaaagcag ctactgcgcc cgtaaataat tttcaccccc agaaaagaga
     5161 aagaaaaaaa gaagaagaaa aaaaagaaaa atatagccat cttcttaggc ggacggattg
     5221 ggctgtcaag gtttttggga aaaatactac ctgaagcttg cgtaagtgtg gagatttttt
     5281 ctcaaaacac gaagtgcctg acctttactg cccaaagcgt tgatttgtgt tggccgcctt
     5341 atctttgcta gattttttat ttttttgttg gtaaatatta tactcaaaaa gtccttgttg
     5401 tatttgtctt tctgaatcct tttcgaaaaa gaaaccattc ctcatcacaa ccaaaaggat
     5461 tctttttcat tggggcttac tcgccgcaga aaataaaaca taccgttgga aatgcgaggg
     5521 aaaagagctt gggcagtgac tgactgaatt aatggagctt gcggaatgga aaggaaggag
     5581 actaccgaag ctgtggggtg ctgaggtgaa tgcatgaaat gaaagtagaa tgaaatgcag
     5641 gggttcggag tgaggaacga acgtagttcc cggaatggaa tgggctggaa tgaatgcact
     5701 gaccgcaagc acatggataa accaacccgg aatgctttta ttttctgcac aactaatggg
     5761 aggtggggaa aattgaggac attgttttat ggggctaact cgccgcagaa atgaaaaaca
     5821 taccattgga aaagggcttg tggaaaacgg aatgaatgaa gcttgcgaaa tggaaatgag
     5881 tatttcccga agccgtgggg tgctgaagtg tatgattgaa atgaaagtga aatggagtat
     5941 caggggtcag cgcgaggaac gaacgcagct cctggaaggg aatggagcga aaatggaaat
     6001 catatactgc aagcacatgg acaaacaact acatgttttt tattttctgc acaactaatg
     6061 ggtggtgggg aactcttgag gttcttcggg cagcgaagcg gggcaaaagc gttgatcttt
     6121 gtgcggctat tatatataat gtcagcttat gtgctttttt atcctttatc aacattagaa
     6181 tttagtccct tataaaaaac gcacataact aagcattatg tatatatagc ttcgagttgt
     6241 tttttttctg gcgcatttca gcacggtggt ggcggttgga gtgcctgatt tcttttttgc
     6301 aacccccagc ccctttggga agggggtact gcaaaaagtg tgacagaaaa aaacaacagc
     6361 agggttgatt gcgcggaggc aggcaaaaag actatgcaag cccagaggta cgaggggtga
     6421 ggatttttgc ctgccgggga ttgccccggc ggagctgccc gtaattgact atcaggtgaa
     6481 aacct
//
LOCUS       DATDNM010000427         4039 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_375616, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000427 DATDNM010000000
VERSION     DATDNM010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4039
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375616"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1055)
                     /locus_tag="VI413_07255"
     CDS             complement(<1..1055)
                     /locus_tag="VI413_07255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914456.1"
                     /translation="MKRLFLILILFVTVALNAQQLASIYKGGDIKLVADPGYAQNVSW
                     DKQFYDFDQTAWGKPVGTFKQIVVAPDGSVFMSHRTRHSISKFDKNGNFVKEFGKKGG
                     KSPADFIYMPSVQGILDGKYLYTTAVDGRMHFFDLNGKWVRTIKLKYMPLGTMPMKGG
                     KIAIIGHVPGANGTKHIVSLLNYSDGKEKIISSTFELYSSSNEKNITINPYFYKDKDG
                     KEQHIGQWIKCSLPFSHPSYYRVRFATNSAGNLVAAYPETGEIAIFDNTGKKLRQFKA
                     DLKPEVITKEDREEYYQNAAESLTKLEEDVAKKTTDKEYWDSYLTQYKQQLEKFRDPA
                     NYPANLPYFSEMLVDSE"
     gene            complement(1067..1528)
                     /locus_tag="VI413_07260"
     CDS             complement(1067..1528)
                     /locus_tag="VI413_07260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914457.1"
                     /translation="MRCLTDKQMQHLIDGELSANQMDKYKSHIDTCTYCAEKYSDRKE
                     LSASIKTLINETAISPERIPEFRIPAKQIQQHVKVRRIPLWAKVAAVLVPAFVGWKMY
                     NKPQEDFKPSAESIQMYEMCNGVDANTAFQENMIITTVTDENGKVVECTTN"
     gene            complement(1509..2015)
                     /locus_tag="VI413_07265"
     CDS             complement(1509..2015)
                     /locus_tag="VI413_07265"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6914458.1"
                     /translation="MKQFNDIYQQHYPAVFRLVSKFTLGSHETDDIVQDVFLKLYLQM
                     EASVVVLYPKTWLYKVATNACLNTLSRNKETCSIENIGHPETNVADSVDLKIENDEQQ
                     KMMQKALLALKENERMIVILYSEGLSYKEIAEVSGVSFSSVGKSLSRSLQKLKPLLKN
                     QYYEMLNR"
     gene            complement(2155..>4039)
                     /locus_tag="VI413_07270"
     CDS             complement(2155..>4039)
                     /locus_tag="VI413_07270"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter-associated beta strand
                     repeat-containing protein"
                     /protein_id="HEY6914459.1"
                     /translation="ADSAKVLFSNSAVNTIEITEPVAIKTMVVNADSSYTFQGTSFIS
                     GTGSVNKTGSGKLSLLTDNTYKGATVLWNGTLEINKLANGGLSSSIGASQNYDFNLVL
                     KGGKLVYTGATVATDRNINLDGNAEISISNSAAVVTMGGLLSGPGSFTKNGPGKLCFK
                     GVNTYEGQTTISEGTLELIGVPVINNGLGTSNSLKLDGGTFKTSGGSNTVDEIYPMDI
                     YVTEGKTSGFEPYRNCQIKSKVSGSGTLNFNISYVREYLTGDWSQFSGTVNANGIGTT
                     TDGNQFMLNNGNGIPNARVVTSGNTKIVCWKNGSTMYLGGLAGPSGTYLSGSDKVNNA
                     ATMTWIVGGAGTNETFNGVINNECSNKSYKGINSIVKDGKGYWKLTGANIYAGTTTVK
                     NGMLIVNGVQTGTGKVTVMTGATLAGKGTMPAVTEVQSGGMLQPGDPSVGTINMGTLT
                     VGSLNLLAGSQVNMEINRPLSIVDKIVSTGAVTFGGTLNLTLTGTPQAGDQFILFTGT
                     SYSGSFSQIIPATPGDGLKWTFANGVLKVDQVSGIESIENSKVKIYPNPVSDRTEISL
                     DKVYNNIVVTVESANGTMLQTSHFSGLSQMNLDLSALPKGFYIVGVKGDNELIKSSKI
                     MKK"
BASE COUNT         1085 a          930 c          738 g         1286 t
ORIGIN      
        1 ttttcggaat ccaccaacat ttcagagaaa tacggcaggt tggccgggta atttgccggg
       61 tcacgaaatt tttccaattg ctgtttgtat tgagtcagat aactatccca atactccttg
      121 tcagttgttt tttttgccac atcctcttcc agtttcgtta aactctcagc tgcattttga
      181 taatactctt ccctatcttc tttggtaata acttccggtt ttaaatctgc tttaaactgc
      241 cgcagtttct ttcctgtatt atcaaaaatg gcaatctccc cggtttccgg atatgctgct
      301 accagatttc cggcactatt ggttgcaaac cgaaccctgt aatacgatgg gtgcgaaaac
      361 ggcaaactgc attttatcca ttgcccgatg tgttgttctt tcccatcctt atctttataa
      421 aaataagggt taatagtaat attcttttcg ttggagctgg agtaaagctc aaaagtagaa
      481 ctgataatct tctcttttcc atcggaataa ttcaacaacg aaacgatatg ttttgtacca
      541 tttgcacccg gcacatggcc tataatagct attttgcctc ccttcatcgg cattgttccc
      601 aacggcatat attttaattt gatagttctc acccatttgc cattcaaatc gaaaaagtgc
      661 atacgtccgt cgactgctgt ggtataaagg tatttgccat ctaaaattcc ctgcacggaa
      721 ggcatataaa taaaatcggc aggactttta cctccttttt tgccaaactc ctttacgaaa
      781 ttaccgttct tatcaaactt agaaatggaa tgccgtgtgc gatgactcat aaaaaccgaa
      841 ccatcgggcg ccaccacaat ttgcttgaag gtgccaacag gttttcccca ggcagtttgg
      901 tcgaaatcgt aaaactgttt gtcccaactc acattttggg cataaccggg atctgccacc
      961 agtttaatat cgccaccttt ataaatggag gccagttgct gggcgttcaa tgccacagta
     1021 acaaaaagta tcaaaattaa aaataagcgt ttcataatat ttagtattaa ttggttgtac
     1081 actcaactac cttcccattt tcatcagtga cggttgtaat aatcatattc tcctgaaaag
     1141 ccgtgttggc atccactccg ttacacattt cgtacatttg aatgctttcg gcacttggtt
     1201 taaaatcctc ctgcggctta ttgtacattt tccaaccaac gaatgccgga acaagcaccg
     1261 cagccacttt cgcccaaagc ggaattcttc tgactttcac atgttgctga atctgttttg
     1321 cgggaatccg gaattcagga atccgttccg gcgatatagc cgtttcgttt atcagcgttt
     1381 ttattgaggc agataattcc tttcggtcac tgtacttttc ggcacaataa gtacacgtat
     1441 caatatggct tttatattta tccatttgat tggcggacaa ttcgccatca atcaaatgct
     1501 gcatttgttt atcggttaag catctcataa tactggtttt taagtaaggg tttaagtttt
     1561 tggaggcttc gggaaaggct cttgccaacc gaactaaagg aaactccgct aacttcggca
     1621 atttctttgt acgaaagtcc ttcggaatag agaatcacta tcattcgttc attttctttc
     1681 aatgcgagta acgctttttg catcattttt tgttgttcat cattttcaat tttcaaatcc
     1741 acagaatcgg caacattcgt ttccggatgt cctatatttt caatggaaca ggtttcctta
     1801 ttcctgctca gcgtgttcag gcaagcattc gtagctactt tataaagcca tgtcttcgga
     1861 tacaggacca ccacgcttgc ctccatttgc aaatacagtt tcaggaaaac atcctgcaca
     1921 atatcatcag tctcgtggct gccgagtgta aacttcgaca ccaaacggaa aaccgccggg
     1981 taatgttgct gatatatgtc gttgaactgt ttcaatgaat tgtgatttta ttaatagaca
     2041 cacaatgtat gaattttgtg acaaaaaaga aaaaataatt agaaaataat tagcttaaaa
     2101 caaagaaggc ctcacttaac gtgaagcctt cttgtactta tcagtaataa aattctactt
     2161 tttcattatt ttcgagcttt taatcaattc attgtcgccc tttacaccaa caatatagaa
     2221 accttttggc aaagccgaca aatccagatt catttgacta agtcctgaaa aatgtgaagt
     2281 ttgaagcatt gttccattgg cagactcaac agttacaaca atgttattat acactttatc
     2341 taaactaatc tctgttcggt cggaaacagg atttggatag atttttactt tcgaattttc
     2401 gatgctttca attcccgaaa cctgatcaac tttcaatacg ccgtttgcaa atgtccattt
     2461 caagccatcg ccgggagttg caggtataat ctgactgaat gagccggaat atgaggttcc
     2521 ggtaaacaaa atgaattgat cacctgcctg tggagttccc gtcagggtca gattcaacgt
     2581 tccaccaaaa gtaactgcac cggtagaaac aattttatca acgatagaca acggacggtt
     2641 tatttccata ttaacctggc taccggccag taaattcaac gaacccactg tcaaagtccc
     2701 catatttatt gtcccaaccg aaggatcacc gggttgaagc attcctcccg actgaacttc
     2761 ggttacggca ggcattgttc cttttccggc caatgttgca cctgtcataa cggttacttt
     2821 tcctgttccg gtttgtacac cgtttacaat caacatgccg tttttcacag tggttgtacc
     2881 ggcataaata tttgctccgg tcagtttcca gtaccctttt ccatctttta caatggagtt
     2941 aatgcctttg taacttttat ttgaacattc attgtttata actccgttga atgtttcatt
     3001 ggttccggca ccacccacaa tccaggtcat agtagctgcg ttattgactt tgtcagaccc
     3061 cgaaagatac gttcctgaag gtccggccaa ccctcccaga tacatggtgc ttccattttt
     3121 ccagcaaaca attttagtat tacccgaagt taccacgcgc gcattcggaa ttccgttacc
     3181 gttattcagc ataaactggt ttccatctgt agtagtgcca atgccatttg cattcaccgt
     3241 tccgctgaac tgcgaccaat cgccggtgag gtattcccga acgtaggaga tattgaagtt
     3301 caatgttccg ctaccgctta ctttactctt gatctggcaa tttcggtaag gttcaaatcc
     3361 acttgttttt ccttcggtta cgtaaatatc cattgggtaa atttcgtcaa cagtattgga
     3421 accgccactg gttttgaaag taccaccgtc cagtttgaga ctgttcgaag tccccagacc
     3481 attattgatt accggaacgc caatcagttc aagtgtaccc tcactaattg ttgtttgacc
     3541 ttcgtaagta tttacaccct taaagcacag cttgccggga ccatttttag taaaactgcc
     3601 aggaccggag agtaaaccac ccatcgtaac aactgctgca ctattgctta ttgatatttc
     3661 ggcatttcca tccaaattga tattgcggtc ggtagcaact gtagctccgg tgtaaacgag
     3721 tttgccccct ttaagcacca aattaaaatc gtagttttgc gaagcaccga ttgaacttga
     3781 aagcccgccg ttagccagtt tatttatttc caacgttccg ttccaaagta cggttgcacc
     3841 tttgtaggtg ttatcggtca acaaagaaag ttttccactt ccggttttat ttaccgaccc
     3901 tgtgccggaa atgaagctgg ttccctgaaa ggtgtacgaa ctatcggcat tcactaccat
     3961 ggttttgata gccaccggtt cagttatttc tattgtattt accgccgagt ttgagaataa
     4021 tactttagca ctatctgca
//
LOCUS       DATDNM010000428         2763 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1336855, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000428 DATDNM010000000
VERSION     DATDNM010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2763
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1336855"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..451
                     /locus_tag="VI413_07275"
     CDS             119..451
                     /locus_tag="VI413_07275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914460.1"
                     /translation="MIQTNTTKMLFTVGGVLTVIGSIIKLFDIRYAPYVFSAGAAFLI
                     YIQLKHLLDNRKSETREKRLSWNGLLSSLLLGLAAYFMFTGSNTWVVAVLIYSLSSLF
                     LSFRGNVK"
     gene            complement(548..1153)
                     /locus_tag="VI413_07280"
     CDS             complement(548..1153)
                     /locus_tag="VI413_07280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HEY6914461.1"
                     /translation="MKNLSLILNAVLAIAVVILFWLVLGTKSSPVAQQLISGKGTITK
                     GKLPIAYINVDSLLLHYQFAKDANESLIKRQEDSRLTINTRARQLQTEMGEFQRKLEN
                     NAFLSRERAEQEQLRLQKKQQELQELDGKLSQQLLQVQQKMSEELRDTINKFMKEYNK
                     DNKYEIIISNTSNDNVLYAAKSYDITAEVTKLLNERCASKK"
     gene            complement(1421..1996)
                     /locus_tag="VI413_07285"
     CDS             complement(1421..1996)
                     /locus_tag="VI413_07285"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018074836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEY6914462.1"
                     /translation="MKFSLPELPYAHNALEPIISEKTISFHYGKHHLTYVNNLNGLVE
                     GTEFENSDLDTIVKKSEGPMFNNAAQIWNHNFYFLSLTPNKGTAPSQSLAKAIDSAFG
                     SLDAFKAEFNKAAISVFGSGWAWLVKDADGKLSIAKESNAGNPITRGLTPLLTFDVWE
                     HAYYLDYQNRRADYVAALWDLVDWNVVSARY"
     gene            2218..2676
                     /locus_tag="VI413_07290"
     CDS             2218..2676
                     /locus_tag="VI413_07290"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEY6914463.1"
                     /translation="MRRTIRLIIALAIVISATTACKTKQKIAEVPAGANIEATTSTKS
                     NVTQQTAPAENVTNEAEVTRNESFSLVEGESSALNNKYHVVVGSFSNQSNAKGLQTLL
                     KSEGNKALVVLNEKGMYRVLISSYNDYNQAHARIKQISERFPGAWVLVKK"
BASE COUNT          867 a          449 c          508 g          939 t
ORIGIN      
        1 tcaaagctac cagacaaaag aaaaacgaat tacagtcgag tgacgaaaat ctggagaaat
       61 ttgcacgcga gcattattac atgaagaaaa aaagcgaaga tatttttata attaaagaat
      121 gatacaaaca aatacgacaa aaatgctttt tacggtaggc ggtgtgctta cagttattgg
      181 aagcataatc aaacttttcg atatccggta tgcaccttat gtattttctg caggggcagc
      241 atttttgatt tatatccaat taaaacatct cctggataac cgaaaatcag agacccgcga
      301 aaaacgactt tcctggaatg ggttgttgtc aagtttattg ttggggttag cagcctattt
      361 tatgttcacg gggtcaaata cctgggtggt tgctgttctt atatattcac tctcgtcttt
      421 atttctttct ttcaggggaa atgtaaaata agtaaccgat aaaaaatatc cagcatcaaa
      481 aaaggcaaac tcaatactga gtttgccttt tttgatgctg gattgcaatt gaagcatcaa
      541 ttgcagatta tttttttgaa gcacaacgtt cattgagcaa ttttgttact tcggcagtta
      601 tgtcatagct tttagctgca tataaaacat tatcattgga agtgttactg ataataattt
      661 cgtatttatt gtctttgttg tattctttca tgaatttgtt gatggtgtcg cgcagttctt
      721 cgctcatttt ttgttgaacc tgaagcagtt gttgacttaa ttttccatct aattcctgta
      781 attcctgttg ttttttctga agacgaagtt gttcctgttc agcacgttcg cggcttaaaa
      841 atgcattgtt ttcaagtttg cgttgaaatt cacccatctc agtttgcaac tggcgagcgc
      901 gtgtattaat agttaagcgg gaatcttctt gtctttttat caacgattcg ttggcgtctt
      961 ttgcaaattg gtagtgcaat aacaatgaat cgacgtttat ataggcaata ggtaatttcc
     1021 cttttgtaat ggttcctttt ccgcttatca gttgttgggc tacagggctg gatttagttc
     1081 ccagtactaa ccaaaaaaga attacaacgg caattgccaa tacagcattt aaaatgagtg
     1141 ataagttttt cattagcttt tctattaaat aattggatat ctatgttttt acagattgaa
     1201 ataatgcttt tttcgaaaat cagactgcaa agataatttt tttaggacac aacgatacta
     1261 accagcgtca atttttagta aaatgaatgt ttcattatga tttttaactc atttttaaat
     1321 attgatggca tttcagaaat aattaaactc taaattcagg cataaaaaat ccggaaagaa
     1381 atatatttca atccggattt aaatttttta cctgtaataa ttagtaacga gcagaaacta
     1441 cattccagtc aactaaatcc cacaatgcag ctacataatc tgcgcggcgg ttttggtagt
     1501 cgagataata agcatgttcc catacatcaa aagtgagtag tggagttaag ccacgtgtaa
     1561 tcgggtttcc tgcattgctt tctttggcaa ttgaaagttt accatcagca tcttttacca
     1621 accatgccca accagaacca aatacactta tggctgcctt gttgaattca gctttgaatg
     1681 catccagtga accgaaagca gagtcaatgg cttttgcgag gctttggctt ggtgcagtgc
     1741 ctttgtttgg agtcaatgaa aggaaataaa agttgtggtt ccaaatttga gcggcattgt
     1801 tgaacatcgg accttcggat ttttttacaa ttgtatccag gtctgaattt tcaaattctg
     1861 ttccttctac taatccattc agattattta cataggtcag atgatgtttt ccatagtgaa
     1921 aactaatcgt tttttcgctg ataataggtt ctaatgcgtt gtgtgcataa ggtaattcgg
     1981 gcaatgaaaa tttcatgatt ttgttgtttt atatgttaat aatcgatatg attttttatt
     2041 ttatacctct taaacgtcgt ttctatatat tttgtttgac agacgaggtg ttttttttac
     2101 aaaaaaataa aagacatttg gtttagtgca tttttcttat catctttgta gtcaaaatag
     2161 ccatttttta caatttattc gttaattttg cagtcaaata taaataaata aattaatatg
     2221 agaagaacaa ttcgattgat tattgcatta gccattgtga tatcggctac aactgcctgt
     2281 aagacaaaac aaaaaatagc agaagttcct gcaggcgcca atattgaagc aactacttca
     2341 acaaaatcaa atgtaacaca acaaacagca ccagctgaaa atgtaactaa tgaagcagaa
     2401 gttacccgta acgaaagttt tagtcttgtt gagggtgagt caagcgcatt aaataacaaa
     2461 taccatgttg tggttggaag tttttctaac caaagcaacg ctaaagggtt acaaacttta
     2521 ttgaaatcag aaggaaacaa agcacttgtt gttctaaatg aaaaaggcat gtatcgcgta
     2581 ttgatttctt cttataatga ctataatcaa gcgcatgctc gtatcaaaca aatttcggaa
     2641 cgtttcccgg gagcatgggt gttggttaaa aagtaactac attctgttga ttagaataat
     2701 gaaaaggagg aataatgaaa aggagggcta agctctcctt ttttatttgc cagcaatgaa
     2761 ttc
//
LOCUS       DATDNM010000429         2263 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1016456, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000429 DATDNM010000000
VERSION     DATDNM010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1016456"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..247)
                     /locus_tag="VI413_07295"
     CDS             complement(<1..247)
                     /locus_tag="VI413_07295"
                     /EC_number="2.3.1.275"
                     /inference="COORDINATES: protein motif:HMM:NF014690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043772 - acyl-phosphate
                     glycerol-3-phosphate acyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate acyltransferase"
                     /protein_id="HEY6914464.1"
                     /translation="MNATFQISLILIAYLSGSIPFGYLFTRKFTGKDIRGFGSGNIGS
                     TNVRRVAGAKVASMTQLCDMLKGLLPVGAILLVQYTKC"
     gene            complement(244..981)
                     /locus_tag="VI413_07300"
     CDS             complement(244..981)
                     /locus_tag="VI413_07300"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEY6914465.1"
                     /translation="MHFILNNIWLILFVAWGLPLSIYRSKFRKIVYQTDSWVINIKPV
                     FLKEIKGLFGNIYPDNHSYHKFRNFYRFYLAIYFVLFIFYFSMSDNINSKVIGVGSTV
                     PSFSLKDQNGKIFELDSVKGKNNLVIYFYPKDDTPGCTREACSFRDQFEVFKQHDALI
                     IGISAQSVESHLEFSKKHRLNYTLLSDDDNGVRRLFGVPTNLFGLLPGRVTYVVDKAG
                     KVVFMFNSQMNAEKHIEEALRILKELK"
     gene            complement(999..1772)
                     /locus_tag="VI413_07305"
     CDS             complement(999..1772)
                     /locus_tag="VI413_07305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HEY6914466.1"
                     /translation="MIPLYVQGLLLILGMMSTLWIVSIILKNVSIVDLFWGLGFVAVN
                     AFYYISTDVTSAKTVLLMLVTVWGLRLSIYLAWRNIGKGEDFRYKEFRKKYGEKNYWW
                     ISFFQTFLLQGILMWIISMTLYGVNQHAASQTLTVIDYMAVLVWFVGFIFEARGDMQL
                     ARFKKDVSNKGKVLNIGFWHYTRHPNYFGDSAVWWGYGLLCLSAGSYALLAGSIIMTL
                     LIIKVSGVALLEKSLKVQKPEYADYIQRTSSFIPWFPKK"
     gene            complement(1793..>2263)
                     /locus_tag="VI413_07310"
     CDS             complement(1793..>2263)
                     /locus_tag="VI413_07310"
                     /inference="COORDINATES: protein motif:HMM:NF014679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEY6914467.1"
                     /translation="LVLRIAQSIETGLAPAEIVESVEKWKTNAKIFVSVKDLKYMIKG
                     GRVSKGKGFIANLLNINPIVSMDETGKSVLFGQTFSQQANINKVMKHVRKICAGKSVW
                     NYIVLHAHNQAGAEIYVQKMLELTGKSPVSVVDISPVIGMNAGNGTIAVSLLFD"
BASE COUNT          751 a          503 c          352 g          657 t
ORIGIN      
        1 aacacttcgt atattgcaca agcaggattg ctcccaccgg caaaagccct ttcagcatat
       61 cacaaagctg tgtcattgat gctactttag ctccggccac acgtcgtaca ttggtagagc
      121 caatattccc acttccaaac ccgcggatat cttttccagt gaatttgcgg gtaaaaagat
      181 agccaaaagg tattgaacct gacaaataag ctatcaaaat cagggatatt tgaaacgttg
      241 cattcatttt aattccttca gaattcgtaa tgcctcttca atatgtttct cagcattcat
      301 ttgggaatta aacataaata caactttacc ggccttatca acaacataag ttacgcgacc
      361 cggaagtagt ccgaacaaat ttgttggaac accaaacaat ctacgcacac cattatcatc
      421 atcgctcaaa agcgtataat tcaaccgatg tttctttgaa aattccaaat gactttccac
      481 cgactgggca ctgataccta taatcaacgc atcatgttgc ttgaaaacct caaactggtc
      541 gcgaaacgaa caagcttccc tggtacagcc gggagtatca tctttgggat aaaaatagat
      601 taccaaatta tttttgcctt tcacagagtc gagttcaaaa atcttcccgt tctgatcttt
      661 cagcgaaaat gatggaaccg tactccccac accaattact tttgaattaa tattatcact
      721 catactaaaa taaaaaatga ataaaacgaa atatatagca agataaaagc ggtaaaagtt
      781 tctgaatttg tgatacgaat gattatccgg ataaatattt ccgaacaaac ccttgatttc
      841 tttcagaaag acaggcttta tattgataac ccaactatcg gtttgataaa caattttacg
      901 gaatttactg cgataaatac tcaggggcaa gccccatgct acaaaaagaa ttaaccagat
      961 attattcaga ataaaatgca tagttcaata ttttgtgttt attttttggg aaaccaggga
     1021 ataaatgaac ttgttcgctg aatataatct gcatattcgg gtttttgaac ttttaatgat
     1081 ttctcgagta aagctacccc tgatactttt ataatgagca atgtcataat tatagacccg
     1141 gctagcaacg catagcttcc ggccgataag caaagcaagc cataccccca ccatactgcc
     1201 gaatcgccaa aataattagg gtggcgcgta taatgccaga aaccgatatt caacactttt
     1261 cctttgtttg acacatcttt tttaaatcgt gctaattgca tatcgcccct tgcttcaaat
     1321 ataaatccga caaaccacac aagcacagcc atataatcaa taacggtcaa cgtttgagaa
     1381 gcagcatgct ggttgactcc atataaagtc attgaaataa tccacatcag aataccctgt
     1441 aacaggaaag tctgaaaaaa actaatccac cagtagtttt tctctccata ctttttccgg
     1501 aactctttgt atcggaaatc ctctcctttg ccaatatttc tccacgccag atatattgac
     1561 aaccgaagtc cccaaacagt aacaagcatc aaaagaaccg tttttgccga tgtaacatca
     1621 gtactgatat aataaaatgc attgacagcc acaaaaccca atccccaaaa gagatcgacg
     1681 atacttacat ttttgagaat tatactgaca atccataaag tggacatcat gcctaaaatc
     1741 aggagcaggc cctgaacgta taaaggaatc ataatttata tttaaattgt tattaatcaa
     1801 acaataatga aactgcaata gttccgtttc cggcattcat tccgattaca ggtgatatgt
     1861 caactaccga aacagggctt ttacctgtta gttccagcat tttctgaaca taaatttcag
     1921 caccggcttg attgtgagca tgcagtacaa tatagttcca cacagatttt ccggcacata
     1981 tttttcgcac atgcttcatt accttattta tattggcctg ctgactgaaa gtttgtccga
     2041 acaatacaga ctttcctgtt tcatccatag atacaatagg attaatattc agtaaattag
     2101 caataaagcc cttccctttg gaaacacgtc cgccttttat catatatttc aggtctttta
     2161 cactgacaaa tatcttagca ttcgttttcc atttctcaac agactctaca atttcagcag
     2221 gtgctaaacc ggtttcaatg gactgagcaa tgcgcaacac caa
//
LOCUS       DATDNM010000430         3219 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2085360, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000430 DATDNM010000000
VERSION     DATDNM010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3219
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2085360"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2865)
                     /locus_tag="VI413_07315"
     CDS             complement(<1..2865)
                     /locus_tag="VI413_07315"
                     /inference="COORDINATES: protein motif:HMM:NF019136.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6914468.1"
                     /translation="MKKITLAILFLSISFPFVAKTYTQFSHYSVKEGLSEINVLCMMQ
                     DKKGQMWFGTFDGLNKFNGYTFKTYKSNPGQLFGLENYRVDLIREDNDGYLWIQTYDG
                     RVYRFDPRTENFLQVPQCKEEFKSYKVNLENIYTFADGSIWLTGGGDGCFRIQNSTEN
                     DDIKIWHFNEGNELLSSNKINKIFQDKHKNAWVLTDNGLNIFKPNNLKPVQLFKEKTG
                     GAFYSITESGNFIWIGGEHGKIRIYNTRKETFDGITSPCESSVLDIKALNANQLFILS
                     NLSGFFLYDINQQKFTPFTKSNGSGVIGDVFYSCYMDKQQNIWIETDNPSVVYFQTRE
                     QKVNNFNKKAVNSSQFAPAPNFFVIEDKYGNIWVHPRFGGFSLYNKALNSLQAFHNDP
                     DSPDRKFSNTMHSAFSDKQGNLWLCPYSHGIEKVVFSESAFSFYKPKPAEMTSASNEI
                     RSLYQDKENRIWVGAKNGSVTIFDQDNNRIGELCEDGRIAGGKPLKASIYTIYSDNNG
                     TIWLGSKGSGLYKLENTGKPTAPRFKITNYRYNPNDIYSLSSNNVYSVLEDHLHRIWI
                     ATYGGGINMLQEENGVTQFISARNKLKNYPMTQCSRTRCLTEDAKGRIYVGTTGGMVV
                     FGNSNIRPENISFTLFAHDPANPKTISGNDVHNILTSRNGKLYLAIFGGGLDVLNEEL
                     DLKKKQEFKSYMVGNGAPSNVIFTLKEDVKGNIWFSTQTEIGKFTPSEERFDTYQPLN
                     DNAYSFAEASVCQTRQGNLAYGTTEGFVLFNPLKAAKSDYKPRIVLTNFQLFNKTMEV
                     GVDGSPLKHVIDETEELKLNHEQNIFSIGFAALDYTNPQNIQYAYKLDGFEKEWNYVH
                     DQRIATYTNLPKGEYVFRVKSTNAEGVWVDNERSITIVKQPSFWDSYWGYLFYFIIIL
                     GLAALAIYILSTIFRLKTDVEVEHRITNLKLRFFTDISHEL"
BASE COUNT          870 a          629 c          671 g         1049 t
ORIGIN      
        1 cagctcgtga gagatatcgg taaaaaagcg cagtttgagg tttgtaatcc gatgttctac
       61 ttccacatct gttttcaggc ggaaaattgt cgatagaatg tatatggcta aagctgccag
      121 tcccagaata ataatgaaat aaaacaaata tccccaatac gagtcccaga acgaaggttg
      181 tttgacaatc gtaatgcttc gttcattatc aacccaaaca ccttcggcat tggtcgattt
      241 tacgcggaaa acatattcgc ctttcggtaa attggtgtag gtggcaatgc gttggtcatg
      301 cacgtagttc cattcttttt caaatccatc cagtttatag gcgtattgaa tattttgcgg
      361 attggtatag tctagtgctg cgaaaccgat ggagaaaata ttctgctcgt gattcagttt
      421 cagctcttcc gtttcgtcaa ttacatgttt tagcggtgaa ccatcgacac caacttccat
      481 cgttttgttg aacaactgga aattagtcag cacaatgcgt ggtttataat cactcttggc
      541 agctttcagc ggattgaaaa gaacaaatcc ttcggtagtt ccgtaagcca gattgccttg
      601 tcgggtctgg caaaccgaag cctcggcgaa gctatatgca ttatcattaa gtggctggta
      661 ggtgtcaaac cgttcttcgg aaggagtgaa tttccctatt tcggtttgag tggagaacca
      721 gatatttcct tttacatctt ctttcagtgt aaaaataaca ttggatggag ctccgtttcc
      781 aaccatgtac gatttgaatt cttgtttctt tttcaaatca agttcctcat tcagcacatc
      841 cagtccgcca ccaaagatag ccaggtaaag tttcccgttg cgggacgtca ggatgttgtg
      901 gacatcgttt ccggaaatgg ttttcgggtt ggccgggtca tgtgcaaaaa gagtaaaact
      961 gatattttct ggcctgatat tgctgtttcc aaaaacgacc attcctcctg ttgttcccac
     1021 ataaatacgt cctttcgcat cttctgtgag gcagcgtgtg cggctgcact gggtcatcgg
     1081 atagttttta agcttgttgc gggcgcttat aaactgagtg acgccgtttt cttcctgcaa
     1141 catattgatt ccgccaccat acgtagcaat ccagatgcgg tgcagatgat cttcgagtac
     1201 cgagtatacg ttgttggaac ttaagctgta aatatcattg ggattgtacc ggtagttggt
     1261 tattttgaaa cgtggggctg ttggttttcc ggtgttttca agtttgtaca gcccgctgcc
     1321 tttcgaccca agccagatgg taccgttatt atcgctgtag atagtataaa tggaagcttt
     1381 aagtggtttg cctcctgcaa tgcggccatc ttcgcacaat tcaccaatgc ggttgttgtc
     1441 ctgatcgaat atggttacgg atccattttt ggcacctacc catatcctgt tttccttatc
     1501 ctgatataag gagcggattt cattgctggc tgaggtcatt tcagcaggtt ttggtttgta
     1561 gaagctaaat gccgattcgc tgaaaaccac cttttctata ccatgagaat aaggacaaag
     1621 ccacaagttg ccctgtttgt cggaaaaagc agagtgcatg gtgttagaaa atttgcggtc
     1681 gggcgagtcc ggatcattat gaaatgcctg tagggagttg agtgccttat tgtacaaact
     1741 gaaaccacca aaacgtggat gtacccatat gttaccatat ttatcttcga taacgaagaa
     1801 attcggggcc ggggcgaact ggcttgaatt aaccgctttt ttattgaaat tatttacttt
     1861 ttgttcccgg gtctgaaaat aaacaacact tggattatct gtttctatcc agatattctg
     1921 ctgtttatcc atgtagcagg agtaaaaaac atcacctata acgcccgaac cattcgactt
     1981 tgtgaatgga gtaaactttt gttgattaat gtcatacagg aaaaatccac tcaggttgct
     2041 aagaataaaa agttgattgg cattcagggc ctttatgtct aaaacagacg attcgcatgg
     2101 cgatgtaatg ccatcgaacg tttctttgcg ggtgttgtat atcctgattt taccatgttc
     2161 gcctccgatc cagataaaat tgccactttc tgtgatggaa taaaaagcgc ctccggtctt
     2221 ttctttaaat aattgtaccg gttttaggtt gtttggtttg aaaatattca ggccattatc
     2281 tgtcagcacc caggcatttt tgtgtttgtc ctgaaaaatc ttgtttattt tgttagaact
     2341 gagcagctcg tttccctcgt taaaatgcca gatctttatg tcatcatttt cggttgaatt
     2401 ctgtatcctg aaacatccat cccctccacc tgtcaaccat atcgacccat cggcgaaagt
     2461 gtaaatgttt tcgagattaa ctttgtagct tttgaattcc tctttgcatt gcggcacttg
     2521 caggaagttt tcggttcggg ggtcgaaccg gtaaacacga ccatcataag tttgtatcca
     2581 caggtagcca tcattatctt ccctgattaa atcaacgcgg tagttttcca gtccgaagag
     2641 ttgcccggga ttgcttttgt aggttttaaa tgtatagccg ttgaacttgt tcaggccgtc
     2701 gaatgtgccg aaccacattt gccctttttt atcttgcatc atgcatagca catttatttc
     2761 cgataaacct tcttttaccg aataatgtga aaattgtgtg taagttttgg caacaaatgg
     2821 aaaagaaata gaaagaaaca ggatagcgag cgtgattttt ttcatacgta tttttgctgt
     2881 tattttcgga ctataagcag attatacttg tcacaaaggt aaacaatttt acaacatttg
     2941 cctttgcaca acaaaattat aaatgattcg gaaagaaatc atgatttaga agttgatata
     3001 ccaaaaactc ccagtaaaaa atcaattttt ctactttcag tatttaaaaa taccccaatt
     3061 ttgcaattga tttttagagt tgaaaatcag cgattgtata attgaaaaaa gtagaaataa
     3121 tttttgatac tatgagtatt ttaaaaagag taatttttgt tggaactttt gtggttttat
     3181 gttcgaactt tattttttcg gaaaactaca aatatggat
//
LOCUS       DATDNM010000431         2039 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1016570, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000431 DATDNM010000000
VERSION     DATDNM010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1016570"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..638)
                     /locus_tag="VI413_07320"
     CDS             complement(<1..638)
                     /locus_tag="VI413_07320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914469.1"
                     /translation="MKKISVFLVAFVSSLFVHVNAQTNYTSRINNPGFETGNLTGWTF
                     TGTSGFAWAGVNTDGDATKTGSYIAGIWNSTIADVELSQSLSGLPNGNYRVTADLMGS
                     SNATTSRLTTQRLFANAKSKLFGLSTSYSTANLGILGATEGYSFGGYSETANDKGPFL
                     KLSVVVNVTDGNLKFGIRTNGKTSTLGYKFPNLTAGDGYGWFKVDNFTLTEVS"
     gene            complement(753..>2039)
                     /locus_tag="VI413_07325"
     CDS             complement(753..>2039)
                     /locus_tag="VI413_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEY6914470.1"
                     /translation="DGETLAEIPANPEKMIEIPTIKFAQSATLFDNLPKSKKSESIHP
                     MEFFNQGWGSILYRTTIVASSRKRKLTITDVHDWATVFIDGKPIGKLDRRRADKVVEI
                     PPLAANARLDILVEGMGRVNYGKGILDRKGITEKVVLSENGTESTLKNWSVYNFPVDY
                     SFQQKAKYAKQQAVGPAWYKALFDLSETGDTYLDMSKWGKGMVWVNGHNLGRFWRIGP
                     AQTLYLPGCWLKKGRNEIIIFDLDVPQELAVSGINHPILDIILPDESLLNRKKGQNLK
                     LEGVKPVIAGSLPAEQGWKKISFDEMKSGRYFCFEALNSQAENDPVTSVAEIEIIGSD
                     DKPVSSLNWKVLYADSEEVTKANNTADKLFDLQESIIWQTQISGASPKHPHQVVIDMG
                     GIVNVKGFRILPRSDKSNVGMVKDYQFYLEKDPFTF"
BASE COUNT          591 a          460 c          382 g          606 t
ORIGIN      
        1 gacacttcgg tgagtgtaaa attatccact ttaaaccacc cataaccatc tccggcggtt
       61 aaattgggga atttatagcc gagcgtggag gttttaccat tcgtacgaat tccgaatttc
      121 agattcccat cagttacatt caccacgacc gacaatttca gaaaagggcc tttgtcattt
      181 gctgtttcgg agtaacctcc aaaagaataa ccttcagttg cgccaagaat tccgagattg
      241 gcagtagaat aggaagttga gaggccaaaa agttttgatt ttgcatttgc aaacaaacgt
      301 tgagttgtca gacgactcgt ggttgcattg ctgctaccca tcaaatcggc agtaactctg
      361 taattgccat ttggcaaccc tgaaagtgac tgcgatagct caacatcagc aatggtggaa
      421 ttccatatac cggcaatgta cgagccggtt ttggtggcat caccatcagt gttgactcct
      481 gcccaggcga agccggaagt tccggtaaat gtccaaccgg tgagatttcc ggtttcaaaa
      541 cccggattgt taatccggct agtgtaattt gtctgtgcat ttacatgaac aaatagactg
      601 ctcacaaagg caactagaaa gactgagatt tttttcatga tagaattata attacaaatt
      661 agatttaact ggtcaattga tcaacaaaaa acgttaggtg ctccaaatat atgaaataaa
      721 tttgctcacc aacgaaatta aaataaacgg ttttaaaaag taaatggatc tttttccaga
      781 tagaactgat aatcttttac cataccgaca ttgcttttat cggaacgtgg aagaatgcgg
      841 aatcctttta catttactat tccacccata tcaataacca cttgatgggg atgtttgggg
      901 cttgctcctg aaatttgcgt ttgccaaata attgattcct gcaaatcaaa cagtttatca
      961 gcggtattat tggctttggt aacttcctcg ctatcggcat aaagcacctt ccagttcaac
     1021 gacgaaacag gtttatcatc gcttccaata atttctattt cagcaacaga agtcaccgga
     1081 tcattctccg cctgagaatt taaggcttcg aaacaaaaat atcgacccga tttcatttca
     1141 tcaaatgaga tttttttcca accttgttcg gccggaagcg aacctgcaat taccggcttc
     1201 actccttcta acttgagatt ttggcctttc ttacgattca gcaatgattc atcgggaaga
     1261 attatatcaa ggataggatg attaattcct gaaacggcta attcttgcgg aacatctaaa
     1321 tcgaaaataa taatttcgtt gcgtcctttt ttaagccaac atcccggcaa ataaagtgtt
     1381 tgcgctggcc caattctcca aaaacgacct aagttatgtc cgtttaccca aaccatccct
     1441 ttgccccatt tgctcatatc gagataggta tcgccggttt cagataaatc aaataaagct
     1501 ttataccaag ccggtccaac agcctgttgt ttggcatatt tagctttctg ttgaaaagaa
     1561 taatccaccg gaaaattata aaccgaccag ttcttcaacg tgctttctgt tccgttttcc
     1621 gataaaacca ctttttcggt aatgcccttg cggtcgagaa tccctttgcc ataattaaca
     1681 cgtcccattc cttccaccaa aatatccagc cgtgcatttg ccgctaatgg cggtatttcc
     1741 actactttat cagccctgcg ccggtctagt tttccaatcg gttttccatc aataaaaacg
     1801 gttgcccaat cgtgtacatc ggtaatcgtt agtttccgct tgcgggaaga agccacaatt
     1861 gtagtccgat acaaaatgct gccccaaccc tggttaaaaa actccatagg atgaatgctt
     1921 tcactctttt tagactttgg caaattatcg aacaatgtag ccgattgagc gaatttgatg
     1981 gtcggaatct caatcatctt ctcaggatta gctggaattt cagcaagtgt ttcgccatc
//
LOCUS       DATDNM010000432         4308 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2085456, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000432 DATDNM010000000
VERSION     DATDNM010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4308
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2085456"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1413)
                     /locus_tag="VI413_07330"
     CDS             complement(<1..1413)
                     /locus_tag="VI413_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016278495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY6914471.1"
                     /translation="MKKILTIPTLLLIISLACFAQQKDNKQEEIFIKNLLSRMTLDEK
                     LGQTNQTHFNTTVDSMCMKVRNSEIGSLLNIDPKLINQIQRTAVKESRLGIPVIIGRD
                     VIHGYKTVFPIPLGQAASFNPQVPEDGAHVAATESREQGIAWTFAPMLDISRDARWGR
                     IAESLGEDPYLASMMGAAMVRGFQGKNLKDKNAMAACVKHFVGYGAAEGGRDYNSTNI
                     PIHLLRNVYLPPFQKAIEAGAATVMTSFNDNDGIPSSGNDFLLRTVLRDEWKFDGFVV
                     SDWESMSEMIKHGFAKDKKDVATISLKAGMDMEMVSGTYMKYMKELLKEGKVSIKDVD
                     NAVLNILRIKYRLGLFENPYVVEKAVSTIYSAEHLQKARRAAVESAVLLKNANNILPL
                     KPTAKIAIIGPMANAAHDQLGTWSFDGDKNKTVTPLKALQTEYANINYVYEPGLTYSR
                     DKSINFYKAIKATESADVAVV"
     gene            complement(1509..3284)
                     /locus_tag="VI413_07335"
     CDS             complement(1509..3284)
                     /locus_tag="VI413_07335"
                     /inference="COORDINATES: protein motif:HMM:NF027758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5040 domain-containing protein"
                     /protein_id="HEY6914472.1"
                     /translation="MKKTFILLLGILCSVLSYPAAPKYHFMLTGASFAVPENGWFELS
                     CKAFDAEPINKAISGEAIFDAANRMAANTFCTKDELERTDVFIIMQVHNQNVADHTWL
                     KENYADYTMPTTNYAVAYDYVIKRYKDDCYKLKNDPTSKYYGTPNGKPAVILLCTHWH
                     DSRTVYNPAIRILAQKWNLPLVEWDTNIGFTKDVLINGQQPSIQYAMNNEVINGVTYG
                     WHPLRGQEQYIQKKISSIFNAAMEKIVGAIPVSATVSAKANAILSGETATVNVNFTGL
                     PPWNFSYNANGQTVNLTNITDNPLKLNFTITSGDNLLVEPVSVSNNSVSEGTVSGQAS
                     VSIADKVVTPSYDAYVHQANATTSYTTDQFVQVKTTTDNYSREAFFTFNLNNISATDE
                     KMIFRTYFYQNVYPANASLVENHLVEIDGNTDNYSTLTWNTRPTNMTKIGETLIYPTD
                     MGGYVSWDITSWVKEQIAAGRTKATLRLKVINSGSGLLYFYSSESATNKPQLIISSPT
                     TTGITKNTDNKIMVLPNGNNLKIENNAQINAISIHSVSGKCIYRNNNITSNALSINSS
                     QFPVGMYLLNVLSENQTWSQKFIKR"
     gene            complement(3305..>4308)
                     /locus_tag="VI413_07340"
     CDS             complement(3305..>4308)
                     /locus_tag="VI413_07340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008860678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914473.1"
                     /translation="SELKPQVEISPLQGMIDKYGKDHVIFSLGYASGKPNYSNELPSP
                     YNADSLAKAAVEVARNADVVIFFGGLNKNFRQDCEGDDRKNMDLPFGQNELIAKLLEV
                     NKNLGIVIVSGNAVSMPWLNKVNGLMQSWYLGSQGGVATANIISGDANPSGKLPFSIP
                     KKLEDNGANSFGTEAYPGNGTDVVYKEDILVGYRWFDTKKIEPLFPFGYGLSYTTYQY
                     GKTKTDKSAYKSDETAKITFTLTNTGKVAGSESVQLYVSQRNPSMLRPAKELKGFTKV
                     ALDAGETKTVEMLLKLNDMAFYNDKIGAWTLEPDDYVISIASSSRSIKSSNIIKVTR"
BASE COUNT         1113 a          885 c          862 g         1448 t
ORIGIN      
        1 aacgactgcc acgtctgcag attctgtagc tttaatagct ttgtaaaagt tgatgctttt
       61 gtcgcgggag taggtcagcc ccggttcata tacgtaattg atattggcat attctgtttg
      121 cagagctttt agtggtgtaa cagttttatt tttatcaccg tcgaaagacc atgtacccaa
      181 ctgatcgtgc gcggcattag ccattggccc tataatggca attttagcgg ttggttttaa
      241 tggcaggatg ttatttgcat tcttcaataa aactgctgat tcgacggcag ctcgccgggc
      301 tttttgtaaa tgttcagctg aataaatagt cgatacagct ttttcaacaa catatggatt
      361 ttcaaaaagt cctaggcggt atttaatgcg caggatattc agaactgcat tgtctacatc
      421 tttaatcgaa accttgcctt ctttgagtag ttctttcatg tacttcatat aagttccact
      481 caccatttcc atatccattc cggctttcag agaaatcgtt gccacatctt ttttgtcttt
      541 tgcaaagcca tgctttatca tttccgacat ggattcccag tcggaaacca caaatccatc
      601 gaatttccat tcgtcacgaa gtactgttcg cagcagaaaa tcatttccag acgaaggaat
      661 tccatcgtta tcgttgaagg aagtcataac agtcgccgca ccggcttcga tggctttctg
      721 aaacggtggc aaatacacat ttctcaacaa gtgaatggga atgtttgtgg aattatagtc
      781 gcggccacct tcagcagccc catagcccac aaaatgcttt acgcaggcag ccattgcatt
      841 tttgtcttta aggtttttcc cctgaaaccc gcgaaccata gccgctccca tcatgcttgc
      901 cagatagggg tcttcgccca gactttctgc aattctaccc cagcgggcat cgcgcgaaat
      961 gtccaacata ggagcaaatg tccatgcgat accctgttct ctcgattctg ttgcagctac
     1021 atgtgcacca tcttcaggca cttgaggatt gaaagaagct gcctgtccca gtggaattgg
     1081 gaaaactgtt ttgtagccgt gaataacatc gcggccaata attaccggaa tgccaaggcg
     1141 agattctttt acagccgtgc gttgaatctg attaataagc tttgggtcta tatttagcag
     1201 ggaccctatt tcactgttac gtactttcat gcacatactg tcgacagtgg tattgaagtg
     1261 agtttgattc gtttggccca gtttctcgtc gagagtcatt cggctcaaca ggtttttaat
     1321 gaatatctct tcttgtttgt tgtctttttg ctgtgcaaag cacgcaagcg aaataattaa
     1381 taaaagtgta ggaattgtta gaattttctt cattattttc tttaattttt tttttgagta
     1441 ggttttttcc cattgataaa actgataact gtgcgaatgg aatcacttta ttttgcacaa
     1501 tatgtatttt accgttttat aaacttttga ctccatgttt gattctctga aagaacattt
     1561 agcaaataca tccctactgg aaattgagaa gagttgattg ataatgcgtt acttgtaatg
     1621 ttattgtttc tgtagataca ttttccgctt actgaatgta ttgatatagc atttatttga
     1681 gcattattct ctattttcag gttattccca tttggaagta ccattatctt gttatctgta
     1741 tttttagtta ttccggtagt tgtagggctg ctgataatca gttgtggctt gtttgtagcc
     1801 gattcactgg aatagaaata aagcaatcct gacccgctat ttataacttt caatcggaga
     1861 gttgctttgg ttcttcctgc tgcaatctgc tcctttaccc aactggtaat atcccagctt
     1921 acataacctc ccatatctgt tggataaata agtgtttcac caattttcgt catattagtt
     1981 ggtctggtgt tccacgttag tgtactataa ttatctgtat ttccatcaat ttcaaccaaa
     2041 tggttttcaa ctaaactggc attagccgga tatacattct gataaaaata agtacggaaa
     2101 atcatttttt catccgttgc agaaatatta ttcagattga aagtgaaaaa ggcttcccgt
     2161 gaataattat ccgtagtggt ttttacctga acgaactggt cggttgtata gctggttgtg
     2221 gcgttggctt gatgaacata tgcatcatag gatggggtga caactttatc agcaatcgaa
     2281 accgaagcct gaccgctaac tgtaccttcg gaaacagagt tgtttgacac cgaaactggt
     2341 tctacaagca ggttgtcgcc gcttgtaatt gtaaaattca acttcaaggg gttgtcggtt
     2401 atgttggtca ggttaaccgt ttgtccgttt gcattatagc taaaattcca tggtggcaaa
     2461 cctgtgaaat ttacattcac agtagcagtt tcgccggata gaatggcatt ggcttttgca
     2521 gaaaccgttg cgctaacagg aattgctccc acaattttct ccatggctgc attaaatata
     2581 cttgagatct ttttctggat gtactgctct tgtcctctga gtggatgcca gccataagta
     2641 acgccattga tcacttcatt attcatcgcg tattgaatgc ttggctgttg cccattaatt
     2701 aatacatctt ttgtaaaacc aatgttggta tcccattcaa ctaaaggaag attccatttt
     2761 tgagccaata tgcgaattgc cggattatat actgttcgtg agtcgtgcca gtgtgtgcat
     2821 aaaagtataa ctgccggttt tccgtttggg gtgccgtaat acttcgacgt cgggtcattt
     2881 ttcagtttgt agcagtcatc tttatatcgt ttaattacat aatcgtaagc cacggcataa
     2941 ttcgttgtag gcatggtgta gtcggcataa ttttctttca gccaggtgtg gtctgccaca
     3001 ttctgattat gcacttgcat gataatgaac acatctgttc gttccagttc atcttttgtg
     3061 caaaatgtgt tcgctgccat acggttggct gcatcaaaga tagcttcgcc cgatattgct
     3121 ttatttattg gctcagcatc gaaagctttg caactaagct caaaccaccc gttttccggt
     3181 actgcaaacg atgctccggt aagcatgaag tggtattttg gtgctgcagg ataagataga
     3241 acactgcata atattcccaa taaaagtata aaggtctttt tcatttggat tattttttta
     3301 caaattagcg agttactttg atgatatttg atgatttgat acttctggaa gaagatgcaa
     3361 tactaataac ataatcatca ggttcaagag tccacgcacc tattttgtca ttgtagaatg
     3421 ccatatcgtt cagtttgagt agcatttcta ctgttttggt ttcacctgca tccagagcaa
     3481 ctttcgtgaa tcctttcagt tctttagcgg gacggagcat ggacgggttt ctttgcgaaa
     3541 catagagttg tacggattcc gaaccagcta cttttccagt attagtaagt gtaaatgtaa
     3601 ttttagccgt ttcgtccgat ttatatgctg atttatcagt tttggttttt ccgtattgat
     3661 aagttgtgta agaaagtccg tagccgaatg gaaataatgg ttcgattttc ttggtgtcga
     3721 accaacggta accaaccaaa atgtcttctt tgtaaacaac atcagtccca ttgcctggat
     3781 aagcttctgt tccgaatgaa tttgccccat tgtcttcaag tttctttgga atactgaatg
     3841 gcaattttcc tgaaggattt gcatcgccac tgataatatt ggcagtagct acaccaccct
     3901 gggagccaag ataccacgac tgcataagtc cgttcacttt gtttaaccat ggcatgctta
     3961 cagcatttcc gctcacgatt acaataccca gatttttatt cacttccaat aatttggcaa
     4021 tcaactcatt ctgtccaaat ggcaagtcca tgttttttcg gtcgtctcct tcgcaatctt
     4081 gtcgaaagtt cttattcaag cccccgaaaa agataacaac atcagcgttt ctagctactt
     4141 caacagctgc ttttgccaac gaatcagcat tgtaaggtga tggtaattcg ttgctgtagt
     4201 tcggtttccc cgaagcgtaa ccaagactga aaatgacgtg atctttgcca tatttgtcta
     4261 tcattccctg cagaggcgag atttccacct gcggttttag ctccgatg
//
LOCUS       DATDNM010000433        10414 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_910756, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000433 DATDNM010000000
VERSION     DATDNM010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 10414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10414
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_910756"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..846)
                     /locus_tag="VI413_07345"
     CDS             complement(<1..846)
                     /locus_tag="VI413_07345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914474.1"
                     /translation="MQKMKFLSMLLIALGFGLLGTSCTQSDTDTATTLTLSATATDEA
                     QAAGISDDITNEVDNYVTTAAFTNTAAGVKSMFVDTEATGPTITVDKKDSVNFPKTII
                     IDYGTTGITGKRNNTLKGKIIVVVSNKMWIANSTRTITFENFSVNDNAITGTKILTFK
                     GLNADKNPYWTISVNDTITRTDGTKVSWNSERTRVKLNGNGTPYIYWDDNYSITGTSN
                     GVNARGKAYTMVIDNANPLLIGGGYRYFTKGTLTITSESKTAVIDYGNGTKDNKATVT
                     VNGVSK"
     gene            1124..1900
                     /locus_tag="VI413_07350"
     CDS             1124..1900
                     /locus_tag="VI413_07350"
                     /inference="COORDINATES: protein motif:HMM:NF014336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1/P1 nuclease"
                     /protein_id="HEY6914475.1"
                     /translation="MKLNKQILTLFLLAITFSVSAYDAVGHRIIADIAYQNLTEKARI
                     QLDNILGKHGVVYEATWADEVRSDRKYDYSYQWHYQNLADSLSVADFKKLFDNPKAEG
                     EHLFFALDQMQSRLKKDKSDVEALKFLIHFVGDLHQPMHLGRLTDLGGNRVDYNWFGK
                     KTNLHATWDGLLIENQKMSYSEYSRYLQDKFAPQKAEFKKYSVLQSVETAYEVRTQIY
                     AYDYSDTNNYHYAYRFGDKLDEMLYRGGIQLANILNGIYK"
     gene            1977..2429
                     /locus_tag="VI413_07355"
     CDS             1977..2429
                     /locus_tag="VI413_07355"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6914476.1"
                     /translation="MSELHDPVLIRELNYDSDDYRKELELRDEVLRKPLGMSLYNDNL
                     ERDKDDTHIGAFMGEQLVGVLILTRLSDTDVKMRQVAVAENMQSQQVGSKMVRFAEDY
                     AKEKGYKNMVLNARKTAVAFYEKQGYSTISGEFLGINIPHYKMQKQIG"
     gene            complement(2457..3503)
                     /locus_tag="VI413_07360"
     CDS             complement(2457..3503)
                     /locus_tag="VI413_07360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HEY6914477.1"
                     /translation="MAQLHQPLTIKSVTFKNRLGMPPMCQYSAIDGFATNWHYVHYGT
                     RAIGGVGLVIVEATAVVPEGRITPADLGIWNDEQTAELQKIVEFIHEHGSVAGIQIAH
                     AGRKASHDTPDKGGKQLAPENGGWQTVAPSAIPFDATGIPPVALDKDGINNVINQFKA
                     AAKRAKEAGFKVLEVHAAHGYLIHEFLSPLSNKRTDEYGGSFENRTRLIREVVEAVQT
                     VWPADLPLFVRLSATDWAQGGWGTDETVRLCETLHKMGVDLIDCSSGGNIAAAKVPVG
                     PGYQVPFAEAIRATGILTAAVGLITRPEQINSILEDGKADMIFMGRELLRNPYFLFKA
                     DEEGAWPIQYLRAK"
     gene            complement(3653..4474)
                     /locus_tag="VI413_07365"
     CDS             complement(3653..4474)
                     /locus_tag="VI413_07365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEY6914478.1"
                     /translation="MKKIIFSVLAFAAVMVSCSSNEDLAGVASVSGSTSASVAAYVAE
                     NYPATKIVSTTASGSTVTATLNTGETLSFSKAGSFIAYSNNSSEGLVADSLIVSDSIA
                     TDSVGRPHHRGGHEGHGGMGHHGEGPGSDSMSVGHQRHFENEIALDSLPTVINDYILA
                     NYAGNVVIHAERDTICQGAVIEVLVCVTTQEPIKLVFDAVGAYLFKAERIHYTDVPAE
                     VSAAVSANYSTFKIKNRAEKFTLTDGTLQYKVFIQSKEVRKSVTFNVAGTVSCEK"
     gene            4976..5410
                     /gene="dut"
                     /locus_tag="VI413_07370"
     CDS             4976..5410
                     /gene="dut"
                     /locus_tag="VI413_07370"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005942548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEY6914479.1"
                     /translation="MQINIVNRSKHSLPEYATPLSAGMDLRANIDEPIVLKPLERKLI
                     PTGLFMELPAGYEAQIRPRSGLAIKKGITVLNSPGTIDADYRGEVCIILVNLSAEEFV
                     INDGERICQMVIAKHAQAEWVEVVELGETGRGAGGFGHTGKH"
     gene            5497..7239
                     /locus_tag="VI413_07375"
     CDS             5497..7239
                     /locus_tag="VI413_07375"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6914480.1"
                     /translation="MHKIYFLLFLGLVSITSFVTAKPVIQKGKPESGLSAAEQRQFDY
                     YFYEGIRLKNDQKYDEALETFRLCLALDSLDGGALSETGILYASIGLNEEAVRYLEKA
                     VQSDPANWWYNVQLISMYSGLKSWKQAIAATVELQKKYPNKEEVYNMLASFYKETKEY
                     DKAIAAFDHLESLTGIEQSISFEKFRLYIMSNKPKKGIAEIDKLVNKYPTETRYQVLR
                     GDIFMQQKMPEKAFEIYQQVLKDDPQNAFVYVSLSEYYNSVNKPDKALESIVSALKSE
                     QLDVDTKVQVLGQYVEKLVKDSTRLVETESLFKLLVDRYPLEEQVHGYYAVFLQYQKR
                     NAEAISELETMININPKNDQTWMKLIQFYTGERNYSQILTVTSRAIENLPKNPAWYFY
                     RGIALFQQADYKNALEAYQTGLPFIPAEQAALKSDFYAQIGDSYFKLEKKDSAFANYE
                     RALEANPKNIMVMNNYAYYLSLEKAELKKAEKMSAKTVELEPKNSTYLDTYAWILYQQ
                     GSYSLAKFYIERAVDNLTKEEDPGVVLEHYGDILWMNNKDDKAQEMWQKSYDAGNKTD
                     ELKKKIENKGWKRP"
     gene            7252..8052
                     /locus_tag="VI413_07380"
     CDS             7252..8052
                     /locus_tag="VI413_07380"
                     /inference="COORDINATES: protein motif:HMM:NF025490.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4292 domain-containing protein"
                     /protein_id="HEY6914481.1"
                     /translation="MRHKIIIPVLILLIFSACKTTKTIAKKETKTGNQIAQTIEQVQK
                     KQPQFRTANVSKMSLELDMNDRKLNVSGSCKIRKDSAMFVSFQVFGFEVFKAELLTDS
                     MRVFDKMNRRYFVTDYSYFSKRFGVDVDYYSLQSLLAAQFFCVGSREIQPDSCKLVTS
                     PTGQNCINFETGNMLQSTQLTALNVIQQVILKAKNSNYQLQTTYADYADVNGISFPQK
                     IALLASNDKTKASCDFSILKVEFNTDVKFVATGTDRYTRGNIDQILKK"
     gene            8092..9597
                     /locus_tag="VI413_07385"
     CDS             8092..9597
                     /locus_tag="VI413_07385"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEY6914482.1"
                     /translation="MQFQSPNRIFILIFSALALVFSLQAQSVKELELQRKQTLKNLET
                     TNKLLKETKKSQRSSLTKLTIIGKNINERKVLIKNISTEIGKLDDEMGQLDQEKTRLE
                     KRLSILKADYARLVQEAHINRSVYAKIMFVLSAKSFDQSYRRLRYLQEYSDYRKQQVR
                     EIEGVKVQIQQKNDSLQIHKTTKVEVVKQKETEAQNLTKDQQKEKVLLTDLQKKEKKL
                     RADQKIQQKKANDLNNKIASIIAAEIRKAEAKRAAEKQKQLASQKEAEAKRIAEAKRA
                     AEAKKAAEQAKRLEMERAAEKRKIAEANAAKTKSEASKAEVKAAKKAEEEAKAAVKVA
                     ASETAKATAEVKATSSASVSTLTKEETLLSGNFERNQGRLPWPTSNGFISGHYGVQPH
                     AVLKHVTTNNKGIYIQTPSGSSARAVFEGVVTQRFSIPGNNNAVIIQHGNYRTVYANL
                     TQIFVREGDHVSAKQAIGRIYTDDDSDNKTELYFQIWNGKSLQNPESWIAR"
     gene            9717..>10414
                     /locus_tag="VI413_07390"
     CDS             9717..>10414
                     /locus_tag="VI413_07390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005859805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6914483.1"
                     /translation="MEEFVNESLLVDYGDSNIITLEGLEHLSRRPGMYIGKLGDGTHS
                     DDGIYVLLKEVLDNCIDEYRMGAGRNVEVRVKDGHVEVRDYGRGIPLGKMVEAVSIMN
                     TGGKYDSKAFKKSVGLNGVGTKAVNALSSRFVVQSFRDGQSRRAEFEKGKIVSDTDIF
                     DEAGSERGTYVYFVPDNTLFNDYIYKEEYIETMLRNYAYLNTGLAINFNGKRILSKNG
                     LTDLLNENMTSDPL"
BASE COUNT         3229 a         2069 c         2339 g         2777 t
ORIGIN      
        1 tttgctaact ccgttcacag tcaccgttgc tttattgtct tttgttccat tcccataatc
       61 aattacagct gttttcgatt ccgaagtaat ggttaaagtt cctttggtga aatacctgta
      121 tccgccgcca ataagtaatg gattggcatt gtctatcacc attgtgtaag cttttcctct
      181 tgcattaaca ccgttggagg tgcctgtgat tgaatagttg tcgtcccaat agatataggg
      241 tgttccgttg ccattcagtt ttacacgggt gcgctcagag ttccagctaa cttttgtccc
      301 atcagtgcgt gtgatagtgt catttacgct gatggtccag taaggatttt tatccgcgtt
      361 caaccctttg aatgtaagaa tttttgtgcc ggtgatggca ttgtcgttta ccgagaaatt
      421 ctcgaaagta atggtacggg tcgaatttgc aatccacatt ttgtttgata ctactacaat
      481 tatttttcct ttaagcgtat tgtttcgctt tccggttata cccgtagttc cataatcaat
      541 aatgattgtt ttggggaaat taacggaatc ttttttgtca accgtaatgg ttggcccggt
      601 agcctcagtg tcgacaaaca tcgattttac acctgcggct gtgtttgtaa atgctgccgt
      661 tgtcacatag ttatccactt cgtttgtaat atcgtcgctt atacctgctg cttgtgcctc
      721 gtcggtagca gtggcgctta aggtgagtgt tgttgcggta tcagtatcgc tttgcgtaca
      781 tgatgttccc aacaatccga atcccaatgc aataaggagc attgacagaa atttcatttt
      841 ttgcataaaa gttagtctta atgattaatt ctaaaaaata ttgtcttttt cgtttttgac
      901 gcaaattaac gctattggtt taatctgcct gaaacgagta tgaatacaga tgttcaccaa
      961 agttgatgaa aatttcacat acgagtccat gtgataaccc gaaaacgatt acttacacat
     1021 gcgaatcttt cgcagactca tatttccatc ttgtttttga ataaatattc tatctttgtt
     1081 gcgttttata caaacggaac tatcaataaa aaattataga aagatgaaac taaacaagca
     1141 aattctcacc ctgttcttat tggcaataac gttttctgtt tcggcttacg atgccgtcgg
     1201 gcatcgtatt attgcagaca ttgcttatca gaatttgacg gaaaaagcac gcatccagct
     1261 ggataatatc ctgggcaaac acggcgtagt ttacgaagct acctgggccg atgaggtgcg
     1321 aagcgacaga aaatatgatt acagctatca atggcattac caaaacctgg cagatagcct
     1381 ttcagttgct gatttcaaga aattatttga caacccgaaa gccgaaggcg aacatttgtt
     1441 ttttgctctt gaccaaatgc aaagccgcct gaagaaagac aaaagtgatg tggaagccct
     1501 gaaatttctg attcattttg tgggtgactt gcaccaaccc atgcacctcg gacgattgac
     1561 cgatttaggt ggaaaccgcg tggattacaa ctggtttggc aaaaagacca accttcatgc
     1621 aacctgggat ggactgttga ttgaaaatca gaaaatgtcg tattcagaat acagccgcta
     1681 cctgcaggat aagtttgcac ctcaaaaagc ggaattcaaa aagtacagcg tactgcaatc
     1741 ggtagaaact gcctatgaag tccgtaccca aatttacgct tacgattatt ccgacaccaa
     1801 caactaccat tacgcctatc gctttggtga taaactggac gaaatgcttt atcgtggagg
     1861 aatccaactg gccaatatcc tgaacgggat atacaaataa tccattaatc ttttttagtt
     1921 ggaaactgac tgtatgaacg catgtcacaa gcaagaattg aaaaaaataa ccaacaatga
     1981 gcgaattaca tgatccggtt ttgatccgtg agctaaacta cgattcggac gattacagga
     2041 aagagttgga actccgtgat gaggtgctcc gaaaaccact gggaatgagc ctgtataatg
     2101 ataatctgga gagagataag gatgataccc atataggcgc atttatggga gaacagcttg
     2161 ttggagtgct tattcttacc cggctaagcg acactgatgt aaaaatgagg caggtggcag
     2221 tggctgaaaa catgcaatcg caacaagtgg gcagcaagat ggtgcgcttt gccgaggatt
     2281 atgccaaaga aaagggatat aaaaacatgg tgctgaatgc ccggaaaaca gcggtggctt
     2341 tttacgaaaa acaaggatat tcaacgataa gcggagaatt tctgggaatc aacattcccc
     2401 actacaagat gcagaaacag attggttgac ttccattaaa ataactgttc agcaccttat
     2461 tttgctctca aatactgaat cggccaggca ccttcttcat cagctttaaa tagaaaatac
     2521 gggttacgca acaattcacg tcccataaaa atcatatcag cttttccatc ttccaggatg
     2581 gagttgattt gctccggcct ggtgattagc cctacagcgg cggttaaaat gcctgttgca
     2641 cgaatggctt cggcaaacgg aacctgatag cccggtccga ccggaacttt ggctgcggca
     2701 atgtttcctc cggatgaaca atcaatcagg tccacgccca ttttatgaag cgtttcgcaa
     2761 agcctgaccg tttcgtcggt accccagccg ccctgtgccc aatcggttgc agataagcgc
     2821 acaaacaaag gcaaatctgc cggccaaaca gtttgaacgg cttccaccac ttcgcgtatc
     2881 aggcgggtcc ggttttcgaa gcttccacca tattcatccg ttcgtttatt gctcagtggc
     2941 gatagaaatt catgaatcag ataaccgtgg gcagcatgaa cttccaacac cttgaaaccg
     3001 gcttcttttg cccttttggc agcagcctta aactggttaa tcacgttgtt tattccatct
     3061 ttatcgagtg ccacaggtgg tattccggta gcatcaaacg gaatggccga aggagccaca
     3121 gtttgccagc cgccattttc gggtgccaat tgtttgccac ctttatcggg agtgtcgtgc
     3181 gaagctttcc gaccggcgtg cgctatctga attccggcta cagagccatg ctcatgaata
     3241 aactcaacga ttttttgtaa ctccgcggtt tgttcatcgt tccagattcc cagatcggcc
     3301 ggggtaatcc gtccttcggg tacaacggct gtagcttcta caataaccag cccgacgcct
     3361 ccgatagctc ttgttccgta atgaacataa tgccaattgg ttgcaaatcc gtcgatagca
     3421 gaatactggc acatgggcgg catgccaagc cggtttttga aagtaaccga ttttatggtt
     3481 aatggttggt gtaattgagc catgaaatga ataatttatt taaacaaaag tagtttattt
     3541 accgcattgg aacaatgaac gaagtggaaa tgtttgacgc attctgaatt aaaaaacccc
     3601 gactggaaaa atccggccgg ggcaactcgt aagtcagtaa ggattagttt ttttattttt
     3661 cgcagcttac agttccagca acattgaaag taactgattt acgtacttct tttgactgga
     3721 tgaacacttt gtattgaagt gttccgtcgg tcaatgtaaa tttctcagca cggtttttta
     3781 ttttgaaagt tgagtagtta gcagaaactg ctgccgaaac ttctgcagga acatcggtgt
     3841 agtggattct ttcggccttg aataaataag caccgacggc atcaaatacc agtttaatag
     3901 gttcttgtgt agttacacat accaacactt caataacagc tccctggcaa atagtgtctc
     3961 tttcggcgtg aattacgaca ttaccggcgt agttggccaa gatgtaatca ttaattacag
     4021 taggcagaga gtctaacgca atttcgtttt cgaaatgacg ttgatgtcca acggacatgc
     4081 tgtcagaacc gggaccttct ccatgatgac ccatgccacc atgaccttcg tgtccaccac
     4141 gatggtgagg acggccaaca ctgtcggttg cgatgctgtc agatacgatc aggctgtcgg
     4201 ctacaaggcc ttcgcttgaa ttattggaat aagcaatgaa tgaaccggct ttggagaatg
     4261 aaagtgtttc acccgtatta agcgttgcgg ttacagtcga tccgctggca gtggtagaca
     4321 cgatttttgt tgccggataa ttttcggcta cataagctgc aactgatgca gatgttgaac
     4381 ccgatacact tgcaactccc gcaaggtctt cattactact gcacgatacc attacggcag
     4441 caaatgcaag aactgaaaaa atgatctttt tcataaagat aaaattttaa ttgttattat
     4501 tgatttgttt tttttagtga gaagtactca tgttccattt tccaagatct ttgttatgtt
     4561 cattttagaa tccggaacaa aaatagattt tggcaatttt caaaacaagc atattcagtg
     4621 gaaacaggtt ttctgtaagt gaacgttgta ataactacaa acattaagta aatgaaaagg
     4681 gcggtaaggt gttatttgag gatgtccgga ggtaataatc aatttcaaag ccatatatgt
     4741 gtcctctttc cgggctcata tcagattatc ttttattgat ttagtgtgca aaataagaaa
     4801 gcacctttaa attttgtttc aaaaaaccag cagagattat cgggttattg aaaaaatcat
     4861 atttttcagg attatgtaaa taggtgtatt gataaaaatc gtatttttgt agctaaaccc
     4921 gatttttcag tcgaaagcta atagtaacca gtttaaagta aaaaaacaaa tagaaatgca
     4981 gatcaacatt gtaaaccgtt caaaacactc acttcccgaa tacgctacac cactttcagc
     5041 cggcatggac ttacgcgcta acattgatga accaattgtt ctgaaacctt tggaacggaa
     5101 attgatacca acggggttgt ttatggagct tcctgcaggt tacgaagcgc agattcgtcc
     5161 acgcagtggg ttggcaatta aaaaaggaat tacagtgctg aattctccgg gaacgattga
     5221 cgccgattat cgcggcgaag tttgcattat tctggtgaat ttatcagctg aagaatttgt
     5281 gattaacgac ggcgaacgca tttgccaaat ggtaattgcc aaacatgccc aggctgaatg
     5341 ggtggaagtt gtggaacttg gagaaacggg tcgtggtgcc ggtggatttg gccataccgg
     5401 gaaacattaa tctgttggct gttcatagtt gacgattgta ggtcaaatac gaatgcaggt
     5461 cgattacgaa caaatattta tgaagtaaaa aagcgtatgc acaaaatata ttttctgtta
     5521 tttttgggtc ttgtatctat cacttccttt gtaacggcta aaccggttat tcagaaaggg
     5581 aagccggaga gtgggctttc ggcggcggaa cagcgtcagt tcgattatta tttctacgaa
     5641 gggatacgcc tgaaaaatga ccagaaatac gatgaagccc tcgaaacatt ccggttgtgc
     5701 cttgctctgg attcgctgga tggtggtgcg ctatcggaaa cgggaatatt gtatgcttcc
     5761 attgggctca atgaagaagc tgttcgctat ctggaaaaag cagttcaatc cgaccctgca
     5821 aactggtggt acaatgtgca actgatttcg atgtattccg gattgaaaag ctggaagcaa
     5881 gccattgctg ctactgtaga acttcagaag aaatatccca ataaagaaga ggtttacaac
     5941 atgctggctt cgttttacaa agaaacgaaa gaatacgaca aagccattgc ggcatttgac
     6001 catctggaaa gcctgacagg tatagaacaa tcaatttctt ttgagaagtt ccggttgtat
     6061 atcatgtcca acaaacccaa aaaaggaatt gcagagatag acaaacttgt caataaatac
     6121 ccgaccgaaa cccgttacca ggtgcttcgc ggagatatct tcatgcaaca gaaaatgcct
     6181 gaaaaggctt ttgaaattta tcaacaggtg ctgaaagatg atccgcaaaa tgcgtttgta
     6241 tatgtatctt tgtcggaata ttacaattcg gtgaataagc ctgataaagc gcttgaatca
     6301 attgttagcg ctttgaaaag cgaacaactc gatgttgaca ccaaggtaca ggtgctcggg
     6361 cagtatgtcg aaaaactggt taaagattct acaagattag tagaaaccga gagcttgttt
     6421 aagttattgg tagaccggta tccgcttgaa gagcaggttc acggctatta tgctgttttt
     6481 ctgcaatacc agaaacggaa tgcagaggca atatcggaac tggagacgat gataaacatc
     6541 aatccgaaaa atgaccagac ctggatgaag ctcattcagt tttatacagg cgagaggaat
     6601 tacagccaga tactgacggt aactagccgt gccattgaaa atttgcccaa aaatccggcc
     6661 tggtattttt atcgcggtat tgcgctgttt cagcaagcag actataaaaa tgcattggag
     6721 gcttatcaaa ccggattgcc ttttattccg gcagaacaag cggctttgaa aagcgatttc
     6781 tatgcacaaa ttggcgacag ttattttaaa ctggagaaaa aagattccgc ttttgccaat
     6841 tatgaacgcg ctttggaggc taacccgaag aatattatgg taatgaataa ttatgcttat
     6901 tatctttcgc tggaaaaggc agagttgaaa aaagcggaga aaatgagtgc caaaacggta
     6961 gaacttgagc ccaagaacag cacttacctg gatacctacg catggatttt gtaccaacag
     7021 ggaagttatt cactggcaaa gttttatatc gaacgggcgg ttgataatct gacaaaagaa
     7081 gaagatccgg gcgttgtgct ggaacattac ggcgatattt tatggatgaa caacaaagat
     7141 gataaagcgc aggaaatgtg gcaaaaatca tacgatgccg gcaataaaac ggatgaatta
     7201 aaaaagaaaa ttgaaaataa agggtggaaa cggccgtaat tactaaaaaa tatgagacat
     7261 aaaataataa ttccggtgtt aatcctgctg attttttcgg catgtaaaac aacgaaaacc
     7321 attgccaaaa aagaaactaa aactggaaac cagattgcac agaccattga gcaggttcaa
     7381 aaaaaacaac ctcaattcag aacagccaat gtaagcaaaa tgtcattgga gctggatatg
     7441 aacgaccgca agctgaatgt atcgggcagt tgcaaaatcc ggaaagattc agccatgttt
     7501 gtttcttttc aggtgtttgg tttcgaagtt ttcaaggcag aactgctgac cgacagcatg
     7561 cgggtgttcg acaaaatgaa ccgtcgctat tttgtgactg attattcgta ctttagcaaa
     7621 cgatttgggg tggatgtgga ttattatagt ttgcagtcgc tgttggctgc tcagtttttt
     7681 tgcgtaggca gtagagaaat ccagccggac agttgtaaat tggttacttc gccaaccggt
     7741 caaaactgca ttaattttga aaccggaaat atgttgcaaa gtacccaatt gactgcattg
     7801 aatgtaattc agcaggttat actgaaagct aaaaacagca actaccagtt gcaaacaacc
     7861 tatgccgatt atgccgatgt aaatggaatc agttttccac aaaaaatagc cttgctggcc
     7921 agcaacgata aaacaaaggc ttcgtgcgac ttttccatac tgaaagtgga attcaatacc
     7981 gatgtaaaat tcgtggcgac aggcacagac cgatatacgc gtgggaatat tgaccagatt
     8041 ctcaaaaagt gagacaacaa atatagaaat gatttttaaa acaggatatt aatgcaattt
     8101 caatctccca accgaatttt tattctcata ttctcagcgt tagctttagt tttttcactt
     8161 caggcacaaa gtgtgaaaga actggaactg caacgaaaac agacgctcaa aaatctggaa
     8221 actactaata aattactgaa ggaaaccaaa aaatcgcagc gcagttcgtt gacaaaactc
     8281 acaattatcg gtaagaatat caacgaacgg aaagtgttga ttaaaaatat cagtactgaa
     8341 attggcaagc tggacgacga gatggggcaa ttggaccagg aaaaaacccg ccttgagaaa
     8401 agattatcca ttttaaaagc cgattatgca aggttggttc aggaagcaca cataaacagg
     8461 agcgtttatg ctaaaatcat gtttgtgctt tcggcaaagt ccttcgacca gtcgtaccgc
     8521 cggttgcgct atttgcagga atattccgat tacaggaagc aacaggtgcg cgaaattgaa
     8581 ggagtaaaag tgcagatcca acaaaagaac gacagccttc agattcataa aaccacgaaa
     8641 gtagaggttg ttaagcaaaa agaaaccgaa gcacagaatc tgacaaaaga ccagcagaaa
     8701 gaaaaggtat tgctcaccga cctgcaaaag aaagaaaaga aactgcgtgc cgaccagaaa
     8761 attcaacaga aaaaggccaa cgatttaaat aataaaattg ccagcataat tgctgccgag
     8821 atccgcaaag cagaagccaa acgcgccgcc gaaaaacaaa aacaacttgc ttcgcaaaaa
     8881 gaagcggaag caaaaagaat agctgaagca aaacgggctg ccgaggccaa gaaagcggca
     8941 gaacaggcca aaagacttga gatggaacgg gcagcagaaa aaagaaagat agccgaagca
     9001 aatgctgcaa aaacaaagag tgaagcttct aaagcggagg taaaagcggc caaaaaagct
     9061 gaagaggaag caaaagcggc tgttaaggtt gcggcttcgg aaacagcaaa agctacagcc
     9121 gaggtgaaag ccaccagcag tgcttccgtt tctacgctga caaaagaaga aacgttgcta
     9181 tcaggcaatt ttgagcgcaa ccagggacgt ttgccatggc ccacttccaa tggatttatc
     9241 agcggacatt acggtgttca gccgcatgcg gtgttgaaac acgtgacaac aaataacaaa
     9301 ggtatttaca tccagactcc atccggtagt tcagcgcggg cagtattcga aggagtggta
     9361 acacaacggt tctctatccc cggcaataat aacgcagtaa ttatccaaca tggaaactac
     9421 aggactgtgt atgccaacct gacacagatt tttgtgcgcg aaggcgatca tgtaagcgcc
     9481 aagcaagcca ttggtcggat ttataccgac gatgacagtg ataataaaac agaactgtat
     9541 ttccaaattt ggaatggaaa aagcctgcaa aatccggaaa gctggattgc aagataatga
     9601 cccccaaccc ctaaagggga attggattac aactggaagg tgtagtattt tgattaattg
     9661 atatataaaa actaacttca actccccttt aggggttggg ggttatttat tataacatgg
     9721 aagaatttgt aaacgagtcg cttttagtcg actatggcga cagcaatatt attaccctcg
     9781 agggtctcga acaccttagt cgccgtccgg ggatgtacat tggtaaactg ggcgatggca
     9841 cgcattcgga tgatggtatt tacgtgttgc tcaaggaagt tctcgacaac tgtatcgatg
     9901 agtaccgcat gggtgccggc aggaacgtgg aagtacgtgt gaaagatggc catgtagagg
     9961 tgcgcgatta tgggcgcgga attccattgg gtaaaatggt ggaagctgtt tccattatga
    10021 ataccggtgg taaatacgat tctaaagcat ttaaaaagtc cgtaggtttg aacggggtgg
    10081 gaacgaaagc cgttaatgcg ctttcgtccc ggtttgtagt gcaaagtttc cgcgacggac
    10141 aaagccggcg ggccgaattt gaaaaaggaa aaattgtcag cgatacagat atttttgatg
    10201 aggctggttc agaacggggt acttacgtgt attttgttcc cgacaatacg cttttcaacg
    10261 attatatcta taaagaggag tatatcgaaa cgatgctccg caactacgcg tatctgaata
    10321 ccggactggc cataaacttc aacgggaagc gtattctctc caaaaatgga ttgacagact
    10381 tgttgaatga aaacatgacc tccgatccgt tgta
//
LOCUS       DATDNM010000434         2255 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1658632, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000434 DATDNM010000000
VERSION     DATDNM010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1658632"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..397)
                     /locus_tag="VI413_07395"
     CDS             complement(<1..397)
                     /locus_tag="VI413_07395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase related protein"
                     /protein_id="HEY6914484.1"
                     /translation="MSDQRYNLRGVSASKEDVHNAIKNIDKGLFPKAFCKIIPDFLGN
                     DPDYCNIMHADGAGTKSSLAYVYWKETGDISVWKGISQDALIMNIDDLLCVGATDNIL
                     LSSTIGRNKNRIPGEVISAIINGTNELVEE"
     gene            complement(522..>2255)
                     /locus_tag="VI413_07400"
     CDS             complement(522..>2255)
                     /locus_tag="VI413_07400"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF014499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEY6914485.1"
                     /translation="KTKAQKEYFQTKKQELNAQTFSDYQNVMNVKWEFFKIIYPQESP
                     AIFASYDYKQFFEANKEWLVPYAAFSYLRDLNGTPSFGKWAEYSVYNKAEIDALTSPN
                     QSHYNEISFYYFLQYHLHKQLVEVHDYARANGIAIKGDIPIGVSPRSVDAWVEPELFN
                     TNMQAGAPPDDFSATGQNWGFPTYNWELMEKDGYQWWRKRFQKLAEYFDAYRIDHVLG
                     FFRIWGIPVDAVWGLTGSFQPALPLTPEELHAKGLWWDEDRFLNPFLKEHVLYATFGK
                     YTDEVIREFLLPDGWQNYKFKPEFDTQKKIEKHFASLDYNFGNKEVLIRDGLYMLHCE
                     VIFVRDIHDSDKFHPRISMHSSATFRDLPDDTRRLLDRIYVDYFYHRHTEFWKQQALK
                     KLPALISATNMLVCGEDLGMVPDSVPDVMNSLEILSLEIQRMPKKPNTEFAMPSDAPY
                     RSVCTTSTHDMNPIRAWWEEDSALTQRFYNKALQMQGPAPATCEPWIAERIIEQHLDS
                     NAMLIILPWQDWMALESKLCLEHPFAERINVPSNPRNFWCYRMHMTLEKLLKETKFNK
                     KVTEMIAKSGR"
BASE COUNT          656 a          509 c          406 g          684 t
ORIGIN      
        1 attcctcaac cagctcgtta gtgccgttta taatggccga aatcacttct cccggaatgc
       61 ggtttttatt ccggccaata gttgaggaaa gaaggatgtt atcagtagca cccacacaca
      121 gcaaatcgtc gatattcata atcaacgcat cttgcgaaat gcctttccac actgaaatat
      181 caccggtttc tttccagtaa acataagcca gcgaagattt ggttccggca ccgtcagcat
      241 gcataatatt gcaataatca ggatcatttc ccaaaaaatc aggaattatt ttacaaaaag
      301 ccttgggaaa aagtccttta tcaatgtttt ttattgcatt gtgtacatct tctttcgacg
      361 cagatacgcc tcttaaatta tacctttggt cactcatttg tatattattg attggtttat
      421 cagttaatta gttgatttct ttatcacaaa tttgtcttcc ctacaattta catattatct
      481 tattagcaaa ttatctcatc agcccattat cacatcattg ttcatctccc cgattttgca
      541 atcatttcgg ttaccttctt attgaatttt gtttctttca atagtttttc caatgtcatg
      601 tgcattctgt agcaccagaa attacgcgga ttgcttggca cattaatcct ctcggcaaac
      661 gggtgctcca aacataattt agattccagt gccatccaat cctgccaggg caaaataatc
      721 aacatggcat tcgagtccaa atgttgctca ataatccgtt cggcaatcca aggttcgcag
      781 gttgccggtg ccggcccttg catttgcaat gccttattgt aaaaccgttg ggtcaaagca
      841 gaatcttctt cccaccatgc ccgaatcggg ttcatgtcgt gcgttgaagt tgtacatacc
      901 gaacgatatg gtgcatccga aggcattgca aattctgtat ttggtttttt aggcatccgc
      961 tgaatctcta aactcagaat ttccaatgaa ttcattacat ccggaacaga atcaggaacc
     1021 attcccaaat cttcgccaca aaccaacata ttggtagccg aaatcaaggc cggaagtttc
     1081 ttcaaagctt gttgcttcca gaattcagta tgacgatgat aaaagtaatc aacgtaaatc
     1141 cggtcgagca aacggcgggt atcatcaggt aaatcgcgga aagtagctga gctatgcatt
     1201 gagattcgcg ggtggaattt atcagaatca tgaatatcac gaacaaatat cacctcgcaa
     1261 tgcaacatat agagaccatc gcgaataagt acttccttat ttccaaaatt ataatcgagt
     1321 gaagcaaaat gcttctcaat ctttttctga gtatcaaatt ccggtttaaa cttatagttt
     1381 tgccagccat cgggcaatag aaactcacga attacttcgt cggtatattt tccaaatgta
     1441 gcatacaaaa cgtgctcttt caaaaacgga ttcaaaaagc gatcttcatc ccaccaaagt
     1501 cctttagcat gcaattcttc gggggtaagt ggcaaagcag gctgaaagct gcctgtcagt
     1561 ccccaaacag catctaccgg aatcccccaa atgcggaaaa agcccaatac atgatcaatt
     1621 cgatatgcat caaaatactc ggctaacttc tgaaaacgtt tccgccacca ctgatagccg
     1681 tctttttcca tcagttccca gttgtaagtt ggaaaacccc aattttgacc tgttgccgaa
     1741 aaatcatcag gcggcgcacc ggcctgcata ttggtattga aaagttccgg ttccacccac
     1801 gcatcaacgc ttcgtggact aactccaatc ggaatatccc cttttatggc aattccgttg
     1861 gcacgggcat agtcgtgaac ttccaccaat tgtttatgca aatgatattg aaggaaataa
     1921 tagaaggaaa tttcgttata atgtgattga ttcggcgatg tcagtgcatc aatttcagct
     1981 ttattgtaaa cgctgtactc cgcccattta ccaaacgaag gcgttccgtt taggtccctt
     2041 aaataggaaa atgcagcgta aggcaccaac cattctttat ttgcttcaaa aaactgtttg
     2101 taatcatagg aggcaaatat agccggactt tcctgaggat atatgatttt aaagaactcc
     2161 catttcacgt tcattacatt ctgataatca gagaatgtct gcgcattaag ttcttgtttt
     2221 ttagtttgaa aatattcctt ttgtgctttc gtttt
//
LOCUS       DATDNM010000435         2192 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_270532, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000435 DATDNM010000000
VERSION     DATDNM010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270532"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2192
                     /locus_tag="VI413_07405"
     CDS             <1..>2192
                     /locus_tag="VI413_07405"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6914486.1"
                     /translation="REIILDDKKDISIKVAGKEVPAVLDQVLAGKDLQYKIQGNTINI
                     IRKITTSSIGTPVTIKGTVVDESGEPLIGVSIFPKGSSTSARVTDMNGNFSMTIPAGS
                     VLSISYIGYLSQEVVVKDDKALKIQLSEDSKKLDEVVVIGYGTAQRKSLVGAVDQINA
                     KKIENRPVSNLTQALQGVAANLTIQSKSMNPNDNQMNINIRGVSTLNNNDPLIVIDGM
                     IASLSSLNQLNPSDIENVSVLKDAGSAAIYGSRSANGVILVTTKKGQIDSKPVIKMSS
                     LVGIQSPDVLFRPVAGFENALLKNEAAYNTGNPLPYSPEQIQDLQKNGANSQWFLDDI
                     LKNALQQNYNFSLSGGSKTSTYMVSAGYVSQNSNFVSGSNPSYGMDRYNFRTNLVNQY
                     GNFKLTTIMSYTRSESNAPNANVGNLMVDGSRIPNYYYYQQKAPNGHYLINDVLSQFT
                     PLASLESAGFNKYDTDYLNGSIGGEMKLFKGLTAKALVGLDLFANHRYSRSLSVSYYS
                     SADATMPAMIQNPIETTSDWNEKTSIINTQFLLDYDRTFGLHHVGGLLGVSNEARSGF
                     SNEISMNYVDPKLGIPTSQTTAEKGNITGKTTPMGTTLNDIASLFGRATYSYNDKYYG
                     ELSFRYDGSTKFGKGHHWGFFPSLSAGWRISSESFMESYKKNVGDLKFRGSYGVLGNQ
                     EIGNFNYLTTYTTYSNTYAFNGNAVNGAGFRLGNPIISWEQSASFNIG"
BASE COUNT          699 a          410 c          478 g          605 t
ORIGIN      
        1 agggaaataa tcctggatga caaaaaagat atttcaatca aagttgccgg aaaggaagtt
       61 cctgcagtac tggaccaggt gttggcaggc aaagaccttc agtacaaaat acagggaaat
      121 acaattaata tcattcggaa aattacaacc agttcaatag gaacacctgt taccataaaa
      181 ggaacggtag ttgatgaatc gggtgagccg ctaattggtg ttagcatttt tcccaaaggc
      241 tcgtcaacat ctgcccgggt aacggatatg aacggtaatt ttagcatgac catacccgcc
      301 ggctccgtgt tatctatatc ttatataggt tatctttcgc aggaagttgt ggtaaaggat
      361 gacaaagctt taaagattca actgtcggaa gattctaaaa aactggatga agtggttgta
      421 ataggttacg gtactgccca gcgtaaaagt ctggtcggcg ctgtggacca gatcaatgca
      481 aaaaaaattg aaaaccgtcc ggtatctaat ctaactcagg cccttcaggg ggtagccgcc
      541 aatcttacta ttcaatcgaa gagtatgaac cccaatgaca atcagatgaa tatcaatatt
      601 cggggggtca gcacattaaa taacaacgat cctttgattg ttattgatgg catgattgcc
      661 agtcttagca gtttaaatca attgaatcca tcagatattg aaaacgtttc agtgttgaaa
      721 gatgccggta gtgctgccat ctacggatcg cgttcggcaa atggtgttat tttagtaaca
      781 actaaaaaag gacaaattga ctccaagcca gtaataaaaa tgagttctct ggttgggatt
      841 caaagcccgg atgtattgtt tagacctgtt gccggatttg aaaatgcatt gttgaaaaat
      901 gaagctgcat acaacaccgg aaatccgctt ccatattcac ccgaacaaat tcaggatttg
      961 caaaaaaacg gtgcaaatag ccaatggttt ctggatgaca ttttaaaaaa tgcattgcaa
     1021 caaaattata atttcagttt aagtggaggc agcaaaactt ctacttatat ggtttctgcc
     1081 ggttacgtaa gccaaaacag taattttgtg tcaggtagca atccaagcta cggcatggac
     1141 cgttataact tcagaacgaa cctggtaaac cagtatggta attttaaatt gacaaccatt
     1201 atgtcataca cccgttcgga atctaacgct ccgaatgcta atgtaggtaa tttgatggtt
     1261 gacggtagtc gtattccgaa ttattactac taccaacaaa aagcacccaa tgggcattac
     1321 ctgatcaatg atgttttgtc gcagtttaca cctttggctt cgctcgaatc agctggtttt
     1381 aataagtacg atacagatta cctgaatggt agtatcggcg gtgaaatgaa gctttttaaa
     1441 ggcttgactg caaaagcatt ggttggactc gacttatttg caaatcacag atacagcaga
     1501 tcgttgtcgg tttcatacta cagcagtgca gatgccacca tgccggcgat gatacaaaat
     1561 ccgatagaga ctacaagtga ctggaatgaa aaaaccagca tcattaatac gcagttcctg
     1621 ctggattatg atcgtacatt tggactacat catgtaggtg gattactagg ggtgtcaaac
     1681 gaggctcgtt ctggtttttc caacgaaata tcgatgaact atgtcgatcc taagcttgga
     1741 attccaacct cacagactac tgctgaaaaa ggtaatatta ccggaaaaac aacccctatg
     1801 ggaacaacat tgaatgatat tgcctcgttg tttggaagag ctacatattc atacaatgat
     1861 aagtattatg gggagttgag tttccgttac gatggctcaa ctaaatttgg aaaaggtcac
     1921 cattggggat ttttcccatc gctgtccgct gggtggagaa tttcaagcga atcatttatg
     1981 gaatcctata agaaaaatgt aggtgatttg aaattcagag ggtcgtatgg agtgcttggg
     2041 aaccaggaaa ttggcaattt taactatctc actacataca caacttatag caatacttat
     2101 gcatttaacg gaaatgctgt aaatggagcc ggattcagat tgggaaatcc aattatcagt
     2161 tgggagcaat ccgccagctt taatatcggg tt
//
LOCUS       DATDNM010000436         2456 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1124076, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000436 DATDNM010000000
VERSION     DATDNM010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1124076"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(2..75)
                     /locus_tag="VI413_07410"
     tRNA            complement(2..75)
                     /locus_tag="VI413_07410"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(39..41),aa:Met,seq:cat)
     gene            complement(228..2345)
                     /locus_tag="VI413_07415"
     CDS             complement(228..2345)
                     /locus_tag="VI413_07415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004317268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY6914487.1"
                     /translation="MKQLIVTILSLLLMSTAFSEQKITYPNTFEGNTVDTYFGVPVKE
                     PYRWLENDTSAATSAWVKEQNKVTGNYLAQIPFRQDLKKRLTALTNYAKYSSPFKKNG
                     QYFFYKNNGLQNQSALYRQKSLNSEAELLLDPNTFSTDGTVALANIAFSKNGKYLAYS
                     IARSGSDWNEIFVLDVETRLLLSDHIKWSKSSEIYWQGNGFYYSAYDAPEAGKEYSVK
                     NEYQKVYYHTVGQDQKQDKLIYEDKQHALRECYASLTGDEKLLFITITETTTGNSLLM
                     KDLSKTDTQFTELAPGFDNDYKVIDLVNGKLYLLTNWKAPKNRLMEVDPANPTRENWK
                     VIIPETENVLEEASIIGGKIVAEYMQDATNHLYGFDMTGKKLYEVQLPTLGSVTDLTG
                     SNDDSEAFYVFTSFTFPPTIYLLDAAKNTSSIFYKTEVSFNSNDYVSKQALFTSKDGT
                     KVPMTITYKKGMKKDGKNPLLLYGYGGFNISLVPNFNVSRIPFLENGGIYVVANLRGG
                     GEYGEAWHMAGTKLKKQNVFDDFISAAEYLIANKYTCKQKLAIDGGSNGGLLVGACLT
                     QRPDLYAVAIPEVGVLDMLRYHLFTIGWSWASDYGTSAESKEMFEYLKGYSPLHNVKA
                     GVKYPATMVMTGDHDDRVVPAHSFKFAATLQASNSSNKPTLIRIDSKAGHGAGKPIGK
                     QIEAQTDMWSFVMWNLGMQPIFN"
BASE COUNT          663 a          485 c          495 g          813 t
ORIGIN      
        1 gtagcgggaa cgagagttga actcgtgacc tccgggttat gaatccgacg ctctaaccaa
       61 ctgagctatc ccgccatttt tctaaagcgg tgcaaagata ggctttttag ctcgtttggc
      121 aaacacttta gaataaaaaa atctaatttc gagttgaaaa tttaaattgg ttatatataa
      181 ttgactgata tataagtgat aattgtaaac tgtaaattgt aaaattgtca attgaatatg
      241 ggttgcatgc ccaaattcca cataacaaat gaccacatgt cggtctgggc ttcgatttgt
      301 ttgcctatcg gtttgcccgc accgtgtccg gctttggagt caatgcgtat caatgttggc
      361 ttgttgctgc tgtttgaagc ttgcagagta gccgcaaatt tgaacgaatg tgccggtact
      421 acgcggtcgt catgatcgcc cgtcataacc atggtggccg gatattttac tccggctttt
      481 acgttatgta gtggtgagta acctttcagg tattcgaaca tttctttact ttcagcactg
      541 gttccatagt cgctggccca cgaccaaccg atggtaaaca gatggtaacg aagcatatcc
      601 agcacgccca cttcggggat agctacagca tataaatcgg gtcgttgggt caggcaagcg
      661 cccaccagta agccgccgtt agagcctccg tcaatagcta atttttgttt gcaggtgtac
      721 ttgttggcaa taagatattc ggcagcggaa ataaaatcat caaaaacatt ttgttttttc
      781 agcttcgttc cggccatatg ccatgcttcg ccatattcgc cgccaccccg cagattggct
      841 accacataaa ttcctccatt ttctaaaaat ggaattctgg atacattaaa attaggaacc
      901 agacttatat taaacccgcc atatccgtag agcagcaatg gattttttcc atcctttttc
      961 atgccttttt tataggtaat agtcattggc acttttgttc catctttgct tgtaaataga
     1021 gcttgtttgc ttacataatc attactgttg aatgaaactt ccgttttgta aaaaatactt
     1081 gatgtgtttt ttgctgcatc aagaagataa atagtgggag ggaaggtaaa ggatgtaaac
     1141 acatagaacg cttcactatc atcgttgcta ccggttaaat cggttacaga tccgagagtt
     1201 ggtaattgca cttcgtagag ttttttacct gtcatatcaa atccgtatag atgattagtg
     1261 gcatcttgca tatattctgc aactattttt ccgccaataa ttgaagcctc ttccaacaca
     1321 ttttcagttt caggtataat tactttccag ttttcgcgtg tcgggtttgc cgggtctact
     1381 tccattaagc ggtttttagg tgctttccag tttgtgagca ggtataattt accgttaact
     1441 aaatcaataa ctttataatc gttatcaaat cctggggcta attccgtgaa ttgagtatca
     1501 gttttcgaca agtctttcat taataagcta tttccggttg ttgtttcggt gatggtgatg
     1561 aaaagtaatt tttcatcacc tgttaggctg gcgtaacact cgcgaagtgc atgttgcttg
     1621 tcttcgtaaa tcagtttgtc ctgcttctga tcttgtccaa cagtatgata ataaactttc
     1681 tgatactcgt tttttactga atattctttt cccgcctcgg gagcatcata agcgctgtaa
     1741 taaaacccgt tgccctgcca gtaaatttcc gaagattttg accatttgat atgatcggaa
     1801 agtaacagcc gggtttcaac gtccaaaacg aaaatctcat tccagtcaga accacttcgg
     1861 gcaatagagt aagccagata tttgccgttt tttgaaaacg caatgttggc taatgcaact
     1921 gttccatcgg ttgaaaacgt atttgggtcg agtagtaatt ccgcttcgga attcaatgac
     1981 ttttggcgat ataaagcact ctgattctgt aatccgttgt ttttataaaa gaaatactga
     2041 ccgtttttct taaatggaga actgtatttg gcataattgg ttaaagctgt caaacgcttt
     2101 ttcaagtcct gccgaaaagg tatttgagca agataattac ccgtaacttt attttgctct
     2161 ttcacccatg cagaagttgc cgccgaggta tcattctcta gccaacgata tggctctttt
     2221 accggaacac caaaataggt atcaacagtg tttccttcaa aggtatttgg gtatgttatt
     2281 ttttgttcag aaaaagctgt tgacataagt agcaatgata aaattgttac gattaactgt
     2341 ttcatatata cgtgatttta atcggtgtgt taagaagtga ttcggtgtta atgggcttgg
     2401 tttaatccaa attcttttgc aatttcaagc atatacgtac gtgccgcttc atattc
//
LOCUS       DATDNM010000437         2765 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1124117, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000437 DATDNM010000000
VERSION     DATDNM010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2765
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1124117"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(383..1837)
                     /locus_tag="VI413_07420"
     CDS             complement(383..1837)
                     /locus_tag="VI413_07420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914488.1"
                     /translation="MRKAHFFKTLLIAIIWLTVTATSNTTQGRTPDPTRAIGVLENST
                     PNYSHAEISNYKKSSSKIQNITNNSEISPTFTITETTIPDFSANLGNSDNQTVNLSGV
                     NLSENISMTISGANANEFALSQSAIFQTDSIAPNTTITVSYSPTTTGIHKATLICSSA
                     GATNLTIPLIGTSGLDNPIASPATNISKSGFRANWNTVPGSTEYLLAVHFTPDNPFEQ
                     ISEGFTSGTNPPFRWTFTGIAATYTNSGIYGAASPSLRFDATGDAVTTPVLPSAATEM
                     KFWLKGLSAAGSSLLVEGYDGSSWIQIDNIITPSSTAKTYLYNATSTPKLPYGMIQFR
                     YTYTKVSNNIALDDVSFTYRGASTLPIEGSPFTVNGATNMEFTGLHEATNYYYSVTAK
                     NATAATAVSNEIHVSTLAIYTDIEKTHTTSDITAANGIIKLTALQSETVEVYNAIGQK
                     LLRQHATKGLNEISLTARGLLIVKAGNRTAKIIL"
     gene            complement(2026..2250)
                     /locus_tag="VI413_07425"
     CDS             complement(2026..2250)
                     /locus_tag="VI413_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6914489.1"
                     /translation="MPIIVNLDVMMARRKISLNELSEKVDITPANLSILKTGKAKAIR
                     FSTLEAICMVLDCQPADILEYQSHPIKQKK"
     gene            complement(2282..>2765)
                     /locus_tag="VI413_07430"
     CDS             complement(2282..>2765)
                     /locus_tag="VI413_07430"
                     /inference="COORDINATES: protein motif:HMM:NF022636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HEY6914490.1"
                     /translation="KDYNYLDNSEINLKTGEKVLVRPNNMTILVQSLPNKPVWWIPLQ
                     IIYGIFTTSILVFGIWIPFLVVKIIRSLQHSEVFDRNNLKRINRIGIILLITGLLGTA
                     TQAINTFSAQTIVNLSHYNFSYSKTIEFYPIIMGVVILIMNEILRIGTEMKEEQDLTI
                     "
BASE COUNT          802 a          428 c          567 g          968 t
ORIGIN      
        1 agcatcattt taaaaaaagt aatttttctc atgtttaatt ttttaaagag ttagtataat
       61 atgttttttg ttctcaaaat tagggagtat ttgttataga tgaattaata tcgtatgaag
      121 gtttaattaa atggaaatta aataaaaatt catgaacgac aaatatagta aaattttcta
      181 aaaaagaaat aaatatacat ggaatttgta tattatttga tggtgaaaac gaacatgtat
      241 aaagaaagca gctatttggg ataagtggtt atttaattcc cgaaattaga atgtaattta
      301 aaacagaaaa ggttgcctga attggcaacc ttcaacaatg caaaccttct aatcaatttc
      361 tcacttcaaa agcggggctc ttttacagga ttatctttgc tgtacggtta cctgctttta
      421 caatcaataa gcctcgggca gttaatgata tttcatttag tccctttgtt gcatgttggc
      481 gaagtagttt ctggcctata gcattatata cttcaactgt ctcgctttgt aaagcagtaa
      541 gtttgattat cccatttgca gcagttatat cagatgtcgt atgtgttttt tcaatatcag
      601 tataaattgc tagtgttgat acgtgtattt cattcgatac tgcagttgct gcagttgcat
      661 ttttggcagt cacactgtaa taataattgg ttgcttcatg caatccggta aattccatgt
      721 ttgttgctcc gttaactgta aatggtgaac cctcaattgg taatgtcgaa gccccccggt
      781 atgtgaaaga aacatcatct aaagcaatgt tatttgatac tttggtgtag gtgtaacgga
      841 actgtatcat gccataaggc aacttgggag tggaagttgc attgtaaaga tatgtttttg
      901 ctgtgcttga gggtgtaatg atattgtcta tctgaatcca tgatgaaccg tcatagcctt
      961 caacaagtaa tgaactgcct gctgctgaaa gacctttcaa ccaaaacttc atttctgttg
     1021 cagcacttgg caatactggt gttgtaactg catcgcctgt tgcatcgaag cgaagtgagg
     1081 gagatgctgc tccataaata ccggaattgg tatatgtagc cgctatgccg gtaaaagtcc
     1141 atctaaatgg tggatttgtg ccggaagtaa agccttccga gatttgttca aaagggttgt
     1201 caggtgtaaa atgtaccgct aaaagatatt ctgtagagcc gggcactgta ttccagttgg
     1261 ctctgaatcc cgatttcgaa atgttggttg ccggactggc aatcgggtta tccaatcctg
     1321 aagtcccgat taatggaatg gtcagatttg tggctcctgc acttgaacag attagtgttg
     1381 ctttgtgtat tccggttgtg gttggtgaat acgacactgt gatcgtagta tttggtgcaa
     1441 tgctgtcagt ttgaaatatg gctgattgag acagcgcaaa ctcattggca tttgctccgg
     1501 aaatggtcat tgaaatattt tccgataaat ttacaccgct tagattcacc gtttgattgt
     1561 ctgaatttcc taaattggca gaaaaatcag gaatggttgt ttcagtaatt gtaaaagttg
     1621 gactgatttc tgaattattc gtgatgtttt gtatttttga gctacttttc ttataattag
     1681 atatttctgc atgcgaataa tttggtgttg aattttcaag taccccaatc gcgcgagttg
     1741 gatccggggt tcttccttga gttgtatttg aggttgctgt aacagtcaac caaataatgg
     1801 ctatgagcaa tgtcttaaaa aaatgggctt ttctcatatc cttatgaatg gttggaacta
     1861 tatctttatt cgaaatcgat gaaaaatgta ggttttttat atcatgcttt caaaatgaat
     1921 atgaactctc agaaaatatt caaagccaat atgattataa aaattcattt atattataac
     1981 gtgacttgtc gagaatatgt tcacgatatg atttctatgt ccgccttatt tcttttgttt
     2041 aatggggtgg ctttgatatt ctaaaatatc agcaggttga cagtcgagta ccatgcagat
     2101 agcttcaagg gtactgaagc ggatggcttt tgcttttccg gttttcaaga tggatagatt
     2161 ggcgggcgta atgtccactt tttctgatag ctcattaagc gaaatttttc gccgggccat
     2221 cattacatcc aaattgacta ttataggcat atttttttat gattagctgt tgtagtattt
     2281 tctatatggt taaatcttgt tcttctttca tttcagttcc aattcgaaga atttcattca
     2341 taattaggat gacaactccc atgataatag gataaaattc aattgttttg gaataggaaa
     2401 aattgtagtg agacagatta actattgttt gagcggaaaa tgtgtttatt gcctgagttg
     2461 ctgttcccaa tagaccggtg ataagtagaa taataccaat acgattaatt cgtttcagat
     2521 tgtttcggtc aaaaacttca gagtgttgca atgatcggat gatttttacg accagaaatg
     2581 gaatccaaat tccgaatacc agaatacttg tggtgaaaat accgtagatg atttgtaatg
     2641 gtatccacca tactggcttg ttaggcaaag attgtacaag aattgtcata ttgtttgggc
     2701 gcaccaatac tttttctcct gttttgaggt tgatttcaga attgtcaaga tagttatagt
     2761 ctttt
//
LOCUS       DATDNM010000438         3340 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1765166, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000438 DATDNM010000000
VERSION     DATDNM010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3340
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1765166"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1097)
                     /locus_tag="VI413_07435"
     CDS             complement(<1..1097)
                     /locus_tag="VI413_07435"
                     /inference="COORDINATES: protein motif:HMM:NF039698.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6242 domain-containing protein"
                     /protein_id="HEY6914491.1"
                     /translation="MKLNFFRFTLLFSFIGFLTSCLGTTETTAVSSDASFVSLTLAKN
                     DSVKSAVFTLVGDTIVNLDSLPFNTKVDAVYPTFSFKSTAAIHVIFPMGSKKDSVSIT
                     GKDTIDFTQVVGVRNYASDKKASKLYYVKVNVHKVQPELYVWNKVSENFDSHNATSQK
                     AIIFNDTIFYYLNNGSAAYLYKSTDGKSWEEQSVVGLPVNTSLTDMQLFNGKFYLTQD
                     GDKIYSSSNRRNWTAMSDVDCNFISLLFVFQNKLWAVTQSKANSKYYFRTFDGNSLEK
                     WSDFSSNEIPANFPIRDFASLSFASRTGKPKVLLVGGYSVDNKELKTRWSSENGVYWV
                     DFSVENRTLDSLLIGSSVISYDKNLLLFGKG"
     gene            complement(1277..2038)
                     /locus_tag="VI413_07440"
     CDS             complement(1277..2038)
                     /locus_tag="VI413_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008765510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEY6914492.1"
                     /translation="MKIISYNVNGIRAALTKNFTEWLQAENPDVLCLQETKAQPDQID
                     TMLFAELGYTSYLHSAEKKGYSGVAILTKEAPDNVVIGMDHSRYDNEGRVIRADFGDL
                     SIISVYIPSGSSGDERQAFKMDFLAAFAPFVAELRKTRPNLIICGDYNICHKPIDINH
                     PERQVGVSGFLPEEREWLDQFEASGMVDSFREFDKSPEKYSWWSYRGGARFRNAGWRI
                     DYHWVTEPLRERLKSAAILDDAVHSDHCPVVVELD"
     gene            complement(2035..2793)
                     /locus_tag="VI413_07445"
     CDS             complement(2035..2793)
                     /locus_tag="VI413_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008622389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6914493.1"
                     /translation="MIEVKNVDKSFEGNHVLRNVSAIFETGKTNMIIGQSGSGKTVLM
                     KSIIGLHRIDKGRIEYDGRNLPEMQMSDIRMLRREVGMLFQGSALFDSLTVLENVMYP
                     LEMFASTTAEEMTERAIFCLKHVNLPEKSFGLAPSEISGGMQKRVAIARAIALQPKYL
                     FCDEPNSGLDPKTSLIIDQLIHEVTHEFDITTIINSHDMNSVMEIGENIIFINKGEMA
                     WQGNKDDIFHVDNEALNDFVFASELYKQVKKANQ"
     gene            complement(2824..>3340)
                     /locus_tag="VI413_07450"
     CDS             complement(2824..>3340)
                     /locus_tag="VI413_07450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6914494.1"
                     /translation="GLVTRDTLLLEFSSTILCLILAGKVGSNIASEIGTMRITEQIDA
                     LEIMGVNSANYLILPKIIAFVLMMPFLVVFSMALGLGGGYFVGVLTNIMTTGDYLIGI
                     QYAFIPFYITYSLLKSMLFAFIISSVAAYYGYYSYGGALDVGKSSTNAVVNGSILILF
                     FNILITKLMLN"
BASE COUNT         1094 a          742 c          569 g          935 t
ORIGIN      
        1 atccctttac cgaaaagcag caagtttttg tcataagaaa tcacagaaga accgatcagc
       61 aatgaatcaa gtgttctatt ttcaacacta aaatcaaccc aatacacacc attttcggag
      121 ctccatctgg ttttcaactc cttattatct acagaatagc ctccaacaag caagaccttt
      181 ggtttacctg tgcggcttgc aaatgacaaa gatgcaaaat cacgtattgg aaaattagcc
      241 ggaatctcat tggaagagaa atcgctccat ttttctaagc tatttccatc gaacgttcta
      301 aaataatatt ttgaattcgc ttttgactga gtaacagccc ataatttatt ttgaaaaacg
      361 aaaagtaaag agataaaatt acaatctaca tcactcattg cagtccagtt gcgacgattg
      421 gaacttgaat aaattttatc gccatcctgg gtcaaataga actttccatt gaataattgc
      481 atatcggtga gcgacgtatt taccggcaaa ccaacaacag attgctcttc ccatgatttt
      541 ccatccgttg atttatacag ataagcggca gaaccattat tcaaataata aaaaatcgta
      601 tcgttaaaaa taatcgcttt ctgactggta gcattatgtg aatcaaaatt ttcagagact
      661 ttattccaaa catacaattc gggttgaacc ttatgcacgt ttactttaac ataatatagt
      721 ttactcgcct ttttgtcaga ggcataattt ctcactccga caacttgcgt aaaatcaata
      781 gtatcttttc ctgttattga aacagaatcc ttcttagaac ccatagggaa aatcacgtgg
      841 atagcggcag tactcttaaa actaaacgtt ggatatacag catcaacttt agtattgaaa
      901 ggcaaagaat cgagatttac aatagtatct cctaccaaag taaaaacagc cgactttacg
      961 gagtcatttt tagccaaagt cagtgataca aaacttgcat cactcgaaac agcagtagtc
     1021 tcagttgttc ccaggcaaga tgtcagaaaa ccgataaacg aaaaaagcag agtaaacctg
     1081 aaaaaattca atttcataag acatttttta tcgacgaata tttaaataac gagcaaagtt
     1141 aaaaatattt taggtcatat aaaccactct gccaaagttt tatcattttt tatcattcaa
     1201 agcaagataa ataccagccc tgagtaaaaa atcacgcgta atccggttca aaatctttgt
     1261 acccaaataa aacagcttag tccaattcaa caacaacggg acaatgatcg gagtgcacag
     1321 catcatccag tatggctgcc gatttcaacc gttcacgaag cggctcggta acccaatgat
     1381 agtcgatacg ccagcccgca ttgcgaaaac gtgccccacc ccggtaactc caccagctgt
     1441 atttttcagg actcttatca aattcacgaa acgaatcgac cattccggat gcttcaaact
     1501 gatctagcca ttcgcgttcc tccggtaaaa aaccggaaac tcctacctga cgttccggat
     1561 gattaatatc aataggctta tggcaaatgt tatagtcgcc acaaattatc aggttcgggc
     1621 gcgttttacg tagctccgcc acaaagggtg caaaagcagc caggaagtcc attttaaaag
     1681 cctgacgctc atcgcccgac gagccggaag gtatgtaaac actgataatg gacaaatcgc
     1741 caaaatcggc gcgaataacc cgcccttcat tatcgtaacg cgaatgatcc attccaatta
     1801 ccacgttatc gggtgcttct ttggtgagga tagctacacc actatatcct tttttttcgg
     1861 cagaatgcaa atagctggta tatcccaact cggcaaaaag catggtatct atctgatccg
     1921 gctgagcttt cgtctcctga aggcaaagca catcagggtt ttcggcctga agccattcgg
     1981 taaaattctt tgttagtgcg gcacgtatac catttacatt gtaggaaata atcttcattg
     2041 attcgctttt tttacttgtt tgtataactc cgacgcaaaa acgaaatcgt tgagcgcctc
     2101 attatcaaca tgaaaaatat catctttgtt cccctgccag gccatttccc ccttgttaat
     2161 aaaaattata ttctcgccaa tttccattac cgagttcata tcgtgcgagt taataatagt
     2221 agttatatca aactcgtgag ttacttcgtg gataagttgg tcaataatca atgatgtttt
     2281 ggggtcgagt ccggagtttg gttcatcgca aaacagatat tttggctgta acgcaatggc
     2341 acgggcaatg gctacacgct tttgcatacc tccactgatt tccgaaggcg ctaacccaaa
     2401 ggatttttcc ggcaaattaa catgcttcag acaaaatata gcgcgttctg tcatttcctc
     2461 agccgtagta gaggcaaaca tttccagcgg atacattaca ttttcaagaa cagtcagcga
     2521 atcgaagagt gcagaaccct ggaaaagcat tcctacctcg cgacgcaaca ttctgatatc
     2581 actcatctgc atctccggca agttacgccc atcatattca atacgtcctt tatcgatgcg
     2641 gtgcagccct ataatgctct tcatcaaaac agtttttccg gaaccgctct gtccgataat
     2701 catatttgtt tttcctgttt caaaaattgc tgaaacattt ctcaaaacat ggttgccctc
     2761 aaaggattta tctacatttt ttacttcaat cattttattt cctgtataaa accttgagaa
     2821 gggttagttc aacataagtt tggtgataag aatattgaaa aacagaatca aaatacttcc
     2881 gtttaccact gcatttgtac tcgatttacc cacatcgagc gcacctccgt aagaataata
     2941 cccgtaataa gcagccaccg aagaaataat gaaagcaaaa agcattgatt tgagtaatga
     3001 ataagtaata taaaatggaa taaaggcata ttgtattcca ataaggtaat ccccagtagt
     3061 cataatattt gtaagaaccc cgacaaaata tccgccaccc aaacctaaag ccatactgaa
     3121 tacgaccaaa aaaggcatca tcaatacaaa agcaattatt tttggtaaaa tgagataatt
     3181 tgctgaattt acacccataa tttcgagagc atcaatctgc tcggtaatac gcatagtacc
     3241 aatttcggag gcaatatttg aacctacttt tccggccagg ataagacaca aaatagtaga
     3301 cgaaaactcc agcaacaatg tatcacgcgt caccaaacct
//
LOCUS       DATDNM010000439         2009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_271005, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000439 DATDNM010000000
VERSION     DATDNM010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271005"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..360
                     /locus_tag="VI413_07455"
     CDS             <1..360
                     /locus_tag="VI413_07455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914495.1"
                     /translation="LSSETFEQEIQSLHFTLQLVPRSKRKVTASGSFFDTIKYHKPYL
                     SLDNEYIDYFHSKQPNSGVMFNSIKEMGNYIKQLLNTDVEALEKQYQNSINSIQNLQQ
                     ILSLSNIAERFKQQIIK"
     gene            593..1528
                     /locus_tag="VI413_07460"
     CDS             593..1528
                     /locus_tag="VI413_07460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004369945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY6914496.1"
                     /translation="MKILITGGAGFIGSHLCDTLWKQNHNIVVIDNLILGKLENINHL
                     IESDRFQFFKEDLLNIDKLQQIFEEHSFEMVFHLAANSDIQKGGKDPETDYNLTFKTT
                     FNVLQCMKEFNVKKIFFASTSAIYGETTELLTENFGPLQPVSNYGAGKLASEAFISAF
                     SATYNIQTWITRFPNVVGERFTHGVIYDFIHKLKSNPLELLVLGNGEQNKPYLYVKDL
                     VEGILFVCNNSHAQFNVYNLGSYSRTKVKEIAQMVIEEMELNATIKYTGGDRGWVGDV
                     PEFKYDLTKINSLGWEAKINSNDSVRIAIQKALGK"
     gene            1525..>2009
                     /locus_tag="VI413_07465"
     CDS             1525..>2009
                     /locus_tag="VI413_07465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008774507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY6914497.1"
                     /translation="MKIVIIAGGKGTRIASIANEIPKAMIPINGKPVIEYQIELAKRY
                     GFVDFIFIIGHLGEQIETYFGDGSDWDVKITYFKETQSLGTAGALAYLTEDLTEDFFV
                     FYGDTVMDIDMDRMLHYHHINESDATLLIHPNDHPYDSDIVDINDDGRVRMFYNKPHQ
                     PG"
BASE COUNT          750 a          312 c          329 g          618 t
ORIGIN      
        1 ttaagctctg aaacttttga acaagaaata caatcattac attttacact acaattggta
       61 ccacgatcaa aaagaaaagt aactgctagt ggatcatttt ttgatactat aaaatatcac
      121 aagccctatt tatcccttga taatgaatat atagattatt ttcattcaaa acaaccaaat
      181 agcggagtaa tgtttaattc aataaaagag atggggaatt atataaaaca attactgaat
      241 actgatgttg aggcacttga aaaacaatat caaaattcaa ttaattcaat tcaaaactta
      301 caacaaattt tatcattatc aaatattgct gaaagattta aacaacaaat cataaaataa
      361 tttacaaatt cagatttatc cctcgtcgta tctataatta aacaattaga acaaacacca
      421 aagaatttac gtcaatttaa aagccgctat atcttactag atcctcttgt ttgctttaaa
      481 acaaatactt gattttgtaa ataaaaaaga gatagagtca tattctcccc acatatagtt
      541 gagtgattat gttttatata gaaattctat tggataacta aaaataatga aaatgaaaat
      601 acttattacc ggaggagcag gttttattgg ctctcattta tgtgacactt tatggaagca
      661 aaatcataat attgtagtaa ttgataactt gatactcgga aaattagaaa atattaatca
      721 ccttatagaa tctgatagat ttcaattctt caaagaagac cttttaaata tagacaaatt
      781 acaacaaatc tttgaagaac actcatttga aatggttttt catttagcgg ctaattccga
      841 catacaaaaa ggtggtaaag atccagaaac cgactacaat ttaacattta aaaccacttt
      901 taacgttttg caatgtatga aagagtttaa tgtgaaaaaa atattttttg catcaacatc
      961 tgcaatttat ggagagacca ctgaactact aacagagaac ttcgggccat tacaaccagt
     1021 atccaactat ggagctggca aattggctag tgaagctttt ataagtgcct tcagtgctac
     1081 ttataatatt caaacctgga taacccgatt ccctaatgtg gttggagaac gttttactca
     1141 tggtgtaatt tacgatttca ttcacaaatt gaagagtaat ccactggagc ttttagtttt
     1201 ggggaacggc gaacaaaata aaccctactt atatgtcaaa gacctcgtag aaggaattct
     1261 ttttgtatgc aacaactctc acgcacaatt caatgtctac aacttaggtt cctactcaag
     1321 aacaaaagtt aaggaaatag cacagatggt gattgaagaa atggaactga atgcaaccat
     1381 taaatataca ggtggcgata ggggctgggt tggagatgta cctgaattta aatatgactt
     1441 gactaaaata aatagtttag gctgggaggc aaagattaac tctaacgatt ctgtacgcat
     1501 tgcaattcaa aaagcccttg gaaaatgaag atagtaatta ttgcaggagg taaaggaaca
     1561 agaattgcgt caattgccaa tgaaataccc aaagccatga ttcctattaa tggtaaaccc
     1621 gttatagaat atcaaatcga attagcaaaa cgatatggat ttgtagattt tatatttatt
     1681 atcggtcatc ttggtgaaca aattgaaaca tattttggag atggctctga ttgggatgta
     1741 aaaattacat atttcaaaga gactcaatca ttaggaacgg caggagcttt ggcttattta
     1801 accgaagatt taaccgaaga tttttttgtt ttttatggtg ataccgtaat ggatattgat
     1861 atggacagaa tgttgcatta tcaccatata aatgaatctg atgcaacatt acttatacat
     1921 cccaatgatc atccgtacga ctcggacatt gtggatatta atgatgatgg tcgagtgaga
     1981 atgttttaca acaaaccaca tcaaccggg
//
LOCUS       DATDNM010000440         2590 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1872730, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000440 DATDNM010000000
VERSION     DATDNM010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1872730"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..255)
                     /locus_tag="VI413_07470"
     CDS             complement(<1..255)
                     /locus_tag="VI413_07470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008619282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase domain-containing protein"
                     /protein_id="HEY6914498.1"
                     /translation="MKAYVFPGQGAQFEGMGKDLYDQSPLAKEYFEKANEILGYRITD
                     IMFEGTPEDLKQTKVTQPAVFLHSVISALVLGEDFKPEMVA"
     gene            558..1178
                     /gene="rsmG"
                     /locus_tag="VI413_07475"
     CDS             558..1178
                     /gene="rsmG"
                     /locus_tag="VI413_07475"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008022144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEY6914499.1"
                     /translation="MEQLLKYFPDLTSTQKAQFEALYDLYFEWNSKINVISRKDIENL
                     SEHHVLHSLAIAEIIRFQPGSTVLDVGTGGGFPGIPLAILFPETNFVLIDSIGKKIKV
                     GNEVSTAIGLRNITLKHSRVQEEKGKYDFVVSRAVMPLGDLVKLVQKNVSKKHINALP
                     NGLICLKGGELQHEMQPYKNIAELYDVSNFFKEEFFKTKKAVYVPL"
     gene            1211..1846
                     /locus_tag="VI413_07480"
     CDS             1211..1846
                     /locus_tag="VI413_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6914500.1"
                     /translation="MIIKTFTFNPFQENTFILHDETNEAVIIDAGCFNDGEKRLIEHY
                     FEENKLSLKRLINTHLHLDHQFGNKFIFDTFGVAPEAGQEDEFLLGNVAAQARSFGLP
                     FNEEAQPLSTYITENQEIKFGNSSLIAIHVPGHSPGSMAFYSEKDGVLFAGDVLFQGS
                     IGRTDLVKGDYATLISSITKKLLTLPDSTVVYCGHGPTTTIGNEKRNNPYL"
     gene            complement(1848..2459)
                     /gene="nadD"
                     /locus_tag="VI413_07485"
     CDS             complement(1848..2459)
                     /gene="nadD"
                     /locus_tag="VI413_07485"
                     /inference="COORDINATES: protein motif:HMM:TIGR00482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_function: GO:0004515 - nicotinate-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEY6914501.1"
                     /translation="MKSEQGLINQTKKRIGVYSGSFNPIHLGHQKLAEYLVDNKYVDE
                     VWFVVSPCNPLKNQSDLLDEYLRLDMLMLAIRNNPNFKASDVEFTMPIPSYSIDTLHE
                     LKSQFPDYQFELIIGSDNALVFDQWKNHLQLLNEFPVLVYPRRGFDFVEVADKYPQMQ
                     LLDTPFYDISSSLIRDFIGRKKDASQWLHPSVYEFIIENNLYQ"
     gene            complement(2475..>2590)
                     /locus_tag="VI413_07490"
     CDS             complement(2475..>2590)
                     /locus_tag="VI413_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005826973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEY6914502.1"
                     /translation="ADFEMTFAPDFDLVIVNDDLETAKKEAENAIREFLNK"
BASE COUNT          895 a          440 c          438 g          817 t
ORIGIN      
        1 tgcaaccatc tctggtttaa agtcttcgcc cagtactaat gcagaaatca cagaatgaag
       61 aaacacagct ggttgggtta ctttagtttg tttcaaatct tcaggagttc cttcaaacat
      121 tatgtctgtg atacggtatc caagaatttc gtttgctttt tcgaaatatt ccttagctaa
      181 aggcgattga tcatacaagt ctttgcccat tccttcaaat tgagcaccct gaccgggaaa
      241 aacgtaagct ttcatataaa tttatatttt agtaataatc ttattttcaa tgtaaattaa
      301 aatatattgc tgataataaa ataaataaac agcaaaaaca atgtgatttt tttgcaaacc
      361 gagcgcaaag ataatatttt taatggatac tacataatct gtaatttgca attgcagatt
      421 attatacata ttgtattcat tataagtaat ttaaagttaa actaattgta taaattatcg
      481 atttggaatt agtcatatgt gcattttcag atacagattt tttcttgtaa ttttgcaact
      541 aatcaaataa aaaaaatatg gaacaacttc tgaaatactt tcctgactta acaagtactc
      601 aaaaagctca atttgaggca ctttatgact tgtatttcga atggaactca aaaataaatg
      661 tgatttcacg taaggatatt gaaaacctgt ctgaacatca tgtgcttcat tcactggcta
      721 ttgcagaaat aattcgtttt cagccaggat ctacagtttt agatgtgggt actggtggcg
      781 ggttccccgg aattccactg gctatacttt tcccggaaac taactttgtt ttaattgatt
      841 caatcggtaa aaaaatcaaa gtcggcaatg aagtatcgac agctatcggc ttaagaaaca
      901 taacattaaa acattcccgt gttcaggaag aaaaaggaaa atatgatttt gtagtcagcc
      961 gggcagttat gcctttagga gatttagtaa agttggttca aaagaacgtt agcaagaaac
     1021 acataaacgc ccttccgaac ggccttatct gtctgaaagg tggtgaatta cagcacgaaa
     1081 tgcaacctta taaaaatatt gcggaactat acgatgtaag caactttttc aaggaagagt
     1141 ttttcaaaac aaagaaagca gtatacgtac cactttaaga accaacaaat tagataaata
     1201 gactatatat atgattatta agacattcac attcaatcca tttcaagaga atacttttat
     1261 tttacatgac gagacaaacg aagccgttat cattgacgca ggttgtttta atgatgggga
     1321 aaaacgatta atagaacatt attttgaaga aaataagctc tcacttaaac gacttataaa
     1381 cactcactta catttggatc accaatttgg aaataaattt atttttgata catttggagt
     1441 tgcacctgaa gctggtcagg aagatgaatt tctgttgggt aatgtagcgg cgcaagcacg
     1501 ttcatttgga ttgcctttta atgaagaagc tcaaccactt agtacatata ttactgaaaa
     1561 tcaagaaata aaatttggaa attcttcatt gatagcaatt catgttccgg gtcattctcc
     1621 cggaagtatg gcattttact ctgaaaaaga tggagtatta tttgccggag acgtgctttt
     1681 tcaagggtca attggacgta ccgatttggt aaaaggcgat tacgcaacat tgatttcatc
     1741 aattactaaa aaactactta cactacccga ttccacggta gtttattgcg gtcacggccc
     1801 tactactacg atcgggaatg agaaaagaaa taatccgtat ttataaacta ttgatagaga
     1861 ttgttttcaa taataaattc atacacagaa ggatgcaacc attggcttgc atcctttttt
     1921 cgtccgataa aatcgcgaat aagcgatgat gaaatatcgt aaaatggtgt gtcaagcaat
     1981 tgcatttgag gatatttgtc tgctacctca acaaaatcaa accctcgacg cggataaacc
     2041 aaaacaggaa attcattaag taattgaaga tggtttttcc attgatcaaa aaccagcgca
     2101 ttatcacttc ctatgattaa ttcaaattga taatcaggaa attgagattt caattcatgc
     2161 agagtatcaa tagaataaga tggaataggc atggtgaatt ccacgtctga tgctttgaaa
     2221 tttggattat tacgaatggc caacatcaac atatccaaac gcaaatactc atctaataga
     2281 tctgattggt ttttcagcgg attacaaggc gaaacaacaa accaaacctc atctacatat
     2341 ttgttatcaa caagatattc agccagtttc tgatgtccta aatgaatagg attaaaggaa
     2401 ccggaataaa ctccaattct tttttttgtc tgattaataa gaccttgttc cgatttcatc
     2461 gaatttaaat ctgattattt gtttagaaat tcccgaattg cattttcagc ctcctttttg
     2521 gctgtttcaa gatcgtcatt tacaatcaca agatcaaaat ctggagcaaa cgtcatttca
     2581 aaatcagctt
//
LOCUS       DATDNM010000441         4568 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1872859, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000441 DATDNM010000000
VERSION     DATDNM010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4568
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1872859"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..461
                     /locus_tag="VI413_07495"
     CDS             <1..461
                     /locus_tag="VI413_07495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914503.1"
                     /translation="QPSKPDTGAKSITQPTVAAQPKQDDVPLFKGLFAYRANDPHFVA
                     IYVLNGTVDFEKIKAAFDAYNTKNYSVMNLKVSLEKVDKLQIVIIGSLTDASVAKSYL
                     LRMVKEKTLFEGLKGANYRNLLGSRKNLNTVVQQNALNTYFEFMQEYYLK"
     gene            530..2077
                     /locus_tag="VI413_07500"
     CDS             530..2077
                     /locus_tag="VI413_07500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional response regulator/alkaline
                     phosphatase family protein"
                     /protein_id="HEY6914504.1"
                     /translation="MRKDRILWADDEMDLLRPYILFLEEKGYEVVTATNGKDAVELCQ
                     KETFDIIFLDENMPGLSGLETLALIKDIDPNVPMVMITKSEEENIMNMAIGSKIADYL
                     TKPVNPSQILLTLKKNIHKKEIVTEHTTSSYQSQFGRIGMQINDSLTYEDWVEVYKKL
                     VYWELELAEADNGMDEMLQMQKTEANNTFTKFIRKNYVDWFEHPDKRPLMSPDLFKTK
                     VFPLLDKGEKVFFVLVDNFRYDQWKVIRELMNEFYQFNEEGLYCSMLPTATQYARNSI
                     FSGLLPLQIQQMFPDLWVEEEDEEGKNLNEKDLLQTMFQRYRKNYTFSYHKINDSNSC
                     ERLIDQLPRIDNNQLNVCVLNFIDMLSHARTESKMMRELANDAEAYRSLTLSWFRHSP
                     TYELFKAIAQRGYKVIFTTDHGTIQVNNAIKVIGDRNTNVNLRYKVGKNLSYNKKEVF
                     EITQPSKVGLPSPNVSSAYIFAYNENFFAYPNNYNHYVSYYKNTFQHGGISLEEMLIP
                     LIVMQPK"
     gene            2082..3038
                     /locus_tag="VI413_07505"
     CDS             2082..3038
                     /locus_tag="VI413_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine carbamoyltransferase"
                     /protein_id="HEY6914505.1"
                     /translation="MKTYTNVKDLGNLQEAIKEALEIKKNRYAYKHIGENKTLLMVFF
                     NSSLRTRLSTQKAGMNLGMNTMVLDINSGAWKLETERGVIMDGDKPEHILEAIPVMAS
                     YCDVIGVRAFAGLEDKKFDYEETIINQFIKYSGKPVFSMEGATSHPLQAFADLITIEE
                     YKKTARPKVVLTWAPHPKALPQAVPNSFADFMNEADVDFVITHPKGYELAPEFVREAQ
                     VEYDQMKAFEGADFIYAKNWSAYTDPNYGQILSKDMDWTVSSRQMAVTNNAHFMHCLP
                     VRRNMIVTDDVIESPQSIVIPEAANREISAQVVIKRLLENIK"
     gene            3041..3565
                     /locus_tag="VI413_07510"
     CDS             3041..3565
                     /locus_tag="VI413_07510"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEY6914506.1"
                     /translation="MNLEQVAASIRNVPDFPKPGILFKDITTAMKDPEVLKFIADELY
                     EYYKDKGITKVVGVESRGFVLGSILAYKLGAGFVLLRKPGKLPAETYKVNYDLEYGTD
                     SLEIHKDSIEENDVVLLHDDLLATGGSASAALKLLTKFSHSSVYVSFLIELTFLNGRP
                     RLTGAKDIHSLIQF"
     gene            3672..4442
                     /gene="argB"
                     /locus_tag="VI413_07515"
     CDS             3672..4442
                     /gene="argB"
                     /locus_tag="VI413_07515"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEY6914507.1"
                     /translation="MEKLTLIKVGGKIVEEPASLKQLLSDFSQIEGYKVLVHGGGRSA
                     TAIASKLGIESHMVNGRRITDEETLKVVTMVYGGLVNKQIVAGLQAIGVNALGLTGAD
                     LNYMRSEKRPVKDVDYGFVGDVKEVNADILSDLIAKGVVPVLAPLTHDKAGNLLNTNA
                     DTIAGEAAKALAKHFEVTLMYCFEKKGVLLDENDDDSIISNLSPGLFEKYVADGVING
                     GMIPKLENSFEALNAGVKQVVITRADLIHTDGGTKILL"
BASE COUNT         1465 a          773 c         1010 g         1320 t
ORIGIN      
        1 cgcaaccatc gaaaccggat acgggtgcaa agtcgataac tcaaccaaca gttgcggctc
       61 aaccaaagca ggatgatgtg ccattgttta aagggctttt tgcttacagg gctaatgacc
      121 cgcattttgt tgctatttat gtgctgaatg gaaccgttga ttttgaaaaa ataaaagcgg
      181 cttttgatgc gtacaatacg aagaattata gcgttatgaa tctgaaagtg tctctggaaa
      241 aagtggacaa attgcagatt gttattattg gaagcctgac tgatgcttcg gtggcaaagt
      301 cttatttgct ccggatggta aaggaaaaaa cgttatttga aggcttaaaa ggagctaact
      361 atcgaaattt gcttggttcg agaaagaact tgaatacggt ggttcagcaa aatgcactga
      421 atacttattt tgagtttatg caggaatatt atttaaaata ggttgactga gttaatctgt
      481 ttatttagtt gattaaaata acaaattaca aaaattaaac gtaacaatta tgagaaaaga
      541 ccgcatactt tgggctgatg acgaaatgga tttgttgcgt ccttacatcc tgtttctgga
      601 agaaaaagga tatgaagttg ttacagccac caacggaaaa gatgctgtag aactttgcca
      661 gaaagaaact tttgacatta tttttctgga cgagaatatg cctggtttaa gcggactgga
      721 aacgttggca ttgatcaaag atattgatcc gaatgtgcct atggtgatga ttactaaaag
      781 tgaggaagag aatataatga acatggctat tggcagcaaa attgctgact acctgaccaa
      841 accagttaat cccagccaaa tattgctgac cctcaaaaaa aatattcaca aaaaagaaat
      901 tgttactgaa catacaactt catcgtacca gtcgcaattt ggtcggattg ggatgcaaat
      961 caacgattcg ttaacttacg aagattgggt tgaagtgtat aagaagttgg tttattggga
     1021 actggagttg gccgaagctg ataatggcat ggacgaaatg cttcagatgc agaaaacgga
     1081 agctaataat acgttcacca aattcattcg gaaaaactat gtggattggt ttgaacatcc
     1141 cgataaacgt ccgttgatga gtcccgattt gttcaaaact aaagtgtttc cattgctcga
     1201 caagggtgag aaagtattct ttgtgttggt agataatttc cgctacgacc aatggaaggt
     1261 gattcgggaa ttgatgaatg aattttatca gttcaatgaa gaaggattgt attgcagcat
     1321 gcttccgact gctacgcaat atgcacggaa ttcaattttt tctggtctgt tgccactaca
     1381 aattcagcag atgttccctg atttgtgggt cgaagaggaa gatgaagaag gcaaaaacct
     1441 taacgaaaag gatttgttgc aaactatgtt ccaacgttat cgcaaaaatt atacattctc
     1501 ttaccataaa attaatgatt ctaattcgtg cgagcgcttg attgatcaac tgccccgaat
     1561 tgataataat cagttaaatg tttgtgtgct gaattttatt gatatgcttt cgcatgctcg
     1621 gacggaatcg aaaatgatgc gcgaactagc caatgatgcc gaagcgtatc gttcgctgac
     1681 cttgtcatgg ttcaggcact cgccaaccta cgaacttttt aaagctattg cccagcgggg
     1741 ttataaagtt attttcacaa ctgaccatgg aaccatacag gttaataatg ctataaaagt
     1801 tattggcgac agaaatacaa atgtaaatct tcgttacaaa gtaggtaaaa atctgagtta
     1861 taataaaaaa gaggtttttg aaataaccca accgtctaaa gtggggcttc ccagtcccaa
     1921 tgtgagttcg gcttatattt ttgcttataa cgagaatttt ttcgcttatc ctaataacta
     1981 taatcactat gtgagctatt ataaaaacac attccaacat ggtggaattt cattggaaga
     2041 aatgttgatc ccactaattg taatgcaacc gaaataaaaa tatgaagact tatactaacg
     2101 ttaaagacct cggcaacttg caggaagcaa taaaagaggc attggaaatc aagaaaaacc
     2161 gttatgctta caagcatatt ggtgaaaata aaacactgtt gatggtgttt tttaattcca
     2221 gtttgcgtac tcgtttgagc actcaaaaag cgggaatgaa cctgggcatg aacactatgg
     2281 tgctcgatat taattcaggt gcctggaaac tggaaacgga acgtggagtg ataatggatg
     2341 gcgataagcc ggaacatatc ctcgaagcaa ttccggttat ggccagctat tgcgatgtga
     2401 ttggcgttcg tgcttttgct ggcctggaag ataaaaaatt cgactacgaa gaaacgatta
     2461 ttaatcagtt tatcaaatat tcgggcaagc cggtatttag tatggaaggt gcgacatcgc
     2521 atccattgca ggctttcgcc gacttaatta ctattgaaga atacaaaaaa acagctcgcc
     2581 cgaaagtagt tttgacatgg gcaccgcacc caaaagcatt gcctcaggct gtgccaaatt
     2641 cttttgctga ctttatgaat gaagctgacg ttgattttgt gattactcat ccgaaaggat
     2701 atgaattagc acctgagttt gttcgtgagg cgcaggtaga atacgaccaa atgaaagcat
     2761 ttgaaggagc agattttatt tatgccaaaa actggtcggc gtatactgat cctaactacg
     2821 gccaaatcct gagcaaagat atggactgga cagtgagtag ccgacaaatg gctgtgacta
     2881 acaatgctca ttttatgcat tgcttgcctg tgcgccgtaa tatgattgtg acagacgatg
     2941 taatagaaag cccacaatct attgtaatac ctgaagcagc caaccgggaa atttcggcac
     3001 aggtagtgat taaacgatta ttagaaaata taaaatagaa atgaatttag aacaagttgc
     3061 agcttccatt aggaacgtgc ccgattttcc caaaccggga attttattca aagatattac
     3121 tacagcaatg aaagatcctg aagtgctgaa gtttattgcc gatgagcttt acgaatatta
     3181 taaagataaa ggaatcacta aagtagttgg tgtcgaaagt cgcggattcg tgcttggaag
     3241 tattctggcg tataaactgg gagccggatt tgtgttgctt cgtaagcccg gaaagcttcc
     3301 ggcagaaacc tataaagtta attacgatct ggaatacgga actgattcgc tggaaataca
     3361 caaagattcc attgaggaaa atgatgttgt tttacttcat gatgatttgc tggccaccgg
     3421 ggggagtgca agtgctgcat tgaagttgtt gacaaaattt tctcacagtt cggtatatgt
     3481 tagcttttta attgagttga catttttgaa cggtcgtccc cgactgactg gtgctaaaga
     3541 tatacattcg ttaattcaat tttaaataac cactaagcca cttagttcac taagttacaa
     3601 gtagaaactt tttctaatgt aattatatgc ttagtgtttt ttttgtgtcc ttagtgcctc
     3661 tgtagtcaat aatggaaaaa cttactctta ttaaagttgg cggtaaaata gtagaagagc
     3721 cagcaagcct aaagcaatta ttatcagact tttcgcaaat agaaggttat aaagtacttg
     3781 tgcacggtgg cggtcgctcc gcaacagcca ttgcatctaa acttggcatt gaaagccata
     3841 tggtaaacgg acgacgcata actgacgaag aaaccctgaa agtggtaacg atggtttatg
     3901 gcggtttggt gaacaagcaa attgttgccg gattgcaggc tattggtgta aatgcgctgg
     3961 gtctgacagg agctgatcta aattatatgc gctcggaaaa acgtccggta aaagatgttg
     4021 attatggttt tgtgggcgac gtaaaggagg tgaatgccga cattttatct gatttaattg
     4081 ccaaaggtgt cgttcctgtt ctagctccgc tgactcatga taaagcagga aacctgctaa
     4141 atacaaatgc agatactatt gccggagagg ctgctaaagc attggcaaaa cattttgaag
     4201 taacacttat gtattgcttt gaaaaaaaag gagtgctttt ggacgaaaat gatgatgata
     4261 gtattatttc aaatctttct cccgggcttt ttgaaaaata tgtggcagat ggagttatca
     4321 atggaggcat gattcccaaa cttgagaatt catttgaggc tttgaatgca ggagttaagc
     4381 aagttgtaat tactcgcgct gatttaattc ataccgatgg aggaaccaaa attttgttat
     4441 aaaaaatcgt aattcgaaat gaaaagaaca gtttttgtcc tgtgtgcatc attcatgatt
     4501 ttaagtgcct tgtgcgctca gcaggaaatt aaactttatc caaacggacc aaaagaaagt
     4561 aaccagat
//
LOCUS       DATDNM010000442         4158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_484504, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000442 DATDNM010000000
VERSION     DATDNM010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4158
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484504"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..947)
                     /locus_tag="VI413_07520"
     CDS             complement(<1..947)
                     /locus_tag="VI413_07520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEY6914508.1"
                     /translation="MANEIVETPMMKQFNEIKAKHPDAILLFRCGDFYETFSSDAIRA
                     SQVLGITLTKRANGAGKTIELAGFPHHALDTYLPKLVRAGMRVAICDQLEDPKLTKKI
                     VKRGVTELVTPGVSYSDTTLNHKENTFLASVYLNKNQVGVSFLDISTGEFLVAEGTTE
                     YVDKLLNSFGPKEVLFDRSKRKDFESNFGTKFFTYALEDWAYTPDSANERLLKHFETK
                     NLKGFGVDNLPNGVVAAGAIMHYLDQTHHQQTGHITQLSRIEEERFVWLDRFTVRNLE
                     LYGSINEGARTLLDVIDKTISPMGARMLKRWVAFPLKDV"
     gene            complement(1064..2197)
                     /locus_tag="VI413_07525"
     CDS             complement(1064..2197)
                     /locus_tag="VI413_07525"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6914509.1"
                     /translation="MKIIIVGTAFPYRGGLATYNERLAREYVKQGNDVEVITFTLQYP
                     GFLFPGKTQYSSESSPTDLKISRRINATNPLNWISVGKEIRKKSPDMVVFCYWMAFVA
                     PCFGTIARYARAPKTKMVAVIHNMIPHEPTILDRLFPRYFVKAMDGFVAMAESVVADI
                     NKFDKDNKPKVVSPHPIYDHYGALLTKKEAAIKLGLHEHKPYILFFGFIRHYKGLDLL
                     LEAFADKRLREFPVRLIVAGEFYENPQPYLESIIQLKLEGLVELRTGFIPDNEVRNYF
                     SVADIIAQPYRSATQSGVSQIAYHFEKPMLVTKVGGLAEIIPDGKVGYVVDVEPLQIA
                     NALYDFFSKQRGEKMIENIKLEKLKFAWSGMTEAINGLFEQTK"
     gene            complement(2480..3082)
                     /locus_tag="VI413_07530"
     CDS             complement(2480..3082)
                     /locus_tag="VI413_07530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005838876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HEY6914510.1"
                     /translation="MKGSLIILFFFATGLLLGVFRWFPPQVLNYKFDFYVLCALMFSV
                     GLSIGNDPNSFRQFRRLNVRLIFLPLMTILGTFLGAIVVSFFIRNHTLTECLAVSSGF
                     GYYSLSSILITQCNGIELGTIALLSNIIREVITLLFAPWLVRYFGNLAPISAGGATTM
                     DTTFPIIVRTSGKEYSVVSIYHGFVMDLSVPFLVTLFCSL"
     gene            complement(3079..3354)
                     /locus_tag="VI413_07535"
     CDS             complement(3079..3354)
                     /locus_tag="VI413_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015661 - L-lysine efflux transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903401 - L-lysine transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysO family transporter"
                     /protein_id="HEY6914511.1"
                     /translation="MFVILSCMIAGIAVGYLLRRWKIRFIHGLILTLIWLLLFLLGLE
                     VGANETVVRQFGKLGFEAFLLATGGTLGSVIAAWLLWLSVRNKMESK"
     gene            3565..>4158
                     /locus_tag="VI413_07540"
     CDS             3565..>4158
                     /locus_tag="VI413_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011966935.1"
                     /note="catalyzes the interconversion of 2-phosphoglycerate
                     and 3-phosphoglycerate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEY6914512.1"
                     /translation="MSKKALLMILDGWGIGNHTLADVIYSTPTPYWDSLIANYPNSQL
                     LASGEDVGLPEGQMGNSEVGHLNIGAGRVVYQDLVKINIACRDNSIMQNPEIISAYSY
                     ARDNKMKIHFLGLVSDGGVHSSLDHLLKLVDIAKEYNTEAFVHCFMDGRDTDPRSGKG
                     FIEQLDSYTKDSTTKIGSIIGRYYAMDRDKRWDRVKKS"
BASE COUNT         1346 a          914 c          779 g         1119 t
ORIGIN      
        1 ttcacatctt taagtggaaa agccacccaa cgcttgagca tgcgggctcc catggggcta
       61 atggttttat caatcacatc cagcaacgtg cgggcgcctt cattgataga accgtaaagc
      121 tctaaatttc tcaccgtgaa acggtcgagc cacacgaaac gctcctcctc aatacgcgaa
      181 agctgcgtaa tatgccctgt ttgctggtgg tgcgtctgat ccagataatg catgatagct
      241 ccagcagcaa ccacaccatt aggcaaatta tctaccccaa aacctttcag attctttgtc
      301 tcaaaatgtt tcagcaatcg ctcgttggcc gaatcagggg tgtaagccca gtcttcaagc
      361 gcataagtga aaaatttcgt gccgaaattc gattcaaaat ccttgcgctt tgagcggtcg
      421 aaaagcactt ctttcgggcc aaagctattc agcagtttat ccacatattc tgttgtccct
      481 tccgccacaa gaaactcacc ggtagaaata tcgaggaagg aaacgccaac ctgattctta
      541 ttgagataaa cactggctaa aaatgtattt tccttgtgat tcagcgtagt atcactatac
      601 gaaacacccg gagtaaccaa ttcagtcaca ccgcgcttta ctattttctt agttagtttc
      661 gggtcttcga gttgatcgca aatagcaacc cgcattcccg cgcgaaccaa ctttggcaaa
      721 taagtatcca acgcatgatg tggaaatcca gccaactcaa tggtttttcc ggctccattg
      781 gcacgcttgg taagtgtgat tcccaagacc tgggaagccc gaattgcatc ggaagaaaaa
      841 gtctcgtaga aatcgccgca acggaaaagc aaaattgcat caggatgctt tgccttaatc
      901 tcgttgaatt gcttcatcat cggggtttct acaatttcgt ttgccatctt atagtaaaat
      961 taaagaatgt tattgagaat atgaatattg taagtaaaca atggtagttt tgagaatctc
     1021 aaaactacca ttgtttagaa tgcaaagcct atgcttcgac attttatttg gtttgttcaa
     1081 aaagaccatt tatcgcctca gtcatacccg accaggcaaa tttcagtttt tcgagtttga
     1141 tattttcaat cattttttct ccacgttgct ttgagaagaa atcataaagt gcatttgcaa
     1201 tttgcagagg ctccacatcc accacataac ccacttttcc atccggaata atttcggcca
     1261 agcctcccac tttcgtcacc aacattggtt tttcaaaatg gtaagcaatc tggctcacac
     1321 cactctgggt agcagaacgg taaggctgtg caatgatatc agccacacta aaataattgc
     1381 gaacctcatt atccggaata aatccggtac gtaactccac caatccttcg agttttagct
     1441 gaataattga ttcaagatac ggttgtggat tttcgtaaaa ttcaccggca acaatcaatc
     1501 tcaccggaaa ttcacgcaaa cgcttatcgg caaatgcttc gagcagcaaa tccagtcctt
     1561 tgtaatgacg tataaaaccg aaaaatagaa tatagggttt atgttcgtga aggccgagtt
     1621 ttatcgctgc ttcttttttt gtcaataaag ctccgtaatg atcataaata gggtgtggcg
     1681 atacaacttt gggcttatta tccttatcaa acttatttat gtcagccaca actgactctg
     1741 ccatggctac aaaaccatcc attgctttca caaaataacg agggaaaagc cggtcaagaa
     1801 tggtaggctc atgaggaatc atattatgaa ttacagctac cattttggtt ttcggagcac
     1861 gcgcataacg ggcaatagtt ccgaaacaag gcgccacaaa agccatccag taacaaaaaa
     1921 caaccatatc aggcgacttc ttccgaattt ccttacccac cgaaatccag tttagaggat
     1981 ttgtggcgtt aatcctgcgc gaaatcttca aatcagtcgg agaagattca gacgagtatt
     2041 gcgttttccc gggaaataag aaccccggat attgcaacgt gaaagttatg acctcaacat
     2101 cattcccctg cttcacatat tcacgtgcca aacgttcatt gtatgtagcc aatcctccac
     2161 gatatggaaa tgcagtccca actatgatta ttttcatacg attaacaatt agtttttaag
     2221 gtcgtatgga actcatcccg cttaaacggg actcgtttca tgtgcatgaa tttagaaatt
     2281 aaaccccgga gtttcaacaa aagaaaatga atttcagacg ttatgcctaa aacccttttt
     2341 caactgaatt gttcaaaacc attaatcaat tcagattcat tgaaatcgct gattctttct
     2401 gcaaaagtac aaaataattt agtgcatagt ttaatttata gtgttttttt acaccctcaa
     2461 tgtaaatgag aattcgtttt tacaaactgc aaaacaaagt aaccaaaaac ggcaccgata
     2521 aatccattac aaaaccgtga taaattgaaa ctacagaata ttccttgcct gaagtgcgga
     2581 caataatagg aaaagtggta tccatagtgg ttgccccgcc ggctgaaatt ggcgccagat
     2641 tgccgaaata tctgaccaac catggagcaa aaagaagtgt gataacttcg cgtattatat
     2701 tggagagcaa ggcaatagta ccgagttcaa taccgttaca ttgtgttatc aaaatgcttg
     2761 acaaagaata atatccaaaa ccggaactaa cggcaagaca ttcggtaaga gtatgattcc
     2821 ggataaaaaa actgacaaca attgcaccca gaaaagtacc taaaatggtc attaacggca
     2881 gaaaaatgag tcgcacattc aacctgcgaa attggcggaa tgaattcgga tcatttccaa
     2941 tgctgagtcc cactgaaaac atgagcgcac aaagcacgta gaaatcaaat ttatagttca
     3001 aaacctgtgg gggaaaccaa cggaaaacgc ccaacaataa tcctgttgca aaaaaaaaca
     3061 atataatcag acttcctttc atttgctctc cattttattg cgtacactca accaaagcaa
     3121 ccaggctgca ataacacttc ccaacgtgcc gccggtagcc aataaaaaag cttcaaaccc
     3181 cagtttgcca aattgacgta caaccgtttc attggcacca acttccaacc ccaacaaaaa
     3241 caatagcagc cagataagcg ttagaattaa tccgtgaata aaccggattt tccagcgtcg
     3301 taaaagatag ccaacagcta ttccggcaat catgcaagag agaataacaa acatttattt
     3361 ttagtgtgaa aatgaaaaaa tatacattta atgacgcaca aagataatct ttagatttca
     3421 aaaaaacatg atttgttgaa tttcacagga tttgctgatt tattggtaat aacagattga
     3481 aaatgtgcaa aaaaataagt aattttgcac cccgaaaaca aaaggtgtta gttatcgtat
     3541 aaaaattata aaattcaaaa tattatgagc aaaaaagcat tattaatgat tctagatggt
     3601 tggggaatcg gaaaccacac cctggccgat gtaatttaca gcactccaac gccttattgg
     3661 gattcgttga ttgcaaacta tccaaactca caacttttag cttcgggcga agatgttggt
     3721 cttcccgaag gtcaaatggg taactccgaa gtgggtcacc tgaatatcgg agccggacgc
     3781 gttgtttatc aggatctggt aaaaatcaac attgcctgcc gcgacaacag cattatgcaa
     3841 aacccggaaa ttatcagtgc atactcttat gcccgcgaca acaaaatgaa aatccatttc
     3901 ttaggattgg tgtctgatgg tggcgttcac agctctttgg atcacttatt gaaactggtc
     3961 gacattgcca aagaatacaa cacggaagct tttgttcact gctttatgga tggtcgtgat
     4021 actgacccac gcagcggaaa aggctttatc gaacaattag actcttacac caaagattct
     4081 accacgaaga ttggctctat cattggccgt tactatgcca tggatcgtga caaacgctgg
     4141 gatcgtgtaa aaaaatcg
//
LOCUS       DATDNM010000443         3672 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_484565, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000443 DATDNM010000000
VERSION     DATDNM010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3672
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484565"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..307)
                     /locus_tag="VI413_07545"
     CDS             complement(<1..307)
                     /locus_tag="VI413_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein subunit"
                     /protein_id="HEY6914513.1"
                     /translation="MKKFKFTIEGTSYSVNVKSVEGNQAEIEVNGKNYTVGLEEEVNP
                     LKTPILVRKEVVTKPGENKIATKAAPMPPSNKPSAGGIKAPLPGSIIRVVVKVGDTVK
                     "
     gene            complement(314..448)
                     /locus_tag="VI413_07550"
                     /pseudo
     CDS             complement(314..448)
                     /locus_tag="VI413_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018965430.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
     gene            complement(580..2139)
                     /locus_tag="VI413_07555"
     CDS             complement(580..2139)
                     /locus_tag="VI413_07555"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009128927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEY6914514.1"
                     /translation="MENQQKVKNLIDLRAQAKLGGGVKRIASQHAKGKFTARERLEML
                     LDEGSFEELDMFVTHRCNNFGLENEKYLGDGVITGHGTIDGRTVYVFAQDFTVFGGSL
                     SETMALKICKVMDMAMKMGCPMIGINDSGGARIQEGVTSLAGYAEIFQRNIMASGVIP
                     QISAIFGPCAGGAVYSPALTDFVVMTKENSYMFVTGPKVVKSVTGEDISTEDLGGADV
                     HARKSGVSHFKAEDEEEGMLLIRKLLSYLPQNNLEEPPLFENNDPIIRLDDKLNSIVP
                     DNPNMPYDMKDVIHAIVDNDEFLEIHRHYARNIIVGFARFNGAPTGIVANQPNFLAGV
                     LDCDASRKAARFVRFCDAFNIPVLTLVDVPGFLPGSGQEYAGIITHGAKLMFAYGEAT
                     VPKVTVTIRKSYGGAHDVMSCKQLRGDFNYAWPTAEIAVMGAAGAIEVLEGRAISAIK
                     DPEEKAAFVSEKVNEYKEKFANPYQAAAYGYIDDIIEPRNTRFRVIRAFQALETKKVV
                     NPPRKHCNIPL"
     gene            complement(2223..2633)
                     /gene="mce"
                     /locus_tag="VI413_07560"
     CDS             complement(2223..2633)
                     /gene="mce"
                     /locus_tag="VI413_07560"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HEY6914515.1"
                     /translation="MKPTHIEHLGIAVKSLETAIPYYENVLGLTCYAVEEVPEQKVKT
                     AFFKVGQTKIELLESTDPEGPVGKFIEKKGEGVHHIAFAVEGLQAKLDLAAERGIALI
                     DKTPRKGAEGLNIAFLHPKSTFGVLTELCEDPNK"
     gene            complement(3274..>3672)
                     /locus_tag="VI413_07565"
     CDS             complement(3274..>3672)
                     /locus_tag="VI413_07565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914516.1"
                     /translation="QIILPAGKAKFNWIDIENIGEAGAILLDRFSDYKNLAIELTGYE
                     NSDFYKVANLINTETERPILFLNVNPFEFYRIKRKEGMVKGMIMVMIMLHFLPRFQKE
                     PVISAYYEKLTGKKPTSLIEFIEREKLKFQ"
BASE COUNT         1087 a          747 c          648 g         1190 t
ORIGIN      
        1 ctttcactgt gtcgccaact ttaactacca cgcggataat gcttcccggc agcggagctt
       61 tgattcctcc ggcgcttggt ttgttcgatg gtggcattgg agctgctttc gtagcaattt
      121 tattttctcc cggtttggtt accacttctt tacgaaccaa aataggagtt ttcagcgggt
      181 tcacttcttc ttcaagtcct acggtatagt ttttaccgtt tacttcaatt tcagcctggt
      241 taccttctac cgatttgaca ttcacactat atgaagtgcc ctctattgta aatttgaatt
      301 tcttcatata atcttatcta ttattaatta caccgtaaat tttagaactc cagggtgaat
      361 aacgtctttc aatacgtttg atagtaatta cgttactttc agtatcgtga acctcatcat
      421 aatacatgtg taaagccata gcaattgcta ctatatcgcc cgaagggact tcgcctttca
      481 tacctaaaag ttcggtgacc tttgtagctt tagcactttg tgcctttatc tttttgtaag
      541 aaatgagtct aaagattttt ttcagttcca tattcttaat tataaaggta tattacaatg
      601 tttacgtggt ggatttacca ctttctttgt ttccaaagcc tggaaagcac gaataacacg
      661 gaaacgtgta ttgcgtggtt caataatatc atcgatatag ccataagcag cagcctggta
      721 aggattagcg aatttctctt tgtattcgtt cactttttcg cttacaaatg cagctttttc
      781 ttcaggatct ttaatcgcag aaatagcgcg tccttccaat acctcaatag cacctgcagc
      841 acccattaca gcaatctcag cagttggcca tgcgtagttg aaatcaccac gaagttgttt
      901 acagctcatt acgtcgtgcg caccaccgta cgatttacgg atagttaccg ttactttcgg
      961 aacagtagct tcaccataag caaacatcag tttggcacca tgggtaataa tacctgcata
     1021 ttcttgtcct gaaccaggca agaaacccgg aacatcaacc aatgtcaaca ccggaatgtt
     1081 gaatgcatcg cagaaacgaa cgaaacgggc agctttacgt gaagcatcgc agtcgagtac
     1141 acctgcaagg aagttaggct gattagccac aattccggta ggagcaccgt tgaaacgggc
     1201 aaaaccaaca atgatattac gcgcgtagtg acggtgaatt tcaaggaatt catcattgtc
     1261 aacaatggca tgaataacat ctttcatgtc ataaggcatg ttcggattat caggaacaat
     1321 agagtttaat ttatcatcca aacggataat cgggtcattg ttttcgaaca atggtggttc
     1381 ttccaggttg ttttgtggca aataagaaag caatttgcgg ataagcaaca taccttcttc
     1441 ttcgtcttcg gctttgaagt gagaaacacc cgatttgcgg gcgtgaacat cagcacctcc
     1501 aaggtcttcg gttgaaatat cttcacctgt taccgatttt acaactttag gtccggttac
     1561 gaacatatag ctgttttctt tggtcatgac cacaaagtcg gtgagggcag gagagtacac
     1621 agcaccaccg gcgcaaggac cgaagatagc cgaaatctgt ggaataacgc cagaagccat
     1681 gatattacgt tggaaaattt cggcataacc ggccaacgaa gtaacacctt cctgaatacg
     1741 ggcaccaccc gaatcattaa taccaatcat tggacagccc attttcatag ccatatccat
     1801 tactttacag attttcaaag ccattgtttc tgacaatgaa cctccaaaaa cggtgaagtc
     1861 ctgtgcaaat acatacactg tgcgaccatc gatagtaccg tggccggtaa ttacaccgtc
     1921 acccaggtat ttttcatttt ccagaccgaa attgttgcaa cgatgcgtta caaacatatc
     1981 cagttcttca aaactaccct catctaacaa catttcgagg cgctcacgtg cggtgaactt
     2041 acctttggca tgttgcgatg caattctctt gacaccacct cccaatttgg cttgtgcgcg
     2101 caaatcgata aggtttttta ccttttgttg attttccatt ttaatatatc tgaagttttg
     2161 gctgttgttt attgatacaa aatcacgtgt aagtaccaat caaccaaaca ctgttttttc
     2221 aattatttgt ttggatcttc gcaaagctct gtcaacactc caaaagttga ttttggatga
     2281 aggaatgcaa tattcaatcc ttcggctcct ttacgtggag ttttgtcaat cagtgcaata
     2341 ccgcgttcag cagccaaatc aagtttagcc tgtaatcctt ccactgcaaa tgcaatgtgg
     2401 tgaacgcctt cgcctttctt ttcaataaat tttcctacag gtccttcagg atcggtcgat
     2461 tccaacaatt caattttggt ttggcctact ttgaagaaag ctgtttttac tttttgttca
     2521 ggaacttctt ccactgcgta gcaagttaat cctaatacat tttcgtagta agggatagca
     2581 gtttcaaggc tttttactgc aatgcctaaa tgctcaatat gagtcggttt cataaaataa
     2641 aatattatag tgtaataaat tgtattttaa ataaaaaaca ggacaaaaaa cagccggaat
     2701 tttagatctt aataaacgta aatacagaaa tttttccgta tttctaattt gccacaaaat
     2761 tagtacaatt attcttcatt atcaacgaaa tagataataa ttttttatat tttttcttgt
     2821 tgttgattat cagaaagata ggattaatat acaaaaaact tgcacaaaat gaccaaaagt
     2881 atgcaacttt cgggtgcaga ttccggtttt tgtgattttt gtttcagttt taaattttta
     2941 tgctaaaaat aaggataaat gtgcataaaa aatgggttgg ttttgtattt ttataacgtg
     3001 tgcaataatt gtgtttttgc tgatattgaa aatcaataaa ttccagagga ggaatatcta
     3061 tctatttaaa aacgaaaacg aaaaaatatc agggaataca tcttaaatta tcctcagaaa
     3121 gaacttaaaa cattacaacg catacaaatt ataaaaatga gatgaaaaaa cgcaactatc
     3181 ttattgatga taactgcgta atttctttta aatgtctatg atttgtctgt ctgtaaatag
     3241 cgcaactatt aaaaactggt agatttctct atttcattga aatttcagtt tctctctttc
     3301 aataaattca ataaggcttg taggtttttt tccggtcagt ttttcgtaat acgctgagat
     3361 aaccggttct ttctgaaatc gtggcaggaa atgcaacatt atcattacca taatcatccc
     3421 tttcaccatt ccttcttttc tcttgattct gtaaaactca aaagggttta cattcaagaa
     3481 cagaatgggc cgttcagtct ccgtatttat taagtttgcc accttataaa agtcgctgtt
     3541 ttcgtatccg gttagttcaa ttgccagatt tttataatcc gaaaagcgat cgagcaaaat
     3601 agcgccagcc tcacctatat tttcaatatc aatccaatta aatttcgctt tccctgctgg
     3661 taagataatt tg
//
LOCUS       DATDNM010000444         2212 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1659995, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000444 DATDNM010000000
VERSION     DATDNM010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1659995"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..449
                     /locus_tag="VI413_07570"
     CDS             <1..449
                     /locus_tag="VI413_07570"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEY6914517.1"
                     /translation="NIADRLMAEVHYYTPFQFCLLEKDANWGKMFYYWGKDNHSATDQ
                     SRNATWGEENELDQKFESMKTKFVDKGIPVIIGEFGAFKRKLSLTSDQALHNASVEHY
                     YRYLVKSAINKGLIPICWDVPGWLYNRNTGAIVDRGIINAIMQGAK"
     gene            1069..1452
                     /locus_tag="VI413_07575"
     CDS             1069..1452
                     /locus_tag="VI413_07575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914518.1"
                     /translation="MIVLKYLYYRVYKALEAKTEGAAYGAFIYIITLLLILVGTIVAI
                     FENSNILSFCYLEYIFIFVHPLVLQLFGFVVIFLYCYFVFASKRINYFESLFISCKWL
                     NTHIKLWMIIGLPLFLFIIGIFLTT"
     gene            1588..>2212
                     /locus_tag="VI413_07580"
     CDS             1588..>2212
                     /locus_tag="VI413_07580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914519.1"
                     /translation="MKKYILIFALHLCVADFAAVRVNAPIDNYLNQAIWSQVLNNFEV
                     NTPIAVVTPWMFFYANISSIDNDVFFKNNLEEEKIFSTKNVILKELYSTVNNNFFKMK
                     PVDSTMIVRALYKDRLLYTLSLNHLDTTSTIDYLLPDNETGETVVFEHHGNLVSNRRF
                     SPNNTIVTNNEWQADSLCISTVNNETKSYYTVEESRYKNGDVWRKSIF"
BASE COUNT          711 a          329 c          408 g          764 t
ORIGIN      
        1 ataacattgc cgaccgtttg atggcggaag tacattatta tacaccgttt caattttgtt
       61 tgcttgagaa agatgccaat tggggcaaaa tgttctacta ttggggaaag gataatcatt
      121 cggcaactga ccagtcccgt aatgccactt ggggcgaaga gaacgaactg gaccaaaagt
      181 ttgaaagcat gaaaaccaaa tttgtggaca aaggaatccc ggtgattatt ggagaatttg
      241 gtgcttttaa gcgtaaactt tcattgacat cagatcaggc tcttcacaat gcgtcggttg
      301 agcattatta cagatatctt gtaaaatctg cgattaacaa gggattaatt ccaatttgct
      361 gggatgtacc cggatggttg tataaccgga atactggtgc gatagttgat cggggtatta
      421 taaacgctat catgcaggga gctaaatgaa ataatatggc gtcaaccaca agtattccct
      481 tacaactact aatgtgaaac cagtacttac tgtaattggg aggcaatttt tttaatctat
      541 tagttgtgtt tattgtcacc ctgtttttcc ggctcacaga gaaattatgc tgactatttc
      601 tgacttgaaa aaattcgact gctaatttac cagccctggt aaattagcag tcgaataaac
      661 tacagtctat tctgttatta aatctgcccg attgtaaacc ctcctataat ccagagtaaa
      721 cgctctaaaa agatataact atatcaagat aagaataaaa gatttcgatt gttttgtcag
      781 catggataaa aaaattcaat cgttggaaat ggttttgtca tgagtttttt caggcaacca
      841 tttgagatgg aaaagataat aatacaattg aaacccctat tgagtacgcc gctaccctta
      901 ttgtgtattt tatattcata attttgttgt ctcatcaatt tgtataggca gatctataat
      961 acacagaaaa acatcaaaaa ccagttaaga tgtttttcac aagaaataat gactccaatt
     1021 ttaagtgaga agtagcatgg attggttgat aattaaatta ttttcgatat gatagtttta
     1081 aaatatttat attatcgggt ttataaagca cttgaagcaa aaacggaagg agctgcttat
     1141 ggagcattta tttatataat cactttactt cttattcttg tcggaactat agtggctata
     1201 tttgagaata gcaatattct ttctttttgt tatttagaat acatatttat ttttgttcat
     1261 ccattggtat tgcaattatt cggctttgtg gttattttcc tttattgtta ttttgttttt
     1321 gcaagtaaac gaattaatta ttttgaaagc ttgtttattt cctgcaaatg gctaaatacg
     1381 catattaaat tgtggatgat aattggatta cctctctttt tgtttattat tggaattttc
     1441 cttaccacct aatattccct gaattgtttt ttttattgaa gttttatggg tattgtcacg
     1501 agtataaaga ggaagatggc tcgttttctg agaatttttg tgttaattgc cattagtaga
     1561 taagggtcgt aacgaattaa atctaaaatg aaaaaatata ttttaatctt tgcactacat
     1621 ttatgtgttg ctgattttgc agcagtaagg gtaaatgccc ctattgacaa ttatttgaat
     1681 caggcaatct ggtcgcaggt attgaataac tttgaggtaa atactcccat tgcagttgtt
     1741 actccctgga tgttttttta tgccaatata agtagtattg ataatgatgt gttttttaag
     1801 aataatcttg aagaagaaaa aatattctcc acaaagaatg ttattctgaa ggaattatat
     1861 agtacggtta ataataattt cttcaaaatg aagcctgttg attcaacaat gattgtgaga
     1921 gcattgtaca aagacagatt gctctacacc ctatctttga atcacttaga cacaacatcg
     1981 actatagatt atctgttgcc ggataatgaa accggagaaa ccgttgtatt tgagcatcat
     2041 ggcaatttgg tgtcaaatcg tcgatttagc ccgaacaata caattgtgac caataatgaa
     2101 tggcaggccg attcactatg tatttctact gtaaacaatg aaactaaaag ttattataca
     2161 gtagaagaaa gtagatataa aaatggagat gtttggagga aaagcatttt cc
//
LOCUS       DATDNM010000445         2354 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1018822, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000445 DATDNM010000000
VERSION     DATDNM010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1018822"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..1404)
                     /gene="murC"
                     /locus_tag="VI413_07585"
     CDS             complement(28..1404)
                     /gene="murC"
                     /locus_tag="VI413_07585"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEY6914520.1"
                     /translation="MNKFTQYYFLGIGGIGMSALARYFYTKGFQVAGYDKTETKLTAD
                     LQAEGIAICFKEAIDQIPVRYTNPENTLIVLTPAVPKDHPQLQYFQENNFTIQKRAQV
                     LGNITRQSKGICIAGTHGKTTTSTIAAHLLYQSQVSCNAFLGGIANNYKTNLLLSSES
                     NLVVIEADEYDRSFHQLSPYMAVITSADPDHLDIYETASAFRESFEHFTSLIRPGGAL
                     VMRKGIDIVPQLQKGVKLYTYSMDEGGDFCAENIRMVKGEIHFDFVTPNDRINDVRLG
                     VPVKINVENSVAAMALAWLNGVTSDEIRTAISSFSGIYRRFNVVYKSDKVVFMDDYAH
                     HPSELKASISSIRNLYPDRKITGIFQPHLYSRTRDFASDFAAALSQLDELILLDIYPA
                     RELPIEGVDSDLILRDVKLENKTLCSKENLLPLLIEKDLDVLVTFGAGDIDKMVPLIK
                     EQLKKTSI"
     gene            complement(1411..>2354)
                     /gene="murG"
                     /locus_tag="VI413_07590"
     CDS             complement(1411..>2354)
                     /gene="murG"
                     /locus_tag="VI413_07590"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEY6914521.1"
                     /translation="PIEGLPVSGFDRKNMLRNVKVLINLFRSIVKARGIIRRFKPDAA
                     IGVGGYASAPTLRAASAFGVPTVLQEQNSYAGVTNKLLAKKAKRICVAYEGMDRFFPK
                     DKIILTGNPVRQDLFSVGPKTEEAYQFFNLDPTKKTILVVGGSLGARTVNQSIIAGLE
                     KLAKTDVQVIWQTGKFYIEDARKAAEPFVSPKLIVTDFVSRMDYAYSIADLVVSRAGA
                     SSISELCLLAKPVILVPSPNVAEDHQTQNALALVRKDAAVMIKDVEAKEQLVDKALEL
                     IENEVELKKLSENILKLAQKDSADRIAEEILKLIRVN"
BASE COUNT          712 a          525 c          436 g          681 t
ORIGIN      
        1 gataagatta ttggatacag gcaattatca aattgacgtt ttttttagtt gctctttaat
       61 taaaggtacc attttatcaa tatcgccggc accaaaagta accaaaacat cgaggtcttt
      121 ttctatcagc aaaggtaata gattttcctt tgagcacaat gtcttgtttt ccagtttaac
      181 atcacgcaaa ataaggtcag aatcaacccc ctcaatgggc aattctcgtg caggataaat
      241 atccagcaaa atcagttcat ctaattgcga caatgcagct gcaaaatccg aggcaaaatc
      301 acgtgttctt gaataaagat gcggttgaaa aataccggtt atctttcggt caggatataa
      361 attacgaata gatgagatgc tggctttcaa ttcgctgggg tgatgcgcat aatcgtccat
      421 aaaaaccacc ttatcagact tatacaccac attaaaacgt cgataaatcc cagaaaatga
      481 tgatatagcg gtacggattt catcacttgt cacaccattc aaccaggcca aagccatagc
      541 tgccacacta ttttctacat ttatttttac cggaacgcct aaacgcacgt cattgattcg
      601 gtcgttgggc gttacaaaat caaaatgaat ttcacctttc accatacgga tattctccgc
      661 gcagaaatca cctccttcgt ccatggaata agtataaagc ttcactcctt tttgcaattg
      721 tggcactata tcaattcctt tgcgcataac gagtgcccct ccgggacgga taagggacgt
      781 gaaatgctca aagctttcgc gaaaagccga agcagtttcg taaatatcca aatgatcagg
      841 atcagccgag gtaatcacag ccatataagg tgaaagctga tgaaatgaac gatcatattc
      901 atccgcctca atcaccacaa ggttactttc ggatgaaagc aacaaatttg tcttataatt
      961 attcgcaatc cctcccaaaa aagcattgca cgaaacctgt gattgataca acaaatgtgc
     1021 ggcaatcgtt gaagtagtag tctttccgtg tgttccggca atacagattc ctttgctctg
     1081 gcgggtaata tttcccaaca cttgagcacg tttttgaatg gtaaaattat tttcctgaaa
     1141 atactgtagt tgcggatgat ccttgggaac agcaggagta agtactatca gtgtattttc
     1201 agggttggta tatcgtacag gaatttgatc tatagcttct ttaaaacaaa tggcaattcc
     1261 ttcagcctgt aaatcagcag tcagtttggt ttcggtttta tcgtaacctg ccacctgaaa
     1321 accttttgta tagaaatacc gggccagggc actcatgcca attccgccga tacctaaaaa
     1381 ataatattgt gtgaacttat tcatcttatt tcaattaacc ctgattaatt ttaaaatctc
     1441 ctctgcaatt ctgtcagccg aatctttttg cgccagcttg agaatatttt cgctcagttt
     1501 tttcaattca acttcatttt caatcaattc aagtgcttta tctaccaatt gttctttagc
     1561 ctcaacatct ttaatcatta ctgctgcatc tttacgaacc aacgccaatg cattttgcgt
     1621 ttgatgatct tcagcaacat tgggagaagg aaccaggata accggtttag caagcagaca
     1681 cagctcggaa atggaactgg ctccagcacg cgaaacaact aagtcggcga tagaataggc
     1741 ataatccatg cgcgaaacaa aatctgtaac aatcagttta ggcgaaacaa atggctctgc
     1801 agccttgcgg gcatcctcaa tatagaattt gccggtttgc cagataacct gaacatcagt
     1861 ttttgccagt ttttcgagac cggcaataat gctttgattt acagttcgtg ctcccaaact
     1921 tccacccaca acaagtattg ttttcttcgt tggatctaaa ttaaaaaact gataagcctc
     1981 ttcggttttg gggcctactg aaaacaaatc ttgtcgaaca ggattgcctg taagtataat
     2041 tttatctttc ggaaagaaac gatccattcc ttcataagcc acacaaattc gtttggcttt
     2101 tttggcaagc agtttattgg taactcctgc gtaagaattt tgctcctgaa gcacggtagg
     2161 caccccgaag gcagaagctg cccggagagt tggtgcgctg gcataaccac ccacaccaat
     2221 agctgcatca ggtttaaaac gacgaatgat gccgcgggct ttcacaatac tacgaaacaa
     2281 attaatcagc actttcacat tccgaagcat atttttccgg tcgaaaccac ttacaggcaa
     2341 tccctcaata ggat
//
LOCUS       DATDNM010000446         3521 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1980714, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000446 DATDNM010000000
VERSION     DATDNM010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3521
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1980714"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..394)
                     /locus_tag="VI413_07595"
     CDS             complement(<1..394)
                     /locus_tag="VI413_07595"
                     /inference="COORDINATES: protein motif:HMM:NF015592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HEY6914522.1"
                     /translation="MNNNKQTDPWCIIEEGFHPENQLDSELVFGLGNGQLSKRANFEE
                     FYSGCTAPGTYMSGIYASRYLNPKDPAADLLTAPDPFSNLPCWTTLNVWLNAEQLDLA
                     RCEIRNFRRTLNMQQGMLERTFEIITAAG"
     gene            complement(416..1954)
                     /locus_tag="VI413_07600"
     CDS             complement(416..1954)
                     /locus_tag="VI413_07600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6914523.1"
                     /translation="MDKPRLSFWQIWNMSFGFLGIQFGFALQNANTSRIFENLGADID
                     KIPILWIAAPVTGLIIQPIIGHWSDKTWNRLGRRKPFFLIGAILASLSLFFMPNSSML
                     WIAAGTLWIMDASINISMEPFRAFVGDMLPSEQRTLGFSMQSFFIGLGAVAGSVLPWI
                     LTNWLGVSNVPHGDSLIPDTVRWSFYVGGAVFILTILVTLITTKEYSPEQLESFRSEV
                     VVQDNIEVTEKHVSARKFLFSGLLFLLVGAVIISLVFYFNSDKQLYILGGILLLIALL
                     FIVVSIMQRRTAKNSMVEIMTDMMSMPKTMLELALVQFFTWIALFSMWIYTTPAITAY
                     HFGTVDVKSEAYNQGANWVGVLFGGYNLFAALVAFLLPVVAKKISRKWTHLVCLMLGG
                     LGLISIYFIKNPDLLILSMVGVGIGWASILSMPYAMLTSALPPGKMGIYMGIFNFFIV
                     LPQILAATILGSITKHLFSGNAIYTIVFGGCSMIIAGLMTLLVEDKDDPISIRKLLNS
                     NDLK"
     gene            complement(1991..3001)
                     /locus_tag="VI413_07605"
     CDS             complement(1991..3001)
                     /locus_tag="VI413_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007486243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY6914524.1"
                     /translation="MRKPPITIKDIARALNISPSTVSRALKNHPDIRQDTKDAVNKYA
                     KENNYKPNTLALSLRTSKNNTIGVIVPEINNYFFSSVLSGIEDVANQADFNVLLCQSS
                     ENYEKEVRNTKALEATRVSGVLASLCKHTTNYDHFQEIIDSDIPLVFFDRICIGINTD
                     RVVVDDYVGAFAAVEYLIQTGCKRIAFYSSPFHLEISKNRKNGYLDALRKYGLKVDES
                     LIRVCDTREEAIIITPEILDRPDRPDGFFAINDHCAAGIMYAVKLAKLRIPEDIAIFG
                     FSDGELARACDPMLSTVEQHGYEMGKHAATLLLDKINGITHGQYTNKIVKTNLIIRGT
                     TK"
BASE COUNT         1191 a          737 c          573 g         1020 t
ORIGIN      
        1 gacctgcagc agtaattatt tcaaacgttc gctccagcat tccttgctgc atattcagtg
       61 ttcgtcgaaa gtttcttatt tcgcagcgag ccaaatccaa ctgttcggca ttaagccaca
      121 cattgagagt tgtccagcag ggaagatttg aaaatggatc gggagcagtc aacaaatccg
      181 cggcaggatc tttcgggttc aaatatctgc tggcataaat acctgacatg taagttcccg
      241 gtgcagtaca tcccgaataa aattcttcaa aatttgcccg cttactaagt tgcccgttgc
      301 ccaaaccaaa aacaagctct gaatcaagtt gattttcagg gtgaaatccc tcttcaataa
      361 tacaccaggg atcagtttgc ttattgttat tcatagtatt agtctagtat cagatttatt
      421 ttaaatcatt actgttcagt aattttctta tacttattgg atcatcttta tcctcaacca
      481 gcaaagtcat caaccctgca ataatcattg agcagccacc aaaaacaatg gtgtaaatag
      541 catttccaga aaacaaatgc ttcgttatgc tgccaagaat tgtagctgcc aatatctgtg
      601 gcaatacaat gaaaaaatta aaaatcccca tataaatccc catcttgcct ggaggtaagg
      661 cacttgtgag catggcataa ggcatggaca agatactagc ccaaccaatt cctactccta
      721 ccatacttaa aatcaacaaa tcaggattct tgataaaata aatagaaatc agtcccaatc
      781 ctcccaacat taaacaaaca agatgagtcc attttctgga tatttttttt gcaaccactg
      841 gtaaaagaaa agcaaccaag gctgcaaaca aattgtagcc accaaataaa acaccaaccc
      901 aattagcacc ttgattatat gcttccgact taacgtcaac agttccaaaa tgataagcgg
      961 ttatggctgg cgttgtataa atccacatcg aaaaaagtgc aatccatgta aaaaactgaa
     1021 ccaaagccag ctccaacatc gtttttggca ttgacatcat gtccgtcata atttcaacca
     1081 tactattttt agcagtgcgc ctttgcataa tacttacaac aatgaacaac agagcaatta
     1141 gaagcaaaat gccacctaaa atataaagtt gcttatcgga attgaaataa aatacaagcg
     1201 aaataatcac tgcgccaacc agcaaaaaga gtaggccact aaataaaaac ttgcgtgccg
     1261 aaacatgttt ttcggtaact tcaatattat cttgaacaac tacttcggag cgaaaagact
     1321 ccaattgctc cggcgaatac tctttagtgg taatcaatgt aacaagaata gtcaaaatga
     1381 aaacagcacc tccaacataa aaagaccagc gtaccgtatc agggatcaac gaatctccgt
     1441 gaggcacatt tgaaactccc agccagttag tcaatatcca gggtaacaca gaccccgcaa
     1501 cagcccctag tccaataaaa aaactttgca ttgagaaacc gagtgttcgt tgctcggatg
     1561 gcaacatatc tccaacaaat gccctaaatg gttccataga aatattgata gacgcatcca
     1621 taatccacaa cgtgccggcc gcaatccaca acattgatga gtttggcata aagaacaaac
     1681 tcaaactggc taaaatagct ccaatcagaa aaaatggctt gcgtcgtccc aaccgattcc
     1741 atgtcttgtc actccaatga ccaataatag gttgaataat caagcctgtt actggagcag
     1801 caatccacaa aattggaatt ttgtcaatat cggcccctaa gttttcaaag atccgacttg
     1861 tgtttgcatt ttgcaaggca aatccgaatt gtatccccag aaatccgaaa ctcatgttcc
     1921 agatttgcca aaaagataaa cgtggtttat ccatattatc aatgatttaa agtagaatta
     1981 gtgtttaaaa ctattttgtt gttcctctga taatcaaatt cgttttcaca attttgttcg
     2041 tatactgacc atgtgttatg ccgttaatct tatccagcaa taaagtggcg gcatgttttc
     2101 ccatttcgta tccatgttgt tctaccgtgc taagcattgg atcacaagct cttgccagct
     2161 ccccgtcaga aaaaccaaaa atggctatat cctcggggat tctcagttta gctaatttta
     2221 cagcatacat aattccagct gcgcaatggt cattaatagc aaaaaaacca tcgggcctgt
     2281 cgggtctgtc caaaatttcg ggggtaataa taatggcttc ttctcgcgtg tcgcaaacac
     2341 gaattaatga ttcatccact ttaagcccat attttcttaa agcatccaaa tagccatttt
     2401 tgcgattctt ggatatttcc aaatgaaatg gagaactata aaaagcaata cgtttacatc
     2461 ctgtttgaat tagatattca accgcagcaa aagcacctac ataatcatca accactacac
     2521 ggtcagtatt aatgccgata catattctgt cgaaaaaaac caatggaata tcgctatcaa
     2581 taatttcctg gaaatggtcg tagtttgtag tatgtttaca caacgaagcc aaaacacccg
     2641 aaacacgtgt tgcttcaagt gctttggtat ttctgacttc tttctcgtaa ttttcgctcg
     2701 attgacacaa aagaacatta aagtcagcct gatttgccac atcttcaatg ccggaaagca
     2761 cggaagaaaa gaaatagtta tttatttccg gaacaataac gccaattgta ttgtttttac
     2821 tcgtacgaag actcagtgcc agagtattag gtttgtaatt attctccttg gcatacttat
     2881 ttacagcatc tttcgtatcc tgtcttatat cgggatgatt tttcaacgca cgcgagactg
     2941 tagaggggga aatattgagc gcacgcgcaa tgtctttaat agtgataggt ggttttctca
     3001 ttcggtatct atttttgttc aattataaaa cagaaatcaa aacaactgat agaaataagg
     3061 tagaatacta aatcatagtc acttacaatc aaacaaaaat aaattttcgt tcctgaaagt
     3121 tttatattca aaatatcagt tgcaaaatta gaacagttta tccgaataaa aaatttttcg
     3181 tataattatt taaaaataca ggcgcaaacg tttgcattga aattttgaat ctttattcca
     3241 aaacttagaa atatctaatt agtattgctc tatttttgtc ccttgaaatg attaacaaac
     3301 aatttattct ataacaaaga actttttaaa cataatcatt gttaaagtat tgaaacaagt
     3361 tgtttgcttt tttataaaac aatcacaagt acaaccttaa aaaaaattaa tgcatgaagt
     3421 acaatcactt taagctaaaa ctacgctcgc ttgtagccat gttagtgata tttgtttttg
     3481 gccaggctgc caatgcacaa caaatatcag tttccggtat t
//
LOCUS       DATDNM010000447         2580 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1125344, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000447 DATDNM010000000
VERSION     DATDNM010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1125344"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1031)
                     /locus_tag="VI413_07610"
     CDS             complement(<1..1031)
                     /locus_tag="VI413_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010536568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEY6914525.1"
                     /translation="MTLIKSISGIRGTIGGPVGDGLNPLDIVRFTAAYATQIKASKQT
                     ESTKIVVGRDARISGEMVNQLVIGTLLGMGFDVVNIGFATTPTTELAVTMENAAGGII
                     LTASHNPKQWNALKLLNEKGEFLNALEGENVLKIAAEESFEFSQVDELGKLAEDFSYT
                     QKHIESVLALELVDVEAIKAAGFSVAIDCVNSVGGIVIPELLAALGVKTVEKLYCEPN
                     GQFPHNPEPLPEHLTEISNLMKQGKADVGFVVDPDVDRLAIICEDGSMFGEEYTLVSI
                     SDYVLQHTPGNTVSNLSSTRALRDVTNNRGGKYTAAAVGEVNVVTAMKATNAVIGGEG
                     NGGVIYPAS"
     gene            complement(1151..1690)
                     /locus_tag="VI413_07615"
     CDS             complement(1151..1690)
                     /locus_tag="VI413_07615"
                     /inference="COORDINATES: protein motif:HMM:NF027435.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4827 family protein"
                     /protein_id="HEY6914526.1"
                     /translation="MKQISYLIILSFFASIAFSSCSDTTYANELKQEKILIAEYIKRN
                     HINVLSSFPADKKWGENDYVLTESGLYFHLVDSGEISVGDTIKANDLVVPRYKEYNLL
                     EVADTLTSNWSTIDYPYPSSFKYLNMTESCTAFHEAAKYMIRNNSRAKLIVKSKIGFE
                     TYWSPATPLAYDLKIQVQQ"
     gene            complement(1795..2310)
                     /locus_tag="VI413_07620"
     CDS             complement(1795..2310)
                     /locus_tag="VI413_07620"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEY6914527.1"
                     /translation="MKKTGFLFLLCLCAGFYSCKKQAPQIPSNKVVVDNTEAKTLLDI
                     NQNLALKEDSILEIFATKKDKSFLKNEIGFWYKIELTGSGPKVTDKSTCNFSYKLTLL
                     NGKTIEEGKKQVVIGKKQIVAGLEAGLKMLHQGDSATFIIPWYLGYGMNGNKPLVLPY
                     TSIIYQIKLDD"
     gene            complement(2343..>2580)
                     /locus_tag="VI413_07625"
     CDS             complement(2343..>2580)
                     /locus_tag="VI413_07625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005861780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914528.1"
                     /translation="EGKRWRFVAKMENGSCSVGLQEVDSLHPFFDLQGSNNIILITTE
                     RYNEFPMMIKGYGAGAGVTAAGVFSDIMSIANIR"
BASE COUNT          721 a          503 c          467 g          889 t
ORIGIN      
        1 tggctggcag gataaataac gccaccgttt ccttcaccac caataactgc gttggtagct
       61 ttcatggctg ttaccacgtt tacttctcca actgcagctg cagtatattt tccaccacga
      121 ttattcgtta cgtcgcgtaa agctcgtgtt gagctcaggt ttgaaacggt gtttcctggt
      181 gtgtgttgca atacataatc cgagattgaa accaatgtgt attcttcacc aaacatgctt
      241 ccatcttcgc aaatgatagc caagcggtct acgtcaggat ctaccacaaa accaacatct
      301 gccttacctt gcttcattaa atttgaaatt tcagtcaaat gctcgggaag aggttccgga
      361 ttgtgtggga attgaccatt aggttcgcaa tataattttt caacggtttt tactcctaat
      421 gcagctaaaa gctctggaat aacaataccg ccaactgaat ttacgcaatc gatagctacg
      481 ctgaaacctg cggctttaat ggcttctaca tctacaagct ccagtgccaa tacgctttca
      541 atatgttttt gtgtatagga aaaatcttcc gcgagtttgc ccagttcgtc aacctgagag
      601 aattcgaaac tttcttcggc tgcaattttt aatacatttt cgccttcaag tgcgttcaga
      661 aattcacctt tttcattcaa aagtttcagt gcattccatt gttttggatt gtggcttgct
      721 gtaagaataa taccgcctgc agcattctcc attgtaacgg ctaattcagt ggtgggtgtt
      781 gtggcaaacc cgatattcac aacatcgaag cccataccta ataaggttcc tataaccagt
      841 tggtttacca tttcgcctga aatacgcgca tccctgccaa caactatttt tgttgattcg
      901 gtttgtttac tagctttaat ttgtgtggca taagctgccg taaatcgcac aatgtcaagg
      961 ggatttaatc catcaccaac cggtccgcct atagttccac gaattccgga gattgatttg
     1021 ataagtgtca tattaattaa gtttgttgtt ctattgtttt aatatcaagg gtgtattaca
     1081 catggctgaa aataaaaaca acaactcaga gcaggtaaac tgttaagttg ttgaattgtt
     1141 ttattcaatt ttattgttgg acttggattt tgaggtcata tgctaaaggg gttgcaggac
     1201 tccagtatgt ttcaaaacca atttttgatt tgacgatcaa ttttgccctc gaattatttc
     1261 taatcatgta tttagcagct tcgtgaaatg ccgtgcatga ttctgtcatg tttaagtact
     1321 tgaaagagct tgggtatggg taatcgattg ttgaccagtt gcttgtgagc gtgtcggcta
     1381 cttcgagtaa attgtattct ttatatctgg gaacaactaa atcatttgct tttatagtat
     1441 cgccaactga aatctctccc gaatcaacca agtgaaaata caaaccactt tctgtcaata
     1501 cataatcatt ctcaccccat ttcttgtctg cagggaaact ggataaaaca tttatgtgat
     1561 ttcgtttaat gtattcggca attaggattt tttcttgttt tagttcgtta gcataagtgg
     1621 tatcgctaca agatgaaaaa gcaattgatg caaagaacga gagaattatt agataagaaa
     1681 tttgtttcat acaagtagat tatttttatt gcaaatatcc gattaaatta tgggaataaa
     1741 aagttaagaa aataaataaa gttataagat atgtagcgat ttgtactttt atcactagtc
     1801 atcaagttta atctgataga ttatggaagt ataaggaaga accagtggtt tatttccatt
     1861 cataccataa cctaaatacc atggaataat aaaagtagca ctatcacctt gatgtaacat
     1921 ttttagccct gcttcaagcc ctgcaacgat ttgttttttg cctattacta cttgcttttt
     1981 gccttcttca atcgttttcc catttagtag ggttagttta tatgaaaagt tacacgttga
     2041 tttatcagtg acctttggcc cacttcctgt gagttctatt ttataccaaa atcctatttc
     2101 atttttcaaa aatgatttgt ctttttttgt ggcaaatatc tcgagtatac tatcttcttt
     2161 taacgctaag ttctggttaa tatcaagaag tgttttggct tcagtgttgt ctacaacaac
     2221 cttgtttgat ggtatttgtg gcgcttgctt tttacatgag taaaatccgg cacacaagca
     2281 tagtaagaat aggaagcctg tttttttcat ttttcactca tcattttcta atacttacag
     2341 ggttatctga tgttggcaat actcattatg tctgagaata ctcctgcggc tgtaactcct
     2401 gcacccgcac catacccttt aatcatcatt gggaattcgt tgtagcgttc agttgtaatc
     2461 aggatgatat tattgcttcc ctgcaaatcg aagaaaggat gtaaactatc aacttcttgt
     2521 aaaccaacgc tgcagcttcc attttccatt ttggccacaa agcgccaacg tttgccttct
//
LOCUS       DATDNM010000448         2040 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_165039, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000448 DATDNM010000000
VERSION     DATDNM010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165039"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..859)
                     /locus_tag="VI413_07630"
     CDS             complement(<1..859)
                     /locus_tag="VI413_07630"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6914529.1"
                     /translation="MESIEKSKVTIRQGTHSENDGLINLTSLTPMKGKISIRVDRKPD
                     FFGLLEMRGHSFVIVAESNNQIVGSYSVSAMPVYLGGVSETAYYLSDFRVHPDYRKSK
                     IALELAEAAILKLQSLQANLLFSTVMSGNEAVSSFLEGSSYWPAAKAAGVFNAYQIIP
                     TSYKAKRSKYVVDEAYSDSSCVGFFNDFAKKFRFSPVLSESSFDNTILLTASLNNELV
                     AAICLSDVSTTKQEVLTGLPFLLKNCVCFINCIRIILSLNKLPGINENIKILYIKSFA
                     CKPEHKAALK"
     gene            1259..1951
                     /locus_tag="VI413_07635"
     CDS             1259..1951
                     /locus_tag="VI413_07635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008779607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEY6914530.1"
                     /translation="MTATFYQNKDTFLVAADCIIMGFRDNELHILITRRPIEPLKGGW
                     SLMGGFVNAPESINEAAERIFGEFTGIKDIYMEQVGAYGEINRDLGERVISIAFYALV
                     NIDEFDTSLAEKYDARWVRLSRLPEMVFDHSKMVKDTIGILQRKAAVKPIGFNLLGEQ
                     FTLPTLQSLYESIYQETIDKRNFRKKLMTMDILEKLDEKDKSSSKKGAFYYKFNKEKY
                     DQLIQQGLHFSL"
BASE COUNT          686 a          358 c          372 g          624 t
ORIGIN      
        1 gttttaatgc agctttatgc tctggtttac acgcgaagga tttgatgtat aatatcttaa
       61 tattttcatt tatgccgggc agtttgttca acgacaaaat tattcgaata caattaataa
      121 aacatacgca gtttttcagc aaaaaaggca gccctgtcaa tacttcctgc tttgttgtac
      181 tgacgtcact taagcaaatt gctgcaacta attcattatt aagcgatgca gtcagtaaaa
      241 tggtgttatc aaatgaactt tcgctcaaaa ccggtgaaaa acgaaacttt ttggcaaaat
      301 cattaaagaa accaacacat gatgagtctg aatatgcctc atcaacaacg tattttgatc
      361 tttttgcttt atatgaggtt ggaataatct gataagcatt aaacacccct gcagctttgg
      421 cagcgggcca gtatgaactt ccctctaaaa atgaacttac tgcctcattt ccagacatca
      481 cggtactaaa aagaagattt gcttgcaacg actggagttt taaaatagca gcttctgcta
      541 attcgagggc gatttttgat tttctgtaat caggatgtac cctgaaatca ctcagataat
      601 atgccgtttc tgaaacaccc cctaaataaa caggcattgc agatactgaa tacgaaccaa
      661 caatctggtt attggactcg gctactataa cgaaagaatg acctctcatt tccagtagcc
      721 cgaaaaaatc aggtttccga tccacacgaa tagaaatttt ccccttcata ggggttagag
      781 aagtcagatt aataaggcca tcattttcgg aatgagttcc ttgtctgata gtaactttag
      841 atttttctat cgattccatt ggtttaggtt ttattttatg agatataaat tgccagagag
      901 catttcattt tgaatgtctg caaccttttt ctaatttgta aacaattgga tattggaatc
      961 ttaagtctga ttgttcgtca acaattcata atttagaaat aaaacaaata ttaattagct
     1021 tctgttcttg ttaaaataag taaatgtttg gatttcgtgc aaaaatggat acaaagcagg
     1081 actcttttgc aaaactgtgt tgtaaaacat aaaaaaatat acacatacat tcaaaaacaa
     1141 gtgttttctt tacacttgtt ttaatgacgg atttatttgc attggcaaat taagatacaa
     1201 cactaaaaat caatagtttt caaatactat ttcagatctg aaaacttata caaaaacaat
     1261 gactgctact ttttaccaga ataaggatac atttctcgtt gcagctgact gcattattat
     1321 gggtttccgc gataatgaat tacatatact cattacacgg cgtcccattg aaccattgaa
     1381 aggcggttgg tcgttaatgg gtggctttgt aaatgccccg gaaagcataa acgaagcagc
     1441 agaacgtatt tttggagaat ttacgggcat taaagatatt tatatggagc aggttggtgc
     1501 ctatggcgag atcaaccgtg acttaggaga acgtgtaatt tccatagcct tttatgccct
     1561 ggtaaatatt gatgagtttg acacctcgct ggcagagaaa tacgatgcac gctgggtacg
     1621 tctttcgcga ttgcctgaga tggtttttga ccacagcaaa atggtaaaag acacaatagg
     1681 aattctgcaa cgcaaagcag ccgttaaacc gattggcttt aatctgttgg gtgaacaatt
     1741 tactctgccc acattacaaa gcttgtacga gtccatttat caggagacaa tagacaaacg
     1801 caatttcaga aaaaagctca tgacaatgga tattctggaa aaactggacg aaaaagacaa
     1861 aagttcatct aaaaaaggag ctttctatta taagttcaat aaagaaaaat acgatcaact
     1921 cattcaacag ggactacact tctcattata atttttttag tcgattaagt gtaatttgaa
     1981 cgcttataaa cagcaaaggg gagtaagagg taaagagtaa gtagattagt aaatagtaac
//
LOCUS       DATDNM010000449         2152 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1766306, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000449 DATDNM010000000
VERSION     DATDNM010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1766306"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1038)
                     /locus_tag="VI413_07640"
     CDS             complement(<1..1038)
                     /locus_tag="VI413_07640"
                     /inference="COORDINATES: protein motif:HMM:NF025059.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEY6914531.1"
                     /translation="MRILSDKVLIGFSAHLIQQQHIRSKRIIFVANFKFSSSVKTNKH
                     IFIEKLQSAINNKELVKLSLTAKKDKASDLKKIIITAVELKKGYCLNFVYRHNTKDIT
                     KNFEIAEGVDLIAKAIDTDFNNAELLGTNNNINLYTLPTGKIQLKSSTVTIVQTPTTF
                     THDRIKDKLIDLKDNIYLRELGITNAGFELRREMSDKYRQINKYIELLAPNLSELSLP
                     ENFHVVDMGSGKGYLTFALYDYLTNNLKHAVNMTGVEFREDLVNTCNSIAEKANFGQL
                     KFEKGTIADTTLEKIDILIALHACDTATDDAIFRGIQYDASLIVCAPCCHKQIRKAMN
                     VTNELGNITKFG"
     gene            complement(1072..1635)
                     /locus_tag="VI413_07645"
     CDS             complement(1072..1635)
                     /locus_tag="VI413_07645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEY6914532.1"
                     /translation="MRNNFNPWHQVVPHTENPDTVKGIIEIPKGNRAKYELDKESGLL
                     RLDRVLYSSMYYPHNYGFIPQSYCDDHDPLDILILSQIEVVPLCIVEAKVIGVMRMLD
                     NGEADDKIIAVASGDPSVNHYNDISELPQYLISETMSFFEDYTKLENKKVIVDKFFDK
                     ETALQIMEDSFVMYKKYYGELHKWFFG"
     gene            complement(1968..>2152)
                     /locus_tag="VI413_07650"
     CDS             complement(1968..>2152)
                     /locus_tag="VI413_07650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914533.1"
                     /translation="YLNEQVKDIDSQTYFIGHSVGCQAVFTVFEQTTGIKKGFTHWWL
                     FICCRLVYCRQSMDHA"
BASE COUNT          599 a          406 c          410 g          737 t
ORIGIN      
        1 gccgaacttc gtaatgttgc ccagctcatt ggtcacattc atggctttgc ggatttgctt
       61 gtggcaacat ggtgcgcaaa caattaatga tgcatcatac tggattccac ggaaaatggc
      121 gtcgtcagtg gccgtgtcgc aggcgtgcag tgcaatcagg atatcaatct tttcgagggt
      181 tgtgtcggca atagttcctt tttcaaattt caattggcca aaatttgctt tttcggcaat
      241 agaattgcag gtattcacca aatcttcccg aaactcaacg ccagtcatgt tcacggcatg
      301 tttcagattg ttcgtcaggt aatcgtatag cgcaaaagtg aggtagcctt tgcccgaacc
      361 catatccacc acatgaaagt tttccggaag tgacagttcg cttaaattgg gtgccagcaa
      421 ttcgatgtat ttattgattt ggcggtactt gtcgctcatt tccctgcgca gttcaaaacc
      481 ggcattggta attcccagct cccgcaggta gatattatcc ttcaaatcaa tcagtttgtc
      541 tttaattctg tcgtgtgtaa aagtggttgg agtctgaacg attgttacgg ttgatgactt
      601 cagttgaatt ttgccggttg gcaaagtgta cagattaatg ttattgttcg tacccaaaag
      661 ttcggcgtta ttgaaatcgg tatcaatggc ttttgcaatc aaatcaacgc cctcggcaat
      721 ttcgaaattt ttggtaatgt ccttcgtgtt atgacgataa acaaaattta aacagtagcc
      781 ctttttcaat tctacagccg taatgataat tttcttcagg tcggaagctt tgtctttttt
      841 ggctgtaagc gacaatttaa ccaactcttt attgttaata gctgattgaa gtttctcaat
      901 gaatatgtgt ttgtttgttt tcacgctgga actgaatttg aaattggcta caaagataat
      961 cctttttgac cggatatgtt gctgttggat aaggtgggct gaaaaaccaa tgagaacctt
     1021 atctgataag attctcattg gtataaatgc agttttttca ggcaaccgga atcaaccgaa
     1081 aaaccattta tgcaattcac cgtagtattt tttatacata acaaaactgt cttccataat
     1141 ttgaagtgcc gtttctttat caaagaattt atcaacaatt acttttttgt tttccaattt
     1201 ggtgtagtct tcgaaaaaac tcatcgtttc tgaaatcagg tattgaggaa gttccgaaat
     1261 gtcgttgtaa tgatttacgc ttgggtcacc ggaagccact gcaataattt tatcatcggc
     1321 ttcgccatta tccagcattc gcattacccc aattactttt gcttcaacaa tacaaagcgg
     1381 cactacttct atttgcgaaa ggattagaat gtccaacggg tcatggtcgt cgcaataact
     1441 ttgtgggata aagccatagt tgtgagggta gtacatagat gaatacagta ctctgtctaa
     1501 acgaagcaat ccgctttctt tatccaactc atattttgcg cggtttcctt ttggaatttc
     1561 gataatacct tttacggtgt caggattttc ggtgtgtggc actacctggt gccatggatt
     1621 gaaattattt ctcatgtatt ttttgtcttt ttttacagtc tgcaaaagta aataataaaa
     1681 cttacttaca gaatgaaagt tgattttatt tttttgaatt aatattattt atttttgagt
     1741 gaaaaatcat tctctcgacc tcaattaata tatcttcttc aattaatctg ttaaagtgtt
     1801 gtttgttctt gcagatattc acttcactat ttaatagttt gatccatagt gatttgtttt
     1861 ggtttaaatc agatgtaaac ggatcgttat cggataatac aaccttcctg aaaaggattc
     1921 tttcagtgat aagtgacaaa ttcatacctg aagtatccag ccacggttta agcgtgatcc
     1981 atggattgtc tacagtaaac caaccggcaa caaataaaaa gccaccaatg tgtaaatcct
     2041 tttttgattc cagttgtttg ttcaaaaacc gtaaaaacag cctggcaacc aacgctgtgt
     2101 ccaatgaaat atgtctgact gtcaatatct ttcacttgct cattcaaata ag
//
LOCUS       DATDNM010000450         2251 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1234015, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000450 DATDNM010000000
VERSION     DATDNM010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1234015"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1258)
                     /locus_tag="VI413_07655"
     CDS             complement(<1..1258)
                     /locus_tag="VI413_07655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY6914534.1"
                     /translation="MKKAIYLFILFLGLNATVFGANPVDKHSFRISKNLTIFNSLFRE
                     LDLYYVDTLNYDKMVKTTIDNMLEKLDPYTVYMPEEETDDLTFMTTGEYAGIGALIMK
                     KDKDICISEPYEGMPAQRNGVRAGDVILEVNGVKVEGMSVSDVSSRLKGTPNTTIKLK
                     LKRPGEKKPLEIAFLREKIQVNPVAYSAVVGDKVGYIMLNEFTDRAAIEIKNAINELV
                     KKNKIESLVLDIRNNGGGLIDEAVKIVGYFVPKGTDVVTTKGKINESDRTYKTPTEPI
                     FPDMKLVVLANRSSASASEILAGSIQDLDRGVIVGERTFGKGLVQNIRPIGFGGHLKV
                     TTAKYYIPSGRCIQAIDYSHRNEDGSVGRVPDSLTHEFLTRNGRKVRDGGGIVPDSLT
                     KDERKLNIAYYIFAQNLYFDYATLYVQ"
     gene            complement(1279..1731)
                     /gene="coaD"
                     /locus_tag="VI413_07660"
     CDS             complement(1279..1731)
                     /gene="coaD"
                     /locus_tag="VI413_07660"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005783477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEY6914535.1"
                     /translation="MKRAIFPGTFDPFTIGHYSVVKRGLNFFDEIVIAIGVNQSKKTL
                     FTIEKRLDIIRQAFEGEARVKVTSYDSLTVDLATSVKADYVLRGLRSVGDFEYERTIA
                     DANRKLTGVETVILFTESEYSYISSTVVRDLISYGKDISGFLPPNVKL"
     gene            1945..>2251
                     /locus_tag="VI413_07665"
     CDS             1945..>2251
                     /locus_tag="VI413_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY6914536.1"
                     /translation="MRVKIGLILLLCGCLLQAVFSIEPVFSFSIPKKVEFAGQPISLE
                     RYDMRERYDREQIIIAYNHSVSMLIIKRANRYFPIIEPILKRNGIPDDFKYLAVIESN
                     "
BASE COUNT          627 a          448 c          446 g          730 t
ORIGIN      
        1 gttgaacata aagcgttgca taatcgaaat acagattttg agcaaaaata taatacgcaa
       61 tattcaattt ccgttcatct ttagttaatg agtccgggac aatcccacca ccatctctca
      121 ctttacgacc attgcgcgtt agaaactcat gagtaaggct gtcgggtaca cgtcccacac
      181 tgccgtcttc atttctatga ctgtaatcta tggcctgaat gcaacgacca cttggaatgt
      241 aatatttggc tgttgtaact ttcagatgtc cgccgaagcc tattggacga atgttttgta
      301 ccagcccttt tccaaatgtg cgttcgccaa ctatcactcc gcggtcaagg tcctgaatgg
      361 aacctgccag aatttcggaa gcggaagcag aagatcggtt tgccaatacc accagtttca
      421 tgtctggaaa gatcggttca gttggtgttt tataagtccg gtccgattca ttgatttttc
      481 ctttggtagt taccacatcg gtgcctttgg gcacaaaata tccaacaatt ttcaccgctt
      541 cgtctatcaa accgcctcca ttgtttcgaa tatccagaac tagtgattca attttattct
      601 tttttaccag ctcgttgata gcatttttta tctcaatagc agccctgtct gtaaattcat
      661 taagcattat ataacctact ttgtcgccta caacggcaga atatgcaaca gggtttacct
      721 gaattttttc gcgtaagaaa gctatttcga gtggcttctt ctcgcccgga cgctttaatt
      781 ttaatttgat ggtagtattt ggcgttcctt tcaagcggga actaacatcg cttaccgaca
      841 tgccttctac tttaacacca tttacttcaa gtatcacatc gcctgcgcgt acaccgttgc
      901 gttgagccgg cattccctca taaggttcgg aaatgcagat gtctttatct tttttcataa
      961 tgagtgcacc aattcctgcg tattcgccgg tggtcataaa agtgaggtca tccgtttctt
     1021 cttcgggcat ataaactgta taaggatcca gcttttcgag catgttgtcg atagtggttt
     1081 tcaccatttt gtcgtaattc agtgtgtcca cataatacaa atccaactcc cgaaataaag
     1141 agttgaaaat tgtgaggttc ttgctgattc ggaaactgtg cttgtctacc ggatttgcgc
     1201 caaaaactgt tgcatttaag cccaaaaaca ggatgaataa atatatggct ttcttcataa
     1261 gagtatgttt ggtaataatt aaagttttac atttgggggc aaaaaacctg aaatatcttt
     1321 tccataagaa attaaatctc gaacaacggt ggaggaaata taagagtatt ccgattcggt
     1381 aaaaagaata acagtttcta ctccggttag tttccggttg gcatcagcaa tggtgcgctc
     1441 atattcaaaa tcgcccacgg agcgtaagcc gcgtagaaca tagtctgctt taacggaagt
     1501 agccagatcg actgtaaggc tgtcatacga agttactttt acgcgtgctt caccctcaaa
     1561 tgcctgacgt atgatatcca accgtttttc tatggtgaaa agtgttttct tggattggtt
     1621 cacgccgata gcaatgacaa tctcatcaaa aaagtttaag cctcgtttaa cgacgctata
     1681 atgacctatg gtaaacggat cgaatgttcc ggggaaaatg gctcgtttca tgatttatgt
     1741 tttgagatgg ttcaattttt gttcattggt aactcggcaa gtattgccgc caaaatgaag
     1801 cacaaagata gaaaaattta gacttgacca ttaataacag ggcttatagt ttaatatttt
     1861 tagtttttaa gtggacaatt tcagtttgta gtttatcttt gtgtaacatc aatagttgaa
     1921 tttttaaatg tttaacctaa agttatgaga gttaaaatcg gcctaatctt gcttttgtgt
     1981 ggttgccttt tgcaggcagt tttttccata gaacctgttt tctcgttctc aattccgaag
     2041 aaggttgagt ttgcagggca gccaatttca cttgaacgtt atgatatgcg tgaacgttat
     2101 gatcgtgagc agataattat tgcctataat cattctgtaa gtatgttgat aattaaacgg
     2161 gctaaccggt atttcccgat tattgaacca atattgaaac gaaatggaat acccgatgat
     2221 tttaaatacc tggcggtaat tgaaagtaat t
//
LOCUS       DATDNM010000451         7321 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2088121, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000451 DATDNM010000000
VERSION     DATDNM010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7321
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2088121"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..78
                     /locus_tag="VI413_07670"
     CDS             <1..78
                     /locus_tag="VI413_07670"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HEY6914537.1"
                     /translation="ENGALYWHLVDLIWIFLFPLMYLIS"
     gene            95..379
                     /locus_tag="VI413_07675"
     CDS             95..379
                     /locus_tag="VI413_07675"
                     /inference="COORDINATES: protein motif:HMM:TIGR02229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase subunit IV family protein"
                     /protein_id="HEY6914538.1"
                     /translation="MANNTSHTTEYRVLAKVLILLMFLTFLTISVTAYNLGALTVTIA
                     LLIAGVKAFMVMSNFMHLKHESKFLRVLVAMVFVLFAVIVLITFIDYAYR"
     gene            438..1355
                     /gene="coxB"
                     /locus_tag="VI413_07680"
     CDS             438..1355
                     /gene="coxB"
                     /locus_tag="VI413_07680"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HEY6914539.1"
                     /translation="MFSNASNFVHGVDNAFLIIFGISFFFLISLTALMIFFVIKYNKK
                     RNVKAVQVKDSTWLEITWTTIPLLLVLFMFYIGWAGFLPMRTVPKDAMHVKAIGKMWK
                     WTFEYEGNKQSDTLVLPINKAVKVDLVSNDVLHGFSVPAFRIKEDVVPYKKNYAWFIP
                     GELGDFDLFCTVYCGLSHSYMYAIIRIVPQKDFDKWVTALPVKKAQDSNAGYATLEKN
                     GCLACHSIDGSKTVGPSFKGLYGSSVDVMTNGTKRKIKVDEAYVKSSVFEPNADVVVD
                     YQQGVMKSYKGIITDKDIQSINEYLKNLK"
     gene            1409..2269
                     /locus_tag="VI413_07685"
     CDS             1409..2269
                     /locus_tag="VI413_07685"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HEY6914540.1"
                     /translation="MTNLSTILSLIKYKVSIAVTFTTITGYIVFTRSFDLYIIPLGLG
                     VFLLASGSSALNEFQESEYDAKMPRTKNRPIPTGKLSPLNALIISLIFILSGLSVLYC
                     FFNETTALLGIFNVLWYNLLYTNLKRITAFAVVPGSLVGAIPAFIGWTAAGGYVFNTT
                     IVYIAFFMFIWQIPHFWLLMVKYGKEYEQAGFPTINQTMSPDNLRTIILVWIIATSIS
                     SVMVPLFLQNISLVFFIAIFILNISFVAIFIKLSFGKIAEINFKQSFISINIYMMVFM
                     LMLIVFHLAV"
     gene            complement(2650..3645)
                     /locus_tag="VI413_07690"
     CDS             complement(2650..3645)
                     /locus_tag="VI413_07690"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY6914541.1"
                     /translation="MAIYSILLSFYNSALLEKNYSLLAYYVPVNYILITLIGPFIYFY
                     IKTLLNKPVIVRSWKFWIHAISILPAFIFNLYFLSLNRMERIDLLILSFKEGVFSFTI
                     LNIIFYIQMTLYLFVCYRIITDQLNVSKKVLKGAIMVDVSWLKTLMMIDLIVMFVSAP
                     LCFYFANEQTSNIIAQLAMDIQLVYVFFKSTWQTGIFPGENISETKPKDPILKIADDV
                     VDDYFKTLMTFMQDKKPYLQENCSIQTVSEQTGISVHHLSNILNQRFDKSFPDYINEY
                     RINEAIRILNSDQSSKMTLEAIGYECGFGSKSSFNKAFKKLTNSTPSIYRLRSKS"
     gene            3961..4806
                     /gene="lipA"
                     /locus_tag="VI413_07695"
     CDS             3961..4806
                     /gene="lipA"
                     /locus_tag="VI413_07695"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HEY6914542.1"
                     /translation="MTYLRKPEWLKTKIYSEKEFSHVNKVINQHGLHTICTSGRCPNQ
                     SECWSKGTATLMILGEICTRSCKFCNTLTGRPLPPDPNEPQKVADSIRLMKLKHAVVT
                     SVDRDDMTDGGAAHWAKTIHSIKEVNPETTLEVLIPDFDGKTNLIDLIIAEKPNIISH
                     NLETVERLTPKIRTKAKYRTSLEVLKYISENGIVAKTGIMLGLGETEEEVLQLMDDAL
                     KSGCSILTIGQYMQPSRKNIVVSEYITPDKFEEYKQIGLKKGFRQVESGPFVRSSYHA
                     EKHVI"
     gene            5214..5720
                     /locus_tag="VI413_07700"
     CDS             5214..5720
                     /locus_tag="VI413_07700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019537761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY6914543.1"
                     /translation="MKNVQFENELVALQSNMRNFAFSLTLNRDDAEDLLQDTTLKVLD
                     NQEKFTDNVNFKGWVLTIMKNIFINNYRKIVRNQTVVDKTEDLHHLNLPQNSGFDSPE
                     GSYAIGEITNSIASFADEYRVPFSMHIQGFKYEEIAQTMNLPIGTVKSRIFLARKRLQ
                     EQLKDYRY"
     gene            5840..6214
                     /locus_tag="VI413_07705"
     CDS             5840..6214
                     /locus_tag="VI413_07705"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: protein motif:HMM:NF013456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEY6914544.1"
                     /translation="MNTAIIMLGSNTNAEQNIDLAKEKISEFYEIVSFSSPLITKPHG
                     KNYKSDFRNEAVKLLSDETAEETKATFKQIEIDLGRTPESKKLGHMPIDIDLIYWNEA
                     IVNKDYERFDFVRKCTDEIVNL"
     gene            6379..7248
                     /locus_tag="VI413_07710"
     CDS             6379..7248
                     /locus_tag="VI413_07710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside phosphorylase"
                     /protein_id="HEY6914545.1"
                     /translation="MKHFPPSELIINSDGSIFHLHLKPEQLADNVILVGDPGRVKLIA
                     DYFDSQECSVSSREFNTITGNYKGKRISVVSTGIGTDNIDIVMNELDALSNIDFETRT
                     EKSGFRQLTIVRIGTSGGMQPDIPLGSFLISEKSIGFDGMLNFYAGRDSVSDLDFEEA
                     MKKHLVWNPQLAAPYVVDADKELVNRIGKADMLRGVTISANGFYGPQGRVLRIDLADM
                     HLNDKIESFRFGKYKITNYEMEGSAIAGLSKLMGHKAMTVCCIIANRRVEAANTDYKP
                     YIEQLVQTVLDRI"
BASE COUNT         2513 a         1240 c         1255 g         2313 t
ORIGIN      
        1 gaaaatggag cactttactg gcaccttgtc gatctgatct ggattttctt attcccgttg
       61 atgtatttaa tttcataatt caaactatac aaaaatggca aataacacat cacatacaac
      121 agaatacagg gttttagcaa aggttctgat attactcatg tttctcacat ttcttacaat
      181 ttcagtaact gcatacaatc ttggagcttt aactgtgact attgctctac taattgcggg
      241 agtgaaagct tttatggtta tgtctaattt catgcacttg aaacacgaaa gcaagtttct
      301 gcgtgtcctt gtagcaatgg ttttcgtgct ctttgcagtg attgttctga ttacctttat
      361 agattacgca tacagataaa attaagttct tatattgatt ccttacttaa tgttccggaa
      421 ttttaaacta aaaaaatatg ttcagtaacg catcaaattt tgttcacggt gtagataatg
      481 cattcttaat catttttgga atctcctttt ttttccttat ctcattaact gcattaatga
      541 tcttttttgt tattaagtat aacaaaaaaa ggaatgtaaa agccgtacag gtcaaggata
      601 gtacatggtt agaaattaca tggaccacaa ttccattgtt attggttctc ttcatgtttt
      661 acatcgggtg ggccggattt ctaccaatgc gtacagtccc taaagatgcc atgcatgtaa
      721 aggcaatagg taaaatgtgg aaatggactt ttgagtacga gggcaacaag caatctgaca
      781 cgttggtatt accaataaac aaggcagtta aagtagattt agtatcaaac gacgttctgc
      841 atggattttc agtgcctgca tttagaataa aagaagatgt ggttccgtat aaaaagaatt
      901 atgcatggtt cattcctggc gaactgggtg atttcgactt gttctgtacc gtgtattgcg
      961 ggttaagtca ctcatacatg tatgcaatta tccggattgt accacagaaa gattttgata
     1021 aatgggtaac cgctttgccc gttaaaaagg ctcaggattc taatgccgga tacgcaacat
     1081 tggagaaaaa cggttgccta gcgtgccatt ccattgacgg atcaaaaact gtagggccta
     1141 gttttaaagg attgtatggc tcatcagtag atgtcatgac caatggaaca aagcgaaaaa
     1201 tcaaggtaga tgaagcatat gttaaatcat cagtatttga accaaatgcc gatgtggttg
     1261 ttgattacca acaaggtgtc atgaaatctt ataagggcat tattacagat aaagatattc
     1321 aatctataaa tgaatacctc aaaaatctca aatgattaat aataaaacaa acctaatata
     1381 tttactataa gaggttttga cttgaactat gactaattta agtactattc tatccttgat
     1441 taaatacaag gtttctattg cagtaacatt cacgaccatt accggatata ttgtttttac
     1501 aagatcattt gatctgtata ttataccatt aggtctgggt gtatttcttc ttgccagcgg
     1561 ttcaagtgct ttaaatgaat ttcaggaaag tgaatacgat gcaaaaatgc caagaacaaa
     1621 gaaccggcct attcctaccg gcaaactatc tccgttgaat gctttaatta tttctttaat
     1681 tttcatttta tccggtctgt cggttttgta ttgttttttc aacgaaacga cagcattatt
     1741 gggaattttc aacgttttat ggtataacct tttatatacc aatttaaagc gaattacggc
     1801 ttttgcagtt gttcccggat cattggtagg tgccattccg gcttttatcg gttggacggc
     1861 tgcaggaggt tatgtattca ataccacgat tgtttatata gcttttttca tgtttatctg
     1921 gcaaatacct catttttggt tgttgatggt aaaatatgga aaagaatatg aacaagccgg
     1981 ctttccgact attaatcaaa ccatgagccc tgataaccta cgtacgatta ttttagtctg
     2041 gattattgcg acttcaattt catctgtgat ggtaccgctg tttcttcaga atatctcgct
     2101 ggttttcttt atagccatat tcattctgaa tatttcattt gtggctattt tcataaaact
     2161 ctcttttggt aaaattgcgg agataaactt taaacagtcc tttataagta taaacattta
     2221 catgatggtt ttcatgctga tgcttattgt gtttcatttg gctgtttaac acattaccat
     2281 ttctttatct cagcaagaat aaaatcctga ataaaaacag atagtttata aaaacagata
     2341 acccgacgta agcataactt acatcgggtt ttttcataga aaaggtaaac agacaatttc
     2401 atagtctggt cttaacgacc aacggtagta tattttttat tgttattcca aaactgtaga
     2461 actactaaaa aagtattttt acgttttttg ggaattggac tgtaaaaata caaaaaacag
     2521 ggtctattta acgtatcatt ttataaaacc atacaaattt ctgctacaat ttgaaaccca
     2581 attgtcgtaa aataaatgat aataaacaac ttactgttgc agaatgacaa tatgtatatt
     2641 tgataatttt tacgatttgc ttcgtaatct atatatggaa ggtgtagaat tggtaagttt
     2701 cttgaatgct ttgttgaagc tacttttaga accaaagcca cattcgtagc caattgcctc
     2761 taaagtcatt tttgaagatt gatcagaatt caaaattctt atagcttcgt taattctgta
     2821 ctcattgata taatctggaa aacttttatc aaaccgttga ttcaaaatat tggacaaatg
     2881 atgaacagaa atacccgtct gttctgaaac ggtttggata ctacaatttt cctgcaaata
     2941 tggtttctta tcctgcataa aagtcattaa agtcttaaaa taatcgtcaa caacatcatc
     3001 tgcaattttg agaattggat cttttggttt agtttctgaa atattttcac ccggaaaaat
     3061 tccggtctgc caggtagatt taaagaaaac ataaaccaat tggatatcca ttgcaagttg
     3121 tgcaattata ttactggttt gctcattggc aaaataaaaa caaagaggtg ctgatacaaa
     3181 cattacaatt aaatcaatca tcattaacgt tttcaaccat gaaacatcaa ccataattgc
     3241 accttttaaa acttttttgg aaacattcaa ctggtctgtt attatcctat agcaaacaaa
     3301 caaatacagg gtcatttgta tataaaaaat tatattgagt attgtgaatg aaaatactcc
     3361 ttctttaaaa ctcaatatca acaaatcaat cctctccatt ctattgagcg aaagaaagta
     3421 taaattaaaa atgaatgccg gtaaaatgga aattgcatgt atccaaaact tccatgaacg
     3481 aacgataacc ggcttattca aaagagtttt gatataaaaa taaatgaatg gaccgattaa
     3541 agtgatcaaa atataattaa caggcacata ataagccagt aatgaataat tcttctcaag
     3601 aagtgcagaa ttatagaatg aaagtaaaat gctataaata gccattatta aaaacaaaaa
     3661 acccaaaacc tgattgtctt ttctaagagg ttttttcttt aaaagcaaaa ctgcagaaaa
     3721 aagcaaataa ttaaatcccg aaataaggga aatatatttc aaaaacatat ttttatctat
     3781 tttaatgtat ttgcaaagaa aacaaaaata atcgattaaa cgaatgatac aataacaata
     3841 acaataacaa caaagtattg agctattatt aacaggtatt aaatctggtc tgatgtagaa
     3901 aaaatcaatc tgatcgataa gtttttgtac ctttgtttat tcaatttaaa aaaaattaca
     3961 atgacatatc ttagaaaacc cgaatggcta aaaaccaaaa tatatagtga aaaagaattt
     4021 tcacacgtta acaaagtaat taatcaacat ggcttacata caatctgcac aagtgggcgc
     4081 tgtccgaatc agagtgaatg ttggagtaaa ggaactgcaa cacttatgat tctgggagaa
     4141 atatgtacac gttcatgcaa attctgtaat acattaacag gccggccact cccacccgac
     4201 cctaatgagc ctcaaaaagt agctgactct atccggctta tgaaattgaa acatgcagtt
     4261 gttacatctg tcgacaggga tgacatgaca gatggaggag cagcgcattg ggcaaaaaca
     4321 attcattcta tcaaagaagt gaatccggaa acaacactgg aagttttaat ccctgacttt
     4381 gatggtaaaa ccaacctgat tgatttgatt atagctgaaa aacccaatat catttctcac
     4441 aacctggaaa cagttgaaag actgactccc aaaattcgta ctaaggctaa gtacagaacc
     4501 agccttgaag ttctgaaata catttcggaa aacggaatcg tagctaaaac cggtataatg
     4561 ctcggattag gtgaaacgga agaagaagta ctccaactaa tggacgatgc actaaaaagt
     4621 ggatgttcaa ttctaactat cggacaatat atgcaacctt cgcgaaagaa tatcgttgta
     4681 agtgaatata taactcccga caaattcgaa gaatacaaac aaataggatt gaaaaaagga
     4741 ttcaggcaag tagaaagcgg tccatttgtc cgatcatcat atcatgcaga gaaacatgtg
     4801 atttaagtta tatttcgcat taacttgtat aaatctttct ctgtttttat tctcagaata
     4861 atcagaaaaa tatttacaat tctgtttttg ccttgaaaat agagcctttt gaagtttgta
     4921 attgttacaa tttcaaaata aatacaaaat tatcgcattc cgttaatagt ttttgcgaaa
     4981 acatagttgg aatttagaaa atatcatata tatttgtatc gaaaatctaa gacaaatatt
     5041 ttcgaaggag atctttctat ttcattcttc agtatagaca actgacaatt atttaattat
     5101 ttctatttca gaaattattt ttcagataac gattcgtttt agatgaaaat taccaacatc
     5161 gtgttattga ccaacactat gttttattta ttcacacata aaactgttta attatgaaaa
     5221 atgtacaatt tgaaaatgaa ttagtagcgc tacaaagtaa catgcgtaac ttcgcgttct
     5281 cattaacact aaaccgtgat gatgcagagg atttgcttca agacactaca cttaaagtat
     5341 tggacaatca ggaaaaattt actgacaatg tcaatttcaa aggctgggta ctgacaatta
     5401 tgaagaatat cttcataaac aactatcgta aaattgtacg taaccagaca gtagttgata
     5461 aaacagaaga cttgcatcat ttaaacttgc cacaaaattc aggttttgat agccctgaag
     5521 gatcttatgc cattggcgaa attacaaata gtattgcatc atttgccgat gagtaccgcg
     5581 taccattctc catgcacata cagggattta aatatgaaga aattgcacaa actatgaatt
     5641 tacctatcgg aactgtaaaa agccgtatat tcttagcacg caaaagactc caggaacaac
     5701 tcaaagatta ccgttattaa tttatattgc aaaacatgga aaagccgaag aacaacactt
     5761 cggctttttt gtttactatt taaatgtcaa ttttattaac tcctattcta atctgacgaa
     5821 caataaactt ttcaatttta tgaataccgc tataattatg ttgggaagca ataccaacgc
     5881 cgaacaaaat attgatttag ccaaagagaa aatctctgag ttttacgaaa ttgtttcgtt
     5941 tagctcacca cttattacaa aacctcatgg taaaaactat aaatctgatt ttcggaacga
     6001 ggcagtaaaa ttgctttcgg acgaaacggc agaagaaacg aaagctacat tcaaacaaat
     6061 tgaaattgac cttggcagaa cccctgaaag caaaaaactg ggacatatgc ctattgatat
     6121 agatctgatc tactggaacg aagctattgt aaacaaagat tatgaacgtt ttgattttgt
     6181 acggaaatgt accgacgaaa ttgtgaacct ttgattttat cagtatcatt agcttttttc
     6241 catttatttt ctttccgctt ctcccccaaa aacattttta aaattatgct tagggaatcg
     6301 taaattctga atcaaaaaat aagtatattt gtcttttttc caaaataacg gaatatactt
     6361 attaatacat tgatagtcat gaaacacttc ccaccatccg aattaattat aaatagtgat
     6421 ggaagcattt tccacctgca cttaaaaccc gagcaactgg ctgataatgt gattttagtt
     6481 ggcgatccgg gtcgtgttaa attgatagct gactattttg attcgcagga atgctcagtt
     6541 tcaagccgcg agttcaacac cataaccggt aattacaaag gcaagcgaat ttctgtagtt
     6601 tccaccggta ttggaaccga caatattgat attgtgatga acgaattgga cgcattatcc
     6661 aatatcgatt ttgaaacccg gacggaaaaa agtggattca gacaactaac gattgttcgc
     6721 attggcacat cgggcggcat gcaaccggat attccactgg gtagttttct tatttctgaa
     6781 aaatcaatcg gttttgatgg catgttgaat ttctatgccg gacgtgactc tgtgagtgat
     6841 ttggattttg aagaagcaat gaaaaagcat ctggtatgga atccccaact tgcggcacct
     6901 tatgttgttg atgccgataa agaactggta aaccgtattg gtaaagctga tatgcttcgg
     6961 ggcgtaacta tttcggcaaa tggattttat ggcccccagg ggcgcgtact gcgcattgat
     7021 ctggctgata tgcatttgaa cgataaaatt gagagcttcc gctttggaaa atataaaatt
     7081 acgaactacg aaatggaagg ttctgccatt gcagggctat caaaactaat gggccacaaa
     7141 gccatgacag tgtgttgtat tattgcaaac cgccgcgtgg aagctgcaaa taccgattat
     7201 aaaccttata ttgagcaact ggtacaaacc gttttggata gaatttaaac catgtcaact
     7261 ataaccgcca tatcaaccgc tccgggtgta ggaggaattg ctgtaattcg cgtatcggga
     7321 a
//
LOCUS       DATDNM010000452         3042 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1552740, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000452 DATDNM010000000
VERSION     DATDNM010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1552740"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1656
                     /locus_tag="VI413_07715"
     CDS             <1..1656
                     /locus_tag="VI413_07715"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HEY6914546.1"
                     /translation="KVDTSAVNQTVSLKLTLKDSIPENALTVYHINNVFVDQNYSLSD
                     EVADSTKDTIMVQNTVFMGNEEEMNIHPKVILRSVYLRKHEIYSRQNHNITLNRLMTM
                     GNFKFVQVKFSDSDTTATNYLDATILLTPMPKHTFRAELDLVTKSNKYTGPRMNFSLL
                     NRNAFKGAELLNLSLAGSFEAQLSGPNKSQFSYSVNPQVELTFPRFLVPFHIKPSNSS
                     YIPKTSFSLSYNYQKRVNYFDMSTFQFMYGFKWKESVRTEHEFNPVSISNTSLMNESA
                     AFIDILENRPYLKKSYEEQFIAGGNYSFTYSEQMLTGKMLQYYLHFTAETAGNLFSLV
                     KVIGGETPSPENPLKIVGSIYSQYAKLSVDGRAYYNFRDKNKMALRFFAGVASAYGNS
                     STLPYNKQFFSGGPNSIRAFQINSVGPGTYLQNDSTTSFLQLGGDIKVEANAEYRFGI
                     YRFVKGALFIDAGNVWLQKSNPANIGSPFAFNSFINELAIGAGIGLRVDVSFFVLRFD
                     LAMPLRKPWLPANNRWVINQIDFANPTWRSNNLVLNIAIGYPF"
     gene            complement(1689..2138)
                     /locus_tag="VI413_07720"
     CDS             complement(1689..2138)
                     /locus_tag="VI413_07720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914547.1"
                     /translation="MKKSTSIFLFILFATATSFAQRNFFVNDSLQTEKNKHKTWELYA
                     YNSISQKFDSHQAYVSVIGLAIMADKLVVDITYRGGCGDYYFKLYEKYELIDGVPTVN
                     LLPLVVNNDKCELIQLETINFDFTKIRAKYEKPFKLKIGRFENMINE"
     gene            2528..>3042
                     /locus_tag="VI413_07725"
     CDS             2528..>3042
                     /locus_tag="VI413_07725"
                     /inference="COORDINATES: protein motif:HMM:NF042645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6600 domain-containing protein"
                     /protein_id="HEY6914548.1"
                     /translation="MKSNIKIFTLILVLTTSCMVLPRQTEAQQQNVSFQVFYDELSPY
                     GQWIDYDNYGYVWIPDAGYDFAPYSTNGRWIMTQYGWTWASDYNWGWAAFHYGRWSFN
                     DSFGWYWVPDNEWGPAWVNWRQADGYYGWSPMEPGMTTSRSFNNHYDNNYNNWYFVRA
                     RDFDRANVNQY"
BASE COUNT          913 a          588 c          604 g          937 t
ORIGIN      
        1 aaagtagata cttcagctgt aaatcaaact gtttcgttga aactgacctt gaaagacagt
       61 attcctgaga acgcactgac cgtttatcat atcaacaatg tttttgtaga tcagaattac
      121 tcgttgagcg atgaagttgc agatagtaca aaagatacaa tcatggttca aaacaccgta
      181 tttatgggta acgaagaaga aatgaatata catccgaaag tgattttacg ttccgtctat
      241 ttacggaaac acgaaattta ctcccgtcaa aaccataata ttaccctgaa ccggttgatg
      301 acgatgggca atttcaaatt cgttcaggtg aaattttccg acagcgacac aacagcgact
      361 aattacctag atgcaaccat tctgcttaca cccatgccaa aacatacgtt ccgcgccgaa
      421 ctcgacctgg ttacaaagtc aaataaatat accggaccac gcatgaattt tagcttgttg
      481 aaccggaatg cgtttaaagg tgccgaactg ctcaatctct ctttggcagg atcgtttgaa
      541 gcacaactga gtggtccaaa caagagtcag ttttcttatt ccgttaatcc acaagttgaa
      601 ctgacatttc cacgttttct ggttccgttc cacattaaac catcaaacag cagctatatt
      661 cccaaaacaa gtttctcact ctcgtataac taccagaaaa gggtcaatta tttcgatatg
      721 agcactttcc agtttatgta cggttttaaa tggaaagaaa gtgtccggac agaacatgaa
      781 ttcaatcctg taagcattag taatacttca ctaatgaatg aatcagcagc attcattgat
      841 atactcgaaa acagacctta tttgaaaaaa agttacgagg agcagtttat tgcaggtgga
      901 aattattcat ttacctacag cgaacaaatg ctcaccggaa aaatgctgca atattattta
      961 cattttacgg ccgaaacagc cggtaatctt ttctctctgg tgaaagtaat tggcggtgag
     1021 acaccatcgc ctgagaatcc tttgaaaatt gttggttcta tctattcgca atatgccaaa
     1081 ctaagtgttg atggccgtgc ttattataat ttccgcgata aaaataagat ggcattacgg
     1141 ttttttgcag gagtggcaag tgcatatgga aactcgtcta cgttgcctta caacaaacag
     1201 ttcttcagtg gcggacctaa tagtatccgg gcattccaaa taaactcagt tggtccggga
     1261 acttatcttc agaatgatag taccaccagt ttcttgcaat tgggtggtga tataaaagtg
     1321 gaagcaaacg ctgaatatcg ttttggcatt tatcggttcg taaaaggtgc gttgtttata
     1381 gatgccggaa atgtgtggtt gcaaaaatca aatccggcca atatcggaag tccgtttgct
     1441 ttcaatagtt ttataaatga actggctatt ggtgccggaa ttggactacg cgttgatgtt
     1501 tcgttttttg tattgcgatt cgatctggcc atgccgttac ggaaaccctg gctgcctgct
     1561 aataaccgct gggtaattaa tcagattgac tttgcaaatc cgacctggag aagtaataac
     1621 ctggtgctga atattgctat tggatacccg ttttaattgc aaacagtcaa aggggtaaca
     1681 ggtcaaacct actcattaat catattctca aacctgccta tttttagttt aaatggtttt
     1741 tcatatttcg ccctgatttt ggtgaaatcg aaattgattg tttccagttg aatcagctcg
     1801 catttatcgt tattcaccac caggggtaac agattgacgg taggaacgcc atcaatcagt
     1861 tcgtattttt cgtagagttt gaagtaataa tcgccgcatc ctccccgata agtaatatcc
     1921 accaccagct tatcggccat tatggcaaga ccaataacag atacataagc ttgatggcta
     1981 tcaaatttct gtgaaatgga attgtatgca tatagctccc acgttttgtg tttgtttttt
     2041 tctgtttgca agctatcgtt tacaaaaaaa ttgcgctgtg caaacgaagt ggcagttgcg
     2101 aacaagatga acagaaaaat ggatgttgac tttttcataa tcaattattt tttagttatc
     2161 gcatagttta agttgctttt gtcactgtaa agatacaata atataattac ctaggtgtat
     2221 gagttttatc cctaattggt gaatatcttt aattaaatgc cggaacctgt gaattattca
     2281 attaagtaag atatcagaac cagaaatcaa gacacgtttc ttgtttttgt tgattctcaa
     2341 ttactgcctc atgtctggtt ccattgtcta aaatcctggc tcttggttct atatgtgaat
     2401 tatgtaactc attccatgaa ttgtgtaaca catcaaactt ccggccatgc tatctttgac
     2461 agataataca attcacctaa agcactgtat tataagtaga aatttaattt ccaaaatacc
     2521 tactctcatg aaatcaaaca ttaagatttt cacattaata ctcgtgctga ccacatcgtg
     2581 catggtattg ccaaggcaaa ctgaagcgca acaacagaat gttagctttc aggtctttta
     2641 tgatgaactg agcccgtatg gccaatggat agactatgac aattatggtt atgtctggat
     2701 tcccgatgcg ggatatgatt ttgcaccata ctcaactaat ggtcgttgga ttatgaccca
     2761 atacggttgg acctgggctt cggattataa ctggggctgg gcagcatttc attatggtcg
     2821 ctggagtttc aacgattcat ttggttggta ctgggtgccc gataatgaat ggggtccggc
     2881 atgggttaac tggcgtcaag ccgatggtta ttacggttgg tcacctatgg aaccgggtat
     2941 gaccacaagc aggagtttta acaatcatta cgataacaat tataacaatt ggtattttgt
     3001 gcgcgccagg gattttgaca gagccaatgt caatcaatat ta
//
LOCUS       DATDNM010000453         4202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_165509, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000453 DATDNM010000000
VERSION     DATDNM010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4202
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165509"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1835
                     /locus_tag="VI413_07730"
     CDS             <1..1835
                     /locus_tag="VI413_07730"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HEY6914549.1"
                     /translation="RLHSSITLNNYDLKYHRFFWVINPAQRFISGSVTSYFTATSEPM
                     NCIQFELKAALTVDSAIFAGSKAIVDHTDSLVTITFSHSVLQGQLDSLTLFYHGVPPS
                     NGFGSFETYVHNGAPSMWTLSEPYGASDWWPSKNDLTDKIDSIDVYVVMPKGNHAASN
                     GILISEKPYVANSTIAHWKHRYPIASYLIAIAVTNYAQYSDHYINGTDSLEILNYVYP
                     EDSVEIRAETPSLVKSIALFEQFFSPYPFKKEKYGHAQCNFDGGMEHQTMTFLGKKGF
                     EFYTINHELAHQWFGDMVTCGSWQDIWLNEGFATFGMLMCYENLLPDDYWYKIMLTEM
                     RKVIFTRTQGSVFCTDTTSVPRIFSTSLSYHKGAYLLHMLRWLLGDNDFFQAIRNYLN
                     DPGLKYGFARTRDLKRHLETQSGKDLTRFFADWFNGTGIPDYSVKVEQSSDLKTTITI
                     DQSSYDSNVDFFEMAIPIKFKGIDMDTTVIFNHKFSGQNFEFEPAFKIDSVFFDPDIK
                     ILYRNANISLNQLQSSLKQIKTSENIQIMSNPAKEVLKLKIKSNEINYLQIVGLAGRL
                     KITPPARQEFSLMEIDIRNLQPSVYLLKAGTSDWIETKKFIVTR"
     gene            1995..2726
                     /locus_tag="VI413_07735"
     CDS             1995..2726
                     /locus_tag="VI413_07735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6914550.1"
                     /translation="MDYIIELAGVKKSFKDVHAVKGVDLSIQPGEFVGLLGPNGAGKT
                     TLVEMVEGLQQPDEGVIKIAGKTWKSNESELHQLIGLSLQETKFMDRLTVFETTQLFA
                     SFYKLGTNRVNEVIELVELKEKKKAYVNNLSGGQRQRLALGISLLNKPSILLLDEPTT
                     GLDPHARRGIWTILKNLKEEKNTSLILTTHYMDEAEFLCDRIIIMDQGNILADNTLGN
                     LLAKYNGARNLDELFINMTGRHLYD"
     gene            2783..3883
                     /locus_tag="VI413_07740"
     CDS             2783..3883
                     /locus_tag="VI413_07740"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6914551.1"
                     /translation="MNNQLYRLIIAHLKEIIREPAVLFWGIGFPILMAWGLGIAFSNK
                     KEMSREIAIIEHLGNTTQKSILTDIIEHYPGKQKNDYQLALANKKLGNINLTFHRCSS
                     KEAHALLKKGNVSLIIEIVENKVYYHFDPANAEAQQLYQLVKGLVYNGRGFYSAHQDE
                     IKPLSVAGTRYIDFLIPGLLAMGIMMSSSWGISYTIIERRSKKLLRRMVATPMKKSNL
                     LIALISARFSMNMVEAVLLFIFSWLYFGIQIQGSIAALILIFIAGNIAFAGISVLISS
                     HTSNPEIGNGLINAIVTPMMVVSGIFFSYQHFPEWTIPIIRNLPLTMLADGMRSIFNE
                     GAGILDIWKEALVLSLTGLITFIVGLKIFKWY"
BASE COUNT         1344 a          797 c          782 g         1279 t
ORIGIN      
        1 agaggctgca cagttcaatt accttaaata actatgatct gaagtaccac cgtttttttt
       61 gggtaataaa tccggcacaa cggtttattt cggggtcagt aacttcgtat tttactgcaa
      121 cttccgaacc gatgaactgt attcagtttg aattaaaagc agctctgaca gtcgactcgg
      181 caatttttgc cggaagtaaa gctattgttg accataccga tagcctggtt actatcactt
      241 ttagccattc cgtattacaa ggccagttag attcgctcac tcttttttat catggagttc
      301 ccccttcaaa tggtttcggt tctttcgaga catacgtaca caacggtgca cccagcatgt
      361 ggacactttc cgaaccttac ggagcatcgg attggtggcc atccaagaac gatctgacag
      421 ataaaattga ttcaatcgat gtttatgttg ttatgcccaa agggaatcat gcagccagca
      481 atggtatttt gattagcgag aaaccgtacg ttgccaattc aactattgcg cattggaaac
      541 accgttatcc cattgcctcc tatctcattg ctattgctgt tacaaattat gcacagtatt
      601 ccgatcatta tattaacgga actgactcgc tggaaatact taactacgtt tatccggaag
      661 attcagtgga aataagggct gaaactccca gtctggtaaa atccattgcc ttattcgaac
      721 agtttttctc tccttatcct tttaaaaagg agaaatatgg tcatgcacaa tgtaatttcg
      781 atggaggcat ggaacatcaa accatgactt ttctggggaa aaaaggattt gaattttata
      841 cgataaatca cgagcttgcc catcaatggt ttggagacat ggtaacttgt ggaagttggc
      901 aagacatttg gctaaacgaa ggatttgcca cttttggcat gttaatgtgt tatgaaaatc
      961 tgttaccaga tgattattgg tataaaatta tgttgacaga aatgagaaag gtaatattca
     1021 ccaggactca aggttccgtt ttttgtacag atactacaag tgtacccagg attttcagca
     1081 ccagcttgtc ataccataaa ggcgcttatt tgcttcacat gttgcgttgg ttgttaggcg
     1141 ataatgattt ctttcaggcc attcgtaatt acttgaatga tccggggtta aaatatggtt
     1201 ttgcacgcac cagagatctt aaaagacatt tagaaactca atcaggaaaa gatttgacgc
     1261 gtttcttcgc agattggttc aatggtacgg ggataccgga ttattccgtc aaagtagaac
     1321 aaagttcaga tttaaaaaca acaataacta ttgatcaaag ctcatacgac agcaatgtag
     1381 atttttttga aatggctata cctataaaat ttaaaggtat tgatatggac acaacggtta
     1441 ttttcaatca caaattttca gggcaaaact tcgaatttga acctgcattt aaaatcgaca
     1501 gcgtattttt cgatccggac ataaaaatcc tttatcgtaa tgcaaatata tcgctgaatc
     1561 agcttcaatc gtcactcaaa cagattaaga catctgaaaa catacagatt atgtcaaatc
     1621 cggctaaaga agttcttaaa ctaaaaatca aatccaatga aataaattat ttgcagatag
     1681 ttggtttggc tggaagacta aaaattacgc ctcctgccag gcaggaattc tcacttatgg
     1741 aaattgacat ccggaatctt caacccagtg tatatctgct taaagctggt acttccgact
     1801 ggatcgaaac taaaaaattc attgtaacca gataacaatt gttggtgaca atctggtatc
     1861 acttaacccc cgatttttcc tacaaagatc ttttgaataa caaagattat tttatgccca
     1921 ctctttcata taagaactct gaacaaatca agctaccaag ggttttaatt gatagttaaa
     1981 caatttaaaa tctcatggat tacattatag aacttgccgg agtaaagaaa tcatttaaag
     2041 atgttcatgc cgttaaagga gttgatttat ccattcaacc gggtgagttt gtcggcttgc
     2101 taggaccaaa cggagctgga aaaacaaccc tcgttgaaat ggttgaaggt ttgcaacaac
     2161 cggatgaagg ggtgattaag atagccggta aaacatggaa atcgaatgaa agtgaattac
     2221 atcagttaat cgggctctcg ttgcaggaaa caaaatttat ggaccggctt accgtatttg
     2281 aaaccacgca actttttgcc agtttttata aacttggtac caatagggtt aatgaagtca
     2341 ttgaactggt ggaactgaag gagaaaaaga aagcgtatgt gaataacctc tcgggaggac
     2401 agcgtcagcg gcttgcactg ggaatttcat tgttgaacaa accctctatt ctgttattag
     2461 acgaaccaac tactggactt gacccgcatg cccgccgtgg aatctggaca attttaaaaa
     2521 acctgaaaga agaaaaaaac acttcactta tactgacaac gcattatatg gatgaagccg
     2581 aatttctatg cgacagaatc atcattatgg atcaggggaa tatattggct gataacacac
     2641 tgggaaatct gcttgcaaaa tacaatggtg cccgaaacct cgatgaacta tttatcaata
     2701 tgacaggaag acacctgtat gattaacgct taataaatta caatacataa ttgaatcgaa
     2761 ccgctcaact aatttcgcaa caatgaacaa tcaactatac cgactcatta ttgcccacct
     2821 taaagaaata attcgcgagc ctgccgtact tttttggggc atcggttttc ccattcttat
     2881 ggcttgggga ttaggcattg ctttttcaaa caagaaggaa atgagtcgcg aaattgccat
     2941 catcgagcat ttgggaaata caactcaaaa atcaattctt acagatatta ttgaacatta
     3001 tccgggcaaa caaaaaaatg attatcaact ggcacttgcc aacaaaaaat tgggaaacat
     3061 aaacctgacc ttccaccgct gttcttccaa agaagcgcat gccctactca aaaagggaaa
     3121 tgtaagcctt attattgaaa ttgttgagaa taaggtctat tatcattttg atccggccaa
     3181 tgccgaagcc caacaacttt atcagttagt gaaaggactg gtctacaacg gacgtggatt
     3241 ttattctgct catcaggacg agattaaacc tctctcagta gccggaaccc gctatatcga
     3301 ttttctgatt cccggtttac tggcaatggg aatcatgatg tcatcatcgt ggggaataag
     3361 ttacaccatc atagaacgtc ggtcaaaaaa gcttctccgc agaatggttg ccacacctat
     3421 gaagaaatca aacctgttaa tagcacttat ttctgccaga tttagcatga atatggttga
     3481 agccgttttg ctatttattt tctcgtggct ttattttggc attcagattc agggaagtat
     3541 tgctgcgtta attcttattt tcattgccgg aaacattgct tttgccggaa tttctgtttt
     3601 aatttcttct catacttcga accccgaaat aggaaatggt ttaatcaacg ccatagtaac
     3661 ccccatgatg gttgtttccg gaattttctt tagctaccag catttccccg aatggacaat
     3721 tccaattatc cgaaacttac ctcttactat gctggccgat ggcatgagaa gtatttttaa
     3781 tgaaggtgca ggaattctcg atatatggaa agaagcactt gtactttcat taaccggatt
     3841 gattactttt atcgtcggcc tgaaaatttt caaatggtat tgaaatcaat tttgagtaga
     3901 aataatccaa aattggctaa aaatacaaaa ccgcacgaat gtagtcttaa aaaacatgaa
     3961 tgcatataaa tccattttta ataagttttt gtgtgtgata ttgatctatc ctgaatataa
     4021 ttcttcgtcg aagcaaattt taagcaacct atatcggatg tcagaaattt taattgcatt
     4081 gtcaaatact ttgctttcat ttaaatataa ttcaattttg aaataatttc aattttaaat
     4141 ccgattatta tttaattatg tttgcaaaat aaaatcttta ttatatattt gttcccttga
     4201 aa
//
LOCUS       DATDNM010000454         2375 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1874400, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000454 DATDNM010000000
VERSION     DATDNM010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2375
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1874400"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..731
                     /gene="mreC"
                     /locus_tag="VI413_07745"
     CDS             <1..731
                     /gene="mreC"
                     /locus_tag="VI413_07745"
                     /inference="COORDINATES: protein motif:HMM:NF010532.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEY6914552.1"
                     /translation="SSSNSVVSGMYEWSNSVVEFFKLRAANDNLSEENTALKNQLIKL
                     QNELATLRPEAKDSIHFRIPPEMEYEFISAKVINSSTNKIQNYITLNKGSIDGVKPDM
                     GVISDEGVVGIVKTVSNRFAVVIPVLNPKIEINCKFKRSNYSGPLDWSGEDYRYANLK
                     DIARHVELALGDTLITSGFTNTFPEGIPVGYIEDFKIKESDAYYNIKVKLAVNFRTLS
                     HVKVINYLNYKEQKDLEKTSEEQQ"
     gene            805..1302
                     /gene="mreD"
                     /locus_tag="VI413_07750"
     CDS             805..1302
                     /gene="mreD"
                     /locus_tag="VI413_07750"
                     /inference="COORDINATES: protein motif:HMM:TIGR03426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEY6914553.1"
                     /translation="MPVVLQNIFRFILLVLFQVLVLNNIQFLGYINPYIYILFILALP
                     VRTPRWFALLLAFGIGITIDMFSNTGGMHAFAAVMVAFLRNGTIKLFTAIEEGNNPTP
                     SFHTFGVSAYVKYIVLLVFIHHTTLFLLEAFSVANFWLMLAKILFSSLVTILLILGIQ
                     SLNKK"
     gene            1306..>2375
                     /locus_tag="VI413_07755"
     CDS             1306..>2375
                     /locus_tag="VI413_07755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEY6914554.1"
                     /translation="MINDTLQNRRTVIAIIMSAVIVLYILRLFTIQILDTRYKEGADS
                     NAFLKKTQFPPRGLLYDRKHKLLVYNKPAYDIAMIMREVRDLDTLAFCKALDIDKAYF
                     IRRIEEIKDRRKNPGYSSYTPQLFMSQLGIEDIATIQQSMYKFPGFYIQNRTLREYTY
                     PIAAHVLGSIGEVSQKKIENDEYYKRGDYAGRDGIEYTYEKQLRGEKGVEILLRDAKG
                     RIKGKYENGKEDIAPKAGKNLTLTLDVELQLLAEKLLKGKVGSIVAIEPKTGEILAMA
                     SNPTFNPALLVGRQRSKNYNDLLHDPTKPLMNRATQGQYSPGSSFKTLQALVCQQMGG
                     ITNHTLFACNGPGSSPVKCTHH"
BASE COUNT          730 a          495 c          498 g          652 t
ORIGIN      
        1 tctcatccag caactcggtg gtttcgggta tgtacgaatg gagtaattcg gtggttgaat
       61 ttttcaaact ccgggctgcc aacgacaacc tttcggaaga aaataccgcg ctgaaaaacc
      121 agcttatcaa gcttcagaat gaattggcaa ccctgcgtcc cgaagcgaaa gattccatcc
      181 atttccgcat tccccccgaa atggaatatg agttcatttc tgctaaagta atcaacagtt
      241 ctaccaacaa aatacaaaac tacattacgc tgaacaaggg ttctattgat ggtgtaaaac
      301 cggatatggg cgttatcagc gacgaaggag ttgtaggcat tgtaaaaaca gtttcgaacc
      361 ggtttgcagt cgtaattccg gtattgaacc ccaaaattga aattaactgc aaattcaaac
      421 gcagcaatta cagcggtccg ctggattggt cgggcgagga ttaccggtac gccaacctga
      481 aagatattgc ccgacacgtt gaacttgcat tgggcgacac attgataaca agcggattca
      541 ccaacacatt ccccgaagga attccggtgg gatatatcga agattttaag atcaaggaaa
      601 gtgatgccta ctataacatt aaggtgaaac tggcggtgaa tttccggacg ctttcgcatg
      661 ttaaagttat taattacctg aactacaagg aacaaaaaga cctggaaaaa acatcagaag
      721 aacaacaata acaattcata attgataatt cacaatgcat aattttgaat tatcaatcat
      781 gaattatcaa ttatgaatta agacatgccc gtagtacttc aaaacatatt ccgctttatt
      841 ttactggtgc tttttcaggt gctggtgctg aataatattc agtttttggg gtacataaat
      901 ccgtacattt acattttgtt tatactggct ttgcctgttc gcacgccacg gtggtttgcg
      961 cttttgctgg ctttcggcat tggaattacc atagatatgt tctcaaatac cggtggtatg
     1021 catgcttttg ccgcggtaat ggttgctttt ttgcgcaacg gaaccatcaa attgttcacc
     1081 gccattgaag aaggaaataa ccctactcca tcgtttcata cttttggtgt aagtgcttac
     1141 gtgaaatata ttgtattgct ggtatttatc catcatacta ccttgttttt actcgaagca
     1201 ttttcagtcg ctaacttttg gttaatgctg gcaaaaattc tgttcagctc gctggttact
     1261 attttactta ttctgggtat ccaatcgctt aataaaaagt aagaaatgat taacgatacg
     1321 cttcaaaaca gaagaacggt gattgccata atcatgtcgg ctgttattgt tttgtatata
     1381 ttgcgattgt ttaccattca aattcttgat acaagatata aagaaggagc agatagtaat
     1441 gcctttctga agaaaactca atttcctccg cgcggtttgc tctacgaccg caaacacaaa
     1501 ctactggttt ataacaaacc ggcttacgat atagccatga ttatgcgcga agtgcgcgac
     1561 ctggatacgc tggcattttg taaagcgctc gacattgata aagcctattt cattagacgc
     1621 attgaagaaa ttaaagaccg caggaaaaat ccgggttatt cgtcgtacac gcctcaactt
     1681 ttcatgagcc aactgggcat cgaagacatt gctaccatcc agcaatctat gtataaattt
     1741 cctggatttt atattcagaa ccgtacattg cgtgaatata cctatcctat tgcagcgcat
     1801 gtattgggaa gtattggcga agtatcgcaa aaaaagattg aaaacgatga atattacaaa
     1861 cgtggcgatt atgccggacg cgatggcata gaatacacct acgaaaaaca attgcgggga
     1921 gaaaaaggag tagaaatttt gcttcgcgac gccaaaggcc gcataaaagg gaaatacgaa
     1981 aacgggaaag aagatattgc gccaaaagcc ggaaaaaatc tgacactgac acttgatgtg
     2041 gaactgcaat tgctggccga aaaactgctg aaaggaaaag ttggcagcat tgtggctatt
     2101 gagcctaaaa ccggtgaaat actggctatg gcttctaatc ctacatttaa ccccgcatta
     2161 ttggttggtc gccaacgttc aaaaaattac aacgacctgc tgcatgaccc taccaaacca
     2221 ttgatgaacc gggccactca ggggcagtat tcacccggat catcatttaa aacgcttcag
     2281 gcactcgttt gccagcaaat gggtggtata accaatcaca cgctgtttgc ctgtaacggt
     2341 ccggggtcgt cgccggtgaa gtgtacacac cacca
//
LOCUS       DATDNM010000455         4839 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1020378, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000455 DATDNM010000000
VERSION     DATDNM010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4839
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1020378"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1775)
                     /locus_tag="VI413_07760"
     CDS             complement(<1..1775)
                     /locus_tag="VI413_07760"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6914555.1"
                     /translation="MKKWTPILVCILLAFTSCVSELDKYYATPDWLKGNSWEVLEKKE
                     NFKLFLSAVERTSYKDLVQGKGIITVMAPTDSAFQVYLTKNSYASVSAIPDSVVTKLV
                     GFHLLFYAFDKDKFIDYKPNGVESTNELKGMYYKFRTKSRDNISVEIDPAFNNAPRKV
                     MHKDRFLPVFSFNLFTSYGLNAKSNYEFFYPNSTWTGETGFNVSNASVKDYAIVTDNG
                     YVYAINQVIEPLGTIYNELKAESGYGIFKNAYDRFVTFEYDATSTADYGKGDSLFIMY
                     HGSQLPPIASEWPVFSYTQLDILSYGAYNLFAPDNAAMQAFYDKYWRPYYNNKGMDSV
                     KFEPLLALLQNHIYSGTILFPEQIESGKIKSPYGSTIQFDRSSAKMKHICVNGALYGL
                     DHVIVPPMFEKVTAPMYCNPKYNMILDMMKNSSYVQTLITDAAKFSVFYPSDEMILTY
                     TNFDGKLMYYVNRNDKKYGAQDLQIDGDDGIQKSMTVNQKKTFAGGHIATEMISNRGT
                     EYVYRTLTPYNYLYINGNKVYSSALFNLGVDAKVPTFTKIEGDWSNGDAYALSGETAS
                     ALVPESNQFKNLTSTSSPADLKNMIA"
     gene            complement(1852..3957)
                     /locus_tag="VI413_07765"
     CDS             complement(1852..3957)
                     /locus_tag="VI413_07765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005926567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914556.1"
                     /translation="MKKTLYAVIALLLLACSTVKSTSIDRKALVNRNNPHISSFDSLA
                     SLSVGNGEFAFTVDATGLQTFPQKYTLGVPLGTQSQWGWHSFANPNNYLHEETLKNYN
                     FRGKEEPYSTQFNEPGRQKEAADWFRVNPHRLHLGIIGFELSYPSDYSNITDIQQELK
                     LWNGKIVSKFNLSGKPVSVETSCHPAKDMVSAHIISTGHTGIKFHFPYPTGGHTDDAC
                     NWENNDKHSTTIISQTENSALLERKIDETTYYVSIQWEGKASIIEKEKNYFVLQPSSD
                     DFSFTTYFTSVKPTENSQPTAAETQVAANNYWEAFWTKGGAIDFSKCKDKRAAELERR
                     VVLSQYLLAIQCSGTVPPQETGLTYNSWFGKFHLEMIWWHEAQFALWGRADLLEKTLD
                     WYNKAYPVAKEIAQRQGFQGARWMKMTDPSGIEAPSKVGSFLIWQQPHFIYLAELVYR
                     SHPSQAVLEKYAKLIDETAKFMFSFATYDQLEGRYVLKGAIPAQETLRASETENPPFE
                     LSYWHFAMSTAQKWRERMGQKRNLQWDEMIDKLSPLAYQDGLYLAAETATDTYKDIRF
                     TSDHMAVLGALGILPKCPLVRKDYMQNTLNWIWDNWNWGKTWGWDYPMTAMNAARLGD
                     GKKAVGALLMDKRTNTYLPNGHNYQDSRLRIYLPGNGGLLTAISMMCAGWDGNKTKNP
                     GFPKDGNWNVKWEGLLPMP"
     gene            complement(4301..>4839)
                     /locus_tag="VI413_07770"
     CDS             complement(4301..>4839)
                     /locus_tag="VI413_07770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005652799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY6914557.1"
                     /translation="NSFISKGNQILEVGFNEELVNLFTRAIEVAEVDKISSQQYLSGI
                     VLHILGLVLSVSQNKIFEVGDVVQKIEQAKIIMNENIYKNIDPEELAEKLNTSYSWFR
                     KVFKDYTGYAPAKYFQELKIRKAKQLLVGTSHTVKEISYMLDYNSTEHFFSLFKKMTG
                     YTPLEYRCFGRKTDSSED"
BASE COUNT         1328 a          933 c          956 g         1622 t
ORIGIN      
        1 gcaatcatgt ttttcaaatc tgcagggctg cttgtggatg tcaggttctt gaactgattg
       61 gattccggaa ctaatgcaga agctgtttcg cccgaaagtg cgtaggcatc tccgttgctc
      121 cagtcacctt ctatttttgt aaatgtcgga acttttgcat caactcctaa attgaacaag
      181 gcagaagaat atactttatt cccattaatg tacaggtagt tataaggtgt aagcgtccgg
      241 taaacatatt cggttcctct gttcgaaatc atttcggtag caatatggcc tcctgcaaaa
      301 gttttctttt gatttaccgt cattgatttt tgaattccat catcaccgtc aatttgtaaa
      361 tcctgagctc cgtatttctt atcatttcta tttacataat acatgagctt accgtcaaaa
      421 ttggtgtaag tcaggatcat ttcatctgaa ggatagaaaa cgctgaattt tgcggcgtct
      481 gttataagtg tctgtacgta agatgagttt ttcatcatgt ccagaatcat attgtatttt
      541 ggattacaat acatgggtgc ggtaactttc tcaaacatgg gtggaacaat aacgtgatcc
      601 agaccatata aagctccgtt aacgcagatg tgtttcattt tggccgaaga acggtcaaat
      661 tgaatagttg aaccatatgg agattttatt tttccggatt caatttgttc cggaaataga
      721 attgttccac tgtagatgtg attctgaagc agtgcaagca aaggttcaaa tttcacgcta
      781 tccattcctt tattattgta atatggtctc cagtatttat cataaaaggc ttgcatagca
      841 gcattgtctg gtgcaaacag gttgtaagct ccatatgata aaatatcgag ctgggtataa
      901 ctaaaaaccg gccattccga agcaatcgga ggcagttggc ttccgtgata catgatgaaa
      961 agtgaatcgc ctttgccata gtcggctgtt gatgtagcat cgtattcaaa agttacaaat
     1021 ctatcgtatg cattcttgaa aataccgtac ccactttcag cttttaattc attataaata
     1081 gttcccagtg gttcaattac ctgattaatt gcgtaaacgt aaccgttatc cgtaactatg
     1141 gcatagtctt ttaccgaagc atttgataca ttaaatccgg tttcaccggt ccatgtagaa
     1201 ttcggataga agaattcgta gttcgatttt gcatttaaac catagctggt gaataagttg
     1261 aatgaaaaca ccggaagaaa acggtcttta tgcataacct tgcggggtgc attgttaaaa
     1321 gcggggtcaa tctcaacgga aatattatcg cggctttttg tcctgaattt ataatacatg
     1381 ccttttaatt cgttggtaga ctcaactccg tttggtttgt aatctataaa tttatcttta
     1441 tcgaaagcgt aaaataaaag atgaaaacca actaacttgg taacaaccga gtccggaatt
     1501 gctgatacag aggcatagct gttttttgtc aggtatacct gaaatgctga atcggtaggg
     1561 gccataacgg taataatacc tttgccctgt actaaatctt tgtacgaagt tcgttcaacg
     1621 gccgataaaa aaagtttgaa attttctttt ttctcaagta cttcccacga gttccctttc
     1681 aaccagtcgg gagttgcata gtatttatcc aactcactca cacatgaagt gaaagccaaa
     1741 aggatacaca ctaaaattgg agtccatttt ttcatgattt ttcccatttg ttattttagt
     1801 aattagattt ttatattatt ttttcttctc aatcattcta cgtccgcccc attacggcat
     1861 tggaagcagt ccttcccatt ttacattcca gtttccatct tttgggaatc ctggattttt
     1921 tgttttattt ccatcccaac cagcacacat catcgaaatg gctgtcaaca atccaccgtt
     1981 tccgggtaaa taaatccgca aacggctgtc ctggtaatta tgcccgtttg gtaaatatgt
     2041 atttgtgcgt ttatccataa gcaatgctcc aaccgctttt ttcccatctc caagccgggc
     2101 tgcattcata gctgtcattg gataatccca accccaggtt tttccccagt tccagttatc
     2161 ccaaatccag ttcaacgtgt tttgcatgta atctttacgt accaaagggc atttaggtaa
     2221 aatgcccaag gcgcctaaaa cagccatgtg gtcggaggta aaccgaatat ctttatacgt
     2281 gtcggtggca gtttcggcag caaggtacag tccatcctga taagccaatg gagataattt
     2341 atcaatcatt tcgtcccatt gcaggtttcg tttttggccc attcgttcgc gccatttttg
     2401 ggctgtactc atggcaaaat gccagtatga aagttcaaat ggtggattct cggtttcaga
     2461 agcacgcaag gtttcctggg ccggaatagc tcctttgagc acataacgcc cttccagctg
     2521 gtcgtaagtg gcaaacgaaa acatgaattt ggcagtttcg tcaattagct ttgcatattt
     2581 ttcgagcact gcctgagaag gatgacttct gtaaaccagt tctgccaaat agataaaatg
     2641 gggttgttgc caaatcagga aagagccaac tttcgaagga gcttcaatgc ccgatgggtc
     2701 agtcattttc atccaacggg caccctggaa tccctgacgt tgagcaattt cttttgcaac
     2761 agggtatgct ttgttatacc agtctaatgt tttttctagc agatcggctc tgccccaaag
     2821 tgcgaattgt gcttcgtgcc accagatcat ttcaaggtga aattttccaa accatgaatt
     2881 ataagtcagc cctgtttctt gtggtgggac ggttcctgaa cattgaatgg ccagtaaata
     2941 ttgtgataaa accacgcggc gttcgagttc cgctgcacgc ttatctttgc attttgaaaa
     3001 atcgatagcc ccaccttttg tccagaatgc ctcccagtag ttgtttgctg ctacttgtgt
     3061 ttctgcagcg gttggttgtg agttttcagt tggtttaaca gatgtaaagt atgtagtaaa
     3121 tgaaaaatca tccgaggacg gttgaagcac aaaataattt ttttcttttt caattatact
     3181 ggcttttcct tcccattgga ttgaaacata gtatgttgtt tcgtcaattt tgcgttcaag
     3241 aagagccgaa ttctctgtct gactgataat tgttgtactg tgtttatcat tgttttccca
     3301 gttacaagcg tcatcagtat gacctccggt aggatagggg aaatggaatt taattccggt
     3361 atgtccagtc gaaattatgt gagcgctcac catatctttt gccgggtggc agcttgtttc
     3421 aactgaaacg ggtttgccgg ataaattgaa tttgctgact attttgccat tccagagctt
     3481 tagttcttgt tggatatcag tgatgttact gtagtcggaa ggatatgaaa gctcaaatcc
     3541 aataataccc aaatgaagtc gatgtggatt tacgcgaaac caatctgcag cttccttttg
     3601 ccttcctggt tcgttgaatt gggtagagta tggttcttct tttcctctga agttataatt
     3661 tttgagcgtt tcttcgtgga ggtaattgtt gggattggca aaactgtgcc agccccactg
     3721 gctttgggtg ccgagcggaa ctccaagggt gtatttctga gggaatgttt gcaatccggt
     3781 tgcatcaacg gtaaatgcga attctccgtt tccaactgat aatgaggcca atgagtcaaa
     3841 ggagcttata tgcggattat tcctgtttac taatgctttg cggtcaatgg atgtcgattt
     3901 tacagtgctg caagctaaca aaagaagcgc aataacggca tagagagttt ttttcatagc
     3961 aatttatctt acctgtgatt taaagtctta caaatttaag aagttgatta cgtcattcgt
     4021 gtatatccgt tgacattaat cgtatgtatt ttgattgtct gtttaatata agtgtgaaaa
     4081 tagagcatca aaatatttat attttacaaa gatatattaa gcttattgct gtatatttat
     4141 tccttttgat tgaaaggctc ttgattttga ttttaacgct gtgtgtttta attttatcgt
     4201 caaaaattat ccataaaaaa gacagagaat tgaaaaatag tttcaactct ctgtctttat
     4261 gatttttttt ttaatatttc cttgtgagaa atcttctgtg ttagtcttcg gaactatcag
     4321 ttttccttcc aaaacaacga tattcaagtg gcgtatagcc agtcattttc ttaaacaatg
     4381 aaaagaaatg ttcggttgaa ttataatcga gcatatagga aatttctttt actgtatgcg
     4441 aagtccccac aagcaattgc ttggctttgc ggattttcaa ttcctgaaaa tatttggcgg
     4501 gagcataacc ggtataatct ttaaaaacct ttctgaacca cgaatagctg gtattcagct
     4561 tttctgccag ctcttcaggg tcgatgtttt tgtatatatt ttcattcatt atgatttttg
     4621 cctgttcaat tttctgaaca acatcgccaa cttcaaaaat tttattttgt gaaaccgata
     4681 atacgagacc caaaatgtgc aaaacaatac ccgatagata ttgttgggaa gatattttgt
     4741 ctacctcggc tacttcaatt gcgcgggtaa ataaatttac taattcctcg ttgaacccaa
     4801 cttccaatat ctgattgcct tttgaaatga atgaatttt
//
LOCUS       DATDNM010000456         6230 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_166438, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000456 DATDNM010000000
VERSION     DATDNM010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6230
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166438"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..542)
                     /locus_tag="VI413_07775"
     CDS             complement(<1..542)
                     /locus_tag="VI413_07775"
                     /EC_number="1.1.1.58"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009860768.1"
                     /note="catalyzes the formation of D-tagaturonate from
                     D-altronate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagaturonate reductase"
                     /protein_id="HEY6914558.1"
                     /translation="MKKLNRENVSAKRYPERIIQFGEGNFLRAFVDWIVWNMNEKADF
                     NSSIVIVQPIENGMIDMLNDQDCLYHLNLQGLDKGTKVNSLELMDVISRGLNPYTQFE
                     EYLKLAENPEMRFVVSNTTEAGIAFDPACKLNDAPAKSYPGKLTQLLFHRFKTFNGVA
                     DKGLLVFPCELIFHNGTELK"
     gene            1094..2416
                     /locus_tag="VI413_07780"
     CDS             1094..2416
                     /locus_tag="VI413_07780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEY6914559.1"
                     /translation="MTSNKNIFNITYPILLTLIAQNLINVTNTAFLGRVGEVELGASA
                     IGGVFYFAIFMIGFGFSQGAQILIGRRNGESNFSQIGPIFNNALIFNFLLSILIFGLS
                     VKGVPLIMKYAVSSPQVYDATIAYLDWRIYGYFFAFINAIFRAFYVGITQTRILTTSA
                     VLMAITNILFDYLLIFGHWGFPQLGIEGAGISSVIAEVVTLIYVILYTFWRTDMKLYG
                     LFQFRKVELKIVLQILELSIFIMFQYFISISTWFMFFIFIEHMGERPLAVSNIGRSMY
                     ILLMIPASALATTVNTLVSNLIGAGRKEEVLPFINKVARISVLVVLPFVILTVVFPEF
                     FAHIYTDDEGLIKACIPVMRIVSLANLLFAMSFIVFNGVSGTGNTRTAFAIEFLTLFF
                     YISYVYYTAIIHPSSAAVVWLSEFVYWTIIGSLGYLYLWKGNWRMKEI"
     gene            2546..3919
                     /gene="radA"
                     /locus_tag="VI413_07785"
     CDS             2546..3919
                     /gene="radA"
                     /locus_tag="VI413_07785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEY6914560.1"
                     /translation="MAKTKSVYVCQNCGVDSPKWIGKCPSCGEWNSYVEEVISKDSSA
                     PKFQMGGVELVKQKPILITEVETSEESRFDTSSNELNRVLGGGLVPGSLVLIGGEPGI
                     GKSTLVLQVVLNLKGKKTLYISGEESVKQLKLRAERLKFENPECYIVSETSLEQIFVH
                     IQNIQPDVVIVDSIQTVSTEMIESSPGSVSQVRECAASLLKFCKTTGTPVLLIGHINK
                     EGSIAGPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTSEMGIYEMQQNGLREVS
                     NPSELLLSQNHEGLSGVAIASAIEGVRPFLIETQALVSSAAYGTPQRSSTGFDLRRLN
                     MLLAVLEKRAGFKIAQKDVFLNIAGGIKVNDPAIDLAVISAILSSNVDIAIEKHVCVA
                     GEVGLSGEIRPINRIEQRILEAEKLGFKKMIMPEYNLKSLNLSKLNIELVQVKKVEEA
                     FRLLFKR"
     gene            3951..4688
                     /locus_tag="VI413_07790"
     CDS             3951..4688
                     /locus_tag="VI413_07790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914561.1"
                     /translation="MSKSYTNGIIAFLDILGFSNYIEKTKEIDEIQVFFNFVEKICYL
                     YNTSDIHNIKIAFFSDSFVLTTNEKTKDSLSSIFFACHMINIQLYEATKLFTRGAICS
                     GDYYHQNNITFGPGIIKAYREQESNAKFIRLIVERSLVHMIELPISSFIESDEEYVYY
                     CNYFLLETFERITSASKGNIDNLNFELAKPILRKNRQIINDNLAIYRDTNVYEKYEWL
                     ITPFNSCCKHFASFNNSDEEFLNLQIL"
     gene            4720..5502
                     /locus_tag="VI413_07795"
     CDS             4720..5502
                     /locus_tag="VI413_07795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA family kinase"
                     /protein_id="HEY6914562.1"
                     /translation="MTLRTVNVTRYITPLREGGSLPALAEADDDFKYVVKFRGAGHGS
                     KALISELIGGLVAHRLKLRVPELVFIQLDEAFGQTEGDEEIQDLLQNSRGLNLGLHFL
                     SGALTYDPVTTKVDGHLASQIVWMDAFLTNVDRTVRNTNMLMWHKELWLIDHGATLYF
                     HHTWINWEKSALSPFPLIKDHVLLPFADKLEEVNAEIKQVLTPEVIRDIVNMIPDEWA
                     ANSEQGLSVYEIREVYYQFLLRRLENSDNFLNEALNARKTLI"
     gene            5480..5863
                     /locus_tag="VI413_07800"
     CDS             5480..5863
                     /locus_tag="VI413_07800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016268007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3037 domain-containing protein"
                     /protein_id="HEY6914563.1"
                     /translation="MQGKHLFEYAVIRVLPKVEREEFINVGIILFSKRAKYIRMKYTI
                     NAERLSVFSSELDVNLLSETLHSFERICNGDKAAGTIAQFDIPERFRWLTAVRSSCIQ
                     TSRPHPGYSENLDATVEKLFEELVL"
     gene            complement(5952..>6230)
                     /locus_tag="VI413_07805"
     CDS             complement(5952..>6230)
                     /locus_tag="VI413_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012056016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEY6914564.1"
                     /translation="RVDEVNKMAELGTMIAHIDGGVPNLKLELPKLNEFYLGQMIYFF
                     EKACGISGYLLGVNAFDQPGVEAYKKNMFALLEKPGFEAETKAIKARL"
BASE COUNT         1826 a         1098 c         1285 g         2021 t
ORIGIN      
        1 tttttaagct cagtaccgtt gtggaaaatc aattcgcaag ggaaaaccag caatccttta
       61 tcggctacac cattgaacgt tttgaaacgg tgaaaaagca gctgggtgag ttttcccgga
      121 tatgatttgg caggtgcatc atttagtttg caagcagggt caaatgcaat accggcttca
      181 gtagtgttgg aaacgacaaa acgcatttca ggattttcag ctagtttcag gtattcttca
      241 aactgagtat atggattcaa cccgcggctg ataacatcca ttaattcaag actgtttact
      301 ttagtacctt tatcaagtcc ctgtaaattc aaatggtaca aacagtcctg atcgttcagc
      361 atgtcaatca ttccgttttc aataggctga acaattacaa tgctgctgtt gaaatcagct
      421 ttttcgttca tgttccacac aatccaatct acgaaagcac gtagaaagtt accttcacca
      481 aactggataa ttctctcagg gtagcgcttg gcgctcacat tttctctgtt taattttttc
      541 atttatgttg atttgtttat attttgtcca atagttagtt ggaatgttga aaattcaaca
      601 ataacatttt gattcttcta ttgaaagaga atcaatttat tcgcaataag tcaattagat
      661 attgtttgag gaagatggat gttttccatg ttcgaaattt gataaacagt gcgttatacc
      721 aaactatttg aagtataaga taaggtgttt ttaaaagaag ggcaaaaata caaaaatata
      781 acttgtttta cagtggaaaa tttgatataa tcagtgtaat aattgataga gtttgagagt
      841 ttatttggga aaatctaata aatatggtta accgttcatg atggcggaaa attcaaaagt
      901 gttttataaa taatgacaat ttcaatgctt aaatttatct atctttacac tctcaaatta
      961 atttaccata aattgaaaat atactgactc aaacgagttg aatttcaata aataatcaga
     1021 ttgttttcga acatgttcaa ctttatgaac gtttgagtat tcaattgatt attccaaagt
     1081 tgcaactgat acaatgactt ccaacaaaaa tattttcaac ataacctatc cgattttact
     1141 cacgctcatt gcgcagaatc ttattaatgt tactaatact gcttttttgg ggcgtgttgg
     1201 tgaagtggag ttaggagcat cggccattgg tggggttttc tattttgcca tttttatgat
     1261 cggttttgga tttagccagg gtgcccaaat ccttattgga aggcgaaatg gcgaaagtaa
     1321 tttctctcaa ataggtccca tattcaataa tgcgcttatt ttcaacttcc tgttgagcat
     1381 acttattttc ggactttctg taaaaggcgt tccgcttatc atgaaatatg ctgtaagctc
     1441 ccctcaggtc tatgatgcaa ctattgcata cttggactgg cgtatttacg gttatttttt
     1501 tgcatttatt aatgctattt tcagggcttt ttatgtgggg attacgcaaa cgcgcattct
     1561 caccacttcg gctgttttaa tggctattac caacatactt ttcgattatc ttttgatttt
     1621 tggccattgg ggatttcctc aacttggcat tgaaggtgcc ggaatttctt ccgttattgc
     1681 tgaagttgtt acgcttattt acgtgatttt gtacacgttt tggcgtaccg atatgaaact
     1741 ctacggcctg tttcaattcc ggaaagttga attgaaaatt gttttgcaga tccttgaatt
     1801 gtctattttt attatgttcc agtattttat ttccatttcc acctggttca tgttttttat
     1861 atttatcgaa cacatgggcg aacgtccgct ggcagtttcg aacattggaa ggagcatgta
     1921 tattttgctc atgattccgg cttcggctct ggcaactacg gtcaatacgc tggttagtaa
     1981 tttgatcggt gccggacgga aagaagaagt gttgcctttt atcaataagg tggcccggat
     2041 atccgtttta gtagtattgc catttgttat cttgaccgta gtttttcccg agttctttgc
     2101 gcatatttac accgatgacg aaggactaat caaagcgtgt attccggtta tgcgaatcgt
     2161 gtcgcttgcc aatttacttt ttgccatgag tttcattgta ttcaatggcg tttcgggtac
     2221 cggtaatact cgtaccgcct tcgccattga attcctgacg ctgttttttt atatcagcta
     2281 cgtttactac acggccataa ttcatccaag ttcggctgca gtagtttggt tgtcggaatt
     2341 tgtttattgg actataattg gttctctggg ctatctgtat ctgtggaaag gcaattggag
     2401 aatgaaggaa atttgatgat gtgatgatgt gctgatatga tgatttgctg gcgaatttga
     2461 ctaattggtt caatggctta ttttttatac ttttgttttc cttaattatc atatcagcac
     2521 attctcacat taactaatta ttaaaatggc caaaaccaaa tcagtatacg tctgtcaaaa
     2581 ttgtggtgtc gattctccta aatggatcgg gaaatgccca tcgtgcggtg aatggaactc
     2641 atacgtagaa gaagttatca gcaaagatag cagcgcacca aaatttcaaa tgggaggcgt
     2701 tgaacttgtc aaacaaaaac ccatactgat tacagaagtt gaaaccagcg aagaaagccg
     2761 gttcgacacc agttcgaacg aattaaaccg cgtattgggt ggtggattag ttccgggttc
     2821 tttggtgttg attggtggtg aacccggcat tggaaaatca acgttggtgt tacaggtggt
     2881 tctaaatctg aaaggaaaga aaacacttta tatttcgggc gaagaaagcg tgaagcagct
     2941 gaaactgcgt gccgaacgcc tgaaatttga aaatccggaa tgttatatcg tcagcgaaac
     3001 ttctctcgag caaatttttg ttcatataca aaatatccag cccgatgtgg tgattgttga
     3061 ctccattcag acggtttcta ccgaaatgat cgaatcgtcg cccggctcgg tgtcgcaagt
     3121 gcgtgaatgt gccgccagct tgcttaaatt ctgtaaaaca accggcactc cggtgctttt
     3181 gattggccat ataaacaaag aaggtagcat tgcaggcccg aaggtattag agcatattgt
     3241 ggacacagtg ctacaatttg aaggcgacca gcattatatg taccgcattt tgcgaagcat
     3301 aaaaaatcgc ttcggaagca cttccgaaat gggcatttac gaaatgcagc aaaatggttt
     3361 gcgcgaagtt agcaatcctt cggaattgtt gctttcgcaa aatcacgaag gactgagcgg
     3421 cgtggccatt gcttcggcca ttgaaggtgt gcggccgttt ctgatagaaa cgcaagcttt
     3481 ggtcagttct gctgcttatg gcacgccaca acgatccagt acaggttttg accttcgccg
     3541 gttgaatatg ttgttggctg tactggaaaa acgtgccggt ttcaaaattg cccaaaaaga
     3601 cgtgttcctc aatatagcag gcggtataaa agtgaacgat ccggctattg atttggcggt
     3661 tatctccgcc attttatcgt ctaacgtgga cattgctatt gaaaaacatg tgtgtgttgc
     3721 cggtgaagtg ggactttcag gtgaaatccg accaattaac cgtatcgaac agcgtatttt
     3781 ggaagcagaa aaattgggct tcaaaaaaat gattatgccc gaatataacc tcaaaagcct
     3841 taacctgagc aagctgaata ttgaattagt tcaggttaaa aaggtggaag aggcgttccg
     3901 gttgttgttt aaaagataaa atatgccaga ttaaactata aataatacat atgagtaaat
     3961 catatacaaa tggaataata gcttttctcg atatacttgg ttttagtaat tatatagaaa
     4021 aaactaaaga aattgatgaa attcaagttt tttttaattt tgttgagaaa atttgttatt
     4081 tgtataatac atcagatatt cataacataa aaatcgcttt tttctcagat agttttgttt
     4141 tgactactaa tgaaaaaaca aaagattcat taagctcgat tttttttgct tgtcatatga
     4201 ttaatataca attgtatgaa gcaactaaac tatttactcg aggggctatt tgtagtggtg
     4261 actattacca tcaaaacaat attactttcg gtcctgggat aataaaagca tatagagaac
     4321 aagagagtaa tgcaaaattt ataaggctaa ttgtagaaag atcgttagtc catatgattg
     4381 aacttccgat aagttcattt attgaaagcg atgaagagta tgtatactat tgcaactact
     4441 ttttactcga aacatttgaa agaataacga gtgcttctaa gggtaatatt gataatttaa
     4501 attttgaatt agcaaaacca attttgagga aaaataggca gatcattaat gataatttag
     4561 ctatctatag agatactaat gtttacgaaa aatatgaatg gttgattact ccatttaata
     4621 gttgttgtaa acattttgca tcattcaata actcagatga agaatttctt aaccttcaaa
     4681 tactttaaat tttctacata ttgaaatttt ttttataaaa tgaccctacg taccgtaaat
     4741 gtaacccgct atatcactcc tttgcgcgaa ggaggatcgt tgccggcatt agctgaagct
     4801 gatgacgact tcaagtatgt tgtcaagttc cggggagcgg ggcatggcag caaagcgctg
     4861 atttcagaat tgattggtgg actggtggct catcgtctca aacttcgtgt gccggaactg
     4921 gtatttattc aactcgatga agctttcggg caaaccgaag gcgacgagga aattcaggat
     4981 ttgctgcaaa atagccgtgg attgaacctt ggtttgcatt ttctgtcggg tgctttgact
     5041 tacgatccgg ttacgactaa agttgatgga catttggctt cgcaaattgt gtggatggat
     5101 gcttttctga ccaacgttga ccgcacagtg cgcaacacaa atatgctgat gtggcacaag
     5161 gaattgtggc tgattgacca tggcgcaaca ctttattttc atcatacgtg gataaactgg
     5221 gaaaagtctg cattgagtcc gtttccgtta ataaaagacc acgtgttact gccttttgca
     5281 gataagctcg aagaagtaaa tgctgagatt aaacaagtgc ttactcccga agttattcgc
     5341 gatattgtaa atatgattcc ggatgagtgg gctgctaatt ctgaacaagg ccttagtgtt
     5401 tatgaaatac gtgaggtgta ttaccaattt ttattacgaa gactggaaaa ttctgataac
     5461 tttttaaatg aagctctcaa tgcaaggaaa acacttattt gaatacgccg tgattcgtgt
     5521 tttacctaag gttgagcgcg aagaatttat aaatgtgggc attattttgt tctcaaaacg
     5581 ggcaaaatat atccgcatga aatataccat taatgcagaa cgactcagcg ttttttccag
     5641 tgagttggat gtcaatctgc ttagtgaaac tttacattct tttgaacgta tatgcaatgg
     5701 ggataaggcg gccggaacaa ttgcacaatt tgatattcct gaacgtttcc ggtggcttac
     5761 ggccgtgcgc agctcctgca ttcagacttc ccgtccgcat cccggatatt ccgaaaatct
     5821 ggatgcaacg gttgagaaat tatttgagga attagtatta taaaatagaa aagccattcc
     5881 aaaataggaa tggcttttct attttttttg tttgacagtc tatgaacaat aaactacaaa
     5941 ctataaacta attacagtct ggctttaatc gcttttgttt cagcttcgaa acctggtttt
     6001 tcgagcaaag cgaacatgtt tttcttgtaa gcttcaacgc ccggctggtc gaatgcgttt
     6061 acgcccagca gataaccgct gataccgcag gctttttcga agaaataaat catttgtccc
     6121 aagtagaact cgttcaattt aggaagttcc agtttcaggt ttggcacacc accgtcaata
     6181 tgggcaatca tagtgccaag ttcagccatt ttgtttactt catctacacg
//
LOCUS       DATDNM010000457         2193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_58424, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000457 DATDNM010000000
VERSION     DATDNM010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58424"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            371..1591
                     /locus_tag="VI413_07810"
     CDS             371..1591
                     /locus_tag="VI413_07810"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY6914565.1"
                     /translation="MRMYTEVLIALLVMIAIPDIYFYLKLKDRNAKPIYIVLHLIPPL
                     FFTVLFLYMKFGLETLQNFRIVADIMWLYFFFMLIYIPKVIHIIFYFLDYVYIKIFKH
                     DNVYFDITRIIVSIISVIILLVGAYITPRNFEVVTVQVPINNLPPDFNGYKIVLISDI
                     HLGSWNKKFEKLKPVIKLVNEQNPDIIIFAGDMVNNFASETQGWKPYFLEMKAKSGEY
                     AVLGNHDYGDYTEWNTYNDRLENRRQIKQFIRDCGFRLLLNENVYLKKGRDSLLLVGV
                     ENWGKSTRFRYSDLNKALTGSTPNTPKILISHDPTQFDAEIAGKKDIGLTLSGHTHAA
                     QLGIKIGKHLFSPASLVFKYWAGLYNVNEQYIYVNRGIGYIGLPMHIGVRPEITVITL
                     KRKQLNINAKAQRN"
     gene            complement(1499..>2193)
                     /locus_tag="VI413_07815"
     CDS             complement(1499..>2193)
                     /locus_tag="VI413_07815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914566.1"
                     /translation="YIVGGWNGWKTFREMKRIDSTHFTTTILSNKLFKYNYFAGQGWG
                     YMELGANKIVRADRSYSTDDVVLDWAAVYDKAVPDADITYSVTVPEGTNSCYIAGSWN
                     RWLFLEMEKVDSRHFAITLKSNKALKYLYLSGPDWNCIEVSPGKNEVAVRTYSDNDLV
                     LGWKSVWKKMNRCFRLAELLILNKIIYKGTSKFEVCFNLVLVSLCLCVYIKLFTLKSY
                     NCNFWPDTDMHG"
BASE COUNT          730 a          444 c          344 g          675 t
ORIGIN      
        1 aaagctaaca ggattgaatt tcaataagca gaaaaccaat aacaataagc taaaccggaa
       61 aaatggtcag taaatactac ccactgctct ttgatttcta actaaaaaca acgatattta
      121 cgtctccaat agttcagttt cataaaccag ataatttatt ttataaaaaa tcattatttc
      181 ggattaactt tatttgattc caaaacgttt ttacctaaac gagtggattt aatgttatac
      241 ttaaaaatca actcatttat tctactgaat atatctcaga atatccagag actcataatc
      301 tgattggctt gatttcaggg aaaacagatc aatcgtaatt ctaactcatg ttaactttac
      361 acctattgcc atgagaatgt acacagaagt tttgatagct ttattggtta tgattgctat
      421 ccccgacatt tatttctatt taaaactaaa agaccggaat gctaagccta tttatatagt
      481 tttacattta attcctccat tatttttcac agttcttttt ctatatatga aattcgggct
      541 tgaaacgctg cagaatttca ggattgttgc cgacattatg tggttgtatt ttttctttat
      601 gttgatatat atacccaaag taatccacat cattttctat tttttggatt atgtttatat
      661 aaagattttc aaacacgaca atgtttattt cgacattacc cgcataattg taagcataat
      721 ttctgtcatt attttactcg taggcgcata catcacaccc cgaaactttg aggtagttac
      781 agtacaagtg ccaataaaca atcttcctcc agacttcaat ggatataaaa ttgtcctgat
      841 atcagacatt caccttggaa gttggaacaa aaaatttgag aaattaaaac ctgttatcaa
      901 acttgtgaat gaacaaaatc ctgatattat aatttttgcc ggcgatatgg tgaataactt
      961 tgcttcggaa acacaaggct ggaaacctta ttttcttgaa atgaaagcaa aaagtggtga
     1021 atatgccgtg cttggcaacc acgattacgg cgattataca gaatggaata cctacaatga
     1081 cagattggaa aaccggcgtc aaataaagca atttattcgc gattgtggct ttcggctttt
     1141 gctcaatgaa aatgtctatc tgaaaaaagg ccgcgatagc ctgctcttgg tgggggttga
     1201 aaactgggga aaaagcaccc gtttccgcta tagcgattta aacaaagcac tcacaggcag
     1261 tacaccaaac actcctaaaa ttttaatatc acacgatccc acacaatttg atgctgaaat
     1321 tgcaggcaaa aaagacatcg gattaacgct ttcaggccac acacatgcag cacagttggg
     1381 cataaaaata ggcaagcacc tgttttctcc ggcttcgttg gtttttaaat actgggcagg
     1441 tttatacaat gtgaacgaac agtatattta cgtaaaccgc ggcatcggat acatcggatt
     1501 acccatgcat atcggtgtcc ggccagaaat tacagttata actcttaagc gtaaacagct
     1561 taatataaac gcaaaggcac agcgaaacta aaactagatt aaaacagact tcaaacttcg
     1621 atgtaccttt gtaaataatt ttattcaaaa tcaataattc tgctaagcga aaacatctat
     1681 tcattttttt ccaaactgac ttccagccca aaaccaaatc gttgtcagag taagttctta
     1741 ctgcaacttc atttttaccg gggcttactt caatgcaatt ccagtcggga cctgacaaat
     1801 acagatattt caatgctttg ttcgacttaa gagtgatagc aaaatgcctg gaatcaactt
     1861 tttccatctc caaaaataac caacgattcc aactacccgc aatataacaa ctatttgtgc
     1921 cctccggaac ggttaccgag tatgtaatgt cggcatccgg aaccgctttg tcatagactg
     1981 cagcccaatc taacacaaca tcgtcagtcg aataacttct gtcagcacga acgattttat
     2041 ttgcacctaa ttccatataa ccccaacctt gacctgcaaa ataattgtat ttaaacaact
     2101 tgttcgacaa aattgtagtt gtaaaatgtg tagaatctat ccttttcatt tccctgaatg
     2161 tcttccaacc attccaacca cctactatgt agc
//
LOCUS       DATDNM010000458         3737 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2089487, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000458 DATDNM010000000
VERSION     DATDNM010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3737
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2089487"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..952
                     /locus_tag="VI413_07820"
     CDS             161..952
                     /locus_tag="VI413_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018464510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HEY6914567.1"
                     /translation="MDNISIYQVDAFTDELFKGNPAAVCILQNWLSDSQMQLIAAENN
                     LAETAFVLTKGDIFQIRWFTPTIEVDLCGHATLASAYVLFNCLDYKKDTINFYSNRSG
                     ELRVSRQNETLFLDFPTDTLEEQNNTTEIAACIGMEPQLVYKGKTDYLVVLKTAEQVS
                     VLEPNLNEIAKLNARGLIVTAPGNMVDFVSRFFAPQSGIDEDPVTGSAHTSLIPYWSE
                     KLSKMEMTALQLSNRGGSLICINNGDRCLIGGKARLYLTGEINIE"
     gene            992..1549
                     /locus_tag="VI413_07825"
     CDS             992..1549
                     /locus_tag="VI413_07825"
                     /inference="COORDINATES: protein motif:HMM:NF024769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HEY6914568.1"
                     /translation="MNPVFFENQTEFRSWLEKNYKTATEIIVGFYKVNSGKSSMTWSE
                     SVDQALCFGWIDSVRRSIDAESYCIRFTPRNPKSIWSATNIKKVENLLSKGLMLPEGI
                     ALFKNRKEDNSGLYSYENNPLELQEEYKSQLESNTVAFEYLNKQADSYKRIAYFWVLS
                     PKQEKTRQARLEKLILYCEQQKRIF"
     gene            complement(1594..1675)
                     /locus_tag="VI413_07830"
     tRNA            complement(1594..1675)
                     /locus_tag="VI413_07830"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1639..1641),aa:Leu,seq:tag)
     gene            complement(1788..2711)
                     /locus_tag="VI413_07835"
     CDS             complement(1788..2711)
                     /locus_tag="VI413_07835"
                     /inference="COORDINATES: protein motif:HMM:NF026169.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEY6914569.1"
                     /translation="MEKLVAYITMQFDLNETALGKNSSTPEKYDASLLFRIPRIENRA
                     HYGIENANLPFTGVDVWNCYEVSFLTANGLPVSRMMKLIYSCESEYLVESKSLKLYLN
                     SFNMERFGKTVQESEKSVCELVKADLSKLLKTTVEVILFTDKSPELIPFSDLKDKQLT
                     DLISAQTLETIEFSNYLEAPELLKGNLTTEMHEYNFRSDLLRSNCRVTNQPDWGDLFV
                     CISTKYEIDLSTVVSYLVSFRKENHFHEEVVEMIYKRLQDIFKPEELLVAAMYTRRGG
                     IDINPVRASHAGLIDDAFLSTTSRLAKTLRQ"
     gene            complement(2748..>3737)
                     /locus_tag="VI413_07840"
     CDS             complement(2748..>3737)
                     /locus_tag="VI413_07840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009275603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HEY6914570.1"
                     /translation="LVDGAKLNQSLFEAIPSGCAIRNSMSPVFKLKSIKNEVEMAGYR
                     RAMVKDGVALTRFFKWLEENVVSGELTEVSIDEKLYEFRSQQENFIGESFGTIAGYGA
                     HGAIVHYSATEESAATLKPEGIFLLDSGGQYLDGTTDITRTVALGKVTEQQKTDFTLV
                     LKGHIALSMAIFPAGTRGSQLDILARKAMWSLGLNYGHGTGHGVGHFLNVHEGPQSIR
                     AEENPVVLQPGMFMSNEPGLYRTGEYGIRTENLVHIIPAMKTDFGQFLQFETVTLFPI
                     DRELIDIIVLDHDEANWVDEYHQKVYDALSPYLNADEKAWLETKCSPIYDLIF"
BASE COUNT         1143 a          813 c          771 g         1010 t
ORIGIN      
        1 taaattttac caaactccag tcggacaaaa atatgctaaa aatacgccac tcatcatgca
       61 ggaatcaatg caagtcggac aaaagtgggg acaaaaattg ggtaaagaca ttgaagaaaa
      121 gctcaaagaa aagaacaaat aactcattat gatttaacta atggacaaca tatcaatata
      181 tcaggttgac gcttttaccg acgaattatt taaaggaaat ccggcggcag tatgtatttt
      241 gcaaaattgg ttgagcgaca gccaaatgca actgattgca gccgaaaaca atctggctga
      301 aactgctttt gttcttacca aaggagatat ctttcaaatt cgttggttca ccccaacgat
      361 agaagtcgat ttgtgcggac acgccacgct ggcttctgcc tatgttttat tcaattgtct
      421 ggattataaa aaagatacaa taaatttcta ttctaacaga agcggagaac taagggtcag
      481 tcggcaaaat gaaactctat tccttgactt tccaacagac acattggagg aacaaaataa
      541 taccacagaa attgccgctt gcattggcat ggaacctcaa ctggtttaca aaggaaaaac
      601 ggattatctg gttgtgctta aaaccgcaga acaggtatca gtgcttgaac caaatctgaa
      661 tgaaatagcc aaactgaatg cacgtggatt aattgtaaca gcccccggta acatggttga
      721 ttttgtttcc cgcttctttg ctccccagtc gggcattgac gaagatccgg tgacaggttc
      781 agctcataca tcattaatcc cttattggtc ggaaaagctc agcaaaatgg aaatgaccgc
      841 tttgcaatta tccaatcgtg gtggaagcct gatttgcata aataatggtg accggtgcct
      901 gataggtgga aaagcccggt tatatctgac cggtgaaatc aatatcgaat aagaatttaa
      961 aagcatcctc tttaaattaa atacaagcga tatgaaccct gtctttttcg aaaatcaaac
     1021 agaatttaga agctggttgg agaaaaacta taagactgca acagaaatca tcgttggttt
     1081 ctataaggtt aactccggaa aatcttcaat gacctggtcg gaatctgtgg atcaggctct
     1141 ctgttttggg tggatcgaca gtgtaaggag atctattgat gcagaaagtt attgtatccg
     1201 gttcacgcca cgaaacccga aaagcatttg gagcgcgaca aacataaaga aagtggaaaa
     1261 cctgctatcc aaaggcctta tgctgccaga aggaattgcg ctttttaaaa acaggaaaga
     1321 agataattcc ggtttgtaca gctacgaaaa caaccccctt gaacttcagg aggaatacaa
     1381 atcccaactc gaatcaaaca cagtagcatt tgaatactta aacaaacaag cggactcgta
     1441 taagcgaatt gcctattttt gggtactaag cccaaagcag gaaaagaccc ggcaagctag
     1501 actggaaaag ctcattctgt attgcgaaca gcaaaaacga attttctgaa aacaaaaaat
     1561 cccgacagtc gttagactat cgggattttt ttgtgcggct gaagggactc gaacccccac
     1621 gcctctcggc accagatcct aagtctggcg cggctaccaa ttacgccaca gccgctactg
     1681 tgtttgcggg tgcaaagata ctacgatttt tggttttcac aagcgttgca aacatttttt
     1741 tgaaatctaa ttgtaaaaac acgcaaaaac aagtgcgttc aaaggtttta ttgcctcaaa
     1801 gttttagcca accggcttgt tgtgcttaaa aaagcatcgt ctatcagtcc ggcatgcgaa
     1861 gcccgaacgg ggtttatatc aattccgcca cgccgggtgt acatagctgc aaccagcaat
     1921 tcttccggtt tgaaaatatc ctgcagacgt ttataaatca tttctaccac ttcctcgtga
     1981 aaatggtttt ccttgcggaa cgaaaccagg taagaaacaa cagttgacaa gtcaatttcg
     2041 tattttgttg aaatgcaaac gaataaatcg ccccagtccg gctggttggt tacccggcaa
     2101 ttggaccgca acaaatcact tcggaaatta tattcatgca tttcggttgt cagatttcct
     2161 ttcaacagtt ccggtgcttc cagataattc gaaaactcaa ttgtttcgag cgtttgtgcc
     2221 gaaattaaat cggtaagttg cttgtctttc aaatcggaaa aaggaattag ctccggactt
     2281 ttatctgtaa agagaatcac ttcaaccgtt gttttcaaca acttgctcaa atctgctttt
     2341 accaattcac acacgctttt ttctgattcc tgtaccgtct ttccgaatcg ctccatgttg
     2401 aacgagttca gatacagttt cagcgacttg gactccacca aatattcgct ttcgcaggaa
     2461 tatatcagtt tcatcatgcg cgatacaggc aacccgttgg cagtaaggaa tgatacttca
     2521 tagcaattcc acacatccac gcctgtgaat ggaagatttg cattttcaat tccgtaatga
     2581 gcccgatttt ctatacgggg aatacgaaaa agcagagaag catcgtattt ctccggagtt
     2641 gatgagtttt taccgagagc ggtttcgttt aaatcaaatt gcatggtgat ataggctact
     2701 aacttttcca aagttttaaa ctttggaaaa gttagtaaat tagatagtta gaaaatcaaa
     2761 tcgtaaatcg gactacattt agtttcgagc catgcttttt catcggcatt taaatagggc
     2821 gaaagcgcat catatacttt ttggtgatat tcatcaaccc agttcgcttc atcatgatcg
     2881 agcacaataa tatcaatcaa ctcccggtct atcgggaaca acgttacagt ttcgaactgc
     2941 aggaactggc caaagtcggt tttcattgca gggataatgt ggacgaggtt ttcggtgcgg
     3001 ataccgtact cgccggtgcg atacaaacca ggttcatttg acataaacat gcccggctgc
     3061 agtaccacgg gattttcttc tgcacgtata ctttgaggac cttcatgcac attcaggaaa
     3121 tgaccaactc cgtggcctgt tccgtgtccg taattcaaac caaggctcca catggctttg
     3181 cgagccagaa tatcgagttg tgaaccacgc gtgccggcag ggaaaatggc catggataag
     3241 gcaatatgac ccttcagtac caacgtaaaa tctgtttttt gctgctcagt aactttacct
     3301 aaagctacag tacgcgtaat atcagtagtt ccatcgaggt attggcctcc tgaatcgagc
     3361 aaaaagatgc cctccggttt taatgttgca gccgattctt cggtagcact gtaatgtaca
     3421 atggctccat gcgcaccgta tccggcaatg gttccaaagc tttcgccaat aaaattttcc
     3481 tgctggctgc ggaattcata caacttttca tcaatggaaa cctcggtaag ttcgcctgag
     3541 actacatttt cttccagcca cttgaagaaa cgggtgagag ccacgccatc ttttaccatg
     3601 gcccggcgat aaccggccat ttccacctcg ttcttaatac ttttcagttt aaaaacaggc
     3661 gacatggaat tacgaatggc gcaaccggaa ggaatagcct cgaacaaaga ctggtttagt
     3721 ttggcaccat caaccag
//
LOCUS       DATDNM010000459         4031 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1020756, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000459 DATDNM010000000
VERSION     DATDNM010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4031
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1020756"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..226)
                     /locus_tag="VI413_07845"
     CDS             complement(<1..226)
                     /locus_tag="VI413_07845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005857662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914571.1"
                     /translation="MEEPILNEAKKLYNEPMHTCEHILNQTMVRMFGCRRSVNAHIER
                     KKSKCDYLLAQAPTEKQLIEITDKVNEVISS"
     gene            complement(330..2213)
                     /locus_tag="VI413_07850"
     CDS             complement(330..2213)
                     /locus_tag="VI413_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6914572.1"
                     /translation="MTFRELNLKDDILSAIEELGYEQPMPVQEKTIPFMLEQTADLVA
                     LAQTGTGKTAAFGLPVLNLIDASRKQVQALVLAPTRELCIQIANDLKGYSKNMRGMRI
                     VPVYGGEDIRTQLRQLDTAPQIIVATPGRLIDLIERGKIELGAIDFLVLDEADEMLNM
                     GFKEDIETILERTPDTRRTMLFSATMPKEIANIAKRYMKNYEEITVGTKNAGSENVEH
                     IYYVSQAKQRYLVLKRIVDLNPDIYGIVFCRTRQETKEVADKLMHDGYNADALHGDLS
                     QAQRDTVMQKFRIRNIQLLVATDVAARGLDVSDLTHVINYNLPDDVEIYTHRSGRTGR
                     ANKKGIAVSIIHSKERFKIKDIERMLRKTFIQEQIPNGLEVCKKQLFYLIDRMENVEV
                     SEEQIETYMPQIMKQLEYLSKEELLKRFVSLEFNRFLSYYKNTEDLNLPERSERGERS
                     ERGERGAKPGGRVRLKMNVGEREGIDPKRFLGIINDVTGDKSINIGSIEVTNKFTFFD
                     VFADQLDQVVTAFAGQTELEVSEAKGSKSFEGGGSRKPEYRSRGSYGGGESRSGGGYR
                     GGDRGGDRPARPAASAASGEKPWRNRELGDRSSRPSAGSGERRSSGGSGYKGGGGSSY
                     KRR"
     gene            2694..>4031
                     /locus_tag="VI413_07855"
     CDS             2694..>4031
                     /locus_tag="VI413_07855"
                     /EC_number="2.7.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007570582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047334 - diphosphate-fructose-6-phosphate
                     1-phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphate--fructose-6-phosphate
                     1-phosphotransferase"
                     /protein_id="HEY6914573.1"
                     /translation="MTKSPLQIARASYQPKLPAALKGNVVLKEGAATESVADQADIKS
                     LFPNTYGMPIITFEQGEKKQNPVVGVGVILSGGQAPGGHNVISGLYDGLKALNPNNKL
                     YGFLGGPSGLVDHEYIELTTEIVDEYRNTGGFDIIGSGRTKLEEEWQYEKGAEICKKL
                     GINAIVVIGGDDSNTNACVLAEYYSQKNAGIQVIGCPKTIDGDLKNEMIETSFGFDTA
                     CKVYSELIGNIQRDANSAKKYWHFIRLMGRSASHITLECALQSQPNICIVSEEVEAKN
                     QTLNDVVDDIVDVIVHRASHGLNFGTILIPEGLIEFIPAMKKLIAELNDLLAHNEDFN
                     AMNTDEEKRQYVKGMLSKKSSDVYRSLPKGIAKQLTLDRDPHGNVQVSLIETEKLLIE
                     MVAKRLAQLKAEGKYKGKFSAINHFFGYEGRCAIPSNFDADYTYSLGYTASLLI"
BASE COUNT         1208 a          829 c          737 g         1257 t
ORIGIN      
        1 tgctactaat tacctcattt actttatcag taatttcaat taattgcttt tcagtgggag
       61 cttgggccag caaataatca catttacttt ttttccgttc aatatgcgca ttcacagaac
      121 gcctgcaacc aaacattcga accatagtct gattcaaaat gtgctcgcag gtgtgcattg
      181 gttcattata taattttttg gcttcgttaa gtatgggctc ttccattttc tataaatttg
      241 actgcaaaga taatcattca gtttgaaatc tataaaaaac ggataaccca tttctgaatt
      301 atccgtctta tcattttata ttattctgct tatcgtctct tgtatgaaga tccgcctcca
      361 cctttgtagc cagaaccacc actgcttcgg cgctcaccgc tacctgctga cggacgactg
      421 cttctgtcgc ctaattcgcg attacgccaa ggtttttcac cactggcggc acttgctgca
      481 ggacgagcag gacgatctcc gcctctgtca ccaccacgat aaccaccacc tgaacgagat
      541 tcgcccccac cataactacc gcgtgaacga tattcaggtt tacgactacc accaccttcg
      601 aatgatttac ttcctttagc ttcactcact tccaattcag tttgtccggc aaaagcagtt
      661 accacctgat caagctgatc tgcaaaaaca tcaaagaaag tgaacttatt ggtaacttca
      721 atagaaccga tattgattga tttatcgccg gttacatcat tgataatacc caggaaacgt
      781 ttcgggtcaa taccttcgcg ttcaccaaca ttcattttca aacgaacacg gccacccggt
      841 ttagctccac gctcgcctct ttcactacgt tcaccacgct cgctacgttc aggcaagttc
      901 aaatcttcgg tatttttata atagctcaag aaacggttaa attccaatga aacaaaacgt
      961 ttcagaagtt cctctttact aaggtattcc aattgtttca taatttgcgg catgtaggtt
     1021 tcaatttgct cctcactcac ttccacattt tccatacggt cgataaggta aaacaattgt
     1081 tttttacata cttccaatcc atttggaatt tgttcctgaa taaaagtttt acgaagcata
     1141 cgttcgatat cttttatttt gaaacgttct tttgagtgga taattgaaac ggcaatacct
     1201 tttttattgg cacgaccagt acgaccacta cggtgcgtat aaatttccac atcatcgggc
     1261 aagttgtagt taataacgtg agttaaatcg ctcacatcca atccacgggc agccacatca
     1321 gtagcaacta acaactggat attacggata cggaattttt gcataaccgt atcgcgttgt
     1381 gcttgcgaaa gatcaccatg aagtgcatca gcattgtaac cgtcgtgcat caatttatcg
     1441 gcaacttctt ttgtttcctg acgggtacgg caaaatacga taccgtaaat atcagggttc
     1501 aaatccacaa tacgtttcaa taccaaataa cgttgtttgg cttgtgatac ataatagata
     1561 tgttccacat tttccgaacc tgcattttta gttccaacgg taatttcttc gtaattcttc
     1621 atatagcgtt tggctatatt ggcaatttct ttaggcatgg tagccgagaa aagcatagta
     1681 cgacgcgtat caggcgtacg ttccagaatt gtttcaatat cttctttgaa acccatgttc
     1741 agcatttcgt ctgcttcatc aagtaccaaa aagtcaatgg cacccaattc tattttaccg
     1801 cgttcaatta agtcaatcaa acgaccagga gttgctacaa taatttgcgg agcagtatcc
     1861 agttgacgaa gctgcgtacg gatatcttcg ccaccataca caggcacaat gcgcattcca
     1921 cgcatgtttt tcgaataacc tttcaggtcg ttcgcaattt gaatacacaa ttcgcgggtt
     1981 ggtgccaaca ccaaggcttg cacttgtttg cgacttgcat caatcaggtt taatacaggc
     2041 aacccgaaag ctgcagtttt tcctgttccg gtttgtgcca aagccactaa atcggcagtt
     2101 tgctccaaca tgaacgggat ggttttttct tgcacgggca taggttgctc gtacccaagt
     2161 tcttcgatgg ccgataggat atcgtccttc aaattcaatt ctctaaatgt catttgtttg
     2221 tttttagtac acgtttacga gtagtcatcc ggcgatattt ttatgagaat gaattcgttc
     2281 agaacccaac tactcataga accctcatgt acattttatt ccctggaaaa gaacaaaaat
     2341 tggattcggg tctcattcgt tttacaaacg tgcacccttt gttaagcaga ctgctaaagt
     2401 taaagcagta taaatcggat atttacccac aacgtatagt tgtttttaaa tcgggtgcaa
     2461 aggtagtgaa aagatttgaa acttttacca gataaaataa aataagtttt ttcagccaat
     2521 ttgttgattt taattcgact gaatcgtatt tacaaaaact tatgatagcg attaaatttc
     2581 acctattcat ttgtcttgta ttattgaaat atttcattaa ttttgcaacc aatttactac
     2641 aaaaacatgt atttgaatat caaactatta taaaaatatc gaacatgaaa tcaatgacca
     2701 aaagtccttt gcaaattgca cgtgccagct accaacctaa attgccggca gcattaaaag
     2761 gcaatgtagt cttaaaagaa ggtgctgcaa ccgaatcagt tgcagaccag gcagacatca
     2821 aatctttatt tccgaacact tatggaatgc ctattatcac ttttgaacaa ggtgaaaaga
     2881 aacaaaatcc agttgttggt gttggcgtta ttctttccgg aggacaagct ccgggtggac
     2941 acaatgtgat ttctggttta tacgatggat taaaagcatt gaatcctaac aataaattgt
     3001 atggattttt gggtggtcca agcggattgg ttgatcatga atatattgaa ttgactacag
     3061 aaattgttga tgaatatcgt aacacaggtg gtttcgacat tatcggttca ggccgtacaa
     3121 aactggaaga agaatggcaa tatgaaaaag gtgctgaaat ttgcaaaaaa ttaggtatta
     3181 atgctattgt tgtgattggt ggagacgatt caaatacaaa tgcatgcgtt ttagctgaat
     3241 attattctca aaaaaatgca ggaattcagg ttattggttg ccctaaaacg attgatggcg
     3301 acttgaaaaa cgaaatgatt gaaacttcat ttggttttga tactgcatgt aaagtatatt
     3361 ctgagttaat tggtaacatt caacgtgatg ccaactctgc aaaaaaatac tggcacttta
     3421 tccgtttgat gggtcgttct gcttcacata ttacattgga atgcgcatta caaagccagc
     3481 caaacatttg tattgtttca gaagaagttg aagctaaaaa tcaaacgttg aacgatgttg
     3541 ttgatgacat tgtggatgtt attgttcacc gtgcaagtca cggattgaat tttggaacaa
     3601 ttcttatccc tgagggattg atcgaattta ttcctgccat gaaaaagttg atcgctgaac
     3661 ttaatgactt attggctcac aacgaagact ttaatgccat gaacactgac gaagaaaaac
     3721 gtcaatatgt aaaaggtatg ttgtctaaaa aaagttctga cgtttaccgc agcctcccaa
     3781 aaggaattgc aaaacaatta acgttggatc gtgacccaca tggtaacgtt caggtttcat
     3841 tgattgaaac tgaaaaactg ttgatcgaaa tggttgcaaa acgtttggct caattaaaag
     3901 ccgaaggcaa atacaaaggt aaattctctg caatcaacca cttttttggt tacgaaggtc
     3961 gttgtgctat cccttcaaat tttgatgcag attacacata ttcattagga tatactgctt
     4021 cacttcttat t
//
LOCUS       DATDNM010000460         2133 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1448745, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000460 DATDNM010000000
VERSION     DATDNM010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1448745"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            10..501
                     /locus_tag="VI413_07860"
     CDS             10..501
                     /locus_tag="VI413_07860"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013064456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEY6914574.1"
                     /translation="MAQKNVAPFYKFKSKNIEGKEISMKAYEGKVVLIVNTASKCGFT
                     PQYEGLETLYKKFKDKGLVILGFPCNQFGGQEPGSAEEISKFCSLKYGVTFPMFQKIE
                     VNGDNADPLYKYLKTALPGTLGNDIKWNFTKFLLDKKGNPVSRYGSSTKPEDIIADIE
                     KLL"
     gene            complement(596..1681)
                     /gene="leuB"
                     /locus_tag="VI413_07865"
     CDS             complement(596..1681)
                     /gene="leuB"
                     /locus_tag="VI413_07865"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEY6914575.1"
                     /translation="MSNLENKTLNIAVLPGDGIGPEIVEQALNVTKAICSKFGHSLTY
                     EYAIVGACAIDAVGEPYPKATHDLCMKSDAVLFGAIGDPKYDNNPAAKVRPEQGLLKM
                     RKDLGLYANIRPVTTFPSLIHKSPLRADLVDGADFMCIRELTGGMYFGRPQGRAEDGN
                     TAYDTCVYTREEVERILHLAYKYAGQRNKKVTIVDKANVLATSRLWRQIGQEIAPQYP
                     EIETEFMFVDNAAMRIIQWPKSFDVLVTENLFGDILTDEASVITGSLGMLPSASVGIH
                     TSVFEPIHGSYPQAAGKNIANPLATILSAALMFEYAFGMMEEGALIREAVAASMDANV
                     VTEDIANNGKAYSTSEVGEWIVNYISK"
     gene            complement(1981..>2133)
                     /locus_tag="VI413_07870"
     CDS             complement(1981..>2133)
                     /locus_tag="VI413_07870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-isopropylmalate synthase regulatory
                     domain-containing protein"
                     /protein_id="HEY6914576.1"
                     /translation="VIPPGGKTDAFVQTIITWKFNDKVFKTRGLDGDQTVAAIKATIK
                     MLNIID"
BASE COUNT          698 a          414 c          371 g          650 t
ORIGIN      
        1 ttaccggcta tagctcaaaa aaatgtagcc cccttttaca aattcaaatc taaaaatatt
       61 gaaggtaaag aaatcagtat gaaagcctac gaaggcaaag tggtgctgat tgtaaacact
      121 gcaagcaaat gtggatttac ccctcaatat gaagggttgg aaacgctgta taaaaaattt
      181 aaagataaag gtttagtaat cctgggattt ccatgtaacc aatttggtgg tcaggaaccg
      241 ggaagtgctg aagaaatttc aaaattttgc tcattgaaat atggagttac gttccctatg
      301 tttcagaaaa ttgaagtgaa tggtgacaat gcagatccac tttacaaata ccttaaaaca
      361 gctcttccgg gaacattggg aaatgatatt aaatggaatt ttactaagtt tttactcgat
      421 aaaaagggaa atccggtgag cagatatgga tcttcaacca agcccgaaga cataattgcc
      481 gatatagaaa aattattata gaaaagggag aacagagttc caactccgtt acctttaaaa
      541 caaaaataag ccaaccgttt tacgattggc ttattttatg tttaagaaca aaatcttatt
      601 ttgaaatata atttacaatc cactcaccca cttctgaagt agaataagct tttccattgt
      661 tggcaatatc ttcggtaaca acattagcat ccatacttgc agcaacagct tcgcgaatca
      721 aagctccttc ttccatcatg ccaaaagcat attcgaacat taaagctgct gaaagaatag
      781 tagctaatgg gtttgcaata ttttttccgg cagcttgcgg atacgaacca tgaattggct
      841 caaatacaga agtatgaata ccgacagaag cagaaggcaa catacctaac gaaccagtaa
      901 ttacggaagc ttcgtctgtg agaatatcac caaataagtt ttcagttacc aatacatcaa
      961 agctttttgg ccattggata atacgcatag cagcattgtc aacgaacata aattctgttt
     1021 caatttcagg atattgaggt gcaatttcct gaccaatctg gcgccacaaa cgagatgttg
     1081 ccaatacgtt tgctttatca acaatagtta cttttttgtt gcgttgaccg gcatatttat
     1141 aagccaaatg cagaatgcgt tccacttcct cgcgggtata aacacacgta tcgtacgcgg
     1201 tgtttccatc ttctgccctt ccctgcggac gaccaaaata catcccacct gttaactcgc
     1261 ggatacacat aaaatcagct ccatcaacta aatcggcacg aagtggagat ttgtgaataa
     1321 gagaaggaaa agttgtaacc ggacgaatat tggcatataa acccaaatct ttgcgcattt
     1381 ttagcaagcc ttgttccgga cgaacttttg ctgccggatt attgtcatat ttaggatcac
     1441 caatagcacc gaaaagcaca gcatcagatt tcatgcaaag atcatgagtt gcctttggat
     1501 aaggctctcc aacagcatca attgcacatg cgcccacgat agcatattca tacgttaatg
     1561 aatgaccgaa tttactacaa atagcttttg ttacatttaa agcctgttcc acaatttccg
     1621 gaccgatacc gtctccgggt aaaaccgcaa tgttcagggt tttattttcc aaatttgaca
     1681 tttttgatat tttttaatga tttattttat ttttgtagca aataattttg ttgttgtaat
     1741 actaattact atttttacgc actagcacct ttaaattaaa tacttatgaa cattgttttg
     1801 atcccggtag cagctattat gcttattatt ttggtataca ttctcaaatc cattccgaga
     1861 aaagagaata aacacgaggt aaaaataaaa gcaataatca ccttcctttt cctggttagt
     1921 tacattgcat tttgttattt tgtaccttct ccgtactaga gaccaaacat tgatagatta
     1981 ttaatctatt atattcagca tttttattgt agcttttata gccgcaacag tttggtcacc
     2041 atcaagaccg cgtgttttaa acactttgtc gttaaacttc caggtaataa tagtttgtac
     2101 aaaagcatct gtttttccac ctggaggaat aac
//
LOCUS       DATDNM010000461         3099 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_273989, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000461 DATDNM010000000
VERSION     DATDNM010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3099
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273989"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..189)
                     /locus_tag="VI413_07875"
     CDS             complement(<1..189)
                     /locus_tag="VI413_07875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914577.1"
                     /translation="MKTNYFYQVLFALFISSTGFAAENAAKEPVVISGTKFTYPLIEK
                     WIAEYQKVNPNANIKLAAK"
     gene            complement(763..1272)
                     /locus_tag="VI413_07880"
     CDS             complement(763..1272)
                     /locus_tag="VI413_07880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006283844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6914578.1"
                     /translation="MDIQIIIKSTFMTFENEFRQLNEAWISKYFILEDSDKLVLNNPQ
                     KYILNKGGNVFIALNAGKVVGCCALLVHDLFTCELGKMVVDPRVQGKGIGSLLGNALI
                     EKARERGFKRVILEGNTKMEASISLYRKLGFQEVLFEQIKQTHELHTRCNIFMELNLI
                     PFDGPEFYI"
     gene            1909..2220
                     /locus_tag="VI413_07885"
     CDS             1909..2220
                     /locus_tag="VI413_07885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914579.1"
                     /translation="MKNLLFSLFVVFLTMSCTQSSAPACEQDSTFSMEFTNGTNDPYD
                     LYINDTYQQIVSAKSKVTYTIPAGYWSAEVVQRSGYTLYQTDKTYSNTYESCTNYYIV
                     F"
     gene            complement(2287..>3099)
                     /locus_tag="VI413_07890"
     CDS             complement(2287..>3099)
                     /locus_tag="VI413_07890"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914580.1"
                     /translation="VAIYDSGTPRPTTTISTYPNNDSYVIRFINSTTMWGFNNHSTGF
                     DFNKLTVDATGVKEGTNVGSIVNSFSVNDFVYDNTKTKAFFDYGAVIDLSYSLPYTIG
                     TFTGANGRVTYDKFRNLACYATTDNSYSTSSVITFKRYNPSTFLLYDSQVISGYTGQV
                     KHITACGGGCYAFNTGDYVIILKDPTAGISTVYETNKNLEIYPNPAKNQFTVRNDIQI
                     RKLQIIDMAGKVVAEHVNPDNTVQVSEIAKGSYIVKCYDNENACYTTRLMKM"
BASE COUNT          912 a          603 c          611 g          973 t
ORIGIN      
        1 ttttgcagcc agttttatat tggcattcgg atttaccttt tggtattctg caatccattt
       61 ttcgattaaa ggataagtaa atttggttcc gctgattact acaggttctt tagctgcatt
      121 ttcggcagca aatccggtag aagaaataaa cagggcaaaa agcacctgat aaaaataatt
      181 cgttttcatg tgtaaataat tgtttttaaa agtcacatgg aactcgcatg ccagatttct
      241 aacaatgttg gtggatctct gtatttatgc tcgtttcata tctttaatta ttgaatgatt
      301 atacttaaga atgaatcagg ctagtgaata ctgattttaa ataataaaat gtttattcta
      361 atattgcccc tgtttagatt attatgaggc gttgggaagt tgagcaaaag aaatcaacac
      421 gatttgctac agcagcacat tcgcatagat gaggagttgg gagttgattc ctgagaaaaa
      481 ataagttggg ctaacgaacg agtccggaga gaatccggca gctgctcgcc tgattgtcgg
      541 gaggcagaca acacgcgttg agttgtgtaa taaatacctg tgttcatact atactttttt
      601 aaatcgaata ggaggtttct catttacgat gcaaaagtag atgataccca cggttgccga
      661 aataccgatt gagggtcatt tacatacctt tctttaggta ttttatcagt attaatacag
      721 tttttgatct gatttcaaga agaactggtg caaaacaatg catcaaatat aaaattctgg
      781 accgtcaaat ggaatgagat tcagttccat aaagatatta caacgggtat gtagttcatg
      841 ggtttgtttg atctgctcaa acaggacttc ctgaaacccc agcttccgat agagtgagat
      901 ggaggcttcc attttcgtgt ttccttcgag gatcacccgt ttaaatccac gctcacgtgc
      961 tttttcaatc aatgcatttc caagcaacga gccaatgcct ttgccctgaa cccgcggatc
     1021 aacaaccatt ttgcccagtt cgcaggtaaa aagatcgtga acaagcaatg cacaacaacc
     1081 aactactttc cctgcattca gggcaataaa cacatttcct cctttgttca gaatgtattt
     1141 ttgtggattg tttaaaacca acttatccga atcttccaga ataaagtatt ttgaaatcca
     1201 ggcttcattc aactgcctga actcgttttc gaaagtcata aatgttgact taataatgat
     1261 ttgtatatcc ataattaata tattatcagt gtttaaggct gaaacccttc gttttatcag
     1321 ccgagaaaca aaaaagtatg cgggcaacta atgccggtaa cagaacctgt ttttagcaat
     1381 taagaagagc aataccagat aactgagggc aactacgagt cggacttcat tgcttcacat
     1441 tcactcttat cgtacaggtt atacaacccg gatgtgagtc tttgacacgt acctgtcaaa
     1501 gcgattgaca catacctgtc aaagtgcttg acaggtacgt gtcaaggtct tcaaccaatg
     1561 caggtcagac tgcctgataa agaaggatgc gtgtatccat acagggaatg ctgatagaat
     1621 acatattccc gctttttacg agtcctttct ttccgtacac tatattgtga tcattgctta
     1681 gtcgtgcaaa gttctgtcaa ttactcaacg tgcgcaatcc cgttccgtag gtatttctct
     1741 acttattttg cggtatataa aaacagcagt cataaatcaa tggatttatg actgctgcgc
     1801 aacatgggaa tcatgtaaat aattttctga attgtataac taattcatga ctgaattgga
     1861 tgtactttgt attgtaagta tacgcattcc ttctaaatat aaaatgaaat gaaaaatctg
     1921 ttattttcac tctttgttgt tttccttaca atgagttgta ctcaatcttc ggcgccagcc
     1981 tgcgaacagg atagcacctt tagcatggag tttacaaacg ggacaaatga cccatacgat
     2041 ttgtacatca atgatacata ccaacaaata gttagcgcta aatcaaaagt tacatatact
     2101 atccctgccg gctattggag tgcggaagtg gttcaacggt cgggttatac cttgtatcaa
     2161 acggataaaa cctatagtaa tacctatgaa tcgtgtacca attactatat tgtattttag
     2221 tagatctttt tccacctgct tacgctggtt ataaatacgc accaacagcc ggttccggtt
     2281 ccgccgttac attttcatta gcctggtagt atagcacgcg ttttcgttgt cgtaacattt
     2341 cacaatgtac gatcctttgg caatttcaga aacctgaact gtgttgtccg gattaacatg
     2401 ttctgccacc actttaccgg ccatatctat aatctgaagt ttcctgatct gtatgtcatt
     2461 ccggacagtg aattgatttt ttgccgggtt aggataaatc tcaagattct tgtttgtttc
     2521 gtataccgtt gaaatgccgg cagtagggtc ttttaaaata atgacatagt cgccggtgtt
     2581 gaaagcgtaa caaccgccac cgcaagccgt aatgtgtttt acctgtccgg tgtatccgct
     2641 tatcacctgg ctgtcgtaca gtaaaaatgt acttggatta tatcgtttaa atgtaataac
     2701 actgctggtg ctatagctgt tgtcggtagt ggcgtaacaa gccagattcc tgaatttatc
     2761 gtatgttaca cgtccgttgg ctccggtaaa tgtgccaata gtataaggaa ggctatacga
     2821 caaatcgata accgcaccat agtcgaaaaa tgcttttgtt ttagtgttat cgtacacaaa
     2881 atcgtttaca ctaaagctgt tgacaatgct tcctacgtta gttccttctt taactccggt
     2941 ggcatcaacg gtgagcttat tgaaatcgaa accggtggag tgattgttga atccccacat
     3001 agtagtgctg ttgataaaac gaataacata actatcatta ttcggataag tggaaatagt
     3061 tgtggtgggg cggggagtac ccgaatcata aatagcaac
//
LOCUS       DATDNM010000462         2155 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_166969, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000462 DATDNM010000000
VERSION     DATDNM010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2155
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166969"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2155)
                     /locus_tag="VI413_07895"
     CDS             complement(<1..>2155)
                     /locus_tag="VI413_07895"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator transcription factor"
                     /protein_id="HEY6914581.1"
                     /translation="NVEFSEASACLLRSGEICVGSKSGFYSFRPEAVRRRVINAPLVF
                     TRLFLFNKEVAIGEGNSILQTEIDKTSQIVFDHKQNVFTIEFATLDMRAPEKIQYAYK
                     LDGFDADWNNVQTKHFATYTALPPGKYTFRVKSTDSEGVWLNNERQIELRILPSFWQS
                     NFAKFIYALLVIGLFLGTLYFFLTIFKLKNNVLLEKQMTDMKLRFFTDISHELRTPLT
                     LISLPVDNILQEDLDPSIKEQLVLVRRNLDRVMGLINQILDFRKVQNNKMRLTVEEVE
                     FGAFVKMCSSNFVEIANTKNVRFHIVDTTDNAKVWVDPERFDSIISNLLSNAFKFTPG
                     GKSITVKTSIQQNVAVLSVADEGIGIAQEKINFIFDRFFSISTLRNITQKSTGIGLDL
                     VKKLVDLHHATIRVESQLGKGTTFEVEFKLGNEHFDNDVDIILSDHATLTEDIADIDQ
                     TSKLEKPDSEQVAPLIMVVEDNDELRHFLKKSLKKNYRVAEAENGLVGWRKIEQLMPD
                     FIIADLLMPEMDGLELTRKVKEDTRTSHIPVILLTAVTDMESKVAALKIGVDDYITKP
                     FSSEFLHARIENLMGQRNQLQQFYRSQIVLAKPDFTLPPLEIKSQEEVFMQHLIQLMN
                     DNLENFDLNIDLLATELGMSRTVFFNKLKSLTGLSPVEFVREVRFERAAEYIRDTQLT
                     VSEISYRVGIEDPRYFSRCFKQKFGMTPSEFRQQNG"
BASE COUNT          613 a          499 c          413 g          630 t
ORIGIN      
        1 accattttgc tgccggaatt cagatggtgt cattccaaat ttctgcttga aacaacggct
       61 aaaatagcgc ggatcttcaa ttccaactct atatgaaatt tcagagacgg tgagttgcgt
      121 atcgcggata tattcggcag cccgctcaaa ccggacttcg cgcacaaact caacaggaga
      181 taaaccggtg aggcttttga gtttattaaa gaaaacggtc cgactcatac ctaattccgt
      241 ggccaacaaa tcgatgttca ggtcgaagtt ttcgaggtta tcattcataa gctggatcaa
      301 atgctgcata aaaacttctt cctgcgattt aatttcgagc ggaggcaatg taaagtctgg
      361 ctttgccaaa acaatttgcg accggtagaa ctgctgtaac tgattgcgct gccccattag
      421 attctcgata cgggcatgca gaaattcgga gctgaatggt tttgtaatgt aatcatcaac
      481 acctattttc agagccgcca ccttactttc catgtcagtt acagcggtaa gtaatatcac
      541 cgggatatgc gaagttcgtg tatcctcctt tactttccgg gtcagctcca gcccatccat
      601 ttctggcatt agcaaatccg caatgataaa gtccggcatt aattgttcaa ttttccgcca
      661 ccctaccaat ccgttttcag cttcggctac cctgtagttt ttctttaaac tcttcttcag
      721 gaaatggcgt aattcatcat tgtcttccac caccataatt aatggcgcca cttgttccga
      781 atccggtttc tccaacttgg aagtctggtc tatatcggct atatcttcgg ttaaagtggc
      841 atgatcggaa agaataatat ccacatcgtt atcaaaatgc tcattaccca gtttaaactc
      901 aacttcgaaa gtagtgcctt tccccaactg actctcaaca cgaattgtag catgatgcaa
      961 gtcaaccagt ttctttacca gatcaagccc gattcccgta cttttctgcg tgatattgcg
     1021 caatgtggaa atgctaaaga agcgatcgaa aataaaattg attttttcct gcgctattcc
     1081 tattccctca tcggcaacag agagaacagc cacattttgt tgaatacttg tttttacagt
     1141 aatgcttttc ccacccggtg taaacttaaa tgcattggaa agcaagttgg aaattatgga
     1201 atcgaaccgt tcaggatcta cccacacttt cgcgttgtcc gtggtgtcaa caatatggaa
     1261 tctgacattt ttagtatttg caatttcgac aaaattactg ctgcacattt ttacgaaagc
     1321 tccaaattct acttcttcca ctgtcaatct catcttatta ttctgcactt tcctgaagtc
     1381 aagaatctga ttgataagcc ccattacgcg gtccaggttc cggcggacaa gtaccaactg
     1441 ctctttaata gatggatcaa gatcttcctg aagaatatta tccaccggca aagaaatcaa
     1501 cgtaagcgga gtgcgcaatt cgtgcgagat gtctgtgaag aaccgaagtt tcatatccgt
     1561 catctgcttt tcaagcaaca cgttgttttt caatttgaaa attgtaagga aaaagtacaa
     1621 cgtgcccaaa aacaaaccga ttactaacaa ggcatagatg aattttgcaa aattcgattg
     1681 ccagaatgac ggaagtatcc gaagttcaat ctgccgttcg ttattcagcc aaacaccttc
     1741 actatcggtt gatttcaccc tgaaagtata cttccccgga ggcaaagccg tgtaagtggc
     1801 aaaatgtttt gtttgcacat tgttccaatc ggcatcaaaa ccatcgagct tgtatgcata
     1861 ctgaattttt tcaggcgcac gcatatcaag cgttgcaaat tcgatggtaa atacattttg
     1921 tttatgatcg aaaacgattt gtgacgtttt atcaatctcg gtctgaagta ttgagtttcc
     1981 ttcgccaatt gccacttctt tattgaataa aaataagcgt gtaaacacga gcggcgcatt
     2041 aatcaccctg cggcgaaccg cctccggcct gaacgaatag aaaccggatt ttgagcccac
     2101 gcatatttct cccgaacgca aaagacaggc ggaagcttca gagaattcca cattt
//
LOCUS       DATDNM010000463         3739 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_167409, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000463 DATDNM010000000
VERSION     DATDNM010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3739
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167409"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..1816
                     /locus_tag="VI413_07900"
     CDS             137..1816
                     /locus_tag="VI413_07900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004307092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914582.1"
                     /translation="MKKFKITVLTLIAIFAMNSCNDALVIPSYGNLTEDNLTGVKQIE
                     NEVISAYAAIGNDEINRPLSLWNYGNVRSDDAYKGGNDQNDGDFLHFLEISSPSIGNE
                     TWYTDGFWYNNYVAISRANFALKLLNKVSDSEMSNKKVRIAEMRFLRGHMHFIQKIIF
                     KMVPYIDEIKSPEDIANVSNVALTNDELWQKIADDFQYAYDNLPESQTEVGRANKYAA
                     AAYLAKVYLYKAYRQDEAHNVVSIDQNDLKKVLDLTAYVMTSKYRLENDFANNFLPGS
                     FENGPESMFAVQYSHDDGTTFGRLNMGNALTTPTPGGDFNKPSQNLVDAFKTKNGLPM
                     FDTFADADYSETSDKVDPRLFHTVAIPGKPYKYTSVNFSQNQSRNPGMYGYFSSLKEN
                     VDPASIYYVKTGPWYANSKNQIVIRYADVILMRAEALIETGSYNDALPLINQIRSRAK
                     ASTGLIGFAKNLDVQLYQNGVNCTWNQDFARKALRWERRLEFAMEGSRFFDLTRWGVT
                     DAVINNYYRKEELKHTFFQGAQFTKNKNEYVPVPIQQINFSKGIYKQNYGF"
     gene            1829..2950
                     /locus_tag="VI413_07905"
     CDS             1829..2950
                     /locus_tag="VI413_07905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914583.1"
                     /translation="MKKIIYNILFVLCLVIAFSSCDNEIKSILDTTGDTSIHTFSING
                     VQGTINAENSTISVILPSGSSLKALSPVITVADGAIVTPNSGTAVDFADSQGNLTKVT
                     YTVTNKDLYQKYTVSVDVARAKITSFKIGSVQGDIDDVNKKISLYLPVGTDLTALYPV
                     VEFTSGATISPALGSAVNFTNPVTYTLDYLGSTFNYVVTVIAGEKPKPILVLYNGEDV
                     APAWDPIASTINNGTINPKTDGINSTPTCISIMRRKAGTDDGGRAWSGGALWHNYKVN
                     IDPAVYNKFTMMVLKNYPGVVHLELQSDGETNKDFVATSYSAAHLGEWQELTFVIPAS
                     RTAIINNILVAIYDADTSTDPNFADQMMYWDQLKVYPKQ"
     gene            3003..>3739
                     /locus_tag="VI413_07910"
     CDS             3003..>3739
                     /locus_tag="VI413_07910"
                     /inference="COORDINATES: protein motif:HMM:NF012475.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 32"
                     /protein_id="HEY6914584.1"
                     /translation="MKRKLFLVPAFFLFICCTGCGGNNPPVPPVTSEIDTTTTIRTIQ
                     ETGGYVTLYKPQSGYVGDPMPYYNESDNTFYVFFLQDWRNGAPTDHPIYCTKTVDYGS
                     FQSFTEAIPCGTAGSQETLLGTGSFIKDASGKLYGFYTGHNGSLYPAEKVMLATSTDM
                     RTFTKVPNATFQAPDGYDKNNFRDPCVYYDTTRSCYVLLVTSIKDGKGVIIRYTSTDL
                     LSWTLIAPLTDLDSDAQILECPDIFKMG"
BASE COUNT         1180 a          683 c          768 g         1108 t
ORIGIN      
        1 aacctgttga cattgaaaag tagcaagttt acaggattag accctgaaaa tccaaattta
       61 gcttatccta tttccactac attcaccgta ggtttaaatg tggcgtttta atttttcatt
      121 ataaaaaaga aacagtatga aaaaattcaa aataacagtt ttaactctga ttgcaatttt
      181 tgcaatgaat tcgtgtaacg atgctttggt aattccatct tatggaaacc tgactgaaga
      241 taatctgacc ggagttaaac aaatagaaaa cgaagtgata tcagcctatg cagcaatagg
      301 taacgatgag ataaacagac cgttgagttt gtggaattat ggtaatgttc gttcggatga
      361 tgcttacaaa ggaggtaacg atcaaaatga tggtgatttt ctacactttc ttgaaatttc
      421 atctccctct attggcaacg aaacatggta taccgatggt ttttggtaca ataattacgt
      481 agcaatttcg cgcgctaact ttgcattgaa gctacttaat aaagtcagtg atagtgagat
      541 gtcgaacaag aaagtccgca ttgccgaaat gcgtttcctt cgtggtcaca tgcattttat
      601 tcagaagatc atcttcaaaa tggttccgta cattgacgaa atcaaatcgc cggaagatat
      661 agccaatgtt tcgaatgtag ctttgacgaa cgatgagtta tggcaaaaaa ttgctgatga
      721 tttccagtat gcttacgata atttgcctga aagccaaacc gaagttggac gtgccaataa
      781 atatgctgct gccgcttatt tggctaaagt gtatttgtat aaggcttatc gtcaggatga
      841 agcgcacaac gtcgtttcaa tcgatcagaa tgatttgaaa aaagtacttg acctgaccgc
      901 ttacgtgatg acttcaaaat atcgactgga aaacgatttt gccaataatt tccttccggg
      961 aagttttgaa aatggtcctg agtctatgtt tgccgtgcaa tactcacacg atgatggtac
     1021 cactttcgga cgtttgaata tgggaaatgc actcacaact ccgacaccgg gtggagattt
     1081 caacaaaccg agtcaaaatc tggtagatgc tttcaagaca aaaaacggat tacccatgtt
     1141 tgatacgttt gctgatgctg attatagtga gacaagtgat aaggttgatc cgcgtttatt
     1201 tcacactgtg gccataccgg gtaaaccata caaatatacg agtgtgaact tttctcaaaa
     1261 tcagtctcgc aatccgggaa tgtatgggta tttctcttca ctaaaggaaa atgtggaccc
     1321 ggcaagcata tactatgtaa aaacaggtcc gtggtatgct aattctaaga atcaaatcgt
     1381 gattcgctac gcggatgtga ttttgatgcg tgctgaggct ttgattgaaa caggaagtta
     1441 taatgatgca ttgccgctta ttaatcagat ccgtagtcgt gctaaagcaa gtacaggttt
     1501 aatcggtttt gcaaagaatc tcgatgtcca actttatcaa aacggcgtta attgcacctg
     1561 gaatcaggat tttgccagaa aagctttacg ctgggagcgt agattggaat ttgcaatgga
     1621 aggtagtcgt ttcttcgatt tgacacgctg gggagtaacc gatgcagtta taaataacta
     1681 ttaccggaaa gaagaactaa aacatacttt ctttcagggt gcacaattca caaaaaacaa
     1741 aaatgaatat gtgccggttc ccattcagca aattaatttc agtaagggaa tttataaaca
     1801 aaattatgga ttttaaaatc aattgaatat gaaaaaaata atatataata tcctgttcgt
     1861 actttgcctt gttattgctt tttcatcctg tgataatgaa ataaaaagca ttttagatac
     1921 aacaggcgat acatccattc atactttcag tataaatgga gtacaaggta ctatcaatgc
     1981 tgaaaattct actatttcag ttattctacc ctcaggttca agcctcaaag ctctttcacc
     2041 ggttattact gtggcagatg gagctattgt aacaccaaac agtggtacgg ctgttgactt
     2101 tgctgactcg cagggtaatc tgacaaaagt tacttacacg gtaacgaaca aagatttgta
     2161 tcagaaatat actgtttctg tagatgtagc aagagccaag attaccagtt ttaaaattgg
     2221 ttcggtacag ggcgatattg atgatgtaaa caaaaagatt agcctttatc ttcctgtcgg
     2281 aactgacctg acagccttgt atccggttgt ggaattcacg agtggtgcca caattagtcc
     2341 ggctttaggc agtgccgtta atttcaccaa tccggtaaca tatacgctcg attatttagg
     2401 ttcaactttt aactatgttg ttacagtaat tgcaggagaa aaaccaaaac ctattttggt
     2461 tctatacaat ggtgaagatg tagctccggc ttgggatcca atagccagta cgataaataa
     2521 tggtacaatt aatccgaaaa cagatggaat caattcaact ccgacctgta tttcaattat
     2581 gcgacgaaaa gccggaaccg atgatggtgg tagagcatgg tcgggaggtg ctttgtggca
     2641 taactataaa gtcaatattg atccggcagt ttataataag ttcaccatga tggtgctgaa
     2701 aaactatccc ggagttgtgc atttagaatt acaatctgat ggcgaaacga ataaagactt
     2761 cgtggcgact tcttattctg ctgctcatct cggagaatgg caagaactta ctttcgtgat
     2821 cccggcaagt cgtacggcca ttatcaacaa tattctggtg gcaatatatg atgctgatac
     2881 tagtaccgat ccgaattttg ctgaccaaat gatgtattgg gatcagttga aagtatatcc
     2941 aaaacaataa tttcataagt acgcggtgta atcttgcacc gcgtacaata tcacaaaaca
     3001 atatgaaaag aaaattattt ttagttcccg cttttttcct gtttatatgc tgcaccggtt
     3061 gtggtggaaa taatcctcct gtaccgcccg taacatccga aatagacacc acaacaacta
     3121 ttcggacgat tcaggaaacg ggtggctatg ttacgcttta taaaccacaa agtggttatg
     3181 tgggcgatcc tatgccttat tacaatgagt cagataatac tttttatgtg ttctttcttc
     3241 aggactggag aaatggagct ccaaccgacc atccgattta ttgtactaaa acagtggatt
     3301 atggaagttt tcaaagtttt acggaagcta ttccctgtgg aactgcaggt tcacaggaaa
     3361 cacttttggg aacaggcagc tttataaaag atgcaagtgg aaaactatat ggattttaca
     3421 ccgggcacaa tggaagtctg tatccggcag aaaaagtaat gttggcaact tcaacagata
     3481 tgcgaacctt tacaaaagtt ccaaatgcaa catttcaggc tcccgacgga tacgataaaa
     3541 ataatttcag agacccatgt gtgtactacg acaccacccg ttcatgttat gttttgttgg
     3601 ttacatctat taaagatgga aaaggagtta ttatccgtta tacttcaact gatttgttaa
     3661 gctggacgtt aattgcccca ctaactgatt tagattcgga tgcacaaatt ctggaatgcc
     3721 cggatatttt caaaatggg
//
LOCUS       DATDNM010000464         5321 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_59518, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000464 DATDNM010000000
VERSION     DATDNM010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5321
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59518"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..415
                     /locus_tag="VI413_07915"
     CDS             <1..415
                     /locus_tag="VI413_07915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HEY6914585.1"
                     /translation="DRMLFTVFPEGENPAAKHAVTHYKVIERMAYVTLVECRLETGRT
                     HQIRVHMKHIGHTLFNDERYGGHDILRGTTAAKYKQFVKNCFEICPRQALHAKTLGFV
                     HPRTGEMMHFESELPDDMQQLIEKWRNYAKFLDEE"
     gene            537..1514
                     /locus_tag="VI413_07920"
     CDS             537..1514
                     /locus_tag="VI413_07920"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEY6914586.1"
                     /translation="MKKNIAIVAGGDSSEVVVSLKSAAGLYSFMDKERYNIYIVTIVG
                     KTWQVEWSDSEKIAIDKNDFSFTRNGEKTNFDFAYITIHGTPGENGILQGYFELIGLP
                     YSCCGVLAAAITFNKFTCNQYLKGFGVKVSESLVLRSGQTVTDEEVAQKIGFPCFVKP
                     NVGGSSFGVTKVKSMDQVQPAIALAFAEGDEVMIEAFMAGTEITCGIYKTKNKTQVLP
                     VTEVVSENEFFDYDAKYKGQVQEITPARISDSLTERVQKLTSAIYDILGCKGIVRIDY
                     IISEGDVINLLEVNTTPGMTATSFIPQQVAAAGLDIKEVMTEIIENELL"
     gene            1623..2600
                     /locus_tag="VI413_07925"
     CDS             1623..2600
                     /locus_tag="VI413_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEY6914587.1"
                     /translation="MKTFDEITELIASEIDRINWSKEPRGLYEPIGYVLSMGGKRIRP
                     ALTLMACNLYSEDVQPAVNTALGLEIFHNFTLLHDDIMDRADVRRGKPTVHKKWDDNT
                     AILSGDVMQISSYQFVAQTPIQYLKPVLDLFSQTAAEICEGQQYDVDFENRDDVKAEE
                     YLEMIRLKTAVLLGCALKCGACIGGAGEEDAQNLYDFGINIGLAFQLKDDLLDVYGDE
                     ATFGKKIGGDILCNKKTYMLIHALELAKDADAVELEKWIKTSDENQANDKIQAVTSLY
                     NKLGIKTICEDKMQDFYTKAIANLEKVSVSDNKKQELRKLADKLMFRND"
     gene            2704..3423
                     /locus_tag="VI413_07930"
     CDS             2704..3423
                     /locus_tag="VI413_07930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914588.1"
                     /translation="MPYRRLPNTDQARLRALRTAIQQADKQNYGEQVVEYKTIHEAKT
                     YLSGFEKQLTQYQQTLESQVLANKRYQQIVHNARLYISHFIQVFNLSVIRGDIKKEHK
                     LFYQLDPNVHTVPDLSTEATLIHWGKCIIDGENERLRNGGLPIYNPTIAKVKVHYEVF
                     KEYKSTQKLHQGATNRNWEDLVNLRQKGDEIILNIWNQVEAKYKDEKPYSRLIKCQAY
                     GLIYYYRKGEKELTKADDLVE"
     gene            complement(3449..4078)
                     /locus_tag="VI413_07935"
     CDS             complement(3449..4078)
                     /locus_tag="VI413_07935"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEY6914589.1"
                     /translation="MPDKKQYSLEMNNLVKDILSLFSKKTEAIIDQKKQIRQEIRLLK
                     KSLTKDLKQAQAKAVFEKIEMLSEFKAAETILMYWSTPDELPTQAAISAWCTEKQLFL
                     PSVNGEKMVLKRYSPNGKLVQKSLGIWEPDLSETYNGKIDLVIVPGIAFDLEKNRLGR
                     GKGYYDRFFKKYKPLKIGVGFDFQLKHSIPVAKHDIKMDMIITPSQTVS"
     gene            4253..5077
                     /locus_tag="VI413_07940"
     CDS             4253..5077
                     /locus_tag="VI413_07940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914590.1"
                     /translation="MKKISIVLILLFVNGLISAQISTIRPTSTSIANTSVADTKNWMA
                     FDNPAMLGYVDRAEVGTQFENRYLISELSTKSCQVGIPSKLLNTGLSFSHFGYSLYHE
                     MMVGLGFARNFSDKFALGMQFNYYTAFFAASNSYRGVFLPQIGFSAKLSPNFSLGFHS
                     FNPFQTNMKTEFATKRLPSVFSMGTQYFFSPELAWRTQIDKEVSSNYRFATGFEYQMI
                     EQLSVKMGAYGSDYLVPCLGFGFNSGSVAVNLNCELHPVLGLNTLAAIKYRFSARR"
     gene            5074..>5321
                     /locus_tag="VI413_07945"
     CDS             5074..>5321
                     /locus_tag="VI413_07945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914591.1"
                     /translation="MKRSILHIILFLCCSYTLRAQDAATTTEQLIADIFEQYTAESED
                     AIDYDSFFEDLMFCAQNPINLNRATREQLDKLPFLSDI"
BASE COUNT         1627 a          967 c         1116 g         1611 t
ORIGIN      
        1 cgaccgcatg ttgttcaccg ttttccccga aggtgaaaat ccggctgcaa aacacgctgt
       61 aacgcattat aaagtcattg aacgaatggc ttatgttacg ctggtggaat gtcgtctgga
      121 aaccggacgt acgcaccaga tccgcgttca tatgaaacat atcggccaca cgcttttcaa
      181 cgatgagcgt tatggtggtc atgatattct aagaggaact acagctgcca aatacaaaca
      241 attcgtaaaa aactgtttcg aaatttgtcc acgacaagct ttgcatgcca aaacgcttgg
      301 ttttgtgcat ccccgtacag gtgaaatgat gcattttgaa agtgaattgc cggatgatat
      361 gcagcagttg attgaaaaat ggcggaatta tgccaaattt ttggatgaag aatagatccc
      421 taacccttaa agggaattgg gatggttttt ttctgaggtt taagtaaata catagattaa
      481 aagaatagta acaatactaa tttaaactcc attttagggg tcgggggtca ttcattatga
      541 aaaaaaatat tgccatcgta gcgggtggag attcgtcgga agtagttgtt tcgcttaaaa
      601 gtgcagcggg actgtattcg tttatggata aagagcgtta caatatttat attgtgacga
      661 tagttggcaa aacctggcag gttgaatggt ctgattcaga gaaaattgct attgataaga
      721 acgatttcag ttttacccga aatggcgaaa aaactaactt tgattttgct tacatcacca
      781 ttcacggtac accgggtgag aacggaattc ttcaggggta ttttgaatta atcggcttgc
      841 catattcatg ctgtggagtg ctggctgctg ctatcacgtt caataaattt acctgcaacc
      901 agtatttgaa aggctttgga gtgaaggttt ctgagtcgtt ggtgctgcgt tccggacaaa
      961 ctgttactga cgaagaagtg gctcagaaaa ttggttttcc atgttttgtg aaaccaaatg
     1021 tgggcggaag cagctttggt gtgacgaaag taaaaagcat ggatcaggtt cagccggcta
     1081 ttgcccttgc atttgccgaa ggcgacgaag tgatgattga agcattcatg gccggaacag
     1141 aaattacctg cggtatttat aaaaccaaaa acaaaacaca ggtattgcct gttacagaag
     1201 ttgttagtga aaacgaattt ttcgattacg atgctaaata taaaggtcag gttcaggaaa
     1261 ttacaccggc ccgtattagc gattcgctga ctgaacgtgt tcaaaaactc acttcggcta
     1321 tttacgatat tttgggttgc aaaggcattg tgcgcattga ttatataatt tccgaaggcg
     1381 atgtaatcaa cttgctggaa gtaaatacaa ctcccgggat gaccgctacc agctttattc
     1441 cacaacaagt tgctgctgcc ggactggata ttaaagaagt gatgactgaa attattgaaa
     1501 atgaactttt gtaaacacta agttactaag tacacaaggg tcactaagtc tttttgaaat
     1561 acattatatt attgactatt ttactaagtg tttctttgtg aacttagtgg taaatttaaa
     1621 gtatgaaaac attcgacgaa ataaccgaac tgatagcttc tgaaattgac cgcatcaatt
     1681 ggagcaaaga accgcgcgga ttgtacgaac caattggata tgtgctttcg atgggcggaa
     1741 aacgaatccg tccggcattg acgctgatgg cttgcaattt atattcggag gatgtgcaac
     1801 ctgctgtaaa tacagctctt gggttggaaa tatttcataa ttttaccctg ttgcacgacg
     1861 atattatgga tcgggccgat gttcgtcggg gcaaacctac cgttcataaa aaatgggatg
     1921 acaataccgc tattctttcg ggcgatgtga tgcaaatttc ttcctatcaa tttgttgcac
     1981 aaacacctat acaatattta aaaccggtat tggatttgtt ttcgcagacg gcagctgaaa
     2041 tttgtgaagg ccagcaatac gacgtggatt ttgaaaatcg tgacgatgta aaggcggaag
     2101 aataccttga aatgattcgt ctgaaaacgg cagtattact tggttgtgcg ctgaagtgcg
     2161 gagcttgtat aggtggagca ggagaggagg atgcacagaa tttgtatgac tttgggatca
     2221 acattggcct ggcattccag ttgaaagatg atttgctgga tgtgtatggc gacgaagcca
     2281 cttttgggaa aaaaattggt ggcgacatac tttgtaataa gaaaacgtac atgcttattc
     2341 atgcactcga actggcaaaa gatgctgatg cggtggaatt agaaaaatgg ataaaaactt
     2401 cggatgaaaa tcaggcaaat gataaaattc aggctgtaac ttcgctttac aataaacttg
     2461 ggataaagac tatttgcgaa gataagatgc aggattttta tacaaaggcc atcgcaaatc
     2521 tcgaaaaagt gtcggtttcc gataataaaa agcaagaatt gagaaaatta gccgataaat
     2581 taatgtttcg gaacgattaa tttatttatc tttgtgggca agaaacaatt ttcaatttct
     2641 taattctcaa ttttcaatta agataagact cttcaattgt aaattgtaaa attgcaaatt
     2701 aatatgccct accgtcgact tccaaacaca gatcaggctc gtttgcgtgc attgcggacg
     2761 gccatccaac aagcggacaa acaaaattac ggcgaacagg ttgtagaata caaaaccatt
     2821 catgaagcca aaacgtacct aagtggtttt gaaaaacaat taactcagta ccagcaaaca
     2881 cttgaaagtc aggtactggc aaacaagcgc taccagcaaa ttgtacacaa cgcccgctta
     2941 tatatttccc attttattca ggtttttaat ctttcggtta tccgcggaga tataaaaaaa
     3001 gaacacaagc tcttctacca actggatcca aacgttcaca ccgtgcccga tctaagtacc
     3061 gaagcaactt taatccattg gggaaaatgc ataatagatg gtgaaaatga acgtcttaga
     3121 aatggcggat tacctattta taatccaact attgccaaag taaaggttca ttatgaagta
     3181 tttaaagagt acaaatctac ccaaaagctt catcaaggtg ctacaaacag aaattgggaa
     3241 gatttagtta acctgcgcca aaaaggagat gaaataattc taaatatatg gaatcaggtt
     3301 gaagcaaaat acaaagacga aaaaccttat tcgcgtttaa taaaatgtca ggcttacgga
     3361 ttgatttatt attaccgaaa aggagaaaaa gaactgacca aagcagatga tttggttgaa
     3421 taaaaaaaga ggcgaaagcc tttttttatt atgatactgt ttgtgaggga gttattatca
     3481 tatccatttt gatatcgtgc tttgcaaccg gtatcgaatg cttcaattga aaatcgaatc
     3541 ctaccccgat tttcaggggt ttatattttt tgaaaaaccg gtcgtaatat ccttttccgc
     3601 gccccaagcg gttcttttca aggtcaaaag ctattcctgg aacaatgacc agatcaatct
     3661 tcccattata cgtttccgat aaatccggct cccaaattcc caatgatttt tgaaccagct
     3721 ttccattcgg agaataacgc ttcaaaacca ttttttctcc attaacggaa ggtaaaaata
     3781 gctgcttttc tgtgcaccag gccgaaatgg ctgcttgtgt gggtagctca tctggggtag
     3841 accaatacat caatatggtt tcggctgctt tgaactctga cagcatttca attttctcaa
     3901 aaacagcttt tgcctgggct tgttttagat ccttggtcaa tgactttttc aacaagcgaa
     3961 tttcttgcct gatttgcttt ttctgatcaa taatagcttc agtttttttc gagaaaagtg
     4021 ataatatatc cttaaccagg ttattcattt cgagcgagta ttgttttttg tccggcaaaa
     4081 ttatacaatc tgttctataa acaacagcaa aatatatttt tttgaattat aattaaaaat
     4141 attcttcaaa gatgtttgtt aatctaaaat atattcataa ctttgttaat cacatataat
     4201 tgattgtctt tgagaatttt ctatttttat caccgtatat gttttgataa atatgaaaaa
     4261 aatcagtatc gttttgattt tgcttttcgt caatgggctt atttctgctc aaatttctac
     4321 tattagaccc acttcaactt ccattgccaa cacttcagta gccgatacaa aaaactggat
     4381 ggcatttgac aatccggcga tgttgggtta tgtggatcgg gcggaagtag ggacgcaatt
     4441 tgaaaaccgg tatttgattt cggaactttc tactaaaagt tgtcaggttg gaattccgtc
     4501 aaagcttctg aatacgggac tttcattctc tcactttggc tattcgctgt atcatgaaat
     4561 gatggtgggg ctggggtttg cccggaattt ctccgataaa ttcgcgcttg ggatgcaatt
     4621 caattactac actgcgtttt tcgcggcttc gaattcgtat cggggagttt ttcttcctca
     4681 aattggtttt tcggcaaagc tatcaccaaa tttcagcctg ggatttcatt cattcaatcc
     4741 atttcaaacc aatatgaaaa ctgagtttgc aaccaagcgc ttgccgtctg ttttcagcat
     4801 gggaacgcaa tattttttct cacccgaatt ggcctggcgt acacagattg acaaggaagt
     4861 gagcagcaat tatcggtttg ccaccggttt tgagtaccaa atgattgaac aattatccgt
     4921 gaaaatgggt gcttatggtt ccgattattt agtgccttgt cttggatttg gattcaatag
     4981 cggaagtgtt gctgtaaatc tgaattgcga actgcatccg gtgcttggat taaatacgct
     5041 tgcggccatc aaataccggt ttagtgcccg ccgatgaaac ggtctattct acatataatt
     5101 ctgtttctgt gttgttctta tactttaaga gcacaagatg ctgccaccac caccgaacag
     5161 ttaattgctg atatctttga acaatataca gctgaaagtg aggatgctat tgattacgat
     5221 tcatttttcg aagatttgat gttttgtgcg caaaatccga taaatctgaa ccgggcaacg
     5281 cgcgagcaac tggataaact tccttttttg tcggatatcc a
//
LOCUS       DATDNM010000465         4131 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1768387, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000465 DATDNM010000000
VERSION     DATDNM010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4131
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1768387"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3342
                     /locus_tag="VI413_07950"
     CDS             <1..3342
                     /locus_tag="VI413_07950"
                     /inference="COORDINATES: protein motif:HMM:NF016260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HEY6914592.1"
                     /translation="KNISLPQDIALLINFKGKLKAFQSTLDMRSSFGAASVMASLDPL
                     ENFSANMNMVDFDMGSLLKDKGMYGPVSLIADVTGRGLDSKTMKAQIKADVSQIYLNK
                     YVYHDLKIDGNASGREFSGKVNLNDKNAVFEFDGLVNLNPDEERYKFHLNVEGVDLQK
                     LNFSKDDIRIGMDATADLKGGTVEKLNGKAGITNLVMTHNGKKYLLDSVLVASVNAPN
                     KSEFNFNSALVGIKYTGTISPTSLPDALTQFINRYFSFTAVKEPKKKPGSSNFAFEIQ
                     LHNHPILSEVLLPELKEFEPGIITGSFDSEKNVLKLNASMKHILYGTTEISDLAMDVH
                     SDSTALKYSLSSLSISNAQINFSNFLFDGKLADNKMLANLSSIDNTGNKKLLIQSQIT
                     KDKDNFKLALDPDNFYLMNNRWNIAPDNYIEFGKPGFLIHHLFMTSGQSQVNIASVND
                     KFKDDLNIAIRNFKLEDITRIVEKDSVLAKGNVDGNVLLKRVNNSYGIIADADITDLF
                     VRSVPIGNLSLKAENPTTERFNVQAKLSGTDNNLTARGFFIPNGGDNSLNIKADIQSL
                     SMKTIEAFSLGQMTEASGTASGNFLIAGRTDAPEITGELTFNNAFLKPAYLNNRLELK
                     HETVQLKLDGIYFNKFTMLDVNKHVATIDGTVKMKNFSDYNFGLHVNSKDFMLFNTTA
                     KDNKEFFGRMIIDSKVDITGPMTLPVINARLKMKKGSNFTFAVPEDKLTTDKGEDVIE
                     FNDSVALSSILYRKDKTIVKKTSLSGFDLASIIEVDKEATLRLLMDPTSSDSLVVKGE
                     AALSFSMDRSGKMSLTGAYNLNDGSYLISLEQVIKRKFIIVPGSTIIWNGDPLDADIN
                     LNAIYTVRAAPYDLIANQKAGSIDDASKNGYKQMYTFLVLLKLRGAILKPEITFEIQL
                     PPEDKGILNGEVNQKLTMLNEDPSLLNKQVFALLVLGRFVQENPLVTESGGTSALVRS
                     TVGNFLSTQLNQLSSKLVKGVDLNFNVQSYDDYQTGQAQGRTQVEIGLKKQLFNDRLM
                     VQLGGSVDVEGDRAKQNQTSEITSDITVEYKLNKDGSYRLKGFRHNQYEGDLDGQLIE
                     TGAGVVYVKDFNKWKDLKKKKKKNP"
     gene            3389..>4131
                     /locus_tag="VI413_07955"
     CDS             3389..>4131
                     /locus_tag="VI413_07955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914593.1"
                     /translation="MKNNKNIGYKSNFNSPLGVGGYLFPLQGIGVLLFICLFLASCSG
                     TSHLPKGERLYTGATIKLESVEKVHKSNIKAIAEAAVRPEPNKSYLGIRPRLWLYMAA
                     GENPKSKFKLWLQKIGQAPVFMSNVSPSATAAVIDAQLFNSGIFNSITTYKIVEKKHT
                     ASVIYTSYIHKPYTIKDLVYNISDDSLSRIIVSDEKKSILKAGEDYNLDILKAERMRI
                     DNVLKNKGYFYFNADYLLFKADTSAVNQTV"
BASE COUNT         1347 a          763 c          915 g         1106 t
ORIGIN      
        1 aaaaatatca gtttgcccca agatattgcg ttattgatta acttcaaagg aaagctaaag
       61 gcttttcaat caacattgga tatgcgaagt agttttggag cagccagtgt gatggcaagc
      121 ctggatccac tggagaattt cagtgccaac atgaatatgg ttgattttga tatggggagt
      181 ttgctgaaag acaaaggcat gtatgggccg gtatcgctaa tcgcggacgt gaccggccgt
      241 ggattggatt ctaaaaccat gaaagcgcaa atcaaagcgg atgtttcgca aatttacctg
      301 aacaagtatg tgtaccatga cctgaaaatt gatggtaatg ccagtggtag ggagttttcg
      361 ggaaaagtaa acctgaatga taaaaatgcg gtttttgaat tcgatggcct ggtgaatctg
      421 aatccggatg aagagcgtta taaattccat ttgaacgtgg agggagttga ccttcaaaag
      481 ctgaatttca gcaaagatga tattcgcata ggtatggacg ccaccgccga tttaaaaggt
      541 ggaacggttg aaaaactgaa tggaaaagcc gggataacca acctggtaat gacgcacaac
      601 ggcaagaagt atttgctcga ttcggtatta gtggcttcgg taaatgctcc gaacaaaagc
      661 gagtttaatt tcaatagtgc ccttgtcggg ataaagtaca ctggaacaat ttcgcccact
      721 tcacttcctg acgcattgac tcaattcatc aatagatact tctcattcac cgctgttaaa
      781 gaaccgaaaa agaaacccgg atcatccaac tttgcgttcg aaatacagct tcacaatcat
      841 cccattctgt cggaagtgct gttgcccgaa ttaaaagaat ttgaaccggg aataattacc
      901 ggaagttttg acagtgagaa gaatgtgttg aaactgaatg cttccatgaa gcatattcta
      961 tatggaacaa cggagatcag cgatctggca atggatgtgc attccgattc tacagcattg
     1021 aaatactcgc tttcaagttt gtcaatttcc aacgcgcaaa tcaacttttc aaactttctg
     1081 tttgatggaa aactggctga taataagatg ttagccaatc tgtcttccat tgacaatacc
     1141 ggaaataaaa aactgttgat tcaatcgcaa attacaaagg ataaagacaa tttcaaactg
     1201 gcactcgatc cggacaattt ctatttgatg aataaccgtt ggaatattgc ccctgataac
     1261 tacattgagt ttggcaaacc cgggttcctg attcaccatc tttttatgac cagtggacaa
     1321 agccaggtaa atatagcttc ggtaaacgat aagtttaagg atgatttaaa cattgctatc
     1381 cggaatttca aactggaaga cattacccgg attgtggaga aagacagcgt tttggcaaaa
     1441 ggcaatgtgg atgggaatgt gttgctgaaa agagtaaata actcgtatgg aatcattgcc
     1501 gatgcagata ttacagactt atttgttcgc agtgttccca ttggaaacct gtctttgaaa
     1561 gcagaaaatc ctactacgga acggtttaat gttcaggcaa agctttccgg taccgacaat
     1621 aacctgaccg cacgtggttt ctttattccg aacggtggcg ataattcact gaacataaaa
     1681 gcggatatcc agtcgctttc gatgaaaact attgaagcat tttcgttggg gcaaatgact
     1741 gaagcctcgg gaactgcttc aggaaacttt ctgatagcag gaagaaccga tgcacctgaa
     1801 ataactggcg aactgacttt caataatgca tttctgaaac cggcttatct gaataaccgg
     1861 ttggaactga aacatgaaac ggttcaactg aaattggacg gaatctattt caataagttt
     1921 acgatgttag acgtcaataa gcatgtggcc accattgatg gaactgtaaa aatgaaaaat
     1981 ttctccgatt ataacttcgg cctgcatgta aattcaaaag actttatgct tttcaacacc
     2041 acagccaaag ataataaaga gttcttcggt cgaatgatta ttgacagcaa agttgatatc
     2101 accggaccca tgacattgcc ggtaataaat gcccggttga aaatgaaaaa aggctctaac
     2161 tttacctttg ctgtgcccga agacaaactc acaaccgaca aaggagaaga tgtgattgaa
     2221 tttaatgatt cagtagcact aagttcaatt ttgtaccgaa aggataaaac catagtcaag
     2281 aaaacgagct taagcggctt tgacctggca tctattattg aagtggataa agaagcaaca
     2341 ttgcggttat tgatggatcc tacttcgtcc gattcattgg tggtcaaagg cgaagcagct
     2401 ttaagtttca gcatggacag aagcggaaaa atgagcctca caggagctta caatctgaac
     2461 gacggaagtt accttatttc gttggagcag gttattaaac gaaaattcat aattgttccc
     2521 ggaagcacca tcatatggaa tggcgacccg ttggatgcag atataaatct aaatgcgatc
     2581 tatacggttc gggcagctcc atacgatttg attgctaatc agaaggccgg ttcaatagat
     2641 gatgcgtcaa aaaacggata caaacaaatg tacacatttt tggtgcttct gaaattgcgt
     2701 ggtgcgatat tgaaaccgga aattaccttt gaaatacaat tgccacctga agataaagga
     2761 attctgaatg gagaggtgaa tcaaaaactg accatgctca atgaagaccc atcgttatta
     2821 aacaaacagg tatttgcatt attggtatta ggccggttcg tacaggaaaa tccgttggta
     2881 accgaatcgg gaggaacttc tgctctggtt cgctctacgg ttggaaattt cttgtcaacg
     2941 cagctaaacc agttgagttc aaagctggtg aaaggcgtgg atctgaactt taatgtacaa
     3001 tcgtacgacg attatcaaac gggacaagcg cagggaagaa cccaggtgga aattggtttg
     3061 aaaaaacaac ttttcaatga ccggcttatg gttcagctcg gaggttcggt agatgtagaa
     3121 ggcgacagag caaagcaaaa tcagacaagc gaaattacga gtgatattac tgtggaatat
     3181 aaattaaaca aagatggcag ttaccgcctg aaaggtttca ggcataatca gtacgaaggt
     3241 gatctggatg gccagttgat agaaaccggt gcgggagtgg tttatgtgaa ggatttcaat
     3301 aaatggaaag atttaaagaa aaagaagaaa aagaacccct agcccctaaa ggggaactgg
     3361 attagcaccg atagttataa ttaagagcat gaaaaataat aaaaacatag gatacaaaag
     3421 taacttcaac tcccctttag gggttggggg ttatcttttt ccccttcagg ggataggggt
     3481 tcttctcttt atttgccttt ttcttgcttc ctgtagcggc acaagccatt tacccaaggg
     3541 tgaacggctt tataccggtg cgactataaa actggaatcg gtagagaaag tacataaatc
     3601 aaatatcaaa gctattgctg aggcggcagt tcgcccggaa ccgaataaaa gttatttggg
     3661 tattcgtccc cggttgtggt tatacatggc tgccggtgaa aatcctaaaa gtaaatttaa
     3721 actctggctt cagaaaatag gacaagctcc cgtattcatg agcaatgtaa gtccctcggc
     3781 aacagctgcc gttattgatg cacagttgtt taattcagga attttcaaca gcattaccac
     3841 ctataaaatt gtagagaaaa aacatactgc atcagttatt tacaccagtt atattcataa
     3901 accatacact atcaaagatc ttgtttacaa catttccgac gatagtttaa gtcgcatcat
     3961 tgtttccgac gaaaaaaaat cgatactaaa agcgggtgaa gattacaacc tggacatttt
     4021 gaaagcagaa cgaatgcgaa ttgataatgt attgaagaac aaagggtatt tctattttaa
     4081 tgccgattat ttgctgttta aagccgatac ttcagctgta aatcagactg t
//
LOCUS       DATDNM010000466         3237 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_380707, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000466 DATDNM010000000
VERSION     DATDNM010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3237
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380707"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(280..1026)
                     /gene="ubiE"
                     /locus_tag="VI413_07960"
     CDS             complement(280..1026)
                     /gene="ubiE"
                     /locus_tag="VI413_07960"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: protein motif:HMM:NF001244.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052624 - 2-phytyl-1,4-naphthoquinone
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0042372 - phylloquinone biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEY6914594.1"
                     /translation="MSKKETDFTKVKPYNQDEEKTAQLARMFNKISDKYDQFNDIMSW
                     GMARVWRKHSLLALKTYNPKQILDIAAGTADMCIKSYEYLNPDHVTGVDISEQMLEMG
                     RVKVAKENLSDKIDLQVQDVSALTFADESFDAATIAFGIRNFEKLNQSLQQIHRVLRP
                     GGHLLILEMNEPEKGLLYKGYQLYTKVFVRMTAKYLSSDKVAYDYLQASMHAFPNGER
                     LIGILAENGFKLNKYRKFTFGVCSMYLVQK"
     gene            complement(1103..1954)
                     /locus_tag="VI413_07965"
     CDS             complement(1103..1954)
                     /locus_tag="VI413_07965"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEY6914595.1"
                     /translation="MLLNFITWNVDPVLFHLGPLSVRWYGLLWAVGIYATLLITQKIF
                     KNEKLPEVWVDKLFIYTVVGTIVGARLGHCFFYEWKQLAEPVTFMGITFTYGNYYLSH
                     PWELLYIWHGGLASHGGAIGILTAMYFYNKNVSKKGYVWIFDRLVIGVAICGAAIRLG
                     NLMNSEIYGDPTTLPWGFLFVRTGETVPMHPTQIYEILYCLLTFVVTWWLYWKKEAYK
                     KNGLIFGVFLIGIFGSRFLLEFIKLNQEAFESNLSLNMGQILSLPFIIAGIWLIVKSS
                     KTPAVTK"
     gene            complement(2041..>3237)
                     /locus_tag="VI413_07970"
     CDS             complement(2041..>3237)
                     /locus_tag="VI413_07970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008764528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SEC-C metal-binding domain-containing protein"
                     /protein_id="HEY6914596.1"
                     /translation="GGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSIFYVSLEDDLM
                     RLFGSERISGIMDKLGFEEGEMIEHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMN
                     SQREVVYSKRRHALMGERIGVDITNMIYDASESIVESAKNNGDFIELDESLLKVFAMD
                     APFTEEEFNTTKASVLAEKVENAAIETFKRKMDKLASIAYPVIKQVYEQKGQQYENIL
                     IPISDGKRVFNITAHLETAYKNEAKEVIKAFEKQILLYVIDDEWKEHLRQLDELRNSV
                     QNASYEQKDPLLIYKLESFGLFKEMIDAMNRKVLAIMMRGQVPMREPEEVREARPTQR
                     MDLSKYKTQKDEVGGGSARQQDPAKMDTREQQKLQPIHVDKVPGRNDPCPCGSGKKYK
                     NCHGAN"
BASE COUNT          956 a          691 c          593 g          997 t
ORIGIN      
        1 acgatcctac aaaaggctgg aatggaaaaa ttggtggagc agatgcagca gaaggtcctt
       61 acttttatat aattaaagct acagggtacg gacttgaccc taaaaaacat gatccgaagg
      121 tgaaatcaac gattattctg aaaggtgata ttaatttgtt gagaggatta aaaaagtaag
      181 aagtttatag ttggttgtct ataacaaaag atataaaata aaaggagtaa aatcaatttg
      241 attttactcc ttttatttta ttcattcact atctccgttt tatttctgaa ccagatacat
      301 actgcaaact ccaaaagtaa acttgcggta tttgttgagc ttgaaaccat tttcagcaag
      361 aattccgatt aaccgttcgc cattagggaa agcatgcatg gaagcctgaa gataatcgta
      421 cgccaccttg tcactcgaca gatattttgc cgtcattcgc acgaaaacct ttgtatacag
      481 ctgataacct ttatataaaa gtcctttttc cggctcattc atttccagaa tcaataaatg
      541 tccgccggga cgtaatacgc ggtgtatttg ttgtaagctt tggttcagtt tttcaaaatt
      601 acgaatgcca aaagcaattg tagcagcatc aaaactttca tctgcaaatg tcaacgcgga
      661 aacatcctga acctgcaaat caatcttatc gctcagattt tcttttgcca cttttacacg
      721 acccatttcc agcatttgtt ccgaaatatc aacaccggta acgtggtcag gattgaggta
      781 ttcgtaagac ttgatacaca tgtcggcagt accggcagca atatcaagta tttgtttagg
      841 attgtatgtt tttaaagcca atagcgagtg tttacgccat acccgcgcca ttccccatga
      901 cattatatcg ttgaactggt cgtatttatc cgaaattttg ttgaacatgc gggcaagttg
      961 cgcagttttc tcctcgtcct gattataagg ttttactttc gtaaaatcgg tctctttttt
     1021 actcataaat tgttttgatt tatcggtcct ttctaaaaga ctgataatat aactctttct
     1081 cttctgaatt gttcgaaata aactatttgg taacggcagg tgttttggaa cttttgacaa
     1141 tcagccagat tcctgcaatg atgaatggca agctaaggat ttgacccata ttcagggata
     1201 aatttgattc aaaagcttcc tgattgagtt tgataaattc cagcaagaaa cgggatccaa
     1261 aaataccaat caaaaatact ccaaaaatta atccgttctt tttgtaggct tcttttttcc
     1321 agtacaacca ccaggttaca acgaatgtca gtaagcaata tagtatttca taaatttgtg
     1381 tcgggtgcat aggtactgtt tcaccggtac gtacaaagag aaaaccccag ggcagagtag
     1441 tggggtcacc ataaatttcg gaattcataa ggttaccaag tcgaatagca gcaccgcaaa
     1501 tagctacacc tattacaagg cgatcgaaaa tccatacata tccttttttc gatacgtttt
     1561 tattgtagaa atacatagcc gtcaaaatac caatggctcc accatggctg gctaagcctc
     1621 cgtgccagat gtacaacaat tcccacggat gagaaagata gtaattgcca taggtaaatg
     1681 taatgcccat aaaagttaca ggctctgcca actgtttcca ttcgtagaag aaacaatgac
     1741 ccagtcgggc tcccacaatg gttcctacaa ccgtataaat aaataattta tccacccata
     1801 cttccggtaa tttctcgttt ttgaagattt tctgggtaat cagcagtgtg gcataaatac
     1861 caaccgccca aagcaatcca taccaacgaa cagataatgg cccgagatga aataatacag
     1921 gatctacatt ccaggtgatg aagtttaata gcatgataat attattagaa gtaagaaagt
     1981 aagaggcaag aggtaagcgc aaattacttg cgtacttact tcttacctct tactgttgaa
     2041 ttaatttgct ccgtgacagt ttttatattt tttgccgctt ccgcaaggac aaggatcgtt
     2101 acgtccaggc actttatcca cgtggattgg ctgtaacttt tgttgttcgc gggtatccat
     2161 ttttgctgga tcctgttggc gtgcgcttcc gcctccaact tcgtcttttt gagttttgta
     2221 tttactcaaa tccatgcgtt gggttggtct cgcttcacgt acctcttcag gctcacgcat
     2281 aggaacttgt ccgcgcatca tgattgccaa tactttgcga ttcatggcat caatcatctc
     2341 tttgaataat ccaaacgatt caagcttgta aatcaacagt ggatcttttt gttcgtagct
     2401 tgcattctga accgaattac gcaattcgtc caattggcga aggtgctctt tccattcatc
     2461 atcaatgacg tacaacagaa tttgtttctc aaatgctttg ataacttctt tagcttcgtt
     2521 tttataagca gtttctaaat gggcagtaat attgaacaca cgttttccat ccgaaatcgg
     2581 aatcagaatg ttttcatatt gttgtccttt ttgctcataa acctgcttga taaccggata
     2641 agcaatagaa gcaagtttgt ccattttacg tttgaatgtt tcaatagcag cattctccac
     2701 tttttcagcc agcacagatg ctttggtagt attgaattct tcttctgtga atggcgcatc
     2761 catggcaaat actttcagca atgattcatc caactcaata aagtcaccat tgtttttagc
     2821 tgattccaca atactttcag atgcatcgta aatcatgttg gttatatcca cgccaatacg
     2881 ttcgcccatt aaggcgtgac ggcgtttgga gtaaaccacc tcacgttgag agttcattac
     2941 gtcatcatat tccaacagac gtttacgaat gccaaagttg ttttcttcca cttttttctg
     3001 agcgcgttca atcgattttg aaatcataga atgctcaatc atttcacctt cttcgaaccc
     3061 aagtttatcc atgatacccg aaatacgctc cgagccgaat aaacgcatta aatcatcttc
     3121 cagcgaaaca tagaaaatag aagaacccgg atcgccctga cgaccggcac gaccacgcaa
     3181 ctgacggtcg acacggcggc tctcgtgacg ctctgtacca atgatagcca aaccacc
//
LOCUS       DATDNM010000467         4830 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_808069, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000467 DATDNM010000000
VERSION     DATDNM010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4830
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_808069"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..2921
                     /locus_tag="VI413_07975"
     CDS             3..2921
                     /locus_tag="VI413_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005834885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6914597.1"
                     /translation="MVISLNVFAQKTTITGLVIDSKNEPLIGVSVVLKGTKTATVTNF
                     DGKFSIEAATNDVLVFSYIGMNPQEITVGTAKTLRVILEDNTKALEEVVVIGYGSVKK
                     KDVTTAITTVSTKDLDQRPMVTAAQALQGKAAGVSVVKPSGTPGQSMVIRVRGTTSMN
                     SSNDPLYVVDGVTLDDISFLAANDIESIQILKDASSAAIYGSRAANGVVLITTKSGIK
                     GKAKVTLNSYVGQTSLGKTIKSLNVSQYKELLSDLGSTIVIPNNVSDSTNWYNETFQN
                     ALTQNYQLSISDATDKLKYYISAGYTDEQGIVKVAFFKRYNFRSNIEDQIRPWLKLGA
                     NVSYSDYTSNGIITGQGSNRAGVVLSVINTPTYARVWDYKNPGQYNTNFYGLNVTSPA
                     ENMARSEDNKAQNNRFITTGSAEITFLPNLKLKSSVTLDRYYNNYTSFLDPIKTSYGR
                     TQHGEATDNRTSTTVMIYDNILSYNKSFGSHNFDFMGGTSGTTSMYTTSYQTVSNFID
                     GTIKTLNAGNKVSQGNGTYNAESALMSYVGRLAYNYDSKYLVTANMRIDGSSKLHPDY
                     RWGYFPSFSAAWRISSEEFMKDLTWIDDLKLRGGWGQTGNQFGLGDYDYLAGYSYNRI
                     NWWETGNANAVPIYTANSIRNKQLTWETCTQSDIGLDLTILKNRLTFAIDYYSKLTTN
                     MLMRVDLPAGSAVVSSIVRNEGEMTNKGFEFSVNSVNLNKDFKWTTDFNISFNQNMLT
                     KLTLSQVYNTAMTSDNIREYIVRNAPGHSLGGFYGYISDGVDSETGEMIYRDITGDGS
                     VTTSDRTYIGNPNPDFTFGMTNVFSYMNFNLSVLLQGSYGNDIFNASRMETEGMYDAK
                     NQSTRVLDRWRRPGMITTIPKAGYDMKVSSYFVEDGSFLRVKDVNLSYNIPVKSMKKI
                     GITRLQPYITATNLLTITKYLGFDPEVNQWGNSGTVQGVDWGTYPQTKSVIVGLNVEF
                     "
     gene            2935..4467
                     /locus_tag="VI413_07980"
     CDS             2935..4467
                     /locus_tag="VI413_07980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011108759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914598.1"
                     /translation="MKSKYIYKILIIGSLFVSLYSCSLDTEPLSSLSELTVGQTNTSD
                     TVKYKYSTKAEIETQYKALYKLLKDRQEHWYLDMLLVAETHSDNAYAGTTGSEVIPME
                     NNSVDAGNSCLARDWDRYLADVAQANTVINNIDSVPDQALTAQERKQWKAEAMIFRAM
                     VWFDMVRLWGNVPIVTKEGVDITAENIEEVYPLYYPKQTNAQEAYGQIAKDLADAITD
                     APAKNASDKTILSKSVARALLAKVYAEKTIRDYSKVLLYCNQVIADGFSLVNNYADLF
                     SLNTAGTDAKIRSSSESILEVNYFTGGGNWVTWRFGRDLLDYDYYFTWAKWLTPSRDL
                     IADFQAENDNVRLNQSVVYYETTWSNYYPAANYPFMYKCRSNVSSIIKLRYADILLLK
                     AEALANLGGASNLAEAAAIVNQIRTRVGLANLPATASASSESMLTAVLHERRLELAFE
                     GQRWFDLVRYGKLQEVMNDLNKRDSGRLPQRRVFTGTSELLPVPQAALDINTNLVQNP
                     GY"
     gene            4487..>4830
                     /locus_tag="VI413_07985"
     CDS             4487..>4830
                     /locus_tag="VI413_07985"
                     /inference="COORDINATES: protein motif:HMM:NF027723.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5016 domain-containing protein"
                     /protein_id="HEY6914599.1"
                     /translation="MKNHIKIGLLGLIIFSFWACQETELRVHYPASTPKIDTATVAET
                     QITYGDTIHVKVAVSDKVEPLSTLLLKVVVSNEVISTETIRTTGNAASIEREIAVPFG
                     PNRPDNEPVKVYL"
BASE COUNT         1513 a          863 c         1054 g         1400 t
ORIGIN      
        1 gtatggtcat ttcgctaaac gtatttgcgc aaaaaacaac cattaccgga ttggtaattg
       61 actcaaagaa tgaacctctt atcggagtaa gtgtggttct gaaaggaaca aaaactgcta
      121 cagtaaccaa ttttgacgga aaattttcga ttgaagctgc aactaatgat gtcctggttt
      181 ttagttatat cggcatgaat cctcaggaaa taacagttgg cacagccaaa accctgcggg
      241 tgattctgga agataataca aaagcactcg aagaagtagt ggttattggc tatggctctg
      301 tgaagaaaaa agacgttaca actgcaatta ctacggtttc cacaaaggat ttggatcaaa
      361 gaccaatggt tactgctgct caggctttgc aaggtaaggc tgcaggtgtg tctgtagtta
      421 aacccagtgg gacgccgggt cagtcgatgg taattcgtgt tcgtggaacc acttcgatga
      481 attcaagtaa tgatcctctt tatgtagtgg acggtgtcac attggatgat atttcttttt
      541 tggccgcgaa tgatattgaa agcattcaga ttctgaaaga tgcatcttct gcagcaattt
      601 acggatcgag ggctgcaaac ggagttgtcc ttattaccac taaatcagga ataaaaggta
      661 aagcaaaggt tactcttaat tcttatgtcg ggcagactag tttgggtaaa acgataaaat
      721 ccctgaatgt aagccagtac aaagaattac taagtgattt gggatctacg attgttattc
      781 ccaataatgt gtccgattct acaaattggt acaacgagac ctttcaaaat gccctgacac
      841 agaattatca actttcgata tccgatgcta cagataaact gaaatattat atatctgcag
      901 gttataccga tgaacaaggt attgtaaaag ttgctttctt taaacggtat aattttcggt
      961 cgaatattga ggatcaaatt cgtccgtggc ttaaacttgg agcaaatgtt tcttattccg
     1021 attacacaag caatggaatt attaccggtc agggatcaaa tagagcaggg gtagttttat
     1081 cggttataaa tacacctact tatgctcgtg tctgggatta taagaatcca ggtcagtaca
     1141 atacaaattt ctatggctta aatgttactt caccggcaga aaacatggct cgctctgaag
     1201 ataataaagc tcagaataac aggtttataa ctacaggtag tgctgaaata acatttttgc
     1261 ctaacctgaa attaaagtct tctgtaacat tggaccgtta ttataacaat tataccagct
     1321 tcctggatcc gattaaaacc agctatggca gaacccagca tggtgaagcc accgataacc
     1381 ggacttcaac cacagttatg atttatgata atatcctgag ttataataag tcatttggca
     1441 gtcataattt tgattttatg ggtggtacct ccggaactac ctccatgtat actacttctt
     1501 accaaacagt ttccaatttt attgatggaa caatcaaaac actgaatgcg ggaaataaag
     1561 tttctcaggg aaatggaact tacaatgccg aatctgctct tatgtcttat gtaggacgtt
     1621 tggcttacaa ctacgacagt aagtatctgg taactgccaa tatgcgtatt gatggttctt
     1681 caaaattaca tccggactac agatggggct atttcccttc attttctgcc gcatggcgta
     1741 tctcttccga agagtttatg aaagatctca cctggattga tgatttgaaa ctcagaggcg
     1801 gttggggaca aactggtaac cagtttggat tgggagacta tgattatctg gcaggctatt
     1861 cttacaaccg cataaattgg tgggaaacag gaaatgcaaa cgcagtgcca atttacacag
     1921 caaattcaat ccgcaataag cagttgacct gggaaacatg tactcagtca gatattggat
     1981 tggacttgac cattcttaaa aaccgattga cttttgccat tgattattac tctaagttaa
     2041 caacaaatat gttgatgagg gttgatttgc cggccggttc tgcagtagta tcaagtattg
     2101 tgagaaacga aggtgaaatg acaaataaag ggtttgagtt ttctgtgaat tctgtgaatc
     2161 tcaacaagga ttttaaatgg acaaccgact ttaatatatc gttcaatcaa aatatgttaa
     2221 cgaagctaac gcttagccag gtttataata cagctatgac tagtgacaat attcgggaat
     2281 atattgttcg gaatgcgccg ggtcattcac tgggaggttt ttatggatat atcagcgacg
     2341 gtgtggattc tgaaactggt gaaatgatat acagggatat taccggcgat ggctctgtta
     2401 ctacatcgga ccggacatat atcggcaacc cgaatcccga ttttactttt ggtatgacga
     2461 atgtcttttc atacatgaac tttaacctga gcgttttact tcagggttca tatggcaatg
     2521 atatttttaa tgcttcaaga atggaaacgg aaggtatgta tgatgccaaa aatcaatcaa
     2581 caagagtttt ggatagatgg agacgtccgg gtatgattac cactatacct aaagcaggat
     2641 atgatatgaa agtttcatcc tattttgtgg aagatggaag ctttttacgt gtaaaggatg
     2701 tgaatttatc ctataatatt ccggttaaat caatgaaaaa gattggaatt acacgtcttc
     2761 aaccttatat taccgctacc aatttattga caattaccaa atatcttggc tttgaccccg
     2821 aagtaaacca atggggaaac agtggtactg ttcagggagt tgactgggga acttatccgc
     2881 agacaaaatc agtaatcgtc ggattaaatg ttgaattcta acaattaaat cattatgaaa
     2941 tcaaaatata tatataagat tctgatcatt ggatctttgt tcgtttcatt gtattcatgc
     3001 tcattggata cagagccgct atcgagcctt tcggaactga cggtagggca aaccaatacg
     3061 agtgatacag ttaaatataa atactcgaca aaagccgaaa tcgaaaccca gtataaggca
     3121 ttatataagc ttttaaaaga caggcaggaa cattggtatc tcgacatgtt gcttgttgct
     3181 gaaactcact cagataatgc atatgcaggt actacaggtt cagaagttat tcctatggaa
     3241 aacaactcgg tagatgcggg gaatagctgt ctggcgcgtg attgggaccg ttatctggct
     3301 gatgtggccc aggcaaacac agtaatcaat aacattgatt cggttcccga tcaggcgttg
     3361 actgcccagg aaagaaaaca atggaaagct gaagctatga ttttcagggc aatggtttgg
     3421 tttgatatgg ttcgtttgtg gggtaatgta ccgattgtaa caaaggaagg ggtggatatc
     3481 actgctgaaa atatagaaga agtataccca ttgtattacc caaagcaaac aaatgcacag
     3541 gaagcgtacg gtcagattgc caaagacctg gctgatgcaa ttacggatgc acctgctaaa
     3601 aatgcctcag acaaaacaat tctttctaaa tctgttgcac gggctttgtt agccaaagta
     3661 tatgcagaga aaacaattcg cgattattcc aaggtattgc tatactgtaa tcaggttatt
     3721 gctgatgggt tctcgttggt aaataattat gctgacttgt tttcattgaa tacagcaggg
     3781 acagatgcaa aaataagatc gtcttccgag tctattctgg aagtaaatta ttttaccggt
     3841 ggtggcaact gggtaacctg gaggtttgga cgcgatttgc tcgattatga ttattatttt
     3901 acctgggcca aatggttaac tccttcgcgt gatctgatag ccgattttca agcggaaaat
     3961 gataatgtac gtctgaatca atcagtagtt tattatgaaa ctacctggag taattattat
     4021 ccggctgcta attatccatt tatgtataaa tgccgttcaa atgtaagcag tataataaaa
     4081 ctacgctacg ctgatatcct tttgctaaag gcggaagcac tggccaattt aggtggagca
     4141 tcgaatctgg cagaggcagc ggcaattgta aatcagataa gaacacgcgt aggacttgca
     4201 aatttgccgg caactgcttc ggcaagttct gaaagtatgc taaccgctgt attgcacgaa
     4261 cgtaggcttg aacttgcatt tgaagggcaa cggtggtttg atttagttcg gtatggaaaa
     4321 ctgcaggaag taatgaatga cctgaataaa agggatagcg gacgtcttcc tcagcgaaga
     4381 gtatttaccg ggacatccga attgcttccg gtaccacaag ctgcactaga tataaatact
     4441 aatttggttc aaaatccggg ttattaataa aataaaattg atagttatga aaaatcatat
     4501 aaaaattgga ttgcttggat tgattatatt ttcattctgg gcatgtcagg aaaccgaatt
     4561 acgagttcat tatccggcat caacaccaaa gattgatacg gcgacagtag ctgaaacgca
     4621 aattacctat ggcgatacca ttcacgtaaa agtggcggtg tctgataagg tggaaccatt
     4681 gtcaacctta ctgttgaaag tggtggtgag caacgaagtt atttctaccg aaaccattcg
     4741 tacaacagga aatgctgcca gcatcgagcg tgaaatcgct gtgcctttcg gaccgaacag
     4801 acctgataac gaacctgtaa aggtctatct
//
LOCUS       DATDNM010000468         3417 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1769231, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000468 DATDNM010000000
VERSION     DATDNM010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1769231"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..459
                     /locus_tag="VI413_07990"
     CDS             <1..459
                     /locus_tag="VI413_07990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914600.1"
                     /translation="QGKLVKVLSATITGTGNFAVSTSYNLNGSASTVIRAQYADLDYV
                     GQAIPTTAQDITGVVLVFGTTAQLVPRSLSDFTPSLGTGLTPTKNTNTYSSNGNIVLS
                     ASANQMVEIFNAVGQKLLSHKAVEGINTIPVSTKGLVLVKIGNQISKVIL"
     gene            complement(548..877)
                     /locus_tag="VI413_07995"
     CDS             complement(548..877)
                     /locus_tag="VI413_07995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914601.1"
                     /translation="MATKSLNMSLSELLTSSTVMSANIKLNEEKIGRYGIDVPGFPTE
                     MDADIKLATETNQEQERLKSQLKTKTEELQQIQLKLEQNYGIAKKTVKMAEPQTNWVA
                     YGIIDKR"
     gene            complement(1191..2126)
                     /gene="queG"
                     /locus_tag="VI413_08000"
     CDS             complement(1191..2126)
                     /gene="queG"
                     /locus_tag="VI413_08000"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HEY6914602.1"
                     /translation="MRDFIKQTALSVGFDACGIAKATALEEDAAFMKQWLAEGKHGEM
                     HYLARNFEKRTDPRQMVPGCKSVVVVLMNYSPAEMQNSSSPKIARYAYSQIDYHTVIK
                     AKLTELEQKICDVYGPDVVCANQQHTFVDSAPVLERRWAERAGLGWIGKHTQLIHPGL
                     GSYCFIGVLMLNVETEYDVPVRPACGNCTRCMDACPTNAIHNGTIDARKCISYLTIEN
                     KNEITAEFHTQLSGCALGCDICADACPWNKKWAKPHEHVELSPVTELLQWDREAWLQL
                     TEAGFNQTFKKSAIKRAGYNKLKENIKLAIASRKD"
     gene            complement(2178..3308)
                     /locus_tag="VI413_08005"
     CDS             complement(2178..3308)
                     /locus_tag="VI413_08005"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEY6914603.1"
                     /translation="MKKTLVLLLVFAGLISCKQNDRFKVSGTVKDADGGMLYFEHSGL
                     LKTTVLDSAKLGADGEFSFKSERPEYPDFYRLRLNDKVITFAVDSCEEIQFAAKEKNF
                     ATDYAVTGSLTSAQIQKLRISLMNIQQKADELNSDMSSDVRNAKVEEIKAAIETHKEM
                     ARKLILENPRSAAAYFAIYQKVNDTFLFSPYVKADKPFCAAVATSYNTFMPEYDRTKN
                     LYSLVMDAIRSERKAKADQVWDDVLQKVGKGYIDIDLKDSKNVSHKLSALEGKVVLID
                     FSSYAADGMVDYTFALRELYNKYHGRGFEIYQVSVDDNKLLWEQSVQNIPWICVRDEA
                     GGSARSYNVSSIPTTFLLDKKGNIISRSPGFEELAKLIEKSL"
BASE COUNT          955 a          765 c          700 g          997 t
ORIGIN      
        1 cagggaaaac ttgtcaaagt tcttagtgca acaattaccg gaacaggaaa ttttgctgta
       61 agtacaagtt ataatctgaa cggaagtgct tctactgtta ttcgcgctca atacgcagat
      121 ttggattacg ttggtcaagc cattccaaca acggcgcaag atattacagg agtagtatta
      181 gttttcggaa caactgccca attagttcca cgctcgttaa gcgacttcac accatcatta
      241 ggaaccggct taaccccaac gaaaaacacg aatacttact cttcgaacgg aaatattgtt
      301 ttatcggctt cggcaaatca aatggttgag attttcaatg ctgttggtca aaaattattg
      361 agccataaag ctgttgaggg aataaataca atcccggttt caacgaaagg attggtattg
      421 gtaaagattg gaaaccagat ttcgaaagtg atattgtaac aaaactttcg gagcattata
      481 taagaaaggc tatccacagc aggatagcct ttcgtgcgtt atgccaatga gggcaaacac
      541 tgtaatttta ccttttgtcg ataatgccgt aagctaccca attggtttga ggctcggcca
      601 tcttcaccgt cttcttggcg atgccgtaat tttgttcaag cttgagttga atttgctgaa
      661 gctcttccgt tttagtcttc aactgacttt ttaatcgttc ctgctcctgg ttagtttctg
      721 tggcaagctt aatatcagcg tccatttcgg tgggaaaccc gggtacgtct attccataac
      781 gtccaatttt ttcttcattt aatttgatgt ttgctgacat aacagtactg cttgtcaaaa
      841 gttcgctgag cgacatgttc aatgattttg tagccatgta agtttatttt taaattaaca
      901 cttattagtc acggccaaag ataaatcatt cagttaaatt ctcaaacaat caaatacatg
      961 ttttaaaact tattttttaa tataaaaaga caactaaaaa aagtcatatg ccggagcatt
     1021 gctgtaaact gccgcaaagt tgctgtaagc ttacctgaag cttgcgggag gttactaagg
     1081 ctttgcggga gtttacttga gcactgcggc agcttactaa gaccttgcgg cagtttacta
     1141 taacattgcg ggagctaccg gaaagtgggc ggaagcagca aaagggacat tcagtccttg
     1201 cgggaagcaa ttgcaagctt aatattttct ttcagcttgt tgtaaccggc acgtttgatt
     1261 gccgattttt taaacgtttg attaaatccg gcttcggtga gctgcagcca tgcttcgcgg
     1321 tcccattgca atagttcggt tacaggtgaa agttccacat gctcatgagg ttttgcccac
     1381 ttcttattcc acggacaagc atcggcgcaa atatcgcatc ccagggcaca accggagagt
     1441 tgcgtgtgaa actcagcggt tatttcattc ttattttcga tagtcaggta cgaaatgcac
     1501 ttgcgggcat caatcgtccc attgtgtatg gcgttggttg ggcaggcatc catgcagcgg
     1561 gtacagttac cacatgccgg acgaactgga acatcatatt ccgtctccac attcagcatc
     1621 aatacgccta taaaacagta cgacccaaga cccggatgaa tgagttgggt atgcttgcct
     1681 atccagccca atccggccct ttcggcccaa cgacgttcca acactggcgc tgaatcgaca
     1741 aaggtatgct gctggttggc gcaaacaaca tcaggtccgt aaacatcgca tattttctgc
     1801 tcaagctcgg taagcttcgc tttaataacc gtgtgataat cgatttgcga ataagcatat
     1861 ctggcaattt tgggagacga ggaattttgc atttctgccg gtgaatagtt catgagcacc
     1921 accaccaccg acttacaacc cggaaccatc tgccgagggt cggtacgttt ttcaaaattc
     1981 cgtgccaggt aatgcatttc gccatgtttg ccttcggcca gccactgctt catgaatgca
     2041 gcatcctctt ccaacgccgt ggctttagct ataccacagg catcgaagcc aacagaaagg
     2101 gcggtttgtt taataaaatc tctcattgaa attcagaata aaaaaacaga gacgctattt
     2161 agtgcgtctc tgcaaattta taaacttttt tcgattagtt ttgccagctc ttcaaaaccg
     2221 gggcttcgtg atattatgtt ccccttttta tccaacagga aagtggttgg aatggaggag
     2281 acattatagg accgcgccga accgccagct tcgtcgcgaa cgcaaatcca cggaatgttt
     2341 tgaacagatt gttcccaaag caatttattg tcgtcgaccg aaacctgata aatttcaaat
     2401 ccacggccgt ggtatttatt atacaattcg cgcaaagcaa aggtataatc caccattccg
     2461 tcggcagcgt aagaggaaaa atcaattaaa acgactttac cttccagcgc cgaaagttta
     2521 tgggaaacgt ttttactgtc ttttaaatca atgtctatat acccttttcc caccttttgc
     2581 aacacatcgt cccaaacctg gtccgctttg gctttccgtt cagaccgaat ggcatccatc
     2641 accaggctgt acaggttttt agtgcggtcg tactcaggca taaatgtatt gtaagaagta
     2701 gctacagccg cacaaaacgg tttgtcagcc tttacataag gcgaaaacag gaaagtatcg
     2761 ttcactttct ggtaaatagc aaaatacgca gcagccgaac ggggattttc aagaatcagc
     2821 ttacgtgcca tttccttgtg tgtttcaata gccgctttta tctcttctac tttcgcattt
     2881 ctcacatccg aactcatatc cgaatttagt tcgtctgctt tttgttggat attcatcaat
     2941 gaaatacgca atttctgaat ttgtgcagaa gtcaaagacc ctgtaaccgc gtaatcagtc
     3001 gcaaagtttt tctctttagc tgcgaattga atttcctcac atgaatcaac cgcaaaagtg
     3061 attactttgt cgttcagccg caaccggtag aagtcaggat actccggacg ctccgatttg
     3121 aaactaaatt cgccatcggc acccagcttc gcagaatcca gcacggttgt tttcaacaag
     3181 ccgctgtgtt caaagtacag catgccacca tcagcatcct taactgttcc gctcacctta
     3241 aaacggtcat tttgtttaca cgaaataagt ccggcaaaaa ccaacaataa tacgagtgtt
     3301 tttttcatac gataataatt gtttattaaa aggtcgtatg gaactcacat gccaccattt
     3361 tcagaacgat ttggtgtttg taaaacatgt tcgtttcata gtagaagtat ttctaaa
//
LOCUS       DATDNM010000469         2971 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_275354, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000469 DATDNM010000000
VERSION     DATDNM010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2971
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275354"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1019
                     /locus_tag="VI413_08010"
     CDS             <1..1019
                     /locus_tag="VI413_08010"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY6914604.1"
                     /translation="INFKYWQYDKVAQSKRQPGSTFKLFVYTAAMMHGKSPCDMMTDK
                     PVTWTYDEKGVKKSWNPRNANGNFMYYPVSLKNAFAQSINTIAVQLAQEVGIPEVIKY
                     AHLLGVRTPLEDKPSTCLGSSDVSLLELVNSYGTVVNEGVYHNPVLVTRIEDKDGNVI
                     YEPKIDQRRVIPYETAWLMTELLKGGMTEPGGTSQALWGWDLFHYNTDFGGKTGTSSN
                     HSDAWFVGVTPKLIGGAWVGGEHRSVHFRTGQLGQGSRTALPIFGTFMEKVLKDESLK
                     QYRGKFPAKPKEKISKDYSCHTYLRPDSTATDSTVIEEGIENVDDLPAEETVPTENTT
                     QPEQ"
     gene            complement(1303..>2971)
                     /locus_tag="VI413_08015"
     CDS             complement(1303..>2971)
                     /locus_tag="VI413_08015"
                     /inference="COORDINATES: protein motif:HMM:NF014731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HEY6914605.1"
                     /translation="FALVRKNYRWAYYIAAIGAATLLADGIITPAITVVSAVEGLNTL
                     IPSIPIPAVAIAILLFLFLIQPLGTARLGKSFGIIMFLWFLMLAILGLFAFIKFPAIF
                     RAFNPYYAILVLKTVPNAFIILGAVFLCTTGAEALYSDLGHCGLHNIRISWIFVKISL
                     IMNYLGQGAWIITHSAEIVRDTNPFFTIMPEWFSFVGVIMATLAAIIASQALISGSFT
                     IISEAISLDLWPNIQIKYPTEIKGQMYIPGVNHALMVLCIVMVLAFQTSSNMEAAYGL
                     SITITMMMTTLLLFIYLHHLKRKMWYSIPMTMFFLTIEGSFFIANMFKFAHGGFATIL
                     IAGALFSVMYIWYNGRRIKNRCVTYEPIAPVVADLNRISKDETIPKFATHLVYVTRAK
                     YPNDMESKIIFSLLNKQPKRADTYWFVYLHRSDEPYQFRYTVKTYVPEKIFRLDIFSG
                     FKQGVHMDTFVHLICKDLEENGKVDLQSRYPSLRERKIEGDFRFVVVERIIRNLDLPP
                     IKKTILTFYYMIKRFSTSDTQILDLDPSMVTLEYVPLKHLRTLDKKK"
BASE COUNT          974 a          503 c          606 g          888 t
ORIGIN      
        1 atatcaattt taaatactgg caatacgata aggttgcaca gtcgaaacgt caacctggtt
       61 ctacttttaa acttttcgtt tatactgctg ccatgatgca tggtaagtcg ccttgcgata
      121 tgatgacaga taagcctgta acctggactt atgatgaaaa aggagtgaaa aaatcatgga
      181 acccgcgtaa tgcaaacggt aactttatgt attatcctgt ttcattgaaa aatgcgtttg
      241 ctcaatcgat caacactatt gccgttcagt tggcacaaga agtgggcatt cctgaagtca
      301 tcaaatatgc tcatctattg ggagtaagaa caccacttga agataaacca tcaacctgtc
      361 ttgggtcatc tgatgtttca ttgcttgagc tggtaaattc ttatggtacg gttgtaaatg
      421 aaggtgtgta tcataatccg gttttggtta cacgtatcga ggataaggat ggaaatgtaa
      481 tatatgaacc gaaaatagat caacgccgag ttattcctta tgaaacagca tggcttatga
      541 ctgaattgct aaaaggtggg atgacagaac ctggtggaac ctctcaggct ttatggggtt
      601 gggatttgtt tcattataat actgactttg gaggtaaaac cggtacttct tcgaatcact
      661 cggatgcgtg gtttgtaggt gtaacgccaa aattgattgg tggtgcgtgg gttggtggag
      721 agcatagaag cgttcacttt cgcacgggac aacttggaca aggtagccga actgctttac
      781 cgatatttgg aacgtttatg gaaaaagtcc ttaaagatga gagtctgaaa caatatagag
      841 gtaaatttcc ggcaaaacca aaagaaaaaa tcagcaaaga ttatagctgt catacatatt
      901 tgagacctga ttctacagca actgactcta ctgtgataga agaaggaatt gaaaatgttg
      961 atgatttgcc tgctgaagaa acagttccaa ctgaaaatac cactcaacca gagcagtaac
     1021 agattgagaa tgaaaataaa aaggagacgc aatattttac gtatcctttt tgtttaatct
     1081 cattaaggtg tttaattcag acaaaaaagc gaaactatac gaggatattt gggtcgctgt
     1141 attattgtta tatttgtatt taagtatcag aaagagtagg agataagtaa atacttgttg
     1201 tttggcaaag taaatttaat cagattataa gtgaaatact cgtaattaaa aacaggatat
     1261 aactgaaagt tatatcctgt ttttgttagg tctaaatatg atttattttt ttttatctaa
     1321 cgttctgagg tgcttaagtg gtacatactc caatgtgacc atggatggat ccaagtccaa
     1381 aatttgtgtg tcggaggttg aaaatctttt aatcatataa taaaacgtaa gaatcgtttt
     1441 cttgataggc ggtaagtcca gattccgaat gatgcgttct acaactacaa atctgaaatc
     1501 tccttctatt tttctttctc tgagtgatgg ataacgactt tgtaaatcaa ctttaccatt
     1561 ttcttctaag tctttacaaa tcaggtgtac aaaagtatcc atgtggacac cctgtttgaa
     1621 accagaaaaa atatccagtc tgaagatttt ttccggaaca tatgttttta cagtataacg
     1681 gaattggtaa ggttcatcgc ttctgtgcag gtaaacaaac caatatgtgt cagctcgttt
     1741 aggttgtttg ttcagaagtg aaaaaatgat cttgctttcc atatcattcg gatatttggc
     1801 ccgggtaaca tatactagat gagtagcaaa cttggggatg gtttcatctt tgcttattct
     1861 gttgaggtca gccaccactg gtgcgattgg ttcataggta acacaacggt ttttaatacg
     1921 tcggccgtta taccaaatgt acataactga gaataatgca cctgcaataa gaatcgtagc
     1981 aaaaccaccg tgagcaaact taaacatgtt ggcaatgaag aatgaacctt caattgtcag
     2041 gaaaaacatt gtcataggga tgctatacca catttttctt ttcagatggt gtaaatagat
     2101 aaaaagtaat agtgtggtca tcatcatggt tatggttatc gaaagcccat aggctgcttc
     2161 catgttcgat gaagtctgaa atgccaacac cataactata cacagcacca tcaatgcgtg
     2221 gttgacgcct gggatataca tttggccttt aatttccgta ggatatttaa tttgtatatt
     2281 tggccataga tctaatgaaa ttgcctcgct gataatagta aaagagccac ttattaatgc
     2341 ttggctggca ataattgcag ccaaagttgc cattattacg ccaacgaacg aaaaccattc
     2401 aggcataatt gtgaaaaaag gatttgtgtc tctaacaatc tcagcggagt gggtaattat
     2461 ccatgcacct tgtcccagat aattcatgat taatgagatt ttgacgaaaa tccatgaaat
     2521 gcggatgttg tgaagcccgc aatgccctaa gtcggaatat aaagcttcag cacctgttgt
     2581 acaaagaaaa acagcaccta aaataataaa tgcatttgga acggtcttta aaacaagtat
     2641 tgcataataa ggattaaaag ccctgaaaat ggctgggaat tttataaatg caaacagtcc
     2701 aagtattgca agcattaaaa accataaaaa catgattata ccaaacgatt ttcctaatcg
     2761 agctgttcct agaggttgaa tcagaaaaag aaaaagtaag atggcaattg caaccgccgg
     2821 aataggtatt gatggaatta atgtatttaa tccttcaacc gcagatacaa ctgtaattgc
     2881 tggagtgatg atcccatcgg caagtaaagt tgccgcacca attgcagcta tgtaataagc
     2941 ccatctataa ttcttacgta ccagtgcaaa a
//
LOCUS       DATDNM010000470         2168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1876851, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000470 DATDNM010000000
VERSION     DATDNM010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1876851"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VI413_08020"
     CDS             <1..273
                     /locus_tag="VI413_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEY6914606.1"
                     /translation="LTFESVSMKKISNQKFYLTGNLTMRGVTKPVTLTVTYVGSIENQ
                     MSKKAIFGFHITGSVKRSDYGIGAKTPEAMVSDVVKIVADAEFSKD"
     gene            complement(356..1759)
                     /locus_tag="VI413_08025"
     CDS             complement(356..1759)
                     /locus_tag="VI413_08025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914607.1"
                     /translation="MTNTLSTKEKSVHINLHSKYYGAIAEIGGGQETARHLFQAGGAS
                     NTVAKSISAYDKSFSDHFYNDGNPARYVAEDRLRKMIDYEYNELIKILDKKSSQKFFA
                     FANTVETLNFAKTNQGSGWLGIAVEGTDRYQPNKFLIHVKLHENDTLLQQYSLGALGI
                     NLIHGGLFDWEDPRKVLLSLLDNLDTNRVEVDYIFVEGPDIKWCDNRLLNLQLVSNNM
                     TPAIMFDQSGRVQQPGDMLYRKNVLLMRGYFRPINNLGIEFLEDSLGIFKRDEDYKPD
                     NTIAFCEISLKNLMKNEKLDEKDFLQRVDLLNMMGQSVMVSRFYRYFQLVKYFAQFKM
                     IKLRIVVGLPTFDKIMDSSQYTDLRGGLLEAIGALFQENVKMYLYPYTDMNTGEVIYP
                     EDSHFSNENKLLWQYLNETKKIITLKGIPSQKLKITSDYITKMIESGDDNLIDYVPEK
                     VYQHIKQHKLFGYGKSK"
     gene            1830..2021
                     /locus_tag="VI413_08030"
     CDS             1830..2021
                     /locus_tag="VI413_08030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914608.1"
                     /translation="MFICSKPDSWGLHAATFPACAGKVPEVPASFAARTGSLAASGAN
                     STACSGNLAAHAGYSTALM"
BASE COUNT          571 a          469 c          454 g          674 t
ORIGIN      
        1 ttgacttttg aaagtgtttc gatgaagaaa atctcaaacc aaaagtttta cctcactggt
       61 aatctgacca tgcgcggtgt tactaaacct gttacgctta cagtaacgta cgttggaagt
      121 attgaaaatc aaatgagtaa aaaagctatt tttggttttc atattaccgg ttcggttaaa
      181 cgttctgact atggaatagg tgcaaaaacc ccggaagcta tggtgagtga tgtcgtgaag
      241 attgtcgctg acgccgaatt cagcaaagat taattctcat acactgaata ttgaaaaatg
      301 cagggcacag gtcaacaggc tctgcatttt ttgtatcact atactaaatc aggtgttatt
      361 tgctttttcc gtaaccgaac agtttgtgct gtttgatatg ctggtatacc ttttcgggta
      421 cataatcaat caggttgtcg tctccgcttt caatcatttt ggtgatgtaa tccgatgtaa
      481 ttttgagttt ctgcgacgga attcctttca gggtaataat tttttttgtc tcattcaggt
      541 attgccaaag cagtttattc tcattggaga aatgtgaatc ttcggggtaa ataacctccc
      601 cggtattcat gtcggtgtag gggtacaggt acatttttac attttcctga aagagtgcac
      661 caatcgcttc gagcaagcct ccgcgcaaat cggtatattg tgagctatcc attattttat
      721 cgaaagtagg tagcccaacc acaatgcgta gtttaatcat tttgaactga gcaaaatatt
      781 tcaccagttg aaaatagcgg tagaaccggg ataccatcac gctttgcccc atcatattca
      841 gcagatctac ccgttgtaag aaatctttct cgtcgagctt ttcgtttttc atcaggtttt
      901 tgagggaaat ctcgcaaaat gctatggtat tgtcaggttt gtaatcttcg tcgcgcttaa
      961 aaatacccag gctatcctcc aaaaattcaa tgcccagatt attgattggc ctgaaatagc
     1021 cacgcatgag caatacattt ttacggtaga gcatatcgcc cggttgttgc acgcgccccg
     1081 actggtcgaa catgatggcc ggagtcatgt tgttacttac aagctgcaga tttagcaatc
     1141 ggttgtcgca ccattttata tccggacctt cgacgaaaat ataatccacc tccacacggt
     1201 tggtatccag gttgtcgagc aacgatagca acacttttcg tggatcttcc cagtcgaata
     1261 aaccaccatg aatcagatta atccccaacg cacccaatga atactgttga agcagcgtgt
     1321 cgttttcgtg cagttttaca tgaataagga acttgttcgg ctggtacctg tcagttccct
     1381 caacggctat gcccagccag ccgctgccct ggtttgtttt ggcgaaattg agggtttcaa
     1441 ccgtgttggc gaaagcaaag aatttttggc tgctcttctt gtccagaatc tttatcagtt
     1501 cattgtattc atagtcaatc attttacgca ggcggtcctc agccacatac cgcgccggat
     1561 ttccatcgtt gtaaaaatga tcactgaacg atttgtcgta tgccgatatt gatttggcaa
     1621 ccgtgttgga agctccaccc gcctgaaaca aatgacgggc agtttcctgt ccgcccccaa
     1681 tctcggcaat ggcaccataa tactttgaat gtaaattaat gtgtaccgat ttctcttttg
     1741 tgctcagtgt atttgtcata ttggaactga ttattgcttt tgttttgact gaatcaagct
     1801 aaacttgttc aattctttaa cgggaataat tgtttatttg ttcaaaacct gattcatggg
     1861 gtttacatgc cgcaaccttt ccggcatgtg ccggaaaagt cccggaagtt cccgcaagct
     1921 ttgcggcacg taccggaagc cttgcggcaa gtggtgcaaa ctccacagca tgttccggga
     1981 accttgcggc acatgcgggc tattccacgg cacttatgtg agttttcaaa aacagggttt
     2041 tagtcgaata aattgcctgt tccctctgaa attccattat aataatggca aactttattc
     2101 attatacaaa catcacattt tggattggtt ggtctgcata tttcacgccc taaaaatgag
     2161 agagccat
//
LOCUS       DATDNM010000471         2637 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1128590, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000471 DATDNM010000000
VERSION     DATDNM010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1128590"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VI413_08035"
     CDS             <1..294
                     /locus_tag="VI413_08035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914609.1"
                     /translation="SNASNRFAPLPSLWFNPENEKGFAGTKQWYRKVYEARQSLPNYK
                     IELKALAEAVLEVSTEPTQNNFHYWKNYFIERKTPGLLSLFLITVANQQFQKH"
     gene            298..495
                     /locus_tag="VI413_08040"
     CDS             298..495
                     /locus_tag="VI413_08040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914610.1"
                     /translation="MNNIQLKPYTVLELARLYSVSDRTMKKWIKPFEKEIGEKIGYFY
                     TIAQVKIIFEKLGTPGDFISE"
     gene            637..1680
                     /locus_tag="VI413_08045"
     CDS             637..1680
                     /locus_tag="VI413_08045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914611.1"
                     /translation="MNLSLASNNHYKRDFGIPDLIQPSFKKIFFMKPMYFFIVALLLS
                     FSAVVHAQSPCDAVSVEVIAPQWQTGYYSYFGVRVSLPQPYYQNVTVSGYIFDSPDHE
                     TTDHPYTLTIPAGSLSAETSTDFYQTGPAAEGAANITSVSVCPGDGDAFTMTPVSDPS
                     VTSILSNAFDSLNVDMTKLSTALGLSSTLRKSDINFTNLQLSYANDSDTARAISASFN
                     SNSGSNSVNYSFTVFTDGTNYYNPTIVKSTASDLVYFDLTEGKVTTISNCTSSNFTVS
                     QSTSDYIRSDFGVPCNGQQVMDCVTNVLTQHGWGSVILSTVSLFRPVVGAAVVAACIR
                     YHCIHLVHGPGYL"
     gene            2225..>2637
                     /locus_tag="VI413_08050"
     CDS             2225..>2637
                     /locus_tag="VI413_08050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914612.1"
                     /translation="MLLTLIVCKFAFGQTIINTPLDSAQKIGQTINSHVFKQFSSTSE
                     FLDAAVNSLNSFNALIKKENYRNKITSLNNPTSSDMGFNLESEIQTALKPLLAKAKNT
                     NTNKFSQVVSSLLTIPVKTSSVGLKTAAPAMNPLFT"
BASE COUNT          820 a          575 c          489 g          753 t
ORIGIN      
        1 tccaatgcct ccaaccgttt cgccccgcta ccatcacttt ggttcaaccc tgaaaacgaa
       61 aaaggatttg caggaacaaa acaatggtac cggaaggttt acgaagcaag acaatcacta
      121 cccaactata aaattgaact aaaagctttg gcagaagccg ttcttgaggt gagcacagaa
      181 cccactcaaa acaatttcca ctactggaaa aattatttca ttgaaagaaa aacacccgga
      241 ttgctctccc tatttcttat cacagttgcc aaccagcaat ttcaaaaaca ttaatccatg
      301 aacaacatac aactaaagcc ttacacggtt ttggaactgg caaggctgta cagtgtgagt
      361 gatcgaacta tgaaaaaatg gatcaagcca tttgaaaaag agatcgggga aaagattggt
      421 tacttctata caatagccca ggtaaagata atttttgaaa aactgggcac acccggagat
      481 tttatcagtg agtaattcag aagtgtttgg aaaagttggt cttatttcag aagactttaa
      541 ccaatcactg atttcacgcc ttacacctga cacaattttg acctggcgat tccggaaagc
      601 cgcaaatcaa tcagttcatc tttaaaacaa ttagttatga atttatcatt agcaagtaac
      661 aatcattaca aaagagattt tggaattcct gatctcattc aacccagttt taaaaaaata
      721 ttttttatga aaccaatgta tttctttata gtagcactac tgctaagttt cagtgcggta
      781 gtccatgcac aatccccatg cgatgctgtt tcagttgagg ttattgcgcc gcaatggcag
      841 acaggctatt acagttattt tggagtcaga gtgtctttgc cgcagcctta ttatcaaaat
      901 gtaaccgtca gcggatacat cttcgactcc ccagatcatg aaactacaga tcacccttat
      961 acactgacga ttcctgcagg gtccttatcg gcagagacct cgactgattt ttatcagact
     1021 ggtcctgcag cagagggagc agccaatatt acgtccgtgt cggtttgtcc aggtgacggt
     1081 gatgccttca caatgacccc ggtgtcggat ccgtctgtta cctccatatt atcgaacgca
     1141 ttcgattcat tgaacgtcga tatgacaaag ctcagtacgg cattaggctt gtcttcaacg
     1201 cttcgcaaat cggatataaa ctttacaaat ctgcaattaa gctatgcgaa cgattccgat
     1261 acagcaagag cgatttctgc ctcctttaac agcaattcag gctcaaacag tgttaactac
     1321 agctttacgg tctttacaga tggcacgaac tactacaatc caaccatcgt caagtccact
     1381 gcttcagatc ttgtgtactt tgacttaacg gaaggaaaag tgaccacaat tagcaattgc
     1441 acgtcgagta attttacagt tagccagtca acgagcgact atatacgttc agatttcgga
     1501 gtaccgtgca acgggcagca agtaatggac tgcgtcacca atgttttaac tcaacatgga
     1561 tggggttcag ttatattatc tactgtatca ttattcaggc cagtggtagg cgcagctgtt
     1621 gtagccgcct gcatccgtta tcattgtatt catttggtcc atggaccagg ttacctatga
     1681 aaataacagc cagtccttca aattgaaaga tgtagcagaa atctacagaa aaagcaacga
     1741 gttgttcatg ttgatgagaa actcgttgct ttcaaaaaaa tgtagttaat gagtgcctaa
     1801 aatgaaaggt atttacttta tttgtggcgc agtgtacctg ccatgaaatt cactaaaggc
     1861 accgcgataa atatttcggt gagactacta aaatgaaaaa agttacgacg atacagctcc
     1921 ttgtacttac ctttctttcg ataagctgtg tgcttggttt cggatttttg gtttatagta
     1981 ttgtttacgc accgtcgcaa agttggtata aaaaagatat aatcgcgact ttaattatag
     2041 tttcactttt atttagacta acactttatt gcttcaaatc atttcacttt gattcgaaaa
     2101 agaaactatg attacctgcc cacgctgaag tataggctct gatcgctgtc cacgcgatac
     2161 ttgaaccctc ttgaaattgc acgggcaata aaaatcaaac attagtatgc gaataacatt
     2221 tattatgctg ctcacgctca tcgtgtgcaa atttgccttt gggcagacca ttattaatac
     2281 tccattggat tctgcccaaa aaatagggca aacgatcaat tcgcatgttt ttaaacagtt
     2341 cagctcgact tctgaatttc tggacgcagc cgttaactca ttgaactcct ttaatgctct
     2401 catcaaaaaa gaaaactacc gcaacaagat cacttctcta aataatccga cgagttcaga
     2461 catgggtttc aatttagaat ccgaaataca aactgcgcta aagcctttac tagccaaagc
     2521 gaaaaatacg aacactaata aattttcgca ggtggtttct tctttattaa cgatccctgt
     2581 taaaacttca tcggtcggcc tcaaaacagc agcgcccgcc atgaatccct tatttac
//
LOCUS       DATDNM010000472         2593 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_915926, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000472 DATDNM010000000
VERSION     DATDNM010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_915926"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(171..2432)
                     /locus_tag="VI413_08055"
     CDS             complement(171..2432)
                     /locus_tag="VI413_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HEY6914613.1"
                     /translation="MSLDFKDFHNTFFFADKLASFDPATGKGKISWKRSTLYTRQAFD
                     VNTILPQDLTMLDFPGAAYQQNPELSFTIDFITPRTVRIRMLTTPVEPKPFDSPMLVK
                     EPGKDSSWKYAKTKTGYSYTSAFGKLLIEENPFRIVLMDASGKRLTDTWRWADNDSSQ
                     VKILPFNFIKRGVDNSRAINPVFSLSPNEKIFGCGESFTKLDKRGQKVNLFVTDPQGP
                     ETDQMYKPIPFFMSSRGYGMFMHTSAPVTCDFGNTYVGANKLFMGDEALDLFVFLGEP
                     KDILNEYTEITGKAQMPPLWSFGTWMSRITYFEQKEGYEVAAKLRENKIPSDVIHFDT
                     GWFETDWQCDYKFATSRFLDPQKMINDLKKDGFHISLWQLTYFTPKNKYFPEIIDKNM
                     HVKNLKGEMPYEDAVLDFSNPTTVKWYQDKLAGLLKMGVGAIKVDFGEAAPLEGIYAS
                     GRGGWYEHNLYPLRYNKAVAEVTKATNNENIIWARSAWAGSQRYPLHWGGDAANKDIA
                     MESELRGGLSFGLSGFSFWSHDIGGFVQSSPENLYRRWLPFGFLTSHSRAHGAPPKEP
                     WLYNESFVKAFRTAAEMKYKLMPYVYAQAKQCTEKGLPMVRALFVEFPNDPGAWNVDD
                     AYLFGSDIYVAPLMENTKGRQVYLPGGNWIDYQTGKTYSRGWNEIEAGEIPCIILVRD
                     GAVIPHAKLAQSTDKIDWSNIELIVYGNKSIAKGAVCLPTNNTLVSLILNKKGNSYEV
                     EKGQIEGVKYYIK"
BASE COUNT          712 a          600 c          550 g          731 t
ORIGIN      
        1 caagcaaact atcaagcata acaggatacc ccgttttact ttgtacggca agaccggcac
       61 cttccgtaat actatcaccc acacaggcta cacgaaggat tttttcggaa caactgccta
      121 acacgaggat ggacagaaat aaaattgtaa cttttttcat ttgtctttaa ctatttgata
      181 taatacttca ctccttcaat ttgtcctttt tccacttcgt aggaatttcc ttttttattt
      241 aaaatcaaag atactaaagt attatttgtt ggcaaacaaa ctgctccttt tgcaatcgat
      301 ttatttccat acactatcaa ttctatgttc gaccagtcaa ttttatcggt actttgcgcc
      361 aacttagcat gaggaatgac agcaccatcg cgtaccagaa tgatacaggg aatttcaccg
      421 gcttcaattt cattccaacc acggctgtat gttttgccgg tttgataatc tatccagttg
      481 cctccgggca aataaacttg tcggcctttg gtgttttcca tcagcggagc cacgtatata
      541 tccgagccaa ataaataggc atcgtccaca ttccatgccc cggggtcatt agggaattca
      601 acaaaaagtg cacgtaccat tggcaatcct ttttcggtac actgtttggc ttgtgcgtac
      661 acgtaaggca tgagtttgta tttcatttca gccgccgtgc ggaatgcttt tacaaaactt
      721 tcgttgtaga gccatggctc tttgggcggt gctccgtgcg cccggctgtg cgatgtaagg
      781 aaaccaaagg gcaaccaacg acggtagaga ttctcgggtg aagactgcac aaaaccgcca
      841 atgtcgtggc tccagaacga gaatccgctc aaaccgaacg acaaaccacc acgcaattcc
      901 gattccatgg caatgtcttt gttggcagca tcgccacccc aatgcagcgg gtaacgctgg
      961 ctacccgccc atgcactgcg cgcccagatt atattttcgt tattggttgc tttggttact
     1021 tcagccacag ctttgttgta gcgcaacgga tatagattat gttcatacca accaccacgc
     1081 cctgaagcgt aaataccttc caacggtgct gcttcgccaa agtcaacttt aatagctcca
     1141 acacccattt tgagcagtcc agcgagcttg tcctgatacc attttacggt agttggattc
     1201 gaaaaatcaa gtacggcatc ttcgtatggc atttcacctt ttaggttttt gacgtgcata
     1261 tttttgtcaa ttatttcagg gaaatatttg ttcttcggcg tgaaataagt caactgccat
     1321 agtgaaatgt ggaaaccgtc ctttttcaaa tcgttgatca tcttttgcgg gtccaaaaaa
     1381 cgtgatgttg caaatttgta atcgcactgc caatcggttt caaaccatcc cgtatcgaag
     1441 tgaatcacat ccgaaggaat cttattctcg cgcaatttgg ctgccacctc atatccttcc
     1501 ttttgttcga agtaggtaat gcggctcatc caggtaccaa acgaccaaag cggaggcatt
     1561 tgcgcttttc cggtaatttc agtgtattca ttcagaatgt cttttggctc acccaaaaac
     1621 acaaacaaat ccaaagcttc atctcccata aaaagcttgt tggcacccac gtaagtattc
     1681 ccgaaatcgc aggttacagg cgcagaagta tgcataaaca taccgtaacc gcgactgctc
     1741 ataaagaacg gaatcggttt atacatttgg tcggtttccg gaccttgggg atcggtaaca
     1801 aagaggttta ctttctgtcc gcgtttgtcg agctttgtaa acgactcacc gcaaccgaat
     1861 atcttttcat tgggggaaag agaaaataca ggattgattg cacgactgtt atccacacca
     1921 cgtttaataa aattgaaagg tagaattttt acctgcgacg agtcattatc tgcccagcgc
     1981 caggtatcgg tcaatcgttt gccactagca tccatcaaca caatgcggaa cggattttct
     2041 tcaatcaaca gtttgccaaa tgcactggtg tagctgtaac ccgttttggt tttggcatat
     2101 ttccacgaac tgtctttgcc cggctctttc accagcatgg gcgaatcgaa gggttttggc
     2161 tcaacaggtg tggtaagcat gcggatgcga acggtgcggg gagtgataaa gtcaatagta
     2221 aaactcagct ccggattttg ctgataggcc gcccccggga agtcgagcat ggtgaggtct
     2281 tgcggcaaaa tggtattgac atcaaaggcc tgacgggtat aaagcgtaga gcgcttccaa
     2341 ctgatttttc ctttacccgt ggcagggtca aaacttgcca gcttatctgc aaagaaaaag
     2401 gtgttgtgga aatctttgaa gtcgagactc atatccaccg gatcgccaag aatacgactt
     2461 tgactttgga caagagagaa tgaactgatg gcgaacagaa aaaagaaaga gaagataatt
     2521 tgttttttca ttttatgcat tgttttaagg aacaatgcaa aagtagcgga tttttacgaa
     2581 aaaaagctgc tca
//
LOCUS       DATDNM010000473         2818 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1128671, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000473 DATDNM010000000
VERSION     DATDNM010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2818
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1128671"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1452)
                     /locus_tag="VI413_08060"
     CDS             complement(<1..1452)
                     /locus_tag="VI413_08060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY6914614.1"
                     /translation="MWNKIRTLLGIVGEFVKILLVKFFTQLPVWWSKFIVWRKARHQR
                     FRNLVWYRKIANLFISSIVLFLIYLFIVDINFLWLFGKSPSMQSISNPEQSEASEIIT
                     ADGKILGKYYHENRTPVTYKEISPILIKTLISTEDERFYQHFGIDFQGIFAAIKDMTK
                     GRSRGASTITQQLVKNMYKTRNQYSTGLFGYVPGLKLIIMKTKEWTTAVKIEIFYSKQ
                     DILTMYFNTVDFGSNAFGIHTAAKTFFNTTPAKLNYEQSATLVGLLKATTTYSPISHP
                     KRSMERRNVVLENLSRHNVITQQQCDSLMKIPIQLNFSVEQTLDGEALHFRAYLDKYL
                     QDWEKETGYDIYSDGLKIYVTIDSRMQKYAEEAVDKQMRVIQKRFFEHWRGQNPWQDE
                     QHKDIVNFVEDIARKTKYYSVLVKKYDKDKDSIDFYLNKPHRTKVFDYKHGEKDTTLS
                     VMDSIRYMNHFMHSSFVAMEPESGQVKAWVGDIN"
     gene            complement(1518..1919)
                     /locus_tag="VI413_08065"
     CDS             complement(1518..1919)
                     /locus_tag="VI413_08065"
                     /inference="COORDINATES: protein motif:HMM:NF016056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DCC1-like thiol-disulfide oxidoreductase family
                     protein"
                     /protein_id="HEY6914615.1"
                     /translation="MNERPVILFDGVCNLCCNWVRFLIREDKKELFLFAQLQSGSAKR
                     MLESFGLNSNDLESVVYIKNNICLQKSAAVLEILTDLGGVWKIVGIFKLIPSVIRDLV
                     YRFVANIRYKAFGKRESCMLPSKKIQKRFLT"
     gene            complement(2064..>2818)
                     /locus_tag="VI413_08070"
     CDS             complement(2064..>2818)
                     /locus_tag="VI413_08070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methionine adenosyltransferase domain-containing
                     protein"
                     /protein_id="HEY6914616.1"
                     /translation="NQPVKVNTIVVSTQHDDFIQPTPDKTQAHVDEQMLAIIREDVKN
                     ILIPRVKALDVQFAQLFKDDFVLHVNPTGKFVIGGPHGDTGLTGRKIIVDTYGGKGAH
                     GGGAFSGKDPSKVDRSAAYAARHIAKNIVAAGLANEVLVQVAYAIGVAKPMNLYVNTY
                     GTAKVQLTDGEIATKIEKLFDMRPKAIEERLKLRFPIYEETASYGHVGRTPVEVTKSF
                     KDGNGREFTQTVELFTWEKTDKVADIKVEFGL"
BASE COUNT          875 a          588 c          456 g          899 t
ORIGIN      
        1 attgatatcg ccgacccatg cttttacttg tccactttcg ggttccatag ccacaaaact
       61 actatgcata aagtgattca tataacgaat ggagtccatt acacttaacg tagtatcttt
      121 ctccccatgc ttataatcaa acacttttgt ccgatgtggt ttattcaaat aaaaatctat
      181 tgagtcttta tctttgtcgt atttctttac taaaacagaa tagtattttg ttttcctggc
      241 aatatcttca acaaagttta caatatcctt atgctgctca tcctgccatg ggttttgtcc
      301 acgccaatgt tcaaaaaatc ttttttgaat aacacgcatt tgtttatcaa cggcctcctc
      361 cgcatatttt tgcatgcgtg aatcaatggt cacataaatc ttcaagccat ccgagtaaat
      421 atcataaccg gtttcctttt cccaatcctg aagatattta tctaaataag cccggaaatg
      481 aagtgcttca ccatctaatg tttgctcaac actaaagttt agctgaatag gaattttcat
      541 tagtgaatca cattgttgtt gtgtgataac attatgtcgg gaaaggtttt caagtacaac
      601 gtttcgacgt tccatcgaac gctttggatg cgaaattgga ctataagtag tagttgcttt
      661 cagaagtccg actaacgtag cagattgttc ataatttaat ttagccgggg ttgtattaaa
      721 aaaggtttta gcggccgtat gaatcccgaa agcattgctt ccgaaatcga ctgtattgaa
      781 atacattgta aggatatcct gcttgctata aaatatctca attttcacag cagttgtcca
      841 ttctttggtt ttcataataa tcagttttaa tccgggaaca tatccaaaca gccccgtaga
      901 atactgatta cgtgtcttgt acatattttt aaccagctgc tgcgtaatgg tgctcgcgcc
      961 acgactacgc cccttagtca tatcttttat tgcagcaaaa atcccctgga agtcaatacc
     1021 gaaatgctga taaaaacgct cgtcctcggt gctgatcaat gtctttatca gaataggcga
     1081 aatttcttta taggtaacgg gggtgcggtt ttcgtggtag tactttccga gtatttttcc
     1141 atcagcagtt ataatttccg aagcttcact ttgttctgga ttacttatac tttgcatgct
     1201 tggcgatttc ccaaacagcc ataaaaaatt aatgtctaca ataaacagat aaatcaaaaa
     1261 caaaacaatg gaagagatga aaagattggc tatttttcta taccaaacca aatttctgaa
     1321 acgctgatgc cttgctttgc gccagacaat aaatttactc caccaaacag gaagttgagt
     1381 aaagaatttc accaacaaga ttttaacaaa ctcaccaaca atgccgagta atgtcctaat
     1441 tttattccac ataatgtttt tcagattttg ggtgcaaagt taaggtaaaa gatggaattt
     1501 tgtatctttt acaccactta ggttaagaat cttttttgaa tttttttaga agggagcatg
     1561 caactttctc tttttccaaa cgctttatac cttatattag cgacaaagcg ataaacaaga
     1621 tcacgtatca cactgggaat caatttaaaa atgccaacta ttttccacac tccacccaga
     1681 tctgtaagaa tttccaatac agctgcagat ttttggaggc aaatattatt cttgatataa
     1741 acaacacttt ctaaatcatt tgaatttaaa ccgaaagatt ctaacattcg tttagcactt
     1801 ccggattgaa gctgggcgaa tagaaataat tccttcttat cttcccgaat tagaaaacga
     1861 acccaattac agcacagatt acaaacacca tcaaacaaaa ttaccggccg ttcattcata
     1921 attaatatca agttgaataa aaaggtatta cgtattgctt agaacgaaca aaacagttca
     1981 aatgttttgc aaaaaaaaca cccgacttac aaagtaaatc gggtgctctt agaaatttat
     2041 ctatcattta atcctaaatc agattaaagt ccgaattcaa ccttaatgtc agcaaccttg
     2101 tctgttttct cccaggtaaa caattctact gtctgtgtaa attctcttcc gttaccatct
     2161 ttgaacgatt ttgttacttc caccggcgta cgacctacat gaccataaga agctgtttct
     2221 tcataaatag ggaaacgcaa tttcaaacgc tcttcaatag cttttggacg catatcgaac
     2281 agtttttcta ttttagttgc aatttcacca tcggtcagtt gcacctttgc tgttccataa
     2341 gtatttacat acaagttcat tggttttgca acgccaatgg cataagctac ctgtaccaat
     2401 acttcattgg ccaaacctgc tgcaacaata ttcttggcaa tatgacgagc tgcgtaagcg
     2461 gcagagcggt caacctttga aggatcttta cctgagaaag caccaccacc atgagcacct
     2521 tttccaccgt aagtatcaac aataatctta cgtcctgtca aaccggtatc tccgtgaggc
     2581 ccgccaatta caaacttacc tgttgggttt acgtgcaaca caaaatcatc tttgaacaat
     2641 tgtgcaaact gaacatcaag agcctttacg cgtggaatca atatattttt tacatcctcg
     2701 cgaataattg ctaacatttg ttcgtcaaca tgagcttgag ttttgtctgg cgtaggctga
     2761 ataaaatcat catgttgagt agaaacaaca atagtattca ccttaaccgg ctgattat
//
LOCUS       DATDNM010000474         4821 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1555819, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000474 DATDNM010000000
VERSION     DATDNM010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4821
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1555819"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1871
                     /locus_tag="VI413_08075"
     CDS             <1..1871
                     /locus_tag="VI413_08075"
                     /inference="COORDINATES: protein motif:HMM:NF019368.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004559 - alpha-mannosidase activity
                     [Evidence IEA];
                     GO_process: GO:0006013 - mannose metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 38 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914617.1"
                     /translation="LERAGNKIKLLFMAQLPSAGMAVYDVRETAAAKVAGGLAVTNNS
                     LENAYYKVKLAANGDVLSIFDKKASKELLSKPARLEFQQEQPQAWPAWNMDWNDRQKA
                     AVDFMDKDAVISIAEQGPVRVTLKVQRKGQNSEIVQYYSLSAGEAGKRLEVSNKIDWQ
                     SREVCLKASFPLAVSNEKATYNLGVGTIARGNNDEKKFEVPSKEWFDLTDKSGKYGVS
                     ILEDCKFGSDKPDNNTLRLTLLYTPKSTAHGGWFIYQSTQDWGIHDVKYAVYGHSGDW
                     AKAESPWQAKFFNQPLIAFEAPKHAGELGRAFSMISINNPQAGLMALKKMENADYYVV
                     RVNELSGKDLKAVKLTFPAAVADAYEVNGQEQRIGNATVSNGQLQFDLSHYTIRSFAV
                     KLKPAASQPAMAQASVALPYNADVISSDSNRGDGNLNDGQSIPAELLPAVVQSEDIRF
                     EMGSKVDEQRNAVSCNGQTIDLPAGKYSKLYLLATANHDISADFAVDGQTTKLAIQQW
                     TGYVGQYYNRILSRDRNSVVEMEKPFVKTDNIAWFASHCHNEYPMKNEAYQYCYLYKY
                     EIAIPVGAKTLTLPKETGIKVLAMTVAAPKADDLQPLQPLYDNFKGNPDFVLRAQK"
     gene            2257..3858
                     /locus_tag="VI413_08080"
     CDS             2257..3858
                     /locus_tag="VI413_08080"
                     /inference="COORDINATES: protein motif:HMM:NF039744.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6377 domain-containing protein"
                     /protein_id="HEY6914618.1"
                     /translation="MKKLLTFCLLSVISFSVFAQHNYDSLLNVLDKTIDNYQIYSNQK
                     EARLLKKKRQLQTNAPDVRKFEICAQLYDEYKFYQYDSAMVYANNTYQYAERLNDRYY
                     LAIARMKQADIMGLNGMFREAMDFLKQVDIRGYDDLKATYFQVYRSVYFSNGNYLLSE
                     AEKSRFMKQADAYTDSTLTVELPNDSRSVLIKSEKLREIKKDNEALKLLLDYYYNNQA
                     DIHTRGIFAYYIASAYLTQKNQELEKYWLTVSAIYDLQSATKEYISLRNLALILYKNG
                     DADRAYKYIKRALDDALFCNARQRTYTISEVMPVIDKAYQGQIAARQRQLVISLASIS
                     LLTLFLLIAIAFVYKQMRKLSVARKKLSQANEQLKSANKILLETNLIKEEYIGRYMDQ
                     CSVYIDKMDNYRRLLNKTASSGKMEDLLKTIKSKQFIEDELKEFYHNFDATFLQLFPN
                     FVKDFAELLVDDEYIQLKPGQLLNTELRIYALMRLGIDDGVKISHFLRCSSSTIYNYR
                     TKIRSKAINHRDEFEAKVLLIGSSN"
     gene            3943..4614
                     /locus_tag="VI413_08085"
     CDS             3943..4614
                     /locus_tag="VI413_08085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914619.1"
                     /translation="MTTAKSFPNTIQKVLNVSTNMNTTMKKVFTVQKLQINRLLFIII
                     ALTVVSVSCNKQSSGFVLQNFEISNHKLDSIISLYTKHNVEIDNDKQKVIVLEFLIRD
                     SLPEFWFSIHGKDELRDHYIFHYNTRIIGYLTRNNCQIILLSRINFKDQFESTFCKFI
                     YPTEKKERIEYLFFPDNQYMMYEEIEIPGRGLVKLSRWPVDNIPYTYSYYKLKYINNE
                     FVNCR"
BASE COUNT         1552 a          906 c         1062 g         1301 t
ORIGIN      
        1 tattggaacg tgccggaaat aaaatcaaat tgctgttcat ggcccagtta ccttcggccg
       61 gtatggcagt ttacgatgtg cgtgaaactg ctgcagcgaa agttgccggc ggattggccg
      121 taaccaataa ctcgttggaa aacgcttatt acaaagtaaa actggctgcc aacggcgatg
      181 tacttagtat ctttgataaa aaagcttcga aagaattgtt gtcaaaaccg gcacggttgg
      241 agtttcaaca agaacaacca caagcctggc cagcctggaa tatggactgg aatgaccgtc
      301 agaaagcggc agtcgatttt atggataaag acgctgttat ctccattgcc gagcagggtc
      361 cggtgcgtgt aacgttgaaa gtgcaacgca aaggacaaaa ctcggaaata gtgcaatact
      421 atagcttgtc ggcaggtgaa gccggaaaac gattggaagt ttcgaacaaa attgactggc
      481 aatcgcgcga agtttgtctg aaagcttctt tcccattggc cgtgtcgaac gagaaagcta
      541 cctataactt gggcgtgggt actattgctc gtggaaataa cgacgaaaag aaatttgaag
      601 taccatcaaa agaatggttc gacctgaccg ataaatcagg gaaatatggt gtttccattc
      661 tcgaagattg taagtttggc tccgacaaac cagataacaa cacattgcgg ttgacattgc
      721 tttatacgcc taaatccaca gcacacggag gttggtttat ataccagagt acgcaagact
      781 ggggaatcca cgacgtaaaa tatgccgtgt acggacatag cggcgattgg gcaaaagccg
      841 aatccccctg gcaggcaaaa ttctttaacc agccgcttat tgctttcgaa gctccaaaac
      901 atgcgggtga gttaggccgg gcgttctcca tgatctcaat aaataatccg caggcgggcc
      961 tgatggcatt gaagaaaatg gaaaatgccg attattacgt ggtgcgtgta aacgagctgt
     1021 cgggcaaaga cctcaaagca gtgaaactta cattcccggc cgcagtagcc gacgcgtatg
     1081 aagtgaacgg gcaggaacaa cgaatcggaa acgccactgt gagcaacgga caacttcaat
     1141 tcgatctgag ccactatacc attcgcagtt ttgccgtaaa attaaaacct gcagcttcgc
     1201 agccggcaat ggcacaagct tcggtggcac tgccatacaa tgcggacgtg atcagttcgg
     1261 attcaaaccg tggcgatgga aatttgaatg atggacaatc cattcctgcc gaattgcttc
     1321 ctgctgttgt gcaaagcgaa gatatccgtt tcgaaatggg aagcaaagtg gatgaacaac
     1381 ggaatgcagt aagttgtaac gggcaaacca tagatttacc tgccggtaaa tacagtaaat
     1441 tgtacctgtt ggcaactgcc aaccatgata tcagtgctga ttttgctgta gacggacaaa
     1501 ccactaaact tgccatccag caatggacag ggtatgtcgg acagtactat aaccgtatcc
     1561 tgagccgcga ccgcaactcg gtggttgaaa tggaaaaacc atttgtaaaa acagataata
     1621 ttgcctggtt tgcgtcgcat tgccacaacg aatatcccat gaagaatgag gcttatcaat
     1681 actgctatct gtataaatat gagatagcta ttcctgtagg agcaaaaacg cttacattgc
     1741 caaaagaaac cggaattaag gtgttggcaa tgaccgtagc agctcccaaa gccgatgatt
     1801 tgcagccatt gcaaccgctt tatgataact ttaagggaaa tcctgacttt gtgcttcggg
     1861 cgcaaaaata aagatgctat ttttagaaca caaagggctg acggtaattc gtcagccttt
     1921 tgtatgttta tgaaaagtgg tgtgaataaa caaaggtact gtccaaaata acggtgtaaa
     1981 taaaaagatt ggttgcagta ttacatagtg ccccgaatag aattgtgcag aaggtgaatg
     2041 gcagttttga gtttgtgaaa aatacagggg caaaagtttt gtatcgcatc gccatttagt
     2101 tatatttgca acaaattaat ctgagaatat ttcctgagaa gtggaggatg ctattccagc
     2161 caatggaagg tacttgacca ccctaaagaa gatacttgcg gaaacactcc acagctgata
     2221 cttcatttgt aagtagcaat gataaccctg aataaaatga aaaaattatt gacattttgc
     2281 ttgctatcag ttatttcctt ctctgttttt gctcaacaca attacgattc gttattaaat
     2341 gtattggaca aaacaataga taattaccag atatattcca accaaaaaga agcgcggctg
     2401 ctcaaaaaga agcggcagtt gcaaaccaat gcaccggacg ttcgaaaatt tgaaatctgt
     2461 gcacaattat acgatgaata taaattctat cagtatgatt ctgcgatggt ttatgcaaac
     2521 aatacgtacc agtatgccga aaggttgaac gacaggtatt atctggcaat agcccgtatg
     2581 aaacaggccg acatcatggg gttgaacggc atgtttcgcg aagcgatgga ttttttgaaa
     2641 caggtagata tcagggggta tgacgatctg aaggcaacgt attttcaggt ttatcgctcg
     2701 gtttattttt cgaatggcaa ctatttgctc tcggaagcgg aaaagagcag attcatgaaa
     2761 caggcagatg cgtatacaga ttctacgctg accgtagaac tcccgaatga tagccggtct
     2821 gttctgatta agtcggaaaa actcagggag ataaagaaag acaatgaggc tctgaagctt
     2881 ctgctggatt attattataa caatcaggca gacatacata cccggggcat ttttgcctat
     2941 tacattgcgt cggcttatct tacccaaaaa aatcaggaac ttgagaaata ctggctgacg
     3001 gtttcggcca tttatgatct tcaatcggct acaaaagaat atatctcctt gcgcaacctg
     3061 gctttaatat tgtacaaaaa cggggatgcc gacagagcct ataagtatat aaaacgggcg
     3121 ctggacgatg ccttgttttg taatgcgcgg cagcgaacat ataccatatc ggaagtgatg
     3181 ccggtaattg acaaagcata tcagggtcaa attgcagcgc gccaaaggca actggtcatt
     3241 tcgctggcaa gcattagcct gctaacgttg tttttgttga tagccattgc gtttgtttat
     3301 aagcaaatgc gcaaactttc cgttgcccgg aaaaaactga gccaggctaa cgaacagttg
     3361 aagagtgcca acaagatact gcttgaaacc aatctgatta aagaagaata cattgggcgg
     3421 tatatggacc aatgttcggt atacattgat aaaatggata actacagacg cttgcttaac
     3481 aagactgctt cttcggggaa aatggaagat ttactgaaaa ccatcaaatc gaaacagttt
     3541 attgaagatg agctgaaaga attttatcac aacttcgatg ccactttcct gcaactgttt
     3601 ccaaactttg taaaagattt tgccgaatta ctggtcgacg atgaatacat tcaactaaag
     3661 ccgggccagt tgctgaatac ggaattgcga atttatgccc ttatgcgatt aggaattgat
     3721 gacggggtga agatatccca ttttttgcgt tgctcgtcgt ctaccattta taattaccgg
     3781 acaaaaataa gaagcaaagc cattaatcac cgcgatgaat tcgaagcaaa agtgttgctg
     3841 ataggatctt ctaattaatg gctacgaagg ttagaaccat tcgctgaaca gcggatacta
     3901 caaactacgc tgaacggggg acaaaatgga gaatttggtg atatgaccac agctaagtca
     3961 tttcctaata ctattcaaaa agttttaaat gtttcaacca atatgaatac tacaatgaaa
     4021 aaggtgttta ccgtacagaa actgcaaata aataggctac tgtttattat catagcttta
     4081 acagttgttt ctgtaagttg taataagcaa tcaagtggtt ttgttttaca gaattttgag
     4141 atttcaaacc ataaacttga ttcaataata agcttatata caaaacataa tgttgaaata
     4201 gataacgata aacaaaaagt tattgtactc gaatttctga ttagggactc acttcctgaa
     4261 ttttggttct ctattcatgg aaaagatgaa ttaagagatc actatatttt tcattataat
     4321 acaaggatta ttggttattt aacgaggaat aattgtcaaa taattttatt gtcgagaatt
     4381 aatttcaagg atcaatttga gtcaactttt tgtaaattta tctatcctac tgaaaaaaaa
     4441 gaaagaattg aatacctttt cttcccagat aatcaatata tgatgtatga ggaaatagaa
     4501 attccaggaa gagggttagt caaacttagt agatggcccg tagataatat tccttatact
     4561 tatagttatt acaaattaaa atacataaat aatgagtttg tcaactgtcg ataagctttt
     4621 tcatcagatg ttgtaacttt atagtgagtg tttagcgtaa gtcccctgtt cagccggata
     4681 tgttattgat taaatgagta aagttcacgt aatggttagc taatatgtta taacgttcct
     4741 tgttcggcga agcgtcacgc ttcgtcgcag caaaaagccg gcctctggct ggcatattca
     4801 tgtagtaagt aatagataga a
//
LOCUS       DATDNM010000475         2595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1343336, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000475 DATDNM010000000
VERSION     DATDNM010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1343336"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..>2595)
                     /locus_tag="VI413_08090"
     CDS             complement(39..>2595)
                     /locus_tag="VI413_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007838189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 78 protein"
                     /protein_id="HEY6914620.1"
                     /translation="SQGIRYTRSPIYGNNSQLQWGKTYTWRVRITDEKGNNSNWSDWA
                     IFRTAPALKLTSGDLGGIWIGAIRTDSAHIPAGKRFLSWEMGAPEYKAVWKNIDSVSR
                     KSILLRKPFSVTKQITEAITYICGLGHYELTINGKKVGDSEFAPFWSDYDKTIYYNTF
                     DITSYLKKGENVVGVLLGNGFFNAQGGRYSKLKVSFGAPTLFFKTIIRYSDNSIEEIV
                     SDKSWKYAFSPITFNDIYGGEDYDARLEQKGWDKAGFNDKSWKPVVVQDPPKGKLEPQ
                     QGYPVKIMERINFDKKKIAYLYKDSLNKLTKTPPLGGRGGSAMVFDMYQNLAGFPEIT
                     VSGKKGDRITLFVGESVTPEGTVDQRQTGRPHFYTYTLKGNGEETWHPRFSYYGFHYI
                     QVEGAVLKGDKNLRKLPVLNNIKSCFIYNSAPKISSFECSNELFNKTHVLIQKAVESN
                     MQGIITDCPQREKLGWAEQLHLNGPVLMYNYKLEAFLPKIIQDLADAQQPNGMIPTIA
                     PMYNIFGSKNGFDDFGDSPEWGSSFLILPKMYREFYGDSSLIVNNYSNMRRYVDYLSS
                     RANDHILSFGLGDWYDYGNFRAGFSRNTPVPFVATAYYFYDLKLLAEYAAMVGNAYDQ
                     QYYFRLAEEVRQAINTKFFKTETNQYATGSQTANALAVYMNIVEPENRQAVLNNLVKD
                     IKVHGNRLTTGDIGNRYLFQTLAENNLNELMYTMFNHEEAPGYGFQLKFGATTLTEQW
                     DPRQGASWNHFMLGQIDEWFFGSLAGIQTDPKNPGMQHFIIKPEPVGDLKFVKASTQT
                     LYGKVAVDWKRDADKFTLQVVIPANCTADIYLPGEKEPKKVSGGTYTFEKIIQ"
BASE COUNT          674 a          589 c          547 g          785 t
ORIGIN      
        1 taacttttcc aaagttctaa actttggaaa agttatagtt attgaattat tttttcaaat
       61 gtgtaagttc cgccgctcac tttcttcggt tctttttcgc ccggtaaata aatatctgca
      121 gtgcaatttg caggaatgac aacctgcaaa gtaaacttat ctgcatcccg tttccagtcc
      181 acagccactt ttccatacaa tgtttgggtg gaagctttta caaatttcaa atcgccaacg
      241 ggttcgggtt tgataatgaa atgctgcatt ccaggatttt tcgggtcggt ttgaatgccg
      301 gctaacgaac caaagaacca ttcgtcgatt tgccccaaca taaagtgatt ccatgaggca
      361 ccctgacgcg gatcccattg ttcggtaagc gtggtggcgc caaatttcag ctgaaagcca
      421 taacccggcg cttcttcgtg attaaacatg gtgtacatca actcgttcaa attattctct
      481 gccaaagtct ggaacaaata ccggttgccg atgtcgccgg ttgtgaggcg attgccatga
      541 actttaatgt cttttaccaa attattgagc accgcctgac ggttttcggg ttcaacaata
      601 ttcatatata cggccagtgc attggctgtt tggcttccgg tagcgtactg gttagtttca
      661 gttttgaaga attttgtatt gatagcctga cgaacttcct cggctaaacg gaagtagtat
      721 tgttggtcgt aagcatttcc aaccatagca gcatattcgg ccagcagttt caggtcgtaa
      781 aaatagtagg cagtagccac aaacggaacc ggcgtattgc gcgaaaaccc ggctcggaaa
      841 ttaccgtaat cgtaccaatc gcccagtccg aatgatagta tatggtcgtt ggcgcgacta
      901 ctcagataat cgacatatcg gcgcatgttg gagtaattgt tcacaatcag gctcgaatcg
      961 ccgtaaaact cccgatacat tttcggtaaa atcaggaacg agcttcccca ttctggcgaa
     1021 tcgccaaagt cgtcgaaacc gtttttactc ccgaaaatgt tgtacatcgg cgcaatagtc
     1081 ggaatcatgc cgttgggttg ttgtgcatcg gccaaatcct gtattatttt aggcagaaaa
     1141 gcttccagtt tgtaattgta catcagcacc ggaccattga gatgaagttg ctcagcccaa
     1201 cccagttttt cgcgctgcgg acaatcggta attataccct gcatattgct ctcaacggct
     1261 ttctgaatca agacatgtgt tttgttgaat agttcgtttg agcattcgaa actggaaatt
     1321 tttggagccg aattataaat aaagcaggat tttatattat ttagcaccgg aagtttacgc
     1381 aaatttttgt cgcctttcag tacagcacct tccacctgga tgtaatgaaa accgtagtag
     1441 gaaaagcgcg gatgccaggt ttcctcacca ttgcctttca gcgtgtaggt gtagaaatgc
     1501 ggacgaccgg tttggcgttg gtcaacggta ccttcgggag ttaccgattc accaacaaac
     1561 agagtaatac gatcaccttt tttcccggaa acggtaattt ccggaaatcc ggctaaattt
     1621 tgatacatat caaaaaccat ggccgagccc ccccgacccc ctaaaggggg agttttggtt
     1681 agcttattta aactatcctt gtatagatat gctatctttt ttttgtcgaa atttattcgt
     1741 tccataatct ttaccggata accttgctgc ggttctaatt tcccttttgg aggatcctgc
     1801 acaactaccg gcttccagct tttatcatta aagccggcct tgtcccaacc tttttgttcc
     1861 aaacgggcgt cgtaatcttc gccaccgtaa atgtcgttga aggtaatcgg gctgaaagcg
     1921 tatttccagc ttttgtccga aacaatttct tcgatagaat tatcgctgta gcgaatgatt
     1981 gttttgaaaa acaatgttgg tgcaccaaac gaaactttca gcttgctgta gcgaccgccc
     2041 tgcgcattaa aaaaaccatt ccccaacaaa accccaacca cgttttctcc ttttttcagg
     2101 taagaagtga tgtcgaaagt attgtaatag attgttttat catagtcgct ccaaaaaggt
     2161 gcaaactcac tgtcgcccac ttttttgcca ttgatagtca gttcgtaatg gcctaaacca
     2221 cagatatagg tgatagcttc ggttatttgt tttgtgacgc taaaaggttt tcgcaacaag
     2281 atacttttac gggaaactga atcgatgttt ttccaaacgg ctttgtattc gggcgctccc
     2341 atttcccagc ttaggaaacg tttcccggca gggatgtgag ccgagtcggt tcggatggcg
     2401 cctatccaaa tgccacctaa atcacctgaa gtaagcttca atgctggtgc tgttcgaaat
     2461 atcgcccaat cactccaatt tgaattattc cctttttcgt cagttatgcg gacacgccag
     2521 gtatatgttt ttccccattg taattgagag ttattgccgt aaattgggct tcttgtatat
     2581 cttattccct gactt
//
LOCUS       DATDNM010000476         3202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_169146, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000476 DATDNM010000000
VERSION     DATDNM010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3202
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169146"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..418)
                     /locus_tag="VI413_08095"
     CDS             complement(<1..418)
                     /locus_tag="VI413_08095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914621.1"
                     /translation="MNLKKYVFLLAIGFLFAGCDGLFNNTRKIEIKGRIAKSDNVSAM
                     KVKTESAYTLADAKKALIFYGNEYNLVEISSNGSFSGKAPVGSATVVAFLTADNQFIG
                     NLFAGGMNVLPLVGLADDLSTIDLSTLTLDGTRVIPA"
     gene            complement(811..3036)
                     /locus_tag="VI413_08100"
     CDS             complement(811..3036)
                     /locus_tag="VI413_08100"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEY6914622.1"
                     /translation="MNINSYTQMKLSIIKHGVLVIFICTLVVNPTVLIAQKKINQSGN
                     SILLSKADLSYHDLKYSVAAGYYEAYLKDGVTSPNNVLSKLADCYWQMRNYEDALRVY
                     KVLYPNGNKDVSDQVKLRIGELYARSGHYSEAAKWLTGVSGYQSKTNAYNSKEVLNAM
                     KKDSANWKLGFLNINTPYREFSPSFVDSTLIFSSNKPLLVQAKSFGWDGSNFAHLWRI
                     PVSNIGTMSPNSLNKIDSKKTVTGQSSQTLADVYECGDTKSDANIRRTLVSPAYLSAD
                     KNAIGAIVPGFDKMKFNAGAIAIDQNHHFYFSANYDKPDKEGINRIRLMEGVYSDAGV
                     TSIHSLPFGDVNSYSVMHPAINRDGTLLVFCSDKVSGNGGYDLYYAKRQGLNQPWSPA
                     KAFSDKVNTAGNEVFPSITADNYLYFSSDAIPGLGGLDIFKLPLEAAVEGVSTPVHVS
                     YPVNSAADDFGWAQGDGIGLNAFFTSDRLNSNDNLYSVTYFAPRKSFIEGYVLDKATL
                     KPVKDATVFLYSKQEDSVYVAKTDASGKYHFPVLITTDVVIKAVEKTTINDCLSAGIM
                     YDPQAKDTIQTAPRDLLLDYKVGFAWKLSNIHYDFNKFAIRPDAAQILDTLVAFLKQH
                     PIKVELGSHTDARGSFSYNERLSQQRAEAAVAYLVAHGVDSKLIIAKGYGEYQLLNKC
                     ADGVKCSERDHQSNRRTEVKVPGFIAPQTELENIDLDKFKAGQKINKNMLPNDFFDTC
                     K"
     gene            complement(3059..>3202)
                     /locus_tag="VI413_08105"
     CDS             complement(3059..>3202)
                     /locus_tag="VI413_08105"
                     /inference="COORDINATES: protein motif:HMM:NF023179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IX secretion system membrane protein
                     PorP/SprF"
                     /protein_id="HEY6914623.1"
                     /translation="SPQFRLGYAYDYLISNLKTYTKGTHELMLRYEFAPAKTQRILSP
                     RYY"
BASE COUNT         1007 a          673 c          554 g          968 t
ORIGIN      
        1 tagcaggaat aaccctggtt ccatccaatg tcagtgtcga caaatctatg gtactcaagt
       61 catctgcaag tcccacaagc ggcaacacat tcatgcctcc tgcgaacaga ttaccgataa
      121 attgattgtc ggcagtaaga aacgcaacaa ccgtggcgct tccaaccgga gcttttcctg
      181 aaaatgaacc attgctacta atttccacca gattatattc attgccgtaa aatatcagag
      241 ccttttttgc atcagccagt gtgtaagcac tttccgtctt tactttcatc gccgacacat
      301 tgtcggattt tgcaattcgt cctttaattt caatctttcg ggtgttgtta aacaacccat
      361 cgcaaccggc aaaaagaaaa ccgatagcga gcaagaaaac atactttttc aggttcatgg
      421 cgattttagt ttttaaatta tgaaattata tatcaggatt ctgtttcacc caacaaaaac
      481 ggtattatga atcaggggaa aagagctatt gattcggaaa agaagctgag ggaacaacta
      541 ttttcatggt atttcgtcag agtttagggt gctgactccg cacttcctga gaattaaact
      601 atataattta aaatcaagga ataacaatca aaaagcaagc gtatttgata gtacaaatat
      661 ggggatattc aacaaaactg tttacatata ttatgttata tttacacgtt cagattaaaa
      721 aaaagattct tgattattta accgttaaat acacaaataa aaactcctca aaccgagttg
      781 atttgaggag ctaaaatcta tttttagtag ttatttacac gtatcgaaaa aatcgttggg
      841 caacatgttt ttattgattt tctggcctgc tttaaatttg tccaaatcga tattctccaa
      901 ttctgtttga ggagcaatga aacccggcac ttttacctct gtacgacggt ttgattgatg
      961 atctctttca gaacacttca caccgtcagc acatttgttg agcaactgat actcaccata
     1021 ccctttagca ataatcagtt ttgaatcaac accatgagcc accaggtatg ccacagcggc
     1081 ttcggcacgc tgttgcgaaa gacgttcatt atagctgaat gagcctcgtg catccgtatg
     1141 agaacctaac tccactttaa ttggatgttg cttcaaaaat gcaaccaaag tatccagtat
     1201 ttgagcagca tccggccgaa tagcaaattt attgaaatca taatgtatgt tgctcagctt
     1261 ccatgcaaaa ccaactttat agtcgagaag caggtcgcgt ggagctgtct gaattgtatc
     1321 ttttgcttgc ggatcataca taatacccgc cgacaaacaa tcatttatag ttgttttttc
     1381 aactgcttta atcactacat ctgtcgtaat caacactggg aaatgatatt ttccactcgc
     1441 atccgttttc gccacataaa ccgaatcttc ttgcttgcta tacaaaaaaa ctgtagcatc
     1501 cttaacaggt tttaatgtgg ctttatccaa aacataccct tcaataaatg attttcgagg
     1561 agcaaaataa gtaacagaat ataaattatc attactgttc agtcggtcag atgtaaagaa
     1621 tgcgttaagg ccaataccat ctccctgagc ccaaccgaaa tcatcggcag cactatttac
     1681 aggataactt acatgaaccg gtgtagaaac tccttctaca gcagcttcta acggcagctt
     1741 gaatatatcc aacccaccta acccgggaat ggcatcgcta ctgaaataca aataattatc
     1801 tgcagtaatg cttggaaaca cttcattacc ggcagtattt actttatcac taaatgcttt
     1861 agcaggactc caaggttgat taagcccctg acgtttggcg taatacaagt catagccacc
     1921 attaccgctt accttatcac tgcaaaatac cagcaaagtt ccgtccctat taatggccgg
     1981 atgcataacc gaatatgaat ttacgtcgcc aaatggtaat gaatgaattg atgtaacccc
     2041 ggcatcggaa taaacgccct ccatcaaacg gatacgattt atgccttctt tatcgggttt
     2101 atcgtagttg gccgagaaat aaaaatgatg attttgatca atagcaatag caccggcatt
     2161 aaacttcatt ttatcaaatc ccggaacaat tgccccaatt gcatttttat ctgcacttaa
     2221 ataagccgga cttacaagtg tacgtctgat gttagcatca gactttgtat cgccacattc
     2281 ataaacatcg gccagcgttt gtgagctttg tccggttacc gtttttttag aatcaatttt
     2341 attcaacgaa tttggagaca ttgtaccaat attcgaaaca ggaattctcc acaaatgagc
     2401 aaaattactg ccgtcccagc caaatgactt tgcttgtacc aaaagtggct tattactact
     2461 aaaaatcaat gtactgtcaa caaaagaagg ggaaaactcc ctgtaaggcg tattgatatt
     2521 taaaaagcca agcttccagt tagcagaatc tttcttcatt gcattcaaga cttctttact
     2581 attgtaagca ttggttttag actgataacc gctaactccc gttaaccatt tagcagcttc
     2641 tgagtaatgt cccgaccgcg cgtaaagctc acctatacgc aatttcacct ggtcagagac
     2701 atctttattt ccattcgggt acaagacctt ataaacacgt aatgcatctt cgtaatttct
     2761 catttgccaa taacaatcag ccaattttga aagcacgtta ttgggtgagg taaccccatc
     2821 tttcaggtaa gcctcataat agccagctgc aactgaatat tttaaatcat gatatgaaag
     2881 gtcagctttg cttaataaaa ttgaatttcc ggattggttg atcttttttt gggcaatcag
     2941 cactgttggg tttacaacta aagtgcaaat aaagattaca agaaccccgt gttttattat
     3001 ggatagtttc atttgggtat aactatttat attcatttta ttcacaatta tttaaacatt
     3061 aataataacg aggagataaa atgcgttggg ttttggcagg agcaaactcg taccttaaca
     3121 ttaattcatg cgtacccttt gtataagttt tcagatttga aattaaataa tcataagcgt
     3181 acccaagccg gaattgcggt ga
//
LOCUS       DATDNM010000477         4942 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_809358, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000477 DATDNM010000000
VERSION     DATDNM010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4942
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_809358"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..585)
                     /locus_tag="VI413_08110"
     CDS             complement(<1..585)
                     /locus_tag="VI413_08110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008025703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6914624.1"
                     /translation="MNEYRILVVDDEEDLCEILQFNLENEGYKVDVAYSAEEALVKDI
                     ASYSLLLLDVMMGEISGFRMARMLRENPKTAKTPIIFLTAKDTENDKLTGFALGAEDY
                     IAKPFSIREVAARIKAIFRRSEAMQPEAQSDISFENLEINLSKKKVLLNNVEIPFTKK
                     EFEILKLFLENRNRVFSRDEILSRVWSDEDGVLNR"
     gene            complement(804..1148)
                     /locus_tag="VI413_08115"
     CDS             complement(804..1148)
                     /locus_tag="VI413_08115"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6914625.1"
                     /translation="MKKVMFIAIAAMLLINLNTSAKGNVSPEVKTEVLEQSTVLKGMV
                     SDKQTQETLAGATITANGQKVYTDLDGNFSISNLCGGKCQVKISLISYKDQTIDIDTN
                     NLQSLQVKLEQR"
     gene            complement(1287..1754)
                     /locus_tag="VI413_08120"
     CDS             complement(1287..1754)
                     /locus_tag="VI413_08120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HEY6914626.1"
                     /translation="MRKLIIPILLFIVVSLQAQTGKIVQSDGLFFTDATQTKLYSGEF
                     KEYYDNGALKLEMNIKEGKPEGAYIVYFANGKPNEVRAYRNGEFHGLWRTYNAAGMLV
                     SEAEYRNNKKHGNWHVWDDSGIMRYEMQYDNGKKTGTWYMWDEKGKLISEKKY"
     gene            complement(1926..3335)
                     /locus_tag="VI413_08125"
     CDS             complement(1926..3335)
                     /locus_tag="VI413_08125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914627.1"
                     /translation="MKKIFLNYAVALFSVTIAVTSCTTANDPAPVLTSKEVVIKTDIT
                     GTRNLVKDSIYVLEGNIFVTGTINIQAGTIIKGDKLTKGALVILQGGKINAVGTAAEP
                     IVFTSRMAPGLRAAGDWGGVILVGKAPVNQSNPTIEGLTKSITYGGGTNPADNSGTLQ
                     YVRIEFAGIALQPDNEINGLTLCAVGSGTTIDHIQVSYSGDDSYEWFGGNVNAKYLIA
                     YCGLDDEFDTDFGYSGHVQFALGVRNSRVADVSTSNGFESDNDASGSVGQPKTKAVFS
                     NVTLIGPWKTPADKNISAMFGAGMHIRRNSSLSAFNSVFAGWNTGLLLDGTSTYANAN
                     DSLTLCIQNCALIGTKVAAVKGAGITDAQALAFYNTTAFGNKIITSNATAVIAANAKD
                     SAGIATSFYDATKTGTAAIPTTFKPAANSPLLSGATYTHAKLQDSFFDKTPAFIGAFG
                     ATDWTKEAWTNFDPQNTIY"
     gene            3584..>4942
                     /locus_tag="VI413_08130"
     CDS             3584..>4942
                     /locus_tag="VI413_08130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914628.1"
                     /translation="MKILPLTIVALSLNIFCVSAQDIKLSLSRGVSTPVSQTADSLSF
                     NPQNITKASVYVPLFRKGWDGVVKGREAAMSFGISLGGGLVSEQAPSTANFNAFGIAG
                     ETTASKLFVHSDETNKKQGYNLEVAPTLNFQLGDFELSPIIGFGYLKTVQHAYTIEQS
                     IATGAYPGYIKIFNRPETTNSGFMISPKFRISYAPGPIGLWVEGDYTAGPEMVSRTYR
                     LVPAGRPGSDGLYKSDQLLAGTATESVHKSSYGSFGVSAGISVSLEKKKKGKPTLGGL
                     DDDCDGLRTVTETYTNENGQVVQRVLKTKTKSNQSNDIVSQDDARTIENNPLYNGNSG
                     NTNPLYDAQNRTGKLSSIKNNPLYNEKLQADNPVYSTQNIAEQQISCGPVTQKTMKPD
                     GTTEEMTFACPDDAIYFNERKGAITVPKLTQGATFGEKVNQGLHAAGGALSQGASLLG
                     GAL"
BASE COUNT         1363 a         1006 c         1048 g         1525 t
ORIGIN      
        1 tctgttcagc accccatctt cgtcggacca aaccctggat agaatttcat cacgggaaaa
       61 aacacggttc cggttttcca gaaataattt caggatttca aattccttct tagtgaaggg
      121 aatttccaca ttgttgagaa gcactttttt ctttgataaa tttatctcga ggttttcaaa
      181 tgaaatatcg gactgcgctt caggttgcat agcttcagag cgcctgaaaa tggcttttat
      241 ccgggctgcg acttcgcgta tggagaatgg tttggcaata taatcttcgg ctcccaatgc
      301 aaagccggtt agtttatcgt tttcagtatc tttggcggta agaaatataa tcggagtctt
      361 agctgttttg gggttttcgc gaagcatacg agccatcctg aagccggata tttcgcccat
      421 cataacgtcg agcaacagca ggctatagct tgcaatatct tttaccaggg cctcctcagc
      481 cgaataggcc acatctactt tatatccttc gttttcaagg ttgaattgaa gaatttcaca
      541 caggtcttct tcgtcatcta caactaagat tctatactcg ttcatggtct gattttgaaa
      601 taatagtatt acaaaataac caaatggtta tttcagtttc gtgtgatagc tgttacaaat
      661 gcattatata agatgtagga atcagggatc aggaatcaat tttttcaatt ttcaatcgta
      721 aatgtgcgga tcaaagtttt gtttataaat cagcagaggc agaaccgtgt ggatctgcct
      781 ctgttaatat agttgcaatc gaattatcgt tgctctaact ttacctgtaa cgattgcagg
      841 ttgttagtgt caatatcaat cgtttggtct ttataagaaa tcaagctgat ttttacctgg
      901 cattttccac cgcaaaggtt agaaatactg aaattaccat ccagatccgt gtacactttt
      961 tgtccgtttg cagtaattgt ggctcctgca agggtttcct gtgtttgttt gtccgaaacc
     1021 attcctttta aaacagttga ttgttccaat acctcggttt ttacttccgg tgaaacgttg
     1081 cctttggctg atgtattcag gttgattaac agcatggcgg caattgcgat aaacattact
     1141 tttttcataa ttgtatagtt ttatttcttg ttttgttctg aattatttat actgcaaagt
     1201 aacaggatag tcgttacaat ttgattacag gccaattaca aagaatatac aacggtgtga
     1261 agtttcatgt cgtttttgcc tggactttag tatttctttt ccgaaatcag ctttcctttt
     1321 tcatcccaca tataccaggt tcctgttttt ttaccgttat cgtattgcat ttcgtaacgc
     1381 ataatgcccg aatcgtccca tacatgccag tttccgtgtt ttttgttgtt gcggtactca
     1441 gcttcagata caagcattcc ggcggcattg taggtacgcc acagtccatg gaattcgccg
     1501 ttgcggtaag cgcgcacttc gtttggtttc ccattggcaa aataaacgat ataagcacct
     1561 tcgggctttc cttctttgat attcatttcc agtttaagtg cgccgttatc gtaatattct
     1621 ttgaattcgc cggagtaaag ctttgtttgg gtggcatcgg taaagaacag gccatcactc
     1681 tgtacaattt ttccggtctg ggcctgtaag gaaacaacaa tgaaaagtag tatgggaata
     1741 attagttttc gcatgataga gttttttatg tttggtagta caaagctatc aaaaattgga
     1801 ttgttataac tgtctgattg aaaatttaat atgtgttaca aaattcgttt tcaagctaaa
     1861 aaagagaagt tacgcatccg taacttctct gtacactatt cttaaaacga atcagtaaaa
     1921 aacgattaat aaatagtatt ctgtggatca aagttggtcc atgcctcttt agtccagtcg
     1981 gtggcaccga atgctccaat gaaagcagga gttttatcaa agaatgaatc ctgtaatttt
     2041 gcatgtgtat atgtagcgcc gcttaacaat ggtgagttgg cagcaggttt aaatgttgtc
     2101 gggatagctg ctgttcctgt ttttgtggca tcgtagaatg aagtggcaat acctgcactg
     2161 tcttttgcat tagctgcgat aactgcagtt gcattcgaag taatgatttt atttccgaaa
     2221 gcagttgtgt tgtagaaagc caacgcctga gcatcggtta tacctgcacc ttttactgcc
     2281 gctacttttg tgccaataag cgcgcagttt tgaatacaca atgtcaatga atcgtttgca
     2341 ttcgcgtatg tagatgttcc gtcgagcaat aaaccggtgt tccagcccgc aaaaaccgag
     2401 ttgaaagctg acaatgaact gttacggcgg atatgcatcc ctgctccaaa catggcactg
     2461 atattcttat cagccggagt tttccagggg ccgattaagg tcacgttact aaatacggct
     2521 tttgttttag gttggccaac cgaaccggaa gcatcgttat ccgactcgaa accattcgaa
     2581 gttgatacgt cggcaacgcg tgaattgcga acacccaatg caaactgaac gtgtccggaa
     2641 tatccgaaat cggtatcaaa ttcgtcatcc aaaccgcaat aagcaatcag gtatttggca
     2701 ttcacgtttc cgccgaacca ttcgtacgaa tcatcaccgc tgtatgaaac ctgaatgtgg
     2761 tcgattgttg ttccgctacc tacggcgcat aatgtcaaac cgttgatttc attgtcgggt
     2821 tgcaaagcaa tacctgcaaa ttcaatacgt acatattgaa gggttcctga gttatcggca
     2881 ggatttgttc ctccaccata cgttattgat tttgttaacc cttctatggt cgggttcgat
     2941 tggttgaccg gtgccttgcc aacgaggatt acaccacccc agtcgcctgc tgcacgaagt
     3001 cccggagcca tacgcgaggt aaatacgata ggttctgcag ctgtaccaac agcattgatt
     3061 ttaccgccct ggaggatcac aagagctcct tttgttagtt tatctccttt gataattgtg
     3121 cctgcctgaa tgttgattgt tccggttacg aaaatattac cttccagaac gtaaattgaa
     3181 tcttttacaa ggttgcgggt tccggtaata tcggttttga taactacttc ttttgaagtc
     3241 aaaaccggag ccggatcatt ggctgttgta catgatgtta cagcaattgt tacactaaat
     3301 aaagctactg cgtagtttaa gaaaatcttt ttcattgtcg aataattttg ttttgtttgt
     3361 tttttcaaat aaatcatgac gcaaaagtag gggtgcattg ttacaggttt gttccgaaac
     3421 ggttatggtt gtgtgtaaat gctgtgacga agttatttca tccctcttgc cggtaggtat
     3481 tgttcgcttt gacattattt aaacgtattc aaacatttat taaacattat ttgttatgat
     3541 tacaatttta ttactattaa atattcaatt aaatccggat tatatgaaaa tcttaccgtt
     3601 aaccatagtt gcgttatcgc tcaatatttt ttgtgtgtca gcacaggata taaaactatc
     3661 gctcagccgg ggtgtcagca cgccggttag ccaaacagcc gattccttga gttttaaccc
     3721 tcagaatata actaaggcat ccgtttatgt accacttttc cggaagggtt gggatggtgt
     3781 agttaagggt cgtgaagcgg ccatgagctt cggaatcagt cttggcggag gcctcgtttc
     3841 cgaacaggca ccttccactg ccaatttcaa cgcgtttggc attgccggcg aaacaacagc
     3901 ctctaagctg tttgtccact ccgacgagac aaataagaaa cagggctata acctggaagt
     3961 ggcgcccaca ctcaatttcc agttgggtga ttttgagtta tcgcctatca ttggttttgg
     4021 atacctgaaa actgttcaac atgcttatac tattgagcaa agtattgcca ctggcgcata
     4081 tccgggatat attaaaattt tcaacaggcc ggaaacaacc aacagcggat ttatgataag
     4141 ccccaaattc aggattagtt acgctcccgg tcccataggt ttgtgggtgg aaggcgatta
     4201 tacagccgga cccgaaatgg ttagccgcac ttatcggttg gtgcctgccg gacgtcccgg
     4261 ctccgatggt ttgtataaat ccgatcaatt attagcggga actgcaactg aatctgttca
     4321 taaaagcagt tatggttcgt ttggagtctc tgccggcatt tctgtgtcgc tcgaaaaaaa
     4381 gaaaaaggga aaacccacac tcggcggatt ggacgatgat tgcgatgggc ttaggacagt
     4441 tacagagacc tataccaatg agaatggaca agtagttcaa cgcgttttaa aaacgaaaac
     4501 caaaagcaat cagtctaatg atattgtttc gcaggatgac gcccggacaa ttgaaaacaa
     4561 tcctttgtac aatggtaact caggcaatac aaatccactt tatgacgcgc aaaacagaac
     4621 aggtaaatta tcctcaataa aaaacaaccc attgtataat gaaaaattac aggctgacaa
     4681 tccggtttat tcaacacaaa atatagccga acaacaaata tcttgtggtc cggtaaccca
     4741 aaaaacgatg aagcctgatg gcactacaga agaaatgaca tttgcctgtc cggatgatgc
     4801 tatttatttc aacgaaagaa aaggagcaat tacagttcct aaactaacgc aaggagctac
     4861 ttttggagag aaagtaaacc agggattgca tgctgcagga ggtgcgctca gccagggagc
     4921 ttcgctgctc ggtggcgcat tg
//
LOCUS       DATDNM010000478         2787 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_916866, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000478 DATDNM010000000
VERSION     DATDNM010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2787
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_916866"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..712
                     /locus_tag="VI413_08135"
     CDS             <1..712
                     /locus_tag="VI413_08135"
                     /inference="COORDINATES: protein motif:HMM:NF045576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="BT_3928 family protein"
                     /protein_id="HEY6914629.1"
                     /translation="SSLVVIILVFQNKFRPFFVQKTQNILLAAFVVFSVGLSVYCYQH
                     LPLIDFLPYKVGVNIPEAMQVPDNAPVDKFETTFIYAKNGQQKEFTLENYPKGDSTWK
                     FVDQKSVLVSEGYKPKIHDFSIVTADFEDITEQVLYDTGYTYLLVMYDLNQASEKGAK
                     EAEKLYQQSLKTGAKFYALTASSDEDVLAFRQKTGVTYPFCKTDPTALKTVIRANPGL
                     MIIKNGTITGKWNWRDFE"
     gene            734..1387
                     /locus_tag="VI413_08140"
     CDS             734..1387
                     /locus_tag="VI413_08140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914630.1"
                     /translation="MKRKIILFLLLSVGVFAVAQQFYPTPSQRFMPEHDFLFGVGGKP
                     FEAADIKYFEFYNLQETSYFDAKDYYSGARYTTNSWFVQYIYQANSWFGVGATANYLA
                     YYNKYYDGVTDRCIGGNVRKHFSVYPTVRLTWLRRGKLTTYSSFGIGQRLIFERDNVT
                     DQFDKSSRESGIAGQITFLGFTFGDRMYGFTDLLTLGSQGMLNFGIGYRLTVPQKKK"
     gene            1389..2180
                     /locus_tag="VI413_08145"
     CDS             1389..2180
                     /locus_tag="VI413_08145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914631.1"
                     /translation="MRTKHFILIISAIVLVISSCVIREPEEKSTLTEPGWSMFCNVEP
                     CVIEQIQTFDKMLFVDSYLNTPDSLKKHYFFDNFGQYSLTVRDADYIFKMDKDTSYVI
                     TTDAKSIHSVGTEWVAKGNSWTYYMTVQCLAKNKWRLNIHPIKSYYSVYPEKENLEIQ
                     CTDTVAPKRFRDSDFSVSGDAVWIDNSRYDSEATLNYTITSPLKYVRKNRFFSEGEVT
                     IAAVDSVQNKKVETVAKYINDGSAKVEITFRGISSIYTNYQWLVY"
     gene            2228..>2787
                     /gene="tpiA"
                     /locus_tag="VI413_08150"
     CDS             2228..>2787
                     /gene="tpiA"
                     /locus_tag="VI413_08150"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005833347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEY6914632.1"
                     /translation="MRKNIVAGNWKMNKTLQEGLALATELNEALTGAKLNCDVVIGTP
                     FIHLASVAAAIDTKVIGVAAQNCANKESGAYTGEISASMVKSTGAEYVILGHSERREY
                     YGETSAILNEKVALTLANGLTPIYCCGEALEVRNANEQNAYVKNQLEETVFNLSADDF
                     KKIVIAYEPIWAIGTGVTASTEQAQD"
BASE COUNT          833 a          478 c          628 g          848 t
ORIGIN      
        1 cagttcgttg gtggtaatta ttcttgtttt tcagaataaa ttccgtccgt tcttcgttca
       61 gaaaacacaa aatatattat tagctgcttt tgtggttttt tctgtagggt tgtcggttta
      121 ttgctaccaa catttgccgc ttatcgactt tttgccatac aaagtgggtg taaatatccc
      181 cgaggctatg caggttcccg acaatgctcc ggttgataaa tttgaaacta cttttatcta
      241 tgcgaaaaac ggccaacaaa aagaatttac gcttgagaat tatccgaaag gagattccac
      301 atggaagttt gtggaccaga aatcggtatt ggtttccgaa ggttataaac cgaagattca
      361 tgatttttcc attgtaactg ccgattttga agatataacc gagcaagtgc tttatgatac
      421 cggttatact tatctgttgg tgatgtacga cttgaaccag gcttcggaaa aaggagccaa
      481 agaggccgaa aaactttacc agcaatcgtt gaaaacggga gctaaatttt atgcgttgac
      541 agcttcttcg gacgaagatg ttctggcatt tagacagaag acaggcgtta catatccgtt
      601 ttgcaagaca gaccctactg cactgaaaac cgttattcgt gccaatccgg gattgatgat
      661 aattaaaaat gggaccataa ccgggaagtg gaactggcgg gattttgaat aattgaacgt
      721 aaaaccgtat tcaatgaaaa ggaaaatcat tttgttcttg cttttaagtg ttggagtttt
      781 tgctgttgct cagcaatttt atccaacacc aagtcagcgg tttatgccgg agcacgattt
      841 tctgtttggg gttggtggaa agccatttga agcggcagat ataaagtatt ttgagtttta
      901 caatttgcag gaaacttcat atttcgatgc aaaggattat tattccgggg cacgatatac
      961 cactaattcg tggtttgtac aatatattta tcaggcaaac agttggttcg gagtgggtgc
     1021 aactgccaat tatctggctt actataataa atattacgat ggcgtgaccg ataggtgtat
     1081 cggtggtaat gtgcgcaaac atttctcggt gtatccaacc gttcgtttaa cctggttgag
     1141 aagaggcaaa ttgactacat attcatcctt tggtatcggt cagcggctta tatttgaacg
     1201 cgataatgtg acggatcagt ttgataagtc aagccgtgaa tctggcattg ccgggcaaat
     1261 aacgtttctg ggttttactt tcggagatcg tatgtatggt tttaccgatt tgcttacgct
     1321 gggcagccag ggaatgctga atttcggtat cggatatcgt ttaaccgttc cgcaaaagaa
     1381 gaaatgatat gagaacaaag cattttatat tgattatttc tgctattgtc ttggtaatca
     1441 gttcatgcgt tattcgtgaa ccggaagaga aatcgacgct aacagaacct ggttggtcga
     1501 tgttttgtaa tgttgagccc tgtgtgatcg aacagataca aacgtttgat aaaatgttgt
     1561 tcgtggatag ctatctgaat actccggact cgttgaagaa gcattatttt tttgataatt
     1621 tcggacaata cagtttgaca gtcagagacg ctgactatat ttttaaaatg gataaagata
     1681 ccagctatgt gattacaacc gatgctaaat caattcatag cgtagggact gaatgggtgg
     1741 caaaaggaaa tagctggacg tattatatga ctgttcagtg cctagctaaa aacaaatgga
     1801 gacttaatat tcacccgata aagtcttatt attccgttta tccggagaaa gaaaatctgg
     1861 agattcaatg caccgataca gttgctccga aacgatttcg cgattcggac tttagtgtgt
     1921 ccggcgatgc tgtctggata gataatagtc gttatgacag tgaggctact ttgaattaca
     1981 ccattacgtc gcctttaaaa tatgtccgga aaaatcgttt ttttagtgaa ggagaagtta
     2041 ctattgctgc tgtcgattca gttcagaata aaaaggttga aactgtagct aaatatatca
     2101 atgacggttc ggctaaagtg gaaattacct ttagaggcat atcttctata tatactaatt
     2161 atcagtggtt agtatattga taactataaa atttttattt tcaaaccaaa tataatttat
     2221 aaaaaagatg agaaaaaaca ttgttgcagg aaactggaaa atgaacaaaa cccttcagga
     2281 agggttggca ttggcaactg aattgaacga ggcgttgact ggtgcaaaat tgaactgcga
     2341 tgtagtaatc ggaactccgt ttattcacct tgcaagcgta gctgctgcta tcgacacaaa
     2401 agtaattggt gtagctgctc aaaactgtgc taacaaagaa tcaggtgcgt atacaggcga
     2461 aatcagcgct tctatggtaa aatctaccgg ggctgaatac gttatccttg gccactctga
     2521 gcgtcgcgaa tattatggtg aaacaagcgc tatcctgaat gagaaagttg ctttgacttt
     2581 ggctaatggt ttgactccta tctattgctg cggtgaagcg ttggaagtac gtaacgctaa
     2641 cgaacaaaat gcttatgtga aaaatcagtt ggaagaaact gtttttaacc ttagcgctga
     2701 cgatttcaag aaaatcgtaa ttgcttacga accaatctgg gcaatcggaa ccggtgtaac
     2761 tgcttctact gagcaagctc aggatat
//
LOCUS       DATDNM010000479         2271 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1238364, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000479 DATDNM010000000
VERSION     DATDNM010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1238364"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1098)
                     /locus_tag="VI413_08155"
     CDS             complement(<1..1098)
                     /locus_tag="VI413_08155"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914633.1"
                     /translation="MKRITIIISAFLIFGLQSCTDFLDIRPENETVLEDYWQSESQAT
                     AVLSSCYRGLTTDACIERMIVWGELRSDNVIEGNSTRDEIRKILEVNITPTNGYANWG
                     SFYSVINYCNTFLHYAPNVLKTDQNFTPTKLHSLEAEALGLRAMCYFYLVRAFKEVPL
                     ILNPSINDTQDYYVPKSSERAILDQIIADLLEAQKYARTDFGKGSYNKGRITLNAINA
                     LLADVYLWDQQYSNCVETCNRILDDKTLSLVSGDKTLTDVFYTGNSTESIFELQFDKD
                     IQYNNTVNFFYGYEGRRDVGGELYYPKFLTRTGEFSPFNYAASSVKESEKDIRETSSY
                     SPTTTGNGYNIYKYALIQNVENADGLTYTPKY"
     gene            complement(1114..>2271)
                     /locus_tag="VI413_08160"
     CDS             complement(1114..>2271)
                     /locus_tag="VI413_08160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008618251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6914634.1"
                     /translation="QRPVSLQLLGLKWETTSSYNYGCDLGFWDDKLLLDLNLYHKRTY
                     DLLFEGVPVPNSSGFTHISYQNAGTMDNDGWEINLYANKILSTKDFNIDFRFNISNSI
                     NTIVDLKSGILNTYNGEFDYQNGSYLTRLQQGNSFGSIYGFRYKGVYQYDKYKEGTQE
                     DAPVARNAQGYVIFDDKGEAIPMVFAYGKTNEYEFRGGDAKYEDVNHDGNINELDIVY
                     LGNSNPLFNGGFGPTFRYKNFSCTAFFNYRVGNKIVNTARMFAENMYSTNNQSIAVNW
                     RWRKDGDQTYIPRALYSSGYNWLGSDRYVEDGSFLRFKYLTFNYALPKKQLKQLKLDR
                     VNLYLTLNNIFVLTSYTGVDPEVGYGSLGISKDWGQTPRAKEMTLGLTVGL"
BASE COUNT          676 a          480 c          396 g          719 t
ORIGIN      
        1 atacttgggc gtatatgtaa gtccgtcagc attttcaacg ttttgtatca acgcatattt
       61 gtatatgttg tatccatttc ctgttgtagt tgggctgtaa gaacttgttt cacgaatatc
      121 tttttcgctc tctttaactg atgaagcggc ataattaaaa ggactgaatt cacccgtacg
      181 tgttaagaat tttggataat agagttctcc acctacatct cttcggcctt cgtaaccata
      241 aaagaaattc acagtgttat tatattgaat atctttatca aactgaagtt caaaaatact
      301 ttcggttgaa tttccagtgt aaaaaacgtc cgtcagtgtt ttgtccccgc ttacaagcga
      361 aagtgttttg tcatccaaaa tcctgttgca tgtttccaca caatttgagt attgctgatc
      421 ccacaaatat acatcggcaa gtaatgcatt aatagcattc agcgtaattc gtcctttatt
      481 gtatgatcct tttccaaaat cggttcgggc atatttttgt gcttcaagca aatcggcaat
      541 aatctgatcc aaaatggcac gttcgctgga cttgggaacg tagtaatcct gagtatcgtt
      601 aatacttggg tttaatatca atggcacttc tttaaacgca cgaaccagat agaaataaca
      661 cattgcacgc aaacccaatg cctctgcctc gagagagtgt aatttggtcg gagtaaaatt
      721 ctgatcggtt ttcaatacat tgggtgcata atgcagaaaa gtattgcaat agtttatcac
      781 cgaataaaat gaaccccagt tagcataacc atttgtagga gtgatattca cctcaagaat
      841 tttacgtatt tcatcacggg tactgtttcc ttctatcacg ttatccgaac gcaactcacc
      901 ccaaacaatc atacgttcga tacacgcatc ggttgtgagt ccacgatagc aggacgacaa
      961 tacggctgtg gcctgcgatt ccgattgcca gtaatcttcc agtacagttt cgttttcagg
     1021 ccgtatatcc aaaaagtcgg tacaactttg aagaccaaaa attaaaaacg ctgatattat
     1081 tattgttatt cgtttcataa tcattctaat tgtttataat ccaacagtca atcctaaagt
     1141 catttctttt gcacgaggtg tttgtcccca gtccttgcta atacccaacg aaccataacc
     1201 tacttccgga tccactccgg tatagcttgt cagtacaaaa atattattca gtgtcaaata
     1261 gagattcacc cggtccagtt tcagctgttt caattgtttt ttcggaagtg cataattgaa
     1321 tgtcaggtat ttgaatcgta aaaaagaacc atcttccaca taacggtcgc ttcccagcca
     1381 gttataacca gaactgtaca atgcgcgggg aatgtaggtt tggtcaccat ctttacgcca
     1441 acgccagttt acggcaatac tctggttatt ggtagaatac atattttcgg caaacattcg
     1501 tgccgtgttt acaattttgt ttccaaccct gtaattgaag aatgcggtgc aagagaaatt
     1561 cttataccgg aaagttgggc caaaacctcc attaaacaat ggattagagt tacctaaata
     1621 cacaatatcc agttcattaa tatttccatc atgatttacg tcttcgtatt tcgcatcgcc
     1681 ccccctgaat tcatattcgt tggttttgcc gtacgcaaaa accattggaa tagcttctcc
     1741 tttatcgtca aaaatcacat atccctgagc attccgtgca acaggagcat cttcctgagt
     1801 tccctccttg tatttgtcgt actgataaac ccctttataa cggaaaccat atattgaacc
     1861 aaaagaatta ccctgttgca aacgagtcag gtacgatccg ttttggtaat caaattcgcc
     1921 attataagta ttgaggattc cgctcttcaa atcaacaata gtatttattg aattggagat
     1981 attgaagcga aaatcaatat tgaaatcttt tgtcgacaaa attttatttg cgtataaatt
     2041 tatttcccaa ccatcattat ccattgttcc ggcattttgg taggatatat gtgtgaaacc
     2101 ggatgaattg ggaactggta cgccttcgaa taataaatca tatgtccgtt tatgatataa
     2161 attcaaatcc aacaacaatt tatcatccca gaaacctaag tcgcagccat agttatatga
     2221 agatgttgtt tcccatttta acccgagcaa ctgcaacgaa accggacgct g
//
LOCUS       DATDNM010000480         2423 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1556795, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000480 DATDNM010000000
VERSION     DATDNM010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2423
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1556795"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..682)
                     /locus_tag="VI413_08165"
     CDS             complement(<1..682)
                     /locus_tag="VI413_08165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914635.1"
                     /translation="MEMFTKIKLRNILLLLFLLFSIVDVNYAQLSCILIDNPALKTAY
                     MNPLNIPTDVSIPKTVRVNIHFILRSNGTGNFTETTDIYNVQNSYNGYWFANKVIEQC
                     NYWLDRNQEMTQQLSCCPIPVEPINYRYTLAGVFFDKNDTYFNNQGIHTNLIKNGSDV
                     INVLVYPNASGNGSAYLGGNICWQNGAQKAYDNYLLYGDWGIYGVISLGINHEVGHCL
                     SLEHCKRYA"
     gene            complement(660..1580)
                     /locus_tag="VI413_08170"
     CDS             complement(660..1580)
                     /locus_tag="VI413_08170"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914636.1"
                     /translation="MKTNLTVLLLTLIWLNGFSQAEFAPIGAEWYYSKTESFNPPQIH
                     YMKHTCIKDSTIADKRVKVIQKTLFKYGGVAVNLGYEYLYQHSDTIFYWKSGEFHVLY
                     NFSLAKGDSLLLYSEMPNQCEDKTPYGWSSIDSVYFMTINSHQLKAYSSTHMKGSIWG
                     FDSFPIIEKIGSTQYLLPQNAFCGIMDGEPQIGVLRCYSDPEIGNFQYVNVPCDKITS
                     WPDSFIQLNMDAQFKLYPNPVVDELTIEYNDSRDTWFNLDIFDLTGKLIYSRFFRVGE
                     KIDLSALQRGWYPIIIYNNKLYYNGNVYKN"
     gene            complement(1608..>2423)
                     /locus_tag="VI413_08175"
     CDS             complement(1608..>2423)
                     /locus_tag="VI413_08175"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HEY6914637.1"
                     /translation="GTFYGPPTELTNPNVQYAGYFVGNVKMTGEIWAASGTITGSDER
                     NKKDISVLDASDNLYKLLPKQYKLKTPSELLSEQKPVSDTAKVVIDNIAITEGDNKLH
                     YGFLAQELQLVYPDLVYTSSDGTLGIDYQGLIPMIIDQLQKMKQTLQEKDNRILALEE
                     GLEKCCGLSNLKSASIPTGTTLLETNARLNQNIPNPFSRETRIDCFIPETSGNSVIYI
                     YNMNGTQLQQYGINGKGEQSVTISGNTLEPGMYLYALIVDGKEIDTKRMILTK"
BASE COUNT          760 a          440 c          424 g          799 t
ORIGIN      
        1 gtgcatatct tttacaatgt tctaaagata aacaatgtcc tacttcatgg ttaatcccta
       61 aagaaataac accatagatg ccccaatctc cataaagaag ataattatca taggcttttt
      121 gtgcgccatt ttgccaacat atattacctc ccagataagc agatccattt cccgaagcat
      181 tcggataaac cagtacatta attacatcag acccgttttt gattaggttg gtatgaatgc
      241 cctgattatt aaaataagta tcattcttgt cgaaaaaaac accagctaag gtatacctgt
      301 aattgatagg ttcgacaggt attggacagc atgataattg ttgagtcatt tcttgatttc
      361 tatccagcca ataattgcat tgctcaatta ccttattggc aaaccaatat ccattatagg
      421 aattttgaac gttataaata tccgttgttt cggtaaagtt tcctgtacca ttcgatctaa
      481 gtataaaatg aatattcaca cgtaccgttt tagggatact aacatctgta ggaatattga
      541 gcgggttcat atatgctgtt ttcaatgcag gattatcaat gagtatgcag gataactgag
      601 cataattgac atctacgatt gaaaataaaa gaaaaagtaa tagtaaaata ttacggagtt
      661 taatttttgt aaacatttcc attgtagtac agtttgttat tatagataat aatcggatac
      721 caaccccgct ggagagcaga tagatcaatc ttttcaccaa cgcgaaaaaa tcgggaataa
      781 atcaactttc ctgtgagatc aaatatgtct aaattaaacc aagtgtccct tgaatcgtta
      841 tattcaatgg ttaattcatc tacaaccggg ttgggatata acttgaactg agcgtccatg
      901 tttaattgga taaaactatc cggccagctt gtaatcttgt cacaaggaac attaacatat
      961 tggaaattcc caatttcagg atcagagtag cacctcaaaa caccgatctg cggttctcca
     1021 tccataatac cacaaaaagc attttgaggg agaagatatt gtgtacttcc aatcttttca
     1081 ataattggaa atgaatcgaa cccccagatt gaccctttca tgtgagttga ggagtaggct
     1141 ttcaattgat ggctgtttat tgtcatgaaa taaactgaat cgatactgct ccacccataa
     1201 ggagttttgt cttcgcattg attgggcatt tcagaataaa gaagtaatga atcgccttta
     1261 gcaagagaga aattgtataa cacatgaaat tcaccacttt tccaataaaa aattgtatca
     1321 ctatgctgat aaaggtactc ataacccaag ttgacagcta ctcctccata cttaaataaa
     1381 gttttttgta taacttttac tcttttatcg gcaatagtgg aatctttaat gcaggtatgt
     1441 ttcatgtaat gaatttgtgg tggattaaag ctctcggtct ttgaataata ccactcagcg
     1501 ccgataggtg caaattcggc ttgagaaaaa ccatttagcc aaatgagtgt aagtaataaa
     1561 actgtcagat ttgttttcat gatgataaca ttataaataa tacttagtta tttcgttaaa
     1621 atcattcttt tagtatctat ttctttgcca tcaacaataa gggcatagag gtacatacca
     1681 ggctcaagag tgttaccact aatcgtaact gactgttccc ctttgccatt tataccgtat
     1741 tgctgcaatt gagttccatt catgttgtag atatagataa ctgaattgcc agatgtctca
     1801 ggaatgaaac aatcaatgcg ggtttctctg ctaaatgggt tagggatatt ctgatttaaa
     1861 cgagcattgg tttcaagaag tgttgttccg gtgggtatgg aagcgctttt taaattagac
     1921 aaaccgcaac atttttctaa tccttcttca agggccaaga tacggttatc tttttcctgc
     1981 aaggtttgtt tcattttttg taactgatca attatcattg gaattaatcc ttgataatca
     2041 atgccaagcg tgccatcgct gcttgtgtat actaaatctg gataaacaag ttgtaattcc
     2101 tgtgccagaa acccataatg aagtttatta tccccttcgg taattgctat gttatctatt
     2161 accacttttg cggtatctga gactggtttt tgttcactta aaagttcaga tggagttttc
     2221 agtttgtatt gcttaggcaa aagtttataa agattatcag aagcatcaag aacgcttata
     2281 tccttcttat tcctttcatc tgatcccgta attgtgccac tggctgccca tatttcacct
     2341 gtcattttca cattgccaac aaagtatcct gcatattgga cattgggatt agtaagttct
     2401 gtgggcggac cataaaatgt acc
//
LOCUS       DATDNM010000481         2588 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_702702, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000481 DATDNM010000000
VERSION     DATDNM010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_702702"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VI413_08180"
     CDS             <1..300
                     /locus_tag="VI413_08180"
                     /inference="COORDINATES: protein motif:HMM:NF039827.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5687 family protein"
                     /protein_id="HEY6914638.1"
                     /translation="YLLLFLATFNTKRVDLSKSSAMNYQGTTYKSFLIVLPIMFVPMI
                     LVWVLSSVASMSVALWTLTIMGLAGILFRNQLITLCVNQFNRRKYKLAEGFREGE"
     gene            368..1063
                     /locus_tag="VI413_08185"
     CDS             368..1063
                     /locus_tag="VI413_08185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6914639.1"
                     /translation="MIQVTDLQKAYNGVTVLNIPVLTIPQGESFGLVGNNGAGKTTFF
                     RLILDLIEPTAGEVKIDDLKVMRNDAWKSSTGSFLDEGFLIDFLTPEEYFSFVGKLHH
                     KSEGDIAVFLDSIRDFFNDEVLGSKKLIRDFSKGNQKKIGIAAALIGDPSILILDEPF
                     TALDPSSQIRLKRFLTDLQARFNMTMLISSHDLNHITEVCKRTVVLEKGNIVKDIQTN
                     EDTLKELEAYFAV"
     gene            complement(1127..1969)
                     /locus_tag="VI413_08190"
     CDS             complement(1127..1969)
                     /locus_tag="VI413_08190"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6914640.1"
                     /translation="MKLYKIEAGTFHVDGGAAFGVVPKKVWQKRYPCDEDNYCHLTMR
                     CLLIDTGEKRILIDTGTGDKQLEYLKYYGFKGVINFENELGKLGYSCNDITDVIFTHL
                     HFDHCGGSTKYNSDKSKVELVFPNAAHWVGETQWNNFLNPNVREGDSYFSENMLPVQE
                     AGKLKLVSENQFVCPEVEIRIFNGHTVGQLVSYIKYGLKTIVYVGDVIPLAANVPLAW
                     ISSYDISPISAMAEKKILLDEAAERKQILYFEHDAYTECCTVVAQYNKHKVEKKLKFE
                     DVIK"
     gene            2151..>2588
                     /locus_tag="VI413_08195"
     CDS             2151..>2588
                     /locus_tag="VI413_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase domain-containing protein"
                     /protein_id="HEY6914641.1"
                     /translation="MQRVHFIAIGGTAMLNLAIAISKKNNFEVTGSDVEFTEPTRSRL
                     KEYGLLPNKTGWFPDKIQKGLSAVVLGIDTAEDNPELIRAKELGLKIYSVPEYLFQQT
                     RSKTRIVVSGSHGKTTTTAMILFVLKSLKIDVDYMISTQIKGFD"
BASE COUNT          778 a          471 c          517 g          822 t
ORIGIN      
        1 tatttgttat tgtttttggc aactttcaat accaaacggg tagatttgtc taaatcttca
       61 gccatgaatt accagggaac aacctacaaa agttttttga tagtgctgcc aatcatgttt
      121 gtacctatga ttcttgtttg ggttttatct tctgttgctt caatgtcagt tgcattatgg
      181 actttaacga ttatggggtt ggcaggtatt ctgtttcgaa atcaattgat aacattatgt
      241 gtcaatcagt ttaatcgtcg gaaatacaaa ttggctgaag gattccgaga aggtgaataa
      301 tgaactaata tgacaattta ctgatgtttt aatgggaaaa aagaacaaat taatttatga
      361 atttgcaatg atacaagtaa ccgatttaca gaaagcttac aacggcgtaa ccgtattaaa
      421 tatcccggtt ttgactattc cgcaaggtga aagttttggg ttggtaggaa ataatggggc
      481 cggaaaaacc actttttttc gtttgattct tgatttgatt gaaccgactg caggggaagt
      541 gaagattgat gacctgaaag tgatgcgcaa tgatgcatgg aaatcttcga cgggctcatt
      601 tcttgacgaa ggctttctga ttgattttct tactccggag gaatatttca gctttgtagg
      661 aaaattgcac cacaaatcgg aaggtgatat cgctgttttt ctggactcta tcagggactt
      721 ttttaatgat gaagtgctag gttcaaagaa gcttattcgc gatttttcga aaggaaatca
      781 aaagaaaatc ggtattgctg ctgcgttgat tggtgatccc agtattctga ttctggatga
      841 accgtttacg gcacttgacc cgtcgtcgca aattcggttg aaacgatttc tgacagattt
      901 gcaggcgcgt tttaatatga ctatgctcat ttccagccac gacctgaatc atataactga
      961 agtatgcaaa cgcactgtgg tgctcgaaaa aggtaatatt gtgaaagata ttcagaccaa
     1021 cgaagatacg ttgaaggaac ttgaagcgta ctttgcggtg taatgatttg atataaatta
     1081 aaatgaagga ggcaataaga acttacttat tgcctctgtc atttttttat ttgattacat
     1141 cttcaaattt caactttttc tccactttat gcttgttgta ttgtgctacc accgtgcaac
     1201 attcagtata agcatcgtgc tcgaaataca aaatctgttt tctttctgca gcttcgtcaa
     1261 gcaaaatttt cttttccgcc atggccgaaa taggagagat gtcgtacgac gaaatccacg
     1321 ccagcggcac attagctgct aacggaatta catctcctac ataaacaatc gttttcaatc
     1381 catatttgat gtaactcacc agttgtccga cagtgtgtcc attaaatatc cggatttcca
     1441 cttcaggaca aacaaattga ttttcggaaa ccagtttcaa ttttccggct tcctgaactg
     1501 gcagcatatt ttcggaaaag taggaatctc cttcacgtac atttggattc agaaaattat
     1561 tccattgcgt ttcgcccacc caatgtgctg cattcggaaa aacaagttca acttttgatt
     1621 tatccgaatt atattttgta gacccaccgc aatgatcgaa gtgtaagtgc gtgaaaataa
     1681 catcggtaat atcgttgcaa gaataaccaa gtttaccaag ttcattttcg aaatttataa
     1741 ctcctttgaa accataatat ttcaaatatt ccagctgctt gtcaccggtt ccggtatcaa
     1801 tcagaattcg tttttcgccg gtatcaatca ataagcaacg catcgtcaga tggcagtaat
     1861 tgtcttcatc gcaaggatag cgcttttgcc atactttttt ggggacaacg ccaaatgctg
     1921 caccaccatc cacgtggaaa gttccggctt caattttata taatttcatc ttgttttgat
     1981 tttaaaataa tcgaaatatt gactaactgt attgcaatat gaacgttatt aagtcagtat
     2041 ggttaattaa ggagtattaa aatttcatga atttgacgaa ctttttagta catttgcgtt
     2101 ttaaatcaat ttctgacaaa aataagtaaa aacattcatc tgccaatcgt atgcaacgag
     2161 ttcattttat tgccataggc ggaactgcca tgctcaattt agctattgca atcagcaaaa
     2221 agaataattt tgaagtaaca ggttctgatg ttgaatttac tgagcccacg cgcagcagac
     2281 tgaaggaata tggcctgtta cccaacaaaa cggggtggtt tccagataaa attcagaaag
     2341 ggctgagtgc agttgttctg gggattgata cggcagaaga taatccggag ctgattcgcg
     2401 caaaggaact ggggttgaaa atttactctg tccctgaata tctttttcag cagacacgta
     2461 gcaaaacccg cattgtagtg agtggaagcc acggcaagac tactaccacg gctatgattt
     2521 tatttgtgtt gaaaagcctg aaaatagatg ttgattacat gatcagcact caaataaagg
     2581 gttttgac
//
LOCUS       DATDNM010000482         3426 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_62157, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000482 DATDNM010000000
VERSION     DATDNM010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3426
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62157"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..259
                     /locus_tag="VI413_08200"
     CDS             <1..259
                     /locus_tag="VI413_08200"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444415.1"
                     /note="catalyzes the formation of 5-phospho-alpha-D-ribose
                     1-phosphate from D-ribose 5-phosphate and ATP; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEY6914642.1"
                     /translation="LCKAADLMTSKGARSVRAIVSHGVMSGDAAQRIMDSALTEIAFT
                     DSIPFDTSKCPKAKILTISKMFGDTIQRVQENKSISEQYLL"
     gene            complement(342..1493)
                     /gene="dnaJ"
                     /locus_tag="VI413_08205"
     CDS             complement(342..1493)
                     /gene="dnaJ"
                     /locus_tag="VI413_08205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005856657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEY6914643.1"
                     /translation="MSKRDYYEILEVSKNASAEEIKKAYRKKAIQYHPDKNPGDKASE
                     EKFKEAAEAYEVLSDDQKRQRYDQFGHAGVGGASGGGGFGGNMNMEDIFSHFGDIFGG
                     HFGGFGGFGGSQRGGGQRVRRGSDLRVKVKLTLAEIATGVEKKIKVKKQVACSHCNGT
                     GGAHGSSTTTCTTCNGQGRVMRVQNTILGQMQTAAECPTCGGDGKIIKEKCSYCNGEG
                     VVREDEVITINIPAGVMEGKQLSMSGKGNAARRGGVNGDLLVLVEEEAHPELIRDEND
                     LIYNLLLTVPMATLGGSVEVPTVEGKVKVTIAPGTQPGKVLRLRGKGLPNVNRYGTGD
                     LLVNIGVYIPENLNKEEKATMEKLGKSENVKPNASASRNFFSHFRNMFE"
     gene            complement(1651..2220)
                     /locus_tag="VI413_08210"
     CDS             complement(1651..2220)
                     /locus_tag="VI413_08210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEY6914644.1"
                     /translation="MKKAKHTEENPEVKETIETPETTQAQESTETTEQAADQIVDEIE
                     VMVQKCAELNDKNLRLMAEFDNYRKRTLKERMDLVKTAGEKILADMLPLVDDFERGLK
                     AMETSQDVQAVKDGVDLIYSKFISFLIQNGVKAIPTENETFDTEFHEAITTFPAPTEE
                     LKGKIIDCVSKGYTLNEKVIRFSKVVVGE"
     gene            complement(2561..>3426)
                     /locus_tag="VI413_08215"
     CDS             complement(2561..>3426)
                     /locus_tag="VI413_08215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007759127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEY6914645.1"
                     /translation="AIGMLGFAVALSIPFSLFALFPSWLKSLPKSGGWLNSVKVVLAF
                     LELALALKFFSVADLAYGWRILDREVFLSIWIVVFALLGLYLLGKLRFSHDSESKHTS
                     VLGVFLAIISFAFSVYMIPGLWGAPLKSISAFAPPLYTQDFNLYNNEVHPAFTDYEQG
                     MAYAAQKKLPVVVDFTGFGCVNCRKMEASVWTDPSVKDLLKNDFVLISLFVDDKTTLA
                     KPYEVQENGRTTTIETVGDKWSYLQRHKFGANAQPFYVMLDNNGKPLNKSYAFDEDPA
                     NFVKWLKVNSK"
BASE COUNT         1030 a          779 c          548 g         1069 t
ORIGIN      
        1 actttgcaaa gcagcagatt taatgacgag caagggagcc agaagcgttc gcgcaattgt
       61 ttcacacggc gttatgtcag gcgatgcagc tcaacggatt atggactcag cacttacaga
      121 aattgctttt acagattcca tcccatttga cacaagcaaa tgtcctaaag caaaaatcct
      181 cactatttcg aaaatgtttg gtgataccat tcaacgcgtt caggaaaaca aatcaatcag
      241 cgagcaatat cttttgtaaa gcatatttat cagacataaa aaaactccga agtaaaaatt
      301 tcacttcgga gtttttttat gcgctttatc gaacaaaacc tttattcaaa catatttctg
      361 aagtgagaaa agaaatttct tgaagccgat gcatttggtt ttacattctc tgatttacca
      421 agtttttcca ttgtagcttt ttcttcttta ttcaaatttt cggggatgta cacgccaata
      481 ttgaccaata aatcacccgt tccgtaacga tttacattgg gtaaaccttt gccacgcaaa
      541 cgaagaactt tacctggctg tgttccggga gcaatagtca cttttacttt cccttccaca
      601 gttgggactt ccaccgaacc acccaatgta gccataggca ctgtcagcaa aagattatat
      661 atcaaatcat tctcgtcacg aataagttcc ggatgtgctt cttcttcaac caaaacaagt
      721 aaatcaccgt tcaccccacc tcttcgtgca gcatttccct taccgctcat cgacagttgc
      781 ttgccttcca ttacaccagc cggaatatta atggtaatta cttcgtcttc acgaacaaca
      841 ccttcaccat tacagtacga acatttttcc ttaataattt ttccatcacc accgcatgtc
      901 ggacactcgg cagccgtttg catctggcca agaatggtgt tttgcacacg cattacacgc
      961 ccctgaccat tacaagtggt acatgtagtt gtagatgaac catgagctcc accggttcca
     1021 ttacaatgcg aacaagcaac ttgttttttt acttttattt tcttttcaac ccccgtagca
     1081 atttctgcca acgtcagctt tactttaaca cgtaaatcgg aaccacggcg aacacgttgc
     1141 ccaccaccac gctgactgcc gccaaaacca ccgaatcctc caaaatgacc tccgaaaata
     1201 tcaccgaaat gggaaaatat atcttccata ttcatatttc cgccaaatcc gccaccacca
     1261 gacgctccac caacaccggc atgaccaaac tgatcgtacc gttgacgttt ttgatcatcg
     1321 ctcaacactt cataagcttc agctgcttct ttgaattttt cttccgaagc tttatcacct
     1381 ggatttttat cggggtggta ttgaatggct ttcttacgat aagccttttt tatttcttct
     1441 gccgatgcat tttttgaaac ctccagtatt tcgtagtaat ctctttttga catattctta
     1501 atgtgctaat aagaaagatt aaccagaata ggctcaatga aaaaaattaa ttttttttca
     1561 ttgagcatac cggattataa cttcttatat ttctgttttt ctttaaattt aaactaaagt
     1621 aattacctag ttgactgtta tattactgga ttactcgcct acaacaactt ttgagaaacg
     1681 aataactttc tcattcaggg tgtaaccttt cgacacacaa tcaatgattt tacctttcaa
     1741 ttcttctgtt ggtgctggaa aagtcgtaat tgcttcgtga aattcagtat caaaagtttc
     1801 attttcggta ggaatggctt tcactccgtt ttgaatcagg aatgatatga atttagaata
     1861 aattaaatct acaccatctt tcaccgcctg aacatcctgc gaagtttcca tagcctttaa
     1921 tcctctttca aaatcatcga ctaacggaag catatccgct aatatctttt ctcctgcagt
     1981 tttaaccagg tccatacgtt ccttaagagt acgcttgcga taattatcaa attcagccat
     2041 caaacgaaga tttttatcgt tcaattcggc acatttttga accatcactt caatttcgtc
     2101 tacaatctga tcagcagcct gttcggttgt ttcagtactt tcctgggctt gagttgtttc
     2161 tggagtttca attgtttcct ttacttcagg attttcttct gtatgttttg cttttttcat
     2221 ataaaaagtg aatatttttc ttatttaatt gatttctatc gaatttttaa ttttgccgga
     2281 tatctatctc aaattacaca aagaaccgca aagctttatt cccgtttgat tgttttacaa
     2341 ttcaactgtt ggaaaacctt tgcgaaactc agtggtctta gcggtttata ttacaattaa
     2401 tgctaagcta tattgatttt aaagacaaaa caacctaaac aataattttg ccaaaacacc
     2461 cgagttccgt ttttggcaga agtcgggtgg cagaatggca gtgttagcta aaagctggca
     2521 gttaaaagtt ctaatacagg aaatatgagt cgtcaaactg tcatttactg tttactttca
     2581 accatttcac aaagttagcc ggatcttcat cgaaagcata agatttattc aacggctttc
     2641 cattattatc aagcattacg taaaaaggct gtgcgttagc tccaaatttg tgacgttgca
     2701 ggtaactcca tttatcacca accgtttcaa tagttgttgt ccggccattt tcctgcactt
     2761 cgtatggttt tgctagcgtg gttttatcat caacaaataa agagatcaat acaaaatcat
     2821 ttttcaacaa atctttcacc gacggatcag tccaaactga agcttccatt tttcggcaat
     2881 ttacgcatcc aaaccctgta aaatcaacca caacgggcag tttcttttga gccgcatagg
     2941 ccattccctg ctcataatct gtaaatgccg ggtgaacctc attattgtat aaattgaaat
     3001 cctgtgtata aagcggtggt gcaaaggcgc tgattgattt gagtggtgct ccccataagc
     3061 caggaatcat atacacagaa aatgcaaatg aaatgatagc taaaaacacc cctaaaaccg
     3121 acgtgtgttt tgattcacta tcatgcgaaa agcgcaattt cccaagtaaa taaagaccta
     3181 acaatgcgaa aacaacaatc cagattgaca gaaacacctc ccgatccaga atgcgccaac
     3241 catatgccaa atcggctacc gaaaagaatt taagagctaa tgctaactct aaaaatgcta
     3301 ataccacttt tactgaattc aaccatccac ctgacttcgg caaagacttt aaccacgatg
     3361 gaaaaagtgc aaataagcta aacggaatag acaatgccac tgcaaaacct aacatgccta
     3421 tagctg
//
LOCUS       DATDNM010000483         2090 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_702791, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000483 DATDNM010000000
VERSION     DATDNM010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_702791"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1803)
                     /locus_tag="VI413_08220"
     CDS             complement(<1..1803)
                     /locus_tag="VI413_08220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013618706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-L-arabinofuranosidase domain-containing
                     protein"
                     /protein_id="HEY6914646.1"
                     /translation="MHYFISGILPLNAQDKLYPNEFPLGEVTLLESPFKHARDLNIKV
                     LLKYDVDRLLSPYRKEAGLPEKAKGFENWDGLDGHVGGHYLSALAMNYAATGNLECKK
                     RMDYMVAELKACQDANSKKNPVWGVGYVGGVPNSAGIWPFIKAGDISYIWKSWVPWYN
                     VHKMYAGLRDAWIYTGNEDSKTIFLKFCDWAINLTSDLSDDKMEEMLGNEHGGMNEIF
                     ADAYQITKKEKYLTAAKRISHKMLLNPMLADQDNLDNKHANTQVPKAIGFERIGELSH
                     NCNYSEAGRFFWETVTGKRTLAFGGNSRREFFPSAASCEDFINDVEGPESCNTYNMLK
                     LTEDLFRVSPLAKYADYYERAVYNHILSTQNPEHGGYVYFTPVRPRHYRVYSAPNQAM
                     WCCVGSGMENHGKYNQFIYTHKGDSLFVNLFIASELNWKSKGLKIKQETNFPFEEKSK
                     ITFTGKKAKFAMLIRYPVWVEAGKIKISVNGNELEITEKPSSYIAINRIWKTGDKVEI
                     YLPMHNTIEHLTNVPDYVALLHGPIVLGAKTGTENLTGLVANDSRWGHIAGGERLPVD
                     KAPIIIEDNLQDIAAKLVPVEGKQLTFTAPELKLI"
     gene            complement(1893..>2090)
                     /locus_tag="VI413_08225"
     CDS             complement(1893..>2090)
                     /locus_tag="VI413_08225"
                     /inference="COORDINATES: protein motif:HMM:NF037003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914647.1"
                     /translation="GFCNFGLEPVELNYKDFEKLGLAGTKTVRDLWRQKNVSTIAIGK
                     DSLSMKIPAHGVLLYKFTPLK"
BASE COUNT          558 a          465 c          387 g          680 t
ORIGIN      
        1 tatcaatttt aattctggtg cggtgaatgt aagttgttta ccttcaactg gaactagttt
       61 ggcagcaata tcttgcaaat tatcctcaat aataattggc gctttgtcaa ccggtaaacg
      121 ttcgccaccg gcaatgtgtc cccaacggct atcattggca actaatcctg taagattctc
      181 ggttccggtt tttgcaccaa gtactattgg accatgcaga agcgcaacat aatcaggaac
      241 attagttaaa tgttctattg tattgtgcat tggtaagtag atttccactt tatcgcccgt
      301 tttccaaatc ctgtttattg caatgtagct tgaaggtttt tctgtaattt caagttcatt
      361 cccatttacg ctgattttta ttttacccgc ttctacccaa accggatatc ggataagcat
      421 tgcaaatttt gcttttttcc ccgtgaaagt tatcttgctt ttttcttcga aagggaaatt
      481 ggtttcctgt ttgattttca accctttact tttccagttt aattccgagg caatgaaaag
      541 gttcacaaac agcgaatcgc ctttgtgcgt gtaaataaat tgattgtatt tgccatgatt
      601 ttccattccg ctaccaacac aacaccacat ggcctgattg ggagccgaat atacgcggta
      661 gtggcgtggg cgtaccggtg taaaatacac atacccacca tgctcggggt tttgagtaga
      721 taagatgtga ttgtaaactg ctcgctcata ataatcggca tacttcgcca aagggcttac
      781 gcgaaataaa tcttcggtaa gtttgagcat gttataggtg ttgcacgatt ctggcccttc
      841 cacatcgttg ataaaatctt cgcaagaggc tgcacttggg aagaattcac ggcggctatt
      901 gccaccaaaa gccagcgtac gctttccggt aactgtttcc cagaaaaatc taccggcttc
      961 ggaataattg cagttatgtg aaagttcgcc aattctttca aatccaattg cttttggcac
     1021 ctgtgtgtta gcatgtttat tgtcgaggtt atcctgatcg gccaacattg gattcaatag
     1081 cattttatgc gaaatgcgtt tggcggcagt caagtatttc tctttcttgg ttatctggta
     1141 agcatcggca aaaatttcat tcattccacc atgttcgttt ccaagcattt cttccatttt
     1201 atcatcactc aaatcggaag tcaggtttat tgcccaatcg caaaatttca gaaatatcgt
     1261 ttttgaatct tcatttcctg tgtatatcca tgcatcgcga agtccggcat acattttatg
     1321 tacattgtac cagggcaccc acgatttcca gatatagctt atatcgccgg ctttaataaa
     1381 gggccaaatg ccagcactgt tcggtacacc acctacataa ccgactcccc atacaggatt
     1441 ttttttggag tttgcatctt gacaagcctt taattcagca accatataat ccattcgctt
     1501 tttacactcc aaatttccgg tggcggcata attcattgcc aaagccgaca aatagtgccc
     1561 tccaacgtga ccatcgagtc catcccaatt ttcaaatcct ttggcttttt caggcaatcc
     1621 ggcctcttta cggtaaggcg acagcaaacg atcaacatcg tatttgagca atacttttat
     1681 attcaagtca cgtgcatgtt tgaacggact ttccaacaaa gtaacttcac ccaatggaaa
     1741 ttcatttggg taaagtttat cctgtgcatt caggggaaga atgcctgaaa tgaaataatg
     1801 caccagaatg atacagcaga ttattcttgt tattctattc aactttcaat attttactag
     1861 ttcgactttg caatttctta tcagatattc gactatttta atggcgtgaa tttatacaga
     1921 agcactccgt gggcaggtat tttcatcgaa agagaatctt tgccaatggc aatcgtgctt
     1981 acattctttt gtctccagag atccctgacg gttttagtcc cggctaatcc cagtttttca
     2041 aaatctttat aattcagctc cacgggttct aatccgaaat tacaaaaccc
//
LOCUS       DATDNM010000484         4087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_62400, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000484 DATDNM010000000
VERSION     DATDNM010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4087
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62400"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..2423
                     /locus_tag="VI413_08230"
     CDS             198..2423
                     /locus_tag="VI413_08230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY6914648.1"
                     /translation="MFVFINIGWIGYLPPIDELQNPKNKFATEIYSTDQQLLGRYFFS
                     KENRVGVHYNEISENVVNALVATEDVRYYKHSGIDGIALTRAVILTGILRHKSSGGGS
                     TITQQLAKQLYSPKADNFIERLLQKPIEWVISVKLEKLYTKEEIMAMYLNQLDFLNNA
                     VGIKSAAQIYFSTSPAKLKIEEAATLVGMCKNPSYFNPVRYNERTRGRRNTVLNQMRK
                     ADFITNSQYDSLIALPLTLHYQKVDHRLGLAAYFREYLRNILTADEPNKSDYASWQED
                     KYEEDKRQWENNPLYGFCNKNKKPDGTPYNIYTDGLKIYTTIDSRMQRYAEDAVDEHI
                     HSLQKTFFKEKRKRSYAPFAKNVNQEEINSIMNSAMVQSDRYRKMKANGDSESDIKAA
                     FRKPIEMQVFSYDGDIDTILSPIDSIRYHKYFLRCGFMSMDPHNGNVKAYIGGPDFSQ
                     FQYDMVNVGRRQIGSTVKPYLYTLAMEEGMWPCDKTAWQPISLPDGTGKLWSPKTTTK
                     GKSIGDIVTLRWGLANSDNWISGYLMSLFTPNALIKLMRSFGVKGYLPPVVSLCLGPC
                     EISVAEMVDAYTAFANKGIRVEPVYVTRIEDANGNVIGKFTPQMHEIFSESTAYKMIY
                     MMRGVIDGGTGSRIRSRYGLTMPMGGKTGTTQNNSDGWFMGYTPSLVSGVWVGGEDRS
                     IHFDNIAEGQGASMALPIWALYMKKVLADQDLGYSSNEQFDIPASFNANAGCDVEVTE
                     Q"
     gene            2556..>4087
                     /locus_tag="VI413_08235"
     CDS             2556..>4087
                     /locus_tag="VI413_08235"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6914649.1"
                     /translation="MKRFFFITICMLCQVFAMAQWDTDRILTIGRYALSFEDYVLSIQ
                     YFNQVIKIKPYLAEPYLYRAMAKIELGDYQGADQDCTDAIERNPFIPQAYYARGFARK
                     NMEFYKEATADFTKALEFSPDALYLLMNRMDSREKSEDYQGAMSDLDLYMRLNSKNLN
                     LYYEKGRLQLAMKDTVGAEKTFNRYIELDSISSFGWSARALLKMQKNDREGALKDYTQ
                     AIKHNSTYFGDYINRGILNVQTKNYKQALTDYNNAIKYDKSSALAYYNRGLLRANLGD
                     NNNALSDLNMVMKLDSGNNEALLQKAGLEITLRDYHSAIRDYKLIIKKYPYFIPAYLG
                     IAEAEDAMGNEKGAFQYRQMASNIEKNKDYINRKSKESIKATNKMVATAQQGSTGRKT
                     ILFNRFADQNTDNDVETETKYADDKTRGAVQGKYTDVVNEKNFALTYYAKTDEIRRTN
                     TYYSALDQYNKLKKLSSILKITNNELALTAELINGHFEAINEISTRLGQDNTNADIYF
                     NRA"
BASE COUNT         1364 a          739 c          853 g         1131 t
ORIGIN      
        1 cctgttggaa taatgatttc caacctcatt ttaatagaat taatgaaagt ctgaattata
       61 aaaaaaagta gtacttttgt gcccacattt atgttacact agttatggaa aaaatgattc
      121 aaaagggcaa tattcgctca aaattcagaa agatattttg gcgattattt gcatttggtg
      181 tttgctgtat tattttaatg tttgtattta tcaatattgg ctggattggt tacctgcctc
      241 ctattgatga acttcaaaat cccaaaaata aatttgcgac agagatctac tctactgacc
      301 agcaattgct tggacgatat ttttttagca aagaaaaccg tgttggcgtt cattataacg
      361 aaatatccga aaatgtcgta aatgcactcg ttgcaactga agatgtgcga tattacaaac
      421 attccggaat tgacggcatt gctttaacca gagctgtgat tctgactgga atcttgcgtc
      481 ataaaagctc gggaggtgga agtactatca cgcagcaatt agccaagcaa ttatattctc
      541 ccaaagcaga taattttatc gaacgcctgt tacaaaaacc tattgaatgg gtaatttcgg
      601 taaaactgga gaaattatac acgaaggaag agattatggc tatgtatctc aatcagttag
      661 actttctgaa taatgctgta ggaatcaaat cggcagctca aatatatttc agtacatctc
      721 cggcgaaatt aaaaatagaa gaagcagcca cgttggttgg tatgtgtaag aatccatctt
      781 attttaatcc tgtaagatat aatgaacgca caagaggccg ccgcaacacc gtattaaatc
      841 aaatgcgtaa agctgatttt attactaaca gtcaatacga ttcactaatt gcactgcctc
      901 ttacgctgca ttaccagaaa gtagatcacc ggctgggact ggcggcctat ttcagagaat
      961 atctccgcaa tattctaact gctgatgaac caaacaaaag tgattatgca agttggcagg
     1021 aagataaata tgaagaggac aaacggcaat gggaaaacaa tccgctttat ggcttctgta
     1081 acaagaacaa aaaaccggat ggcactccat ataacattta cacagatggt ttgaaaattt
     1141 acaccaccat cgactcacgc atgcaacgat atgcggaaga tgctgtggat gaacatatac
     1201 attcgcttca aaaaacattt ttcaaagaaa aaagaaaacg gagttatgct cctttcgcaa
     1261 aaaatgtaaa tcaggaagag ataaattcga ttatgaatag cgcaatggtg caatcggatc
     1321 gctatagaaa aatgaaagca aatggcgaca gtgagtcgga tatcaaagca gcattcagaa
     1381 agccaattga gatgcaagta ttttcttacg atggagatat cgacactatt ttatcgccaa
     1441 tagattcaat tcgatatcac aaatactttt tacgctgtgg atttatgtca atggacccac
     1501 ataatggtaa tgtgaaagct tatatcggtg gacctgattt tagtcaattt caatatgata
     1561 tggtcaatgt ggggcgtcgt cagattggtt ctacagtgaa accatatctt tatacgctgg
     1621 ctatggaaga aggcatgtgg ccatgcgata aaactgcctg gcagccaatt tcgttaccgg
     1681 atggtacagg taaattgtgg tcaccaaaaa ccacaacgaa aggaaaatca attggtgata
     1741 tcgtaacctt acgctggggt ttagccaatt ccgacaactg gatttcgggg tatttaatga
     1801 gcttgtttac acccaatgct ttaataaaac ttatgcgttc attcggcgtg aaaggctatt
     1861 tgcctccggt agtatccctg tgtttaggtc cttgtgagat ttcagttgcc gaaatggttg
     1921 atgcatatac ggcatttgca aataaaggaa tccgagtgga accggtttat gtaacccgca
     1981 ttgaagacgc caatggaaat gtgatcggaa aattcacccc tcaaatgcat gagatattta
     2041 gtgaatcaac cgcctacaaa atgatctaca tgatgcgtgg agttattgac ggtggtaccg
     2101 gtagccgtat tcgcagccgt tacgggttga caatgccaat gggcggtaaa acaggaacaa
     2161 ctcagaacaa ttctgatggt tggtttatgg ggtatacacc atcattggtt tccggagttt
     2221 gggttggtgg tgaagaccgt tccattcact tcgataacat tgccgaaggt cagggagcaa
     2281 gtatggctct tcctatttgg gcattgtaca tgaaaaaagt gttagcagac caggatttag
     2341 gttattcgtc aaacgaacaa tttgacatcc cggcttcatt caatgccaat gccggttgcg
     2401 atgtagaagt tacagaacaa taaaatcagg tttataacag acattgattt acaaaaaaca
     2461 tataaaggct gtaaatgaag ttaaggaata tcgtttaatt taactcgtta agtacctttg
     2521 tctcattaac tcattttttc aacaaatata agtacttgaa aagatttttc ttcataacca
     2581 tttgtatgtt atgccaggtt tttgccatgg cacaatggga tacagaccgc attttgacca
     2641 ttggtagata tgcgctgtct tttgaagact atgtactttc catccaatac tttaatcagg
     2701 tcattaaaat aaaaccttat ctggcagaac cctatctcta cagggctatg gctaaaattg
     2761 aactgggtga ttatcaggga gcagatcagg attgcacgga tgcgattgaa cgtaatccgt
     2821 tcattcccca ggcttattac gctagaggat ttgcacgtaa aaacatggag ttttacaagg
     2881 aagctacagc cgacttcaca aaggcccttg agttcagtcc ggatgctttg tatttgctga
     2941 tgaacagaat ggattcgcgc gagaagagtg aagattatca gggtgcaatg agcgatctgg
     3001 atttgtatat gcgattaaat tcaaagaatt taaatctgta ttacgaaaaa gggaggcttc
     3061 aactcgctat gaaagatacc gttggtgctg agaagacctt taatcgttac attgagcttg
     3121 atagtatcag cagctttggc tggagtgccc gtgcattgct gaaaatgcag aaaaatgatc
     3181 gagaaggggc tttaaaagat tacactcaag ctattaaaca caactccact tattttggcg
     3241 attatataaa ccggggaatt ctaaacgttc agactaaaaa ttacaaacag gctttgacag
     3301 attataataa cgcaataaag tatgataaat ccagcgcttt agcctattac aatcgggggc
     3361 tcttacgggc taatctgggt gacaataaca acgcactgag cgacttgaat atggttatga
     3421 aactggattc gggtaataat gaagcattat tgcaaaaggc cggccttgaa ataaccttgc
     3481 gcgactacca cagcgctatc agagattaca aactgataat aaaaaaatat ccttatttta
     3541 ttccggctta cttaggcatt gccgaagccg aagatgccat gggaaatgag aaaggtgcgt
     3601 ttcaataccg ccaaatggcc agcaatatag aaaaaaacaa ggattacatc aatcgtaaat
     3661 caaaagagag cattaaagcg acaaataaaa tggttgcaac ggctcaacaa ggctctacag
     3721 gacgtaaaac aattcttttc aaccgctttg cagatcaaaa tacggataac gatgttgaaa
     3781 cagaaacaaa atatgcggat gataaaacac gtggagccgt tcagggcaaa tacacagatg
     3841 tagttaacga gaaaaatttt gcgttgactt attacgccaa aacagatgaa attcgtcgta
     3901 caaacacata ttactcagcc cttgaccaat ataataaact gaagaaactc agcagtatct
     3961 taaaaataac gaataatgag ttggcgctga cagctgaact gataaatggt cattttgagg
     4021 ctataaatga aatttcaaca cgattggggc aggataatac aaatgcggat atttacttta
     4081 accgggc
//
LOCUS       DATDNM010000485         3702 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1024135, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000485 DATDNM010000000
VERSION     DATDNM010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3702
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1024135"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1729)
                     /gene="pulA"
                     /locus_tag="VI413_08240"
     CDS             complement(<1..1729)
                     /gene="pulA"
                     /locus_tag="VI413_08240"
                     /EC_number="3.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005862971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051060 - pullulanase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I pullulanase"
                     /protein_id="HEY6914650.1"
                     /translation="MNRHTLFMLVISALFCGCNKTPQYKTFDEYPVYEGSDLELIYSP
                     QSCKFRVWAPTASGVKLLLYDNGYEGGAYETIDMKRAEQGTWTLNVDKPLKGKFYTFQ
                     VRIGEKWLEETPGAWVKATGVNGKRAAIIDFAETNPSGWENDVRPPLKDFTDITLYEV
                     HVRDFSISPNSGMKNKGKFLAFTERGTKNSAGEATGIDHLKELGITHVHLLPSFDFAS
                     IDETKLHEKKYNWGYDPLNYNVPEGSYSTNPNDPVVRIREFKQMVQSLHKSGIRVIMD
                     VVYNHTAVGKGSHLDLLAPGYFYRINADSTWSNASGCGNETASERGMMRKLMIESVVY
                     WATEYHVDGFRFDLMGIHDIETMNEIRAALDKIDPTIFIYGEGWTAAASPLAEAKRAV
                     KKNAKQLNNIAVFSDDIRDAIKGSWMHAEIPGFVSGIDSLEESIRFGVVGATQHPHVD
                     YTKLIYSKAPYVNNPTQIINYVSCHDDMCLVDKLKESKPADATDDELVRFNKLAQTIV
                     YTSQGVPFMYAGEELYRNKKGIHNTYQSPDSVNQIDWNFKTTHKDILDYYKGLIALRK
                     GHSAFRIPTQ"
     gene            complement(1752..>3702)
                     /locus_tag="VI413_08245"
     CDS             complement(1752..>3702)
                     /locus_tag="VI413_08245"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HEY6914651.1"
                     /translation="ITNPQAPTFENTIVALENTGKLLSKVSSPFYNLLSSETTDELQD
                     IAEKISPLLTEHSNSISLNEKLFARVKAVYDQKDNLKLTPEQQMLLQNTYDGFADNGA
                     NLSDADKAIYRELSKDLNMLTLQYGQNVLKETNKYSLLITDKKLLGGLPADFMDMLAS
                     NAKKAGKEGWMLNLKTTTYVPFMKYADNRDLRHELYIASSTRCMTGGEYDNRETVRKI
                     ANTRLKIANLLGRKSYADHVLKHRMAENKQHVYDLLDKLLAAYKPAAEKEYAEVQEYA
                     DNHGAYFKLQPWDWSYYSEKLKDEKYSVNDEMLKPYFELEHVKKGVFGLATRLYGIHF
                     TKNTKIPVYNPEVDAYDVTDENGKFLAVLYTDFHPRDGKRAGAWMNDFKAQWLDGKTD
                     SRPHITIVMNFTRPTSTKPALLTFDELTTFLHEFGHSLHGMLTKCTYESLSGTNVYRD
                     FVELPSQVMENWGSEKEFLDGFAVQYLTGEKIPAELIQKIKASENFNIAYFCLRQLSF
                     GYLDMAWHTLEKPFEGDVIDFEKEAMASTQILPVIPNTGMSPTFSHIFSGGYAAGYYS
                     YKWAEVLDADAFSVFSKNGIFDKKTAESFRKNILTKGGTEQPMVLYKRFRGQEPTIDA
                     LLKRNGIVAQPVSKLSSKAENNKTL"
BASE COUNT         1007 a          830 c          720 g         1145 t
ORIGIN      
        1 cctgcgttgg aatacggaaa gccgaatgcc ctttgcgcaa agctatcaac cctttgtaat
       61 aatccagaat atctttatga gtggttttga aattccagtc gatctgattt accgaatcag
      121 gcgattgata cgtgttatga atgccttttt tattacggta aagctcttcg ccggcataca
      181 taaacggaac gccctgcgaa gtatacacaa tagtttgcgc cagtttattg aagcggacca
      241 gctcatcatc agtggcatcg gccggtttcg attccttcaa tttgtccacc aggcacatat
      301 catcgtgaca cgaaacataa ttgataatct gtgttggatt atttacatac ggagcttttg
      361 agtaaatgag tttggtgtaa tctacatgcg gatgctgagt agcgccaaca actccaaaac
      421 ggatgctttc ttccaaactg tcaatgcctg aaacaaaccc gggaatttca gcatgcatcc
      481 aactaccttt aatagcatcc cgaatgtcat cgctgaacac ggctatgtta ttcagttgtt
      541 tcgcattctt ttttacagcc cgtttggctt cggcaagtgg agatgcagct gccgtccaac
      601 cttcaccata gataaaaatg gtcgggtcaa tcttatccag cgctgcacgt atttcattca
      661 tggtttcgat atcatgaatg cccatcaggt cgaaccggaa accatccaca tgatattctg
      721 tggcccaata aacaacagat tcaatcatga gtttacgcat cattccgcgt tccgaagctg
      781 tttcgttacc gcatcccgaa gcattcgacc aggtactgtc ggcatttatc cgatagaaat
      841 aaccaggtgc caacaaatcc aaatgagaac cttttccaac cgcagtatgg ttataaacca
      901 catccataat cacgcgaatg cctgatttat gtagcgattg caccatttgt ttgaattcac
      961 ggattcgcac aaccgggtcg ttaggattgg tagaataact tccttccgga acattgtaat
     1021 tcaacgggtc gtaaccccag ttatattttt tctcgtgcaa tttggtttca tctatcgaag
     1081 caaaatcaaa cgaaggtaac aaatgaacat gagtaattcc taattctttc agatgatcga
     1141 ttcctgttgc ttctcccgcg gagttcttgg ttccccgttc cgtgaaagca agaaacttac
     1201 ctttgttttt catgcctgaa ttcggcgata ttgaaaaatc gcgcacatgt acttcgtata
     1261 gcgtgatatc tgtaaagtcc ttaagcggcg gacgcacatc attttcccaa cccgacggat
     1321 ttgtttcggc aaagtcaata atggcagcac gttttccatt tacaccggtt gcttttaccc
     1381 atgctccggg tgtttcttcc aaccattttt cgccaattcg tacctgaaaa gtatagaatt
     1441 tacctttcaa tggtttgtca acattaagcg tccacgttcc ctgctctgca cgtttcatat
     1501 caatcgtttc atacgcaccg ccttcgtaac cattatcata cagaagcaac ttaacgcctg
     1561 aagcagtagg agcccaaacc ctgaatttac aggattgtgg tgagtatatc agctccaggt
     1621 ccgagccttc ataaacagga tattcatcga aagttttata ttgcggtgtt ttgttacaac
     1681 cacaaaataa tgcggaaatc actaacataa ataacgtatg tctgttcata attagttgaa
     1741 atatgattcg cttataaagt cttattgttt tctgctttgg aagataattt ggaaaccggt
     1801 tgtgctacaa ttccgtttct tttgagcaac gcatcaatag ttggttcctg cccgcggaaa
     1861 cgtttataca aaaccattgg ttgctctgtt ccacctttag tcaggatatt tttgcggaat
     1921 gattcagccg tttttttatc gaaaattcca ttttttgaga atacagagaa tgcatctgca
     1981 tcaagcactt cagcccactt gtagctgtaa taaccggcag cataacctcc tgagaaaata
     2041 tggctgaaag tcgggctcat gcctgtattt ggaattaccg gtaaaatttg agtcgacgcc
     2101 atagcttctt tttcaaaatc aatcacatcc ccttcaaacg gtttttccaa tgtatgccat
     2161 gccatatcca aatatccgaa acttaactgg cgaagacaga aataggcaat attgaaattc
     2221 tcagaagctt taatcttttg aatcaattcg gcaggaatct tctcaccagt gaggtattgc
     2281 acggcaaaac catccagaaa ttctttttcc gaaccccaat tctccataac ctgagatgga
     2341 agctccacaa agtcacggta aacattagtt cctgaaagcg attcgtaagt acatttagtc
     2401 aacattccgt gcaatgaatg accgaattcg tgcaaaaacg tagtcaattc atcaaatgta
     2461 agcaaagccg gtttcgtact tgtgggacgg gtgaagttca tcacaatggt aatatgcgga
     2521 cggctgtcgg ttttgccatc caaccattgt gctttgaaat cattcatcca tgcaccggca
     2581 cgtttaccat cgcgcggatg gaaatcggtg taaagcactg caaggaattt accgttttcg
     2641 tcagttacat cgtatgcatc aacttcggga ttgtatacag ggatttttgt attctttgtg
     2701 aaatgaatgc catacaaacg ggtagcaaga ccgaaaactc cttttttcac atgttccagt
     2761 tcaaaataag gtttcagcat ttcgtcgttc accgaatatt tttcatcctt cagtttttca
     2821 gaataatatg accaatccca cggttggagt ttaaaatacg ctccatgatt gtcagcatac
     2881 tcctgaactt cggcatattc cttttctgct gccggtttat aggcagcaag taacttgtcg
     2941 agcaggtcat atacatgttg cttgttctct gccatccggt gtttcaacac gtgatcggca
     3001 tacgatttac gtcccagaag attggcaatt ttcaatcggg tattagctat tttccttaca
     3061 gtttcgcggt tgtcatactc tcccccggtc atgcagcggg tagaactggc tatatacaat
     3121 tcatggcgca gatccctgtt atcggcatat ttcatgaatg gaacgtaagt ggttgttttc
     3181 agattaagca tccaaccctc ttttcctgct tttttggcat tcgatgccaa catatccatg
     3241 aagtcggcag gcaaaccacc cagcaatttt ttatccgtta taagcaaact gtatttgttg
     3301 gtttccttca acacgttttg tccgtactga agcgtcaaca tattcaggtc tttggacaat
     3361 tcgcggtaaa tagctttgtc tgcatccgag aggtttgccc cattgtcggc aaatccatca
     3421 tacgtgtttt gcaaaagcat ttgttgctcg ggagtaagtt tgagattatc tttttgatca
     3481 taaactgctt ttactcgcgc aaaaagtttt tcattcagac tgatagaatt gctgtgttcg
     3541 gtcaaaagcg gagaaatttt ctcagcaata tcctgtaatt catcagttgt ctcggagctt
     3601 agtaaattat agaaaggtga acttactttg ctcaataatt ttcctgtatt ttccaacgca
     3661 acgatcgtat tttcgaaagt tggtgcctgt ggattagtta tg
//
LOCUS       DATDNM010000486         4494 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_917896, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000486 DATDNM010000000
VERSION     DATDNM010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4494
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_917896"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..475
                     /gene="rnpA"
                     /locus_tag="VI413_08250"
     CDS             92..475
                     /gene="rnpA"
                     /locus_tag="VI413_08250"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009125522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEY6914652.1"
                     /translation="MNHPNSFSKPEHLCGEKRITRLFTQGDAFIAYPLRVVYLIEPKK
                     DNAAASIMVSVPKKRFKRAVKRNRLKRLMREAYRLNKQELSEKLNEKELQIHVAFNYV
                     SDEVLDFAQIEKKMKVALQRLIEKI"
     gene            552..773
                     /gene="yidD"
                     /locus_tag="VI413_08255"
     CDS             552..773
                     /gene="yidD"
                     /locus_tag="VI413_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEY6914653.1"
                     /translation="MKKILQFIVLLPVYFYRYSISPLFPARCRYTPTCSQYTIEAIKK
                     HGIIKGGWLSIKRISSCHPWGGSGYDPVP"
     gene            887..1975
                     /gene="lpxK"
                     /locus_tag="VI413_08260"
     CDS             887..1975
                     /gene="lpxK"
                     /locus_tag="VI413_08260"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008645059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEY6914654.1"
                     /translation="MKKHAKHIALYPFSLLYGLATGIRNWLFENEILPSTRFNIPIIS
                     VGNLAVGGTGKTPHTEFILSVLQDEWKTAVLSRGYKRKTKGFHLADENSNSLILGDEP
                     FQIHQKFPKVTVSVDEKRVHGVRKLQSLLPDLQLVVLDDAFQHRYIHAGMSILLTDYA
                     NIYTRDLLLPAGSLREWHHGSKRANIIVVTKCPLDLSPIDMRVIEMELKPENNQLVFF
                     SSFVYDELKPVFPEAIAEKITLAELKEQNAGVLLVAGIVSPEPIVEYLKKFTENIETL
                     FYGDHHAFQPKDFNHITNKFDAISATEKILLVTEKDAARLLSNPNFPEKLKSKTYALP
                     IRVEILHNQESLFIQKIKNYVVENSRNR"
     gene            1947..2753
                     /locus_tag="VI413_08265"
     CDS             1947..2753
                     /locus_tag="VI413_08265"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010539088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004731 - purine-nucleoside phosphorylase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEY6914655.1"
                     /translation="MLLKIQETADFLRTRIATNPKTGIILGTGLGNLVTQITEKNEIP
                     YEIIPNFPVSTVEGHSGKLIVGKLGGVDVLAMQGRFHYYEGYDMKAVTFPVRVMKALG
                     IETLLVSNASGGMNPDFEIGDLMIITDHINLFPEHPLRGKNFTELGTRFPDMSEAYSK
                     ELIAKAKQIAAKHNIKVVEGVYVGTTGPTFETPAEYRYFRTIGGDAVGMSTVPEVIVA
                     NHAGLKCFGISIVTDLGVPGKIVEVTHEEVQEIGNSVQPLMTLIMKELIS"
     gene            2899..3630
                     /locus_tag="VI413_08270"
     CDS             2899..3630
                     /locus_tag="VI413_08270"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head GIN domain-containing protein"
                     /protein_id="HEY6914656.1"
                     /translation="MKKKNVFVLLFTTSILFLFTSCVSDWFGVTGKGNMVTESRTAID
                     FQSVQLLTSANVTIVKDTMFKIEVEDYENIVKYISAKVVLKNLVISIDPVSTILLKSE
                     AKVRVTMPDSLIGLTVAGSGHIDVDSSFKDIKTLLITGSGDINLNKAGNLSKLTATIT
                     GSGNMNAKGNVITLTALTSGSGNMNFEDLVAEDATCTISGSGNMYVNVTKTLKATIPG
                     SGKIEYSGNPTVTENITGSGSVVKK"
     gene            complement(3706..>4494)
                     /locus_tag="VI413_08275"
     CDS             complement(3706..>4494)
                     /locus_tag="VI413_08275"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEY6914657.1"
                     /translation="DRIMEIGFLLLGIMAGIMSGLFGIGGGIIMVPALVALFGMDLLD
                     ANATSLAAMLLPVGIFGVINYYRAGYINLKDSLWISLGLFGGSFLGAELAVSVNVSLL
                     SKLYAGILLYVAVGYFDIPSLLKRKKAGSITDPGTEAVASHKIWQFILLGLCAGVFAG
                     LFGKGGGLVIVPALVRIFHYDARAASATSLAALQLPVGLPSVIVYANDGHLNLIFAGL
                     IALGILLGAFFGSKLALNLPTSIFKKIYAVFLLGVAVYMVVKYI"
BASE COUNT         1454 a          948 c          902 g         1190 t
ORIGIN      
        1 agcacgaaaa taaaatcgtt tcgtaagaat tatactatcc caagagtatc gaagattttc
       61 cgtacttttg ggatagtttt attttacagc aatgaaccac ccgaattcat tttccaaacc
      121 ggagcattta tgcggcgaaa aacgcattac ccggttattt acgcaaggcg atgcatttat
      181 cgcctacccc ttgcgtgtgg tttatctgat tgagccgaaa aaagacaatg cagcggcaag
      241 cattatggta agcgtcccca aaaaacgctt taaacgcgcc gtaaaacgta accgcttgaa
      301 acgcctgatg cgagaagcat accggttgaa caaacaagaa ctttcggaga aactgaatga
      361 aaaagaattg cagattcatg tggctttcaa ttatgtctcg gacgaagtgc tggattttgc
      421 ccagattgaa aagaaaatga aagtagcgct gcaaaggctg attgaaaaga tttgaatttt
      481 tcaaccataa ttcatgccgg gacaaacaaa cgctccatta atttgttaat tacaaacaga
      541 ttaaactatc aatgaaaaaa atactccagt ttattgttct gcttccggta tatttttatc
      601 gctacagcat ttcgcccctt tttccggcgc gatgccgcta cacccctacc tgttcgcagt
      661 ataccatcga agcaattaaa aaacacggta ttataaaagg aggatggtta tccataaaac
      721 gcataagcag ctgccatccc tggggcggaa gcggttacga tcccgtaccc tgaatatcgc
      781 tgacttttta aagtttgaac tcttgaaaag tgagtacaag tagtttctta ttaagaaaaa
      841 ttgtatcttt gtcattcagt tcattttccg taaaaatgta tttctattga aaaagcatgc
      901 aaaacatatt gccctttatc ctttttcgct cctttacgga ttagcgacag gcatacgtaa
      961 ttggcttttt gagaatgaga tactcccttc cactcgtttt aatatcccca taatttctgt
     1021 tggtaacctc gccgtaggcg gcacaggcaa aacacctcat acagagttta ttctgtctgt
     1081 attacaagac gaatggaaaa cggccgtact aagccgtgga tataaacgca agacaaaagg
     1141 attccatctg gccgatgaaa attcgaacag cctgattttg ggtgacgaac catttcagat
     1201 tcaccagaaa ttccccaaag tgactgtttc ggtcgacgaa aagcgggtgc atggtgtccg
     1261 gaaattacaa tcactcctac ccgatttaca attggtggtg ctcgatgatg catttcaaca
     1321 tcgctatatt catgcaggaa tgtcgatact gcttaccgat tacgccaata tttacacacg
     1381 cgatttactt cttccggcag gcagcctccg cgagtggcac catggaagta aacgggccaa
     1441 tataattgtg gttacaaaat gtccgttgga tctttcaccc attgatatgc gggtaattga
     1501 aatggaattg aaacccgaaa ataaccaact ggtatttttc tcctctttcg tttacgatga
     1561 gttgaaaccg gtatttcccg aggctatcgc tgaaaaaata acattagctg agctcaagga
     1621 acaaaatgca ggtgtattgc tggttgccgg gattgtgtca cccgaaccta ttgttgaata
     1681 cctgaagaaa tttaccgaaa atattgagac gctgttttat ggtgatcatc atgcctttca
     1741 gcctaaagat ttcaatcata taaccaacaa gttcgacgct atttccgcaa cagaaaaaat
     1801 actgctagta acggaaaaag atgctgcgcg cctgctctca aatccaaatt ttcccgaaaa
     1861 attaaaatca aaaacttatg ctttgcctat ccgggtagag atactacata atcaagaatc
     1921 attattcatt caaaaaatca aaaactatgt tgttgaaaat tcaagaaacc gctgatttcc
     1981 tgcgtacaag aatcgcaacg aatccaaaga cgggtataat tttaggtacc ggactaggca
     2041 acctggtaac tcaaattaca gaaaaaaatg aaattcctta cgaaataata cccaattttc
     2101 cggtgtcgac tgttgaagga cacagcggca aactgattgt cggtaagctc ggcggagtgg
     2161 atgtacttgc catgcaggga cgttttcact attacgaagg ctacgatatg aaggcagtta
     2221 cttttccggt acgcgtaatg aaagcgctgg gcattgaaac attgctggtt tcgaatgcat
     2281 cgggcggcat gaatcccgat tttgaaattg gggacctgat gattattacc gaccatatta
     2341 acctgtttcc ggagcatccg ttgcgtggca aaaacttcac tgaactgggc acacgcttcc
     2401 cggatatgag cgaagcttat tcaaaagaac tgattgcaaa agcgaaacaa atagccgcca
     2461 aacacaacat caaagtggtg gaaggcgttt acgtgggtac aacaggtcct acattcgaaa
     2521 cacctgccga ataccgttat ttccgcacta ttggaggcga tgcggtagga atgagtactg
     2581 ttcccgaagt aattgtggca aatcatgccg gcttaaaatg ctttggaatt tcgatagtta
     2641 ccgatctggg cgttcccgga aaaattgtgg aagttaccca cgaggaagtt caggaaatag
     2701 gtaactcagt acaaccgctc atgactctca tcatgaaaga attgataagt tagcgatcaa
     2761 tgattagtga ttaatttatt gaaaaaataa atcacattta aaccgtttag ccagagttaa
     2821 ttttgtcatt attttcgttg cagcctgttg ataattttgc acaaataata ttaaaaataa
     2881 cttcaaattt tattccttat gaaaaagaaa aatgtttttg ttttattgtt tacaacatct
     2941 attttgtttt tatttacatc ttgtgtttcc gattggtttg gtgtaaccgg caaaggaaat
     3001 atggttacag aaagtcgtac tgccatagat ttccaatcag tacagctcct tacttcagcc
     3061 aatgtcacta tcgtcaaaga cacaatgttc aaaatagagg tggaagatta tgaaaatatt
     3121 gtaaaatata tttcggcgaa agttgttttg aagaatctgg tgatttctat tgatccggtt
     3181 tctaccattc tactcaaaag tgaggctaaa gtgagagtta caatgcccga ttcgcttatt
     3241 ggtcttaccg tggcaggaag cgggcatatt gatgttgatt cttcatttaa agacatcaag
     3301 acgttgctta ttaccggaag cggggatatt aatctgaaca aagcaggaaa tctgagtaaa
     3361 ctgactgcaa ccataaccgg aagcgggaac atgaatgcaa aagggaatgt aataacgctt
     3421 acagccctaa cctcaggaag tgggaatatg aatttcgagg atctggtggc tgaagatgct
     3481 acatgcacga ttagcggtag tgggaacatg tacgtaaatg tgacaaaaac actgaaagca
     3541 accattcccg ggtctggaaa aattgaatat tcaggcaacc ctaccgttac cgagaatatt
     3601 accggaagcg gaagcgtagt taagaaataa aatagcagta aatacaacaa aggggaatta
     3661 caatatgtag ttccccttta ttatctatta tatttccctg cccaactata tatatttcac
     3721 caccatatac accgccactc cgagcagaaa aacggcatat attttcttga aaatggaagt
     3781 tggtaggttc agggccagct ttgaaccaaa aaatgcaccc aacaaaatac caagagctat
     3841 taatccggca aaaatcaaat taaggtgccc atcgttggca taaacaataa cgctgggaag
     3901 tcccaccggt aactgaagtg cggcgagtga tgtggccgaa gcagcccttg catcgtaatg
     3961 aaaaatcctg acgagagcgg gcacaataac caatccaccg cctttaccaa aaagccctgc
     4021 aaaaactccg gcgcaaagac ccaacaggat gaattgccag atcttatgcg aagcaactgc
     4081 ttcggttcct ggatctgtaa tggaaccggc tttttttcgc ttcagaagtg acgggatatc
     4141 aaaataacca accgccacat acaacaaaat tccagcgtag agtttggaaa gtaagcttac
     4201 attcaccgat acagccagct cagctcccaa aaatgacccg ccaaacaaac cgagtgaaat
     4261 ccaaagcgaa tccttcaggt taatatatcc agctctataa taattgatta caccaaaaat
     4321 acccaccggc aaaagcatgg cagccaacga ggtagcattt gcatcgagca agtccatacc
     4381 aaaaagtgcc accagagcag ggaccataat aattccgcca ccaatcccaa acaagccgga
     4441 cattattcct gccataatac ccagcaataa aaaacctatt tccataatcc tgtc
//
LOCUS       DATDNM010000487         2075 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1024529, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000487 DATDNM010000000
VERSION     DATDNM010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1024529"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1731
                     /locus_tag="VI413_08280"
     CDS             <1..1731
                     /locus_tag="VI413_08280"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HEY6914658.1"
                     /translation="IADLYNISMDSTKLNKDGYEPIKAELQRISALKNKEELVKLMPD
                     LYLSGVDTYFAISVDADQMSSKENLVQTYQSGISLGEREYYLDNDAHTKEIRDKYKQH
                     VIKMFKLVGFTDAQAKANMEAVLKIETRLATAAYDNVKLRDPHANYNKMTVAELQKLV
                     PAINWTEYLNALGLKNTKQLSVSQKESLVEVGKIIESEPIQSQIAYLQWKLIDESASY
                     LSDAIYAQNFDFYGKVLSGKKEQRPRWKRSVDMVDGVLGEAVGQMYVKKYFPPAAKER
                     MLKLVGNLQKSLGERINALPWMGDSTKAKAQEKLGTFYVKIGYPNKWRDYSKLEINKD
                     SYFANIQRSNRFDHAYNFGKAGKPVDKDEWLMTPQTVNAYYNPTTNEICFPAGILQPP
                     FFDMNADDAFNYGAIGVVIGHEMTHGFDDQGCQFDKDGNLKNWWTAADKKNFDARAKV
                     MADYFDSIVVAPGVHGNGKFTLGENIADHGGLQVSFNAFKTATAAQPLAKEDGFTPEQ
                     RFFLSYANVWAGNIRPEEILKLTKSDPHSLGRWRVNGALPHIQAWYDAFGIKADNKLF
                     VPVEKRVSIW"
     gene            complement(1817..>2075)
                     /locus_tag="VI413_08285"
     CDS             complement(1817..>2075)
                     /locus_tag="VI413_08285"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914659.1"
                     /translation="GTVTGLPETTINTISLYPNPVNDGFYIQNADRSIESVSVYDLRG
                     IEIFSQQVIGNYVNTINLKHGVYIVKLKTADEIIEKKIVKN"
BASE COUNT          650 a          373 c          426 g          626 t
ORIGIN      
        1 attgccgatt tgtataacat atccatggat agcacgaagc tgaataaaga tggatatgag
       61 cctatcaaag ctgaattaca acgcatttcc gcacttaaaa acaaagaaga actggtaaaa
      121 ttaatgcctg atctctattt atcgggtgtt gatacctatt ttgctataag cgtagatgcc
      181 gaccagatga gcagtaaaga aaatctggtt cagacttatc aaagtggcat tagtttgggc
      241 gagcgtgaat attatctgga taatgatgca cataccaaag agattcgcga taagtataaa
      301 caacacgtaa tcaagatgtt taaacttgtt ggatttactg atgctcaggc taaagccaat
      361 atggaagctg tgctgaagat tgaaacccgt ttggcaactg cagcttatga taacgtaaaa
      421 ctgcgcgatc ctcatgccaa ttataataaa atgacggttg cagaacttca gaaacttgta
      481 cctgccatta actggaccga atacctgaat gctcttggtc tgaaaaatac aaaacagttg
      541 agtgtttctc aaaaagaatc attggttgaa gttggtaaaa tcattgaaag cgagccaata
      601 caaagccaga ttgcttattt gcaatggaaa ttgatagatg aatcagccag ttatctgagc
      661 gacgctattt atgcacagaa ctttgatttt tacggcaagg ttttgtctgg taaaaaagaa
      721 caacgtccac gctggaaacg ctctgttgat atggtagatg gcgttttagg cgaagctgta
      781 gggcagatgt atgtcaaaaa gtattttccg ccagctgcca aagaacgtat gcttaaattg
      841 gtaggcaatt tgcaaaaatc attgggcgaa cgtatcaatg cattgccttg gatgggtgat
      901 tctaccaaag ccaaagcaca ggaaaaactg ggaactttct atgtaaaaat aggttatccg
      961 aataaatgga gggattattc aaaacttgaa atcaataagg attcttattt tgccaatatc
     1021 caacgttcaa accgtttcga ccatgcttat aatttcggaa aagcaggtaa acctgttgac
     1081 aaggatgaat ggttgatgac tcctcaaact gtaaatgcat attacaatcc aaccactaac
     1141 gaaatttgct tccctgcagg tattctgcag cctccattct ttgatatgaa tgccgatgat
     1201 gctttcaatt atggagcaat tggtgtggtt attggacatg aaatgacaca tggttttgac
     1261 gatcagggtt gccagttcga taaagatggt aaccttaaaa actggtggac tgctgctgat
     1321 aaaaagaatt tcgatgcccg tgcaaaagtg atggctgatt atttcgattc aatcgttgtt
     1381 gctccagggg ttcatggcaa cggaaaattt acacttggtg aaaatattgc cgatcacggc
     1441 ggtttacagg tatcctttaa cgcgtttaaa actgcaactg ctgctcaacc gttagcaaaa
     1501 gaggatggat ttacgccaga acaacgtttc ttcctttcat atgccaatgt atgggcagga
     1561 aatatccgtc ctgaagagat tttgaagctg actaagtcag accctcactc acttggcaga
     1621 tggcgcgtaa acggcgcttt accgcatatt caggcatggt atgatgcctt cgggattaaa
     1681 gctgataata agttgtttgt tccggttgaa aaacgggttt ctatctggta attttcagta
     1741 actataattt aaaacaggct gctacatttt tacttgtagc agcctgtttc gttttgaata
     1801 atttactttc tataaattag tttttcacta ttttcttttc aattatttca tcagcagttt
     1861 ttaattttac aatatatact ccatgtttca ggttaattgt atttacataa ttaccaataa
     1921 cttgctggct gaatatctca attccacgca aatcataaac tgacacagat tctatagatc
     1981 ggtctgcatt ttgaatatag aaaccatcat ttaccgggtt aggatacaaa gaaattgtat
     2041 ttatagtcgt ttccggtaac ccggttactg ttccg
//
LOCUS       DATDNM010000488         3076 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1024602, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000488 DATDNM010000000
VERSION     DATDNM010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1024602"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="VI413_08290"
     CDS             complement(<1..338)
                     /locus_tag="VI413_08290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914660.1"
                     /translation="MTYTITNLPTNPGNKNVKKSSLYGLLGSALSCIILFLIMWFYVM
                     PYTAIVQPVEEEGLMISFGNSDDGGGVGEELMGTPNEDPAPSKIEETTTTTTKPEPVT
                     RPIQTTTTSV"
     gene            complement(419..1132)
                     /locus_tag="VI413_08295"
     CDS             complement(419..1132)
                     /locus_tag="VI413_08295"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEY6914661.1"
                     /translation="MTKLSVNINKIATLRNARGGNTPNVCQVALDCERFGAHGITVHP
                     RPDERHIRYQDVWDLRPILKTEFNIEGYPSPEFIKLVKSVKPHQVTLVPDPPEAITSS
                     AGWDTVTHLEFLKEVVADFQSAGIRVSIFIDTDLKNIEYAAKTGTDRVELYTEPYATN
                     YPKDREKAAAPFVEAAKLAKKLGLGLNAGHDLSLENLAYLHSMIPWLDEVSIGHALIA
                     DALYFGLEDTIKRYKKQLE"
     gene            1472..2344
                     /locus_tag="VI413_08300"
     CDS             1472..2344
                     /locus_tag="VI413_08300"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEY6914662.1"
                     /translation="MKIAVFGNIYRPVILSHIELLFNYFKDKDVTLLLDSVLYEFVRE
                     KDKCCMERTEIITDNDFEADLALSIGGDGTFLNTAARIGRKNIPILGINTGRLGFLAD
                     VASEDILPALDAILSNKYITQERSLLYVETSDGTTFDYPYALNEISVLKQDSSSMISI
                     TASVNGEMVHTYHADGLLVSTPTGSTAYSMSVGGPLVVPEAENFILTPIASHSLNVRP
                     LIVPDTWTFELEVHSRSQCYLVALDGRSKVLELTTKLKITKADYTIKIIKQMNHTFFD
                     TLKNKLLWGVDKRN"
     gene            2390..>3076
                     /gene="fmt"
                     /locus_tag="VI413_08305"
     CDS             2390..>3076
                     /gene="fmt"
                     /locus_tag="VI413_08305"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005858220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEY6914663.1"
                     /translation="MRIVFMGTPDFAVESLKILVENKYNVVGVITMPDKPAGRGHKMQ
                     YSSVKQYALEQNLRLLQPEKLKEEAFLEELRSLQADLQIVVAFRMLPEVVWDIPKYGT
                     FNLHASLLPQYRGAAPINWAIINGEKETGATTFFLTHEIDTGKIIMQEKIQITESDNA
                     GTIHDKLMTMGAGLVKKTVDMLIEGKTDAVDQAQFIHEGLELKAAPKIFKETCEIDLS
                     WNVEQAYNFVR"
BASE COUNT          938 a          602 c          602 g          934 t
ORIGIN      
        1 tttacgctag ttgtagttgt ttgtattggt ctggtaacag gttcgggctt agttgtagtt
       61 gtagttgtct cttctatttt cgaaggtgca ggatcttcat tcggagttcc cattagttcc
      121 tcccctactc caccgccatc gtcactgttt ccgaagctaa tcatcaaacc ttcttcctca
      181 acaggctgaa cgattgctgt ataaggcatt acataaaacc acattatcaa aaacaagatg
      241 atgcaagata atgcagagcc aagcaaacca tataaacttg attttttcac gtttttattt
      301 cccggattgg ttggtaaatt agtgattgta taagtcattt ctgtaattga ttattttttg
      361 agtcatattt tttgtcgact ttgaagtcag caaaattcat acctcaaatt tgacacatct
      421 attctaactg ctttttataa cgctttattg tgtcttccag tccaaaatat aatgcatcag
      481 caataagtgc gtgcccaata gacacttcat cgagccaggg aatcatggag tgcaaataag
      541 ccagattctc gaggcttaag tcatgtcctg cattgaggcc aagaccaagc tttttagcta
      601 gctttgcggc ttctacaaaa ggcgcagcag ccttttcacg gtcttttggg taattggtag
      661 cataaggttc tgtatacaac tccacccggt cggttcctgt tttagctgca tattcaatat
      721 tcttcaaatc tgtatcgata aaaatagaaa cacgaatacc cgcgctttga aaatctgcta
      781 caacttcttt caggaattcc aaatgagtta cggtatccca accggcactt gacgtaattg
      841 cttccggtgg atccggaacc agcgtcacct gatgcggttt gactgatttt acaagcttaa
      901 tgaattccgg cgaaggatag ccctcaatat taaactcagt tttaagaatc ggacgtaaat
      961 cccatacatc ctgatagcgg atatgacgtt catctggacg agggtgaacc gtaattccgt
     1021 gtgctccgaa ccgttcacaa tcaagggcca cctgacatac attcggtgta tttccaccgc
     1081 gggcattacg caatgtggct attttattga tatttacgct tagttttgtc attattttga
     1141 gattacagtc attaataaat atttcacagt taaataaatt cctttgattg acacatttaa
     1201 ttcaactaaa caagtcgatt tgctttgaga atcagaaatt caacccaacc atcaaacttt
     1261 cgttctttct tgcaggtttc attttcattt agttcctttg caaagtgttt cagacactaa
     1321 atatattttg ctacaaaaat agctaaaaaa aacagaagga aacttcgaga cagttatctt
     1381 tcaatttttt ttaatcattt tcaaagtatt atttaggctt tcggttcaat tgtattttag
     1441 attttgtcat caaaaagaaa atgtcccctg tatgaaaata gctgtttttg gaaatatata
     1501 ccgacctgta attctgtcgc atattgagct tctattcaat tattttaaag ataaagacgt
     1561 aacactcctg cttgacagcg ttctatatga atttgttcgt gagaaagaca aatgctgcat
     1621 ggaacgtaca gaaattataa cggacaatga ctttgaagct gatctggcat tgagtattgg
     1681 tggtgatggc acttttctga ataccgctgc ccgtatcgga aggaaaaaca tacccatact
     1741 cggaattaac accggacgtt tgggtttttt ggcagatgtg gcaagtgagg atattttacc
     1801 ggctctggat gccattctgt caaataaata cattactcag gaaagatcat tgctttatgt
     1861 ggaaacttcg gatggaacta ctttcgatta tccgtatgcc ctgaatgaaa tttcggtttt
     1921 aaagcaggac agttcgtcca tgatcagcat tacagccagt gtaaacggtg agatggtaca
     1981 tacctatcat gctgatggtt tgcttgtttc cacgccaacg ggatcaacag cttattctat
     2041 gagcgttggt ggcccgctcg ttgtacccga agccgaaaac tttattctta ctcccattgc
     2101 ttcgcacagc ctgaatgtac ggccattgat agttcccgac acatggacgt ttgaattgga
     2161 agtgcatagc cgcagccagt gttatttagt agctctggac ggacgttcaa aagtattgga
     2221 gctaacaacg aaattaaaaa taacaaaagc tgactacacg ataaaaatta tcaaacaaat
     2281 gaatcacaca ttctttgaca cgctgaaaaa taaattattg tggggtgttg acaagagaaa
     2341 ttgattaatg tgataatttg ttgatgtgat gatgcgataa ttaaaaaata tgagaatagt
     2401 ttttatgggc acaccggatt ttgcggtgga aagcctgaag atattagtag aaaataaata
     2461 taacgttgtt ggcgtaatta ctatgcccga caaacctgcc ggacgtggac ataaaatgca
     2521 gtattcatct gtaaaacaat atgcccttga gcaaaatcta cgattactac aaccggaaaa
     2581 acttaaagag gaagcttttc ttgaagaatt acgcagctta caagctgatt tacaaattgt
     2641 agtagcattc cgcatgttgc ccgaagtagt atgggatata cccaaatacg gaacattcaa
     2701 cctgcacgcc tcgttgcttc cgcaataccg tggagctgct cctatcaact gggctattat
     2761 caacggagaa aaagaaaccg gcgcaacgac ttttttcctc acgcacgaaa ttgataccgg
     2821 caaaatcatt atgcaggaaa aaattcagat cactgaaagc gataatgcag gaaccatcca
     2881 cgacaaactc atgacaatgg gagctggatt ggtaaagaaa actgttgata tgctaattga
     2941 aggaaaaaca gatgctgtcg accaggctca atttatacat gaaggcttgg aactgaaagc
     3001 tgctcctaag attttcaaag aaacctgtga aatagattta tcatggaatg tagaacaggc
     3061 ttataacttt gtacgc
//
LOCUS       DATDNM010000489         2641 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1879160, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000489 DATDNM010000000
VERSION     DATDNM010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1879160"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VI413_08310"
     CDS             <1..375
                     /locus_tag="VI413_08310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5063 domain-containing protein"
                     /protein_id="HEY6914664.1"
                     /translation="LLGPEVSYLETFHPDMAISDTPIAAFVSENLADIYQELKDFAAN
                     YQLGDIDIMNDALVACLLAFGEHWGQKLLNGLRALHAIRFSDGFGAEDDNEAEASHGK
                     IDRNSFLNFLHDDDEELTNLLK"
     gene            382..1074
                     /locus_tag="VI413_08315"
     CDS             382..1074
                     /locus_tag="VI413_08315"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEY6914665.1"
                     /translation="MFKTKITKDEVNLLPVISFEGKITLVDDLSKIQPAIEELRKSAI
                     VGIDTETKPSFTRGTHHKVSLVQISTLDHCFLFRLNKIDFPAALAEFLADEKIKKIGL
                     SLRDDLNGLNKHHKFKPANCVDIQTIIQSYGILELGLQKIYAILFGKKISKSQRLTNW
                     ENPELTEQQQRYAATDAWASLQIYLQLMAEKKLPKKQLDKILLENALEQRELREQQAA
                     SREAATNTEAQN"
     gene            1115..2302
                     /locus_tag="VI413_08320"
     CDS             1115..2302
                     /locus_tag="VI413_08320"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004301814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HEY6914666.1"
                     /translation="MITIQLKPKKEESLQRFHPWVFSGAIQRIEGKPAEGDLVEVLDS
                     NRNFLAIGHYQIGSIAVRVVSFEALEINDDFWAKKIRNAYAMRKSLGLVAPNLNNTYR
                     LVHGEGDSLPGLIVDVYDDTAVMQAHSIGMHETREILAKAIVANVPEVKNVYYKSETT
                     LPFKAAIEPENGYLIGSENENLKALENGLQFHVDWLRGQKTGFFVDQRENRSLLERYS
                     AGKSVLNMFCYTGGFSVYAMRGGANLVHSVDSSAKAIDLTDKNMEISFPNDARHQSYA
                     EDAFKYLNNLHTLDQQYDLIILDPPAFAKHREALRNALKGYKRLNAKAFEQIKPGGIL
                     FTFSCSQVVSKDQFRLAVFSAAAESKRNVRILHQLSQPADHPINIYHPEGEYLKGLVL
                     WVE"
BASE COUNT          799 a          485 c          581 g          776 t
ORIGIN      
        1 ttgttgggac ctgaggtttc gtatctggaa acttttcatc cggacatggc catcagcgat
       61 acgcctattg ccgcgtttgt ctccgaaaat ctggccgata tttatcagga attaaaagat
      121 tttgctgcaa attaccaatt gggcgatata gatataatga atgatgcgct ggttgcctgt
      181 ttgttggcat ttggcgagca ttggggccag aaattattga acggtttgcg ggcattgcac
      241 gctattcgtt tcagtgatgg atttggtgcc gaagatgata acgaagctga agcttcacat
      301 gggaaaattg accggaattc atttctcaat tttttgcatg atgacgatga ggaattgaca
      361 aacttattga aataatgaag catgtttaag accaagataa ctaaagatga ggtaaattta
      421 ctgcctgtca tttctttcga aggtaaaatc acgttggttg atgacttatc aaaaattcag
      481 ccggctatcg aagaactcag gaaaagtgca attgtaggta ttgataccga gaccaagccg
      541 tcgtttaccc gcggaaccca ccataaagta tcattagttc aaatatctac cttagatcat
      601 tgctttttat tccgactgaa taaaatagat tttccggctg cattagctga atttctggcc
      661 gacgaaaaaa taaaaaaaat aggtctttcg cttcgtgacg atttgaacgg attgaacaaa
      721 caccataaat tcaaaccggc taattgtgtt gatatccaaa ctataatcca aagttacggt
      781 attttggaac ttgggttaca aaaaatatat gctatactct tcggtaaaaa aatatctaaa
      841 tcgcaacgcc tgacaaactg ggaaaacccg gaactgacag aacagcagca acgatatgcc
      901 gctactgatg cttgggccag cctgcaaatc tacctgcagc tgatggccga aaagaaactt
      961 cccaagaaac aactcgataa aatcttattg gaaaatgcac ttgagcaacg cgaactgcgt
     1021 gagcagcaag cagcaagcag agaagctgca accaatacag aggctcagaa ttaatttctg
     1081 ctcgtaactc ctaactttaa actcgtaact aaaaatgatt actatacaac tcaaaccaaa
     1141 gaaagaagaa agtttacaac gttttcaccc atgggtcttt tcaggtgcca ttcagcgcat
     1201 agaaggaaag cctgctgaag gtgatttggt ggaagtgctc gatagtaacc ggaatttttt
     1261 ggctattggc cattatcaga ttgggagtat tgccgttcgg gtggtgtctt tcgaggcgtt
     1321 ggaaataaat gatgattttt gggcaaaaaa aatccggaat gcttatgcca tgcgtaagtc
     1381 gttgggtttg gttgctccaa atctgaataa tacctatcgt ttagtgcatg gtgaaggcga
     1441 ttcgttgccg ggtttgattg tggatgttta cgacgatact gccgtgatgc aggcgcattc
     1501 aattggcatg cacgaaacgc gcgaaattct tgccaaagcc attgttgcca atgttcccga
     1561 ggtaaaaaat gtatattata agtcggaaac aaccttgcca ttcaaagcgg ctattgagcc
     1621 ggaaaatggc tatttgatcg gaagcgagaa cgaaaatctg aaagcactgg agaacgggtt
     1681 gcagtttcat gtggattggc tgcgtggcca gaaaacaggt ttttttgtgg atcagcgtga
     1741 gaaccgttct ttgctggaac gctactctgc cggtaagtca gtgctgaata tgttctgtta
     1801 tacgggaggt ttctcggttt acgctatgcg tggtggtgca aatctggttc attcggtgga
     1861 tagttcggct aaagccattg atttgactga taagaatatg gagattagtt ttccaaacga
     1921 tgcgcgtcat caatcctatg cagaagatgc tttcaaatac ctgaataatc tgcatacgct
     1981 cgaccagcaa tatgacctga ttattctcga ccctccagct tttgcaaagc accgcgaagc
     2041 attgcgcaat gcattgaaag ggtacaaacg gttgaatgca aaggcttttg aacaaattaa
     2101 gccgggtgga atcttattca ctttctcttg ttcgcaggtt gtttccaaag accagttccg
     2161 cttggcggta tttagtgcgg cggctgaaag taaacggaat gttcgtattt tgcaccagct
     2221 ttcgcagccg gccgatcatc cgattaatat ataccatcct gaaggagagt atttgaaagg
     2281 attagtgctt tgggtggaat aggagttttt caagcttgta ataattcccc attttataac
     2341 gaatcaattg ttgctttgag tatttttggt ctttaaatat cactataaat aacacatttg
     2401 acccaaaaat tgaattattt ttgaaattat tgactcaaaa atttgttttt taatattcaa
     2461 tcgttatatt tgcagtctaa acatttctat tcacctctaa aaattaaaac gcctattgct
     2521 gaaaattact ttgaacctca aaattaaaag taatgaaaaa tctgaatcaa ttaactgatg
     2581 acgaattggt aaaattgtat gagattggta ataatcaagc gtttgaaatt ttattgttgc
     2641 g
//
LOCUS       DATDNM010000490         2657 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1557816, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000490 DATDNM010000000
VERSION     DATDNM010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1557816"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1274
                     /locus_tag="VI413_08325"
     CDS             <1..1274
                     /locus_tag="VI413_08325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005826828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914667.1"
                     /translation="LVKSGAISEKHIDESVRNILRLKFRLGLFDNPYVKVQDSTAFYT
                     PDALAKAKQAAIEGAVLLKNENDLLPVTTTIKSVAVIGPLSDAPVDQLGTWVFDAEPY
                     HSVTPLAAIQKIVGSQVKVIAEKGLTYSRDTNPEGIAKAVAAARQADVVLYFAGEEAI
                     LSGEAHCRADISLPGAQSELLAALKKTGKPVVTIIMAGRPLTIEKEVEQSDAVLFAFH
                     GGTMAGPALADLIFGKAVPSGKLPVTFPRMVGQIPLYYAHKMTGRPAENIVRINEIPI
                     GAAQTSLGNTSYHLDAGDKPLFPFGFGLSYSTFKYSPVKISKKVIAGDEKLTVECNIT
                     NTGKYDAAEVAQFYVRDVVASLARPVRELKGFQKINLKTGETKTVKFEIGADKLGFWH
                     QDNTYSAEPGEFQVWISKDSQSGETLSFKLD"
     gene            1306..>2657
                     /locus_tag="VI413_08330"
     CDS             1306..>2657
                     /locus_tag="VI413_08330"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEY6914668.1"
                     /translation="MKRCMIKVQLLIVIFILSTVSGFGQKYTGLTATASSGTASAAVD
                     NNMGTRWESVQGIDPQSITVDLGAEKNVGAIKLYWEGANAKNYSISFSTDGSTFSGDL
                     YFTDKAAGTRTDLIDNLGVTCRYIKMNGTARNLTYGYSIWEFEVYPPVVPVLTSLVVT
                     PANASITLGASQQFTVSGLDQLGNSIALTNSTTWSVNGTGASIDANGLFSATTKGLYT
                     VTATNTSITKTTTIDVIPAYSNLSIGASATASSGTASAAIDNNGGTRWESAQSDPQWI
                     MVDLGAVKKVTDIFIVWEAANSKDYIIQTSSDNLTWTTIISKSGMPNMARTDRIYDLN
                     VLGRYIRLTGTARNLTYGHSIWEFKIYGTTPNLYRSTATGNWNDVASWETSTDNVNWT
                     PAVLIPSANADQINIQRNQAMTMDVNVTTTSLTLQPSAKLTLNAGNTLIANTITLNSD
                     A"
BASE COUNT          792 a          536 c          581 g          748 t
ORIGIN      
        1 agttggtaaa atccggagcc atttccgaaa aacatattga tgaatcggta cgcaatattc
       61 ttcgtctcaa atttcgcttg ggcttattcg ataatccgta tgtgaaagta caagacagca
      121 cagcttttta tactcccgat gcattggcta aagccaaaca ggcggctatc gaaggtgccg
      181 ttttgttgaa aaatgaaaat gacttattac cagtcacaac tactattaaa tcggttgccg
      241 ttattggccc cttgtctgat gcacctgtag atcagcttgg gacgtgggtt tttgatgctg
      301 aaccttatca cagtgtgaca ccgttggctg ctattcaaaa aatcgttggt tcacaagtaa
      361 aagtcattgc cgaaaaagga ttgacttata gccgcgatac aaaccctgaa ggtattgcca
      421 aagcagttgc agcagcgcgt caggctgatg tcgtattgta ttttgccggc gaagaagcta
      481 ttttgtctgg cgaagcacat tgtcgtgccg atataagtct gcccggtgca caaagtgaat
      541 tgcttgccgc tttgaaaaaa accggaaaac cagtagtgac aattatcatg gccggtcggc
      601 cactcaccat tgagaaagag gtggaacaat cggatgctgt actttttgct tttcacggcg
      661 ggacaatggc aggacctgct ttggccgatt tgatttttgg taaggcagtt ccatcgggga
      721 aacttcctgt gactttcccg cgcatggttg gccagattcc tctttactac gctcataaaa
      781 tgacaggtcg tcctgctgag aatattgtcc ggataaatga aatccccatc ggtgcagcac
      841 aaacttcgct tggaaacaca agctatcatt tagatgccgg tgataaaccg ttgtttcctt
      901 ttggttttgg gttgtcgtat tccactttca aatattctcc ggttaaaatt tcgaaaaagg
      961 taattgcagg tgatgaaaaa ctgactgttg aatgcaacat taccaacacc ggaaaatatg
     1021 atgcagccga agttgcacag ttttatgttc gcgacgtagt agcctcgttg gctcgtccgg
     1081 ttcgggaact aaaaggtttt caaaagatta atctgaaaac tggtgaaact aaaaccgtaa
     1141 aatttgaaat tggagccgat aaattaggtt tctggcatca ggataatacc tacagtgcag
     1201 aacccggcga atttcaggtt tggatttcga aagacagcca gagtggggaa acgctctcgt
     1261 ttaaactgga ttaatgaatt agcagaaatg acaaaaacag gtgttatgaa aagatgtatg
     1321 attaaagttc agttactgat tgttattttt attctctcta ctgtttcagg tttcgggcag
     1381 aaatataccg gacttaccgc gacagcttca tcaggaaccg cttcggcagc tgtagataat
     1441 aatatgggca cacggtggga aagtgttcaa ggtatagatc cacagtctat tactgttgat
     1501 ttgggtgcgg aaaaaaacgt aggagcaatt aaactctatt gggagggagc aaacgctaaa
     1561 aactattcta tcagtttttc tactgatggg agcacattct cgggagattt gtattttaca
     1621 gataaggctg caggtacgcg aacggatttg attgacaacc ttggtgtcac atgcaggtat
     1681 ataaaaatga acggaacagc tcgcaacctt acttatggtt attcaatttg ggaattcgaa
     1741 gtgtatccac ctgttgttcc ggtactaacc tcattagttg tcacgccagc caatgcctct
     1801 ataactttag gtgcttcaca acaattcacc gtgagtggtt tagatcaatt aggaaattca
     1861 atagctttga ctaactcaac aacctggagc gttaacggga caggagcttc cattgatgca
     1921 aacggtctgt tttctgctac tactaaagga ttatacacag ttaccgctac aaatacaagc
     1981 attacaaaaa cgactactat tgacgtaatt cctgcataca gcaatttatc cattggtgca
     2041 tctgccactg catcaagtgg cactgcttca gcggctatcg acaataatgg cggaacacgt
     2101 tgggaaagtg cgcaatctga tccacaatgg attatggttg atttgggtgc ggtaaagaaa
     2161 gttacagata tatttatagt atgggaagct gcaaattcaa aagattatat cattcaaact
     2221 tcaagtgata atttgacctg gacaacaatt atttcaaaat caggtatgcc caatatggct
     2281 cggacagata gaatctatga tttaaatgtt ttaggacgtt acattcgcct cacaggaact
     2341 gcccgaaacc tgacttatgg ccattctatt tgggaattta aaatttatgg tacaactcca
     2401 aatttatacc gctcaacagc tacaggaaac tggaatgatg tagcttcgtg ggaaacatcg
     2461 accgataatg taaactggac tccagctgtt ttaatccctt cagcaaatgc cgatcaaata
     2521 aacattcaac gtaatcaggc aatgacaatg gacgttaatg ttactacaac ttcattgact
     2581 ttgcagccgt cggcaaaact gactctgaat gccggaaata ccctcattgc caataccatt
     2641 acccttaaca gcgatgc
//
LOCUS       DATDNM010000491         5385 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_918221, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000491 DATDNM010000000
VERSION     DATDNM010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5385
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_918221"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(229..1350)
                     /locus_tag="VI413_08335"
     CDS             complement(229..1350)
                     /locus_tag="VI413_08335"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 5 protein"
                     /protein_id="HEY6914669.1"
                     /translation="MLFNKVLKFCVVSFILVQWLNPVYAELPTARQVASKMRIGWNLG
                     NTLEAIGGEDAWGGGHTSQRLIDSVKAAGFNTVRLPVAWFCHSDTVNSSIDKNWIARV
                     KEIVDYCIKDDMYVIINMHWDKGWLENRVNKANQEIVNKRQRIYWTQIANYFKNYDEH
                     LLFAGANEPNAHDSIQMSVLLSYHQTFIDAVRATGGNNRSRTLIVQGPSTDVDDTYKL
                     MNTFPKDNIADRLMAEVHYYTPFQFCLLEKDANWGKMFYYWGKDNHSATDPSRNATWG
                     EENELDQKFESMKTKFVDKGIPVIIGEFGAFKRKLSLQSDQALHNASVEYYYRYLVKS
                     AINKGLIPICWDVPGWLYNRNTGAIVDRGIINAIMHGAK"
     gene            complement(1379..2785)
                     /locus_tag="VI413_08340"
     CDS             complement(1379..2785)
                     /locus_tag="VI413_08340"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEY6914670.1"
                     /translation="MKNKFFNKTLTKALFLVLIFCGSLVPSTTNAQLPTARQMAKKMT
                     LGWNLGNMLEAVWMGKTYKATTYQRTIDSVKLAGFNTVRLPVAWFYHSDTVTNVIDPT
                     WLAHVKSMVDLCIKDSMYVMMNTHWDNGWLDDHINVKDSALVNTRQRAHWTQIANYFK
                     DYDEHLMFASANEPPAKNATQMSILLSYHKTFINAVRATGGNNSSRTLIVQGPSTDAD
                     LTYSIMSTMPKDQISNRLMVEVHYYTPSQFCLLNSDATWGRMFYYWGQGNHSTTDTIR
                     NATWGEESDMDKSLNKMKTKFIDNGIPVLIGEYGAFRKNLSSVSPPSDQALHNASILS
                     WYKYFVKSATSKGIITYCWDTGGIFNFSTGQIKDKDVVSSIKQGYNEAIATDIKPAID
                     TKLSIYPNPFQTTFTLNADNLARIKRIEITDLVGKMVESENSLSGFHSFGAALKPGIY
                     IVRVSGDNWSKSIKVIKR"
     gene            complement(2828..4219)
                     /locus_tag="VI413_08345"
     CDS             complement(2828..4219)
                     /locus_tag="VI413_08345"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEY6914671.1"
                     /translation="MMKRISLTFIIAGLLVSSNLFAELPTAKQLASKMKLGVNLGNTL
                     ECPYGETGWGAAYTTQRLVDSIKAAGFNTIRIPCAWFTHSDTVKSVIQDAWLSRVREV
                     VNYCIKDSMYVVLNIHWDSGWLENRVTVKDSAQVNARQKAYWTQIANYFKNYGDHLLF
                     ACANEPNNLENNTGRAVFDSYVNTFIKAVRGTGANNSSRTLIYQGNMDYAGIPKDVIP
                     DRLMFEIHNYPYQFSLQPEDMLNPWCGGCGQMLWVCYYWGKGNHSLTELKRNPGYDEE
                     ADIDKFFSTLKTRFTDKGVPVIIGEYAAWKRGDLVAGADTALHYKSVEYYHYRIVKGA
                     LQIGAIPYRWDVPGGLFDRKTGKVNDWGIINAMKKGANEALSTDVASIVNNKTVQLYP
                     NPFKTTFSLKLNSPEQVKGIFVYDMMGRLVETVGCSNSQSIYSLGNSLKSGVYVVKVN
                     EPDGLNSIKIIKE"
     gene            complement(4361..>5385)
                     /locus_tag="VI413_08350"
     CDS             complement(4361..>5385)
                     /locus_tag="VI413_08350"
                     /inference="COORDINATES: protein motif:HMM:NF012859.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RICIN domain-containing protein"
                     /protein_id="HEY6914672.1"
                     /translation="SVSSTSSAENTVSAYSSVNQNADSLTVILVNRDMNASQTVTVNL
                     SHFNVTNGNYKTLQLSSLPTTETFVSETQNALKTGTVAVASNSLTITVPALSTTAILL
                     VPPTVTYSTLKNVTTGLLADGMGRYTDGSTAGQWGNSGSDAQQWVIETVGSYVKIKNK
                     ASGLYLDGLGSSVSGSIVAQKVSSTSNDQQWQQLASGSNFKFKNRTTGLYIDGMGYTT
                     NGSNLCQYKRSTNNRQVWTVATVAGPLPVKAISSDIQPLENNSNNVSIYPTSFTATFN
                     VKIDKPNDIVNIAVYDMLGKEVESVSSSSISTLMTMGALLKPAFYIVQVNGLNWQKSF
                     KIIKKK"
BASE COUNT         1548 a         1149 c          965 g         1723 t
ORIGIN      
        1 accggaatag actgtggttt attcgactac taatttacca gctctggtaa atcagtagtc
       61 gttttttttt gaagtcagaa ttagtcaaca taatttctct ataagctgga aaaacagggt
      121 gacaataaac acaactaata gattaaaaaa gttgccaccc aattacagta agtactggtt
      181 tcacatcatt agttgcaagg gaatgcttgt ggttgacgcc acattatttc acttagctcc
      241 gtgcataatg gcgtttataa taccccggtc aactatcgca cctgtattcc ggttatacaa
      301 ccatccgggt acatcccagc aaattggaat taatcccttg ttgatcgcag attttacaag
      361 atatctgtaa taatactcaa ccgacgcatt gtgaagggcc tgatctgatt gcaacgaaag
      421 tttacgctta aaggcaccaa attcgccaat aatcaccggg attcctttgt ccacaaactt
      481 ggttttcatg ctttcaaact tttggtccag ttcgttctct tcgccccaag tggcattacg
      541 ggatgggtcg gttgccgaat gattatcctt tccccaatag tagaacattt tgccccaatt
      601 ggcatctttc tcaagcaaac aaaattgaaa cggtgtataa taatgtactt ccgccatcaa
      661 acggtcggca atgttatctt ttgggaaggt attcatcaat ttatatgtat cgtctacatc
      721 tgttgaaggg ccctggacta taagtgtgcg cgaacggttg ttgccacctg ttgctctgac
      781 tgcatcgata aaagtctgat ggtaagatag caaaacggac atttggattg agtcgtgggc
      841 attcggttca ttggcgccgg caaaaagcag atgttcatcg tagtttttga aatagttcgc
      901 aatctgagtc caataaatgc gctgcctttt atttacaatc tcctgattgg ctttattaac
      961 cctattttct aaccatcctt tatcccaatg catattgatt attacataca tatcatcttt
     1021 gatacaataa tctactatct ctttcacacg ggcaatccag tttttatcaa tactactgtt
     1081 gacagtatcg gaatggcaga accaagccac cggaagccga actgtattga atccagcggc
     1141 ttttacagag tcaataagtc gttgagaggt atgaccaccg ccccaggcat cttctccgcc
     1201 tatggcttcg agggtattgc ctaaattcca accaattctc attttggatg ccacttgcct
     1261 ggcagtgggc aactcagcat aaacagggtt caaccattga actaaaataa acgaaacaac
     1321 acaaaacttt aataccttat taaacaacat aactttttac tttcacgaat ttattcattt
     1381 atctttttat cacttttatt gacttcgacc agttgtcgcc cgatacgcga acaatgtata
     1441 ttcctggttt taaagcagct ccgaacgaat gaaaccccga tagagaattc tcactctcga
     1501 ccattttacc aacaagatcg gttatttcga tccgtttgat ccttgccaga ttatcagcat
     1561 tcagggtaaa agttgtttga aacggattgg gatatatgct taattttgta tcaatagcag
     1621 gttttatgtc agttgctatt gcttcattgt acccctgttt aattgaacta acaacatcct
     1681 tatcttttat ctgtcccgta ctaaaattaa atatccctcc ggtatcccag caatacgtaa
     1741 taattccttt gctagttgct gatttgacaa aatacttata ccaggataat atggaagcat
     1801 tgtgtagtgc ctgatcggat ggaggactca cactgcttag gttttttcta aaagcgccat
     1861 attcaccaat aaggacagga attccgttat caataaattt ggttttcatc ttattcagag
     1921 atttgtccat atcactttct tcaccccagg ttgcatttcg gatagtatca gttgttgaat
     1981 gattaccctg cccccaataa taaaacattc tgccccaggt tgcatcgctg ttaagtaaac
     2041 aaaattgtga tggagtgtaa taatgcactt caaccatcaa gcggtttgaa atctggtctt
     2101 taggcatggt actcataata ctatatgtca aatcagcatc tgtcgaaggt ccctgtacaa
     2161 taagggttcg tgaactatta tttccaccgg tagcacgtac ggcattaata aatgttttat
     2221 gatacgataa caaaattgac atttgggtgg cattttttgc aggaggctca ttagcacttg
     2281 caaacattag gtgttcatca tagtctttga agtaattggc tatctgagtc cagtgtgcgc
     2341 gctgacgggt atttaccaaa gcggaatcct taacattaat atgatcatcc aaccaaccgt
     2401 tatcccagtg agtattcatc ataacataca tactgtcttt tatacataag tcaaccatac
     2461 ttttcacatg tgcaagccat gtaggatcaa tcacattggt aacagtgtcg gaatgataga
     2521 accaggcaac cggaagtctg actgtattga aaccggcaag ttttaccgaa tctatagttc
     2581 gttgatacgt agtggctttg taggtctttc ccatccatac agcctcaagc atattgccga
     2641 gattccaacc taaagtcatt tttttagcca tctggcgtgc tgtaggcaac tgggcatttg
     2701 tggtggacgg aactaaagat ccacaaaaaa tcagaactaa aaatagtgct ttagtaagtg
     2761 tcttattgaa gaatttgttt ttcattttaa atttctatct gatatctgtt tttttgcaat
     2821 tttactttta ttctttgata attttaatgg aatttagccc atccggctcg tttactttta
     2881 caacatatac tcctgatttt aaactatttc caagagagta aatactttga gagtttgaac
     2941 aaccaacagt ttcgaccaaa cgtcccatca tatcatacac aaaaatgcct tttacttgct
     3001 ccggggaatt aagtttcagg ctaaacgttg ttttgaaagg atttggatat aattgaaccg
     3061 ttttgttgtt tacaattgac gcaacatctg tcgagagagc ttcatttgct ccttttttca
     3121 tggcatttat tattccccag tcattcactt taccggtttt tctatcaaat aatccaccgg
     3181 gaacatccca acgatacgga attgcaccaa tctgaagtgc accttttact atgcgataat
     3241 gataatattc cactgatttg taatgaagag ccgtatctgc accggcaaca agatctccac
     3301 gtttccaggc cgcatattca cctattatta ccggaacacc cttgtcagta aaccgggttt
     3361 tgagtgtgct aaaaaattta tctatgtcag cctcttcatc atatcccgga tttcgtttca
     3421 attcggttaa tgaatgattt ccttttcccc aataatagca aacccaaagc atttgaccgc
     3481 aaccaccaca ccatggatta agcatatctt caggttgaag tgaaaactga taaggataat
     3541 tatgtatttc aaacattaaa cgatccggaa ttacatcttt aggaattcct gcataatcca
     3601 tatttccctg ataaatcagc gtccgtgagc tgttatttgc ccctgtacca cgcacagctt
     3661 taataaaagt attcacgtaa gaatcaaata cagcccttcc tgtattattt tcgagattat
     3721 taggttcgtt ggcacaggca aaaagcaaat gatcgccata atttttaaaa taattggcaa
     3781 tttgcgtcca gtaagccttt tgtcgtgcat ttacctgagc tgagtcttta accgttacac
     3841 gattttccaa ccaaccgcta tcccaatgga tattcaacac cacatacata ctgtccttga
     3901 tgcaatagtt gaccacttca cgaactcttg ataaccaggc atcctgaatg acacttttta
     3961 cagtatcaga atgtgtaaac catgcacatg ggattctgat tgtattaaaa ccggcagcct
     4021 tgatagaatc cactaatcgc tgggttgtat aagcagctcc ccagcctgtt tcgccatatg
     4081 gacactcgag cgtattaccc agatttacac ccagtttcat tttagatgca agttgtttgg
     4141 cagtaggtaa ctctgcaaac aaatttgaag aaacaagaag tccggcaata ataaatgtaa
     4201 ggctaattcg cttcatcatt cttaagtatt ttttaattct tatatatttt tttgtggtag
     4261 acaggtcttg ggttttaacc acaaagtaaa cactcaaaaa aaagcatctt ttatattaaa
     4321 ctatcaactg attatcgagt gtttactttt ttctgttttt ctattttttc ttaataatct
     4381 tgaacgattt ctgccaattc aaaccattta cctgcacaat ataaaaagca ggtttaagca
     4441 aagctcccat tgtcatcagg gttgaaattg atgacgagct aacactctca acttctttgc
     4501 ccaacatatc atatactgca atattcacaa tatcgtttgg tttatcaatt ttcacattga
     4561 aagttgctgt gaatgaggtt gggtatattg acacgttatt gctattgttc tcaagcggtt
     4621 gaatgtcaga agaaattgct tttaccggta gcggaccagc aacagttgca accgtccaaa
     4681 cttgcctgtt attagtgctt ctcttatact gacataaatt agagccgttt gtcgtataac
     4741 ccataccatc gatgtataat cctgtcgttc tgtttttgaa cttaaaatta cttcccgagg
     4801 cgagctgttg ccattgctga tcattgctgg tgctgctcac tttttgtgca actatcgaac
     4861 cactcacgct gcttcccaga ccatcaagat acaagccact ggctttgttt ttaattttta
     4921 cgtagctgcc aaccgtttcg ataacccatt gctgagcatc actgccactg ttgccccatt
     4981 gaccggctgt cgaaccgtca gtatatctac ccataccatc agccaacaat cctgtcgtaa
     5041 catttttcag cgtagaatat gtaacagtag gaggaacaag tagaatagcc gttgtagaga
     5101 gtgccggaac ggttatcgtt agtgagttgg aagccacggc taccgtgcct gttttcagcg
     5161 cattttgtgt ttcagacaca aaagtctctg ttgttggtaa cgatgacaat tgcaatgttt
     5221 tgtaatttcc attggtcaca ttaaaatggc tcaaattgac ggtaacagtt tgagacgcat
     5281 tcatatcccg gtttacaagt atcactgtta acgagtcagc attctggttt accgaagaat
     5341 aagccgacac cgtattttct gcgctggaag tactggaaac gctga
//
LOCUS       DATDNM010000492         2913 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1345159, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000492 DATDNM010000000
VERSION     DATDNM010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2913
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1345159"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(273..2345)
                     /gene="kdpB"
                     /locus_tag="VI413_08355"
     CDS             complement(273..2345)
                     /gene="kdpB"
                     /locus_tag="VI413_08355"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008777346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HEY6914673.1"
                     /translation="MKRNKNSSFFEKALLIEALKSSFVKLDPRNQLKNPVMFVVFVGA
                     VFSTFMLIKDFSGFNLQIVIWLWFTSLFANFAEAIAEGRGKAQADSLRKLKTSVMARK
                     LTGTKETLVVASELRKGDIVVCEANDIIPIDGEIIEGIATVDESAITGESAPVVRESG
                     GDRSAVTGGTMVLSDKVLIQVTCDPGDSFIDRMIALVEGAKRQKTPNEIALTILLSGL
                     TIIFVLATVTLYPYYSYSVSQSATKVSLTLPILISLLVCLIPTTIGGLLSAIGISGMD
                     RLLSRNVIAKSGRAVEAAGDIDVLLLDKTGTITFGNRMATEIIGASGIDEHELAEVTQ
                     LSSLSDDTPEGRSIVMLVKEKYNLRGRDLSGFHISSVPFTAQTRMSGIDIHDKDGQLL
                     KSIRKGAADSIKTYVEAAGNVYPVEIEQAVYQISNEGSTPLVVTENEKVLGVVRLKDI
                     VKGGIKERFAQLRKMGIKTVMVTGDNPLTAASIAAEAGVDDFIAEAKPEDKLQVIRAE
                     QADGKLVAMIGDGTNDAPALAQANVGVAMNTGTQAAREAGNMVDLDSNPTKLIEIVEI
                     GKQLLMTRGALTTFSIANDVAKYFAIIPAIFAGLYGFGGMNGPLSKLNIMHLQSPESA
                     VLSSIIFNALIIIALIPLALKGISYRPSGATPILRRNILIYGVGGLIVPFVGIKVIDL
                     IISVLHLV"
     gene            complement(2358..>2913)
                     /locus_tag="VI413_08360"
     CDS             complement(2358..>2913)
                     /locus_tag="VI413_08360"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006844132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HEY6914674.1"
                     /translation="YGMLIFVILTVFIAGLMVGRTPEYLGKKIEAYEVKMAIMGVIAS
                     SFIILVFTAIACMTDAGLGSLLSKGPHGFSEMLYAFTSAAANNGSAFAGLNANTDFYN
                     LMIGVGILVGRFGVIIPVLAIAGSLSKKKVIPVSSGTFRTDNLTFVGLLIAVILIVGA
                     LTFFPALSLGPIVEHILMMSGKVF"
BASE COUNT          907 a          695 c          502 g          809 t
ORIGIN      
        1 cattcacaat aatcagactt ccatttgcac gattagcaaa aacagttaga ccaatgactg
       61 ttacaaaaag cggatatatc attccggtca gaacagtcat aaccagaaat atttttattg
      121 atgtaaatat tgttttcatt attctacatt ttcaacataa ttctaaatag gacattgcaa
      181 gaataattta tttgagaaaa catttcaatg tataaaagta caattaattt actaaaaccg
      241 gttgtacaat ttctcaaata attttaataa aatcaaacta agtgtaatac actgataatc
      301 aaatcaatta ctttaattcc aacaaacgga actataagtc cgcccacacc ataaataagt
      361 atattgcggc gtaagatcgg cgttgcaccc gatggccgat acgaaattcc ttttaacgcc
      421 aatggtatta aagcaataat aatcaaggca ttgaaaataa tagaacttag cacggcgctt
      481 tctgggcttt gcaaatgcat gatattcagt ttcgatagtg gtccgttcat tcctccaaag
      541 ccatataagc ccgcgaaaat agccggaata atggcgaaat acttagccac atcgttggca
      601 atactgaacg tggttagtgc gccccgggtc attaatagtt gtttcccaat ttccacaatt
      661 tcaataagtt tagtcggatt actatccaaa tccaccatat taccggcttc gcgcgctgcc
      721 tgcgttccag tattcatagc tacacccacg tttgcctgcg ccaaagccgg cgcgtcgttt
      781 gtgccatcgc caatcatggc aaccaatttt ccatctgcct gttcggcgcg aattacctgc
      841 aatttatctt cgggttttgc ctcagcaata aaatcatcta caccggcttc ggctgcaata
      901 gaagcagctg tcaatggatt atcacctgta accatcaccg tcttaattcc catttttcgc
      961 aattgggcaa aacgttcttt aatgccacct ttcacaatgt ctttcaacct gacaacgcca
     1021 agcacctttt cattttcagt cacaacaagc ggcgtagaac cttcgttaga aatttgataa
     1081 acagcctgtt ctatctccac cggatagaca tttccggctg cttccacata agttttaatt
     1141 gaatcggccg caccttttcg tattgattta agcagttgtc catctttatc atgaatatca
     1201 atgccactca tacgggtttg tgccgtgaac ggaaccgatg agatatgaaa accggataaa
     1261 tcgcgtccgc gcagattata tttttccttt accaacataa caattgaacg gccctcaggc
     1321 gtatcatccg acaacgatga caactgggtt acctcggcca attcatgttc atcaattcca
     1381 ctggcaccaa ttatttcagt agccatacgg tttccgaagg ttatggttcc agttttatcg
     1441 agcagcaata catcaatatc tccggcagct tcaacagcac gaccgctttt agcaatcaca
     1501 ttcctcgaca acaacctgtc cattccacta ataccaattg cactaagtaa tccaccgata
     1561 gttgttggaa ttaaacatac caatagtgaa ataagaattg gcaatgtcag gctgactttt
     1621 gtagccgatt ggctcacact gtatgaataa tatggataaa gcgtaactgt tgccaatacg
     1681 aaaataattg taagtccaga caataaaata gtcagcgcaa tttcattcgg cgttttctgg
     1741 cgttttgctc cttctaccaa agcaatcatg cggtcgataa atgaatcgcc cggatcgcag
     1801 gtaacctgaa tcaaaacctt atcgctcaac accatagttc caccggttac agccgagcgg
     1861 tcaccgccac tttcgcgaac aaccggagcc gattcgcctg taatggcaga ctcatccacc
     1921 gtggcaatac cttcaataat ttcgccatca ataggaataa tatcattggc ttcgcaaact
     1981 acaatgtcac cttttctcaa ttcgctggca acaactaaag tttccttcgt tccagtcagt
     2041 ttgcgagcca ttacgctggt tttcaatttg cggagcgaat cggcctgtgc cttaccgcgt
     2101 ccttcggcaa tggcttcggc aaaattagca aacaacgatg tgaaccacaa ccagataact
     2161 atttgtaaat taaatccgct aaaatctttt atcagcatga acgttgaaaa aacagcacca
     2221 acgaagacca caaacataac cggatttttt agctgattgc gtggatctaa ttttacaaat
     2281 gagcttttaa gtgcctcaat caaaagtgct ttttcaaaaa agcttgaatt tttatttcgt
     2341 ttcataatta tctctattta aaacacctta cctgacatca tcaatatatg ctcaacaata
     2401 ggtcctaatg acaatgccgg gaagaaagtc agtgcaccaa caatcaggat aacagctatc
     2461 aacaatccga caaaagtgag gttgtctgtt cggaaagttc ctgacgaaac aggtattact
     2521 tttttcttcg aaaggctgcc ggcaatggcc aataccggaa taatcactcc aaaacgcccg
     2581 acaagtattc caacgccaat catcagatta taaaagtcag tattggcatt caatccagca
     2641 aaagcgctac cgttgtttgc agctgccgaa gtgaaagcat acaacatttc agaaaatcca
     2701 tgcggccctt tgcttaacaa actgcccagt ccggcatcgg tcatacaagc tattgccgta
     2761 aaaacaagaa tgataaagct cgatgcaata acacccataa tcgccatttt cacttcgtaa
     2821 gcttctattt ttttgcccag atattcgggc gtacgaccga ccatcaaacc tgcaataaaa
     2881 acggtgagaa ttacaaaaat gagcatgccg tat
//
LOCUS       DATDNM010000493         3466 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1345321, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000493 DATDNM010000000
VERSION     DATDNM010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3466
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1345321"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(218..595)
                     /locus_tag="VI413_08365"
     CDS             complement(218..595)
                     /locus_tag="VI413_08365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006283716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HEY6914675.1"
                     /translation="MTENEISFKIRGAIFKIYNALGPGLLESAYEAVLSYELTQMGLN
                     VKTQVPLPLIYNEIKLDVGYRLDLLVEDKVIVELKSVENMTEVHHKQIITYLKLSGKK
                     LGLLVNFNTQDIEHSIFRKVNGL"
     gene            complement(657..2567)
                     /locus_tag="VI413_08370"
     CDS             complement(657..2567)
                     /locus_tag="VI413_08370"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0004359 - glutaminase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HEY6914676.1"
                     /translation="MNNGFVRVAAAIPELRVADCAYNVAGMAYLMRKAEQEKVQVVCF
                     PELSVTAYTCADLFFQQQLLADAEKALDELKLLSFSTTATIIVGMPLRAQNQLFNTAV
                     VLQGGHILGVVPKTHLPNNNEFYEKRWFSPATATDIQSILLCGEEVPFGTNILFSDGK
                     FSFGIELCEDLWVPIPPSSQHAIHGADIIFNLSATNELIGKHQYLRQLIEQQSARCIA
                     GYVYASAGAGESTTDVVYAGNGLIAENGKIIAHSDRFSFEPQLIVSEIDVERLQADRI
                     RNTNYSNDKSATGYRTVKLEDAHFIHFELKRTFGKHPFVPPLENRDASCEEIFSIQVG
                     GLAKRWKHTNAETVVIGISGGLDSTLALLVCVKTADKLGFDRKRIIGITMPGFGTTDR
                     TYTNAVNLMKSLGITMLEISIKDACLQHFKDIAHDPKKHDVTYENTQARERTQILMDI
                     ANKHNGLVIGTGDLSESALGWATYNGDHMSMYAVNSGVPKTLVRYLVDWAAHQLDAQS
                     EEILRDVLDTPVSPELLPADENGDIVQKTEDIVGPYELHDFFLYYLVRFGFSPEKIFF
                     LAKNAFAETYTDEIIEKWLKTFLRRFFAQQFKRSCIPDGPKVGSINLSPRGDWRMPSD
                     AIAFRFPANSAD"
     gene            complement(2680..3120)
                     /locus_tag="VI413_08375"
     CDS             complement(2680..3120)
                     /locus_tag="VI413_08375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005806973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2721 domain-containing protein"
                     /protein_id="HEY6914677.1"
                     /translation="MEQLTLITPTFLFSAISLILLAYTNRFLSYAQLVRTLKDRYMID
                     HSAVTHAQIMNLRKRLYLTKSMQLFGVGSLLLCVATMFLIYVGLHDVSAYVFAFALLL
                     LIISLGLSVWEIQISAKSLEIYLGKMEDKAFSNMEEEQLTPKGE"
     gene            complement(3191..>3466)
                     /locus_tag="VI413_08380"
     CDS             complement(3191..>3466)
                     /locus_tag="VI413_08380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FprA family A-type flavoprotein"
                     /protein_id="HEY6914678.1"
                     /translation="ELYPEVESLLRKIEIRGVKNRVFGCFGSFTWASAAVKRLTAFVE
                     TMKWESAELNVDEKQGLKTVNYDACLELGRQVAILMKNHVDDPEHCV"
BASE COUNT          958 a          728 c          729 g         1051 t
ORIGIN      
        1 atcatccagg cggttattcg ttttacttgt aattttttgg ataacatgtt tgtttagtaa
       61 aacaataact ttgttgagaa ttaatgcgcc aataatgatg gcaaatgaga ttacccaatc
      121 gcgaagggtg tttccgtaaa atgtttgttc aagcataaat atttcccgca gataacgctg
      181 attttcgcag aagatcattg aataatcagc taagttatta taatccgttt acttttctga
      241 aaatagagtg ttctatatct tgtgtattga aattaaccaa taatccgagc ttctttcccg
      301 ataattttag gtaagtgata atttgtttgt gatgaacttc ggtcatgttt tcaacagatt
      361 tgagttcaac tataactttg tcttcaacca gcaagtccaa ccggtatcca acatcgagtt
      421 ttatttcgtt atatattaat ggtaatggaa cctgagtttt gacattgagt cccatttgcg
      481 ttagttcata agacaaaact gcttcatagg ctgattccaa taaaccagga ccaagagcgt
      541 tataaatttt aaaaatagct cctcttattt tgaacgaaat ttcgttttcc gtcataatgt
      601 tagatttttc gtagattctt aattaggtta tagtattcca ttttcttatt tcagcgttaa
      661 tctgcggaat ttgcgggaaa tctgaacgct atagcatcac ttggcatccg ccagtcgcca
      721 cgcggcgaga ggtttatcga gccaactttt ggtccgtcgg ggatgcacga acgtttaaac
      781 tgctgtgcaa agaagcggcg cagaaatgtt ttcagccatt tttcaattat ttcatctgta
      841 tatgtttctg caaaagcatt tttagccagg aaaaagattt tctccgggct aaatccaaag
      901 cgaaccaggt aatacaggaa gaaatcatgc aattcgtatg gcccgacaat gtcttcggtt
      961 ttctggacaa tatcgccatt ctcgtctgcc ggaagcaatt cgggacttac cggtgtgtct
     1021 agtacatcgc gcaggatttc ttcggattga gcatccaatt gatgcgccgc ccaatccaca
     1081 agataacgaa ccagcgtttt aggaactccc gaattgactg catacatcga catgtggtcg
     1141 ccgttatagg ttgcccaacc cagagccgat tccgataagt cgccggttcc aatcaccaat
     1201 ccgttatgtt tgttcgcaat atccatcagg atttgcgtcc gctcgcgggc ttgagtgttt
     1261 tcgtaagtta cgtcgtgttt tttcggatcg tgtgcaatgt ctttgaaatg ttgtagacag
     1321 gcatctttaa tcgaaatctc gagcatggta atacccaggg atttcattag gtttactgca
     1381 tttgtgtagg tgcggtcggt cgttccaaag cccggcatgg tgataccgat aatgcgtttg
     1441 cggtcgaatc caagtttgtc ggccgttttt acacaaacca acaaagccaa tgtagaatcc
     1501 agtcctccgg aaatgccgat aacaaccgtc tccgcattcg tatgtttcca acgtttagcc
     1561 aatccaccta cctgaatgga gaaaatttct tcgcaactgg catcgcggtt ttccaaagga
     1621 ggtacaaacg gatgttttcc gaatgtccgt tttaattcaa aatgaatgaa atgcgcatct
     1681 tccagtttta cagtgcgata tccggtagct gatttgtcgt ttgaatagtt ggtgttcctg
     1741 attctgtctg cttgcaggcg ttctacatca atttcgctca caatgagttg cggttcaaag
     1801 gaaaaacgat ctgaatgtgc aatgattttt ccgttctcgg caatcaatcc gtttccggca
     1861 tataccacat cggtggttga ttcgcctgca ccggctgagg cataaacata cccggcaatg
     1921 catcgtgctg actgttgttc aattagttgc cgcaggtatt ggtgtttgcc aatcaattcg
     1981 ttggtggccg aaaggttgaa aatgatatcg gccccgtgaa tggcatgttg cgaactgggc
     2041 ggaatgggta cccagagatc ttcgcacaat tcaattccga aagaaaattt tccgtcgctg
     2101 aaaaggatat tggtgccaaa gggaacttct tcgccgcaaa gtaaaataga ttgaatatcg
     2161 gttgcagttg ccggcgagaa ccaccgtttt tcgtaaaact cgttgttgtt gggcaaatgc
     2221 gttttaggaa caactcccag gatgtgtccg ccctgaagta caacagctgt attgaaaagc
     2281 tggttttgtg cgcgcagcgg catcccaaca ataatagtgg ctgtggtaga aaagctgagt
     2341 agtttcagtt catctaatgc cttttcggca tcggcaagca gttgttgctg aaaaaacaaa
     2401 tctgcacagg tgtaagccgt gaccgataat tcgggaaagc aaactacctg gactttctcc
     2461 tgttccgctt ttctcatcag ataagccatt ccagctacat tataagcgca atcggctacc
     2521 cgtagttcgg gaatggctgc agccacacgt acaaatccgt tattcatatt gataaagata
     2581 gacccctaac ccctaaaggg gaataaggcg tagttattat tgttcagtac ttggctgttc
     2641 taagttggta attttgactg gaatgcaaaa aaaagcgact tattcccctt taggagtcag
     2701 ttgttcttcc tccatgtttg aaaaagcttt atcttccatt ttacccagat atatttccag
     2761 cgattttgca gaaatctgaa tttcccaaac cgagagtcct aatgaaatga taagcaaaag
     2821 caatgcaaat gcaaaaacat acgctgaaac atcgtgcaat ccaacgtata tcaaaaacat
     2881 ggtggctacg cataaaagca gacttcccac accaaaaagc tgcatgcttt tggtgaggta
     2941 aagtcgtttg cgtaggttca ttatttgcgc atgggtaact gccgagtgat cgatcatata
     3001 ccggtctttc agcgtgcgaa ccaattgggc atacgataaa aaacgattgg tatatgccaa
     3061 caaaatcagc gaaatggccg aaaaaagaaa tgttggcgta atgagggtca gttgttccat
     3121 aataattatt tgttaagtac tttgacgact aacacgcgaa attgttttac ctctttcaac
     3181 ttactgcttc ttaaacgcag tgctctgggt cgtcaacatg atttttcatc agaattgcaa
     3241 cctggcgtcc aagttcaaga catgcatcat aattgacagt ttttaatcct tgtttctcgt
     3301 ctacattcag ttctgcggat tcccatttca tagtttcaac gaatgcagtc aatcgtttta
     3361 cagcagcact agcccacgta aatgagccga agcaaccgaa tacacggttt tttacaccac
     3421 gaatttctat ttttcgtaaa agtgattcta cttccgggta taattc
//
LOCUS       DATDNM010000494         3569 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1558347, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000494 DATDNM010000000
VERSION     DATDNM010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3569
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1558347"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1297
                     /locus_tag="VI413_08385"
     CDS             <1..1297
                     /locus_tag="VI413_08385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002560174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEY6914679.1"
                     /translation="DPLFHIHLNVDYPFNLTGILYFPKIKNNIDMQRNKIQLYCNQVY
                     VTDHVENIVPEYLTLLHGVIDSPDIPLNVSRSYLQSDGNVKKISSHITKKVADRLNEI
                     FKADRTAFEEKWDNLKLFIQYGMLSDEKFYERGEKFALLKNIDGKYFTFEEYKALVGE
                     NQKDKNGEVIYLYANNKDEQYSYIQHAKDKGYDVLIMDGQLDVHVVSQLEQKFEKTRF
                     VRVDSDVIDKIIQKDDAVKVTLTDGQRDALVTVFDSQIPTLEKTNFIVTFEQLSAAAN
                     PVFVTQNEFMRRMKEMSALQGGMMSFYGEMPDSYNLVVNTAHPVIEKLLTEEEAACGN
                     EVAPLATEIAQAETKKAALKENQKGKKEEEIPTTEKAEVEELEKQIQELSDKKKAILK
                     SFADGNKQVRQLIDLALLANNMLKGEALANFVKRSVELM"
     gene            1456..1824
                     /locus_tag="VI413_08390"
     CDS             1456..1824
                     /locus_tag="VI413_08390"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: protein motif:HMM:NF013939.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046417 - chorismate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEY6914680.1"
                     /translation="MHKLFTKPTFIVLKSHKSPSECNNKEEIRHQIDLIDKEIIALFG
                     LRFKYVSEIVKYKNDSESVVAQDRKNHVIKARGEWAEEHGLDKETFEQIYRFLVDHNI
                     GKELEILEKKNRKSNNFSKV"
     gene            1861..2811
                     /locus_tag="VI413_08395"
     CDS             1861..2811
                     /locus_tag="VI413_08395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase catalytic domain-containing protein"
                     /protein_id="HEY6914681.1"
                     /translation="MYKQEIKVMDCTVRDGGLMNKWQFSDDFVRGVYNACVEAGIDYM
                     EIGYLSSEKAFDRSVYGPWKFCHQKDLERIVGKNETNLKLSAMADIGRIELDDIPMAS
                     DSLLDMIRVACYVHQVDKAIALAHHCIDKGYEVCINLMAVSTVNEHELDEALKDIAAS
                     RVKTFYAVDSFGSMYVESIQHLVRKYMVALPGKEIGIHAHNNMQMAMSNTYTAIMEGC
                     TMLDATLMGLGRGAGNCPIEILIAFLKNPKYRLLPLLQVIQDYVHPMQSQIDWGYHIP
                     YLISGALNAHPRKSLEWMDSDRKNDFVTFMKEMHDNEVLE"
     gene            3150..>3569
                     /locus_tag="VI413_08400"
     CDS             3150..>3569
                     /locus_tag="VI413_08400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018964978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6914682.1"
                     /translation="MSEVEKARETASANYGASSIQVLEGLEAVRKRPAMYIGDIGIKG
                     LHHLVYEVVDNSIDEALAGHCDNIQVFINEDNSITVIDNGRGIPVDFHEKEGKSALEV
                     VMTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSTYVR"
BASE COUNT         1211 a          777 c          740 g          841 t
ORIGIN      
        1 agatccgttg ttccacatcc acctcaacgt ggattatccg ttcaacctga ccggtattct
       61 ttacttccca aaaatcaaaa acaacatcga catgcaacgc aacaaaattc aattgtattg
      121 caaccaggtg tatgttaccg accacgtgga gaacatcgtt cccgaatacc tgacattatt
      181 gcatggggtg attgactcac cggacattcc gctcaacgta tcgcgcagtt atctgcaaag
      241 cgatggcaac gtgaaaaaga tttcgagcca tatcaccaaa aaagtggccg accgcctgaa
      301 cgagattttc aaagccgacc gcactgcttt tgaagaaaaa tgggacaacc tgaaactctt
      361 catccaatac ggaatgctta gcgacgagaa attctacgaa cgcggcgaaa aatttgccct
      421 gctaaaaaat attgatggca aatacttcac tttcgaagaa tataaagcac tggttggcga
      481 aaaccaaaaa gacaaaaacg gcgaagtaat ttatctgtat gccaacaata aggacgagca
      541 atatagctac atccagcacg ccaaagacaa aggttacgac gtgctgatta tggacggaca
      601 actggacgtt cacgtagtaa gccaactgga acaaaaattc gaaaaaacac gcttcgttcg
      661 ggtggatagc gacgtgattg acaaaatcat ccagaaagat gacgctgtaa aagtaaccct
      721 tacagatggc caacgcgatg cattggtaac tgttttcgat tcgcaaattc ccacattgga
      781 aaaaaccaat ttcattgtta cgtttgagca actttcagct gcagctaatc ctgtttttgt
      841 tacacaaaac gaatttatgc gccgcatgaa agaaatgtcg gccctgcagg gtggcatgat
      901 gagcttctac ggcgaaatgc ccgacagcta caacctggtg gtgaacacgg ctcacccggt
      961 tatcgaaaaa ctgctgacgg aagaagaagc agcatgcgga aacgaagtag ccccgttggc
     1021 aacagaaatt gcacaagccg aaactaaaaa ggcagccctg aaagaaaatc agaaaggcaa
     1081 aaaagaagaa gaaattccaa ctaccgaaaa agcggaagtt gaagagcttg aaaaacagat
     1141 tcaggaactt agcgacaaga aaaaagcaat cctgaagtct tttgccgacg gtaacaaaca
     1201 agtgcgtcaa ttgattgacc ttgcactgct agccaacaac atgctgaaag gcgaagcact
     1261 ggctaacttc gtaaaacgaa gcgtggagct gatgtaattc acaggcttta tctcaagtat
     1321 aaaaaaacaa ccggcgacat gacttaaaat catatcgccg gttttatttt attctcaatc
     1381 cacatttgaa aaattctttc aaattgaaac ttatttccac tctatatttc aaaattcaaa
     1441 acaaaatccg tatttttgca caaattattt acaaaaccaa catttattgt tttgaaatca
     1501 cacaaatcac cttcagagtg taacaacaag gaggaaatcc gccaccaaat cgatttaatc
     1561 gacaaagaaa tcattgccct tttcggactt cgctttaaat acgtcagtga aattgtaaaa
     1621 tacaaaaacg attcggaaag cgtagttgca caggaccgaa aaaaccacgt gataaaagcc
     1681 cgcggcgaat gggccgaaga acacgggctc gacaaagaaa cattcgaaca aatctaccgc
     1741 tttctggtag accacaacat cggcaaagag ctggaaattt tagagaagaa aaatcgtaaa
     1801 tcaaacaact tttccaaagt ttaattttcc ggaaaagtct atagaacaaa atcaaaacca
     1861 atgtacaaac aagaaattaa agtaatggat tgcaccgttc gcgacggtgg attgatgaac
     1921 aaatggcagt tttcggacga ctttgtccgt ggtgtttaca acgcttgcgt cgaagccggc
     1981 atcgattata tggaaatcgg atacctgagc agcgaaaaag ccttcgaccg cagtgtatac
     2041 ggaccatgga aattctgtca tcaaaaagac ctggagcgca tcgtcggcaa aaatgaaacc
     2101 aacctgaaac tgtcagccat ggccgatatt ggccgaatag aactggacga tatacctatg
     2161 gcatccgata gtttactgga tatgatccgc gtggcttgct atgtgcatca ggtagacaaa
     2221 gccattgcat tggcacacca ttgcatagat aaaggttacg aagtgtgcat caacctgatg
     2281 gccgtgtcaa ccgtaaacga acacgaactg gacgaagcac tgaaagatat tgccgcatcg
     2341 cgtgtaaaaa ctttctacgc agtggatagc ttcggaagca tgtacgtgga atctatccag
     2401 cacttggttc gcaaatacat ggttgcactg ccgggcaaag aaatcggaat ccatgcacac
     2461 aacaacatgc aaatggccat gtcgaacacc tacaccgcca tcatggaagg ttgtaccatg
     2521 ctcgatgcta cgcttatggg acttggacgt ggtgccggca attgcccgat agaaattctg
     2581 attgcattcc tcaaaaaccc caaataccga ctattgccat tgcttcaggt aattcaggat
     2641 tatgtacacc ctatgcaatc acaaatagac tggggttacc acatccctta cctgatttca
     2701 ggagcactta acgcacaccc acgcaaaagt ctggaatgga tggactccga ccgcaaaaac
     2761 gactttgtga cattcatgaa agaaatgcac gacaacgaag ttttggaata gtattttcaa
     2821 aaccagaaaa cgcaggacag ccattcataa tttgagtggc tgttctgtgt ttaaatgcaa
     2881 ataccgccat taaaaaagta atatcccggt attcaaaaca caaattccgg tattcaaaac
     2941 acaaattgtt tttcgtcccg aagtgtaaat ttctcacaaa aaactggaag caagcctctc
     3001 attttaattt cggcaaatcc atttttacat tgcatttatg tcaaaaattt atcgtatatt
     3061 tgtctgtttt tcgaaaaagg ttacttcagg gtaagcaaac tcaaaaaaca atcttcaaac
     3121 aactgtaaca aaataacata aaacaaaaaa tgagcgaagt agaaaaagca agagagactg
     3181 caagcgccaa ttatggggca agtagcattc aagtgctgga aggtttggaa gcagtgcgta
     3241 aacgccctgc catgtatatt ggcgacattg gcataaaagg tctgcaccat ttggtgtatg
     3301 aagttgtcga caactctatc gacgaagcgc tggccggaca ttgcgataac attcaggttt
     3361 ttatcaacga agacaactca attactgtta ttgacaacgg ccgtggtatc ccggtagatt
     3421 tccacgaaaa agaaggtaaa tcggccctgg aagtagttat gaccgtgctt catgccggag
     3481 gtaagttcga caaagacagc tataaagttt ccggaggttt gcacggcgtg ggtgtttcgt
     3541 gtgttaatgc tctttctacc tatgttcgt
//
LOCUS       DATDNM010000495         2200 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1453137, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000495 DATDNM010000000
VERSION     DATDNM010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1453137"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            117..1733
                     /locus_tag="VI413_08405"
     CDS             117..1733
                     /locus_tag="VI413_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HEY6914683.1"
                     /translation="MKNTKELLLAGLILLTINVFSQDPNFHIYLCFGQSNMEGAGVIE
                     AQDNTVSSRFKVLEAVDCSVLGRTVGNWYTATPPLCRCNTGLSPVDYFGRTMVEHLPD
                     SIKIGVIQVAVGGCKIELFDKNNYQTYLSTVTDGWFKDIVNLYGGNPYGRLVDLAKKA
                     QKAGVIKGILLHQGESNNSEADWPVKVKQVYDNLLADLGLAANSIPLLAGEVVNADQG
                     GSCREMNAIIAKLPETISKAYVISSSKCTDGPDNLHFNSEGYRRFGTRYAIRMLNLMG
                     IEAVEPPLPAYPETDNIFLEPECATTIGANWQKFTSSEASNGIYVTSRNNIESKNAAA
                     GTDGTISLPFTVNTTGTFTLYARVNCPTANDDSFWIKMDNGDFSMSNGLSTNGWQWVV
                     INTFELTKGQHTVHITYRENGALLDKICISNFANAPTDLGGVAINLGSGLNDVSFPAA
                     AGYSLSQNVPNPFSNKTGISFEIPNFAFVSLKIYNLLGVEMKELAGKNFSAGKHTVEF
                     NSDNLSAGNYFYTLKTGEFTSTKKMLLAIK"
     gene            1892..>2200
                     /locus_tag="VI413_08410"
     CDS             1892..>2200
                     /locus_tag="VI413_08410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylosidase"
                     /protein_id="HEY6914684.1"
                     /translation="MKKINLMLSLLLVMAIGIEAQSYQKTGLGIKAKINSTDVEIQFY
                     GPATVRVLKSPVGKAFTKESLTVVKKPQATKFTVNQQGDVVSLKSNKLKVDVDIKSGK
                     I"
BASE COUNT          710 a          382 c          460 g          648 t
ORIGIN      
        1 acctgagcct taaaaataaa tagataaata tgaaacgatc atgtcttaca agcaccggag
       61 agtcagaaaa tggtgtcatg cgagtttcat acgacataaa aaacaattat tatcgaatga
      121 aaaacacaaa agaactttta cttgcaggat taatcttact caccatcaat gttttttctc
      181 aagatcccaa ttttcatatt tatttgtgtt tcggacaatc gaacatggag ggtgcgggtg
      241 taattgaagc gcaagacaat acagttagta gtcggtttaa agttctggaa gcagtggact
      301 gttcagtgtt aggacgaaca gtgggaaact ggtatacggc tacgcctcct ttgtgtcgtt
      361 gcaatacagg gctttcacct gttgattatt ttgggcggac catggtagaa catcttcccg
      421 acagcattaa aattggtgtt attcaggtgg cagttggtgg ttgtaaaatt gaacttttcg
      481 ataaaaacaa ttatcagact tacctgtcga ctgttacaga tggctggttt aaagatattg
      541 tcaacttata cggaggcaat ccctatggac gtttagttga tctggctaaa aaggcccaaa
      601 aggcaggcgt gattaaaggt attcttttac atcagggaga gtcgaataat agcgaggcag
      661 attggccggt taaagtaaaa caagtttacg ataacttgtt agccgacctg ggattggccg
      721 ccaattcaat tccgctttta gcgggggaag tggttaatgc cgaccaggga ggaagttgta
      781 gagaaatgaa tgcaataata gctaagctac ccgaaacaat ttctaaagcc tatgtcatat
      841 catcaagtaa atgtaccgac ggtccggata atcttcattt taattcggaa ggttatagac
      901 ggtttggaac acgctacgct atccgaatgc tgaatttaat gggcattgaa gcagtagaac
      961 ctccacttcc ggcctatcct gaaactgata acatatttct ggaacccgaa tgtgccacaa
     1021 ctattggtgc aaactggcaa aaattcacca gcagtgaggc ttcaaacgga atttatgtaa
     1081 cttcgcggaa caacattgaa agtaaaaatg cagcagcagg tactgatggg actatttcgt
     1141 tgccttttac ggttaataca acaggcactt ttaccttgta tgcccgcgtt aattgtccaa
     1201 cagctaatga tgattccttt tggattaaaa tggacaatgg cgatttctct atgtcaaatg
     1261 gactttctac aaatggttgg cagtgggtag ttatcaatac attcgaactt acaaaaggac
     1321 aacatacagt tcatataaca tatcgtgaaa atggggcatt gcttgataaa atatgtattt
     1381 cgaactttgc caatgcgcct acggatttgg gcggagtagc tattaatctc ggatcaggac
     1441 ttaatgatgt cagtttcccg gctgctgccg gttattcttt aagtcagaat gttcctaatc
     1501 catttagtaa taaaacgggt atttcgtttg aaatacctaa ctttgctttt gtttctctta
     1561 agatatataa cctgcttggc gttgaaatga aagaacttgc cggtaaaaat tttagtgcag
     1621 gaaaacatac tgtcgaattt aattcagaca atctgtcagc cggaaactat ttctacacat
     1681 taaaaaccgg tgaatttaca agtacgaaaa aaatgctctt agcaattaaa tagcacaata
     1741 ctctgaattg ctatttgtct gaataatatg ttttacatga gttgtgagag attttaatag
     1801 tgattttaca cctatattaa tatctcaaag aagaacatgt ctgtattttt tcggttttgc
     1861 aaaatagaag tatttaaata aaaatcagtt tatgaaaaaa atcaatttaa tgctgtcgtt
     1921 gctgttggtt atggccattg gcattgaggc acaatcttat caaaaaacag gtttaggcat
     1981 aaaagccaaa atcaattcaa cagatgttga aattcagttc tatggccctg ccacagtgag
     2041 ggtgttgaaa tcgccggttg ggaaagcctt taccaaagaa agcctgacgg tggtaaaaaa
     2101 gcctcaagcc acaaaattca ctgtcaatca gcaaggcgat gtagtttcat tgaaaagcaa
     2161 taaactgaaa gttgatgttg atataaaatc aggtaaaatc
//
LOCUS       DATDNM010000496         4605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1131638, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000496 DATDNM010000000
VERSION     DATDNM010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4605
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1131638"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..273)
                     /locus_tag="VI413_08415"
     CDS             complement(<1..273)
                     /locus_tag="VI413_08415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914685.1"
                     /translation="MTSQEIREIAIESSKVYYDYLDKNEKGIQEVEVFEISYPANRDL
                     ILRLRLSAKLFDTEAIFFKNSKKNKKYNIGDVKIIEYDKDKNILLIK"
     gene            1068..1634
                     /locus_tag="VI413_08420"
     CDS             1068..1634
                     /locus_tag="VI413_08420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914686.1"
                     /translation="MWPEYKTPIMSKITIQLTGVAAELVLGNYMPKDATIFNNWEDFY
                     HYNDLIHESQLLVEHISEIQISHDDEVVFTGQISPAHIRPQKSISPVLLHRALYLRTE
                     CAEQAVYRCEFEEEDFDKNLLSFETQDYDLLFKVGTSFLSKVLYAGRELTAEWVSGKP
                     VGNICLLCRFENGYLVPLYDAVNKIGAE"
     gene            2104..4488
                     /locus_tag="VI413_08425"
     CDS             2104..4488
                     /locus_tag="VI413_08425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6914687.1"
                     /translation="MKFKQVLVLVLVFIPFTLFSQKGIIKGRIFNEKNNQPIEFASVS
                     IEGTTIGSTSDLDGNFIFTGIEPGFKKLVVRSVGYQTTISSEIQVQGNQTTFVDIAVP
                     ENTVQLKEVTVRQNLNLKKIESPISVLSIGVQEIEKSAGANRDVSKVVQALPGVGATD
                     PNRNDLIVRGGGPSENVFYLDGIEIPVINHFATQGSSGGSVGVINPDFVREINFYTGA
                     FPANRGNALSSVMEIKQKDGSKDRVHTKLSVGASDAALTIDGPIGQKSTFIVSARQSY
                     LQFLFSAIGLPFLPTYNDFQLKYKYQIDPKNEISFIGIGAIDDMVLNTGIANPTEAQN
                     YILSYLPTYKQWNYTVGTVYKHFGENHFDTWVLSRNMLRNSNFKYLDNDESKPKTSDY
                     ASDEAENKLRFERNYPDSPVKLLFGAGAKYSHYTNHTERQLFINNAVNSLVYNTEIGL
                     FGYQAFAQASKKYFDDLLKLSLGVSVSGNNYNQNMMNPLNQFSPRLSLSYALSEKVDF
                     NANVGRYALQPAYTTLGYRNSAGELVNQNEKLRYTVSNQAIAGFEYRPMENVRVTAEG
                     FYKQYAYYPVSVVDGLSTASKGTNFGQVGDEEIISTGKGRAYGIELLAKIMEMKKMNL
                     TATYTFFRSEFTDSTGVNYFRSSWDTRHLLNLIASYKLPKNWNVALRWRLVGGAPYSP
                     IDSISYNRAAWNITKQPYTDYTRFNSLSLPMTHQLDIRIDKEFYFKKWVLNLYADVQN
                     VYNHKTQSAPIYTNLDTNGTVIPDINGDTNKQGLRTFETLGGTILPTIGIIINI"
BASE COUNT         1361 a         1048 c          890 g         1306 t
ORIGIN      
        1 cttgataagt agaatattct tgtctttgtc atactcaatg atttttacat cacctatgtt
       61 atatttttta ttcttcttgg agtttttaaa gaagatagct tcagtgtcaa ataactttgc
      121 agaaagtctt aatcttaaaa tgagatcacg attcgcagga taagaaattt caaatacttc
      181 aacttcttgt attcctttct cattcttgtc taaataatca taatagactt ttgagctttc
      241 aattgctatt tctctaattt cttgggatgt catttcgata atatgtcagt tatgtttttt
      301 tcacttgcta ctaataccta aatatcctca ggttacaaac tttattttca attagtagat
      361 tatatccagc cctaatcttt cattcgccct caaagttaat aattcttttc aaatcaacac
      421 atggttacta aaaaaacagg gacgaataat tattcgcccc tgtggttggt tattcagccg
      481 gttgcccgtc cgtttttgga gattgtgtcg ccgggcggtt tataattgcc cgtgccacct
      541 gatactgtcc atatagagta ggatttatcg ttttgtacgg gagtataagc gcatccagcg
      601 tgtaccaaat cagaaatttc cacaacccgt tagataatcc ttcgttaccg aaggattatg
      661 taccaaatta gccaaacatt cgttccaatt tgcataacaa tagacagaac aagacacact
      721 atttaataac atacattcac atatattaag ttataaaact agttttcacc tcagtctttc
      781 ctataccttt cctatagctt agatatacct taggtatacg ttaaacaaca ttgttcacaa
      841 aggttactat atgtgaatat atgcaaacaa acaacaaggt ggtggcccct gaattagcat
      901 gcctccctct gttctctttt ccattcttta gaagtccggg aataagtgtt tttacccgat
      961 tttaaaatat agtttccgat aattgaatca aaggaaattc cttccagctc catgcaatag
     1021 ctttcgcgtt ttactgcctt tgacagttgc attaaaaatg tgtaaatttg tggcctgaat
     1081 ataaaacacc gattatgtca aaaataacca tacaacttac aggcgtggct gccgaactcg
     1141 tactgggcaa ctacatgccc aaggatgcta ccattttcaa taactgggaa gatttttacc
     1201 attacaacga cctgatacat gagtcgcaac tgctggtgga gcatatttcc gaaattcaga
     1261 tcagccatga cgatgaagtg gttttcaccg gacaaatttc acccgcgcat atccgtccgc
     1321 agaaaagcat ttcacccgtg ctgctgcacc gcgccttgta tctgcgcacc gaatgtgccg
     1381 agcaagccgt ttaccgctgc gagttcgaag aggaggattt cgacaagaac ctgctgagtt
     1441 tcgaaacaca ggactacgac ttgcttttca aggtggggac ctcgtttctg agcaaggtgt
     1501 tgtacgctgg ccgcgaactt actgcggaat gggttagtgg aaaaccggta gggaatatct
     1561 gcctgctttg ccgcttcgaa aacggctatc tggtgccctt atacgatgcc gtgaataaaa
     1621 tcggagcaga ataatacaac tccggtttac acattcaatc ttcttcaatc tattattcgg
     1681 gcctctgcat ttgttttttc aatatgatta tacgcaaaac gatctattat aaaggcgata
     1741 tgagtatcaa ttgaaatttt cactccgaat tcgaagattg acaattcaat gatagatttt
     1801 aaaccacaaa ttgcacaaat tttcacgaat acttttgttt atcattcgtg aaaatttgtg
     1861 caattcgtgg ttagaaaaga agtattgaca ggataattca aatcacaaca tttaatctat
     1921 tagttagcat ttgcggataa tcatttaatt caatatctaa attattttct gtcttgaccg
     1981 aacaatttgg tatctttttt tgctatatat agtacgaaaa caaacttaat agtacatatg
     2041 aaacgagttc ccggtctgcc gggacgagtt ccatacgaca acttaaaaaa taattattaa
     2101 cgtatgaaat ttaaacaggt actagtattg gttttagtct tcattccttt cactctgttt
     2161 tctcaaaaag gaattatcaa agggcgtatt tttaatgaga aaaacaacca acccattgag
     2221 tttgcctctg tatccatcga aggcaccacc attggctcca cttccgacct ggacggaaat
     2281 tttatcttta ccggcataga acccgggttc aaaaaactgg tagtccggtc cgttggctat
     2341 caaaccacca tctcctccga aattcaggtg cagggcaatc aaaccacttt tgtggacatt
     2401 gcagtgcccg aaaatacagt gcaactaaag gaagttaccg tgcgccaaaa cctgaacctc
     2461 aaaaagattg aaagtcccat ttcggttttg tccatcggtg ttcaggaaat tgagaaaagc
     2521 gccggtgcca accgcgatgt ttccaaagtg gtgcaggcat tgccaggcgt aggcgctacc
     2581 gaccccaacc gcaacgacct gattgtgcgt ggtggaggtc cttcggagaa tgtgttttac
     2641 ctcgacggca tcgaaatccc ggtcatcaac cactttgcca cgcaaggttc gtccggcggt
     2701 tcggtgggcg ttatcaaccc cgattttgta cgcgaaatca acttctacac cggtgccttc
     2761 cctgccaacc gtggaaatgc attgagttcc gtgatggaaa taaaacaaaa agacggcagc
     2821 aaagaccgcg ttcacaccaa actttcggtg ggtgcgtcgg atgcagcgct taccatcgac
     2881 ggtcccattg gtcagaaatc gacttttatt gtctctgctc gtcagtcgta tctgcaattt
     2941 ttgttttcag ccattggctt gccgtttctg cctacgtaca acgacttcca gttgaaatac
     3001 aaataccaga ttgaccccaa aaacgaaatt tcattcattg gcattggcgc catcgacgat
     3061 atggtgctca acacgggcat tgccaaccct accgaggcgc aaaactatat actttcgtat
     3121 ttgccaacct ataaacaatg gaactacacg gtaggcacgg tttacaaaca ctttggcgag
     3181 aaccatttcg acacgtgggt gctgagccgc aacatgctcc gtaactccaa cttcaaatac
     3241 ctggacaacg acgaatcgaa acccaaaaca tcagactatg cttcggacga agccgaaaac
     3301 aagttgcgct tcgaacgcaa ctatcccgac tctcccgtaa aactcctttt tggcgcgggt
     3361 gcaaagtatt cgcattacac caaccatacc gaacgccaac tgtttataaa caatgcggta
     3421 aatagccttg tgtataatac ggaaatagga ctattcggct atcaggcatt tgcacaagcc
     3481 tcgaaaaagt atttcgatga cttgctcaaa ctctcgttgg gtgtaagtgt cagtggcaat
     3541 aattacaacc aaaatatgat gaatccgctc aaccagttct cgccacgctt gtcgctttct
     3601 tacgccttat cggaaaaagt ggacttcaac gcaaacgttg gccgctacgc cctgcaacct
     3661 gcctacacca cacttggcta ccggaattcg gcaggtgagt tggtgaatca gaacgaaaaa
     3721 ctgcgctaca ccgtttccaa ccaggccata gccggcttcg aatatcgccc tatggaaaat
     3781 gtgcgggtta cagccgaagg attttacaaa caatacgcct attatcctgt ttcggtggtc
     3841 gatggactga gcactgccag caaaggaacc aacttcgggc aagtgggcga tgaagaaatc
     3901 atatctaccg gtaaaggcag ggcttatggg attgagctat tggccaaaat catggaaatg
     3961 aaaaagatga acctgacagc tacctatact tttttccgca gcgagtttac cgattctacc
     4021 ggcgtcaact attttcgttc gtcgtgggac accaggcatt tgttgaattt aatagccagt
     4081 tacaaactgc ccaaaaactg gaacgtagct ctgcgctggc gtttggtggg cggtgcacct
     4141 tattcaccta tcgattccat ttcgtacaac cgcgcagcct ggaatataac caagcagcct
     4201 tatacggact acacacgctt caactcgctg agtctgccaa tgactcatca actggatatc
     4261 cgtattgaca aagagttcta tttcaaaaaa tgggtgctca acctatatgc cgatgttcaa
     4321 aatgtataca atcacaaaac ccagagtgca cctatttata ccaacctgga cacaaatggc
     4381 acagtaattc ctgacattaa cggcgacacc aacaaacagg gattgcggac ttttgaaacc
     4441 cttggcggaa caattctgcc tacaatcggg attattatta atatataaac gactgcatcc
     4501 tgcaaaaagg atttaaaata caaatgtatg agaacaagat tattaatagc agttttactg
     4561 ttaatgactg tagttacctc agccaaaaag aaaaaagaag tattc
//
LOCUS       DATDNM010000497         2158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1453606, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000497 DATDNM010000000
VERSION     DATDNM010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1453606"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2158
                     /locus_tag="VI413_08430"
     CDS             <1..>2158
                     /locus_tag="VI413_08430"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEY6914688.1"
                     /translation="SALVQGCRTNSNGAFILSKIKPGNYTLVISMIGYKDHREQIKMD
                     RKDLILKNIQLEENALALGEVEVKGTAAQMVVKGDTMEYNATAFKTADNAVVEDLLKR
                     LPGVEITTEGKITVNGQEIKKIRVDGKKFFSDDVEMTTKNIPAEMIDKIQVLEQKSDM
                     AQLTGFEDNDTERIINLTTKANRKKGVFGNVTAGGGLDTNYDARYDGNAFVNIMDGNA
                     QTAITGGGNNVNTSRSSRGRNWGGGNNAGITTTQNLGINNNTLINPKLKIGGDASFNH
                     SENNVITQSEKESYLKGLKYNNSDSTAGLNNNYSTNMRLEVEWKPDSLNTFVIQPNIG
                     YNRSFSNSERNYLYLTENDSTSWGNSHNNGDGSSIDGGFNLIYSRKFAKKGRTLTTNF
                     NAGLSQSENESWNYSLKNTLDTTITVDQKTVNSSNRYNFNLRMSFVEPLWNVKNLLET
                     SVSLRNTVSNSEKNQYNKDILGNYSQRDSVYSNVFQNNFYSETLELNYRYTEQNYNLM
                     LGAKAEPSQTYSIRTYNNGETRPYTNEVVNFAPTGRFQYNFAKKKFVRIDYRGQTDQP
                     TISQMQPVKNNSNLMNETVGNPTLNPAFNHNFRMFYSSYNEKTFSSFNTMLMFNATKD
                     ALVSNSIYDATGKQYNQTVNAKDIPYNANGNIMFNTPIIQKRLHFNTNTSAGYSMRYG
                     YSKKGLNTEDINIDNLTVGDLSSTRRYNASEQLSLNY"
BASE COUNT          796 a          421 c          420 g          521 t
ORIGIN      
        1 tctgcattag ttcagggctg tagaaccaat agtaacggag cctttattct gtctaaaata
       61 aaacccggca attacacact ggtaataagc atgattggtt acaaagatca tcgtgaacag
      121 attaaaatgg accgaaaaga ccttattctg aaaaacatcc aactggaaga gaatgcactt
      181 gcccttggag aagtggaagt gaaaggtaca gctgcacaga tggtggtgaa aggtgacaca
      241 atggaatata atgccacagc ctttaaaact gctgataatg ccgtggtcga agatctgctg
      301 aaacgcttgc caggtgttga aataaccacc gaaggaaaaa ttacggttaa tggtcaggaa
      361 ataaaaaaaa tacgggtcga tggaaaaaaa ttcttttccg atgatgttga aatgactacc
      421 aaaaacatac cggctgaaat gattgataaa attcaggtat tggaacaaaa gtcggatatg
      481 gctcagctca ccggcttcga agacaatgat acagaacgca ttattaacct gacaaccaaa
      541 gccaaccgta aaaaaggagt ttttggaaat gtaactgccg gaggtggact tgatacaaat
      601 tatgatgcca gatatgatgg taacgcattt gtaaatatca tggatggtaa tgcacaaact
      661 gcaataaccg gtggtggtaa taatgtgaac accagccgaa gcagcagggg acgtaactgg
      721 ggtggtggaa ataatgcagg aattacgact acacagaatt tgggaatcaa taacaataca
      781 cttattaatc ctaaattgaa aatcggaggt gatgcttcgt tcaatcattc tgaaaacaat
      841 gtaataacac aaagcgaaaa ggaaagttat cttaagggat tgaaatacaa caacagcgat
      901 tctaccgcag gactgaacaa taattactca acaaatatgc gtttggaagt ggaatggaaa
      961 ccggacagcc ttaatacgtt cgttatacaa ccaaacatcg gttataatcg ctcattttca
     1021 aacagcgagc gcaattattt gtacctaacc gaaaacgata gcaccagttg gggaaacagt
     1081 cataataatg gtgacggttc gagtattgat ggcggcttta atttaattta cagccggaag
     1141 tttgccaaaa aagggcggac cctgactact aattttaatg caggactctc gcagagcgaa
     1201 aatgaaagct ggaattactc tttaaaaaac acacttgaca ccacaattac cgtcgaccaa
     1261 aaaacagtta attcatccaa ccgctataat ttcaatttac gaatgtcgtt tgttgagcct
     1321 ttgtggaatg taaagaactt actggaaacc tcggtttcat tacgcaatac agttagtaac
     1381 agcgaaaaaa accagtacaa caaagacatt ttgggaaatt attctcagcg cgacagcgtt
     1441 tacagcaatg ttttccagaa taacttttat agtgaaacac ttgaattgaa ctatcgttat
     1501 accgaacaaa actacaacct aatgctcggc gcaaaagccg aaccatcgca aacttacagt
     1561 atacgtactt acaacaatgg agaaacaaga ccatacacaa atgaagtagt gaactttgct
     1621 cccacaggtc gtttccaata taattttgcc aaaaagaaat ttgtacgtat tgactatcgt
     1681 gggcaaacag accaaccaac gataagccag atgcaaccgg tgaaaaacaa ttcgaacctg
     1741 atgaacgaga cagtgggtaa cccaactcta aatccggcat ttaatcacaa cttcagaatg
     1801 ttttacagct cttacaacga gaaaacattt tcgtcattca ataccatgct tatgtttaat
     1861 gccactaaag atgcactggt atcaaacagt atttacgatg ctaccggcaa gcaatataac
     1921 caaacagtta atgcaaaaga tatcccatat aatgcaaacg gaaacatcat gtttaatacc
     1981 cctattatcc aaaagcgatt gcatttcaac acaaatacat cagcaggata tagtatgcgt
     2041 tacggatatt ctaaaaaagg gcttaataca gaagacatca atattgacaa cctcacagtt
     2101 ggagatttga gcagcacccg ccgatacaat gcaagcgaac aattatcact caactaca
//
LOCUS       DATDNM010000498         3193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_491994, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000498 DATDNM010000000
VERSION     DATDNM010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491994"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..603)
                     /locus_tag="VI413_08435"
     CDS             complement(<1..603)
                     /locus_tag="VI413_08435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005815035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle receptor subunit
                     alpha"
                     /protein_id="HEY6914689.1"
                     /translation="MFESLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVN
                     YKIAKTFTETVKEKALGQNVLTALKPNQLMVKIVHDELTQLMGGASVDINMKGNPAVI
                     LMSGLQGSGKTTFSGKLANLLKTKRSKNPLLVACDVYRPAAIEQLKVLGEQLGVPVYS
                     DLESKNPVAIAEAAIKYAKQHGNDVVIVDTAGRLAIDEAMM"
     gene            1356..1697
                     /locus_tag="VI413_08440"
     CDS             1356..1697
                     /locus_tag="VI413_08440"
                     /inference="COORDINATES: protein motif:HMM:NF019884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HEY6914690.1"
                     /translation="MNFIKNINRVEKLHSLILKEKTGTPKELAESLGISRATLYVLID
                     ELNSLNMQVNYSRKHETFYYEQEVKLTLSFKVETIDNPTELRKINGGNFTFSLPSDFS
                     DGRNANIKLKI"
     gene            1900..>3193
                     /locus_tag="VI413_08445"
     CDS             1900..>3193
                     /locus_tag="VI413_08445"
                     /inference="COORDINATES: protein motif:HMM:NF017043.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914691.1"
                     /translation="MLVRQNNILENNIAVLASKIQINKDEILFLNHNYQHRKSGSEYE
                     TINPHLSNDFNLFGKGSLFQYLNRCNTGVGQDMLAHKLCEPEKDTILILKKQSAINEL
                     CNKNEYVQDFQSYSRLIYEHKRELSILIKWMSEPNENFKKSRNIAIILGSINIIWLLL
                     SACSVLTWTSFSLPIILSQFVIFLYKNKISKYLSRINAVVGTFEKYVQVLKLIEEESF
                     ESEYLKLLQQKLTIQEAKSSVSLNSLFKILNVFEVQTNALVSLLLNSLFLLDIHMCYN
                     LLKWRGKHKNVAGSWFSTIGEIEVLISFASYAFNNIEHVTYPTLSDDLFKIEAQELGH
                     PLLQQNVRINNDFLVAGVPSIQIITGANMAGKSTFLRTLALNLLIGMNGAPVIAKEFF
                     FSPCDILSSIKVQDSLTKNESYFYAELLRLKDIIEHVRN"
BASE COUNT         1012 a          554 c          537 g         1090 t
ORIGIN      
        1 catcatggct tcgtcaatgg ccagacgacc tgcagtatcg acaattacca catcgttgcc
       61 atgttgttta gcatatttga tagctgcttc ggcgatggct acaggatttt tgctttccaa
      121 atccgaatat acaggtaccc caagctgctc accaagtact ttcaactgtt cgatagctgc
      181 cgggcggtac acgtcacagg caaccaaaag aggatttttg ctgcgtttgg ttttcagtaa
      241 gttagccagt ttgcctgaaa aagtagtttt acccgaaccc tgtaaacctg acattagaat
      301 aaccgccgga tttcctttca tattgatatc cacgctggca ccacccatca attgggtaag
      361 ctcgtcgtga acaatcttca ccatcaattg atttggtttc agtgctgtaa gtacgttttg
      421 acccagcgct ttttctttta ccgtctcggt aaaagttttg gctattttgt aatttacgtc
      481 ggcatctaac agggctttgc gcacatcttt gagcgtttcg gccacattga tttcggtaat
      541 tttaccttcc cctttcagaa ttttaaacga ccgttccagt ctttcactaa gagattcaaa
      601 cataagttta tacgtgtttt ttagaatacc cccgaccgca aaaggtatta tattaagttt
      661 tgagtttttt ttgagtgcgc aaaggtacaa aaaaaggctt tattctcaaa cccaaagctg
      721 tattttcagt agtgttatta ttcagtatag ctacatattt taaacaccaa attgttcctc
      781 tgttattacc cattggtttt gagcgcaaca tcttattctt tcaatatgac tcatgtaaca
      841 attgggcgaa tatcccaccg gtctatcgtt cttccccttt cctttccgat aatatctggc
      901 ttgtttaaaa atacaaggat atattcatct ttatatttaa aaatagttaa tgagtttgtg
      961 cggttttctg ccggttaatt gacagacctt ctctcaattt gaattgtttt atgcaatgca
     1021 tattgcttat aatttcttct ttttcgactc tttcagatga aaatatttgt tgatgtccaa
     1081 aatattttga atgtgaaatt tatttgcctg atgactagct gtttgtaaaa tggcttgtcc
     1141 aaaaatattt tagcttaaaa cttggatagt gttattttat gagttaattt agctgagaga
     1201 ttcttacaat attcaagtaa ccggatagat aaaataacga attgaattcg cttaacgttt
     1261 attaatgctt ggtgaataat tatgcataaa aatataatgc ttcataaact gtaaaaatta
     1321 cttttctgac cgatataaaa cccgactaat ggcttatgaa ttttattaaa aacattaacc
     1381 gtgtagaaaa gctacactca cttatcctaa aagagaagac cggaacaccc aaagaacttg
     1441 ccgaaagttt gggaattagc cgggctacct tgtatgtact tattgatgaa cttaactcgc
     1501 tcaatatgca ggtgaattac tcgcgcaagc atgaaacctt ctattacgaa caagaggtga
     1561 agctaacact ctcatttaaa gtggagacta ttgataatcc aactgaatta aggaaaatta
     1621 acggagggaa tttcactttt tctcttccgt ctgatttttc agacggaagg aatgcaaata
     1681 taaaattgaa aatataatat gactaaacaa atttattacg aaaacagaat aaatttactt
     1741 gaagcagaac atgaaattta caaaaaaaag agcctgtact ttttatggat gagattagtt
     1801 tcttttatat gttttgccat attcttaatt ttattcttta caattggtca taatttgttt
     1861 ctgattttat tttcagtgtt gtcattagct ttatttgttg tgctcgttag gcaaaataat
     1921 atacttgaaa acaacatagc agttcttgct tcgaaaattc aaatcaacaa agatgaaatc
     1981 ctttttctga atcataacta tcagcatcgt aaatcaggaa gtgaatacga aacgatcaat
     2041 ccacatttat ctaatgattt taatcttttt ggcaagggat ctttatttca atatttaaat
     2101 cgttgcaata ctggtgttgg acaagatatg ctggctcata aactgtgtga accggaaaag
     2161 gatacaattc tgatattgaa aaagcaatcg gcaattaatg aattatgcaa taaaaatgaa
     2221 tatgttcagg actttcaatc ttatagcagg ctcatatatg agcacaaaag agaattatcc
     2281 attctgataa agtggatgtc tgagcccaat gaaaatttca aaaaaagtag aaatattgcc
     2341 atcatattag gttcaataaa cataatctgg ttattattat ctgcatgcag cgtcctcaca
     2401 tggacttcat tttcattgcc aataatctta tcacagtttg ttattttctt atataaaaat
     2461 aaaatatcaa aatatctttc gagaattaac gcggttgttg gaacttttga aaagtatgtc
     2521 caggtattga agttgattga agaagaatcc tttgagtctg aatatcttaa attacttcaa
     2581 cagaaattga caattcagga agcaaaatcc agtgtttctt taaattcatt atttaaaatc
     2641 ctcaatgtat ttgaagtaca aactaatgcg ctggtctcct tattgttaaa ctcgctattt
     2701 ctcttggata ttcacatgtg ttataatctt cttaaatgga gagggaaaca caagaatgtt
     2761 gccgggagtt ggttttcaac tattggagaa attgaagtgc tgattagttt tgccagctac
     2821 gcattcaata atatcgaaca tgttacatat cctactcttt cagatgattt atttaaaatt
     2881 gaagctcagg aattaggaca tcccttattg caacaaaatg ttcggatcaa taatgatttt
     2941 ttggtggcag gagtaccttc aatacaaatc attacaggag ccaatatggc tggaaagagc
     3001 actttccttc ggacattggc cctaaatctt ttaattggca tgaacggagc tccggttatt
     3061 gcaaaagaat tttttttctc tccttgcgac attctatcaa gtataaaagt tcaggattca
     3121 cttacaaaga atgaatccta tttttatgca gaactcttgc gattaaaaga tatcattgaa
     3181 catgtcagga ata
//
LOCUS       DATDNM010000499         2307 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_64474, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000499 DATDNM010000000
VERSION     DATDNM010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2307
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64474"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(26..865)
                     /gene="nadC"
                     /locus_tag="VI413_08450"
     CDS             complement(26..865)
                     /gene="nadC"
                     /locus_tag="VI413_08450"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HEY6914692.1"
                     /translation="MTNDFEQLISLWFAEDIGDGDHTTLSCIPATALGKSQLIIKEDG
                     VLAGVEVAREVFKAFDPELKMTVFINDGAEVKVGDVAFVVEGKIQSLLQTERLMLNIM
                     QRMSGVATRTREYVKALEGTKTRVLDTRKTTPGLRLLEKEAVKIGGGVNHRIGLYDMI
                     LLKDNHVDFAGGIAQAIQRTKAYLKEKGKDLKIEIEVRNFDELAQVMVEGGVNRIMLD
                     NFTPENTRKAVEIIGGKYETESSGGITFATLKEYAECGVDYISVGALTHSVKSLDMSF
                     KAV"
     gene            complement(858..1247)
                     /locus_tag="VI413_08455"
     CDS             complement(858..1247)
                     /locus_tag="VI413_08455"
                     /inference="COORDINATES: protein motif:HMM:NF027349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4783 domain-containing protein"
                     /protein_id="HEY6914693.1"
                     /translation="MKTIKFFLLSVCLLLAVPAIKAQSSEVSSDIIAALNEGDASQLS
                     GYLNANVELVIDNKNDVFSKQQATGIITDFFRKNRVSSFQLLHKGNKDAASFAIGTLK
                     TSTGNYRVYVLTRKNEIQQLRIEPSND"
     gene            1433..1906
                     /gene="rlmH"
                     /locus_tag="VI413_08460"
     CDS             1433..1906
                     /gene="rlmH"
                     /locus_tag="VI413_08460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005854430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEY6914694.1"
                     /translation="MKIILLTVGKSTNSHLIKLQEEYQNRLKYYIPFEMTVVPELKNT
                     KNLSVNEQQEKEADLILKQLETSDEVVLLDEKGKQFTSVGFSEFISKKMLASHKRMVF
                     VVGGPYGFSERVYQRANGKVSLSAMTFSHQMIRVIFVEQLYRAMTILKGEPYHHE"
     gene            1991..>2307
                     /locus_tag="VI413_08465"
     CDS             1991..>2307
                     /locus_tag="VI413_08465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914695.1"
                     /translation="MKTKKNNRILIILLLISIVAGLVCNYFYEVSPKHAIRAGEFQKQ
                     LKIKEDKAAKTLDDMKEIIVHSSKDSLIDYPFENNDISYYVFENNELIFWSDNNLDIS
                     NISL"
BASE COUNT          736 a          463 c          405 g          703 t
ORIGIN      
        1 actaaaaact atgaatacga attagttaaa ctgctttaaa actcatatcc agacttttca
       61 cagagtgcgt caaagcacca acagaaatat aatccacacc acattcagca tattctttca
      121 acgtagcaaa agtaattcct cctgacgatt cggtttcata ttttccacct ataatttcta
      181 ctgctttacg tgtattttca ggtgtaaaat tatcgagcat aatgcggtta accccacctt
      241 cgaccatcac ctgggccaat tcatcgaagt tgcggacttc aatctcaatc ttcagatctt
      301 tgcctttttc tttcaggtaa gcttttgtac gttgaatagc ttgtgctatt ccacccgcaa
      361 aatctacgtg gttgtctttc agcaaaatca tgtcgtacaa accgatacgg tgatttacac
      421 caccaccaat tttcacagct tctttttcta ataaacgaag ccccggagtg gtttttcggg
      481 tatcgagtac acgggttttg gttccttcca aggcttttac atattcgcgg gtacgggtgg
      541 cgacaccact cattcgctgc ataatgttga gcatcaggcg ttcagtttgt agtagcgatt
      601 gaattttacc ttccactacg aaagcaacat cacccacctt tacttcggct ccatcgttga
      661 taaacacggt cattttaagt tccggatcga aagctttgaa tacttcgcgg gcaacttcaa
      721 caccggccaa aacgccgtct tctttgatta ttaactgaga ttttccgagc gctgtagccg
      781 gaatacatga tagggttgta tggtcgccat caccaatatc ttcggcaaac cacaatgaga
      841 taagttgttc gaaatcgtta gtcatttgag ggttcaattc tgagttgttg aatttcattt
      901 tttcgtgtca gaacatatac acgataattt ccggtagagg ttttcagcgt accaattgca
      961 aaactggcag catctttgtt acctttatgc agtaattgaa agctgcttac acggtttttc
     1021 cggaaaaaat ccgtgataat tcctgtagct tgctgcttgc tgaacacatc gtttttatta
     1081 tcgattacga gttcgacatt ggcattcaaa taccccgaaa gctggctcgc atcaccttca
     1141 ttaagcgcag caataatatc tgaagaaact tcggacgact gtgctttgat tgcaggaact
     1201 gctaataaca ggcagacact gagcaaaaag aatttaattg ttttcataac ttgtatgatt
     1261 ttttgcaaaa acattttttt tagaaataaa ttctcattaa aaaatgccat atttgcaatt
     1321 gaattaataa ttcagctgca aaagtacatt atttaatttg ttgcagccaa ataatttgat
     1381 tgatttttat agtaacaaat aacaagccag aaagtgcaaa ttcactaaac aaatgaaaat
     1441 tatactgcta accgttggaa aatcaactaa ttcccaccta ataaagcttc aggaagaata
     1501 tcaaaaccgc ttgaaatatt atatcccttt tgaaatgaca gttgtgccgg aattaaaaaa
     1561 cactaaaaac ttatctgtca acgaacagca ggaaaaagaa gccgacctca tacttaaaca
     1621 actggaaaca agcgatgaag ttgttttatt agacgagaaa ggaaagcaat ttacatcggt
     1681 tggcttctca gaattcatct caaaaaagat gctggcctca cataaacgca tggtttttgt
     1741 agtaggcggt ccgtatggtt tttctgagcg ggtttaccag cgggccaacg gaaaagtttc
     1801 actatcggct atgacatttt cgcatcaaat gatacgggta atctttgttg aacaacttta
     1861 cagagccatg acaatcctga aaggcgaacc atatcatcat gaatgaagtt tagcttttga
     1921 gaaaaaaata aagccaattg aaattatatc aattcgctga attcgtattt aattcgtgta
     1981 attcgccttt atgaaaacaa agaaaaataa ccgcatatta atcattctgc tactaataag
     2041 cattgtagcg ggtttagtgt gcaattattt ttacgaagta tctcccaaac atgctatccg
     2101 cgcaggtgag tttcagaaac aactgaaaat aaaagaagat aaggctgcaa aaacactgga
     2161 tgacatgaaa gaaatcattg ttcattcatc aaaagattcg ctgatcgatt atccgtttga
     2221 aaataacgat atttcatatt atgtttttga aaataacgaa cttattttct ggtcggacaa
     2281 caacctggat atcagcaaca tttcact
//
LOCUS       DATDNM010000500         5445 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_492366, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000500 DATDNM010000000
VERSION     DATDNM010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5445
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492366"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(127..759)
                     /locus_tag="VI413_08470"
     CDS             complement(127..759)
                     /locus_tag="VI413_08470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914696.1"
                     /translation="MWQIFLGSLLLSLIHALIPHHWIPIIAISKTENWTNKEALFATF
                     ITGLSHMISTIVIGIIVGFVGIKLAESYSSITSIAAPTILLVIGIVYLILDLRAKHHH
                     HHFEMEDVAMKNKRSKTAILTSLSIAMFLTPCVEIEAYYFQAATFGWTGIFIVSAVYL
                     IMTLLFMSGLVYLGLKGVNKLNLSYLEHHAKQITGFVLIALGIVAYFVEF"
     gene            complement(868..1392)
                     /locus_tag="VI413_08475"
     CDS             complement(868..1392)
                     /locus_tag="VI413_08475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914697.1"
                     /translation="MMRVASQLTFCSPDKILRREVVELDEQKTITRLFSLDGNAVESA
                     QTLFYDGILSAEIISVKEQLSTLNKVVSGYNYIDLSLGIPTVIVASEKPLLLDFGTHS
                     PEKVNNILAELTQALSAFSMFEIIAACCYFPAMIVHGAASLEINRKTKLLLWEGSDLV
                     NKRITKQTLIREIS"
     gene            complement(1389..2297)
                     /locus_tag="VI413_08480"
     CDS             complement(1389..2297)
                     /locus_tag="VI413_08480"
                     /inference="COORDINATES: protein motif:HMM:NF025494.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4296 domain-containing protein"
                     /protein_id="HEY6914698.1"
                     /translation="MKRLQNNFWSQIVFITGIILLFAACNARPKGVLNQSDMINVLTD
                     LHKLDGSMTAKGIPYDQADKKNEYYISVLTKYGITQAEFDSSLVWYSKNPKNFDKIYD
                     KVIDKLTDLQNDINKGKYHPVDSVELAKIRYNIWNKRIKYVLTKDSARTHLAFEIPDQ
                     NFMLGDVYILKFLQQIAPEDSSKNKLIRFQINYVNGRVRGVIKKAYNDGLTRRFTLRI
                     SSIHPAKIKSISGELLGSSAYKGKMNVMVDSVSLIRVYNASKQDSLLKVLQSADPAHY
                     PVMALPINNELLQPKQKNIRVLILKK"
     gene            complement(2278..2889)
                     /locus_tag="VI413_08485"
     CDS             complement(2278..2889)
                     /locus_tag="VI413_08485"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007480978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEY6914699.1"
                     /translation="MSIAKKSILLIFLVLLVDQVSKIYIKLNFSLGEHVDVLSWFKIY
                     FIENNGMAFGMELIGKLFLTLFRIIAVVALAWYIKKLIKKQFRTGYILAVSLVLAGAA
                     GNIIDSVLYGVIFSASNYMGPVATLFPDGGGYASLFYGKVVDMLYFPIIKNAAGDTIF
                     FSPIFNIADSAISVAVGIILIFFRKELNDSLETKKESNEEVAK"
     gene            complement(3011..3388)
                     /locus_tag="VI413_08490"
     CDS             complement(3011..3388)
                     /locus_tag="VI413_08490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004584055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA C4-type zinc finger protein"
                     /protein_id="HEY6914700.1"
                     /translation="MTEKTRYTDAELDEFRVLITEKLEKAQREYEELRMGIANLDGND
                     VMDTSPTFKVLEEGAATLSKEEAGRLAQRQMKFIQHLQSALIRIENKTYGVCRETGKL
                     IPKERLRAVPHATLSIEAKNDQK"
     gene            complement(3614..>5445)
                     /locus_tag="VI413_08495"
     CDS             complement(3614..>5445)
                     /locus_tag="VI413_08495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5915 domain-containing protein"
                     /protein_id="HEY6914701.1"
                     /translation="DGNEEICIGSVEELMAEIDKSIAAGFMTENPYKNFKVGEYTAEN
                     YAVKNIDLHRPYVDGIILVSKCKKPMKRELDLIDVWFDSGAMPYAQLHYPFENKEMID
                     NATNFPADFISEGVDQTRGWFFTLHAISTMVRGSVAFKSVISNGLVLDKNGNKMSKRL
                     GNGVDPFSTIEKYGSDPLRWYMMTNASPWDNLKFDSEGIDEVRRKFFGTLYNTYSFFS
                     LYANVDKFTYAEAEIPMEKRPEIDRWIISLLNTLVKDVTEYYETYEPTRAGRAISDFV
                     GENLSNWYVRLNRKRYWGGEYDEDKISAYQTLYTCLETVARLMAPIAPFFADKLFIDL
                     NAVTGKDTTESVHLADFPTFNEALIDSNLEECMQLAQQTSSMILALRRKADKKVRQPL
                     SKAVVPAQDETSYKQMLYIADLIKAEVNVKELEVIPADADMENLVKKIKPNFKTLGKK
                     YGKQMKEIAQVMAGFTKHEITEIERKGSYTLALPTGDVQLELEDVEIITEDMPGWLVA
                     NEGKLTVALDITVTDALLREGIARELVNRIQNIRKSNGYEIVDKILVEIESRDEINEA
                     VKEYANYIASQTLANSVLLVTKLTDATELEFDEYTVKVSVKKV"
BASE COUNT         1518 a         1121 c         1058 g         1748 t
ORIGIN      
        1 atggaaaggg cgttgaccgc ttcaaatcct aatccactgt ttcctccggt tactataact
       61 gttttaccgg ttagatcagg gatgtcactc gtgttccagt ttttagttgc cataatttct
      121 tttatattaa aattcaacaa aataggctac aattcccaat gcgattaaaa caaaaccggt
      181 aatttgtttt gcatgatgct caagataaga cagatttagt ttatttacac cttttagccc
      241 tagataaacc aatccagaca taaataacag cgtcataatt aaatatacag ccgaaacaat
      301 gaaaatacct gtccagccaa atgttgctgc ctgaaaataa taggcttcaa tttcaacaca
      361 tggagtaaga aacatagcaa tactcaatga cgttagaata gcagttttcg atcttttatt
      421 tttcatagcc acatcttcca tttcgaaatg atgatggtga tgttttgcac gcagatcgag
      481 aattaaatat acaataccga taaccagtaa tatagtggga gctgcaatgc ttgtaattga
      541 actgtaactt tcagcaagtt taatacctac aaaacccaca ataatcccaa tgactatggt
      601 acttatcatg tgcgaaaggc cggtaatgaa agtggcaaaa agtgcttctt tatttgtcca
      661 gttttccgtt ttggaaattg caattatcgg aatccagtga tgtggaatta atgcatgaat
      721 caaactcaaa agtaaacttc ctaaaaatat ttgccacatt gtatgtcgtt ttattgttga
      781 atagaatgaa aatggaatta tgtaaaatta atacagactt actaataaca ctgtcagcgg
      841 agttttgttt ttagcggcgc tgatgaatta ggatatttcc ctgattaggg tttgttttgt
      901 aatccgtttg tttactaaat ccgaaccttc ccaaagtagt agttttgttt ttctgttgat
      961 ttccaacgaa gcagctccat ggacgatcat agccgggaaa tagcaacagg ctgcaatgat
     1021 ttcgaacatt gaaaatgctg aaagagcctg tgtaagttca gctaatatat tattgacttt
     1081 ttcaggggaa tgagtcccga aatccagtaa tagcggcttc tccgaagcta ctattactgt
     1141 gggaatcccc agggataaat caatgtaatt atatcctgaa accactttgt tcaacgtgga
     1201 tagctgttct tttacagaaa ttatttctgc cgataaaatc ccgtcgtaaa ataaagtttg
     1261 agctgactca actgcatttc cgtcgaggct gaacaaacgg gttatcgttt tttgttcatc
     1321 taattctact acctctcttc gcagaatttt atcgggcgaa cagaatgtca gttggctcgc
     1381 tactcgcatc atttttttaa aatcagcacc ctgatatttt tttgtttcgg ttgcaataac
     1441 tcgttgttta ttggtaaagc cattaccgga taatgagccg gatcggcaga ttgcagaact
     1501 ttaagcaggc tgtcctgttt cgatgcgtta taaactctta ttagcgaaac actgtccacc
     1561 attacattca tcttgccttt gtaagcagaa cttccaagca attctccaga aatagatttg
     1621 attttagctg gatgaatcga tgatatacgt agcgtaaagc ggcgggttaa accgtcatta
     1681 tatgcctttt tgattacacc acgtactcgg ccgttcacgt aattaatctg gaaacggata
     1741 agcttatttt tactcgaatc ttcgggtgca atctgttgca gaaatttcag gatataaaca
     1801 tctcccaaca tgaaattctg atccggaatt tcaaaagcaa gatgtgtgcg tgcagaatct
     1861 ttcgtcagca catattttat ccgtttattc catatgttgt atctgatttt agccagttca
     1921 acggaatcaa ccggatgata tttgcctttg ttgatatcgt tctgaagatc agttaactta
     1981 tcaataacct tgtcgtaaat tttatcgaag tttttcgggt tttttgaata ccaaaccagc
     2041 gatgagtcga actcagcctg agtaatgcca tattttgtca ggacagaaat ataatattcg
     2101 tttttcttat ctgcctgatc gtatggtatt ccttttgctg tcattgagcc atccagtttg
     2161 tgcaagtcgg tcagcacatt aatcatgtcg ctttgattca aaactccctt aggtctggcg
     2221 ttgcaggccg cgaaaaggag gatgattccc gtaatgaaaa ctatctgact ccaaaaatta
     2281 ttttgcaacc tcttcatttg actctttttt tgtttcgagg ctatcgttca attctttgcg
     2341 gaagaaaatc agaataatcc ccactgctac gctgatagcc gaatcagcga tattgaatat
     2401 cgggctgaaa aatatggtgt cgcctgctgc atttttgatg atagggaagt agagcatatc
     2461 cactaccttt ccataaaaca agctggcata tccacctcca tcgggaaata aggtagccac
     2521 agggcccata tagttgctcg cgctgaaaat aacgccgtag agaaccgaat cgataatgtt
     2581 gccggcagca cctgccaata ccaatgacac tgcaagaata tagccggtgc ggaattgttt
     2641 tttgatgagt tttttaatgt accaggctaa cgccaccaca gcaataatgc gaaagagggt
     2701 gaggaataac tttccgataa gttccatgcc aaaagccata ccgttgttct cgatgaaata
     2761 aatcttaaac caactcaata cgtcgacatg ctcgccaagg ctgaaattca gtttaatata
     2821 tatttttgat acctggtcga ctaataaaac aaggaatata agcaggatgg acttttttgc
     2881 tattgacatt aggatattta tctggttaca atttacgatt tctcagtatg gtaaacgtaa
     2941 attaaattaa acacaaattc ggcaacagac aatagtcccg ttgccgaatt gattcttatt
     3001 ttcagttcga ttatttttgg tcgttctttg cttcgatgct caacgtggca tgaggcactg
     3061 cgcgtaaacg ttctttcgga atcaatttac ctgtttcgcg gcaaactccg taagttttat
     3121 tttcaatacg aatcaaggct gattgtagat gttgaataaa cttcatctga cgttgtgcca
     3181 atcggcctgc ttcttctttt gaaagcgttg cagcaccttc ttccaatact ttaaaagtag
     3241 gagaagtatc cattacgtca tttccatcca aattggcaat tcccatacgc aactcttcgt
     3301 attcgcgttg agctttttca agtttttcgg taatcaacac acgaaactca tccaattcgg
     3361 catcagtgta tcttgttttt tcagtcatag tcgtatttgt taatcggtta ttttagagaa
     3421 atgtctctct aaacaataag ttttcttcag tattttaatt gcctgcgaaa ataggaaatt
     3481 agtttcagtt tgacaattat tttcgtattt aattttggtg aaacacaata taaacacttc
     3541 ggaaatcagc tttgctttaa aaacgaagtt tcgtgacttg agaagtgatc atatttagct
     3601 tccaaaggtt actttatact ttttttactg atacttttac agtgtattca tcaaattcaa
     3661 gttcggtggc atcagttaat ttcgttacta acaacacaga gttggctaat gtttgcgatg
     3721 caatgtaatt tgcatattct tttacggcct cattgatttc atcgcggctc tcaatctcca
     3781 ctaaaatctt atcaacgatt tcataaccat ttgatttgcg gatattctga atacgattta
     3841 ccaactcacg cgcaattcct tcgcgcaata atgcatcggt aacggtgatg tcgagtgcca
     3901 cagttagctt gccttcattg gcaaccaacc agccgggcat atcttcagtg atgatttcta
     3961 catcttcaag ttccagttgc acatcgcctg ttggcaaagc cagtgtatat gaacctttgc
     4021 gctcaatttc ggtaatttca tgtttggtga aacctgccat aacctgcgca atttctttca
     4081 tttgcttgcc atacttcttg cccagggttt tgaagtttgg cttgatcttt tttaccagat
     4141 tttccatatc ggcgtcagca ggaattactt ccagttcttt gacgtttact tcagctttta
     4201 tcaggtcggc aatgtaaagc atttgtttgt atgacgtttc gtcttgcgcc ggaacaacgg
     4261 ctttcgacaa cggttgacgc acttttttgt cggctttacg acgcaacgcc aatatcattg
     4321 acgacgtttg ctgtgccaat tgcatgcatt cttccaggtt gctgtcgatc aacgcttcgt
     4381 tgaatgtcgg gaaatcggct aagtgaaccg attcagttgt gtcttttccg gtaacggcat
     4441 tcaaatcgat gaacaattta tcggcaaaga aaggtgcaat cggagccatc agccgtgcaa
     4501 cggtttctag gcaagtgtaa agcgtttggt atgccgaaat tttatcttcg tcgtactcgc
     4561 caccccaata acgtttgcgg ttgaggcgca cgtaccagtt gctcaggttt tctcccacaa
     4621 agtccgaaat ggcacggccg gcacgggttg gttcgtaagt ttcgtagtat tcagttacgt
     4681 ctttcaccaa cgtgttcagc aatgaaataa tccagcggtc aatttccgga cgtttttcca
     4741 ttggaatttc tgcttcggcg taagtgaatt tatccacgtt ggcatacagc gagaagaaag
     4801 aataggtgtt gtaaagcgtt ccgaagaatt tacggcgcac ttcgtcaatg ccttccgagt
     4861 caaatttcag gttgtcccac ggcgatgcgt tggtcatcat gtaccagcga agcggatcgg
     4921 aaccgtattt ttcaatggtt gagaacggat caacgccatt gcccaatcgt ttagacattt
     4981 tattaccgtt tttgtccagt accaatccgt tggagatgac gcttttgaaa gccaccgaac
     5041 cacgaaccat ggtactgata gcatgcaacg taaagaacca accgcgcgtt tggtctacac
     5101 cttccgaaat gaaatcggca gggaagttag tcgcgttgtc gatcatttct ttgttttcga
     5161 acggataatg caactgtgcg taaggcatgg cgcccgaatc gaaccaaacg tcaatcaggt
     5221 cgagttcgcg tttcattggc ttcttgcatt ttgaaacgag gataatgcca tccacatacg
     5281 gacggtgcaa atctatattt tttactgcat aattttcggc agtatattca cctactttga
     5341 agtttttgta cggattttcg gtcataaatc cggccgcaat agatttatca atttcggcca
     5401 tcagttcttc caccgagcca atgcagattt cttcatttcc atctt
//
LOCUS       DATDNM010000501         3389 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1026413, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000501 DATDNM010000000
VERSION     DATDNM010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3389
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1026413"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(448..1419)
                     /locus_tag="VI413_08500"
     CDS             complement(448..1419)
                     /locus_tag="VI413_08500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914702.1"
                     /translation="MIQTKELCPQSQVQNNNRDNNLTIFVVPSVVPIDWLTPSALFKS
                     TAKCYLKALWQENHYIIGHTIARISSPLLNKPYYIAMCGKVITEKPELLFVKKLGFGA
                     MGATIQGTIESESKIKSGLALYAGRNKVAYMRFKINDRAVQRLMKFVVGYQTKSIAGY
                     APCDLYNGATWPRYEKEGSGCSAFGMALLDVAGILPPESKDWEVSIKMPMDLIGGEYN
                     NYKKISVLDILTRKNWYKDHGTEGIDFITYKTYDPAFVFNWIMNMRTKLDADFQADSE
                     NGIPGLLADRSQVVIPESEPVFMKRKDSDIFVRCYHDRIRSLVPKSE"
     gene            1743..>3389
                     /gene="rpsA"
                     /locus_tag="VI413_08505"
     CDS             1743..>3389
                     /gene="rpsA"
                     /locus_tag="VI413_08505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEY6914703.1"
                     /translation="MEENQNIAEEVIPAAVESTVEETVVEAAPAVEAVEVIEEAPTAK
                     VKVKAEKPVPAGDFDWDAYEKGITLSDSAKEDLEKIYDNTLNAIKDKEVVEGTVILIN
                     KREVVVNVGYKSDGVVPMSEFRYNPDLAVGDKVEVYIESQEDKKGQLILSHKQARATR
                     SWDRVNAALESQEIVKGFVKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVNKT
                     MEFKVIKINHEFKNVVVSHKALIEAELELQKKEIIGKLQKGQVLEGTVKNITSYGVFI
                     DLGGVDGLIHITDLSWGRVSHPEEIVTLDQKLNVVILDFDDEKKRIALGLKQLSAHPW
                     DALSAELKVGDKVKGKVVVMADYGAFVEIAQGVEGLIHVSEMSWSQHLRSAQDFLKVG
                     DEVETVILTLDRDERKMSLGIKQLKSDPWENIEARYAVGSKHTAKVRNFTNFGVFVEI
                     EEGVDGLIHISDLSWTKKVKHPSEFTQIGAEIDVQVLEIDKANRRLSLGHKQLEENPW
                     DVLETMFTVDSVHEGVIVEMLDKGSVISLPYGVEGFATPKH"
BASE COUNT         1141 a          662 c          613 g          973 t
ORIGIN      
        1 tcaatattcg caatgcgtat tcggacgttt tagacaattt cattatatac taccttcgtg
       61 tattatttaa tgcaaagaaa taacaatttt tcttattccc aaaacaaaaa gcaacattta
      121 acaacaaaaa actttttact atccgaataa actattgaca ataaagcact ttaccacaac
      181 cggaagattt tacttccacg ggtgtgccgg caaattctac catgccaaac tccaccgcca
      241 cgctgtaagc acataatcct caaatcagta tcaaaattca tatcggatgc cgtacgctaa
      301 aatatgcata tgtgccactg agttaataga aagtgaaaac cataaacaca ggttgataaa
      361 aaaagccacg agaatgaaat catttccgcg gctttttata ctttagcagt accttttacc
      421 acaaccgatt ctttaaatca ataattttta ttcacttttc ggcaccagac ttcgtattct
      481 atcatggtaa catctcacaa agatatcaga atccttgcgc ttcataaata caggttctga
      541 ttcaggtata acgacttgac tcctgtcagc taacaaacca ggaataccat tttctgaatc
      601 cgcctgaaaa tctgcatcca acttagtgcg catattcata atccagttga aaacaaaagc
      661 cggatcgtat gttttatatg taataaaatc aatcccctct gttccatggt ctttgtacca
      721 attcttccgc gtaaggatat ctaacacact gattttttta tagttattat attcgccacc
      781 aattagatcc atcggcattt taatggaaac ttcccagtct ttggattcag gtggaagtat
      841 ccctgctaca tccagtagtg ccatcccaaa agcagaacaa ccagaacctt ctttttcgta
      901 tcgtggccag gtagccccgt tatacaaatc gcaaggagca taacctgcaa tagatttggt
      961 ttgatatcca actacaaact tcatcaaacg ttgcacagcc cgatcattga ttttaaatcg
     1021 catgtaagca actttattac gccctgcata aagagcaaga ccggatttta ttttagattc
     1081 cgactcaatt gttccttgaa tcgtagcacc cattgcccca aaccccaatt ttttcacaaa
     1141 taacagctct ggtttttctg taattacttt accacacata gctatataat aaggtttatt
     1201 caataagggt gaagaaattc gtgcaattgt gtgccctatt atataatgat tttcctgcca
     1261 aagagccttc aaatagcatt ttgcagtact tttaaacaat gcagatggag ttaaccaatc
     1321 aataggtaca acagaaggaa caacaaaaat tgtcaggtta ttgtctctgt tattattctg
     1381 aacctgtgat tgcgggcaaa gttcttttgt ttgtatcatg ataataaaaa taatttcacg
     1441 caataaaggc ctgtattcta tggtgattat atctacccaa ttaaattatt tctgtaaaat
     1501 tatacacttt tttacattct gcaaagtaaa aaaagcaaaa aagcaaaaaa aaggactttt
     1561 gtaaattttc ttgattctca tcagacaaaa aaaaatcaaa attgctgttt aaatcagtga
     1621 ttttaaacaa cattttgtat tgcaattcca atctatttct gtatctttgc gccctatttt
     1681 gtaaagttat cataatgtct aacctactaa tttattagta attaaaaaaa agaatttcag
     1741 aaatggaaga aaatcaaaac attgcggaag aagtaattcc agccgcagta gaatcaacag
     1801 ttgaagaaac tgtagtagaa gcagctccag ctgtagaagc tgtagaagtt atcgaagaag
     1861 caccaaccgc aaaagtaaaa gtgaaagctg agaaaccagt accagccgga gatttcgatt
     1921 gggatgctta cgaaaaagga atcactttat ctgactcagc taaagaagat ttagaaaaaa
     1981 tttacgacaa cactttgaat gcaatcaaag acaaagaagt tgttgaagga acggttattt
     2041 tgatcaacaa acgtgaggta gttgtaaacg taggctacaa atcggacggc gttgtgccaa
     2101 tgagcgaatt ccgctacaat ccggatttag ctgttggcga caaagttgaa gtttacatcg
     2161 aaagccagga agataaaaaa ggacaattaa tcctttctca taaacaagca cgcgcaaccc
     2221 gctcatggga tcgtgtaaat gctgcattgg aatcacaaga aatcgtaaaa ggtttcgtga
     2281 aatgccgcac caagggtggt atgatcgttg acgtattcgg aatcgaagca ttcttgccag
     2341 gttcacaaat cgacgtgaaa ccaattcgcg actacgatgt atttgtaaac aaaacaatgg
     2401 aattcaaagt tatcaaaatt aaccacgaat tcaaaaacgt tgttgtttca cataaagctc
     2461 ttatcgaagc tgaacttgaa ttacagaaaa aagaaatcat tggtaaactt caaaaaggtc
     2521 aggttcttga aggaaccgtt aaaaacatca cttcttacgg tgtatttatc gaccttggcg
     2581 gcgtagatgg tttgatccac attactgacc tttcatgggg acgtgtttct catcctgaag
     2641 aaatcgttac tttggatcaa aaacttaacg tggttatcct tgacttcgat gatgagaaaa
     2701 aacgtattgc tctcggcttg aaacaacttt ctgctcatcc ttgggatgct ttgagtgctg
     2761 aacttaaagt tggcgacaaa gtaaaaggta aagtagtggt tatggctgac tatggtgcat
     2821 ttgttgaaat cgctcaaggc gttgaaggct tgatccacgt ttcagaaatg agctggtcac
     2881 aacaccttcg ttctgctcag gacttcctga aagtaggaga cgaggtagaa acagtaatcc
     2941 ttactttgga tcgcgacgaa cgcaaaatgt cattgggtat caaacaattg aaatctgatc
     3001 catgggaaaa tattgaagct cgttacgcag taggcagcaa acatactgct aaagtacgta
     3061 acttcacgaa cttcggtgta ttcgtagaaa tcgaagaagg cgttgatggc ttgattcaca
     3121 tttctgacct atcttggacc aagaaagtaa aacacccatc tgagtttact caaatcggtg
     3181 cagaaatcga cgttcaggta ttggaaattg acaaagcaaa ccgtcgtttg agcttaggcc
     3241 acaaacaact ggaagaaaac ccatgggacg tattggaaac aatgtttact gttgacagcg
     3301 tacacgaagg tgtaatcgtt gaaatgctgg acaaaggctc tgtaatctca ttgccttacg
     3361 gtgttgaagg ttttgcaact cctaaacat
//
LOCUS       DATDNM010000502         2456 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1026465, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000502 DATDNM010000000
VERSION     DATDNM010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1026465"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(171..368)
                     /locus_tag="VI413_08510"
     CDS             complement(171..368)
                     /locus_tag="VI413_08510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914704.1"
                     /translation="MNFKSLFNFSLANVSLPYGHIVALGTASDMNFDIDLKDYVQQRC
                     GGVWHGRICRHTRGRKIYRLR"
     gene            456..620
                     /locus_tag="VI413_08515"
     CDS             456..620
                     /locus_tag="VI413_08515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914705.1"
                     /translation="MLTVKHRNGSLKSAVTKYANTRQITFRWQSRFHDYIIRDADEYE
                     PIGMHSAQKW"
     gene            583..810
                     /locus_tag="VI413_08520"
     CDS             583..810
                     /locus_tag="VI413_08520"
                     /inference="COORDINATES: protein motif:HMM:NF020914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RteC domain-containing protein"
                     /protein_id="HEY6914706.1"
                     /translation="MNPLECIQRKNGKTLTRKEVIDYFQQLFGIEIKAPEGKLNRATN
                     RKTNTTPFLDSLKVAFDNYGLKKEEKQRVRK"
     gene            911..1171
                     /locus_tag="VI413_08525"
     CDS             911..1171
                     /locus_tag="VI413_08525"
                     /inference="COORDINATES: protein motif:HMM:NF023583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit M
                     N-terminal domain-containing protein"
                     /protein_id="HEY6914707.1"
                     /translation="MAKQIKEKSIEESLWDSANKLRGTVESSEYKHVVLGLIFLKFAS
                     DKFEERRAELIAEGKEKYLEMVGFYTMCNVFFCPMKPAGAPL"
     gene            1190..1585
                     /locus_tag="VI413_08530"
     CDS             1190..1585
                     /locus_tag="VI413_08530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914708.1"
                     /translation="MTQSHPVSGTTSTPKTYKSSGGEIVESEMGMIPKGWRVGKLDEL
                     VEIIDGDRGTNYPSHQDFSQSGYCLFLNAGNVSKVGFNFSTNNFISKEKDKILRKGKL
                     SRYDMYLQQEGQSEISVIWENLYHLIIFE"
     gene            1603..1893
                     /locus_tag="VI413_08535"
     CDS             1603..1893
                     /locus_tag="VI413_08535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914709.1"
                     /translation="MRAKESVETSIFIYSLLRSEYLRNTIESFMSGSAQPQLPIKDII
                     KMPILIPNPTTINRFGNIGLKFQNNIDNSVIQNLKLNEFINVLLAKLATIEN"
     gene            2119..>2456
                     /locus_tag="VI413_08540"
     CDS             2119..>2456
                     /locus_tag="VI413_08540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914710.1"
                     /translation="MSKLKMILAGLVLLGFGLKAQEVKTIEVKPVGVYAEIDIDGQNR
                     MMKQLYDPQTRNASVDTIFNNITHYNPPVLYLFSQALYVNGEKESALQWYLYAQLNAM
                     YDAARCADTSA"
BASE COUNT          866 a          423 c          491 g          676 t
ORIGIN      
        1 tcaatattcg caatgcgtat tcggacgttt tagacaattt cattatatac taccttcgtg
       61 tattatttaa tgcaaagaaa taacaatttt tcttattccc aaaacaaaaa gcaacattta
      121 acaacaaaaa actttttact acccgagtaa actattgaca ataaagcact ttaccgcaat
      181 cggtatattt tacgtccacg ggtgtgccgg caaatcctac catgccaaac tccaccacaa
      241 cgctgttgca cataatcctt caaatcaata tcaaaattca tatcggatgc agtacccaac
      301 gctacaatat gaccataagg caatgaaaca ttagccagac taaagttgaa aagtgattta
      361 aaattcatta tatttatatt tttaatgttt ttttaaattc caatttgtta atgtaaaata
      421 atcagtattt ttgtaattgt aaaaaaaata tagaaatgct gacggttaaa catcgcaatg
      481 gcagtttaaa atcagccgta accaaatatg ccaatacccg ccagataacg ttcaggtggc
      541 aatcgcgttt ccacgactac attatccgtg atgcagatga atatgaaccc attggaatgc
      601 attcagcgca aaaatggtaa aaccctcacc cgcaaagaag taattgacta tttccaacaa
      661 ctctttggca tagaaataaa agccccggaa gggaaactaa accgggctac caaccgaaaa
      721 accaatacga ccccgttcct ggatagtctg aaagtggctt ttgataatta cggattaaaa
      781 aaggaagaga agcagcgggt aagaaaataa gttaacaaaa acagaggaat tctaaaatta
      841 attgcttaat tttggggcct tgaaatgaag cattgggcaa tcgcccgttg caatagagaa
      901 aaaaagaaaa atggcaaagc agataaaaga gaaaagtata gaagagagtt tgtgggattc
      961 agccaataag ttgcgtggaa cggtagagtc gtcggaatat aaacatgtgg tgctggggtt
     1021 gatatttctg aaatttgcga gcgataagtt tgaggaacgg cgcgcggagc tgatagccga
     1081 aggcaaagaa aaataccttg aaatggtggg gttttacacc atgtgcaatg tatttttctg
     1141 cccgatgaag cccgctggag caccattata gccaaatatt actgacgggg tgactcaaag
     1201 tcaccccgtc agtggcacca ccagcacccc gaaaacctac aaaagcagcg gcggcgaaat
     1261 agtggaaagt gaaatgggta tgattccgaa ggggtggaga gtggggaagt tggatgaact
     1321 tgttgaaatt atcgatggtg acagaggaac aaattatcca agtcatcaag atttttctca
     1381 atcaggctat tgtttgttcc tgaatgctgg taatgtttct aaagttggat ttaatttttc
     1441 aacaaataat tttatttcga aagaaaaaga taaaatacta aggaaaggaa aactatcaag
     1501 gtatgatatg tacttacaac aagagggaca gtcggaaata tcggttattt gggagaattt
     1561 ataccatttg ataatattcg aataaattca ggaatggtta taatgagagc caaagaatca
     1621 gtagaaacat ccatttttat atattcttta ttaagaagcg agtatctgag aaatacaata
     1681 gaaagtttta tgtctggttc agctcaacca caattaccca ttaaggatat aattaaaatg
     1741 cctattctta ttccaaatcc gacaacgatt aataggtttg ggaatattgg tttaaaattt
     1801 caaaataaca ttgataattc tgtaattcaa aatttgaaat tgaatgagtt tattaatgtt
     1861 ctattagcca aactagcaac aatagaaaac taaaaataga aataataatg tcgccgttgt
     1921 acggcttgtg ttttttgaat aattaaataa tctaccatac tgtcgccgct ttgctgctag
     1981 gtgcttagca ccgttattat ggtagtataa gatgaaataa gaatttcaat aggtgcgtag
     2041 catctacatt attgcgttga ttttaaatca ctcgctggcg cggttttgta atcagaaaaa
     2101 attatatact tattgaatat gagcaaatta aaaatgatac ttgccgggct ggttctgctt
     2161 ggcttcggtc tgaaagcaca ggaagtaaaa accatagagg tgaaacctgt gggcgtatat
     2221 gccgaaatag acatagacgg gcaaaaccgg atgatgaaac agttgtatga cccacagacc
     2281 cgcaatgcgt cggtagatac gatattcaat aacataacac actataatcc accggtgttg
     2341 tatctgttta gtcaggcatt gtatgtgaac ggagaaaaag aatcagcatt gcagtggtac
     2401 ctgtatgcac agctcaacgc gatgtatgat gctgcccgct gtgccgacac ctctgc
//
LOCUS       DATDNM010000503         4152 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_385931, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000503 DATDNM010000000
VERSION     DATDNM010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4152
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385931"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..460
                     /locus_tag="VI413_08545"
     CDS             <1..460
                     /locus_tag="VI413_08545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005682732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY6914711.1"
                     /translation="GYTGEGSKTVLPSKAFAKLSARLVPHQRQEKIAKLVSDYLLKIA
                     PENIDIKITYLHGANSYVCPINSAAYLAAEKAYTKTFGKKPLPVRRGGSIGVIPIFEK
                     VLNVKPILMGFGLESDAIHSPNENFSVELFFKGIETIVEFYHEISPKNEA"
     gene            642..896
                     /locus_tag="VI413_08550"
     CDS             642..896
                     /locus_tag="VI413_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013616647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEY6914712.1"
                     /translation="MTKTITFNELRRVKDALPSGSMTKIAAELGLEKETVRNYFGGHD
                     YKDGKSCGVHIEPGPDGGLVMLDDTKILEMALNILETQKG"
     gene            1012..1434
                     /locus_tag="VI413_08555"
     CDS             1012..1434
                     /locus_tag="VI413_08555"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004289792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEY6914713.1"
                     /translation="MEKSIDCLYCQRNELQKSLMIEICDLSVSTLFLFKEQSHPGRCV
                     VAYKDHVKELFELSEADRNAFMADVCNVAEAIQKAFSPAKINYGAYSDKLPHLHFHIV
                     PKYDGEFEFGGIFEMNPQKTYLTADEYTAIIEKIAKEL"
     gene            1474..2805
                     /locus_tag="VI413_08560"
     CDS             1474..2805
                     /locus_tag="VI413_08560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA cytosine-C5-methyltransferase"
                     /protein_id="HEY6914714.1"
                     /translation="MTLPEAFIKRTQDLPDIEFEALINALDSTPPTSIRVNNKMDYQP
                     SEEKVPWCDSGYYLPERPLFTADPLFHAGVYYVQEASSMFLQQAVKQHFPEARTVLDL
                     CAAPGGKSTLLSQALPENSILVSNEIVRSRAYILAENLIKWGNPNVVVTNNEPKDFAT
                     LPGFFDAIVVDAPCSGEGMFRKDPGAIQEWSEYNVKLCAERQREILTSVWNSLKTDGI
                     LIYSTCTYNREENEENVRWICDELGAEVLTINLFDNRDITVSDFGYRFYPHKTKGEGF
                     FLSVLRKHSFVAGTIKNKKDDKKGIKFVTKNDVKALTLLEPANWTIIPENNLVKAYDN
                     NRFADFLIINKQLKCMHSGLLLGEMKGSDFIPAAGIALSKKLDRNSVEIVDVDYETAI
                     LFLRKEAIVFPESSRGYLLVSFKGQALGWVKNMGNRCNNLYPQEWRIRMKL"
     gene            2825..3571
                     /locus_tag="VI413_08565"
     CDS             2825..3571
                     /locus_tag="VI413_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004321259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6914715.1"
                     /translation="MKLLFLGTGTSTGIPQIGCNCKVCTSTETKDKRLRASVIVSDGD
                     TRVLIDCGPDLRQQLIKHEIYHLSGILLTHEHYDHVGGLDDVRPLGEAQLYAEKKVLG
                     VIQRNMPYCFVENKYPGVPLIKLHEINEQPFKVGGLNIQPIRVMHARLPILGYRFGKI
                     AYLTDVKTIEDNSIKQLKDLDILVINALRPNKHISHLSLEEAIEIATKIGAKETYFTH
                     MSHDMGLHHEVDKLLPDTIHLSYDGLELNL"
     gene            3782..>4152
                     /locus_tag="VI413_08570"
     CDS             3782..>4152
                     /locus_tag="VI413_08570"
                     /inference="COORDINATES: protein motif:HMM:NF040069.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6340 family protein"
                     /protein_id="HEY6914716.1"
                     /translation="MKTRKLKFIILAFGTVFLTSCTELLYTSLDVLRPAKVAFALNAN
                     NLLIVNNTVVQPSNLGHRTELLNQKTKNVSIQTDSIALFCLGSLTEELESKNFFSTVQ
                     LLPNSVNTSTNFSIINPLDSTT"
BASE COUNT         1440 a          764 c          782 g         1166 t
ORIGIN      
        1 tggctatacc ggcgaaggct caaaaacggt attgccctca aaagcttttg caaaactgtc
       61 tgcacgtctg gtcccgcacc aacgccagga aaaaatcgcc aaactggttt ctgattattt
      121 gctaaaaatt gctcctgaaa acattgacat caaaattact tatttacacg gggctaatag
      181 ctatgtatgc cctatcaact cagccgcata tttagctgca gaaaaagctt atacaaaaac
      241 atttgggaag aaacctttgc ctgtacggcg agggggaagt atcggggtca ttcctatttt
      301 cgagaaagta ttgaatgtga agcccatatt aatgggtttt ggacttgagt ccgatgcaat
      361 ccattcacca aacgaaaatt tttcggtgga attatttttc aaaggaattg aaactatcgt
      421 agaattttat catgaaattt cgcctaaaaa cgaagcttaa aactacacat tcccaatccg
      481 tcacaaaatt ctatatatca accacttgtc aaagccacaa ctctattttt atttttttac
      541 gaaaaattca ttgaaaatta ttttgctata taaaaagaaa atactaagtt tattgcactt
      601 ttagaaatca cgagttacaa acaattctaa tacttaatgt catgacgaaa acgataacat
      661 tcaacgagct acgtagagta aaggatgcgc ttccaagcgg tagtatgacc aagatagcag
      721 ctgaacttgg tctggaaaaa gaaacagtgc gcaattattt tggtgggcac gactacaaag
      781 atggtaaaag ttgtggagta catatcgaac cgggacctga tggcggctta gttatgttag
      841 atgacactaa aatactggaa atggccctaa acattttaga gactcaaaaa ggttaatatt
      901 cacataagtt attcagaaag cagtgacatt ctatttcact gctttctttt tttgataaac
      961 aggaactctc cgaataaatt tataacacaa taattatttt caccaaaaaa aatggaaaaa
     1021 tctatcgatt gtctgtattg ccaacgcaat gaattgcaaa aaagtttaat gatcgaaatc
     1081 tgtgatctta gcgtttcaac actctttctt tttaaagaac aaagtcatcc tggtcgctgt
     1141 gttgtagcgt ataaagacca cgtaaaggaa cttttcgaac tatcagaagc cgaccgaaat
     1201 gcattcatgg cagatgtttg taatgtggcg gaagcaattc aaaaagcctt ttcgccagca
     1261 aaaataaatt acggtgccta ttccgacaaa ttacctcatc ttcattttca catagtacca
     1321 aaatatgacg gagagttcga atttggtggt atttttgaga tgaaccctca aaaaacatat
     1381 cttactgccg atgagtatac tgcaattatt gagaaaattg caaaagaatt ataatataca
     1441 gccgattatt tctaaagtaa gtaattttcc ccaatgactt tacctgaagc atttattaaa
     1501 cgaacacagg atttgcctga tattgaattt gaggcgctca taaacgcgct agacagtact
     1561 ccgccaacca gtattcgggt aaataacaaa atggattacc aaccttcgga agaaaaagtt
     1621 ccctggtgcg attcgggcta ttatctgccc gaacgcccac tttttactgc cgatccactt
     1681 tttcatgcag gtgtttacta tgtacaggaa gccagttcca tgtttttgca acaagctgta
     1741 aaacaacact ttcccgaagc aagaaccgta ttggatttat gtgctgcacc aggcggtaaa
     1801 tcaacacttc tttcacaagc attgccggaa aacagcatat tggtaagcaa tgaaattgta
     1861 cgctcacgag catacattct ggcagagaac ctgattaaat ggggaaatcc taacgtagta
     1921 gtaacaaaca acgaaccgaa agattttgca actcttccag gatttttcga tgccatagta
     1981 gtagatgcac catgttcggg cgaaggaatg tttcgtaaag atccgggcgc aatacaggaa
     2041 tggtcggaat acaatgtcaa attgtgtgct gaacgccaac gtgaaattct cacatcagta
     2101 tggaattcat taaaaacgga cggtatcctt atttacagca cctgtactta caacagagaa
     2161 gaaaatgaag aaaacgtccg ttggatttgc gatgagcttg gagctgaagt actgactata
     2221 aacctttttg ataacagaga cattactgta agcgattttg gatacaggtt ttatccacac
     2281 aaaacaaaag gcgaaggctt cttcttatct gtgcttagga aacattcttt tgtggccgga
     2341 acgataaaaa acaaaaaaga cgataaaaaa ggcataaaat ttgtaacaaa aaatgacgtt
     2401 aaagcgttaa cattgctaga acctgctaac tggacaataa ttccggaaaa caatcttgta
     2461 aaagcttatg ataataatcg gtttgcagac tttttaatca tcaacaagca attaaaatgc
     2521 atgcattcag gattattgct gggcgaaatg aaaggatcgg attttattcc ggctgcagga
     2581 atagcattat caaagaaatt agatagaaac tcggttgaaa tagttgatgt ggattacgaa
     2641 actgccatct tgtttctaag aaaagaagcc attgtttttc cggaatcaag tcggggttat
     2701 ttacttgttt ctttcaaagg gcaagcattg gggtgggtca aaaatatggg caacagatgc
     2761 aataatctgt atcctcagga atggcgaatc agaatgaaat tataattttc gaagaagact
     2821 gagtatgaaa cttctatttc taggaacagg aacatcaaca ggaataccgc aaattggttg
     2881 taattgtaaa gtatgcactt caaccgaaac aaaagataaa cgattgcgag ccagcgttat
     2941 agtttcagat ggtgatacac gagttttgat tgattgcggg ccggatttga gacaacaact
     3001 tattaaacat gagatttatc atctttccgg aattttgttg acccacgaac attacgatca
     3061 tgtgggaggt ttggatgacg tgagaccttt aggggaagca caattatacg cagagaaaaa
     3121 agtgctgggc gtgatacaac gaaatatgcc ttattgtttt gttgagaaca aatatcctgg
     3181 tgttccactg attaagcttc acgagattaa tgaacaaccg ttcaaagttg gaggattaaa
     3241 catacagcca atcagagtaa tgcacgcacg cttgccaatt ttaggataca gatttggcaa
     3301 aattgcttac ctgactgatg taaaaacgat tgaagataat tcaataaagc aattaaaaga
     3361 cctcgacata ttggtaataa atgcattaag gccaaataaa cacatttcgc atctatcgct
     3421 ggaagaagca attgagattg caacaaaaat tggagctaag gaaacatatt tcacacacat
     3481 gagccacgat atgggattgc accatgaagt ggacaaactt ttacctgata ccatccactt
     3541 atcatacgat ggattggagt tgaatttata aaacactcat ttttcagaca gagttaacca
     3601 taatagtatc tgaaacgagc atgacactaa agacattgac aatttatcat gcgagttcca
     3661 tatgacctaa aaaaataatt attatcatcg tacgaaacga gcatgaatac gggtattcac
     3721 caaatggtat gaaaatctga catgcgaatt ccatgcgaca actaaaaaca attatttacg
     3781 catgaaaaca cgaaaactaa aattcattat tctggctttt ggaactgttt tccttacatc
     3841 ttgcacagaa ttattatata cttcgctgga cgttctgcgt ccggcaaaag tggcatttgc
     3901 attaaatgca aataatctgc ttattgtcaa taatacggtc gttcaaccaa gcaacttagg
     3961 tcatcgcaca gaactcttaa atcaaaaaac aaaaaatgta tctattcaga cagatagcat
     4021 tgcattgttt tgcctgggct ctttgacaga agaattggaa agcaaaaact ttttctctac
     4081 ggtacaatta cttccaaact cagtaaatac aagtaccaat ttctctatta ttaatccact
     4141 ggattctacg ac
//
LOCUS       DATDNM010000504         2812 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1026797, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000504 DATDNM010000000
VERSION     DATDNM010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2812
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1026797"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..778
                     /locus_tag="VI413_08575"
     CDS             <1..778
                     /locus_tag="VI413_08575"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY6914717.1"
                     /translation="HVFIVVYLVLFQLVAFASKPFRFALFTDTHISTTNPIPTEDLRN
                     AITDVNSLQNIDFVLVDGDVSNSGDTTSLIEAKRLLQTLKIPFYIVAGNHDFHWNTGV
                     GSDNFIHVFGADKFVFTHKKVVFAGFTTVPLNNEAKATIQQADIDWIKKALKKTGKNK
                     TTFIVTHYPLLTGDVENWKDLTDVLHKFNVKAILNGHYHRNVLLNYDGIPGVVNRSTQ
                     RAKNPVGGYSIYTVSDSLTVSEKRIGEAEDIWLKLPLNSK"
     gene            806..1504
                     /locus_tag="VI413_08580"
     CDS             806..1504
                     /locus_tag="VI413_08580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEY6914718.1"
                     /translation="MNNFLEISKQEEIAETKRFFVRVYGWMSLALIITGLTAFKTATS
                     PEIIEFIFGQQFVFYGLLILELVLVGYLAGAISKMSAVTATIVFSLYSILNGLTLASI
                     FFVFTSESIANVFFIAAGTFAATSAYGFFTKKDLTKIGNILVMALIGLIIASVVNIFL
                     KSEMLYWISSYAGVLIFVGLIAYDTQKLKTLNVIGNEGTDEDKKEAIIGALTLYLDFI
                     NLFLFLLRIFGRRK"
     gene            1581..>2812
                     /locus_tag="VI413_08585"
     CDS             1581..>2812
                     /locus_tag="VI413_08585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEY6914719.1"
                     /translation="MKLNKIAQIVSANDENIPAAEINWLLTDSRSLSFPAESLFFAIH
                     TARNNGHNYIAELYRQNLRYFVVSEMQPEFEKLTDAVFMQVSDGLKALQTLAAAHRSS
                     FHVPVIGITGSNGKTVVKEWLYQLLHKDYSITRSPRSYNSQIGVPLSVWAMNENTQLG
                     IFEAGISEMHEMEHLQPIIQPTIGIFTNLGEAHQENFTGLKQKCEEKLILFKNAETLI
                     YCSDNKLVEISIAQSDFKGKLFSWGKSDKAVVQILQIEKKVSNTNIKFKYSGKESAVS
                     IPFTDDASIENALQCVVVMLHLGIKQDEIARRILQLEAVAMRLEVKEGVRDCLIINDS
                     YNSDLNSLSIALDFLNQQATAKNLSKTLILSDILQSGQTSDDLYKTVSGLVQNKNVQR
                     VIGIGTEISKQADKFEIA"
BASE COUNT          857 a          491 c          583 g          881 t
ORIGIN      
        1 acatgtattt atagttgtct atctggtttt attccaatta gttgcctttg cttcgaagcc
       61 atttcgattt gcactgttta cagacacaca tatttcaact accaatccga ttcctaccga
      121 agacttacgc aatgcaatca ctgatgttaa ctcacttcag aatatcgact ttgtacttgt
      181 agatggtgat gtgtccaatt caggcgatac aacttccttg atagaggcaa agcgcttact
      241 ccaaacgttg aaaatacctt tttacatcgt tgcggggaat cacgatttcc actggaatac
      301 gggtgtggga tccgataact ttatacatgt ttttggtgct gacaaatttg tatttacgca
      361 caaaaaagtt gtttttgcag gttttacaac tgttccatta aataacgagg cgaaggcaac
      421 tattcaacaa gctgatattg actggataaa aaaggcctta aagaaaaccg gtaaaaataa
      481 gacgactttt attgtaaccc attacccctt gctcacaggt gatgtggaaa actggaaaga
      541 tctgactgat gtgctgcata agtttaatgt aaaagctatt ctgaatggac attatcaccg
      601 gaatgtactg ctgaactacg acggaattcc gggagttgta aaccgttcga cacaacgggc
      661 gaaaaatcct gttggcggct attcaattta cactgtttcc gattcgttga cagtttcgga
      721 aaaacgaatt ggtgaagcgg aagatatttg gctgaaatta cctttaaact caaaataata
      781 agataacata ttaaaaaaca gaattatgaa taactttctt gaaatttcaa agcaggaaga
      841 aattgcagaa accaagcgtt tctttgtacg tgtttatggc tggatgtctt tagctttaat
      901 cattacaggt ttaacggctt tcaaaacagc tacttcgccg gaaattattg aatttatttt
      961 tggtcaacaa tttgtgtttt atggattgct gatattggaa ttggtacttg ttggctattt
     1021 ggctggtgct attagcaaaa tgtcggcagt aacggctact attgtttttt cactttattc
     1081 tatcctgaat ggactgacat tggcaagtat tttctttgta ttcacatctg aatcaattgc
     1141 aaatgtattt tttattgcag caggaacatt tgctgccaca agtgcttatg gtttttttac
     1201 gaagaaagac ctgacaaaaa tcggaaatat acttgtcatg gctttgatcg gattgattat
     1261 tgcatcagta gtaaatatat tcctcaaaag tgaaatgcta tattggattt catcgtatgc
     1321 cggagtgttg atttttgttg ggttgattgc ttatgatacg cagaaactca aaacactgaa
     1381 tgtgattggg aatgaaggaa ctgacgaaga caaaaaagaa gctataatcg gtgcgttgac
     1441 attgtatctt gactttatca acttgttcct gtttttgtta cgtatttttg gacgaagaaa
     1501 ataatattat tagtaagtag tttatagttg gtagtttata ctgattttct tgctgcctac
     1561 ctcttacctc tgtttttaca atgaaactaa ataaaattgc tcaaatcgtc agtgcaaatg
     1621 acgaaaatat tccggctgca gaaataaact ggctgttaac agacagccgt tcgttgtcgt
     1681 ttccggctga aagtttgttt tttgccattc acactgcccg aaataatggg cataactata
     1741 ttgctgaact ttaccggcaa aatctccgct attttgtggt tagcgaaatg caacctgaat
     1801 ttgaaaaact tacagatgct gtatttatgc aggtgagtga tggattaaag gccttgcaaa
     1861 cactggcagc tgcacaccgt agttcgtttc atgttcctgt aattggtatt acaggcagca
     1921 atggtaaaac ggtcgtgaag gagtggttgt atcagctttt gcataaagat tattctatta
     1981 cccgttcccc acgaagctac aattcgcaaa ttggtgtgcc gctttcggtt tgggccatga
     2041 acgaaaatac tcaattggga atttttgagg caggtatttc ggaaatgcac gaaatggagc
     2101 atttgcaacc gatcattcaa ccaacgattg gtatttttac caatttgggc gaagcgcatc
     2161 aggagaattt taccggtttg aagcaaaagt gcgaagaaaa gctgatactt ttcaaaaatg
     2221 cggaaaccct gatttattgc tcggataata agttggttga aatatccatt gcgcagtccg
     2281 attttaaagg caaattgttt tcctggggaa aatctgataa ggctgtggtg caaatcctgc
     2341 aaatagaaaa aaaggtttca aacaccaaca ttaagtttaa atattccgga aaagaatcgg
     2401 ctgtgagcat tccgtttact gacgatgctt ccattgagaa tgcattgcaa tgtgtagttg
     2461 tgatgttgca tttgggaata aaacaggacg aaattgcccg tcgcattttg caactcgaag
     2521 ccgtggctat gcggctggaa gtaaaagaag gcgtacgcga ctgtttgatt atcaacgata
     2581 gctataattc cgatttgaat tcactcagca ttgcgctcga ttttctgaac cagcaagcaa
     2641 cagctaaaaa cttatcgaaa acacttattc tatctgatat tctgcaaagc ggacaaacat
     2701 ctgacgactt atacaaaacg gtttcgggct tggttcaaaa taagaatgtg cagcgagtta
     2761 ttggcattgg aactgaaata tcaaaacaag ccgataagtt cgaaatagcg ga
//
LOCUS       DATDNM010000505         2084 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1026826, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000505 DATDNM010000000
VERSION     DATDNM010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1026826"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..796
                     /locus_tag="VI413_08590"
     CDS             <1..796
                     /locus_tag="VI413_08590"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6914720.1"
                     /translation="TPNAKVLEFGSATGYATRYMTEKFNCEVTCIEINPQMAEIGRNF
                     SKKMIVADIETDEWEKELESKFDYIIFADVLEHLRNPQLTISKAKQFLKENGYILTSI
                     PNIGHNAIIMNLRNGIFNYTEVGLLDNTHIHFLTRKSISKMFESNDLYCVAEEDKVIR
                     PCNTELECYYIQNPLLALSLIGKKDGHIYRYVQKWGFKQSETLQGKIVGEKFSTIEKL
                     FELTYDLLCYTKRKLGIQTLKLVDKILFKPIESKDKKRYEKYNSKS"
     gene            771..1766
                     /locus_tag="VI413_08595"
     CDS             771..1766
                     /locus_tag="VI413_08595"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6914721.1"
                     /translation="MKNIIPKVSIIVPIHNAGEHLTMCLDTLIHQTLTDIEIILVLDY
                     PIDGSDLIAKQYAEKDKRIVILENYLNLHIGNSRNRGIAIAKGEYIGFSDHDDYRELS
                     MYDELYARANINNSDIVLSFQFDSNTQSNPFFECNEIFDTKTKELILSDLIGFGNQEN
                     VGALFVNVTNNIYRNDFLKANAIQFVDTKQITPEDVIFQIECIYKAKKICLLKNVFYY
                     HNSHNSNESSNYSYISYQKRSAGLAHIYSFLKKENIFESYKDSFYTGVTKQFIFSLVG
                     TLYPEKNICMFIKAVKHLRSYPFCKIAFSKYALQPTKKRVINKLFRSFLIRLLKF"
     gene            1785..1976
                     /locus_tag="VI413_08600"
     CDS             1785..1976
                     /locus_tag="VI413_08600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914722.1"
                     /translation="MLNTSFSQTIQVKENQTANQYGSGLLPVFATPALIALMENTAMQ
                     LIELPEGSSSVGISINMKQ"
BASE COUNT          780 a          331 c          328 g          645 t
ORIGIN      
        1 aactccaaat gcaaaagtat tagaatttgg atcggcaact ggttatgcaa cccgttatat
       61 gaccgaaaaa tttaattgtg aagtcacgtg catcgaaata aatccgcaaa tggccgaaat
      121 aggtcgaaac ttttcaaaga aaatgattgt tgctgacatt gaaacagatg aatgggaaaa
      181 agagcttgaa tctaagtttg attatatcat ttttgcagat gttttggaac atttacgaaa
      241 ccctcaacta acaatatcaa aagccaagca attcctcaag gaaaatggat acattttaac
      301 ttcaataccc aatattggtc ataatgccat tataatgaat ttaagaaatg gaattttcaa
      361 ctatactgaa gtaggattat tagataatac acatattcac tttctaactc gcaaaagcat
      421 ctctaaaatg tttgaaagca acgacctcta ttgtgtggca gaggaagata aggttattag
      481 accgtgtaac actgaacttg aatgttatta tatacaaaat cctctactag cgctatcttt
      541 gattggaaag aaagatggac atatttacag gtatgttcaa aaatggggtt ttaagcaatc
      601 agaaacactt caagggaaaa ttgtaggtga gaaattttct actattgaaa agctatttga
      661 attaacatat gatttactct gctacacaaa acgtaagcta ggcattcaaa ccttaaaact
      721 tgtggataaa attttattca aacctatcga aagcaaagat aaaaagagat atgaaaaata
      781 taattccaaa agttagcata atagttccca tacataatgc aggtgaacat ttaaccatgt
      841 gtctggacac acttatacat caaactctaa ccgatattga aattatctta gtattagatt
      901 accctataga tggttctgat ttaatagcaa agcaatatgc agaaaaagat aaacgaatag
      961 ttattttaga aaattatttg aatttacaca tcggaaacag cagaaacaga ggaattgcta
     1021 tagcaaaagg agaatatatt ggcttttccg atcacgatga ctatagagag ctatcgatgt
     1081 atgatgaatt gtatgctaga gcaaatataa ataattcgga tattgtttta agcttccaat
     1141 ttgactcaaa cactcaaagt aatcctttct ttgagtgcaa tgaaattttt gatactaaaa
     1201 caaaagaatt gattttatcc gatctaatag gttttggcaa tcaagaaaac gtcggagcat
     1261 tatttgtaaa tgtaacaaac aatatttatc gaaatgactt tctaaaagca aatgctattc
     1321 aatttgttga cactaagcaa ataacccccg aagacgtaat atttcaaatt gaatgtatat
     1381 acaaggcaaa aaaaatatgt cttttaaaaa atgtgtttta ctatcataat tctcataatt
     1441 ctaatgaaag cagtaactat tcttacatta gttatcaaaa acgtagcgct ggattagctc
     1501 atatttattc cttccttaag aaagaaaata tatttgaatc atataaagat tctttttata
     1561 ctggtgttac caaacaattt attttttcac tcgtcggaac cttataccct gagaaaaaca
     1621 tttgtatgtt tataaaagca gtcaaacatc tacgttcata tcctttttgc aaaattgctt
     1681 tttcgaaata tgcgcttcaa ccaacaaaga aaagggtaat taataaactt tttcggagtt
     1741 ttcttataag gcttttgaaa ttctaacaac tgaatattta tttcatgctt aacacctctt
     1801 tttcacaaac aatccaggtt aaagaaaatc aaaccgccaa tcagtacggc tccggactac
     1861 ttcctgtttt tgccactcct gccttaattg cacttatgga gaatacagcc atgcaactta
     1921 tagagcttcc ggaaggcagc tccagtgttg gaatatctat caacatgaaa cagtgaatca
     1981 atcggaaaag ttgtgtgcat tagattaaaa ataataattt tgtctcatgg aaaaagagac
     2041 aggattgaaa tcagccgaac atcagttgtt ggaattaata ttgc
//
LOCUS       DATDNM010000506         2825 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1455083, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000506 DATDNM010000000
VERSION     DATDNM010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2825
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1455083"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /locus_tag="VI413_08605"
     CDS             complement(<1..534)
                     /locus_tag="VI413_08605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011965665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 95 protein"
                     /protein_id="HEY6914723.1"
                     /translation="MLLLLVICSLSSLSAQSNDYKLWYDRPAQVWTEALPLGNGRLGA
                     MVFGNPATEQIQLNEATIWAGSPNNNPNPEALKAIPQLRELIFAGKYVEAQALATQKV
                     MSATNQGMPFQPFGDLRISFPGHTRYTDYYRDLNLDSARTVVTYKVDGVTFKREAFTS
                     FTDQVMVIRLTASKKQQI"
     gene            complement(711..2687)
                     /locus_tag="VI413_08610"
     CDS             complement(711..2687)
                     /locus_tag="VI413_08610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010537915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3826 domain-containing protein"
                     /protein_id="HEY6914724.1"
                     /translation="MKKLFLSLIIISSCVSASNAQSYETQFAKPLGTVLQEISTRFNV
                     KIKYDADTTGKIVPFADFRIRPYSVEESLTNVLSLFDYKFAKQDEKTYKIKAYEYPRR
                     TPEDGKKMLAYLNSLYPDSAVWSARRVALKKEFRQLLQIDYVLAKRVHSKPILSKIRN
                     YDGYSVQNFAIETLPGLYVCGSIYNPLSKGKHALILCPNGHWGDGRYNKDEQTRFGTL
                     ARMDAVCVSYDLFGWGESELQVTMTAHRTSIAEIIQLMNGLTILDYMLTRKDIDPKRI
                     AANGGSGGGTQVVQLSVLDDRFTAACPTVNLASHFDGGCPCESGMPTMLACGGTNNAE
                     LLATFAPKPVCVISDGGDWTASVPELEYPYLQRIYGFFNAKNKVSNVHLPTEKHDFGI
                     NKRAAVYDFFIHTFGLDKNKLDETKVSIEPKEAMYSFGAKGEKMPANAIREFEQVEKF
                     FNKKADYKIHSDIDLEKRAKTFVDSLKINDKEKENRVFNVIKTHMKAVGDWHNDHPFT
                     IIPKGINPRTGELMTDVHRDVVACSTKPKSVHENLMMGLRKDLTEEQVEKVLDLYTIG
                     KYQFTLKGFKAIVPNMTEKEEAYVVSQLRQAREEAVDYKTMKGEISAIFEIYKDKCEK
                     YFNENGRSWKLMYKEFTNKLKAEKEAKKKAEEVK"
BASE COUNT          722 a          614 c          591 g          898 t
ORIGIN      
        1 aatttgttgt tttttggaag cagtcagccg aattaccatc acctgatcgg taaaggaggt
       61 gaaagcttca cgtttgaaag taactccatc cactttgtaa gtcaccacgg tacgtgctga
      121 atccaggttc aaatcgcggt aataatcggt gtagcgcgtg tgcccgggaa acgaaatgcg
      181 caaatcgcca aaaggttgaa aaggcatgcc ctgattggtg gccgacatta ctttttgtgt
      241 ggccaaagcc tgcgcttcca catattttcc ggcaaaaatg agttcccgca actgtggaat
      301 agctttcagc gcttccggat tgggattgtt gttcggactt ccggcccaaa tggtggcttc
      361 gttgagctga atttgttctg ttgccggatt gccaaaaacc atagctccca gtcggccatt
      421 acccagcggt aatgcttctg tccacacctg cgcagggcgg tcgtaccaaa gtttgtagtc
      481 gttggattgt gctgataacg aggataaact gcaaattacc aatagaagca gcatgcgtga
      541 tttagtcatt gaattgctca tttttcagat gtattttcac ttttcaaaag taatataaat
      601 gacgtaaaaa aaaggatttt gtacccaaaa tgaattggtt tcaggtaaaa taaaaatggc
      661 agtatgaagt taattcatac cgccattttc tatcttcccg aaaagggaaa ctatttcacc
      721 tcttccgctt tctttttcgc ttccttctcc gctttcagtt tgttagtgaa ttctttgtac
      781 atcaacttcc agctgcgacc attttcgttg aagtattttt cgcatttgtc tttgtaaatt
      841 tcgaaaatag cagaaatttc ccctttcatt gttttataat ctactgcttc ctcgcgggct
      901 tgtcgcaact gacttaccac gtatgcttct tctttttcag tcatattcgg aacaatagct
      961 ttaaatcctt tcagcgtaaa ctggtatttt ccaatggtgt ataaatccaa tactttctcc
     1021 acttgttctt ctgtcaggtc tttgcgaagc cccatcatca ggttttcatg taccgatttt
     1081 ggtttggtgg agcaggcaac cacatcgcga tgaacatcag tcatcagctc tccggttctg
     1141 ggattgatac cctttggaat aatggtgaac ggatggtcat tatgccagtc gcctacagct
     1201 ttcatgtgtg ttttgataac attgaataca cggttttctt tttctttgtc gtttatttta
     1261 agtgaatcga caaatgtttt agcacgtttt tccaaatcta tgtccgagtg aattttgtaa
     1321 tctgcttttt tattgaagaa tttttccact tgttcaaact cgcgaatggc attggcgggc
     1381 attttttcgc ctttggcccc aaaactatac atggcttctt ttggctcaat gctcactttc
     1441 gtttcatcta atttgttttt atcaagacca aaagtatgga tgaaaaagtc gtaaacagca
     1501 gcacgcttgt ttatgccaaa atcatgcttt tctgttggta aatgtacgtt tgataccttg
     1561 tttttcgcat tgaaaaatcc ataaatccgt tgcaaataag gatattccag ctcaggaact
     1621 gatgctgtcc agtcgccacc atcagaaata acacataccg gttttggtgc aaatgttgcc
     1681 agcaattctg cattattagt gccgccacaa gccagcatgg taggcattcc gctttcgcac
     1741 ggacaaccgc cgtcgaagtg ggatgccagg ttcaccgttg ggcaagcagc tgtgaagcga
     1801 tcgtcgagca ctgaaagttg tacgacctgc gttccaccgc ccgaaccacc attggcagct
     1861 atgcgtttgg ggtcaatatc tttgcgtgta agcatgtagt cgagaatggt caagccgttc
     1921 attaattgaa taatttcggc aatacttgtg cgatgtgcag tcatggtgac ttgtaattcc
     1981 gattctcccc acccgaataa atcataactc acgcacacgg catccatgcg ggccagcgtt
     2041 ccaaagcggg tttgttcgtc tttgttgtag cgtccgtcgc cccaatgtcc gttcggacaa
     2101 agaatcaacg catgtttgcc tttgctcaac gggttgtaaa tggaaccgca aacatacaag
     2161 cccggcaagg tttcgatggc aaaattctgt accgaatagc catcgtagtt gcggattttc
     2221 gacaaaattg gttttgaatg tacacgcttg gcaagcacat aatcaatctg caacaattga
     2281 cggaactcct tttttaaggc cacacgacgg gcactccaga ctgctgaatc aggatataag
     2341 ctgttcaagt aagccaacat tttctttcca tcttcgggtg tgcggcgcgg gtattcatag
     2401 gcctttattt tgtaggtttt ctcatcctgt ttcgcaaatt tataatcgaa aagcgacagc
     2461 acattagtca acgattcttc caccgaatac ggacgaatgc gaaaatcggc aaatggaact
     2521 attttcccgg ttgtgtcagc atcgtattta attttgacgt tgaagcgcgt actgatttcc
     2581 tgcaatactg ttcccagggg tttagcgaat tgtgtttcgt aggattgggc atttgatgcg
     2641 ctgacacaag aactaattat tatcagactt aaaaatagtt ttttcatggt ttttattgtt
     2701 aaatacatag acgcggagac acaaaattcg tgtctttgcg ttgatatatt acttggcaat
     2761 tttcaattct tccccattca caaatacgtc tttcagtttg atattcgagc aatttgtaaa
     2821 tgtag
//
LOCUS       DATDNM010000507         2233 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1133371, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000507 DATDNM010000000
VERSION     DATDNM010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2233
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1133371"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..933
                     /locus_tag="VI413_08615"
     CDS             <1..933
                     /locus_tag="VI413_08615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEY6914725.1"
                     /translation="GLYIAGEIGGMGLIRNAVTQGREAVENIVKTFNKSGKAEYDLLV
                     VGGGPAGISATLAAKKAGLKVITLEQETLGGTVATFPRSKIIMTHPMDLPLYGKVKLY
                     ETDKMELLELWNKVIDKNGITIRENSKVESIIKTDDAFTVETLAGDKYTAKRVLLAIG
                     RRGTPRKLHIPGEMTEKVAYRLLEPEEIGGKKVVIVGGGDSAVEAALSLCEQNAVTLS
                     YRGENFTRLKKRNAELIHAAMDNGKLVVKFNTNLTSIDRDSVSYKESDSSQIQIIEND
                     LVYIFAGGELPTQFLKKIGIQITTKYGEAVMKHK"
     gene            944..>2233
                     /locus_tag="VI413_08620"
     CDS             944..>2233
                     /locus_tag="VI413_08620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HEY6914726.1"
                     /translation="MAFFTKTYKFLLFAGLFISVFFNVSAQISPGDLSKSHANLEGVS
                     NCTQCHSVGNKVTREKCLACHKEIKTEIDARKGYHSSKEVGQKNCALCHSDHHGRSFD
                     MVRLNKKLFNHNLTGFALKGEHAKQECAACHKPAFIKDPALKKRTGTYLGLTQECLSC
                     HEDYHQGKLSSKCTECHNFNSWKNATGFDHSKTKFPLIGKHKTVACIDCHKFEVVNGK
                     KTQRFNGLQFANCTACHEDVHKNKFGQDCKRCHTEESFHFNKNMKTFDHDKTNFKLIG
                     KHKLVDCKECHKSGKLTDPIKHDQCQDCHKDYHNGEFKHWDGTKPDCNQCHTNDGFTP
                     STFTIEKHNKKFKLEGAHLATSCVACHKKDDHWTFRKMGKRCVDCHKNEHKGFIEDKF
                     MPNEDCTICHNVVSWGKVSFDHDKTGYKLEGEHARIAC"
BASE COUNT          748 a          455 c          502 g          528 t
ORIGIN      
        1 ggtttatata ttgccggtga aattggagga atgggcttaa tccgcaatgc tgttacccag
       61 ggacgtgaag ccgtggaaaa cattgtgaaa acgttcaaca aatcgggtaa agctgaatat
      121 gatttgctgg tggtaggtgg cggaccggct ggtatatcag ctacattggc agccaaaaaa
      181 gccggactga aagtgatcac actcgaacag gaaactttag gcggcactgt cgccacattt
      241 ccgcgctcta aaattatcat gacgcaccct atggatttgc cgctctatgg taaagtaaaa
      301 ctgtacgaaa ccgataaaat ggagttgctg gaactctgga ataaagttat tgataaaaac
      361 ggaatcacca taagggaaaa ttcaaaggtt gaaagtatta taaaaaccga tgatgccttt
      421 acggttgaaa cattggccgg agataaatat actgcaaaaa gagtattact ggctatcgga
      481 cgtcggggga caccccgaaa gctgcatata cccggtgaaa tgaccgaaaa agttgcctac
      541 cgcctgctgg aaccggaaga aatcggtggt aagaaagtcg tgattgttgg tggtggcgat
      601 tctgcggtag aagctgcact cagtctgtgc gaacaaaatg cagttacgct ctcctaccgt
      661 ggtgaaaact ttacacgcct gaagaaaaga aatgccgaat tgattcatgc tgccatggat
      721 aatgggaaac tggttgtaaa attcaataca aacctgactt cgattgatcg ggattcggta
      781 agttacaaag aaagtgattc aagtcaaatt caaataattg aaaatgattt ggtttatatt
      841 tttgccggag gcgagttacc aacacagttt ttgaaaaaga taggaattca aatcactacc
      901 aaatacggcg aagctgtaat gaaacacaaa taatctgcat actatggcat tcttcacgaa
      961 aacatataaa tttctgctct ttgccggact gtttatttca gtgttcttca atgtttcggc
     1021 acaaatatcg cccggcgatc tcagcaagtc gcacgccaac ctggaaggtg tgagcaattg
     1081 tacgcaatgc cacagcgtgg gcaataaagt gacccgtgaa aaatgccttg cctgccacaa
     1141 agaaataaaa acagaaatag atgcccgtaa aggataccac tcatcgaaag aagtaggcca
     1201 gaaaaattgt gccttgtgcc acagcgatca ccacggacgt agtttcgaca tggtgcgttt
     1261 gaacaaaaaa cttttcaacc acaatcttac cggattcgcg ctgaaaggcg aacatgctaa
     1321 acaggaatgt gcagcctgcc ataaaccggc attcattaaa gatccggcat tgaagaaaag
     1381 aaccggcaca taccttggtt tgacccagga atgcttatcg tgccacgaag attaccatca
     1441 gggaaaactt tcctctaaat gcaccgaatg ccataacttc aattcatgga aaaacgcaac
     1501 cggttttgat catagcaaaa caaaattccc gttgataggg aaacacaaaa cagtagcttg
     1561 tattgattgc cataagtttg aagtagtaaa tggcaagaaa acacaacggt ttaacggttt
     1621 gcaatttgcc aattgtacgg cttgccatga ggatgtccac aaaaataagt ttgggcagga
     1681 ttgcaagcgc tgtcacaccg aagagtcttt ccatttcaac aaaaacatga agactttcga
     1741 ccatgacaaa actaatttca aactgattgg gaagcataag ctggtggatt gcaaagaatg
     1801 tcataagtcc gggaaactga ccgatccgat taaacacgat cagtgccagg attgccacaa
     1861 agactaccac aacggcgaat tcaaacactg ggatgggaca aaaccggatt gtaaccagtg
     1921 ccataccaac gatggattta cgcccagtac attcactatc gaaaaacata ataagaaatt
     1981 caagcttgaa ggtgcccatt tagctacatc gtgtgtggct tgccataaaa aagatgacca
     2041 ctggacattc cgtaaaatgg gaaaacgctg tgtagattgc cacaaaaacg agcacaaagg
     2101 ctttattgaa gataaattta tgcccaatga agattgcacc atttgccata atgttgtcag
     2161 ttggggaaaa gtctcttttg accacgacaa aaccggttac aaactggaag gtgaacatgc
     2221 ccggatagct tgt
//
LOCUS       DATDNM010000508         3197 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2095881, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000508 DATDNM010000000
VERSION     DATDNM010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3197
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2095881"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..367
                     /locus_tag="VI413_08625"
     CDS             <1..367
                     /locus_tag="VI413_08625"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEY6914727.1"
                     /translation="WLFYLQHQYKDVVWEHTDKWDYRTIAMNGASYLKYPKILQWFSG
                     NIGFHHIHHLSYKIPNYNLEKCLLENKIFQKEYLTFFSSFQSTKYKLWDEEKHKLVSF
                     KEAIVLYICSSPSFATGEL"
     gene            579..1259
                     /locus_tag="VI413_08630"
     CDS             579..1259
                     /locus_tag="VI413_08630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914728.1"
                     /translation="MKKNLVLLLFQLVIVSGFSQTNESRIYSVDDVGDTIVSDQYGNK
                     LEVITKDIFGNTVIKDRDGHTIKSIGKDVFGNTVIKDGDGRKTQSIEKDIFGNTVVKD
                     GTGRTIRSYEKDIFGNTVVKNANGQSERTIGKDIFGNWEIKDQSGHVIKSVEKDIFGH
                     WVVKNSDRQVVETYETDIFGNLVVKDASGRTLVTYSKEFLEKQFPKNAINKQPGQSCI
                     EEFILSNW"
     gene            1317..2201
                     /locus_tag="VI413_08635"
     CDS             1317..2201
                     /locus_tag="VI413_08635"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6914729.1"
                     /translation="MKKILTLALALLAFAVCHAANNTPKQMETKTKEQLNFSSGYAEV
                     NGLNMYYEIYGQGEPLVLIHGGGSTIQTSFEKVIPLFAATRKVIAVELQAHGRTSDRD
                     ADLSFEQDADDVVALLEKLHIGKADFLGFSNGGTTTLQIAIRHPKAVRKIVLASALAK
                     RNGVPEWFWGFMEHASLDNMPEQLKAGYLKVAANPNGLRTMHDKDVKRGLNFKDIPDE
                     QIESIQAPTLIIIGDKDIITPEHALELHRQIANSDLAIIPGEHGECIGEITTIKPDFK
                     ESDLVVPMIEKFLNRKEK"
     gene            2208..2735
                     /locus_tag="VI413_08640"
     CDS             2208..2735
                     /locus_tag="VI413_08640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6914730.1"
                     /translation="MKKTILIILALATSFGCGYAFKAITTKQPDAAQETKKVTGIGGI
                     FFKCKDPRKMREWYKTHLGLQTNQYGTVFEWYHGADSTKKGFTQWSPFAEKTKYFEPS
                     TKDFMINYRVENIKTLVAGLKKEGVTVVDTIETYNYGKFVHILDMEGNKIELWEPNDI
                     EFEKLGKQLASKTTK"
     gene            2844..>3197
                     /locus_tag="VI413_08645"
     CDS             2844..>3197
                     /locus_tag="VI413_08645"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEY6914731.1"
                     /translation="MKQILITGATGNVGVEVIRFLERSGSTDKIIAGVRNIERAKEQL
                     KDFSNINFVGFDFEQPETFDNALKNTDTVFLLRPPHISDTEKYFRPLVQKIKEHGVKE
                     VVFLSVQGAEKSKVIP"
BASE COUNT         1122 a          589 c          697 g          789 t
ORIGIN      
        1 atggcttttt tatctccagc atcaatataa agatgtggtg tgggaacata ccgacaaatg
       61 ggattataga accattgcca tgaatggagc ctcctatttg aaatatccga aaattctgca
      121 atggttttcc ggtaatatcg ggtttcatca tattcaccac ttaagctata agatacccaa
      181 ttataactta gagaaatgct tgcttgaaaa taagattttc caaaaagaat accttacttt
      241 tttttcgagc tttcaaagca cgaagtataa gctctgggac gaagagaaac acaaactggt
      301 cagcttcaaa gaagcaatag tattatacat ctgctcatcc ccctcttttg caacgggaga
      361 gttatgatta aacgtttata acgaataaat gaaaaaagat acaagaaaaa ttgtgtcttt
      421 ttttgttaga aaaataatta tatttgtaaa taatataaaa gcaaatctta ttcattccgt
      481 tagtatcaga ggtaatctat ccatgatagc atgatttcaa atcatgctac cactaaacta
      541 accaacaagt tatataacct taaaagcaat cattacatat gaaaaagaac cttgtcttac
      601 ttttatttca attggtaatt gtgtcgggtt ttagccagac aaatgagtcc aggatctatt
      661 cggtggatga cgtgggagat actattgtca gcgaccagta tggcaacaag ctggaagtga
      721 taacaaaaga tatttttggc aacacggtaa taaaagatag agacggccat acaattaaat
      781 ccattggaaa agatgtattt ggaaacacgg tgataaaaga tggtgacggc cgtaagactc
      841 aatccataga aaaggatata tttggcaata cggtggtgaa agatggaact ggacggacta
      901 tacgatcata tgagaaggat attttcggga atacggtagt gaagaatgcc aacggacaaa
      961 gcgaacgaac aatcggaaaa gatatttttg ggaattggga gataaaggac caaagcgggc
     1021 atgttatcaa atcggttgaa aaagatatat ttggccattg ggtggtgaaa aattccgaca
     1081 ggcaggttgt tgaaacctac gaaactgata tctttggcaa tctggtagtg aaagatgctt
     1141 ccggcagaac cctggttacc tattcgaaag aatttcttga aaaacagttc ccgaaaaatg
     1201 caatcaacaa acagccgggc cagagctgca tagaggaatt cattctcagc aactggtgat
     1261 tcgcgtcgaa ctatcctaaa ggtgatgtgt ttataaggtt taaaagacca ataaatatga
     1321 aaaaaatact aaccttagca ctggcactgc tggctttcgc tgtgtgccac gctgcaaaca
     1381 acacaccgaa acaaatggaa acgaaaacaa aggaacagtt gaatttcagc tccggatatg
     1441 ccgaagtgaa cggattgaac atgtactacg aaatttacgg acaaggcgag ccacttgtgt
     1501 tgatacacgg aggcggttct acgatacaga caagttttga aaaagtgatt ccattgtttg
     1561 cagcgaccag aaaagttatt gcagtggaac tgcaggccca cgggcggaca agcgacagag
     1621 acgccgatct ttcgtttgaa caggatgccg atgacgttgt cgctcttctc gaaaagctgc
     1681 atataggcaa agccgacttt ctgggcttca gtaacggggg aacaactacg ctgcaaatcg
     1741 ccattaggca tccgaaagca gtccgtaaaa ttgttctggc ttcggcactt gccaaacgca
     1801 acggagttcc agagtggttt tggggattta tggaacacgc ctcgctggat aacatgcctg
     1861 agcaattgaa agcgggatac ctaaaagtag ctgccaaccc gaacggtttg cgaaccatgc
     1921 acgacaaaga tgtcaaaagg gggttaaact ttaaagatat tcccgatgag caaatcgaat
     1981 ccattcaggc gccaaccctg atcattatcg gcgacaaaga cattattacg cccgaacatg
     2041 cactggagtt acaccggcaa atagccaatt ccgacttggc aattatcccg ggcgaacacg
     2101 gagaatgtat cggcgaaata accactataa aaccggactt caaagaaagt gacctcgttg
     2161 ttccgatgat cgaaaagttt ctgaaccgaa aagaaaaata gaaagatatg aaaaaaacga
     2221 ttttgataat tctagctctt gcaacatcat tcggttgcgg ctatgccttt aaggcaatca
     2281 caacaaaaca acctgacgcc gcgcaggaaa cgaaaaaggt aacaggtatc ggaggtatat
     2341 tttttaaatg caaagacccc cgtaaaatga gagaatggta taaaacacat ctcgggttgc
     2401 agacaaacca gtatgggaca gtatttgaat ggtaccacgg agcagattct accaaaaaag
     2461 gatttaccca atggagtccg tttgccgaaa aaacaaaata ctttgaacct tcgacaaaag
     2521 actttatgat caattacagg gttgaaaata tcaaaacgct tgttgccggg ttgaaaaagg
     2581 aaggtgtaac tgttgtggac acaattgaaa cgtataacta tggtaaattt gtgcatattc
     2641 tcgacatgga agggaataaa attgagttat gggagccaaa cgacatcgaa tttgagaaat
     2701 taggaaaaca acttgccagc aaaaccacaa aatgaagtta tagggaataa acgcatgaaa
     2761 cgagcattta attaggctta aatcaacgag catgaaaatc taatgcgagt tccatgtgac
     2821 ctttaaaaaa caataattta cgcatgaaac agatattaat aacaggagca acgggaaatg
     2881 tgggagttga agtaatccga tttttagaaa gaagcggatc tacggataaa ataattgccg
     2941 gtgtacggaa catcgaacgc gcaaaagaac agttgaagga tttttccaac attaattttg
     3001 tcggttttga tttcgagcaa ccggaaacat tcgataatgc cctgaaaaac accgataccg
     3061 tatttttgct ccgtccgcct catatttccg atactgaaaa atacttccgg ccattggttc
     3121 aaaaaatcaa agaacacggg gtgaaagaag ttgtatttct gtcggtgcag ggagctgaaa
     3181 aaagcaaggt gataccg
//
LOCUS       DATDNM010000509         3292 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1881841, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000509 DATDNM010000000
VERSION     DATDNM010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3292
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1881841"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            256..870
                     /locus_tag="VI413_08650"
     CDS             256..870
                     /locus_tag="VI413_08650"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY6914732.1"
                     /translation="MKLTKKQQIEHKAKELFWKHGFKKVTIDEICKKANVSRKTFYTF
                     YENKTALVLFILKEMTDDAFVETRKIIDSELSFSEKLEKMLAMKFERSSDFSKEFVAD
                     FYNPDAKEMLEYFNKIIAESMALVYEFYGNAQKTGEMNPDLNLDYVMWLMQKLVELCS
                     TKEFMEIFPDVNSMTRQISHSIIYGIMPVKQDDRANIKEPRHEM"
     gene            860..2020
                     /locus_tag="VI413_08655"
     CDS             860..2020
                     /locus_tag="VI413_08655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914733.1"
                     /translation="MKCKLIVVLVLLFCLNELSAQNDSTHLTFNGQVTTWGIVQFENP
                     LPTQFGGRFVPTLLGNFKLTPNTKLDFEASLNLNGTINFTGLQKDTMLGQLKPYRVWL
                     RYSGDNWEVRAGLQKINFGSAKMFRPLMWFDAMDVRDPLQLTDGVYGVLGKYFFQNNA
                     NLWAWGLIGNKNPKGYELWGTTQWKPEVGGRFEMPAGPGEIALSTNHRKLRFQNPISS
                     SLDVNELNESRVGLDGKWDVGIGLWFESSVTLTDVGNINSSYLPKVQDMWNLGADYTL
                     PIGSGVGVTLEYFRYHAGDKFVVAGNSVSVLGTMLTYPLSVLDNLSGMVFYLPGQNKW
                     MNYLSWGRTYDNLNIYAIGYWNPDNVQLALTQSQSRNMFAGKGIQIMLNYNF"
     gene            2074..2766
                     /locus_tag="VI413_08660"
     CDS             2074..2766
                     /locus_tag="VI413_08660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6914734.1"
                     /translation="MKTIVEVKKLVKRFPIGTGSFTALDGLNLQFSEGEFTGLVGPSG
                     SGKTTLLNIIGSLDIPSEGEVVVLSNSVGKLTPKEAAKLRKEKLGFIFQHYNLLAVYT
                     VFENVEFPLLLMNMSADERKQRVMETLAWVGLTDKVKSRPAQLSGGECQRVAIARAMV
                     KRPMLVLADEPTANLDSANSHNILQTMAKLNEELKTSFIFATHDEKVIGYLRRIIRLQ
                     DGKVVADEVVNP"
     gene            2877..>3292
                     /locus_tag="VI413_08665"
     CDS             2877..>3292
                     /locus_tag="VI413_08665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914735.1"
                     /translation="MKLFKTAFRSLIGNGLKTWLNVFVLSISFVLILLLQGILKGWSN
                     QAVDDTVKWEIADGQYWQSKYDPFDPFTFDSSTVQIPPVFKGDVDKHLIEPILITQGS
                     IYPQGRMQGVLLKGIRPDQKLLKIPTQKLNTKSDEIP"
BASE COUNT         1002 a          539 c          791 g          960 t
ORIGIN      
        1 tgctccgaaa tagagcaata tgaagctgct ttgtgcagta attcatccag cgtatattct
       61 tttttcttaa tgttgtagtg cttacatgat tcacaagtaa aattaactca caaatgtaac
      121 tattttcttt gtttcagagg atgttatttc gcttcaaata attatttttc aaaaaaagta
      181 aaacttaagg tgacaaaata ttgttttgta gataaaaaat gtaactttgc tgcgtaattg
      241 tttacagtaa gaactatgaa attaactaag aaacaacaaa tagaacacaa agcaaaggaa
      301 cttttttgga agcatggctt taaaaaagtg actattgatg aaatatgtaa aaaggcaaat
      361 gtcagtcgca aaacatttta caccttttat gagaacaaaa cagctttggt gctatttata
      421 ctcaaagaaa tgactgatga cgcatttgtc gaaactcgta agattattga tagtgagtta
      481 agtttttctg aaaagcttga aaaaatgttg gcgatgaaat ttgaacggag cagcgatttt
      541 tcaaaagagt ttgtagcgga tttttacaat cctgatgcca aagagatgct ggaatatttc
      601 aataagatta tagctgagtc gatggcatta gtttacgaat tttatggaaa tgcccagaaa
      661 acaggcgaaa tgaatcctga tttgaatctg gattatgtaa tgtggcttat gcagaaactc
      721 gtggaacttt gtagtacgaa ggagtttatg gaaatattcc ccgatgtaaa ttcaatgaca
      781 aggcaaattt cgcacagtat tatttatggt ataatgcctg taaaacaaga tgatagagcc
      841 aatataaaag aaccaagaca tgaaatgtaa attaattgtt gttcttgttt tgttattttg
      901 tctgaacgaa ttgtcagctc agaacgattc aacccactta acattcaacg gtcaggtgac
      961 gacgtgggga attgtacagt tcgaaaaccc gcttccaact cagtttggcg gacggtttgt
     1021 acctactttg ttgggaaatt ttaagctgac acctaacaca aaactggatt ttgaagcatc
     1081 gttgaacctg aatggtacaa taaattttac tggtttgcaa aaagacacca tgttgggcca
     1141 actaaaacct tacagggtgt ggttgcgcta ttcgggtgat aattgggaag tccgtgccgg
     1201 attgcagaaa attaatttcg ggtcggctaa gatgtttcgt ccgcttatgt ggtttgatgc
     1261 catggatgtg cgtgacccgc ttcaattgac cgatggagtt tatggtgtgc tgggaaagta
     1321 tttcttccag aataatgcga atttgtgggc ctggggatta atcggtaata aaaatccgaa
     1381 aggatatgag ctgtggggaa caacgcaatg gaagccggaa gtgggtgggc gttttgaaat
     1441 gccagccgga ccaggtgaaa tagctttaag tacgaatcac agaaaattga gatttcaaaa
     1501 tcctatatcg agttcattgg acgtgaatga actaaacgaa tcgcgagtag gattggatgg
     1561 gaagtgggat gttggaattg gcttgtggtt tgaatcgagt gtgacactca ctgatgtggg
     1621 aaatatcaac tcgtcatact taccgaaagt acaggatatg tggaacctgg gtgcagatta
     1681 taccttgcca atcggaagtg gagtgggagt gacgcttgaa tatttcagat accatgccgg
     1741 tgataaattt gtggttgcag gtaattctgt gagtgtgctt ggaacaatgc tgacgtaccc
     1801 gctttctgtg ttggacaacc tgtccggaat ggttttttat ttgcccggtc aaaataaatg
     1861 gatgaattac ctcagttggg ggcgtacata cgacaacctg aatatctacg ccattggata
     1921 ctggaatccg gataatgttc agttggcgtt gacgcaatcg caaagccgca atatgtttgc
     1981 cggaaagggg attcaaatta tgctgaatta taatttttaa tcgaactttt ccaaagtttt
     2041 aaactttggg aaagttgaaa agatagacta tttatgaaaa caatcgtaga agtaaagaaa
     2101 ttagtgaaaa gattccctat cggaacgggt tcatttacgg ccctcgatgg tttgaacctg
     2161 cagttttccg agggggaatt taccggtttg gtagggccga gtggctcagg taaaacgact
     2221 ttgttgaata taatcggttc gttggatatt ccttcggaag gtgaagtcgt ggttttaagt
     2281 aattcggtag ggaagctgac acctaaggaa gctgcaaaac tccgcaagga aaaactgggt
     2341 tttatttttc agcattacaa cctgttggcc gtttacacag tgtttgaaaa cgttgagttc
     2401 ccgttgttac tcatgaatat gtcggctgac gaacggaagc agcgggtgat ggaaacgctg
     2461 gcctgggttg gtttgactga taaagtgaaa tcgcgtccgg ctcagttgtc gggaggggaa
     2521 tgccaacgag tggctattgc acgggccatg gtaaagcgtc cgatgttggt actggccgat
     2581 gagcctacgg caaatcttga ttcagccaac tcgcacaata tattacaaac catggctaag
     2641 ttgaatgaag agttgaaaac gagctttatt tttgccacgc acgacgaaaa agtaatcggc
     2701 tacctgagac ggataattcg tttgcaggat ggaaaagtgg tggctgatga agtagtgaac
     2761 ccctaacccc taaagggtaa ccgggttact tttgttgtat aactgttttt tttgagaata
     2821 agagtttaga cgaataatac taatttcatt cccctttagg gggtaggggt aacattatga
     2881 aactatttaa aacagctttc agaagcttaa taggcaacgg tctgaaaacc tggctcaatg
     2941 tgtttgtgct ttccatttcc tttgtgctga ttcttcttct gcaggggatt ttgaaaggct
     3001 ggagcaatca ggcagttgat gataccgtga aatgggaaat tgctgatggc cagtattggc
     3061 agtcgaaata tgatccgttc gatccgttta cattcgattc cagtacggtt caaatcccgc
     3121 cggttttcaa aggggatgta gataaacatt taatcgagcc cattttgata acgcagggaa
     3181 gcatttatcc gcaaggaaga atgcaaggtg tactgttgaa aggaattcgg cccgaccaga
     3241 aattactgaa gatacccacg caaaaattga atacaaagtc ggatgaaatt cc
//
LOCUS       DATDNM010000510         2001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_706360, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000510 DATDNM010000000
VERSION     DATDNM010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_706360"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..850
                     /locus_tag="VI413_08670"
     CDS             <1..850
                     /locus_tag="VI413_08670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006841642.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HEY6914736.1"
                     /translation="INAGFTCPNRDGSKGRGGCTYCNNQSFSPEYCKPVKTVSQQVEE
                     GINFFKHKYQNQYYLTYFQSYTNTYDSLDNLKAIYEEALSHPQVKGIVIGTRPDCVND
                     ELLDYFAELSKSVYVMIEYGIESTNDETLEFINRGHDFACAEEAIRATAKRGIKTGAH
                     LILGLPKEDRETILSHADRISELPLTAIKLHQLQLVRKTVMAKQYVEHPEWFNFYTAN
                     EYIDLLIDFVERLNPNIAIERFISQSPPSLIIAPEWGLKNFEFAVKLEKRLAERDSWQ
                     GKLFSR"
     gene            1013..1468
                     /gene="bcp"
                     /locus_tag="VI413_08675"
     CDS             1013..1468
                     /gene="bcp"
                     /locus_tag="VI413_08675"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005924336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEY6914737.1"
                     /translation="MALQVGDKAPAVLGVNQDGKEIKLADFAGKKLVLYFYPKDNTPG
                     CTAQACSLRDNYDDLRKEGYEVIGVSTDSASSHQKFIAKQNLPFNLIADTDKKLSEVF
                     GTWGEKSLYGKQYMGTFRTTFIIDETGTITRIMLPKEVNTKIHASQILG"
     gene            1622..>2001
                     /locus_tag="VI413_08680"
     CDS             1622..>2001
                     /locus_tag="VI413_08680"
                     /inference="COORDINATES: protein motif:HMM:NF015868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEY6914738.1"
                     /translation="MRKQLILAFILFSIQLEAQSWKLIWSDEFNYTGLPDSTKWIHEV
                     GNIKNSELQHYTTRRTENSIVKNGNLHIIARKEDFQQAKYTSARLSTDTKFNFKYGKI
                     EARIKTSTGKGLWPAFWLLGQNIN"
BASE COUNT          659 a          413 c          405 g          524 t
ORIGIN      
        1 catcaatgcc ggctttacct gccccaatag agacggaagc aaaggccgtg gtggttgcac
       61 ctattgcaat aaccaaagct ttagcccgga atattgcaaa cctgtaaaaa ccgtcagcca
      121 gcaggtggaa gaaggtatca acttctttaa acacaaatat caaaaccaat attaccttac
      181 ttattttcag tcgtatacca atacctacga ttcgcttgac aacctgaaag ccatttatga
      241 ggaagctctc tcccaccctc aggtgaaggg aattgtgatt ggaacccgtc ccgactgtgt
      301 aaacgatgaa ttgctcgatt attttgcaga attgtccaaa agcgtttatg tgatgattga
      361 atacggtatt gaatcgacca atgatgaaac gctggaattt ataaaccgtg gccatgattt
      421 tgcctgcgcc gaagaagcca ttcgtgcaac agccaaaaga ggcattaaaa ccggagcaca
      481 cctgatactt ggattgccca aagaagaccg cgagacaatc ttaagtcatg ctgaccggat
      541 ttcggaatta ccactgacag ctatcaagtt acatcagttg cagttggtac gaaaaacagt
      601 tatggccaaa caatatgttg aacatcccga gtggtttaac ttctacacgg ccaacgaata
      661 tattgatttg ctgattgatt ttgtagagcg attaaatccc aacattgcta tcgagcgctt
      721 catttcccaa tcgcctccga gccttatcat cgcaccggaa tgggggctaa aaaactttga
      781 attcgctgta aaactggaga aaagactggc cgagagagat tcctggcagg gaaagttatt
      841 tagtcggtag ttttgagttc cgggttttga gaaaatttca ggacaatgtg aactctttaa
      901 ttgcatttgc gttaaataga agacagtaaa tttcaatttt tatcttttaa attataattt
      961 cacttccata taaccccatt cgggcgttgg gggtataaaa caataaatta tcatggcatt
     1021 acaagtaggc gacaaagctc ccgccgtgtt gggagtaaat caggacggaa aagaaattaa
     1081 actggctgat tttgcaggca aaaaactggt tttatacttt tatccgaaag acaatactcc
     1141 gggctgcaca gcgcaggcat gcagtttgcg cgacaactac gacgatttac gtaaggaagg
     1201 ctacgaagtg attggagtaa gtaccgacag tgcttcatcg caccagaaat tcatagccaa
     1261 acaaaactta ccgtttaatc tgattgcaga caccgacaaa aaactttctg aagtatttgg
     1321 aacctggggt gaaaaatcat tgtacggcaa acaatacatg ggcacattcc gaaccacttt
     1381 tatcattgac gaaacaggaa cgattacacg tatcatgctg ccgaaagaag taaatacgaa
     1441 aatccacgcg tctcagatac tcggataaaa gcaatttcgg gtttttcaaa actcatattt
     1501 tatctacatt taaattcccg cagattattc agagaaatgc agactataat ctgtataaag
     1561 accgcatgat cttcgggaat ctttttaacc tgagcacaaa gcaataactt attgtttgac
     1621 aatgagaaag caactaattc tggcatttat tcttttttca attcaacttg aagcgcaatc
     1681 gtggaagttg atatggtctg acgaattcaa ttataccggc ctgcccgact ccaccaaatg
     1741 gattcacgag gttggaaata taaaaaacag tgagttgcaa cattatacaa cccgtcgtac
     1801 tgaaaacagc attgtaaaaa acggcaattt acacattatt gccaggaagg aagattttca
     1861 acaggcaaaa tacacgtcgg ccagactgtc aaccgatacc aaattcaatt ttaagtacgg
     1921 aaaaatagaa gcccgtataa aaacatcaac cggcaaaggc ttatggccgg ccttttggct
     1981 gttgggtcaa aatataaatg a
//
LOCUS       DATDNM010000511         4644 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_813745, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000511 DATDNM010000000
VERSION     DATDNM010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4644
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_813745"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1079
                     /locus_tag="VI413_08685"
     CDS             <1..1079
                     /locus_tag="VI413_08685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005384 - manganese ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030026 - intracellular manganese ion
                     homeostasis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HEY6914739.1"
                     /translation="QTEIDACYLYRKLAENESNEAVANVFRQMGEIEQSHAEAFARRE
                     NVTLENLIAPSWRAKTINLIGKIFGYDYVLGALMDTEKSLSNAIIKTKERNKLEITGA
                     ETNHVKILWSILENDKNISGAQHAKFEKRHRSVGGNAIRAAVLGGNDGLVSNFSLVMG
                     IAGATAGGQGVLLAGTAGLLAGALSMALGEWISVKSSQELYENQMAIEMDELETNPEG
                     EQRELALIYIAKGIPEAQAHTMAAEIMKDKTHAHAVLVKEELGINADELQGSAIEAAL
                     YSFFLFAIGAVIPLAPFMFTTGFHAIILSVISSACGLFLIGGAITLFTGKNLLYSGFR
                     QVLFGLIAAAITFGIGNLIGVAIA"
     gene            complement(1107..2753)
                     /locus_tag="VI413_08690"
     CDS             complement(1107..2753)
                     /locus_tag="VI413_08690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEY6914740.1"
                     /translation="MKIKLAAFVFLIITVSSCKQNEIVPPLTSTYIESVSVNGRSVYS
                     GENVYNVPIDSVVIRLVFSSTINKKEIDPTKLYISNGIDTSFAIQADTASRQLTFRIR
                     KTLNYYTNYTLYIANGENLGVKLIDSFQFTFVTELDKTPKFPTITDDSLLTLTQKQTF
                     KYFWNYAHPTSGLARERLGSDEIVTSGGSGFGVMTIPVAIERGFITRQQGYERMNKIV
                     GFLTNTVEKFHGAFPHWLNGTTGKVIPFGTKDNGADLVETAFLMQGLLTVQSYFKNGN
                     TAEKAMCTSIQTLWENVEWDWFQQNGQQKLYWHWSPTYNWDMNMSVTGWNEGLIIYVL
                     AASSPTHSITKSVYDNGWARNGAIKNGKTFFGITLPLGEDNGGPMFFAHYSFLGLNPT
                     HLSDTYANYWTQNTAHAQINYWYCVANPKKNFGYGVDCWGLTASDIPNSYTASSPNND
                     GGTIAPTAALASFPYTPTESMRALHFFYYTVGDKIWGEYGFKDAFNLNKHWFADSYLA
                     IDQGPIVVMIENHRTGLLWNLFMQNSNVQVGLTKLGFSYQ"
     gene            complement(2896..3777)
                     /locus_tag="VI413_08695"
     CDS             complement(2896..3777)
                     /locus_tag="VI413_08695"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HEY6914741.1"
                     /translation="MKTIKLLSVLVVAAMAVSFSSCKTKDEPLPPIGGYNNADEVAQA
                     DLVAYWPLNGNGIESKSSAAPATTKNVTWIDGLKGQAASFNVGYLAYNAIANLGTNLQ
                     SGFTISAWIKVANNGSNPSVFFSMSRPNEWAGNINFMAETGWMPATSDSLTVKGLLVS
                     SSDLGWQDTRNTVKSSAADITAGHIPYANKIGGKWAHAVYTWDNTTKLAKIYVNGVKI
                     SNPVWENRDATGTKNFTMTTPTRPIIGALETFVTGATTDAWNTGLVGQLDEIRVWKRA
                     LILSDIGALYELEKAGR"
     gene            complement(3823..>4644)
                     /locus_tag="VI413_08700"
     CDS             complement(3823..>4644)
                     /locus_tag="VI413_08700"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914742.1"
                     /translation="ADVGRATKGAAQGLLSKVYLYEKKWNEAFSMSGNVIDSKQYSLL
                     ANYADVWREIGENGSESLFEIQATLGKGVQGYTDVQSGRGTPDHGWGFNTPTVNLANA
                     YEPGDKRKDATIMFTGQVLWDGFQTPTSGWTNPRYNYKAYQSRTAESWDDNKGETAKN
                     VRLLKYSDVMLIRAESAFQIGNTAEALNQVNRIRIRAGLDTLTTVTLEQIYKERRLEM
                     AMEHDRWFDIVRTGQASAAMTAVRQVFIVGKHELFPIPEEQITLSKGILTQNPNY"
BASE COUNT         1317 a          975 c          921 g         1431 t
ORIGIN      
        1 tccagacaga aattgatgcc tgctatttgt accgaaaatt agccgaaaat gaatcgaatg
       61 aggctgtcgc caatgtattt cgtcaaatgg gcgaaataga gcaaagtcat gccgaagctt
      121 ttgcacgcag ggaaaatgtc acgctcgaaa atcttattgc accttcatgg cgggctaaaa
      181 ccatcaatct gataggaaag atatttggtt acgattatgt gctgggcgca ttgatggata
      241 ctgaaaaaag cctgtcgaac gccattatta aaactaaaga aagaaacaaa ctggagataa
      301 caggagcaga aactaaccat gtaaaaattc tgtggtcgat tctggagaat gataaaaata
      361 tctcgggtgc tcaacatgcc aaattcgaaa agcgtcatcg gtctgtgggc ggaaatgcta
      421 ttcgtgctgc agtgctaggt ggaaacgacg gattggtttc caatttcagc ctggtaatgg
      481 gaattgcggg agctactgcc ggaggacagg gagttttgct ggcaggaacc gcaggtttat
      541 tggctggagc attatccatg gccttaggcg aatggatttc ggtaaaaagt tcgcaagaat
      601 tgtacgagaa ccaaatggcc atagaaatgg acgagctgga aacaaatccc gaaggcgaac
      661 aacgcgaatt ggccctgatt tatattgcca aaggaattcc ggaggcccag gcacacacta
      721 tggcggccga aattatgaag gacaaaaccc atgctcacgc cgtgcttgtg aaagaagaac
      781 ttggaataaa tgccgatgaa cttcagggct cagctatcga agcagcttta tattctttct
      841 ttttatttgc cattggtgct gtaatcccat tagcaccatt tatgttcaca acaggttttc
      901 acgctattat tttgagcgta atttccagtg cctgcggttt attccttatt ggtggggcta
      961 ttacattatt taccggaaaa aatctcttgt actcaggctt ccgtcaggtt cttttcgggc
     1021 tgattgctgc agccataacc tttggaatag ggaatttgat tggagtggct attgcgtaat
     1081 ctattcatat tgagatttct attagctcat tgataactaa atcccaattt tgtcaaccca
     1141 acttgtacat tcgaattttg cataaacagg ttccagagta atccggtgcg atgattttca
     1201 atcataacta caattggtcc ctgatcaata gcaagatatg aatcggcaaa ccaatgttta
     1261 ttgaggttga aagcatcttt gaaaccatat tcgccccaaa ttttatcgcc aacagtataa
     1321 taaaagaaat gcaatgcccg catactttca gttggcgtgt aaggaaacga cgcaagtgct
     1381 gctgttgggg caattgttcc accatcattg tttggcgatg aggctgtata actatttgga
     1441 atgtcgctgg ccgttaatcc ccaacaatca actccatagc caaaattttt tttcggatta
     1501 gccacgcaat accagtaatt gatttgcgcg tgagccgtgt tttgtgtcca gtaattagca
     1561 taagtatccg ataaatgtgt gggatttaga cctaaaaatg agtaatgggc aaaaaacatc
     1621 ggacctccat tatcttctcc caaaggaagt gtaatgccaa aaaatgtttt accattttta
     1681 atggctccgt tacgcgccca accgttatcg taaaccgatt tggtgatgga atgagtcggc
     1741 gatgaagcag ccagtacgta aataatcaac ccttcgttcc accctgttac ggacatattc
     1801 atatcccaat tataggttgg cgaccaatgc cagtagagtt tttgttgtcc attttgttga
     1861 aaccaatccc attccacatt ttcccaaagt gtttgaatac tcgtacacat tgctttttcg
     1921 gcagtattcc catttttaaa ataagattga acagtgagca acccttgcat tagaaatgca
     1981 gtttccacta agtcagcacc attgtcttta gtcccaaatg gaataacttt tcccgttgtt
     2041 ccgttcagcc agtgtggaaa agctccatga aatttttcta ccgtatttgt caagaaaccg
     2101 actattttat tcatgcgttc gtacccttgc tggcgggtta taaaaccacg ttcaattgct
     2161 accggaatag tcatcactcc aaaaccagaa ccaccagagg taactatttc atctgaacca
     2221 agccgctcac gagccaatcc ggaagtggga tgtgcatagt tccaaaagta tttaaaagtt
     2281 tgtttttgtg tcaatgtgag cagactgtca tcagtgattg ttggaaactt aggggtttta
     2341 tccagttcag taacgaaagt aaactggaac gaatcaatta attttacacc cagattttcg
     2401 ccattggcaa tgtaaagggt gtaatttgtg taataattca atgttttacg aatgcggaaa
     2461 gtaagttgcc ttgaggctgt atctgcctgg attgcaaacg atgtgtcaat gccattgctt
     2521 atataaagct tggtcgggtc aatctctttt ttattaatcg ttgacgaaaa gacaagacga
     2581 ataacaacgg aatctatcgg cacattgtac acattttcac cggagtaaac tgaacgtcca
     2641 ttgacactta ccgattcaat ataggtgctg gtcaaaggag gtacaatctc attttgctta
     2701 caagatgaaa cagttatgat taaaaatacg aaagcagcta attttatttt cattttgcgt
     2761 aagcaatatt agagaattct tcattgaaaa caagatgttt aaatgtcaaa aactgtaggt
     2821 agtcaattac ctacctacag ttttgtctct agttcagcaa atcgtggaga tttgctgaac
     2881 tttatttttc aagtattatc tacctgcctt ttccagttcg tacaatgcgc caatgtctga
     2941 aagaatcaat gcgcgtttcc aaaccctgat ttcgtcaagt tgcccaacaa gaccagtatt
     3001 ccaggcgtca gtagttgccc ctgttacaaa agtttcaaga gccccaataa taggacgtgt
     3061 tggagttgtc attgtaaagt ttttagttcc ggtggcatct ctgttttccc aaaccggatt
     3121 tgaaattttc actccattta cataaatctt agccaatttg gttgtattgt cccaggtata
     3181 aacagcatga gcccattttc ctccgatttt atttgcgtaa ggaatatgac ctgctgtgat
     3241 atctgcggca cttgatttta cagtattccg tgtatcttgc caacctaaat ccgagcttga
     3301 aacaagcaag ccttttaccg tcaaactatc gctagttgcg ggcatccagc ctgtttcagc
     3361 cataaagtta atgtttccgg cccattcatt aggtctcgac atagaaaaga atactgatgg
     3421 attgcttcca ttatttgcta ctttgatcca cgcgctgatt gtaaatccac tttgtagatt
     3481 tgtgcctaaa ttggcaattg cgttatatgc caaataccct acattaaaac tggcagcctg
     3541 accttttaag ccatctatcc atgtaacatt tttagttgtt gcaggcgcag cgcttgactt
     3601 tgattcgatg ccattgccat ttaatggcca ataggcaacc aagtcagctt gtgcaacttc
     3661 gtcggcattg ttatatccac caattggagg aagaggttca tccttagttt tacaactact
     3721 aaaacttact gccattgcag caacaactaa cacacttaat aatttgattg ttttcatttg
     3781 tttcatttgt tttaaagtta ataattcatt tattttaggt aattaataat ttggattttg
     3841 agttaatatg cctttgctca atgtaatttg ttcttcggga attggaaata attcatgttt
     3901 accaactata aatacttgtc ttacagcagt catcgctgct gatgcctggc cggttcggac
     3961 aatatcgaac caacgatcgt gctccatagc catttccaat ctgcgttctt tatatatctg
     4021 ctcaagggtt acagtcgtca acgtgtccaa tccggctctt attcttattc tattgacctg
     4081 attcaaagct tctgccgtat ttccaatttg gaaagcagat tcagctctta tcaacattac
     4141 atcgctatat ttaagcaacc tgacgttttt ggctgtttcc cctttgttgt catcccacga
     4201 ttctgcagtc ctgctttgat aggctttgta attgtaacgt ggatttgtcc agccactggt
     4261 tggagtctgg aaaccatccc acaaaacttg acctgtaaac ataatggttg catctttccg
     4321 tttatcacca ggttcgtaag catttgccaa atttacagtc ggcgtattga acccccaacc
     4381 atgatcaggt gtaccacggc cactctgaac atcagtgtaa ccttgtacgc ctttcccaag
     4441 ggttgcctga atttcaaaaa gagactcgga accattttca ccgatttcgc gccaaacatc
     4501 tgcataattt gctaacaagc tatattgttt gctgtcgatc acatttccgg acatcgaaaa
     4561 tgcctcattc catttttttt catacaaata cacttttgac aaaagtcctt gtgctgcacc
     4621 ttttgtggca cggccgacat ctgc
//
LOCUS       DATDNM010000512         5622 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1668910, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000512 DATDNM010000000
VERSION     DATDNM010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5622
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1668910"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(409..3012)
                     /locus_tag="VI413_08705"
     CDS             complement(409..3012)
                     /locus_tag="VI413_08705"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6914743.1"
                     /translation="MRFKIYALLLSLAFGLTSFAQNNQTQLTGHVKDGATGETLVGVT
                     VQVEGTKDAVKTDINGSFNLKTTKKLPFTIVVNYVGYQKQENIIESVDGDFVFEIRQS
                     TNLLSKVVVTSRRRSETAQNIPIPISVIGGALVTETGAFNVNRIKELVPSVQLYSSNP
                     RNTGLNIRGLGSSFGLTNDGIDPGVGFYVDGVYFARPAATTLDFIDVEQIEVLRGPQG
                     TLFGKNTTAGAFNITTKKPSFTPGANFELSYGNYGYIQAKTSITGPITKNIAARVSFS
                     GTQRDGLLTNVLTQQKVNDLNNLGVRGQLLFKLSDNTTAILAADATRQRPNGYAQVVA
                     GVVTTKRAAYRQFNNIIADLGYSLPSTNPFDRLIDQDTPWRSNQDLGGVSLNIDTKVG
                     TGTLTSTLAWRYWNWDPSNDRDFTGLQALALSQATSKHKQWSQEVRWAGSLGSKVTGV
                     FGLFAIGQDLRTDPYHTEESGKDQWRFAKNTTGVVGGVDQDALWATPGLFDGYGIHTT
                     SLLNTFSGALFGQVDWAITDKLHVLPGIRANYDQKKVDYKRETYGGIANPTAAQLKLL
                     KGVYSNQAFIADTSNTNYSGQLTVAYKVGRKINAFATYAKSYKPVGVNLGGLVNDASG
                     NPDLKTATIKPEQVNHFEIGVKTTPTKNSTLNLTVFNTDIKDYQTLVQSPDITQNRGY
                     LANAEKVNVRGAELDGDIRINNNFSFYGSVTYTDGKYVSFKNAPLPLEETGSKDANGV
                     SYYAKDASGGALPGISKWAGSIGGEYSNEGKLFSKPGRFYIASDASGRSSFSSSPTPS
                     KYLNIQGYGLLNARIGFRATDGVSITAWGRNILDKDYFEQLLPGAGNAGHYAAVLGDP
                     RTYGVTIKYAF"
     gene            complement(3563..4270)
                     /locus_tag="VI413_08710"
     CDS             complement(3563..4270)
                     /locus_tag="VI413_08710"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6914744.1"
                     /translation="MTFALEITEFENKRFMDDATFIIAENNDLCRLGLKCVIHDQVQS
                     VSIHFVSTKLELHSTLLSNSDAVVIIDFDSLAINTIDEITVLSACFPQSNWLFIADIP
                     DETFLMPLTASFGKANFILKTNDYDVIATAILATVSGKKYYCSEALQIIMDGHNRKKE
                     NSLKRNLLTSTELELVQLFTQGKTAKEIAEMRCLSHHTINTHRKNIFRKLNLNNIQEL
                     IKFALKNGLVDLTEYYI"
     gene            complement(4439..4990)
                     /locus_tag="VI413_08715"
     CDS             complement(4439..4990)
                     /locus_tag="VI413_08715"
                     /inference="COORDINATES: protein motif:HMM:NF019614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HEY6914745.1"
                     /translation="MIYVALLRGINVGGNNKVEMKKLKTTFELLGFTNVVTYINSGNI
                     VFEDMLQEQAVIVTEIEKAIKKDFQLEIKVLVRDFENIDAICKELPATWTKNESMRTD
                     VLFLWEKYDRPDIMGQLQINPVDNVKYLPGAVLWNIEDKNYSKSGMLKLMGTAIYKNM
                     TIRNVNTVRKLHQIMASIHGQKQ"
     gene            complement(5047..5517)
                     /locus_tag="VI413_08720"
     CDS             complement(5047..5517)
                     /locus_tag="VI413_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEY6914746.1"
                     /translation="MNKEHFYKLTVQWTGNTGNGTLNYRTYERNHTISADNKETIIAS
                     ADPAFRGDKTKYNPEELLLASLSSCHMLWFLHLCSDNGVIVTDYTDNPTGIMEETDNG
                     GGKFKEVTLNPIVTVTDLSSLDKLDDLHKKANELCFIANSVNFIVKHNPTGKTI"
BASE COUNT         1593 a         1168 c         1097 g         1764 t
ORIGIN      
        1 ctgcaaaatt acggcaaagc tcacatgccc accataccac tggagtggta tatttgtacc
       61 atatgtgtgg tataaaatgt agactgatac ttaattcaca tgatttatgc gaattaaggg
      121 ttgaaataat gtttcattac cgcgaaagcc ctgaaagggt ttcatttgaa taaccgtggg
      181 tgtagcccac gggtgaaaag atcctacaac accagccccg aaggtggctg aacatagggg
      241 tgttttattc aaccacttcg tggctgtctg ctttttttat taattccgtg ggcttcaccc
      301 acggttattc aaattaagcc acttcgtggc aattgtataa aaccagacac gggtttcact
      361 aactcagtga aacccgtgtc tggtttaaaa tccggtatct gttgaaactt agaaagcgta
      421 tttaatcgtt acaccataag tccttgggtc gccaagcaca gctgcataat gtccggcatt
      481 tccggcaccc ggaagcaatt gctcaaaata gtctttatca aggatgttac gtccccaggc
      541 ggtaatcgaa acgccatccg ttgcacggaa tccgatacgt gcattcagca aaccatatcc
      601 ctgaatattc aggtatttag atggggtagg acttgatgag aaggaagacc ggcctgaagc
      661 atccgaagct atgtagaaac gacccggctt agagaataat ttaccttcgt tggaatactc
      721 accaccaata cttccagccc attttgagat ccccggtaat gctccgcctg aagcatcttt
      781 agcgtaatac gatactccat tagcatcttt agaacctgtt tcttcgagtg ggagtggagc
      841 gtttttgaac gatacatatt ttccatcggt atatgttact gaaccataga acgagaaatt
      901 attgtttatt ctgatatcac catccaattc ggctccacgc acatttactt tttcggcatt
      961 tgccaaatag cctcgatttt gggttatgtc aggcgattgt acgagggttt gatagtcttt
     1021 tatatctgta ttgaaaacgg ttaagttcaa tgttgaattc ttggtcggag ttgtttttac
     1081 accgatttca aagtgattaa cctgttcagg tttaatggtg gctgtcttca aatccgggtt
     1141 cccgcttgca tcattcacca atccacctaa attaactcca acaggcttat agcttttggc
     1201 gtaggttgca aatgcattta ttttccgtcc aactttgtat gcaactgtca actggcctga
     1261 gtagtttgta tttgaagtgt cggcaataaa tgcctgattg ctatatactc cttttaaaag
     1321 tttgagttga gctgctgtag gatttgcaat gccaccataa gtttcacgtt tatagtctac
     1381 ttttttctga tcgtaattgg cacgaattcc cggtaaaaca tgcaatttat cggtaattgc
     1441 ccagtcaact tgtccgaaca gggcaccact aaaggtattc aacagtgatg ttgtatggat
     1501 gccgtatcca tcgaaaagtc ccggtgttgc ccacagtgca tcctgatcaa ctccgcccac
     1561 aactccggtt gtattttttg caaaacgcca ttgatctttt ccagattctt cggtgtgata
     1621 aggatcggtg cgaaggtcct ggccaatggc gaacaaacca aacactccgg ttacttttga
     1681 ccctaacgaa ccagcccaac gcacttcctg cgaccattgt ttgtgtttcg aagtagcttg
     1741 tgataaagca agtgcctgca agccggtgaa gtcacggtcg ttggatggat cccagttcca
     1801 atagcgccag gccaaagtgg aagtaagtgt tcctgtacca acttttgtgt cgatgttcaa
     1861 tgaaacacca cctaaatcct gatttgaacg ccagggagta tcctgatcaa tcaaacggtc
     1921 gaatggattt gtgctcggaa gtgaatatcc caaatcggca atgatattat tgaattggcg
     1981 ataagcagca cgttttgtag ttacaacacc tgctaccact tgtgcatacc cattcgggcg
     2041 ttgacgggta gcatcggcag ctaaaatagc ggtagtatta tccgacagct tgaaaagcaa
     2101 ctggccacgt acccccaggt tattcaagtc gttcactttt tgttgtgtaa gcacgttggt
     2161 cagcaaacca tcgcgttgtg ttcccgaaaa cgaaacacgg gcagcaatgt tttttgtaat
     2221 aggaccggtt atcgaagtct tagcctgaat gtaaccatag tttccatagc tcaattcaaa
     2281 attagctccg ggagtaaaac ttggtttttt ggtggtaatg ttgaatgcac ctgctgtagt
     2341 atttttgcca aacaaggtgc cctgtggtcc gcgcagaact tcaatttgtt ccacatcgat
     2401 aaagtcgagt gttgttgccg caggacgagc aaaataaacg ccatctacat aaaaaccaac
     2461 accgggatcg ataccatcat tggtaaggcc aaaagacgaa ccaagcccac ggatatttag
     2521 ccccgtgtta cgtggatttg atgaatagag ttgaactgaa ggtactaact ctttaatgcg
     2581 attaacatta aatgcacctg tttcggtaac caaagcacca ccaattaccg agattggaat
     2641 tggaatgttc tgagcagtct ccgaacggcg acgggatgtt acaacgactt tgcttaacag
     2701 gtttgtgctc tggcgaattt caaatacaaa gtcaccatcc acactctcga taatattttc
     2761 ttgtttttgg tagccaacgt aattcacaac aatagtgaat ggaagttttt tagttgtttt
     2821 tagattgaaa ctaccattta tatctgtttt tacggcatct ttagtgcctt caacctgtac
     2881 ggtaacacct accagcgttt caccggtagc accgtctttt acatgcccgg tgagttgagt
     2941 ctggttgttt tgggcaaatg acgtaaggcc aaatgcgagg gaaaggagta atgcataaat
     3001 cttgaatctc ataattgaat agtttaatct tgtttgtata ccttatcaaa ttttatgagt
     3061 gcaaaattac cgtgcatttg aaagcaataa aataccgcaa ttggagtata ttgataccta
     3121 aatctgggca taattcaatt taactgcttg atatgctgaa atataaaatg ttgttgacaa
     3181 ataaaaacaa tatgattatc cgcataatga cctaacctca tatggggctt cgccccaaac
     3241 cccacttact tttttgcctt gatgcaaaaa agtaagcaaa aaagatcaag actgtgccca
     3301 tttcactcga aaaacctacg ctcggcaggc tcaaatcgtc caaactcgcc cgtcgaaata
     3361 cgccgggact caaacaggac gatttttaac cgcctaactc acttgttttt cggttcaccg
     3421 ggcaaggtcg gtcgctcaag agacttagat gatttaaaag gtagctttgc ggataatcat
     3481 taaatagaaa aagaggctgt aaaatatcaa tgtctttata cgacaaagta ttttacatcc
     3541 tctttagagg cttatgttat tcttaaatat aatattcggt cagatcaacc aatccgtttt
     3601 tcaaggcgaa tttaatcagt tcctgtatat tgttgaggtt taattttcgg aagatatttt
     3661 tgcggtgtgt attgatggta tgatggctca ggcagcgcat ttcggctatt tcttttgccg
     3721 ttttgccctg tgtaaagagt tgtacaagtt ccagttcggt ggatgtcagc aaattccgtt
     3781 tcaatgaatt ttcctttttg cggttgtgcc catccataat tatctgcaaa gcttcgctgc
     3841 aatagtattt cttccccgaa actgtagcca gaatagccgt tgcaatgaca tcgtagtcat
     3901 ttgttttcag aataaaatta gctttaccaa acgaggctgt cagtggcatt aaaaaagttt
     3961 catcgggaat gtcggctata aaaagccagt tagactgcgg gaaacacgcc gaaagcacag
     4021 ttatttcgtc aatagtatta attgccaggc tgtcaaaatc aataatgaca acagcatcac
     4081 tgttcgacag caacgtacta tgcaattcaa gtttcgttga aacgaaatgg attgacaccg
     4141 actgaacctg atcatgaatg acgcacttca agcccaaacg acacaagtcg ttattctcag
     4201 caataataaa agtagcatca tccataaatc gtttgttttc aaattcagtt atttcaagtg
     4261 caaaggtcat actattttta agtatacaaa atcccccaat cacagtattt atataccata
     4321 attgggggat attttgttta aggggaacgg atttttattt ctacaccttt attctatttt
     4381 ttatattatt cctatacgtt aggcttcaat gcatattaga tttattttta caacaatatc
     4441 attgtttttg cccgtggatg ctggccataa tttgatgtag tttccgaaca gtatttacat
     4501 ttctaattgt catattcttg tatattgctg ttcccataag ctttagcata ccgcttttgc
     4561 tgtaattttt atcttctata ttccacaaaa ctgcacctgg cagatatttt acattatcaa
     4621 caggattaat ttgtaactgg cccataatat caggcctgtc atatttctcc cacagaaaca
     4681 ggacatcggt tcgcatcgac tcattctttg tccacgtggc aggcagttct ttgcaaatag
     4741 catcgatatt ctcaaaatcc cggaccagaa cttttatttc cagctgaaag tcttttttta
     4801 tcgctttctc tatttcagtt acaatgacag cctgttcttg caacatatct tcaaaaacga
     4861 tgttcccgga attgatatag gtaacaacat ttgtaaaccc aagcaattca aaagtggttt
     4921 ttagtttttt catctccact ttattgttgc caccaacatt tattcctctt aaaagcgcga
     4981 cgtaaatcat aatttaaata tttagcgtga gtgaataaaa ttactttcgt tacttgcttc
     5041 gttatttcaa atcgttttac ctgttgggtt atgtttcaca ataaaattta ccgagttggc
     5101 tataaaacaa agttcatttg cttttttatg taaatcgtca agtttgtcca gagagcttaa
     5161 atcggtgact gtcactattg gattcaatgt cacttctttg aattttcctc ctccattatc
     5221 agtttcttcc attattcccg tggggttgtc ggtataatca gtaacaatca caccattgtc
     5281 ggaacacaaa tgtaagaacc acagcatgtg gcaacttgac aaagacgcaa ggagaagttc
     5341 ttccggatta tatttcgttt tgtcaccacg aaaagccggg tcggcagaag caataatagt
     5401 ttctttgttg tcggccgaaa tagtatgatt tctctcgtag gtacgatagt ttaatgttcc
     5461 gtttcctgtg tttccagtcc actgaacggt cagtttgtaa aaatgttctt tattcatttt
     5521 ttagtattgt aagaggaata gctgtggatt tatctaccaa tttttcataa catatagaat
     5581 tctgccgaac atgtgcgtaa ccaaagctac accaaactaa ta
//
LOCUS       DATDNM010000513         3930 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1027806, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000513 DATDNM010000000
VERSION     DATDNM010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3930
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1027806"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1844)
                     /locus_tag="VI413_08725"
     CDS             complement(<1..1844)
                     /locus_tag="VI413_08725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009000891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEY6914747.1"
                     /translation="MKLRKELEHRILVLDGAMGTMIQRHKLTEADYRGERFAQWPSLV
                     KGNNDLLVLTQPEIIKSIHAAYLDAGADIIETNTFNAQVISMEDYGMGELVREINLAG
                     AKLARQAADEYTAKNPAKPRFVAGAVGPTNKTASMSPDVNNPAFRAVSFDDLVAAYKE
                     QILALIEGGVDALLIETIFDTLNAKAAIFAAEEAMAELGKRVEIMLSATVADKSGRTL
                     SGQTIRAFLASIGHANLLSIGLNCSFGAKDLKPYLQEINAHSPWFVSAYPNAGLPNQF
                     GEYDESPEIMAVQVKEYFDEKLINIIGGCCGTSPDHIAAYQELIKGAEVRTKRAPSTK
                     LELSGLEEIEIEDSSLFVNIGERCNVAGSKAFLRLINEKKYEEALSIARKQVEDGAQI
                     IDVNMDDAMLESKEEMVTFLHYLSSEPEISRIPIMIDSSKWEVIEAGLKCIQGKCIVN
                     SISMKEGEEDFLAKARKIRAYGAAVIVMAFDEKGQADSFERKVQICTRAYYLLVDKVG
                     FPPQDIIFDPNVLAIATGIEEHNNYGVDFINATRWIKQNLPYAKVSGGVSNLSFSFRG
                     NNVVREAIHSVFLYYAIKEGMDMGIVNAGMLQIYQDIEPELLEHVEDIV"
     gene            complement(1991..3511)
                     /gene="gpmI"
                     /locus_tag="VI413_08730"
     CDS             complement(1991..3511)
                     /gene="gpmI"
                     /locus_tag="VI413_08730"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011966935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEY6914748.1"
                     /translation="MSKKALLMILDGWGIGNHTLADVIYSTPTPYWDSLIANYPNSQL
                     LASGEDVGLPEGQMGNSEVGHLNIGAGRVVYQDLVKINIACRDNSIMQNPEIIRAYTY
                     AHVNKKKIHFLGLVSDGGVHSSLDHLLKLIDIAKEYNAEAFVHCFMDGRDTDPRSGKG
                     FIEQLDSYTKTSTTKIASIIGRYYAMDRDKRWDRVKKSYDLMVNGIGETTTDVVAAMQ
                     ASYDAGVTDEFVNPIIAVDEAGKPLATIEAGDVVIFFNYRNDRAKELTVVLTQKDMPE
                     EGMHTIPLEYYCMTPYDSSYKGLHVMFDKDNVQNTLGEYVSSLGLKQLRIAETEKFAH
                     VTFFFSGGRESEFDGEERILVPSPKVATYDLQPEMSAPEVADKLVAALNTQKFDFVAL
                     NFANGDMVGHTGVYEAIVKAVETIDKCVSEVVEAAKANGYEVIIIADHGNADNAVNAD
                     GSPNTAHSLNPVPFIYVTENKNAKVENGKLADVAPSICQILGIPQPKEMTGKGLIK"
     gene            3722..>3930
                     /locus_tag="VI413_08735"
     CDS             3722..>3930
                     /locus_tag="VI413_08735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015661 - L-lysine efflux transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903401 - L-lysine transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysO family transporter"
                     /protein_id="HEY6914749.1"
                     /translation="MFVVLSCMIAGIAVGYLLRRWKIRFIHGLILTLIWLLLFLLGLE
                     VGANETVVRQFGKLGFEAFLLATGGT"
BASE COUNT         1034 a          846 c          780 g         1270 t
ORIGIN      
        1 acaatatctt ccacatgttc caacagttca ggttcaatgt cctggtaaat ctgcaacata
       61 ccggcattca cgatgcccat gtccatgcct tctttgatgg cataatacaa aaacaccgag
      121 tggattgctt cgcgaactac attatttccg cggaacgaga acgaaagatt gctgacacca
      181 ccgctgactt tggcatatgg caggttttgc ttaatccagc gcgtcgcatt gataaagtca
      241 acaccgtagt tgttatgttc ttcaattccg gtggcaatag ccaacacgtt tggatcaaaa
      301 atgatgtctt gtggtggaaa tccaactttg tcaactaata aataataggc acgggtacag
      361 atttgtactt tgcgctcgaa actgtcggcc tggccttttt catcaaaagc cataacaata
      421 acagctgcgc cataagcacg aattttgcgg gcttttgcca ggaaatcttc ttcgccttct
      481 ttcatgctga tagaattgac gatgcatttt ccctgtatgc atttcagtcc ggcctcaatc
      541 acttcccatt tcgaagagtc aatcataatt gggatgcgcg aaatttccgg ctcagatgac
      601 aggtagtgaa gaaaagtaac catttcttct ttcgattcca acatggcatc atccatattg
      661 acatcgataa tttgagcgcc atcttccact tgtttgcggg caatgctgag tgcttcttcg
      721 tattttttct cgttaatcaa ccgcaagaaa gctttcgaac ctgccacatt acagcgttcg
      781 cctatattta caaataagga tgaatcttcg atttcaattt cttcaagccc ggataattcc
      841 aattttgttg agggcgctct tttagttctt acttccgctc ctttgatcaa ttcctgataa
      901 gctgcaatat ggtcgggtga agttccgcaa caaccaccga taatattaat cagtttttcg
      961 tcgaaatatt cttttacctg aacggccatt atttccggtg attcgtcgta ctcaccaaat
     1021 tgatttggca agccggcatt tggataggca cttacaaacc agggtgaatg agcatttatt
     1081 tcctgtaaat atggttttag atctttagcg ccaaatgagc agtttaagcc gattgacagt
     1141 aaattagcat gaccgataga tgccaaaaat gcccggattg tttgccctga caaagtacgg
     1201 ccgcttttgt cggccaccgt tgcagaaagc ataatttcaa cacgtttccc gagttctgcc
     1261 atagcttctt ctgcagcaaa tatggctgct ttagcattaa gcgtatcgaa aatagtttcg
     1321 atcaacaaag catcaacacc accttcaatc aatgccagaa tttgctcttt gtatgcagcc
     1381 accaaatcat caaaactcac agcacggaat gccggattgt ttacgtcggg tgacatggag
     1441 gctgttttgt tggttggacc tacggctccg gctacaaaac gtggtttggc aggattcttt
     1501 gctgtatatt catcggcagc ctggcgtgca agctttgcac cggccagatt tatttcgcgt
     1561 accagttcgc ccattccata gtcttccatg gaaattacct gtgcattaaa cgtatttgtt
     1621 tcaataatgt ctgcacccgc atcaaggtat gccgcgtgga ttgattttat aatttccggt
     1681 tgggtcaata ccaataagtc attatttcct ttcacaaggc ttggccattg tgcaaaccgc
     1741 tcgccgcgat aatcagcttc ggtgagtttg tgtcgctgta tcattgttcc catcgcgccg
     1801 tcgaggacta atatgcgatg ttcaagttct tttcttagtt tcatgttttt aagcgtttaa
     1861 agtgcaaaga taatgctaat cagtagataa ttgattgttg acagttcata attaaaggat
     1921 ttattgaaac aaaaagcgct gaaaagtaaa ctttcagcgc ttttaattcc cctttagggg
     1981 ttaggggttc ttatttaatc agtccttttc cggtcatttc ttttggttgt ggaattccca
     2041 aaatctgaca aatagaagga gcaacatcgg ccagtttgcc attttctact ttagcgtttt
     2101 tgttctcggt cacataaata aatggaaccg gattcaatga gtgtgcagtg tttggcgaac
     2161 catctgcatt tacggcgttg tcggcattac catggtcggc aatgataatc acttcgtaac
     2221 catttgcttt ggctgcttct actacttcgc ttacacattt gtcaatcgtt tccactgctt
     2281 ttacaatggc ttcgtaaaca ccggtgtggc ctaccatatc gccattggca aagttcaatg
     2341 ccacaaaatc aaatttctga gtgttcaatg cagcaactaa tttgtcagcc acttcaggag
     2401 cgctcatttc cggctgtaaa tcgtaagtag ccacttttgg ggaaggaacc aaaatacgtt
     2461 cttcgccatc aaattcactt tcgcgaccgc ctgagaagaa gaacgttacg tgagcaaatt
     2521 tttcagtttc ggcaatacgc aattgtttta atccaaggct tgaaacgtat tcgcccaatg
     2581 tgttttgtac gttgtctttg tcgaacataa cgtgcaatcc tttgtagctt gaatcgtaag
     2641 gagtcataca ataatattcc aatggaatag tgtgcattcc ttcttcgggc atatcttttt
     2701 gagtcaatac tacggttaac tcttttgcac ggtcgttgcg gtagttgaag aaaattacca
     2761 cgtcgccggc ttcgatagtt gccaatggtt ttccagcttc atcaactgct attattggat
     2821 ttacgaattc atcggttaca cctgcatcgt acgaagcctg catagctgct accacgtcgg
     2881 tagtagtttc accaataccg tttaccatta aatcgtacga tttttttacg cgatcccaac
     2941 gtttgtcacg atccatggcg tagtaacggc caataataga ggcaatttta gtggtagagg
     3001 ttttcgtgta ggaatctaat tgttcaataa agcctttccc actgcgtggg tccgtgtcgc
     3061 gtccatccat aaagcaatga acaaaagctt cagcgttata ttctttggca atgtcgatca
     3121 atttcagcaa gtggtccaac gagctatgaa caccaccatc agaaaccaat cctaagaaat
     3181 ggattttctt tttgtttaca tgtgcatatg tatatgctct aattatttca gggttttgca
     3241 tgatgctgtt gtcgcgacaa gcgatgttga tttttaccag atcctgataa acaacacgtc
     3301 cggcaccgat attcaggtga cccacttcgg agttacccat ttgtccttca ggaagaccaa
     3361 catcttcgcc cgaagctaat agttgcgagt ttggatagtt tgcaatcaac gaatcccaat
     3421 aaggagttgg agtgctgtaa attacatcgg caagggtgtg gtttccaatt ccccaaccat
     3481 ctaaaatcat taataatgct tttttgctca taatattttg aattttataa tttttatacg
     3541 ataactaata ccttctgttt tcggggtgca aaattactta tttttttgca cattttcaat
     3601 ctgttattac caataaatca gcaaatactg tgaaattcaa caaatcctgt ttttttgaaa
     3661 tctaaagatt atctttgtgc gtcattaaat gtatattttt tcatttttac actaaaaata
     3721 aatgtttgtt gttctctctt gtatgattgc cggaatagct gttggctatc ttttacgacg
     3781 ctggaaaatc cggtttattc acggattaat tctaacgctt atctggttgt tattgttttt
     3841 gttggggttg gaagttggtg ccaatgaaac ggttgtacgt caatttggaa aactcgggtt
     3901 tgaagctttt ttattagcta ccggcggcac
//
LOCUS       DATDNM010000514         5374 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1882170, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000514 DATDNM010000000
VERSION     DATDNM010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5374
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1882170"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..888
                     /gene="ricT"
                     /locus_tag="VI413_08740"
     CDS             <1..888
                     /gene="ricT"
                     /locus_tag="VI413_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory iron-sulfur-containing complex
                     subunit RicT"
                     /protein_id="HEY6914750.1"
                     /translation="FQEAKGKEQETMIKARQIAEGLKLNMKIGDVEFQGDGNKAIFYY
                     IADERVDFRQLIKVFAETFRIRIEMKQIGARQEAGRIGGIGPCGRELCCAGWMTNFNS
                     VSTSAARIQDISLNPQKLAGQCGKLKCCMNYELDSYTDASKNFPSKEIPLETLDNTYY
                     HFKTDVFKGQMAYSTSPNFGANLVTISSKRAKEVIALNRKGTKPDMLDDHSEDEAKPV
                     VVDYENGVGQDSLTRFDTNKKRPNNNKNKRPNNNNRPQQSARPAQPENKAPQENKGNA
                     PRFQKPIKKNNNGNENNEK"
     gene            878..1342
                     /locus_tag="VI413_08745"
     CDS             878..1342
                     /locus_tag="VI413_08745"
                     /inference="COORDINATES: protein motif:HMM:TIGR03511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility lipoprotein GldH"
                     /protein_id="HEY6914751.1"
                     /translation="MKNRFLQAIFISLLLVGCTGNDVYFQYNPVAVNGWSKDTAYVFN
                     VPVSDTAATYNIYVNVRNRGEYPYQNLWLFLKKITPDTIQSKDSIECYLADQRGKWLG
                     SGMGSIMEMPVLYQQNVRFNKAGTYRYEIVQGMRDSMLVGINDIGMRVEKVK"
     gene            1461..2219
                     /gene="trmB"
                     /locus_tag="VI413_08750"
     CDS             1461..2219
                     /gene="trmB"
                     /locus_tag="VI413_08750"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007764333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEY6914752.1"
                     /translation="MGKNKLAKFADMEEFPHVFQVSSHAVREGQTFDMKGKWNELFFK
                     NDNPIVLELGCGKGEYTVGLGRLYPDKNFVGVDIKGARIWSGAKESFQSGMTNVAFLR
                     TNIEMIYHFFSENEVSEIWLTFPDPQMKKVTKRLTATNFMKSYQQFLKPDGLIHLKTD
                     SNFMFTYTCEMVKANLFPVVFSNDDLYASDLKDPILGIKTYYEQQWLERGLTIKYIQF
                     RLQKRDQFVEPDVEIEHDPYRSFGRSKRHNMDND"
     gene            2309..3415
                     /locus_tag="VI413_08755"
     CDS             2309..3415
                     /locus_tag="VI413_08755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008770247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEY6914753.1"
                     /translation="MTITAKIILDALVHVRYPGNGKDIVSSGMVQDNIRIEGNKVSFS
                     LFFEKHNDPFAKSVVKAAEQAIITYVGEQVEIKGNIEIVSKEAPAPKPASILPNVKNI
                     IAVSSGKGGVGKSTISSNLAIALASLGYKVGLLDADIHGPSIPKMFGVEDAHPEVVEV
                     EGRQTILPIEKYGVKILSIGFFVDPSQALVWRGAVSSNALKQLISDADWGELDFFVMD
                     LPPGTGDIHLTLVQTMGITGAIVVTTPQEVALADARKGVHMFMGEKVNVPVLGIIENM
                     AWFTPAELPENKYYIFGKEGGKRLAEELDVPLLGQIPLVQSIREGGDAGRPIAFNNDS
                     ILSLAFTELAHNVVDRVNYRNENMAATKKVEMVK"
     gene            3723..5159
                     /locus_tag="VI413_08760"
     CDS             3723..5159
                     /locus_tag="VI413_08760"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEY6914754.1"
                     /translation="MKQLLLFVFTFSFCLTVFPQSKGFSRWSFAPEYGYNLFNGDINQ
                     NLFNIVPASLNDITFGATVECALTPVWGLSVDGYYLPLRAKNSTPVGMFINSNLYTSD
                     LNATVNFTRWIFPQSKSKIYFNGSVGIGCAYYTYGLKYLDGTAIKATDSYFDAKYSMF
                     RPVMLLDASAAPVKSGLAVSVPVTFSLEYNFSKPVSVGAKFHYRAYAKDDLEGATPLN
                     SNGVTNDYVVAGTLFLRYKFCAVKKDHLRNVTMEEYAPDKGLLLAKELEGKLNKLTAR
                     VDTIGNKVDSLMPRVARLENMLSTDGPDADGDGVPDVRDKDMNTPANTPVDFWGKTFI
                     VNNYSTAGSNNTPLGASYSNDATGNKPAGTRKAIYIPDDVPAVYFDFDQIDLDDAALI
                     TISKIASKMKADPTLYVEVRGYCDYSGNNPYNNLLSQRRSDRVKAELMKVWGIPFDHI
                     ISNGKGKVIEPRTKYKPNRRCDFFFGRL"
BASE COUNT         1596 a         1010 c         1227 g         1541 t
ORIGIN      
        1 ttccaggaag ccaagggcaa ggagcaggaa acgatgatca aggcccgtca gattgccgaa
       61 ggcctgaaac tgaatatgaa aatcggcgat gtggaattcc agggcgatgg caataaagct
      121 attttctatt atattgccga tgaacgtgtt gacttccgcc agctgattaa ggtttttgca
      181 gaaacgttcc gcattcgtat tgaaatgaag caaatcggag cacgccagga agcgggccgt
      241 attggtggta tcggaccatg tggtcgtgaa ttgtgttgtg ccggctggat gactaacttt
      301 aattctgttt caacgagtgc cgcgcgcatt caggatatct cgctgaatcc gcaaaagctt
      361 gccggacagt gtggtaagct gaaatgttgc atgaactacg agctggattc gtacacggat
      421 gcttccaaga atttcccttc gaaagagatt ccgcttgaaa cgcttgataa cacttactat
      481 cacttcaaaa ctgatgtttt caaaggacag atggcgtatt ctacttcacc aaatttcggg
      541 gctaacctgg tgactatttc ttcaaaacgt gccaaagaag ttattgccct gaaccgtaaa
      601 ggtacgaagc cggatatgct tgatgatcat tcggaagatg aagctaaacc ggtagtggtg
      661 gattatgaaa atggagtagg gcaggacagt ttgacccgtt tcgataccaa taaaaagcgt
      721 ccgaataata ataaaaacaa gcgtccgaat aataacaacc gcccgcaaca atcggcaagg
      781 ccggcgcaac cggagaataa ggcgccgcaa gagaataaag gaaatgcgcc aagattccag
      841 aaaccaatta aaaagaataa taacggcaac gaaaacaatg aaaaatagat ttctacaggc
      901 gattttcatt tcgctgcttc tggttggctg tacaggaaac gacgtttatt tccagtataa
      961 tccggtggcg gtaaatggct ggagtaaaga tacagcgtac gtattcaatg ttccggtttc
     1021 ggatacggca gctacctata acatatatgt aaatgtccgg aacagaggtg aatatccata
     1081 tcagaacctg tggcttttcc tgaagaaaat aacaccggat acgattcaat cgaaagattc
     1141 gattgagtgt tatctggcag accagcgtgg gaaatggctt ggaagcggta tgggttccat
     1201 catggaaatg cctgtgttgt accaacaaaa tgtccggttc aataaagcag gaacataccg
     1261 ttatgaaatt gttcagggca tgcgcgactc catgctggtt ggtatcaatg atatcggcat
     1321 gcgggtcgag aaagtcaaat aggagttggc agtttatagt agatagttta tagagaaaaa
     1381 gactcagtgt cataaaagac tatgtgatta taaaaactcc aattgtaaat ggtaaataac
     1441 taaatcgtaa ataattaaaa gtgggtaaga ataaattggc aaagtttgcc gatatggaag
     1501 agtttccgca tgtttttcag gtgtcgtcgc atgccgttcg cgaagggcag actttcgata
     1561 tgaagggaaa atggaacgaa ctttttttta aaaatgataa tccgattgtc cttgagttgg
     1621 gttgtggcaa aggcgaatat acggttggat taggccggct ttatccggac aaaaactttg
     1681 taggtgttga tatcaaggga gcacggattt ggtcgggagc taaagaatcg ttccaaagcg
     1741 gcatgacaaa tgtggctttc ctgcgtacca atatcgaaat gatctatcat tttttttctg
     1801 aaaacgaagt aagtgaaatc tggcttactt tccccgatcc gcaaatgaaa aaggtcacca
     1861 agcggctcac tgccactaac tttatgaaat cgtaccaaca gttcctgaaa cctgacggac
     1921 tgatacacct gaagaccgac agtaatttca tgtttaccta cacctgcgaa atggtgaaag
     1981 ccaacctgtt tcccgtggtt ttctcgaacg atgatttgta tgcttccgac ctgaaagatc
     2041 ctattttggg aattaaaact tattatgagc aacagtggct cgaacgtgga ctgactatta
     2101 aatacattca gttccggctt cagaaacgag accaattcgt tgaacctgat gttgaaattg
     2161 aacacgaccc gtatcgcagt ttcggccgaa gcaagcgcca taacatggat aatgattagc
     2221 aacgaatgat taacgccttt gattaaacat ttcagaggtg aggcttgtta ctttaattcc
     2281 aaactctcaa tttttaaact aactaaaaat gacaattaca gcaaaaataa ttctcgatgc
     2341 acttgttcat gtgcgttatc ccggaaacgg aaaagatatt gtttcgtcgg gaatggtgca
     2401 ggataatatc cgcatcgaag gaaataaagt ttcgttttcc ctgttttttg aaaaacataa
     2461 cgatccgttt gcaaaatcgg tagtgaaagc agccgaacag gctattatta cctatgtagg
     2521 cgagcaggtt gaaattaaag gaaatatcga aattgtaagc aaagaagcac ctgctcctaa
     2581 gccggcatca attctgccta atgtaaagaa tattatcgcg gtttcttccg gaaaaggtgg
     2641 tgtgggcaag tctaccattt cgtctaacct ggccattgcg cttgcttcgc ttggctacaa
     2701 ggtaggtttg ctggatgctg atattcatgg cccttcaatt ccgaagatgt ttggtgtgga
     2761 agatgcccat cctgaagtgg tagaggtgga aggccgccag actattttgc ctattgaaaa
     2821 atacggcgtg aaaatattgt ctatcggttt ttttgtcgat ccatcacagg ctttggtatg
     2881 gcgtggggca gtttcgagca atgccttgaa acagcttatt tccgatgccg attggggtga
     2941 acttgatttc tttgtaatgg atttgccacc gggtaccggc gatatacacc tgacactggt
     3001 tcaaactatg ggtattacag gggccattgt tgtaaccact ccgcaggaag tagctctggc
     3061 tgacgcccgt aaaggtgtgc atatgtttat gggcgaaaag gtaaatgttc ctgtattggg
     3121 aattatcgaa aatatggcct ggtttactcc ggctgaattg cccgaaaaca aatattacat
     3181 tttcggaaaa gagggtggaa aacgcctggc tgaagaattg gatgtaccgc ttttaggaca
     3241 aattccgttg gttcaaagca ttcgcgaagg tggagatgca ggtcggccga ttgcattcaa
     3301 taacgattcc attctttcgt tggcatttac cgaactggct cataatgttg tggatagagt
     3361 aaattaccgt aatgaaaaca tggctgctac taaaaaagta gaaatggtca agtaagaaag
     3421 tttcaagtaa tttaaaggtt taggtatgag gcttctggcg gcaatttccg cagttgttat
     3481 gactgagtcc gattgaagtt ttcaacatac tgtttctttt tttgatttta tattttaatg
     3541 taaaatgatt gattataaga ggtgtatgcg tatggcttac acctcttgta ataaaatgta
     3601 atatttgctg taattaatca aatcacaata aatcaaatat attcttaact ttgacaatta
     3661 ttattaaata cttcaggagt gttaacgctt tagtattata ggagtttaat ctttcctgcc
     3721 tcatgaaaca acttttgtta tttgttttta cattctcttt ttgtcttaca gttttcccgc
     3781 aaagtaaagg cttttcgaga tggtcttttg cccccgaata tggttacaat cttttcaatg
     3841 gtgatatcaa ccagaattta ttcaatattg ttcctgcctc attaaacgat attacgtttg
     3901 gtgctacagt tgagtgtgcc ctgacaccag tctggggttt gtctgtggat ggttattatt
     3961 taccgttacg tgcaaaaaac agcacccccg ttggcatgtt tataaactca aatctataca
     4021 cctccgattt gaatgccacc gtaaatttca cccggtggat cttcccgcag tctaaatcaa
     4081 aaatttattt taatggctct gtcgggatcg gctgtgctta ttatacatat gggttgaagt
     4141 acctcgacgg aacagcaata aaagccactg attcttactt tgatgccaaa tatagcatgt
     4201 tcaggccggt tatgttactt gatgcttcag cagctccggt aaaatcaggt ttggcggttt
     4261 ctgttcctgt aacattctcg ttagaatata atttttcaaa accggtttct gtcggtgcaa
     4321 agtttcatta cagggcttat gcaaaagatg atctggaagg tgccaccccg ttgaattcaa
     4381 acggagttac caacgattat gtagtggcgg gcactttgtt tttgcgctat aagttctgtg
     4441 ctgtcaaaaa agatcatttg cggaatgtaa caatggaaga atatgctccg gataaaggtc
     4501 tgttgctggc taaagagctg gaaggcaaac tgaataaact gacggcccgg gtggatacta
     4561 tcggtaacaa agtagatagc ctgatgccga gagtggcgcg gttggaaaat atgttgtcga
     4621 ccgatggacc tgatgctgat ggtgatggag tgcctgacgt gagggataag gatatgaata
     4681 cgccggctaa cacgcctgtg gatttttggg gtaaaacgtt tattgtaaat aattattcta
     4741 ctgcgggttc aaataatacc cctttaggtg caagttactc aaacgatgca accggaaata
     4801 aacctgcagg aacacgcaag gctatttata ttccggatga tgtacctgcg gtttattttg
     4861 atttcgacca gatcgatctg gatgatgcag cattgattac cataagtaag atagcctcta
     4921 aaatgaaagc tgatccgact ttatatgttg aggtccgcgg atattgcgat tactccggaa
     4981 ataatccata taataacttg ctgagccagc gtcgctcgga ccgtgtaaaa gccgagttga
     5041 tgaaagtatg gggcattcct ttcgatcata ttatttccaa cggaaaagga aaagtgattg
     5101 agccacgcac caaatacaag ccaaaccgcc ggtgcgattt cttcttcgga agattataaa
     5161 ccgaaattaa gttataatca caaagcccgc tttttagtgg gctttgttgt aataataaat
     5221 ctccttttta aaaaaataaa ttatctttat cccgacattc tttacttctt gattttcttt
     5281 gaagcaggaa gtccaaacat aaaacacaat acatgagaac aaccattatt gatttgctga
     5341 accagagcgt tgaaacctat gccagtaatc cgtt
//
LOCUS       DATDNM010000515         3149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1455998, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000515 DATDNM010000000
VERSION     DATDNM010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1455998"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1518
                     /locus_tag="VI413_08765"
     CDS             <1..1518
                     /locus_tag="VI413_08765"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HEY6914755.1"
                     /translation="EMTNFRQTNKIVDVNSHTSELLGKSSKFDAQQSELKLKETYLDY
                     LTKYLKTNMTDGEIIAPGSLGITDPMLMAAVQQINDLYSQRSEVTEKNLYYAKYTKQI
                     ENAKLTVLEVVKNMRAALEIEKSDFQKRLSVVNKEIEELPKKELEMISIERKYKMDDN
                     YYTFFLQKRAESEILKASNTPDNNILDKARRISVTNSDKQSKTTLMFLLFGLLIPTVI
                     VILIELLNPAVRSSKEVEKNSTFPLIGGVRHTKSTDPLLVSKNPRSAFTEMFRVIRTR
                     IEFIVQRKTNIMILNTSTESGDGKTYFSINLAAIYSMASKKTILVDMDIRKPSVNQRF
                     SIIQPNGVTNYLIGQCSLDEVILHLPKVDFDILPAGSIPPNPGELIRSDKLAEMFLEL
                     RKRYDYVIVDSSPIGMVTDAYSLAQLSDVNLFVVRNGKTNKSFYKKLSSQLRLDNIPN
                     LYTILNDVVDDGSRYSKYKLYKYAYLFGYSYGYTTKQKKGQPDKYFHYYEDDTEI"
     gene            1578..2726
                     /gene="gmd"
                     /locus_tag="VI413_08770"
     CDS             1578..2726
                     /gene="gmd"
                     /locus_tag="VI413_08770"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005635384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008446 - GDP-mannose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEY6914756.1"
                     /translation="MKKVALITGITGQDGAYLAELLLKKGYVVHGLKRRSSLFNTERI
                     DHLYQDPHVDDRNLILHYGDMTDSMNLTRIIQETQPDEIYNLAAMSHVKVSFDTPEYT
                     ANADGIGTLRILEAVRLLNMTKKTRIYQASTSELYGLVQEVPQKESTPFYPRSPYAVA
                     KMYAYWITVNYREAYGIHASNGILFNHESPLRGETFVTRKITRAAARIAMGMQNKLFL
                     GNLSSKRDWGHAKDYVRAMYLILQQDEPSDYVIATGITTEVREFVRMAFAEIGIIIDF
                     KGEGIDEKGYIGSIDETVFTEQVGAEFLEGIRSIKDSIVEVDPNYFRPTEVELLIGDA
                     TKSRTVLGWVPEYDLKALVEDMMQSDVKLMKKETYLKEGGFRVLNYFE"
     gene            2747..>3149
                     /locus_tag="VI413_08775"
     CDS             2747..>3149
                     /locus_tag="VI413_08775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008652539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY6914757.1"
                     /translation="MDKSSKIYIAGHNGMVGSAIKRNLEARGYTNFVTRSFEELDLLN
                     EQAVANFFATEKPEYVILAAAKVGGIVANNTYRAQFIYENLMIQNHVIHQSYVHGVKK
                     LLFLGSSCIYPRMAEQPIHENALLTGVLEDTN"
BASE COUNT         1081 a          583 c          612 g          873 t
ORIGIN      
        1 gaaatgacta atttcagaca gacaaataaa attgttgatg tcaatagcca tacaagtgaa
       61 ttgttaggaa aatcatccaa atttgatgcg cagcaatcag aattaaaact gaaagagacc
      121 tatctggatt atctgacaaa atacctgaaa acaaatatga cggatggtga gataatagca
      181 cccggaagct taggtattac cgaccctatg ttaatggctg ccgttcagca gattaatgac
      241 ctgtattctc aacgttccga agtaacagaa aagaatttat attatgcaaa atacacaaaa
      301 cagatagaga atgccaaact aactgttttg gaagttgtga aaaatatgcg ggcagcactt
      361 gaaattgaaa aaagtgattt tcaaaaacgc ctgtcagtcg tcaacaaaga aatagaggaa
      421 cttccaaaaa aagaactgga aatgatttcc attgagcgga aatacaagat ggatgacaat
      481 tattacacat tcttcctcca aaaacgtgca gaatcggaaa tcctcaaagc atcgaatacc
      541 cctgataata atattctgga caaagcccgt agaatttctg ttacaaattc ggataagcaa
      601 tcaaaaacaa cacttatgtt tttactgttt ggattactca taccaacggt aattgtaatt
      661 ctaattgagt tgctgaatcc tgctgtccgc tcatccaaag aagttgaaaa aaactcaacc
      721 ttccctttga ttggtggtgt ccggcataca aaaagtactg atcctttatt ggtttcaaag
      781 aatccaagat ctgcctttac agaaatgttc cgtgttattc gaacgcgcat tgaattcatt
      841 gtacaacgga agacaaacat catgattttg aacacttcca ccgaatcggg agatggtaaa
      901 acttatttct ctatcaactt ggcggcaata tattcaatgg ccagcaaaaa aacaattttg
      961 gtagacatgg atattcggaa accaagtgtc aaccaacgat ttagcattat acagcccaat
     1021 ggagtaacaa attatcttat tggtcaatgt agcctggatg aagttatttt acacttacca
     1081 aaagttgatt ttgatatttt accggcaggt tcaataccac caaatccggg ggaattaata
     1141 agatcagaca aattagctga aatgtttttg gagttgcgca aacgttatga ttatgtgatt
     1201 gttgattcaa gccctattgg aatggtaaca gatgcatact cactggcaca actttccgat
     1261 gtaaacttat ttgttgttag aaatgggaag acaaacaaat cattttacaa gaaactaagc
     1321 agccagttga gacttgataa tatcccgaac ttatacacta ttttaaacga tgtggtagac
     1381 gatggaagca gatattcgaa atacaaatta tataaatatg cgtatttgtt cggatatagt
     1441 tatggctata caaccaaaca gaaaaaaggt cagccggata aatatttcca ttattatgaa
     1501 gatgatacag aaatctaatt ttatttatac ttctatctaa tccttttaca agaaacaatt
     1561 aaaaaacaga cataaatatg aaaaaagtag ctctcataac cggaattacc ggacaagacg
     1621 gtgcttattt agccgaactc ttattaaaaa aaggatatgt tgttcacggc ttaaaacgcc
     1681 gttcgtcact tttcaatacc gaacgtatcg accatttgta tcaggaccca catgtagatg
     1741 acagaaacct gatcttgcat tatggtgaca tgactgattc tatgaatctt acccgcatta
     1801 ttcaggaaac ccaacctgac gagatttaca acctggctgc aatgagccac gtgaaagtaa
     1861 gtttcgatac gcctgaatac acagcaaatg ccgatggtat tggtacctta cgtattctgg
     1921 aagctgttcg tttgctgaac atgactaaaa aaaccagaat ttatcaggct tctacttctg
     1981 agttatacgg attggtccag gaagttccac aaaaggaatc cacaccattt tatccacgct
     2041 caccttatgc ggtagccaaa atgtatgcat actggatcac cgtgaattat cgcgaagcat
     2101 atggaattca tgcaagcaat ggaattctgt tcaaccacga atctccgtta cgcggcgaaa
     2161 catttgtgac acgtaaaatc acacgtgctg ctgcccgtat tgccatggga atgcagaaca
     2221 aactgttttt gggaaatctt tcttcgaaac gtgactgggg ccatgcaaaa gattatgtac
     2281 gtgccatgta cctgattttg caacaagatg aaccaagcga ttacgtgatt gcaacgggaa
     2341 ttacgactga ggtgcgtgag tttgttcgta tggcttttgc cgaaattggt atcatcattg
     2401 atttcaaagg agaaggaatt gatgaaaaag gctatatcgg tagcattgac gaaactgttt
     2461 ttacagaaca ggttggcgct gaattcctcg aaggtattcg ttcaatcaaa gattcaattg
     2521 tagaagttga ccccaactac ttccgcccca ctgaagtgga attgttgatt ggtgacgcta
     2581 caaaatcgcg gaccgttttg ggttgggttc cggagtatga tcttaaagca ttagtagaag
     2641 acatgatgca atcagatgta aaacttatga aaaaagaaac atacctgaaa gaaggtggat
     2701 tcagagtatt gaattatttt gaataaattc ctttactaaa taatttatgg ataaaagttc
     2761 taaaatatac attgccggac ataacggcat ggtaggttcg gccatcaaac gaaatctgga
     2821 agcaagagga tatacaaatt ttgtaacccg ctcattcgaa gaactggatc tgctgaacga
     2881 gcaggctgtt gccaattttt ttgcaactga aaagccggaa tacgtaatat tggcagcagc
     2941 caaagtaggt ggcattgttg ccaataatac ttacagagct caattcattt acgaaaacct
     3001 gatgattcaa aatcatgtga ttcatcaaag ttacgtacat ggagtaaaaa aacttctgtt
     3061 tctcggatcc tcatgtattt atccgcgaat ggccgaacaa cccattcacg aaaatgcact
     3121 attgaccgga gtactggaag acacaaatg
//
LOCUS       DATDNM010000516         2401 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_706811, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000516 DATDNM010000000
VERSION     DATDNM010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_706811"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..925
                     /locus_tag="VI413_08780"
     CDS             <1..925
                     /locus_tag="VI413_08780"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6914758.1"
                     /translation="LGIWPIFITIFLTGLSRGILMPAHTALLGQLVDKKDYANAATWS
                     SANWQVGAVMGPAVGGLIYGFSSISIAYGSIFVIYLCSVLMIGRVQIKHIVNVVQKSV
                     DEDIFSRIREGIRFVLKSPELVGAFSLDMFAVLFGGAVAMLPVFASDVLHVGPEGLGF
                     LRACPAIGAILMSFYLMFHPPLKNSGRTLLLAVAAFGICMIGFAYSQYFWLSAVLLLL
                     SGLFDNVSVVIRGTILQLYTPDEMRGRVASVNSIFIGSSNELGAFESGVAAKFIGLIP
                     SVAFGGIMTLIVVATTAKINPVLRRLSLKSN"
     gene            1150..1857
                     /locus_tag="VI413_08785"
     CDS             1150..1857
                     /locus_tag="VI413_08785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016661546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY6914759.1"
                     /translation="MQKQHKFSAKDKMVDLINEDYSLLLVISRFGISLGFGDNTVKEV
                     CKANNIHCETFLAIVNFLSEGDFEVGNVYEDIDPESVIGYLKNAHTYFIDFKLPAIRS
                     KLLQAVDSPEQIVPYATILIKFYDEYVSEVGKHMEYENKVVFPYVIDLLAGKRNKKYS
                     ISVFEDRHNEIDSKLAELKNILIKYFPASGNNHLLTEVLFDILSCEKDLASHNQVEDY
                     LFVPAIEAIEQKNMEAK"
     gene            1854..>2401
                     /locus_tag="VI413_08790"
     CDS             1854..>2401
                     /locus_tag="VI413_08790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6914760.1"
                     /translation="MNNELLKIAIAEPSVIIRSGLAVALKRIPGIRIQPMEIISIDSL
                     GNFLRLHKPDILIVNPSFWGYFDISKLKEENPELRWMALLSSAVDDSLLRAYDESISI
                     YDNVDQLKEKLEKLLDSPVEENSDDADTLSIREKEVIVSVVKGLTNKEIAEALFLSTH
                     TVITHRRNIARKLEIHSTAGLT"
BASE COUNT          646 a          427 c          547 g          781 t
ORIGIN      
        1 cctcggcatt tggccaatct tcataactat ttttctaaca ggtctttcgc gtggaatact
       61 tatgccggcg cataccgctt tgctgggtca attggttgat aaaaaagatt atgcaaacgc
      121 cgccacctgg agcagtgcca actggcaagt gggagcggtg atgggacccg ccgttggtgg
      181 tttgatttat ggtttttctt ctatttccat tgcttatgga tctatttttg tgatttattt
      241 gtgttctgtg ttgatgattg gccgagtgca gattaagcac attgtcaatg tcgtgcagaa
      301 aagtgttgat gaagatattt tcagtcgtat cagggaagga attcgctttg tgttgaaatc
      361 acctgaactg gttggtgcat tttcgctgga tatgtttgcg gtgctttttg gcggtgcagt
      421 ggctatgtta ccggtttttg catcggatgt gctgcacgtt ggccccgaag gattgggatt
      481 tctgcgagct tgccccgcta ttggagctat cctgatgtcg ttttacctaa tgtttcatcc
      541 gccgttgaaa aacagcggac gcaccttgtt gctggctgtg gcggctttcg gcatatgtat
      601 gattggtttc gcttattctc aatatttctg gttgtcggca gttttattgc tcctgagcgg
      661 tttgttcgac aatgtgagcg tggtgattcg cggaacaatt cttcaacttt atacccctga
      721 cgaaatgcgt gggcgagttg cttcggtcaa tagtattttt atcggctcgt ccaatgaact
      781 gggagccttt gagtcaggcg ttgcggctaa gtttatagga ttgattcctt cagttgcttt
      841 tggcggaatt atgaccttga ttgtggtagc cacaacggct aaaattaatc ctgtattgcg
      901 gcggttatcc ttgaaatcaa actaaaaata cctaaaacag gggattgcag cgcaaaaggc
      961 aaaatccgat ctttgcaaca gaaaaattta ccagatttta gtttgtaata gttagtacct
     1021 attgttatgc cggagcactt aaagccattt gtgttccggc atttttaatt gattgttctt
     1081 aaaaataaac atttaaaaca gttgcagtgt tatattattt catttaacac aaatataaaa
     1141 tttcccaata tgcaaaagca acataaattt tcggcaaagg ataaaatggt tgatctgatt
     1201 aatgaagatt attctttgtt gctcgttatc agccgttttg gtatttcgct agggtttggc
     1261 gacaatacag ttaaggaagt ttgtaaagcc aataatatcc attgcgaaac ttttctggca
     1321 atagtcaatt ttctttcgga aggcgatttt gaagtcggaa atgtgtacga ggatattgat
     1381 ccggaatctg taattggtta tctgaaaaat gcacatactt atttcattga ttttaagctt
     1441 cctgctattc gctcaaagct tttgcaggct gttgattctc cggagcaaat tgtgccgtac
     1501 gccaccattc ttattaaatt ttacgacgaa tatgtttctg aagttggcaa gcacatggaa
     1561 tacgaaaaca aagtggtttt tccgtatgta attgatttgc ttgcaggtaa aagaaataag
     1621 aaatacagta tttccgtttt cgaagatcgt cataatgaaa ttgattccaa actggcagaa
     1681 ttaaaaaata tcctgattaa atactttccg gcttcgggaa ataatcattt acttacggag
     1741 gtattgtttg atattttatc gtgcgaaaag gacttggctt cacacaatca ggtggaagat
     1801 tatttgtttg taccggccat tgaagctatt gaacaaaaaa acatggaggc caaatgaata
     1861 acgaactgct aaaaatagct attgcagagc cttcggtgat tatccgcagc ggactggccg
     1921 tggcattgaa acggattccg ggcattcgta tccagcctat ggaaattatt tctatcgatt
     1981 cgctgggtaa tttcctgcga cttcataagc ccgatatttt aattgtcaat ccttcttttt
     2041 gggggtattt tgatatttcg aaactcaagg aagaaaaccc ggaactccgc tggatggctt
     2101 tgctcagttc ggcggtagat gacagtttgt tgcgcgctta cgacgaatct atcagcattt
     2161 atgataatgt agaccagcta aaagaaaaac tcgagaaatt gcttgattca ccggttgaag
     2221 aaaattccga tgatgcagat acgttgagta ttcgtgaaaa agaagtgatt gttagtgtgg
     2281 ttaaaggcct gactaataag gaaattgcag aagctttatt tctttcaacg catacagtta
     2341 taacgcaccg gcgtaatatt gcccgtaaac tggaaattca tagtacggca gggcttacaa
     2401 t
//
LOCUS       DATDNM010000517         2597 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1775163, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000517 DATDNM010000000
VERSION     DATDNM010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1775163"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..243
                     /locus_tag="VI413_08795"
     CDS             <1..243
                     /locus_tag="VI413_08795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfate exporter family transporter"
                     /protein_id="HEY6914761.1"
                     /translation="WFILFFILAMVLNTYLDFPKQITHSIVLVSRQSLTLTLFFIGAG
                     LSRSTIKSVGIKPLVLGISLWFFIAFISLLFICFLY"
     gene            complement(421..807)
                     /locus_tag="VI413_08800"
     CDS             complement(421..807)
                     /locus_tag="VI413_08800"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY6914762.1"
                     /translation="MKLRFLLPALILMLVSINSLSAQKTQLNSPEIKKILKTNKTIVV
                     LDVRTPEEFAAGHLKDAKNIDVRQPDFNSKIDKLDKKATYLVYCRTNHRSGIATDYMV
                     QKGFKNIYQMMDGFPGWAANNFPWEK"
     gene            complement(831..1037)
                     /locus_tag="VI413_08805"
     CDS             complement(831..1037)
                     /locus_tag="VI413_08805"
                     /inference="COORDINATES: protein motif:HMM:NF022577.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2892 domain-containing protein"
                     /protein_id="HEY6914763.1"
                     /translation="MKTNMGIIDRIIRIVLALILVGLYFANVVSGTLAIVLLVLAGVF
                     ALTTLIGFCPLYWPFGINTWGKKK"
     gene            complement(1119..2390)
                     /locus_tag="VI413_08810"
     CDS             complement(1119..2390)
                     /locus_tag="VI413_08810"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6914764.1"
                     /translation="MKEINAVDFEKEVLAGGKVVLDFYSTECPPCEALAPKFEAMSEL
                     YGDKIKFLKIFRQGNRELATKLGVSSSPTLLFFENGKQILDTISGGIKKSEITERLDK
                     MLTPEEVVAIKANQKPIVSEYDVAILGGGPAGLTAGIYLGQAKIKTVLIDPALPGGYM
                     GITHQVSNYPGFEQPQPGFMLAHYMSEQAKHTGIDFKVAVDITSVDLVKKEIVIDELE
                     TIKAKKIIIATGTTPNTMNAPGEKEYKGKGISYCATCDAKYFVDKEVTVIGGGNSAVE
                     EALFITKFARKVTMIHQFDKLTANQTAIEQLQGNDKITVMYEHEPRAFEKRGNIMITS
                     IEDLKTKQVKELESDGVFVFIGFKSNVEVLGKQLPERNNWGYIITDEDMKTSIPDVFA
                     VGDIISKKYRQITTAVADGTIAAMTVSKELN"
BASE COUNT          733 a          559 c          430 g          875 t
ORIGIN      
        1 tggtttatct tgttctttat actcgccatg gttttaaata cttatctgga ttttccgaag
       61 caaataaccc acagcattgt tttggtttcc cgacaaagtt taacgctgac actcttcttt
      121 atcggagccg gattgtcgag gtcaaccatt aaatccgtgg gaataaaacc gcttgtgtta
      181 ggcattagct tgtggttttt tattgctttt atcagcttgt tgtttatctg ctttttatat
      241 tgataaatta tgaataatcc ggaacctgac cgtcacattt tcaaagtcgt tgcttatttt
      301 gaacagggtc ataactgttc aaaataagca aattattact ccgcaaacat taaacaacta
      361 atattaaagg aagaatacag caaaaccaat ctttcacatt tatctttatt tcatcctggt
      421 ttatttctcc caaggaaagt tattcgctgc ccagccggga aaaccgtcca tcatttgata
      481 tatattttta aaacccttct gtaccatgta atcggtggca attccactgc gatgattggt
      541 tctacaataa accagataag tggctttttt atccagttta tctattttgg agttaaaatc
      601 aggttgacga acatcaatgt tttttgcatc ttttaaatgc cctgcagcaa attcttccgg
      661 cgtcctgacg tctaaaacaa caatggtttt gttggttttc aaaatcttct taatttcagg
      721 ggaattaagc tgtgtttttt gagcagacaa actgttgatt gacaccaaca tcaaaatcaa
      781 tgctggcaat aaaaatctta gtttcataaa tttcttgttt taaagttgaa ttatttcttt
      841 ttgccccagg tatttatccc gaaaggccaa tacaaagggc aaaaaccaat taacgttgtc
      901 agggcaaata ctcctgccaa aacaagtaac acaatggcca gcgttccgct aactacattt
      961 gcaaaataca atccgaccaa aatcaaagca agcacaatgc ggatgattct atcaataatt
     1021 cccatgtttg ttttcataat ttctaatttt taaatttgtt tgttattttc ttaaatcttt
     1081 tccaaagttt agaactttgg aaaagattac cggaagattt aattcaattc tttcgaaaca
     1141 gtcatagcag caatggttcc atcagccaca gccgtggtaa tctggcggta tttcttactg
     1201 ataatatcac caacggcaaa tacatccgga atacttgttt tcatatcttc gtcagtaatt
     1261 atgtagcccc agttattcct ttcaggtaat tgtttgccaa gaacttccac attcgattta
     1321 aaaccgataa atacaaaaac accatccgat tcaagttctt ttacctgttt ggttttcaag
     1381 tcttcaatac ttgtaatcat tatgtttcca cgtttctcaa aagcacgtgg ctcgtgttcg
     1441 tacatcactg ttattttgtc gttgccttgc agttgttcaa tagcggtttg gttcgcagtt
     1501 agtttgtcaa actggtgaat catagtcact tttctggcaa atttagtgat aaacaaagct
     1561 tcttccacgg cagaatttcc acccccaata accgttactt ctttatccac aaagtatttg
     1621 gcatcgcagg tagcacaata cgaaatacct ttgcctttat actctttttc acccggagca
     1681 ttcatcgtat tcggtgtagt accggtggca atgataattt tcttcgcttt gatggtttca
     1741 agttcgtcaa taacaatttc ttttttcacc aaatccaccg aagtaatatc cactgctact
     1801 ttaaagtcaa ttcccgtatg tttggcttgt tcactcatgt agtgtgccag cataaatccg
     1861 ggttgtggtt gctcaaatcc gggataattt gaaacctgat gggtaatgcc catgtaaccg
     1921 ccgggtaacg cggggtcaat taataccgtt ttgatttttg cctgaccaag ataaatacca
     1981 gccgtcaacc cggcgggacc gccacccaaa atagccacat catattccga aacaatcggt
     2041 ttttgattgg ctttaatggc tacaacttcc tccggagtca gcattttgtc taatctttct
     2101 gtgatttccg acttttttat accaccactg attgtatcta aaatctgttt gccattttcg
     2161 aaaaacaata acgttggcga agaactcacg cctaatttgg tggctaactc gcggtttccc
     2221 tgccggaaaa tcttcagaaa tttgatcttg tcaccataca gctcagacat agcttcaaat
     2281 tttggtgcta acgcttcgca aggcgggcat tcggttgaat aaaagtcaag aaccactttt
     2341 ccaccagcca gaacttcctt ttcaaaatct actgcattaa tttctttcat atccttatac
     2401 tctttatatt ttctgataca tgttcattta ttcatgtata aatactattt aaaggacagg
     2461 tcacaacctg ccctaccaat ttcaatgatt taaataatag gctgaaccca agctcaacag
     2521 ctcttttacc ggccggcaat cgggcgtatt tgggtgtccg tttttgtttt tggcaaccga
     2581 agcacaacca ccaccac
//
LOCUS       DATDNM010000518         2221 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_387480, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000518 DATDNM010000000
VERSION     DATDNM010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387480"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /locus_tag="VI413_08815"
     CDS             complement(<1..396)
                     /locus_tag="VI413_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEY6914765.1"
                     /translation="MSNVIGKVKKTVIGNPRDLRDSSTFRQISLVVFLAWVGLGSDAL
                     SSSCYGPEEIYKTLGAHVNLSIIVGLITMVTIFIISTSYSQIIKLFPHGGGGYLVASR
                     LISPNVGMISGCALLIDYVLTISISVSSGA"
     gene            584..1804
                     /locus_tag="VI413_08820"
     CDS             584..1804
                     /locus_tag="VI413_08820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HEY6914766.1"
                     /translation="MNNKEVNSPIYIDEYDYSLPDERIAKYPLAKRDSSKLLVYKNAT
                     ITENTFSNIAEFLPKDSLLVYNNTRVIQARLVFHKETGARIEVFCLEPLVPADYAQSL
                     GATTECVWKCMVGNLKKWKEGTLSKTIEIDGKTCTFVAEHLSTEGNTHSIHFTWDNAD
                     IHFADILEKAGELPIPPYLHRKTEESDLTTYQTVYSKIKGSVAAPTAGLHFTPEVFDT
                     LQPKNIETEELTLHVGAGTFQPVKTRDIAHHLMHTEVISVNRSTIENLQKKFGSIIAV
                     GTTSVRTLESLYYIGLKLQNNPANTDFSVSQWTPYETQSELSTFDAFQNILNYLDANN
                     LTTLHAETQIMIKPGYRFHVVNGIITNFHQPKSTLLLLVSAFVGGNWKEIYDYALENN
                     FRFLSYGDSSLLMK"
     gene            complement(1870..>2221)
                     /locus_tag="VI413_08825"
     CDS             complement(1870..>2221)
                     /locus_tag="VI413_08825"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6914767.1"
                     /translation="NATKGNALEENADIVSRLQDGEVVRYEVEHYHKDGHVIPLSVTA
                     SMIDIDARFYLGFYQDITERKEAEAAIKKKMADLEWLNNISVGRELTMIELKKEINEL
                     LKRLGEEPKYEISK"
BASE COUNT          723 a          469 c          401 g          628 t
ORIGIN      
        1 agccccactc gaaacagaaa tagagatagt tagcacgtaa tcaatcagca aggcacaacc
       61 ggaaatcata cccacattcg gggaaatgag cctggatgca actaaatacc caccacctcc
      121 atgaggaaac agtttgataa tctgcgaata actggtgctg ataataaaaa ttgtcaccat
      181 ggttattaga ccgacaatga tagacaaatt tacatgagca cccagcgttt tataaatttc
      241 ttccggacca taacacgaag atgacaacgc atcggaacca aggccgaccc atgccagaaa
      301 tacaacaagt gaaatttgcc gaaacgtgct gctatctctc aaatcgcgcg gatttccgat
      361 aacggttttc tttactttac caataacatt agacataact tttttctcta aaaaataaac
      421 ataaatacct cgttgcaaag ttccgatata ttttataaat atggcataaa gatatttttg
      481 ctatgcataa agattttata aagattgaat gtgggcaggt cagaaacagg tagaacacat
      541 ttttttacta cttttgtgct ccatttttaa ttcaattttt tccgtgaata acaaagaagt
      601 aaattctcct atttatatcg acgaatacga ttattcgttg cccgatgaac gcattgcaaa
      661 atatccttta gcaaaacgcg attcgtccaa attattggtt tataaaaatg caacgataac
      721 cgaaaatacg ttttcaaata ttgctgaatt cctaccaaag gatagtttgt tggtgtacaa
      781 caacacccgt gttattcagg cgcggttggt tttccacaaa gaaaccggtg cccgcattga
      841 agttttttgt ctggaaccgc tcgtacctgc cgattatgcc caatcgttgg gtgcaacaac
      901 agaatgtgtc tggaaatgca tggtgggaaa tctgaaaaag tggaaagaag gaacattaag
      961 caagactata gaaattgacg gaaaaacatg cacattcgta gcggaacatt taagcacgga
     1021 aggaaataca cacagcattc attttacgtg ggataatgcc gatattcatt tcgccgacat
     1081 tctggaaaaa gccggagaat tacccatccc gccctatttg caccgcaaaa cagaagaaag
     1141 cgacctgacc acataccaaa cagtttattc caagataaaa ggttctgtag ctgcacccac
     1201 tgccggattg cactttacac ccgaagtatt tgatacgctg caaccaaaaa atatcgaaac
     1261 cgaagaattg actttgcacg tgggtgccgg aacattccaa cctgtgaaaa cacgggatat
     1321 tgcacaccat ctcatgcata ccgaagttat ttcggtgaac cgcagtacca ttgaaaattt
     1381 gcaaaaaaag tttggaagta ttattgcggt gggaacaact tcggtaagaa cgttggaaag
     1441 tttgtattat attggactaa agctgcaaaa caatcctgca aataccgatt ttagtgtttc
     1501 gcaatggaca ccctatgaaa cccaaagcga actgtcgact tttgatgcat ttcagaatat
     1561 tctcaattat ctagatgcga acaatctgac aacgctacat gccgaaaccc agattatgat
     1621 taaaccaggt tacaggtttc atgtggttaa tggtataatt accaatttcc accaaccgaa
     1681 aagcaccttg ctcctgctcg tttcggcttt tgtgggcggc aactggaaag aaatttatga
     1741 ttatgcattg gagaataatt tcaggttcct gagttatgga gatagttcgt tgttgatgaa
     1801 ataaaaaaag ttaaggcctc attctatgtg aagccttaat tttctaaaaa cacgttaaca
     1861 catcattgtt tacttagata tttcatattt aggctcttca cccaaccttt tcaacagttc
     1921 gtttatttcc ttcttaagct ctatcattgt aagttcgcgc ccaaccgata tattattaag
     1981 ccactctaaa tcggccattt tctttttaat ggcagcttcc gcttccttac gttcagtaat
     2041 atcctgataa aatcccagat aaaaccgggc atcaatgtca atcatacttg ctgtaacact
     2101 tagaggaatg acatgtccat ctttatgata atgttcaacc tcataacgca caacttcacc
     2161 atcctgcaag cgactaacaa tatcggcgtt ttcttcaaga gcattccctt tggttgcatt
     2221 t
//
LOCUS       DATDNM010000519         3593 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1456115, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000519 DATDNM010000000
VERSION     DATDNM010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3593
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1456115"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..327)
                     /locus_tag="VI413_08830"
     CDS             complement(<1..327)
                     /locus_tag="VI413_08830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007660403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914768.1"
                     /translation="MNSKNKGNFKKQIKGLGILSCFILLLNPHLEAADLTSWPTINTE
                     MRPGARWWWLGSAVDKANLTYNLEEYARVGLGTVEITPIYGVQKNDANDIQFLSPKWM
                     EMLQHTM"
     gene            complement(729..3554)
                     /locus_tag="VI413_08835"
     CDS             complement(729..3554)
                     /locus_tag="VI413_08835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008762223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6914769.1"
                     /translation="MRTTIHLIGLLLLATTLFAQQSETQYLSGTGLGNEKVWKFYCTA
                     GMNSKKWSKIKVPSQWELQGFGEYTYGRWYKRGLKNPSMEQGFYEYTFSVSATWKNKQ
                     ISIVFEGSMTDTEVKINGQLAGEIHQGGFYKFSYDITDKLKVGSKNKLEVKVSKHSEN
                     KSVNGAERRADWWLFGGIYRPVYLEAKPQMHIEHIAVNAQMDGQLSADIYTTPLPAGY
                     SVSTSISPLKGKGKFDIQNFKLQAGVNSQQVDASWKNVENWTPETPNLYNLKLELRNE
                     KNEVVHVYTERIGFRTVEFRRQDGIYVNNVKIVMKGTNRHSFYPDGGRTTNREISLQD
                     VKLIKEMNMNAIRSHYPPDKHFLDMCDSLGLFYLDELAGWQNAYDTETGKKLVKEMVE
                     RDVNHPCIVLWDNGNEGGWNTKLDGEFAKHDPQQRHVIHPWADFDGLDTHHYPAYQTG
                     VARFTNGHNVFMPTEFAHGLYDQGNGAGMEDFWNKYTESPLFAGGFTWAFADEAVRRS
                     DKNGFIDSDEFNAPDGILGPYREKEGSFYTIREVWSPIQLKPILITPSFNGDIFVSNK
                     YLYNKLGGCTLQYGLYSVGSPLTSNTKKVLEEGTLNMPDITPGETAKMTLPVSNSFFT
                     ANLLELKAVDAAGNLVCNWTYPVQSAQNYSAKQLGNIPQTGQASFQKTDSTAILKGGN
                     TSVQFNLNTGLITEVINKCGQLSLANGPVAVGMKTKFKEYKIRQEGEKAVLAFFYLGG
                     VDSIRWEMTPAGLLYMSAIMLNRASGGTGFDDSFMEENITNLGFTFSYPESKVQGMEW
                     YGRGPYRVWKNRIKGTNYGLWNKAYNNTITGESFENLVYPEFKGYHANLYWATLQTKE
                     TSFSVYSESDGVFFRVFTPEEPKHRQNGENSMPDFPAGDLSFLYEIPAIRDFKPIAQL
                     GPNSQPSSVRIKKGDDGISMKLWFDFR"
BASE COUNT          859 a          825 c          751 g         1158 t
ORIGIN      
        1 catggtgtgt tgaagcattt ccatccattt gggtgatagg aattgtatgt cattcgcatc
       61 gtttttctga acgccgtaaa taggtgtaat ttccacagtt cccagtccta cgcgggcata
      121 ttcttccagg ttgtaagtca gattggcttt atcaaccgca cttcccagcc accaccaacg
      181 tgctccgggg cgcatttccg tatttattgt tggccaggag gtaagatctg ctgcctccaa
      241 atgggggttc aagagtaaga taaagcagga taagattcct agccctttaa tctgcttttt
      301 gaaattacct ttgtttttcg aattcataat atgtgttttc tgttgggtta atgtcttata
      361 gtcaattgac taacctgttt tatctattgc tccaatatgt ctggtctggt actctaatat
      421 gtattatcta ttgctctaat atgtcttatc cactactcta atatgtctta tacactgctc
      481 caatatgtca tatccactgg tccaatatgt cttatcaacc acattcaaat gtctggtcaa
      541 ttacctcgct atattatgtc tgttaggtaa ctatacctta tcaactgctg taatatgtat
      601 tgtcaatctc attaatatat cttgtcaacc attgcaatag gaagttctat attcataatt
      661 tattgacctg cccttgtcac taaataagta ggctaatcta atcccccttt agggggtagg
      721 ggttcactct atctgaaatc aaaccacaat ttcatgctga ttccatcgtc tccttttttt
      781 attcgcactg atgaaggttg gctgttcggg ccaagttgtg ctattggttt gaaatcgcgt
      841 atagccggaa tttcatagag gaacgacagg tctccggccg gaaaatcggg cattgagttt
      901 tcaccattct ggcggtgttt gggttcttcg ggtgtgaaaa cacggaagaa aacgccatcg
      961 ctttcgctat atactgagaa agatgtttct ttagtttgca gtgtggccca atacagattg
     1021 gcatgatacc ctttaaattc gggataaacc agattttcaa agctttcgcc ggtaatagta
     1081 ttgttgtatg ctttgttcca aagtccgtaa ttggttcctt tgatgcggtt tttccacacc
     1141 cggtaaggac cgcggccata ccattccatt ccctgtactt tgctttcggg gtacgagaat
     1201 gtgaatccga gattggtgat gttttcttcc ataaaagagt cgtcgaagcc tgtgccgccc
     1261 gaagctctgt tcagcattat ggccgacatg tacagcaacc cggccggtgt catttcccaa
     1321 cggatagagt caactcctcc cagataaaag aaagccagca ccgctttttc accttcctgg
     1381 cgaatcttat attctttgaa tttcgttttc atcccaacgg caaccgggcc atttgccagc
     1441 gacagttgcc cgcatttatt aatgacttcc gtaataagtc ctgtgttcag attgaattga
     1501 acagatgtat ttcctccttt taaaatagcg gtgctatctg tcttctggaa acttgcctgt
     1561 ccggtttggg ggatgtttcc caactgtttt gcgctgtaat tttgtgccga ttgtacaggg
     1621 tacgtccagt tgcaaaccag attcccggct gcatccacag ctttcagttc caatagattg
     1681 gctgtaaaga aactgttcga tacaggcagt gtcattttag ccgtttcgcc cggagtaata
     1741 tcaggcatat tcaacgttcc ttcttccaat acttttttag tattgctggt taatggagaa
     1801 ccaacggaat ataaaccata ttgcagcgtg caacctccca gtttgttgta caggtatttg
     1861 ttgctcacaa aaatgtctcc gttgaatgag ggtgtaatca atatcggctt tagttgaatg
     1921 ggcgaccaca cctcacgaat ggtataaaag cttccttctt tttcgcgata tggccccaga
     1981 atgccgtccg gtgcattgaa ttcatcggag tcaataaacc catttttatc cgaacgacgc
     2041 acggcctcat cggcaaatgc ccaggtaaac ccacctgcaa acagcggact ttcggtgtat
     2101 ttgttccaga aatcctccat gccggcacca ttgccctgat cgtacaatcc atgtgcaaac
     2161 tcggtaggca taaatacatt gtgtccgttg gtgaagcgcg ccactccggt ttgatatgcg
     2221 gggtagtggt gcgtgtccaa accatcaaag tcggcccacg gatgaataac atgacgttgc
     2281 tgtgggtcgt gttttgcaaa ttcgccgtcc agttttgtgt tccagcctcc ttcgtttcca
     2341 ttgtcccaaa gcacgataca cggatggttc acatcacgtt ctaccatttc ttttaccagt
     2401 tttttaccgg tttcggtgtc ataagcattt tgccagcctg ccagttcgtc taaataaaac
     2461 agccccaatg aatcgcacat atccagaaaa tgtttgtcag gtggataatg cgaccggatg
     2521 gcgttcatat tcatttcttt gatgagcttc acgtcttgta aactgatttc acgattggta
     2581 gttcgtccgc catccggata aaacgagtgg cggtttgttc ctttcattac tatttttacg
     2641 ttgttgacgt aaatgccatc ctggcggcgg aattcaacgg tccggaaacc tattctttca
     2701 gtataaacat gaacaacttc atttttttca ttccggagtt ccagctttaa attgtacagg
     2761 ttgggagttt ccggagtcca gttctcaacg ttcttccaac tggcatccac ttgttgggag
     2821 tttactccgg cttgcagctt gaaattttgt atatcaaatt tgcctttgcc tttcaggggc
     2881 gaaatacttg ttgaaacaga atagccggcg ggtaggggag tagtataaat gtctgcgctc
     2941 agttggccgt ccatttgcgc atttaccgca atgtgttcga tgtgcatttg tggtttggct
     3001 tccagataca ccggacgata gatgcctcca aacagccacc agtcggcacg gcgttcggct
     3061 ccatttaccg atttgttttc ggaatgtttc gataccttca cttccagttt gtttttgcta
     3121 cccaccttca acttgtcggt tatgtcgtat gaaaacttat aaaagccacc ctgatggatt
     3181 tcaccagcaa gctgtccgtt tatctttact tcggtgtcgg tcatcgaacc ttcgaaaacg
     3241 atggagattt gtttattctt ccaagtcgca gaaacagaaa acgtatattc ataaaagcct
     3301 tgttccatgc tcgggttttt gagtccgcgc ttgtaccaac gtccgtaggt atattcacca
     3361 aacccttgca gctcccattg cgatggcact tttatcttac tccacttttt gctgttcatg
     3421 ccagctgtgc aataaaattt ccatactttt tcattgccca aaccagtccc ggacaggtat
     3481 tgtgtttcgc tttgctgcgc aaaaagagtg gtggcgagca gtaataatcc aataaggtga
     3541 atcgtagttc tcatgttatt tttcgtgttt gtttatcaaa tgatacacaa atc
//
LOCUS       DATDNM010000520         4389 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1561789, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000520 DATDNM010000000
VERSION     DATDNM010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4389
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1561789"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..809)
                     /locus_tag="VI413_08840"
     CDS             complement(<1..809)
                     /locus_tag="VI413_08840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Por secretion system protein"
                     /protein_id="HEY6914770.1"
                     /translation="MKKSIIILLTLSISVWSWAQLVTTNPQFITQDNGITEITIDAAS
                     PDGNLGLKGYTGDVYAHVGVITSASTSSSDWKYVVTPWPTATNLSQANTTKNKLTSLG
                     NDKWKLTISPGIRSYFGIPAGEEILKIALVFRNADGSRQEKTTTGGDIFIDLVKSGLN
                     IAFLNPTSNQSVSPGTVMNLQIGSSTPSNLNLFINGTSVTTASAATTLSYSYTFSNTI
                     DYTIIAQATIGPETVADTIYVCVPAPVNSQTRPVGLKDGINYINDSTATLV"
     gene            complement(1016..2500)
                     /locus_tag="VI413_08845"
     CDS             complement(1016..2500)
                     /locus_tag="VI413_08845"
                     /inference="COORDINATES: protein motif:HMM:NF027726.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:2001070 - starch binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusF/SusE family outer membrane protein"
                     /protein_id="HEY6914771.1"
                     /translation="MKKFKLFSLCAFALSLLLVGCKTEEPPITPVSEDGWYISGEATS
                     FSTLGVVNMFEATTNENGDANADGSADNPARVGLFNKYVYLTSGKTFVISKVVGGVET
                     KYGSTDAYTYNPGGKYDQINANVTRGTLAADKTLSVSKTGLYQVAFDVNTNKVVICEI
                     THWGVIGGATPGGWGSNQVMNLVGTLSPDSNTYKVENVILTIDQYKFRYSDGWKVQIS
                     DTASMTVGGENIKINTNYGGALNALVAGGSNISNTANGVYTLTMTWKKSTGKWTATAV
                     KTGEYVPPTYPDNMYLVGEGTAYSWDAPATKAAAVMHKLAGGGTNEGIFWKVLFIEGG
                     KGFKISNANWTAPNLGFADVTSYDANGVAVTDNGGNMSVATSGIYTVVLDLRNSTKKV
                     SIMNAKVYGIGDCFGGYTADVAGNLFTTDLTAKTLISPALPAAGNIRIYVSHPWIAAW
                     WNSEFNVYGTEIQYRNNGGDQTAVPGTAGKVITLHFDDNTGSIN"
     gene            complement(2562..4097)
                     /locus_tag="VI413_08850"
     CDS             complement(2562..4097)
                     /locus_tag="VI413_08850"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6914772.1"
                     /translation="MKKYIFSVFALVLILSSCTDLSETLFDGIPESKFPENNNQTANI
                     GVGAYDPLKELMDNGGWWFCQEITTDEMVGPTRNTDWDDNGKWRLLQLHTWTNETEAI
                     VGMWERYYRGIAECNKTIEVQFNNDTTATASAASKDAIAKFLTLRSFYYWLLIDNYGD
                     VPYETSFANAVAKPFKTHRAIVYQRIVKDLVWSIPRLKKTSVHYSVSKGMAQMTLARL
                     YLNSKVYTGIDESAKAIPVLEDLIATGGYSLAVNVKDPFLEKNDACPENIFTAYYDGT
                     ENANKKPEFNLHMRTLGYQSNQTFKMTVGPWNGFATLEKHFLNYTSIDKRKDAYFLYG
                     PQKTFEGAPLLDAETNNLWDFSPTIPALSISESGGFTKSQVRHSGVRIQKYEVAVSCG
                     QSMANDYVFFRLTDAYLMLAELYANQNNAAKVQQYLDPIRTRAGLGSPAAYNLDAVKT
                     ERKMEMFYEGTRRQDMIRWGIFNNPWDCAWKLQINSSDNSLFPIPKKQIDANSNLSLA
                     PIN"
     gene            complement(4110..>4389)
                     /locus_tag="VI413_08855"
     CDS             complement(4110..>4389)
                     /locus_tag="VI413_08855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008774385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914773.1"
                     /translation="NIDGTPTASDYWLEDGSFLRLDNLTLGYNVPNTKKFGLNKLRVY
                     FTGSNLLTITGYKGIDPELSYSGVEFGLDNFNVYPKTRSFTLGLQLNF"
BASE COUNT         1287 a          862 c          758 g         1482 t
ORIGIN      
        1 attaccaggg ttgcagttga atcgttaatg taattgatgc catcttttag tccaacgggt
       61 cgggtctgac tattcacagg agccggaacg caaacataaa tagtatcggc taccgtttct
      121 ggtccaatag tagcttgtgc aattattgtg taatctatag tattagagaa agtgtatgaa
      181 taactcagtg ttgtagctgc agatgcagtt gtaacactcg ttccgtttat aaataaatta
      241 agatttgatg gtgttgatga tccaatttgc agattcataa cagttcccgg gctaacgctt
      301 tgattactgg ttggatttaa aaatgcaata tttaatccag actttaccaa atcgataaaa
      361 atatcccccc ctgttgttgt tttttcttgt ctgcttccat ctgcattccg aaataccaat
      421 gcaattttca gaatttcttc accagccgga ataccaaaat aacttctgat gccaggtgag
      481 atagttagtt tccatttatc attacccagt gacgtcagct tatttttcgt tgtgtttgcc
      541 tggcttagat ttgttgccgt cggccaggga gttacaacat atttccagtc ggaagaactt
      601 gtactggcag acgtaataac ccctacatga gcatatacat cgcctgtgta accctttaaa
      661 cctaagttcc catcaggtga ggctgcatct atcgtaattt cggtaatacc attatcttga
      721 gtaatgaatt gtggatttgt agttacaagt tgtgcccaac tccaaaccga aattgaaaga
      781 gttagtaaaa ttataattga ttttttcatg attttattag acaaagtgta atgtgaggtc
      841 ttggtaagag gccttcaatt tttaaggttc cacaaatata tacattatta cataggaata
      901 gtcaaattaa ctactgaaaa tatgtttttg caaaacaaac gtttgcagaa gaaagttttt
      961 tcgcgtaaca aaaaaagcac ggcaaaagcc gtgcttttta atattttaca cccagttagt
     1021 ttattgaccc agtattgtca tcaaaatgta aagtaattac ttttccggca gttccaggaa
     1081 cggctgtttg atcaccacca ttatttctat attggatttc agttccataa acattaaatt
     1141 ctgaattcca ccaggcagca atccatggat gtgatacata tattctaatg tttcctgctg
     1201 caggaagagc aggtgaaatt aatgttttag cagtaaggtc ggttgtaaat aagttacctg
     1261 caacatctgc tgtataccct ccgaagcagt ctccaatacc ataaacttta gcattcatga
     1321 tagaaacttt tttagtgcta ttccttaaat caagaacaac agtgtaaatt ccagaagttg
     1381 caactgacat atttcctcca ttatcagtta ctgccacccc atttgcatcg taactggtta
     1441 cgtctgcaaa gcctaagttt ggagccgtcc agtttgcatt tgagatttta aatccttttc
     1501 caccttcgat aaacaaaact ttccagaata taccttcgtt agttccacca ccggctagtt
     1561 tatgcatgac agctgcagct ttagtcgccg gagcatccca actgtatgct gttccttcac
     1621 ctaccagata catgttgtca ggataggttg gaggtacgta ttcaccagtt ttaacggctg
     1681 ttgcagtcca tttaccagta gattttttcc aggtcattgt caatgtatac actccatttg
     1741 cagtgtttga gatgttagaa ccacctgcaa caagtgcatt cagtgcacca ccataatttg
     1801 tgtttatttt gatgttttct ccacctacag tcattgatgc agtatcgctg atttgaactt
     1861 tccaaccatc ggaataacgg aatttatatt gatcaatggt taaaattaca ttttcaactt
     1921 tgtatgtgtt agaatccgga cttagagttc caactaagtt cataacctga tttgatcccc
     1981 aacctccggg agtggcgccg ccaataacac cccaatgggt aatttcacaa ataacgactt
     2041 tgtttgtatt aacatcaaat gccacttggt aaaggccagt ttttgataca gacagagttt
     2101 tgtctgcggc aagagtacct ctggtaacat tggcatttat ttgatcgtat ttgcctccag
     2161 ggttataagt atatgcatct gtagaaccat attttgtttc tactccacct acaactttgc
     2221 ttattacaaa agttttacca ctggtcagat acacatattt attgaatagt ccgacacgtg
     2281 ctggattatc agcagaacca tctgcgtttg catctccatt ttcattagtc gttgcttcaa
     2341 acatgttcac tacacctaac gtactaaacg aagttgcttc tccggaaatg taccaaccat
     2401 cttcagagac aggagtaatt ggcggttctt cagttttaca accaaccaat aataatgata
     2461 gtgcaaatgc acacaatgag aataatttga attttttcat gatggataaa tttaaaagtt
     2521 aataaattat attgattctt tctgtgtttg acttttttta attagttaat tggcgctaaa
     2581 cttaaattac tattagcatc aatttgtttt tttggaattg ggaaaaggct attgtctgaa
     2641 gagttaattt gcaatttcca tgcgcaatcc cagggattat tgaaaatacc ccaacgaatc
     2701 atatcctgac gtcttgtgcc ttcatagaac atttccattt ttcgttcagt ttttacagca
     2761 tctaaattat aagctgcggg acttcccaga cctgctcttg ttcggatggg gtctaagtat
     2821 tgttgtactt ttgcagcgtt gttctgattt gcatacagtt ctgcgagcat taagtatgcg
     2881 tcagtaagtc tgaagaaaac gtaatcattc gccatagatt gaccacaact tacagcaact
     2941 tcatatttct gaatccgaac tcccgagtga cgcacttgcg attttgtgaa tcctccactc
     3001 tctgaaattg ataaagctgg aattgtagga ctgaaatccc aaagattgtt cgtttctgca
     3061 tctaataatg gcgctccttc aaaagttttt tgaggtccat ataagaaata agcatcttta
     3121 cgtttatcaa tagacgtata gttcaaaaag tgtttttcaa gagttgcaaa cccattccat
     3181 ggacctactg tcattttaaa tgtctggttg ctctgatatc caagagttcg catgtgtaaa
     3241 ttaaattcag gcttcttatt tgcattttct gttccatcat aataagccgt aaatatattt
     3301 tcagggcatg catcattttt ttcaagaaac ggatctttta cattaacagc taacgaataa
     3361 ccgcctgttg caatcagatc ttctaatacc ggaattgctt ttgcagattc atctattccc
     3421 gtatacactt ttgaatttaa gtataatctt gctaaagtca tttgagccat tcctttactt
     3481 acagaataat gtactgatgt tttttttaat cttgggatag accaaactaa atcttttaca
     3541 atgcgttggt atacaatagc tctatgagtt ttaaatggtt ttgctactgc gttagcaaat
     3601 gatgtttcat aaggtacatc cccataatta tcaatgagta gccaataata aaaactccgt
     3661 agtgtcagga attttgcaat tgcatcttta gaggcagcgc ttgcagttgc agttgtatca
     3721 ttgttaaact gaacttcgat ggttttgtta cattccgcaa ttccacgata gtaacgctcc
     3781 cacattccca caatagcttc agtttcgttt gtccaggtat gaagttgcaa gagtctccat
     3841 tttccattat catcccagtc ggtgtttcgg gtaggcccaa ccatttcatc tgttgttatt
     3901 tcctgacaaa accaccaacc accattatcc ataagttctt tcaacgggtc ataagcacca
     3961 acacctatat ttgcagtttg gttgttattt tcaggaaatt tgctttctgg tattccatca
     4021 aataatgttt cactcaaatc agtacaacta ctaagtatta gcactagggc aaaaacacta
     4081 aatatatatt ttttcatatt gattaattgt tagaagttta attgaaggcc taaagtaaaa
     4141 ctacgggttt ttggataaac attaaagtta tcaagtccaa attcaactcc tgagtaactt
     4201 aattcagggt caattccctt ataaccggta attgtcaaca aattacttcc ggtaaagtag
     4261 actcttaatt tatttaatcc aaattttttg gtgttaggta cattataacc taacgttaag
     4321 ttatctagcc ttaaaaaaga gccatcttca agccaatagt cagaagccgt aggagtacca
     4381 tcgatattt
//
LOCUS       DATDNM010000521         4348 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_281689, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000521 DATDNM010000000
VERSION     DATDNM010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4348
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281689"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..717)
                     /locus_tag="VI413_08860"
     CDS             complement(<1..717)
                     /locus_tag="VI413_08860"
                     /inference="COORDINATES: protein motif:HMM:NF019120.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucuronidase"
                     /protein_id="HEY6914774.1"
                     /translation="MAGVANVGLDANWCGHLFAQSNWYAFGRLAWNNQMSSEKIADEW
                     IKLTFSQSSTGKSISANEWTENFLKPVKQMMLDSREAAVNYSMPLGFHHIMSANEHYG
                     PGPWWAPAGMRKDWTPPYFHQADSLGVGFDRTKSGSNAVSQYHEPVASMFSDVNTCLD
                     IYLLWFHHLPWDFKMKNGRTLWDDICYHYNTGLHQVQQFQKTWEKVQPYVDAERFGSV
                     KERLGMQISSAQLWNDGCILY"
     gene            complement(691..2001)
                     /locus_tag="VI413_08865"
                     /pseudo
     CDS             complement(691..2001)
                     /locus_tag="VI413_08865"
                     /inference="COORDINATES: protein motif:HMM:NF019130.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucuronidase"
     gene            complement(2056..>4348)
                     /gene="xyl3A"
                     /locus_tag="VI413_08870"
     CDS             complement(2056..>4348)
                     /gene="xyl3A"
                     /locus_tag="VI413_08870"
                     /EC_number="3.2.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007211516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009044 - xylan 1,4-beta-xylosidase
                     activity [Evidence IEA];
                     GO_process: GO:0045493 - xylan catabolic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="xylan 1,4-beta-xylosidase"
                     /protein_id="HEY6914775.1"
                     /translation="FDVFNATSDETRAKYNEAQQKGQENKRFLSLSVWTPNVNIFRDP
                     RWGRGQETYGEDPYLTSRMGISVVKGLQGPEDSKYKKLLACAKHFAVHSGPEWNRHVL
                     NVNDVNPRDLWETYLPAFKSLVQDANVREVMCAYQRLDDEPCCGNTRLLQNILREDWG
                     FRYMVVSDCGAIADFWQNHKVSSDATHAAAKGVLAGTDVECGFGYAFMELPKAVEKGL
                     ISESEIDTHLMRLLVGRFDLGEMDDAALVPWSKIPLSIVNSADHKKLALNISRESMTL
                     LQNRNNILPIPKNAGKIAILGPNAADEPLLWGNYNGTPNKTITILNGIKSKISGAKLI
                     YDRACDLTEDRITQSVIGQCSIDGKKGLKVTYWNNRNWEGNIVTTQQIVNSLKLSVLG
                     QHEFAEGVHLNNFSGKIETVYKPTKSGEIAFKLEACGELELFINGDSVSNIRMYRPLA
                     KRVLFKVEAGKEYKIEARFKQVDDWTAALSFDFGNEIPVKFDELINKLKGVDYVIFAG
                     GISAKLEGEEMPLDISGFKGGDRTDIELPAIQRECLKALKNAGKKVIFVNCSGSAMGL
                     VPETASCDAILQAWYGGEQGGQAVADVLFGDYNPSGKLPITFYKNVNQLSGFEDYSMK
                     GRTYRFMSDPLFPFGFGLSYTNFSIGDATLTKNVIAKTETVNITIPVTNTGKCNGTEV
                     VQVYIRKVNDIEGPLKTLKGFQRVEIESGKSKQVIIPLAPSSFEFYNWSQRKMQVDSG
                     EYEVLYGNSSDTKDLKMIKLTIQ"
BASE COUNT         1231 a         1007 c          761 g         1349 t
ORIGIN      
        1 ataaaggata caaccatcat tccatagctg agcactgctt atttgcatac ctagtctttc
       61 ttttacactg ccaaatcttt cagcatcaac ataaggttga actttttccc atgttttttg
      121 aaactgttgc acctgatgta atccggtgtt gtaatggtag cagatgtcat cccagagcgt
      181 acgcccgttt ttcattttaa aatcccatgg caaatgatga aaccacaaca agtaaatgtc
      241 cagacaggta ttcacgtcgc taaacattga agcaacaggc tcatgatatt gacttaccgc
      301 attgctgccc gattttgttc tgtcaaaccc aacgcccaag ctgtcggcct gatgaaaata
      361 aggcggtgtc cagtcttttc tcattcctgc aggagcccac cagggtcctg gaccatagtg
      421 ttcattggct gacatgatat gatgaaatcc aagtggcata gagtaattaa ccgcagcttc
      481 acgactatcc agcatcattt gtttcaccgg tttcaggaaa ttttcagtcc attcatttgc
      541 ggagatgctt ttacctgtcg acgactgact gaatgtgagt ttaatccatt cgtcggcaat
      601 tttttcactt gacatttggt tgttccaggc caaacgacca aaggcatacc aattagactg
      661 cgcaaaaaga tggccgcacc agttggcatc aagtcctaca ttggctacgc cggcaatggc
      721 agtgtatttt tgagggaaaa tactgccgtc ggtacaacga gccgttgtac ttcctttacc
      781 ttcctgatag gtatcgcttc tcaaaaactc ttcccacatg gtggcttaat aaaccatatc
      841 aacagaatga cccaaatatt cctgagtaat ttgtacttcg ggcataatgg acgttttttt
      901 catggctcca aagagtggac tgaatggttc gcgtggctga aaatcaattg gcccattctt
      961 aacctgaata atgacattat cgtgaaattt gccatcaagc ggcataaatt cgttgtaagc
     1021 ttgctttgcg cgatcttcgt ttgatgtgga atatacaaaa gcacgccaca taactatacc
     1081 accatagggt tttactgcat cggctaacag gttagctcca tcggcatggg tacgcccata
     1141 atcctgagga ccggcttgtc cttcgctatt ggctttgacc agaaatccac caaaatcggg
     1201 tatcagactg tatatttctt tcgctttatc ctgccaccat tttattactt ccggattcaa
     1261 cggatcggaa gagtttaagc cacccatggc tgatggtgaa gaaaatttca ccgaaatata
     1321 tacttttaca ccataaggac gaagaatatc cgcaattgct tttacacggt gtagtgtttc
     1381 tgctttcaac atatttggat tagaattcac attattgaga actgccccat taatgcccac
     1441 cgatgcattg gctcgtgcat attcctgcca caaaaccttg tctttttcgg tcacaacaaa
     1501 agcatcatcg cccttgcgcc agaaaataga gtgacccgag taacctcttt cgatagaacc
     1561 atccatgttg tcccaatgat tgagcacccg atgctcgtag gatggattac aaacttcatt
     1621 cgagattggt tctccggttt gttgacgacg caaaagttca tacgctccat ataatatgcc
     1681 gagttcggta tttgcttgta ttccgttagc actgaatttg aaaccgtcac ctttaatagt
     1741 gttatcattt ttttgcaaaa gaacgattct tgcaccactc ttaccttgcc acccttgttt
     1801 taattcatta atggctattg taagtgttgg agattttttg gtgcaaacaa cttttactct
     1861 tgcagaactt atattgccta accaaaggtt atggccattg tctgcctgaa taaactgaac
     1921 tgacaagatt aaaacaagta ctccaattat taacctccgg caaatatatg tagcatgatg
     1981 agagatcgga agagtttcca caacgcgagt attttctaaa tttatttttt cgattaatgc
     2041 cagactatta aactcttatt gaattgtcag tttaatcatt tttaaatcct tagtatccga
     2101 actatttccg tataacactt catattcacc cgaatcaacc tgcatttttc gctgagacca
     2161 gttataaaac tcgaaactgg atggtgcaag cggaataatc acctgtttgg acttaccgga
     2221 ttcaatttct acacgttgaa aacctttcag ggttttgagc ggaccttcaa tatcatttac
     2281 tttacggata taaacctgaa ccacttcagt accattacat tttcctgtat ttgttaccgg
     2341 aatagtaata tttacagttt cagttttagc aattacattt ttagtaagtg tagcatctcc
     2401 tatcgaaaaa tttgtatagc ttaatccaaa tccaaacgga aaaagaggat cggacatgaa
     2461 acgatacgtg cgacccttca tcgaataatc ttcaaaacct gataattgat ttacattttt
     2521 ataaaacgtg atgggtaatt ttcctgaagg attataatcg ccaaaaagca cgtcggcaac
     2581 agcttgtcct ccctgctcac caccgtacca agcttgtaaa atagcatcgc aactggctgt
     2641 ttcgggaact aaacccatag cagaaccgga acagttcacg aaaattactt ttttaccggc
     2701 atttttcaat gcttttaaac attcacgctg tatggctggt aattcaatat ccgtgcggtc
     2761 gccaccttta aaaccggaaa tgtcaagagg catttcttct ccttccagtt ttgccgatat
     2821 accccctgca aaaatcacgt agtcaacccc ttttagttta ttgatcagct catcaaattt
     2881 cacaggtatt tcatttccaa aatcaaaact caaggctgca gtccagtcat ccacttgttt
     2941 aaaacgagcc tcaatcttat attcctttcc tgcttctact ttgaataata cacgtttagc
     3001 caatggacga tacattcgta tatttgaaac cgaatcacca ttaataaaaa gttctaactc
     3061 tccgcatgct tcaagtttaa aggcaatttc tcctgattta gtcggtttat aaaccgtttc
     3121 tattttccct gaaaaattat tcaaatgcac tccttcagca aattcatgtt gaccaagcac
     3181 actcaacttg agagaattca caatttgttg ggtagttaca atatttcctt cccagtttct
     3241 gttattccaa tatgtcactt ttaaaccttt ttttccatca atggagcatt ggcctattac
     3301 tgattgtgtg attctatctt ccgtcaaatc acaagccctg tcgtaaataa gtttagcacc
     3361 agaaatcttt gatttaattc catttaaaat ggttatcgtt ttgtttggag taccattgta
     3421 atttccccac agaagtggct catctgcagc atttggacct agtattgcaa ttttccccgc
     3481 atttttagga ataggcaaaa tattgtttct attctgaagc aatgtcattg attctctcga
     3541 aatattcaat gccaattttt tgtggtctgc cgaatttact attgataaag gaatttttga
     3601 ccagggaacc aacgccgcat catccatttc gcccaaatca aaacgtccca ccagcaaacg
     3661 catcaagtgt gtatcaattt cggattcact gatcaatcct ttctcaacag ctttgggtaa
     3721 ctccataaat gcataaccaa atccacattc cacatccgtt ccggccaaaa cgcctttagc
     3781 cgctgcatgc gttgcatcag aagaaacctt atggttttgc caaaaatcgg caatagcgcc
     3841 acaatctgag acaaccatat acctgaatcc ccaatcttcg cgcaggatat tctgaagcag
     3901 acgtgtgttt ccacaacaag gttcatcatc aagccgttga tatgcacaca tcacttccct
     3961 gacattggca tcctgcacca acgacttgaa tgccggaaga taggtttccc ataaatccct
     4021 gggatttacg tcattcacat ttaggacatg acgattccat tcaggccccg agtgtacagc
     4081 aaaatgtttg gcacaagcca acagtttttt gtattttgaa tcttcaggcc cctgaagtcc
     4141 tttaacaacc gatattccca ttcgtgaagt cagatacgga tcttctccat aggtttcctg
     4201 accacgtccc caacggggat cacggaaaat gttcacatta ggtgtccaaa ccgacaaact
     4261 caggaagcgt ttgttttcct gccctttttg ttgtgcttcg ttgtatttag cccttgtttc
     4321 atctgatgtc gcattaaaaa catcaaaa
//
LOCUS       DATDNM010000522         5423 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_388128, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000522 DATDNM010000000
VERSION     DATDNM010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5423
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388128"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..4099)
                     /locus_tag="VI413_08875"
     CDS             complement(<1..4099)
                     /locus_tag="VI413_08875"
                     /inference="COORDINATES: protein motif:HMM:NF045042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter-associated beta strand
                     repeat-containing protein"
                     /protein_id="HEY6914776.1"
                     /translation="MKKNLLFQTITILLLYLSVLTPPLSAQRKMEKLDRGVVAVRNSA
                     GTFFVSWRFFATDAENTQFNLYAKKSGAAGFSKLNNTPLTQTNYTPSAGSVLTGTQLY
                     VTPVINGVEGTPSGIFTVPGTGFTSYRSAYLDITYNPAIDNLDISKYSTKFCWPADLD
                     GDGEYDFVVDRLSTDGLNSHKIQAYLRNGTLLWTVDMGPNVSICQGQDDMVIAYDMDG
                     DGKADVVIKSSDGTIFADGKGVNGSTTLDTDNDGIINYETQTVKNAPQYITVIDGLTG
                     KEKNSIEMKYPSNYTRTNKANFMGEGYYNLNGHMAIEYLDGKHPSVGFIYKTRELSQY
                     HFYYASAWGYNQAGQWVNQYNWERGYQDCAEGHGIRVADVDLDGRDELLDIGYGIKYD
                     GTLAFNAHITHGDRFRVGDIDPDRPGLETFAIQQNAMLGMLLYDSSTGTSITKKYLSA
                     VGDVGRGECMDVDSTHLGYEFYSTMANIYDAKGNTIYEGATPFPNEGVWWDGDLAREE
                     LTSADGNGFNADIRKYDINTHDFGNRLIEFAKMTGWQVKSEWGRRPAFFGDIAGDWRE
                     EVVLEKSGVASDGVTATCPGIVAFSTDYPTTKRIYCLMQNPAYRMQATTKGYYESAFP
                     DFYLGYNMPTPPVSAVQKAKLTWTSGTSFDKSSKSFVLEDEKSTAAFADGDDVMFDIS
                     GNNSATIQLPADLAPSKLWAMNPKGKDYVLSGAGKLTGTMELVKSMNGTFTLNGNHAY
                     TGKTTISEGILAVNGSLASPIEIRAKGSLAGNTIINGGITFDKALNIEGSRLMPGNGL
                     AADKLGKMTVNGNLNLNGKTNVEFDLIPSAAYKNDSLVVNGNLAVSGINNIVIKTQNG
                     TLPSGSFSLIKWSGTFTGTVDNFSIEGISGLPMSLVIENNTLKLVVNAVRTAADVTWK
                     GTISSDWDYLSENFTLNNAPTYFVNNDNVLFTDTATLKTVNLTDNLTTSKTTFTNVSS
                     AYVLKGAGGIIGTGDLVKTGKGLLDIQTVKNGYTGKTLLTNATVQVAALSDAGTVGSL
                     GSAAVDPANMVLTNSRLIVNAVSTNTNRGYTLVGNDTINIPKSNGVVTLTGLITGTGK
                     LVKNGAGQLNISGSVANTYTGGTIISGGNVGLSTLLMNTSAFGSGPITLESGGKISMY
                     YNTGDYNQKPTWNISIAQGQTGSLLASGRCVISGSISGAGTLNYTVPYVRADLVAGGA
                     NFTGKLVVINGGSGSFRITANTIGFPLANIHLSNVVDMGAYATTGASGTSASTTVKIG
                     SLSGIAGSTVGAGIWQIGSDNRDATFAGIFNAGATVIKSGTGTWTLTGASVMTSAFTV
                     SGGKVIINNTTGSPTGTGTVYVNNTGTLAGNGVVTGAVVINSGATL"
     gene            complement(4245..>5423)
                     /locus_tag="VI413_08880"
     CDS             complement(4245..>5423)
                     /locus_tag="VI413_08880"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914777.1"
                     /translation="SLPGITVTDTINNTHKVGYYLAGTTYDKIDNCYNRADFVMVPLG
                     SGRPTWVKFKTPWLNAGSYNVYISHRVSGDPKTNMGSITMDGKELYYPNEEMYGRWFK
                     SWAGANDKRQWNAKAHSGNMAMNYIGSVSVDNSGTHSLKINVLPENGATYNLDMLEFI
                     PVDMDSLSINTTAAVSMAKIYYPMFDWVGFSRMPGYDAAAIPTSYADFTNFAIPYQVT
                     DLTDWGTKFSHTIDSVGLIKKLIGSDEFVANYVTVYRAEDKWTRVSEGYSDSNAMSYT
                     CELPKGDYYYEAINFTDLADGAADFRTFINSGTFSVGPTGLINTSTSKIKAFAVGKTL
                     TVKGIEPGAKVVVVDITGRIVSNTIATSNVFTKELKQSIYIVKVISANETLKTKVIIK
                     "
BASE COUNT         1468 a         1189 c         1042 g         1724 t
ORIGIN      
        1 ttaaagttgc accggagttt attaccacgg caccggtaac aactccattt ccagccaatg
       61 ttccggtgtt gtttacataa acggttccgg ttcctgtcgg acttccagtt gtattattga
      121 ttattacttt tcctccgctg acggtaaatg ctgaagtcat aacacttgca cccgtcaatg
      181 tccatgttcc agtgccggat ttgataacag tggcgcctgc attaaatatg ccggcaaaag
      241 tggcatcgcg gttgtcgcta cctatttgcc aaatcccggc accaacagtt gatccagcaa
      301 ttcccgacaa tgaaccaatt ttaaccgtag ttgaagcact tgttccactg gctccggttg
      361 ttgcatatgc tcccatgtct accacattcg acagatgaat attggctaat gggaagccga
      421 tagtgttagc cgtaatgcgg aaacttccac ttcctccatt tataacgact aatttcccgg
      481 tgaagtttgc accgccggca actaaatcgg cccgaacata aggaaccgta tagttgaggg
      541 ttcctgcacc tgagatactt ccgctaatta cacaacggcc cgatgcaagc aacgatccgg
      601 tttgtccttg tgcaatgctg atgttccatg ttggtttctg attatagtcg cccgtattat
      661 aatacatgga tatttttcct ccactttcca gcgtaatagg accggaacca aacgcactcg
      721 tgttcattaa taaggtagag agccctacat ttccaccaga aataattgtt ccacccgtgt
      781 atgtgtttgc aacactgcct gagatgttta attgaccagc accatttttt accagttttc
      841 ctgtaccggt aattaatccg gtaagcgtta ccacaccgtt tgatttggga atattaatgg
      901 tatcattgcc cacaagcgtg taacctctgt tagtattagt tgaaacagca ttgacaatta
      961 atctggagtt agtcaatacc atattggcag ggtcaacagc tgccgacccc aatgatccta
     1021 ccgttccggc atcgctcaat gctgcaacct gtacagttgc atttgtaagt aatgttttgc
     1081 ctgtatatcc attttttaca gtttgtatat ccaacaatcc tttaccggtt ttcactaaat
     1141 cgccagtgcc aataattcca ccggcacctt tcagcacata agctgaacta acattggtga
     1201 aagtcgtttt tgaagttgtc agattatcgg tcaaattcac tgttttaagt gtagcagtat
     1261 cagtaaacaa tacgttatca ttgtttacaa aataggttgg ggcgttattc agcgtgaaat
     1321 tctcagacaa ataatcccaa tcggaactga ttgtaccttt ccatgtcaca tcagctgctg
     1381 tgcgaacggc atttacgact aatttcaatg tgttgttttc aattacaagt gacattggca
     1441 aaccgcttat accttcgata gaaaaattat cgactgtacc tgtaaatgtt cctgaccatt
     1501 tgatcagcga aaacgaaccc gaaggaagcg taccattctg tgtttttatg acaatattat
     1561 tgattcctga tactgccaga tttccattaa ctaccaatga gtcgtttttg tatgcagccg
     1621 aaggaatcag atcaaattct acgtttgttt taccatttaa attcaaattt ccattgactg
     1681 tcatttttcc caatttatct gctgctaatc cattgccggg catcaaacga cttccttcaa
     1741 tattcagtgc tttgtcaaag gtaattcctc cattaataat ggtatttccg gctaatgaac
     1801 ctttggcacg aatttcgatt ggactggcca acgaaccatt tacggccaga atgccttcag
     1861 aaatagtcgt tttacccgta taagcgtggt ttccgttcag ggtgaaagtt ccattcatag
     1921 attttaccaa ttccattgtt ccggttagtt tgccggctcc cgataacaca taatcttttc
     1981 ctttgggatt cattgcccaa agttttgacg gtgccagatc ggcaggtaat tgtatcgttg
     2041 ccgaattatt ccctgaaata tcaaacatca catcatcgcc atctgcaaac gcagccgttg
     2101 acttttcgtc ttccaacaca aagctttttg atgatttgtc gaaggatgtt cctgaagtcc
     2161 atgtcagttt agctttctga accgccgaaa ctggaggtgt aggcatatta tatcccagat
     2221 aaaaatcggg gaatgccgac tcataataac cttttgtggt ggcctgcatg cggtatgccg
     2281 gattttgcat caggcaatag attcgtttag tggttgggta atcggttgaa aatgcaacaa
     2341 ttcccggaca agtagccgta acaccatcag aagcaacacc tgatttttcc aatacaacct
     2401 cttcgcgcca gtccccggca atatcgccga agaaagccgg acgacgtccc cattccgatt
     2461 tcacctgcca accggtcatc ttggcaaatt cgattaatcg atttccaaag tcgtgtgtat
     2521 ttatatcgta tttacgaata tcagcattaa atccgttgcc atcggccgaa gtcagttctt
     2581 cccgtgcaag gtcgccatcc caccatactc cttcattggg aaatggggtt gcgccttcgt
     2641 aaattgtatt tcctttggca tcgtagatgt tggccatggt tgaatagaac tcatatccta
     2701 aatgggttga atctacatcc atacattctc cacgacccac atcgcccacg gcagataaat
     2761 acttttttgt aattgatgtt ccggttgatg aatcatacaa aagcattccc aacatcgcat
     2821 tttgttgtat ggcaaaggtt tctaagccgg gacgatcagg atcaatatca ccaacgcgaa
     2881 aacggtcgcc atgtgtaatg tgggcattaa aagcgagtgt tccgtcgtat ttaattccgt
     2941 atccaatatc cagcagctcg tcacgtccat ccaaatccac atcagctaca cgtatgccat
     3001 ggccttcagc acagtcctga tagcctcttt cccagttgta ctggtttacc cattgaccgg
     3061 cctggttata tccccatgct gatgcataat aaaaatgata ttggcttaat tcccttgttt
     3121 tataaatgaa tcctacgctg gggtgttttc catccaaata ctcaatagcc atgtgtccgt
     3181 tgaggttata atacccttca cccataaaat tggctttatt ggtacgcgta taatttgatg
     3241 gatatttcat ttcaatgctg tttttctctt ttcctgtcaa tccatcgatt acagtaatat
     3301 attgaggtgc attttttacc gtttgagttt cataattaat aattccatca ttgtcggtat
     3361 ctaatgttgt ggaaccattt actccttttc cgtcagcaaa aatagttccg tcactacttt
     3421 taataacgac atctgctttt ccatcgccat ccatatcgta ggcaataacc atgtcgtcct
     3481 gcccctggca gatactcaca tttggtccca tgtcaactgt ccaaagcagt gttccattgc
     3541 gtaaataagc ctgaatttta tgggagttaa gtccgtcggt agaaaggcgg tcaaccacaa
     3601 aatcatattc accgtcacca tctaaatcgg caggccaaca gaattttgtg ctgtattttg
     3661 aaatatccag gttatcgata gccggattat atgttatatc gaggtatgcg ctgcgataag
     3721 aagtaaaacc agttcccgga acagtgaaaa ttccgcttgg agtaccttcg actccattta
     3781 taacgggtgt tacatagagt tgggttccgg ttaagacaga ccctgctgag ggagtatagt
     3841 tggtctgcgt gagtggagtg ttgtttagtt tggagaaacc tgctgcacct gatttttttg
     3901 cgtataggtt aaattgtgtg ttttcagcat cagtagcaaa gaagcgccaa ctgacaaaaa
     3961 atgttccggc gctgttgcga acagcaacaa ctccacgatc gagtttttcc attttgcgct
     4021 gggccgaaag gggaggagtt aaaactgaca ggtacagtaa gagtattgtg attgtctgaa
     4081 ataataagtt ttttttcatt atttggtaat tttcagaaag aaatttaagt ctaactatta
     4141 gttcgatgca caagatgatt ttaagtttaa aagcatcttt ttctttttaa tgcaaaagag
     4201 gccgcctaca gcagacggcc tcatttgtga aagaatgaag tttattattt gataataact
     4261 tttgttttca gtgtttcgtt agctgaaatc acttttacaa tgtagattga ctgtttaagt
     4321 tcttttgtaa atacatttga agtagcaatg gtatttgaaa caattctacc ggtaatgtca
     4381 acaactacta ctttagctcc cggttcaatg ccttttacag taagtgtttt accaactgca
     4441 aatgctttga ttttagaagt gcttgtgttg attaatccag ttggacctac cgagaatgtt
     4501 ccagagttaa taaatgttct gaaatcagca gcaccatcag ctaggtcggt aaaatttata
     4561 gcctcataat agtaatctcc ttttggtaat tcgcaagtgt aactcattgc gttactatca
     4621 ctgtatcctt cagaaactct tgtccatttg tcttcggcac ggtaaactgt aacataattg
     4681 gctacaaatt cgtcggaacc aatcaatttt ttaattaaac caacgctatc gattgtatgg
     4741 ctgaattttg ttccccagtc ggtcaaatct gtaacctgat atgggatagc aaagtttgta
     4801 aagtcagcat agcttgttgg aatagcagca gcatcgtaac ccggcatgcg agagaaacct
     4861 acccagtcga acattggata ataaattttt gccatgctta cagcggctgt tgtgttaata
     4921 gataatgaat ccatatctac cggtataaat tcaagcatat ccaggttata agttgctccg
     4981 ttttcaggaa gtacatttat ttttaatgaa tgtgtacccg aattgtcaac acttactgat
     5041 ccgatataat tcatagccat atttcctgaa tgtgcttttg cgttccattg gcgtttgtca
     5101 tttgcacctg cccatgattt gaaccaacgt ccgtacattt cttcgtttgg ataatataat
     5161 tccttaccat ccatagtgat acttcccata tttgttttag ggtcgccact tactcggtgc
     5221 gaaatataga cgttgtaact accagcattt aaccatggtg ttttgaattt tacccatgtt
     5281 ggacggccac ttcccaaagg aaccatcaca aaatcagctc tgttatagca gttgtcaatt
     5341 ttatcatatg tagttcccgc taaataatat ccaactttat gagtattatt tatggtatct
     5401 gttactgtta ttcccggcaa tga
//
LOCUS       DATDNM010000523         3253 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1135123, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000523 DATDNM010000000
VERSION     DATDNM010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3253
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1135123"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VI413_08885"
     CDS             <1..396
                     /locus_tag="VI413_08885"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914778.1"
                     /translation="IDYGKLFPVVYELDYINNGGNDFKFLITEAARCIISLDLVSLKI
                     SVQKESQNSTENLKLGEEISIAANDGKIVVKSSSSVKKNFSVFTIDGRKIHSNSFVYD
                     SEISLPKGYYIVKITDGKGKQCQKTGILN"
     gene            complement(524..1534)
                     /locus_tag="VI413_08890"
     CDS             complement(524..1534)
                     /locus_tag="VI413_08890"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEY6914779.1"
                     /translation="MRVAIVGASGAVGQEFLRVLAERNFPLTELSLFGSSRSAGSVYE
                     YRGEKITVKELKHGDDFKPFDLVFTSAGASISKEYAEDITKFGAVMIDNSSAFRMDAD
                     IPLVVPEVNAADAKDRPRGIIANPNCTTIQMVVALKAIENLSHIKRVHVSTYQAASGA
                     GAAAMDELDLQYRQVLAGEQPTVSKFAYQLAYNLIPQIDVFTDNGYTKEEMKMYHETR
                     KIMHSDVEVSAMCVRVPALRAHSESVWLETEKPVSIEEARAAFESAPGVVMIDNPAEK
                     KYPMPLFLSGKDPVHVGRLRKDISNPNGITFWCVSDQIKKGAALNAVQIAEYLIEEGD
                     IK"
     gene            1783..>3253
                     /locus_tag="VI413_08895"
     CDS             1783..>3253
                     /locus_tag="VI413_08895"
                     /inference="COORDINATES: protein motif:HMM:NF013125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HEY6914780.1"
                     /translation="MKNLSLFFVFFVPFFCFGQVNESFLDGNFINNPIWTGTTSNFTV
                     NNAHQLQSQAASTSTSFLFTPSEAIDNAVWECWVKINYTTSSSNYAVVYLVSDQADIT
                     SGCNGYYVQIGGTNDEVSLFVQEGAKKTKIIDGADKRTDGNPIELRIKVTRDANGNFV
                     LYSKLASEADFVTEGTVQNKAVKASAYFGILFSNTTTTGSAYYFDDILVTGEKAIDKS
                     APEWTSFTLEQPNKLKLGFSEPMDFSKSAFSVDKEIGNPSSQNVSADKLSVILTFNSA
                     FEHGKIYNLQVSGLSDLAGNQLSDTTRSIGIVEPKVVGDLIINEIMFENPLNSLEYIE
                     IYNRSDKVLDVSGMVLTTRKTDGSLNTGIKIPVQTCLLPNGYIALCEDADSVRNYHNC
                     PVESNILSTEWTSLNNETASVVLTNATKDTVYDEVRYDAKWHHALVKNPKGVALERIN
                     PDLPSQDGASWHSAASEVNYGTPGYKNSQYRDITSDEKAA"
BASE COUNT          964 a          620 c          665 g         1004 t
ORIGIN      
        1 atcgattatg gaaaactgtt tcctgtcgtg tatgaattgg attatataaa taatggtggt
       61 aatgatttta aatttcttat tactgaagca gcccggtgta ttatcagttt agatttggtc
      121 agtctgaaaa tttcagtcca aaaagaatct caaaactcca ccgaaaattt aaaactaggc
      181 gaggagatta gcattgctgc caatgatgga aaaattgtag ttaagagttc ttcttctgta
      241 aagaaaaatt tttcagtttt tacaattgat ggaagaaaga ttcatagcaa ttcctttgtt
      301 tatgattcag agatatcgct tcctaaaggt tattatatcg tgaaaataac cgatgggaag
      361 ggtaaacaat gtcaaaaaac aggtatttta aattagacaa aaactgcatt cagattaaat
      421 ggcagttgca aaaaaataat tgtttcccaa tcatgtttta tgaaataaaa atcccccggc
      481 tattggttta gtcgggggat tattatgttg aactaaaggc ttattacttg atatctcctt
      541 cttctatcag atattctgcg atttgaacgg cattaagagc agcacccttt ttaatttggt
      601 cgctaacaca ccagaatgtg attccgttag ggttcgaaat atctttgcgc aaacgtccta
      661 cgtgtacagg gtctttacct gaaaggaaca atggcattgg gtatttcttt tcagccggat
      721 tgtcaatcat aactacaccc ggagcagatt cgaaagcagc acgagcttct tctatgctaa
      781 ccggcttttc agtttccagc catacgcttt cagagtgagc gcgcaaggca ggtacacgaa
      841 cacacatagc acttacttct acgtcagaat gcatgatttt acgtgtttcg tggtacattt
      901 tcatttcttc cttcgtataa ccgttgtcag tgaatacatc gatttgtgga atcaggttat
      961 aagccaactg ataggcaaat ttgcttactg ttggttgttc gcctgccaat acctggcggt
     1021 attgcaaatc aagttcgtcc atagcagcag caccggcacc cgaagcggcc tggtaagttg
     1081 acacgtgaac gcgtttgata tgcgacagat tctctatagc tttcaatgcc actaccattt
     1141 gaatagtggt acagtttgga ttagcaataa taccgcgtgg acggtcttta gcatcggctg
     1201 catttacttc aggcactacc aatggaatat cagcatccat acggaatgcc gatgaattat
     1261 cgatcataac ggctccaaac ttcgtgatat cttcggcata ttcttttgaa atacttgctc
     1321 cggcagaggt gaaaactaaa tcgaaaggtt taaaatcgtc gccgtgttta agctccttca
     1381 cggtgatttt ttcacctcta tactcataaa cactacccgc actgcgcgac gaaccaaaca
     1441 ggctcagttc tgtcaatggg aaattgcgtt cggccaacac acgcaaaaat tcctggccta
     1501 cggcgccact ggcaccaaca attgctactc tcattgtttt tgttttttaa gacctctaac
     1561 cctcaacggg aaaaaagagg tgaatttaga aaaattatac tcgtttttat tgtttgtatt
     1621 tttattcgta ataaataatc acaatgttaa tcttattgaa taattattta tatatttgta
     1681 gctcaaaaga aaaaaactaa ccggatttca acttattgtc cggacttgtg ttttcaaaaa
     1741 ttttcgcaaa agtaattcat tttaatagaa ttatcgcact ctatgaagaa tttaagcctc
     1801 tttttcgtgt tttttgtgcc gtttttttgt ttcggacaag tgaatgaaag ttttttggat
     1861 ggaaacttta taaataaccc gatttggacc ggtacaacat ccaattttac agtcaataac
     1921 gctcatcagc ttcaatctca agccgcctct acttccacct cttttctgtt tactccgtcc
     1981 gaagctattg acaatgccgt ttgggaatgt tgggtaaaga ttaattatac cacttcgtcg
     2041 tcaaactatg cagtagttta tcttgtttca gatcaggctg atatcacatc cggttgcaat
     2101 ggatattatg tacagatagg tggaacaaat gatgaggtgt cgttgttcgt tcaggaaggt
     2161 gcaaaaaaaa ctaaaattat tgatggggcg gataagcgta ctgatggaaa cccgatagaa
     2221 ttgcggatta aagtgacacg tgatgccaat ggaaattttg tgttatacag caaactggcc
     2281 agcgaagctg attttgtaac agaaggaact gttcagaaca aagccgtgaa ggcaagtgct
     2341 tatttcggaa tattgttttc gaacactact accaccggtt cggcgtacta tttcgatgat
     2401 attctggtga ccggcgaaaa agcgattgat aaatctgctc ctgaatggac ttcattcact
     2461 ctggagcagc cgaataaatt aaaactcggt ttttcggaac ctatggattt ctcaaaatct
     2521 gcgttcagcg tggataaaga aattggcaat ccatcttcgc agaatgtttc tgcagataaa
     2581 ttgtctgtta ttctgacttt taactctgca tttgaacatg gcaagatata taaccttcaa
     2641 gtgtccggat tatctgattt agcaggaaat caattgtctg acactacgcg gagtattggt
     2701 attgtagagc ctaaagtggt tggagatctg atcattaacg aaattatgtt cgagaatccg
     2761 ctcaattcac tggaatacat tgaaatttat aaccgttcag ataaggtact tgatgtgtcc
     2821 ggaatggttc tgactacccg aaaaacagat ggttctctga ataccggtat taaaattcct
     2881 gtacaaacgt gcttgttacc aaatggttac attgctttgt gtgaagatgc agattctgtc
     2941 cgaaattatc acaactgtcc ggttgagagc aatatcctaa gcaccgaatg gacgtcgctg
     3001 aataacgaaa ctgcttcagt cgtactgact aatgccacta aagatactgt ttacgacgaa
     3061 gttagatacg atgcgaaatg gcatcatgct ttggtgaaga atccgaaagg agtggctttg
     3121 gagcggatta atcccgattt gccatcacag gatggtgcct cgtggcattc ggctgcttcg
     3181 gaagtgaatt atggtacgcc tggttataag aattcgcagt atcgcgatat aacttcggat
     3241 gagaaagcag cca
//
LOCUS       DATDNM010000524         2760 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1243974, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000524 DATDNM010000000
VERSION     DATDNM010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2760
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1243974"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1629)
                     /locus_tag="VI413_08900"
     CDS             complement(<1..1629)
                     /locus_tag="VI413_08900"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030420 - establishment of competence for
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEY6914781.1"
                     /translation="MDFLQRTPFFRLLFPFIIGIVLYQYVELLQWGLLVVFGLSVLLV
                     LASLLIRAPKRQFQFRWLFGSGIFLFMLSLAYGLSTESEKDNAFDHLHHKGIYRVELI
                     SPPVEKAKSYLCKVDVLQYYDSSWKPARGQAILYFEKDKEASKLLFGDRLMLEAEFIE
                     PEQALNPDGFNYAAYLKRQGIGATSYISSGSWQFSGRNEAFSIRREADKWRNYLLAVY
                     RKFNIQGDEFAVLAALTLGYTDDLQPDLRASYSATGAMHILSVSGMHVGVVYVVIAFL
                     LGFMNKSQRLKVFKGLFIMLFLWAYAFLSGMSAAVIRATLMFSFVALASCFERKSQIY
                     NTIFMSALGMLLYNPNFLFDVGFQLSYSAVLSILFFQPVINKLYTPTNKFNRAIWGLF
                     SVSLAAQLGTAPFTLYYFQQFPNYFLLTNFIAIPLSTVVIYLAIGLLMTSFVPYLSVG
                     VAFLLKWSLWALNFVIVYIQNLPFSVSHISFDIKQTFVIFLAIFCFSAYYFSRKFQPL
                     FVGLVSLLLACVFNLQTNYETLTSKRMIVYAGQKN"
     gene            complement(1663..2241)
                     /locus_tag="VI413_08905"
     CDS             complement(1663..2241)
                     /locus_tag="VI413_08905"
                     /inference="COORDINATES: protein motif:HMM:NF019237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1566 domain-containing protein"
                     /protein_id="HEY6914782.1"
                     /translation="MRKVNISRFLFYVFLGFVLVNSHSCVEEKTVLKIGDSHQGGLIA
                     YILEPGDNGYVFGETHGLIAAPSNQSDGIQWYNGAYLITEATDSALFAGANNTDRIVQ
                     KQGTGNYAAKLCSDLVLNGYDDWYLPSIVELSLVRKNLNLLGFDLAKGDVFWSSTEET
                     DMYAATLWFKAPGASDLYPKYSQRAVRAVRRF"
     gene            complement(2286..>2760)
                     /locus_tag="VI413_08910"
     CDS             complement(2286..>2760)
                     /locus_tag="VI413_08910"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEY6914783.1"
                     /translation="TKPLDVHLMIVHPEKYISRFAKAGADVLTFHYETVENPLEVIEM
                     IKAEGIKVGITINPDVPVSVLEPYVDKVDLVLLMTVFAGYGGQKFIEESYTRIAELKE
                     MIERKNAHCVIEVDGGVNVQNAQKLFESGVNVLVAGSAVFNTENPKETIHNMLNV"
BASE COUNT          947 a          639 c          449 g          725 t
ORIGIN      
        1 attcttttga cctgcataaa caatcatccg tttcgaagtc aaagtctcat aatttgtttg
       61 cagattgaac acacacgcca acaaaagtga aactaaaccg acaaacaacg gctgaaattt
      121 tctactgaaa taatatgctg aaaaacaaaa aattgccaga aaaatcacaa aagtctgctt
      181 aatatcaaat gaaatatgcg acacagaaaa cggcagattc tgaatatata caattacaaa
      241 attcaacgcc caaagtgacc acttaagcaa aaacgccact ccaacagaaa gatacggcac
      301 aaatgaagtc atcaataaac ctattgccag ataaataaca actgtagata gcggaatagc
      361 tataaagttg gtcaataaaa aataattggg gaattgctgg aaataatata gcgtaaaagg
      421 agctgttcct aattgagctg ccaatgaaac tgaaaacaat ccccaaatcg cccgattaaa
      481 tttattagtc ggagtatata gcttattaat aacaggttgg aaaaacagaa tgctcaacac
      541 agctgaataa ctgagctgaa aacctacgtc aaacaaaaag ttgggattat aaagaagcat
      601 tcccaaagcc gacatgaaaa ttgtattata aatctgcgat ttacgctcaa aacatgaggc
      661 taatgcaacg aatgaaaaca tgagcgtggc tcgaattact gctgccgaca tccctgacag
      721 aaaagcgtac gcccacaaaa agagcatgat aaacaggcct ttgaaaactt ttaagcgttg
      781 tgacttattc ataaacccca acaagaaagc tatcaccaca tacaccactc caacgtgcat
      841 cccgctgact gacaagatat gcatggcgcc tgtggcactg taacttgccc gtaaatccgg
      901 ttgcaaatca tctgtatagc caagcgtaag agctgccaac acggcaaatt catctccctg
      961 aatattgaat ttccgataaa cagccaataa atagtttcgc catttatctg cctcacgccg
     1021 tatggaaaaa gcttcatttc tgcccgaaaa ctgccaactt ccagacgaaa tataactcgt
     1081 tgctcctatt ccctgccgct tcagataagc agcataatta aaaccatccg gattcaatgc
     1141 ctgttcgggc tcaataaatt cggcttccaa catcaaacga tcgccaaata ataatttcga
     1201 agcctcttta tctttctcaa aatagagaat tgcctgccca cgagccggtt tccacgacga
     1261 atcgtaatat tgcagcacat caactttaca caaatatgat tttgcttttt ctaccggagg
     1321 cgaaatcagt tctacccgat aaattccttt gtgatgcaaa tgatcaaacg cattatcctt
     1381 ttcactttcg gtacttaaac cataagccaa cgataacatg aacaaaaaaa ttccgctgcc
     1441 aaaaagccaa cggaattgaa attgtcgttt aggcgcacga atgagcagcg acgccaaaac
     1501 cagcaaaaca gacaaaccaa acacaaccaa caaaccccat tggagtaact ccacatattg
     1561 gtacaaaact ataccaataa taaacgggaa caacaatctg aagaaaggag tccgttgtaa
     1621 aaagtccata ggcacgcgtt tagtgggtca aacagtcaac agctaaaatc ttcgaacagc
     1681 tcttacagct ctttgggaat acttgggata caaatcggaa gcccctggag ctttaaacca
     1741 caaagtagct gcatacatat cagtttcttc tgtcgaactc cagaacacat ctccttttgc
     1801 taaatcaaaa cctaatagat taagattttt ccgaacaaga gacaattcta caatgcttgg
     1861 caaataccag tcgtcatatc catttagaac taaatccgaa cataatttcg cggcataatt
     1921 gccggttccc tgtttctgaa caatgcgatc agtgttatta gctccggcaa ataatgccga
     1981 atcagtcgct tctgttatca gataagcacc attataccat tggattccat cactttgatt
     2041 tgaaggtgca gcaatgagcc catgtgtttc tccgaacacg tacccattat cgcctggctc
     2101 taaaatataa gctatcaaac caccctgatg actgtctcca atttttaata ccgttttttc
     2161 ctctacgcac gaatggctat taactaacac aaatccaaga aaaacataaa aaagaaacct
     2221 ggaaatattt acttttctca taattcaaaa ttttactgga tttactggat tatatttaca
     2281 tgatactata cattgagcat attgtgaatt gtttctttcg gattttcggt attgaaaaca
     2341 gcgctacccg caaccagcac atttacacca ctttcaaaaa gtttttgagc attttgcaca
     2401 ttcactccgc catctacttc aatcacgcaa tgtgcatttt tgcgttcaat catttctttc
     2461 agttcggcaa ttcgagtgta gctttcttct ataaatttct gtccgccata gccggcaaaa
     2521 accgtcataa gcagtaccag atccacttta tccacgtaag gttccagcac gcttaccgga
     2581 acatccggat ttatggtgat tccaactttt atcccttccg ctttaatcat ttcaataact
     2641 tccaacggat tttcaaccgt ttcgtaatga aaagtcagta cgtcggcacc cgccttggca
     2701 aagcgtgaaa tatatttttc ggggtgaaca atcatcaaat gcacatccaa tggtttagtg
//
LOCUS       DATDNM010000525         4532 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1349670, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000525 DATDNM010000000
VERSION     DATDNM010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4532
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1349670"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..955)
                     /locus_tag="VI413_08915"
     CDS             complement(<1..955)
                     /locus_tag="VI413_08915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004289603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase 43 family protein"
                     /protein_id="HEY6914784.1"
                     /translation="MKKINSIISLFVGSIFLLTLSAQAKQARNPIIFADVPDMSMIRV
                     GNTYYMSSTTMHMAPGVPIMKSKDLVNWKLVNYAYNILDNVDAMNLDNGKSTYGKGSW
                     ASSLRYHNGTYYVSTFAQTTNKTYIYSTRDLEKGPWKTISFGPAYHDHTLFFDDDGRT
                     YLIFGSGKLRIVELKDDLTGVKEGTEQELIENASAPSGAIGLPAEGSQLFKIKGKYYI
                     FNITWPKNGMRTVVLHRADKITGPYEGRIALQDKGVAQGGLIDMPDGTWYSYLFRDYG
                     SVGRIPYLVPVKWEDGWPVIGVDGKVPDTLDLPASKGLIPGI"
     gene            complement(1243..1911)
                     /locus_tag="VI413_08920"
     CDS             complement(1243..1911)
                     /locus_tag="VI413_08920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914785.1"
                     /translation="MKKVLLSVVAVFLCLSSLFALDLPSGYTSIYDLNFETEQCPYVV
                     PGTTSYQFIGPSLGWGALTDHDLSTYKQLVYKLSYDATAGGKQIAIRIAINGGAKDPI
                     IVTLPADATTYTVSIPLEQYKDANGLIGLGGSVFYNGATHWSFTYAGTANDAAVTVDY
                     IAVTANSPSALSTVVADNPDAIVNVYNFTGSLVRKDVKESDATKGLKVGLYIVNGHKV
                     FVTK"
     gene            complement(2308..>4532)
                     /locus_tag="VI413_08925"
     CDS             complement(2308..>4532)
                     /locus_tag="VI413_08925"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase 43 family protein"
                     /protein_id="HEY6914786.1"
                     /translation="VNWEYCSNPLEKIESTDCYNLDGCNRYSHGQWASSLKYKNGTFY
                     LHFNTLDEGSYLLTATNPAGPWTKKKLSSSFYDAGHFLDDDGKTYIVSGINNLHITQL
                     DSNFNVVKDQAITYGTIQSGLDNSGTEGSHLYKINGYYYIYATTGGYYATQVAYRSSS
                     VFGPYDEKEVFNSDRIHQGALIQTQTGEWWTMLFADKGAYGRLPSLQPVTWTDNWPIV
                     GVSGKSVTTYQKPNVGKVYPMTSLPTNDNFRNYKLSPQWEWNHNPDNSKWSFVKRPGY
                     LRLYTANVTDSVQKAKNTLTQRILGFPANQNLSYGTVKLHINNMAEGDVAGLCVFQDP
                     YALIGVKVIGGQKKIFMLNAGTKTQVTGITLTDSVVYFRAIANYSTSKADFYFSTDNI
                     TYTQVGTSLDMKYNLSVFVGNRFCLFNYATSAIGGYVDVDWFSTEKDFSEDKFYDNSF
                     IGYSEDALTLSELKTENTNINLLTGSSKSFLITALYNDGHTEDVTLSATYTNSNPDVL
                     TVKNGQLITKATGSATLTVSYQGGMGAAKTITLNVNSTYFPLTKDLFNPSIYATGTFN
                     EATHTLVTGQYGFGGWTYSAGIDLSGYKYLVMQLSSATSSGAVLRIFDENSYWSKPAE
                     TSFGSGKQAVINLTTATKSGTTTKITPSHIYIAGIWSMGGSPIVISDAYVTNNSDYSK
                     PTAVENVTSGYNENEPVDVYTIMGVRVRSKVLRKEATKGLVGGLYLVGKQKVLVIRTY
                     "
BASE COUNT         1409 a          937 c          764 g         1422 t
ORIGIN      
        1 caatacccgg aattaaacct ttgctggcag gtaaatcgag cgtatcggga accttgccat
       61 caacaccaat taccggccaa ccatcttccc acttaaccgg aacaagatac ggaatacgac
      121 ctaccgaacc gtaatcacgg aaaagataag aataccaggt tccatcgggc atatcaatga
      181 gtcctccctg agcaacacct ttgtcttgca acgctattct tccttcatat ggacctgtta
      241 ttttgtcggc tctatgcaga accactgtgc gcataccatt tttgggccat gtaatattaa
      301 aaatgtagta tttgccttta attttgaaaa gttgggatcc ttcagccgga aggcctatgg
      361 cacccgacgg agcacttgca ttctctatga gttcctgttc tgtgccttcc tttacgcccg
      421 tgagatcgtc tttcagttca actatcctga gtttgccgga accaaaaatc aaatatgttc
      481 gtccgtcgtc gtcgaaaaac agcgtgtggt cgtgataggc aggtccaaat gaaattgttt
      541 tccaaggtcc tttttcgaga tccctggtag agtagatata cgttttattg gttgtttgag
      601 caaatgtgga aacataataa gtcccattgt gatagcggag gctactggcc caagaacctt
      661 taccataggt gcttttgcca ttatcaaggt tcattgcatc aacattgtcc agaatattgt
      721 atgcataatt tacgagtttc caattgacaa gatcttttga cttcataatg ggaactcctg
      781 gagccatgtg catggtagta ctcgacatgt aatacgtgtt gccaacacga atcatcgaca
      841 tatcaggtac atctgcaaaa atgatcggat ttcgagcttg ctttgcttgt gcagaaagcg
      901 tcaataagaa tatcgatcct acaaataagg aaatgattga attaatcttt ttcattgaat
      961 atttatgaat tagtggaagt aatctcaatg acagacagca gtgaaaataa tctaacagca
     1021 ctcactctat caaatctata actgcaacta tttttatgaa ctaaatttct gtagctgttt
     1081 attaaaacaa ttatcctcaa taaacttcac agtaaaaaac tttgacttag aaataaggct
     1141 gttcaaaaaa atcacttttt cgaacagccc cattagatta ccagattatc cggcagtttg
     1201 cttatctaac aattattttc tttaccaaaa ttgtcaatcg acttattttg ttacgaaaac
     1261 tttatgtcca ttcacaatat aaagtcctac ttttaaccct tttgtagcat ctgactcttt
     1321 aacgtcttta cgaaccaaac taccggtaaa attatataca ttcacaatcg catccggatt
     1381 atctgctaca actgttgata atgccgatgg tgaattagct gttacagcaa tataatcaac
     1441 tgtcacagca gcgtcatttg ctgtaccagc gtatgtaaat gaccaatgcg ttgcaccatt
     1501 ataaaaaacc gaaccaccaa gtccaatcaa accgttagca tctttatatt gttccaaagg
     1561 aattgatact gtataagttg ttgcatcagc tggaagagta acaattatag gatctttggc
     1621 tcctccattt atcgcgatac gtattgctat ttgctttcct cctgccgttg catcatagct
     1681 taatttataa acaagttgtt tgtaagttga caaatcatga tctgttaaag caccccaacc
     1741 taaagaagga ccaataaatt gataacttgt tgtaccagga acaacataag gacactgttc
     1801 tgtttcaaag tttaaatcgt aaatagaagt gtatccactt ggaagatcta atgcaaataa
     1861 tgaagagaga cacaaaaaaa ctgcaacaac tgaaagtaaa acttttttca taacatttaa
     1921 tttttgaaat aaataatagt aaataattta ttgcaaaaat atgtgcagtt tgaaactcta
     1981 ttgttccaat aattgataat tggtttctaa ttttgagtat aatttcatga aaataaggca
     2041 accgcacctt tattttgtaa aatatataaa atcaaagtag tattaggttt atttagcaac
     2101 aacatcttat gtctattcaa tttatattat tgtcccactt aaatagaata atgtttatca
     2161 acacaaactg aacaaacatt gacaagcata caatactgcg agaatattaa cactacttac
     2221 ctttaaaatc tactattacc agatgttttg aagttcttag gtaaaggatc ttatttcact
     2281 ccacaacaat tgacaaataa cgaactttta gtaagtacgt atcaccaata ccttttgttt
     2341 accaaccaga tacaaaccac cgaccaaacc ttttgtagct tctttcctta gcacctttga
     2401 acggacccga acacccataa tagtatacac atcaactggt tcattctcat tatatccaga
     2461 tgtcacgttt tcaacagcag tcggtttaga ataatcgcta ttattcgtaa catatgcatc
     2521 actaatgact attggagaac ctcccataga ccatattccg gcaatgtaaa tgtgcgaagg
     2581 tgtaattttg gttgtcgttc cggatttggt ggcagtggtc agatttataa ctgcctgttt
     2641 acccgatcca aaagaagttt cagcaggctt cgaccaataa ctattttcgt caaatatcct
     2701 gagtaccgct ccacttgatg ttgcactgct taattgcatt acaagatatt tataacccga
     2761 caaatcaata ccagcactat aagtccaccc tccaaaacca tactgacctg taactaatgt
     2821 atgggtagct tcattaaatg ttccggttgc atatattgac gggttaaata aatctttcgt
     2881 caaagggaaa tatgttgagt ttacgtttaa tgtaatggtt ttcgctgcac ccataccacc
     2941 ctgataagac actgtcaaag tcgcacttcc agttgctttt gtaattagct gcccattttt
     3001 aaccgtcaaa acatccggat tggaattggt atatgttgcg ctgagagtaa catcttcggt
     3061 atgcccatcg ttataaagag cagttatcaa aaaacttttt gaacttccgg tcagtaagtt
     3121 gatattcgta ttctctgttt ttaattcgct cagagttaga gcatcttcgc tataaccaat
     3181 gaatgaattg tcatagaatt tatcctcaga aaaatctttc tcggtcgaga accagtcaac
     3241 atctacgtaa ccacctattg ccgatgttgc ataattgaac aggcaaaatc tgttccccac
     3301 aaagactgat aaattatatt tcatatccaa cgaagtacct acctgtgtat atgtgatgtt
     3361 gtcagtgctg aaatagaaat cagccttact tgttgaataa ttggcaattg cccgaaagta
     3421 aacaacacta tctgtaagag ttattcctgt cacttgtgtt tttgttcctg cattcaacat
     3481 gaatattttt ttctgacctc caattacttt cacaccgatt aaagcgtatg gatcctgaaa
     3541 tacgcataat ccggccacat cgccttcagc catattgttt atgtgcagct ttacagttcc
     3601 atatgacaag ttctggttag ccgggaatcc gaggattctt tgggttaatg tatttttagc
     3661 tttctgaacg ctatcagtta cattagctgt gtataaccga agataccccg gacgtttaac
     3721 gaaagaccat ttagaattat ccggattgtg attccattcc cattgaggag acaatttata
     3781 atttctaaaa ttatcattcg ttggaagact ggtcattgga tatacttttc caacatttgg
     3841 tttctggtaa gtagtaacac tcttgccact tactccaaca ataggccagt tatcagtcca
     3901 tgttaccggt tgcagactcg gcaatcgacc ataggcacct ttatcggcaa agagcatagt
     3961 ccaccactca cccgtttgtg tttgtattaa agctccctga tgaatacggt cactgttaaa
     4021 cacttctttc tcatcgtaag gcccaaaaac agaagaggaa cggtaagcaa cctgagtagc
     4081 atagtaccct cctgtagtag cataaatata ataatacccg ttaattttat aaagatgact
     4141 cccttcagtt cctgagttgt ctaaacccga ttggatagta ccatatgtta tagcctgatc
     4201 cttaaccaca ttgaagttgg aatcgagttg tgtgatatgc aaattattaa taccagaaac
     4261 gatgtacgtt ttaccgtcat cgtcaaggaa atgaccggca tcgtagaaag aagaagacaa
     4321 cttcttcttt gtccatggac ctgcaggatt tgtagctgtc agcaagtaac ttccttcatc
     4381 taatgtattg aaatgcagat aaaaagtacc attcttgtat ttcagactac ttgcccattg
     4441 tccgtgactg taacgattgc aaccatcaag gttataacaa tcggtcgatt ctattttctc
     4501 caacggattg ctacagtatt cccaattgac ta
//
LOCUS       DATDNM010000526         2818 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1562960, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000526 DATDNM010000000
VERSION     DATDNM010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2818
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1562960"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..>2818
                     /locus_tag="VI413_08930"
     CDS             126..>2818
                     /locus_tag="VI413_08930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY6914787.1"
                     /translation="MTISDIALKRPIGSIVLSLIIILMGVVGFNFLAVRLYPAIDPPI
                     ITVQTSYTGANSEIIESQITEPLEKAINGIEGVKSISSQSAIGSSNITVEFELGADLE
                     KAANDVRDKVSQGMRSLPQDIDAPPIVTKADANSEPIIMLTVQSSTMNTIELSDYAET
                     VLQEKLQTIPGVSSVGIYGQQRPAMRLWFDAKKMAAYNLTAADVNVALQKENVEMPGG
                     KIRGNTTELIIKTRGRLITEDDFNNLIIKQTDNQVIRLSDIGEAVLGPQNEESGATIN
                     GNVGVNLAIIPLPGANNIEISDEFNKRLEQIKLTAPKGLDLNVGRDKSTFVRQSVKDV
                     LETLMIAIFLVVLIIFLFFRNWIIALRPLIDIPVSLIGTFFIMYIFGFSINVLTLLGI
                     VLATGLVVDDGIVVTENIFKRIEQGMDKWKAAFKGTREIFFAVISTSLTLAIVFIPVI
                     FLQGFTGRLFREFGIVVACAVLISALVSLTLTPVLNVLLGGSATHHSKFYIASEPFFT
                     GMEKKYRRYLGFFIQNKWISFCIVALCVVIIISLSFSLKSELAPMEDHSYIRTSITAP
                     EGTEYTTTKEITDKLAKINLERIPEAKYTLARYGGGGGGSNSTGNTGFLIIFLSDPAE
                     RKASQKDIYQKLTKIYDSIPEARIIASQEPTISTSNSRGLPVQYVLQNLDFEKIKSTL
                     PKFLDEARNSHVFSNVDVDLKFNKPEINLSVNRLKATSLGVNERDVSDALNLAYSGSR
                     YGYFLRNNRQYYVIGQVARDDRSTPADISSLYVRSNTGNRIQLDNLVDIKENSNPPIL
                     YHFNRYKSATVSANLAEGKTLGEGIEEMQRIADKLLDESFTTALNGPSRDFAESNSNI
                     SFALILALLLIYLILAAQFESFRDPFIIMLTVPMAIAGAMLS"
BASE COUNT          830 a          556 c          613 g          819 t
ORIGIN      
        1 attcgccaat caaccaacat tgaagttctt gaaggaattc aggcaggcga cacggttatt
       61 acttcaggtc ttcagttttt aaaagaagat tctaaattaa attactctac aattaccagc
      121 aagctatgac catatcagat attgcactta aacgcccgat aggttccatt gtcttgagtt
      181 tgataatcat actgatggga gttgtcggat ttaatttttt ggctgtacgc ttgtatccgg
      241 ccattgatcc acctataatt actgttcaaa caagttatac cggagcaaat agcgaaatta
      301 tagaatcgca gattaccgaa ccgttggaaa aagccattaa tggcatagaa ggcgtaaaat
      361 ccatttcatc ccaatcggcc attggctcta gtaatattac tgtagaattt gaattgggtg
      421 cggatttgga aaaagctgcc aatgatgtac gtgataaagt atcgcagggt atgcgtagtt
      481 taccgcagga tattgatgca ccaccaattg ttaccaaagc cgatgcgaat agtgaaccga
      541 ttattatgct cacggttcag agtagtacaa tgaatactat tgagcttagt gattatgctg
      601 aaactgtttt gcaggaaaaa cttcaaacta ttcccggcgt aagttctgtt ggaatttatg
      661 gccaacaaag gccggctatg cgactttggt ttgatgcaaa aaaaatggca gcctacaatc
      721 tgactgcagc cgatgtaaat gttgcgttgc aaaaggaaaa tgtagaaatg cccggtggaa
      781 aaatccgcgg aaacactact gaattaatca ttaaaacccg gggccggttg atcacggaag
      841 acgatttcaa caacctgatc attaagcaaa ccgacaatca ggttattcga ttgagtgata
      901 ttggtgaagc ggtccttggt cctcagaacg aagaatcagg tgctaccata aacggaaatg
      961 tgggtgtcaa tctggctatt attccacttc cgggtgccaa taacatagaa atttccgacg
     1021 agtttaataa acgactggag caaataaaat taactgcacc caaaggactg gacctgaatg
     1081 tcggacgcga taaatctact tttgtccgcc aatcggtaaa ggatgtgctt gaaacattaa
     1141 tgattgccat ttttctggta gtcctgatta tttttttgtt tttccgaaac tggattattg
     1201 ccttacggcc gcttatcgac atacctgttt cgcttatcgg gacatttttt atcatgtata
     1261 tttttggctt ctccatcaat gtgcttacgt tattgggaat cgttctggca acgggattag
     1321 tggttgacga tggaattgtt gttacagaaa acattttcaa gcgaatagag caagggatgg
     1381 acaaatggaa agcagcattc aaaggcacgc gcgagatatt ctttgctgta atttctactt
     1441 cgctcacctt ggctattgtg tttattccgg ttatattttt acaaggtttc accggtcgtt
     1501 tattccgcga attcgggata gttgttgctt gcgccgtatt gatttcagct ttggtatcat
     1561 tgacacttac acccgttctg aatgtattgc ttggaggttc tgccactcat cattctaaat
     1621 tctacatagc ctcagagcca ttctttacag gaatggagaa aaaatacagg cgctaccttg
     1681 gcttctttat tcagaataag tggatttcgt tttgtatcgt agcattgtgt gtggtgataa
     1741 tcatttcttt atcatttagc ctgaaatcgg aactggcccc aatggaagat cacagctata
     1801 tccgtacgag cattactgct cctgaaggca ccgagtatac aactactaag gaaattaccg
     1861 ataaacttgc taaaattaat ctggagcgga ttcctgaagc aaaatatacg ctggcgcggt
     1921 atggcggagg tggaggtggt tcaaattcaa ctggaaacac cggctttctt attatctttc
     1981 tttctgaccc ggccgagcga aaggccagcc agaaagacat ttatcagaaa ttgacgaaaa
     2041 tatacgactc aatacccgaa gcacgaatca ttgccagtca ggaaccaaca atctcgactt
     2101 ctaattcacg tggcttgcct gtacaatatg tactccagaa cctcgatttt gagaaaataa
     2161 aatcgacctt gcccaaattt ctggatgaag cacgaaatag ccatgtattc agcaacgtgg
     2221 atgtagattt gaaattcaat aaaccggaaa taaacctgag cgtaaatcgg ttgaaagcaa
     2281 ccagtttggg agttaatgaa cgtgatgtat cagatgcact gaacctggct tacagtggta
     2341 gccgatatgg ttattttctg aggaataaca ggcagtatta tgtgattggg caagtggcac
     2401 gcgatgacag aagcacacct gctgatattt catcattgta tgtccggtca aataccggaa
     2461 acagaattca gctggacaat ttggttgata taaaggaaaa tagcaacccg cctattttgt
     2521 atcacttcaa ccgttacaaa tcggcaactg tttcagccaa cctagccgaa gggaaaacgc
     2581 tgggcgaagg aattgaagaa atgcaacgca ttgccgataa gttattggat gaaagcttta
     2641 ctacagcgct taacgggccc tcgcgtgatt ttgcagaaag caattcaaat atatcatttg
     2701 ctttgattct tgcattgttg ctcatttatc tgattttggc agcacagttt gaaagcttcc
     2761 gcgatccgtt tatcattatg ctcactgttc cgatggctat agcgggagcg atgctttc
//
LOCUS       DATDNM010000527         2500 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1776595, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000527 DATDNM010000000
VERSION     DATDNM010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1776595"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..829)
                     /locus_tag="VI413_08935"
     CDS             complement(<1..829)
                     /locus_tag="VI413_08935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY6914788.1"
                     /translation="MKQLLFRNGDIFPTLGLGTWLSRKNEVYDAVLEAVRLGYRHIDC
                     AYIYQNEVEIGKALKFCIATGMVTREELFITSKLWNSEHAPERVEAAIRKSLADLQLE
                     YLDLYLIHWPIAFKTGREQAKDAADLLSLEEMPLEITWQAMEKVQESGFARHIGVSNF
                     NIPKLKKLIDTAKVKPEVNQVELHPYFQQNELVQFCQKNGILVTAFSPLGSRRLINED
                     DSIAKNETILRIAEKHSCLPTEVILAWGMKRGTAVIPKSVNSTRIRDNYESIYVNLDE
                     "
     gene            complement(1385..2500)
                     /locus_tag="VI413_08940"
                     /pseudo
     CDS             complement(1385..2500)
                     /locus_tag="VI413_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005652358.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
BASE COUNT          763 a          516 c          430 g          791 t
ORIGIN      
        1 gttcatctaa gtttacataa atcgattcat aattatcacg aattctggtt gagtttacag
       61 acttgggaat gactgccgtt ccacgtttca tgccccaggc caatattacc tcagtaggca
      121 ggcaagaatg cttttcggca attctaagta tcgtttcatt ttttgcaata ctatcatctt
      181 catttattaa acggcgactt cccaaaggtg aaaatgctgt taccaaaatg ccatttttct
      241 ggcaaaactg cactaattca ttttgctgaa aatatgggtg taactcaacc tgattcactt
      301 ccggttttac ttttgccgta tcaatcagtt tttttaattt ggggatatta aaattagaaa
      361 ctcctatgtg cctggcaaac cccgactctt gaactttttc catggcttgc catgttattt
      421 ccaaaggcat ttcttccaat gaaagtaaat ctgctgcatc tttcgcttgt tcacgccctg
      481 ttttaaaagc tatcggccag tgaatcaaat acaaatccag gtattccaac tgtaaatcgg
      541 caagcgattt ccgaattgct gcttctactc tttccggagc atgctcacta ttccaaagct
      601 tagatgtaat aaaaagctct tcacgagtaa ccattcctgt ggcaatacaa aattttaatg
      661 ccttaccaat ttccacctca ttctgataga tatacgcgca atctatatgc ctgtatccaa
      721 gacgtactgc ttcaagaaca gcatcgtaaa cttcgttttt tctggacaac caggttccca
      781 atccaagtgt tggaaatata tcgccgtttc gaaataaaag ttgcttcata ctattgcatt
      841 ttttaattta aaacactaaa attgaataga ttgtttacag ttaaacagaa aatggacacg
      901 aagatattat cgcaaaaatc gaaaataccg ctttaaatcc tctggattta cctaaactca
      961 agacaattta gttatataaa caaaacacaa tttaaccaca aaagtaacaa tatataacag
     1021 tcagactcta actaatccat ttttgtagtt gtttttacaa tgaagcgtag ttgtttgttc
     1081 tacacaaaat acaaaacact aatttattat attatgagtt acatttacat tttggggtat
     1141 gtgtttgttg gggcactgat aattggatta ttctattcaa ttatcagaat tctaattagt
     1201 tttgttcaga attttatgtc gaaagacaaa cacaacagtt ttcatttgca tcacgaacac
     1261 taatacccat taaaaaacat ttgatttgtt gaacttcatg ttggctgaac ttcttaaagg
     1321 tataaaataa acaaggcgtt gaataaattt caacgccttg tttatttcta tagtaaactg
     1381 cttgttacac aagcttagcc aatgcttctt taatccatcc aaatgctttt accagatttt
     1441 cgtcggaagt tgcatacgac atacgaatac agttaggagc accaaatgca ccaccaccca
     1501 cgcaagcaac gtgaccttct tccaacagat acatagccag atcgcctgag ttagcaatta
     1561 attttccgtt gtacgattta ccgaaaaacg agctgcaatc aggaaagata taaaatgcac
     1621 cttgtggatc attggtaatc aaacccggaa tttcacgtgc caaaccaaca accagatttt
     1681 tgcgacgctc gaaagccaca cgcattgttt ccacacagct ctggtcgccg gtgtaagctg
     1741 cctctgctgc tttttgggtt attgaacttg gtcctgaggt atattgtcct tgcaaggtat
     1801 tacaagctga agcaatccat tttggagctg caatccagcc taaacgccag ccggtcatgg
     1861 cataaccttt agaaacaccg ttgataataa taacgcgttc gcgaacattt tcgaactggg
     1921 caatactttc gtgggtaccc aggtaattga tatgctcgta aatttcatcg gaaagaatat
     1981 agatatttgg atatttagcc aatacatcgg ctaatccttt taattcttct ttgctataaa
     2041 cacttccggt tgggttggaa ggtgaacaaa gaatgatagc ttatgatttt ggagtgatag
     2101 ctgcttctaa ttgcgcaggt gtaattttga aatcctgctc gataccggca tacacttcga
     2161 cagttgtacc atcggcaatt ttcaccattt caggatagct aacccagtaa ggagccggaa
     2221 cgataacttc gtcgcctttg ctgataatag ccataattac attacaaaca gattgtttag
     2281 caccgttaga acatacaatt tcttcgggtt tatagtctaa gccattttcg gcttttaatt
     2341 ttgcacaaat tgcattgcgc aatgcaggat atccgggaac gggtgaataa aacgagaagt
     2401 tattatccac agcttgcttg gcagcttctt taacatggtc aggtgtatta aagtcaggtt
     2461 caccaacact gaggttaatt acatcaaagc cctgagcttt
//
LOCUS       DATDNM010000528         2258 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_708404, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000528 DATDNM010000000
VERSION     DATDNM010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_708404"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1572)
                     /locus_tag="VI413_08945"
     CDS             complement(<1..1572)
                     /locus_tag="VI413_08945"
                     /inference="COORDINATES: protein motif:HMM:NF017263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HEY6914789.1"
                     /translation="MIEIKKIRIPGIFTLVQILIGFSSGSFIAAAPPKTEVVFTDYYP
                     AINEVIDDEGFKHPGVGLTSELLENVRQKVRQKIEPWNTYFNAMLESTAASRTVGSRN
                     QNASDPSQPLSNSFNSKPFNGTFIGDGLTAYTQALLYFITGDEQYRRNAMHIIRIWSQ
                     MDTSKYKYFSDAHIHTGIPLNRMVMAAEILRYTNCQSEDLKWTDTDTKNFVKNLITPV
                     VDNFQYSPNRFMNQHLYPLIGAMSGYIFTGNRSRYNEAVEWYTVNSTANNQGYNGSIK
                     QLFRWVDQEDIVGKKYGKGKPVPGHVQHVEMGRDQAHGGGDLTNAAIINRMLLAQHTT
                     VDPVKGTVSYAPDAVGPYEFLNDRMLAAANYFWQFMLGYDTPWTPVAYTISPEGIVRD
                     TYTSISANYKGRFLTANFWDFYSYYTYSRKLDVSKIAPYFYEAFTKKLTPDGKGWNNV
                     DGGTDFWLFLPKEAEKDSIALLPHNNSAGTLLELEDRYTKLDNNSTTIHERNASFIRF
                     NATEAGSKIAIMGFGN"
     gene            2047..>2258
                     /locus_tag="VI413_08950"
     CDS             2047..>2258
                     /locus_tag="VI413_08950"
                     /inference="COORDINATES: protein motif:HMM:NF019556.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914790.1"
                     /translation="MIEKTGDTLLQKRVKYMVDGLGDCQQKLGGNYLSAFPESDFTTL
                     ENNSANHCAKEKRFCLVCIPTPIYLW"
BASE COUNT          688 a          468 c          391 g          711 t
ORIGIN      
        1 attgccaaaa cccataatcg caattttact tcctgcttcg gttgcattga aacgaataaa
       61 ggaggcattt ctttcatgga ttgtcgtgga attattatcc agttttgtgt aacggtcttc
      121 taattcgagc aaagtaccgg cagaattatt gtggggcaac aatgcaatac tatctttttc
      181 agcttcttta ggtagaaata gccagaaatc ggtaccacca tccacattgt tccatccttt
      241 tccatcgggg gttaattttt tggtgaatgc ttcgtaaaaa taaggtgcaa tcttcgatac
      301 atccaacttt cgggaatagg tataataaga ataaaagtcc cagaagttgg cagtaaggaa
      361 tcggcccttg taattagcag aaatagaggt ataagtatct ctaacaatac cctcaggaga
      421 tatagtatat gcaaccggag tccatggagt atcgtatcca agcataaatt gccagaaata
      481 atttgccgct gctaacattc tgtcatttaa aaattcataa ggtcctacag catctggagc
      541 atacgacacc gtacccttca ctggatcaac tgttgtatgc tgagctaaaa gcatccgatt
      601 aataatggcg gcattcgtca aatcacctcc accatgagcc tggtccctac ccatctctac
      661 atgctgaaca tgcccgggaa caggctttcc tttaccatat ttttttccaa caatatcttc
      721 ctgatcaacc catctgaaga gctgtttgat tgagccattg tatccctgat tattcgcagt
      781 actatttaca gtgtaccatt ccactgcttc attataccgg cttctgtttc cagtaaaaat
      841 gtaacccgac atagccccaa tcagcggata aagatgctga ttcataaacc ggtttgggct
      901 atactgaaaa ttatcaacta ccggtgtaat gagatttttg acaaagtttt ttgtatcggt
      961 atcagtccac ttcaaatctt ctgactgaca attcgtatat cttaatattt ctgctgccat
     1021 caccattctg ttcaatggaa taccggtatg gatatgagca tctgaaaaat atttatattt
     1081 tgaagtatcc atttgagacc aaatccgaat gatgtgcatg gcattacgcc gatactgttc
     1141 atcaccggta ataaaataca atagtgcttg cgtataagca gttaatccat ctccaatgaa
     1201 tgttccatta aacggcttac tattaaagga gttcgataaa ggttgcgaag ggtctgacgc
     1261 attttgattt ctggaaccga cagtccttga tgcggcagtg gattccaaca ttgcattaaa
     1321 ataggtattc cagggctcaa tcttctgtct gactttctgt ctgacatttt caagcaattc
     1381 gctggtcagg ccaactcccg gatgtttaaa tccctcatca tctataactt catttatagc
     1441 aggataataa tctgtaaaaa ctacttctgt tttcggcggg gccgctgcaa taaatgaccc
     1501 actactaaat cctatcagaa tttgtacaag tgtaaaaata cccgggattc taattttctt
     1561 tatctcaatc atacactgat acgttataat cgattgtttc attaatcaac aaacacttta
     1621 ggtgatctaa atatatgaaa taattttgtt gcctacaaaa ctaacacaaa tgatttaaga
     1681 acacaaatga ctatttttcc agatagaact gataatctat ccaattttca aatcagttaa
     1741 tttcataata ttctcattgt ctcaatctac tgcatgcatt ctttttacaa aggtatcgat
     1801 ataggttcta aattatttgc tctaaaccac accagattgt cccattttat aatttgaaac
     1861 aagcttctat ctaacccttc aaaagaagaa cacccattaa atccgctaac attcaacccg
     1921 aatgaaaact catgattatt cggctcaaca cagggaaagt gtttcacttt tagaatgtgg
     1981 aacagctttt tcttgatgaa tttatgtgtt ttttgacaaa ctgatgtact gtcggcttgt
     2041 gcttctttga ttgaaaaaac aggagatacc ttgctgcaaa agcgtgtaaa atacatggtt
     2101 gatggattgg gcgattgcca gcaaaaactg ggaggtaatt acctgagtgc ttttcctgaa
     2161 agcgatttca ctacccttga aaataattca gccaaccatt gtgcgaagga aaagagattc
     2221 tgtctggttt gcattccaac acccatctac ctttggta
//
LOCUS       DATDNM010000529         2784 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1244593, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000529 DATDNM010000000
VERSION     DATDNM010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1244593"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..881
                     /locus_tag="VI413_08955"
     CDS             <1..881
                     /locus_tag="VI413_08955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6914791.1"
                     /translation="QTVLNNINFEIGEGEVVGFLGPNGAGKTTTMKILAGALAYETGS
                     AKICGIEVNENQLKTSSLVGYLPEQNPLYTDMYVKEYLLFVAETYKLGKEKEQRVNEL
                     IDKVGLRPEFHKKIGQLSKGYRQRVGLAQALIPNPKVLILDEPTTGLDPNQLEEIRSL
                     IREIGKDKTVLLSTHIMQEIKAICNRVIVINKGEIAADYSDLSKISEFNENSFSFEVE
                     FSETVNLEALENLEGIISITAITDTHFSLVTSADIRGEIFDFAVKTKNKILTMKTIER
                     SMEDVFRSLTVPNSGF"
     gene            948..1964
                     /gene="ruvB"
                     /locus_tag="VI413_08960"
     CDS             948..1964
                     /gene="ruvB"
                     /locus_tag="VI413_08960"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEY6914792.1"
                     /translation="MEENFDIRNNQKGEKEFENALRPLTFSDFSGQNKIVENLKIFVQ
                     AARMRTESLDHVLLHGPPGLGKTTLSNIIANELNVGFKITSGPVLDKPGDLAGLLTSL
                     EPNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIMIDKGPSARSIQLDLNPFTLIGATT
                     RSGLLTAPLRARFGINCHFEYYDIEVITGIIKRSARLLDVPIDNQAALEIGGRSRGTP
                     RIANALLRRVRDFAQVKGNGSIDVEIACYALEALNIDKYGLDEIDNKILNTIIDKFSG
                     GPVGLTTIATALGEDAGTIEEVYEPFLIKEGFMKRTPRGREVTELAYKHLGKVRLGET
                     GTLF"
     gene            2028..2315
                     /locus_tag="VI413_08965"
     CDS             2028..2315
                     /locus_tag="VI413_08965"
                     /inference="COORDINATES: protein motif:HMM:NF020967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HEY6914793.1"
                     /translation="MDELVTIRSFSQSIDFEMVKSYLESFGIECFGQNEIINRAYINL
                     VDGGIKLQVRAEQAEEAVKLLLEAGYLKPDDFEPTAEMKWMEKLLNFFKRK"
     gene            2369..>2784
                     /locus_tag="VI413_08970"
     CDS             2369..>2784
                     /locus_tag="VI413_08970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HEY6914794.1"
                     /translation="MAKEMKSLAKDTAIYGVSSILGKFLGWLLVPLYTYTLEKQADYG
                     IVTNLYAWTALLLVILTYGMETGYFRYANKDTHNSDKVYGNSLISVGFTSLIFMVLVI
                     LFNQPIANILGYSTHSEFIWLLGITVAMDAFASIPFA"
BASE COUNT          878 a          532 c          634 g          740 t
ORIGIN      
        1 accaaaccgt tctcaacaac atcaattttg aaattggtga aggcgaagtg gttggttttc
       61 tggggccaaa cggggcagga aaaaccacaa cgatgaagat actggccgga gcattggctt
      121 acgaaaccgg ttcggcaaaa atttgtggta ttgaggtgaa tgaaaatcaa ctcaaaacaa
      181 gcagtctggt tggctactta cccgagcaaa acccgttgta caccgatatg tacgtaaaag
      241 aatacctgct ttttgtggca gaaacgtata aactgggaaa agaaaaagaa cagcgggtaa
      301 acgaattgat tgacaaagtg ggcctccgcc ctgagtttca taaaaaaatt ggacaacttt
      361 ccaaaggata ccgtcaacgt gtgggacttg cccaggctct gattccaaac ccgaaagtac
      421 tcattctgga tgaacctaca accggcctcg accccaatca gttggaagaa atccgcagcc
      481 tgattcgtga aatcggcaaa gacaaaacag tactactcag cacgcatatc atgcaggaaa
      541 tcaaggcaat atgcaaccgg gtgattgtga taaacaaagg cgaaattgca gccgattact
      601 ccgatttatc gaaaatcagc gagttcaacg aaaacagttt cagtttcgaa gttgaatttt
      661 cggaaactgt aaaccttgaa gcccttgaaa atctggaggg tataatcagc attacagcga
      721 tcaccgatac tcatttcagc ctggttactt cggcagatat tcgcggagaa attttcgact
      781 ttgccgtgaa aacaaagaat aaaattctga caatgaaaac aattgaacga agcatggagg
      841 atgttttcag aagcctgact gtaccgaaca gcggctttta gacgcttgtc ggatataata
      901 aataattaac gcgtcaagcg gacaaaagcc gctgcacgct taagaacatg gaagaaaact
      961 tcgacataag aaataatcaa aaaggcgaaa aagagtttga aaacgctttg cggccactga
     1021 ctttttcaga ttttagcggg caaaataaaa ttgtcgagaa tctgaaaatt tttgtgcagg
     1081 cagcccgcat gcgtaccgaa tcgctcgacc acgtgttgct gcacggacct ccgggactgg
     1141 gcaaaaccac gctttcaaac atcattgcca acgagctgaa cgtgggtttc aaaattacat
     1201 ccggtccggt gcttgataaa ccgggcgact tagcgggatt gctaacgagc ctggaaccaa
     1261 acgacgtgct ttttatcgac gaaattcacc gcctgagtcc tatcgtggaa gagtacctgt
     1321 attcggctat ggaggattat cgcattgata taatgataga taaaggtcca agtgcacgat
     1381 ctatccagtt ggatttgaat ccgtttacgt tgattggtgc caccactcgc agcggtttgc
     1441 tcacggcacc tttgcgtgca cgttttggca ttaactgcca ttttgaatat tatgatattg
     1501 aggtaattac ggggattatc aagcgttcgg caagattact tgatgttccg attgacaatc
     1561 aggccgcatt ggaaatcgga ggccgcagcc gtggtacgcc tcgtattgcc aacgcgttac
     1621 ttcgtcgtgt tcgggatttt gcccaggtaa aaggtaatgg cagcattgat gttgaaatag
     1681 catgttacgc acttgaagcc ctgaatattg acaaatacgg gttggacgaa attgataata
     1741 aaattttgaa caccatcatt gataaattca gtggtggccc agttggattg accaccattg
     1801 caacagcttt gggcgaagat gccggaacaa ttgaagaagt gtacgaacca ttccttatta
     1861 aagaaggttt tatgaagcgt acaccccgtg gccgtgaagt aacagaatta gcgtataagc
     1921 atttgggaaa agtaagattg ggagaaaccg gaacgttatt ctgattttat tggcaagaag
     1981 taagaggtaa gaaaccaagt attataatca attaatatta attacctatg gacgaattag
     2041 taactatcag aagttttagc caatcaattg attttgaaat ggtaaaatct tatctcgaat
     2101 cgttcggaat agaatgtttc ggacaaaatg agataataaa cagggcttat attaatttgg
     2161 tagatggcgg aataaaactt caggtgcgtg ccgaacaagc agaagaagct gtaaagttgc
     2221 ttttggaagc cggttatctc aaaccagacg attttgagcc aactgcagaa atgaaatgga
     2281 tggaaaaact gttgaacttt tttaaacgaa aataaaatat taatcattgt aaatcagaca
     2341 ttaaaatgtc tgagattcga aagaaattat ggctaaagaa atgaaatcat tggcaaagga
     2401 tactgccatt tacggagtga gcagcatctt gggaaagttt ttgggatggt tgctggtgcc
     2461 actgtacacc tatacacttg agaaacaagc cgattatgga attgtaacca atttatatgc
     2521 ctggactgct ttattgcttg tgattttgac ttacgggatg gaaaccggct atttccgata
     2581 tgcgaataag gatacccata attcggataa agtatatgga aacagtttga tttctgtagg
     2641 atttacttcc ttaatattta tggttctcgt tatcctcttt aatcagccca ttgccaacat
     2701 cttaggttat tcaactcatt ccgagtttat atggctgctt ggtattacgg ttgccatgga
     2761 tgcgtttgcc tccattcctt ttgc
//
LOCUS       DATDNM010000530         3202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_602567, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000530 DATDNM010000000
VERSION     DATDNM010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3202
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_602567"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..928
                     /locus_tag="VI413_08975"
     CDS             <1..928
                     /locus_tag="VI413_08975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914795.1"
                     /translation="WNFMKSTLDELKTYNGTANVVYAEGCKTIGDDRSGFPSALAVAR
                     GADKIVLIIGENWEWSGEAASRASINVPGVQTELLEKLKALNKPIVVVLMNGRPLDLS
                     KENELADAMLEAWYPGTMGGKAITHVLFGEYNPSGKLTMTFPRTIGQVPIFYYEKNTG
                     RPIYLENPKYKSRYIDCPNDPLFPFGFGLSYSTFAYSDIKLSTSELTENGELKASVNV
                     TNTGGKGGEEVVQCYVRDLVGSVTRPVKELKGFEKIALKVGESKVVTFTIKPEMLAFH
                     RADMTYGTEPGDFKLFIGGNSRDVKEIGFKLK"
     gene            1051..2634
                     /locus_tag="VI413_08980"
     CDS             1051..2634
                     /locus_tag="VI413_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEY6914796.1"
                     /translation="MKKNLFILSLLILIVGSTIAQKQNYVVPFELKGQAYPAHTELSW
                     VNHTGFVYEIYRSTDGGIKFTKAGETNTGSYFDFFGKPVVKEQKFNYRILPKGLSLKS
                     PGATKFDVKVIVKPSTDDALLDMTQRYTTRYFYDFAQPQTGLARERSNDINGDIITTG
                     GTGFGIMALVAGAERKYFSRVDAYKIIEKIVSFLEKTERFHGAWSHWYDANTGKAFSF
                     SQYDDGGDLVETAFLTQGLLTAREYFRNGNAGEQNLVNRITKLWETIEWNWYTQGSAD
                     ALYWHWSKNYGFKMNHRITGFDETMITYVLAASSPTFPIERSVYENCYMNSSYYLNGK
                     TYYGIKLDLGMEYGGPLFFTHYSFLGLNPNGLADKHTNYFERNRSHALIHLAYAVDNP
                     KKHVGYGANCWGFTSSDDPIVGYTSHHPGTNDENGTISPTAALSSIVYTPEASMKALH
                     HFYFDRGKQLFGKYGFYDAFNPGLVEGQQVVHSYLAIDQGPIAVMIENYRSGLLWKLF
                     MSNPEIHTGLQKLGFNTEK"
     gene            2658..>3202
                     /locus_tag="VI413_08985"
     CDS             2658..>3202
                     /locus_tag="VI413_08985"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6914797.1"
                     /translation="MKQKITLLLIVMFVGTSTLSAQNLSLSGVVVDKNTGETLIGASV
                     VEKGANNRAITNFDGAFSLSVPNGATLAISYIGYIGQEIVVKNDAKLRILLAPDTKSL
                     EEVVVVGYGTKKAGAVTGSVIQVKSSDILKTPAQSAIQSIQGKAAGVSIIATDEPGKS
                     PTVMIRGINTVLGGRSPLYVI"
BASE COUNT          992 a          610 c          739 g          861 t
ORIGIN      
        1 ctggaacttc atgaaatcca cccttgatga attgaaaact tacaatggca ctgcaaacgt
       61 ggtttatgcc gaaggttgca aaacaatagg cgacgaccgc agcggattcc catcggcttt
      121 ggcagtggcc cgaggcgcag acaaaatagt attgatcata ggcgaaaact gggaatggag
      181 cggagaagcc gccagccgcg caagtatcaa tgtgccggga gtacaaactg aattgctcga
      241 aaaactgaaa gcattgaata aaccaattgt agttgtgctt atgaatggcc gcccattgga
      301 tttatcgaaa gaaaacgaac tggccgatgc tatgcttgaa gcctggtatc cgggaacaat
      361 gggtggaaaa gccattacgc atgtgctttt cggcgaatac aatccatcag gaaagttgac
      421 catgacattt ccacgcacaa taggacaagt tccgatattt tattacgaaa aaaatacagg
      481 ccgccccatt tatttggaga atccaaagta taaatcaaga tacatcgatt gcccgaacga
      541 tccgttgttt ccatttggtt ttgggttgag ctattctact tttgcctatt ctgatattaa
      601 actttccacc agtgagctca ctgaaaacgg tgaattaaaa gcctcggtaa atgtgactaa
      661 cacaggcggc aaagggggtg aagaagttgt ccaatgctat gtccgggatt tggtgggaag
      721 tgttactcgc ccggtaaaag aactgaaagg tttcgagaaa atcgccttga aagtgggcga
      781 aagcaaagtg gtgactttca caattaaacc tgaaatgctg gcatttcata gggctgatat
      841 gacctatgga accgaaccgg gtgatttcaa actgtttatt ggtggaaatt ccagggatgt
      901 gaaggaaatt ggctttaaat taaagtaaaa accaccccta gcccctgaag gggaactaaa
      961 ttagctctgt ctatttaatt attttgacgg gaaagaaaat ataaaaaaca acagtaactt
     1021 cattcccctt taggggtagg ggtaaatatt atgaaaaaaa atctattcat actcagcttg
     1081 ttaattctga ttgttggaag cactattgcc caaaaacaga attatgtggt tcctttcgaa
     1141 ctgaaaggac aggcttatcc ggcacacacc gaattgagtt gggtaaacca caccggattt
     1201 gtgtacgaaa tttaccgctc gacggatgga ggtataaaat tcacgaaggc tggcgaaaca
     1261 aacaccggca gttattttga tttttttgga aaacctgttg taaaagagca aaaattcaac
     1321 tatcggattt tgccaaaagg gttaagtctg aaaagcccgg gtgcaacaaa attcgatgtc
     1381 aaagtaattg taaaaccttc gacagacgat gctttactgg atatgacaca gcgctacaca
     1441 acccgctact tttacgattt tgcgcaacca caaacagggt tagcacgcga aagaagcaac
     1501 gacatcaacg gcgacattat tactacaggt ggaaccggat ttggaattat ggcgttggtt
     1561 gccggagctg aacggaagta tttcagtagg gtggatgctt ataaaatcat cgaaaagatt
     1621 gtcagttttc tcgaaaaaac cgaacgtttc catggggcct ggtcgcattg gtatgatgca
     1681 aacacaggca aagccttcag tttcagtcag tatgatgatg ggggtgattt ggtggaaaca
     1741 gcttttctta cccaaggtct gctcaccgcc cgtgagtatt tccgaaatgg aaatgccgga
     1801 gagcaaaact tagtaaacag gattaccaag ctgtgggaaa caatagaatg gaattggtac
     1861 acgcagggat cggcagatgc actttactgg cattggtcca aaaactacgg tttcaaaatg
     1921 aatcatcgta tcacagggtt tgatgaaaca atgataacgt acgtgttggc agcctcttcg
     1981 cccactttcc cgattgaacg ttctgtgtat gagaattgtt atatgaattc aagctattat
     2041 ttgaacggaa aaacttatta tggaataaaa ctggatttgg gaatggaata tggtggtccg
     2101 ttatttttta cccattactc gtttttagga ttaaatccga atggattggc agataagcat
     2161 actaactatt tcgaacgaaa tcgctcgcac gcacttattc acctcgctta tgctgttgat
     2221 aatccaaaga aacacgtggg ttacggagca aattgttggg gatttacctc gtcggacgat
     2281 ccgattgtag gatatacttc gcaccatccg ggtaccaatg atgaaaatgg taccatatca
     2341 ccaacggctg cactttcgtc aattgtttat acgcctgaag catcgatgaa agcattgcat
     2401 catttctatt tcgacagagg gaaacaactt tttggaaaat atggttttta cgatgctttc
     2461 aatcctggtt tggttgaagg tcagcaggta gtacacagtt acctggctat agatcagggt
     2521 ccgattgccg ttatgattga aaattaccgg agtggtctgc tttggaaatt gtttatgagt
     2581 aacccggaaa tacacaccgg attacaaaaa ctgggattta atacagagaa ataagttaac
     2641 cgaaaaatca cgatattatg aaacagaaaa tcaccctact tttaattgtt atgtttgttg
     2701 gtacaagcac actttctgct caaaacctga gcttaagtgg tgtagttgtt gacaaaaata
     2761 caggcgaaac attaatcgga gcttctgtgg tcgaaaaggg agcaaataat agagccataa
     2821 cgaactttga tggtgctttt agtctctctg ttccaaacgg tgcaactctt gccatctctt
     2881 atattggcta tattggtcag gagattgtcg tgaaaaacga tgcaaaattg cgtattctgc
     2941 ttgcaccgga tacaaaatcc ttggaagaag ttgtggttgt gggttatggt accaaaaagg
     3001 ccggtgcggt taccggatct gtaattcagg tcaaatcaag cgatatactc aaaacgccgg
     3061 ctcaatcagc tatacaatct attcaaggga aagctgcagg tgtaagtatt attgcaactg
     3121 atgaacccgg caaatcacca acagttatga ttcgtggtat taatactgtg cttggaggcc
     3181 gaagtcccct ctatgtgatt ga
//
LOCUS       DATDNM010000531         2296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1671069, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000531 DATDNM010000000
VERSION     DATDNM010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1671069"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..494
                     /locus_tag="VI413_08990"
     CDS             <1..494
                     /locus_tag="VI413_08990"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914798.1"
                     /translation="DFHSYEVLAQKPTSLAIANNEVTWTAEGVSWDVEVRSSANNSLL
                     RSGTVTNKSFSLADLSSGFVVKIRTLNNGVYSDWATYNYLTAVSSPELSKVTISSFND
                     RITVTNGASATLSIYDIEGRSIAEFKLSLDIENIDASFLRKGLYICQIRKENFSVTSK
                     LIK"
     gene            514..>2296
                     /locus_tag="VI413_08995"
     CDS             514..>2296
                     /locus_tag="VI413_08995"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914799.1"
                     /translation="MKKIKIISLLLICFIIGPMLAQSPLDKRIDKLVNAMTTQEKIDQ
                     MINVRTSFGGTASNLRLGIPGFVMGDGPHGVRFTADAYGRTSTAFPTGIAMAATWDES
                     LIGKVGEALGIEFWSFKRNQALGPCLDLARDSRGGRTAESGGEDPYLAGHMAKAMVNG
                     IQKSPVVATVKHFMGESKQINRLKMNVTASQRWLMDFAGYNFRIPVQEAGAMSVMGAY
                     NKINGSKCSESSLMLKTILRGRWGFPFYVVSDWASIDDARNAVRAGTDICMGSSIYEA
                     DLPGLVENKFIMPADLDVSVKNILKTKILSGMLDYTPEGSESNAKTKEISDLNLLTAK
                     KSVILLKNESKSNNSPILPISKTGVKIALIGPNALAENLNCFGSSATNPPYGISIKKG
                     LENKIGTAGFSYAKGCDINSTSQTGFQEAKTLAAQADVVIFAGGLDDTQEGEGYGRGT
                     DRVGGSFALPTIQQTLINELAAVNPNIVVVLQSGGVCTLNDCLTNIKGLVYSFYAAQE
                     AGNAIADVIFGDYNPAGRMPLSMPMQDSDFPSWEETVFAQFEANLDGGYRWLDEKNIK
                     PRYAFGFGLSYTTFEYSNLVLPTAVTSG"
BASE COUNT          703 a          401 c          532 g          660 t
ORIGIN      
        1 gtgattttca tagttatgaa gtgttagctc aaaaacctac gtcactggca atagctaata
       61 atgaggtaac atggacagca gagggtgtaa gttgggacgt tgaagttcgt tccagtgcca
      121 ataattcatt gttacgatct ggtactgtta ccaacaagtc cttttcttta gccgatttgt
      181 cttcaggctt tgttgtaaaa ataagaactc ttaataacgg agtttattcc gattgggcga
      241 catataatta tttaacagct gtttcttctc ctgaactaag taaggtaact atttcgtctt
      301 tcaacgatag aattacagtt acaaatgggg cttctgcaac attgtcaata tatgacattg
      361 aaggccgctc tattgctgaa tttaaattaa gtctggatat tgaaaatatc gatgcttctt
      421 ttttaagaaa aggattgtat atctgccaga ttcgtaaaga gaacttttca gttacttcca
      481 agctaataaa ataaataata aaagagtttt acgatgaaaa aaattaaaat aatatcctta
      541 ttacttatct gttttattat agggccaatg ttagcccaat ctcctttgga taagaggatt
      601 gataagctgg ttaatgcgat gaccacacaa gaaaaaatcg accaaatgat aaatgtacga
      661 accagttttg gtggtactgc ttcaaatctc agacttggaa tcccggggtt cgtaatggga
      721 gatggacctc acggcgtgag attcacagca gatgcttatg ggaggacgtc gactgctttt
      781 ccaacaggaa tagccatggc ggcaacctgg gatgaatcat taattggcaa ggttggtgaa
      841 gctctgggca tcgagttttg gtcgttcaaa cgcaatcagg ctttgggccc atgtctcgat
      901 ttagcacgcg attcacgagg tggacgtacc gctgaaagtg gcggtgaaga tccatactta
      961 gccggacata tggcaaaagc aatggtcaac gggatacaaa agtctccggt ggttgctacc
     1021 gtaaaacatt tcatgggcga aagcaagcaa ataaaccgat tgaaaatgaa tgttacggct
     1081 agtcaacgtt ggttgatgga ttttgccggc tataactttc gcattccggt gcaggaagct
     1141 ggtgcaatga gcgtaatggg agcttataat aagataaacg gaagtaaatg tagcgaaagt
     1201 agcttaatgc taaagacaat tttgcgcgga cgttggggat ttccatttta tgttgtttcc
     1261 gactgggcca gtattgacga tgcacgaaat gcagtacgcg caggaaccga catttgtatg
     1321 ggatcgtcta tctacgaagc tgatctaccc ggtttggtgg aaaacaagtt tattatgccg
     1381 gctgatcttg atgtatcggt aaaaaatatt ctaaagacaa aaatacttag tggaatgctc
     1441 gactatactc ccgaaggaag tgaatcgaac gcaaaaacaa aagaaatatc tgatctgaat
     1501 ttattgacag ctaaaaagtc ggttatttta ttaaagaacg agtcgaagtc aaacaactct
     1561 ccaatattgc caatttcaaa aaccggagta aagattgcgt taatcggtcc gaatgctttg
     1621 gctgaaaacc tgaattgttt tggtagtagt gcaacaaacc ctccttatgg cataagtatt
     1681 aaaaaggggc tggaaaacaa aataggcact gccggatttt cgtatgctaa aggttgtgat
     1741 attaattcga cgtctcagac aggatttcaa gaagcaaaaa cgcttgcagc tcaggccgac
     1801 gttgtgattt ttgccggagg tcttgacgat acgcaggaag gggaaggtta tggacgtgga
     1861 acggataggg taggtggctc ttttgctctt ccaaccattc aacaaacatt gataaatgaa
     1921 ttggctgcgg ttaatccaaa tatcgtagtg gttcttcaga gtggtggagt ttgtacattg
     1981 aacgactgtt tgacaaatat caaaggactt gtatattcat tttacgctgc tcaggaagcg
     2041 ggcaatgcga tagctgatgt gatttttgga gactataacc ctgccggaag aatgcctcta
     2101 tccatgccaa tgcaggatag tgattttcca tcctgggaag aaacagtttt tgcccaattt
     2161 gaggcaaatc ttgatggagg ttatcgttgg ctggatgaaa aaaacattaa accgagatat
     2221 gcttttggtt ttggccttag ttatacaaca tttgaatatt cgaatctggt attaccaaca
     2281 gcagtcactt caggac
//
LOCUS       DATDNM010000532         2387 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_389204, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000532 DATDNM010000000
VERSION     DATDNM010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2387
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389204"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..568
                     /locus_tag="VI413_09000"
     CDS             <1..568
                     /locus_tag="VI413_09000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008762833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEY6914800.1"
                     /translation="CVYCASSTQISPRFFDAANRLGKILAHAGISVVFGGGATGLMGQ
                     LADSMLAANGKISGIIPQFMCDENWHHSELSELIVVATMHERKEKMARMADAVIALPG
                     GCGTLEELLEVITWKQLGIFTKPIVIVNTDGYYNALIDMLHRAIDEKFMRDIHKNMWE
                     VVETPEEVLAAIKNSSNWDSSARSLAAI"
     gene            628..1473
                     /locus_tag="VI413_09005"
     CDS             628..1473
                     /locus_tag="VI413_09005"
                     /inference="COORDINATES: protein motif:HMM:NF025459.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4271 domain-containing protein"
                     /protein_id="HEY6914801.1"
                     /translation="MIQQDSIQLINDSAHVLSPDSLARLDSLARVDSIATADSLARID
                     SLHMVDSIRNVIRLTRGFVGTPHPSLPQTENWVFIVLVALFFLLVFSISRSGSLISET
                     AKNFFQVKERSSIFNKATVNDFQIRLFIIIFAISVISLCSYYFLHKPGTEFSILKFGL
                     ILAITFAFFGLKSLLFDLLGYVFLDPSSLKMAKDSYFNILSLLGMILFPLLIIHIYVP
                     YEIHSTTEIIGLIICVLSYILIIFKLFQIFFHKIVASFYILLYLCTLEFLPLIALYQV
                     YQLII"
     gene            1501..2259
                     /locus_tag="VI413_09010"
     CDS             1501..2259
                     /locus_tag="VI413_09010"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEY6914802.1"
                     /translation="MKIKKILVSQPKPATEKSPYFDISDKYNVKIDFRPFIKVEPIYA
                     KEFRTQRISILDHTAIIFNARHGIDHFFRLCEEMRITIPETMKYFCVSESVALYLQRY
                     IHYRKRKVFYGASGKLADLVTIMNKHTDEKYLLITSDVQNEETMSQLEKSKITYNKSV
                     MYKTVSNDFGPDEEFNYDMLIFFSPVGIGSLLKNFPDFVQGEIVIGCFGATTAQAARE
                     AGLRLDIEVPAPGVTSMTMGIENFLKESNKKARK"
BASE COUNT          722 a          479 c          469 g          717 t
ORIGIN      
        1 ttgtgtttac tgcgcctcaa gcacccaaat tagtccgcga ttttttgatg cagccaaccg
       61 tttaggaaaa attttggccc atgccggaat ttcggttgtg tttggtggag gtgctaccgg
      121 acttatggga caactggccg acagtatgtt ggctgcaaat ggaaaaataa gcggaatcat
      181 tcctcagttc atgtgcgacg aaaactggca tcacagcgaa ctcagtgagc tgatagtggt
      241 ggcaacaatg cacgaacgaa aggaaaaaat ggcccgaatg gccgatgctg ttattgcatt
      301 accaggcgga tgcggaacat tagaagaatt actggaagtg ataacatgga agcaactggg
      361 aattttcaca aaacccattg tcatagtaaa caccgacgga tattataatg cactgattga
      421 tatgcttcac cgcgcaatag acgaaaaatt tatgcgcgat attcataaaa acatgtggga
      481 agtggtggaa acacccgaag aagtgctcgc cgccattaag aattcaagca actgggattc
      541 gagcgcgcga agcctggccg caatttaaat aacggaaata aactgaatta aaatccgaac
      601 ttacagcaat aattaaccaa ccaacaagtg atacagcagg actccataca attgataaac
      661 gacagcgctc acgtgttgtc gcccgattct ttggcccggc tggattcatt agccagagta
      721 gattcgattg caactgctga ttcacttgcc aggattgatt cgttgcacat ggttgactcc
      781 atcagaaacg ttattcgcct cacacgcgga tttgttggta caccacaccc ttctctgcca
      841 caaaccgaaa attgggtctt catcgttttg gttgccttgt tctttttgtt ggtattttct
      901 atttcgcggt ccggaagttt aatttctgag actgcaaaaa acttctttca ggtaaaagaa
      961 cgttcaagca ttttcaacaa agccactgtc aatgactttc agataaggct tttcattatc
     1021 atttttgcca ttagcgtaat aagtttatgt tcttattact ttcttcataa gcccggaacc
     1081 gaattttcga tacttaaatt cggcctcatt ttggcaatca cgtttgcttt tttcggatta
     1141 aagtcacttc ttttcgattt gctggggtac gtatttcttg acccatcaag cctgaaaatg
     1201 gccaaagata gttattttaa tattctttca ttattaggca tgattttatt cccactgctc
     1261 ataatacata tatatgttcc ctatgaaata catagcacta ctgagattat tggcctgata
     1321 atatgcgttt tgagttacat tctcataatt ttcaaattat ttcaaatatt ttttcacaaa
     1381 attgtagctt cgttttatat attgttgtat ctttgcaccc tcgaattttt acccctaatt
     1441 gctttatatc aggtgtatca attgataata tagcatgttt tatttacaaa aactatggcc
     1501 ctgaagatta agaagatact agtttctcaa ccaaaaccag ccaccgaaaa atcgccttat
     1561 tttgacatta gcgacaagta caatgtgaaa atcgatttcc ggccttttat aaaggttgaa
     1621 ccaatttatg caaaagagtt cagaactcaa cgcatatcca ttttagacca cacagctatt
     1681 atttttaatg cacgtcatgg tatcgatcat tttttccgtc tttgcgaaga aatgcgtatt
     1741 acgattccgg aaaccatgaa gtatttctgc gtttccgaat cggtagcttt gtacctgcag
     1801 cgttacatcc attatcgtaa acggaaagta ttctacggag ccagcggcaa attagccgat
     1861 ttggtgacga tcatgaacaa gcatacggac gaaaaatact tgctgataac ttccgatgtt
     1921 cagaatgagg aaacaatgtc tcaactggaa aaatcgaaaa ttacctacaa caaatccgtg
     1981 atgtacaaaa ccgtaagtaa cgattttggt ccggacgaag aatttaacta cgatatgttg
     2041 attttcttta gccccgttgg aattgggtca ttattaaaga atttcccgga ttttgtacaa
     2101 ggcgaaatcg taatcggatg ttttggcgcc acaactgctc aggctgcgcg tgaagccgga
     2161 ttgagattgg atattgaagt gcctgctccg ggagtaactt caatgaccat gggtattgaa
     2221 aatttcctga aagaaagcaa caaaaaagca cgaaaataaa atcgtttcgt aagaattata
     2281 ctatcccaag agtatcgaag attttccgta cttttgggat agttttattt tacagcaatg
     2341 aaccacccga attcattttc caaaccggag catttatgcg gcgaaaa
//
LOCUS       DATDNM010000533         3049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_923242, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000533 DATDNM010000000
VERSION     DATDNM010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3049
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_923242"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VI413_09015"
     CDS             complement(<1..306)
                     /locus_tag="VI413_09015"
                     /inference="COORDINATES: protein motif:HMM:NF012783.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEY6914803.1"
                     /translation="MSTPTYNIDIDSYIGSYGYSQNYVRGKLNDLKNQPVFMRSNSLG
                     GSVNDGLGIYQAIGDHGDVQVDMYGFNASTATWMNGKAKKVRIAANAFYLIHKSMNVV
                     "
     gene            complement(373..816)
                     /locus_tag="VI413_09020"
     CDS             complement(373..816)
                     /locus_tag="VI413_09020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914804.1"
                     /translation="MTTKTLPTILFVEFIPVEELTLYPKKFLSPGDTISAIGEFTKLK
                     LTEPASCNTTSEQTANGLVYTTKITGVISDDRNSKLQHRLQTLFHAYRLTDVYKNKYL
                     VGTHKKPFPEILFSPVNDASPSGIRAVNFEITWVSTLPPIDIIDL"
     gene            complement(923..1402)
                     /locus_tag="VI413_09025"
     CDS             complement(923..1402)
                     /locus_tag="VI413_09025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914805.1"
                     /translation="MSDYNVYLTVPKYLEQWITHTFGNPVELIKDSPEMRTLNELTVK
                     LPCNKMPDTGKDSNITIPIPYFKGKDPAIYNHLHDSGKNALIESFSTLFDKNLFHEIT
                     DLINCTPDSLGKKKKRAALIYAYMEKHGIDEDHWDTVSQRFHRLNQQYGKKKNIKVT"
     gene            complement(1454..1990)
                     /locus_tag="VI413_09030"
     CDS             complement(1454..1990)
                     /locus_tag="VI413_09030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914806.1"
                     /translation="MTLNLEMIIHMGSNFLHNHPGKEKQLELDKDHVIVDREDWELAL
                     KILNETTENSKKRIAIMGGGYQGYICGIDEASTIFIAHDDVVKYPNLPTNVGWHEADS
                     RDKYIIQLQEGLSQEEFIREYLGEAKVIEEFKNMSIQANISAESMKSLSESFAAYDLK
                     NNPKQKHKGHERPYKYHR"
     gene            complement(2132..2578)
                     /locus_tag="VI413_09035"
     CDS             complement(2132..2578)
                     /locus_tag="VI413_09035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914807.1"
                     /translation="MITQLTQFFKTTLEQQKAQWKLNLVMPRFKKSDYVKVSIPKTFI
                     SMVYVLAAWGIRNDGQLTRIMIVANNNQLPIGYPTHTKDITGRQVCVGDKVVYDYKGE
                     SNGYFIVVFEENAFRKKYPKWDPKLGYPLLEFGEQAINMRLKVVKK"
BASE COUNT          811 a          564 c          577 g         1097 t
ORIGIN      
        1 aactacattc attgatttgt gaatgaggta gaatgcattt gcggcaatgc gcactttctt
       61 tgccttgccg ttcatccatg ttgccgtgga agcattgaat ccgtacatgt caacttgcac
      121 atcgccatgg tcgccaatag cctggtaaat accaaggcca tcgttcacgc taccgccaag
      181 cgagttggac cgcatgaaaa ccggttggtt tttcaggtcg ttcaatttgc cacgtacata
      241 gttctgtgag taaccataag agcctatgta gctgtcaata tcaatgttgt aggtaggtgt
      301 agacataaaa aaagttgcaa tgtggtttta atacactgca actttacggc tatatcagaa
      361 aggaaaaaaa gactataaat caataatatc aatgggtgga agggttgaaa cccacgttat
      421 ttcgaagttt acggctcgaa tgccggaagg tgaagcatcg ttcaccggtg agaaaagaat
      481 ctccggaaaa ggttttttat gcgtcccaac cagatatttg tttttataca cgtcggtaag
      541 ccggtaggcg tggaataagg tttgtaaccg atgctgaagc ttcgaattgc gatcgtcgga
      601 aataacaccg gtgatttttg ttgtataaac taatccgttg gcggtttgct cggaagtggt
      661 attgcacgat gccggttcgg ttaactttag tttagtgaac tcaccaatgg cagaaattgt
      721 gtcaccaggt gatagaaatt tctttggata aagggtcaat tcttctaccg gaatgaattc
      781 gacaaataat atagttggga gtgtttttgt ggtcatatat attgtattta aaaaagtgcg
      841 caaagtgctg aaagtgcgca atgtgcgcaa aatgtttaaa gtgcttgttt acgacaaaat
      901 aggcctcaaa gtcagtgagg ttttatgtga cttttatatt ttttttcttt ccatattgtt
      961 ggttcaacct atgaaatctt tgagaaactg tatcccagtg gtcctcatct atgccgtgct
     1021 tttccatata tgcataaatt agagcagctc ttttcttttt tttaccgagg ctgtctggcg
     1081 tgcaatttat gagatcggta atttcatgga atagattttt gtcgaaaagt gttgagaaac
     1141 tttctattaa tgcattcttc ccgctgtcgt gaagatggtt atatattgca ggatcctttc
     1201 ctttgaaata tggaattggg atagtgatat tagaatcttt tccggtatca ggcattttgt
     1261 tgcacggcaa ttttacggtg agctcattga gggttctcat ttcaggagaa tctttgataa
     1321 gttctaccgg attgccaaag gtgtgagtaa tccattgctc aagatatttg ggaactgtca
     1381 gataaacgtt gtaatcgctc ataatggttg caatattagt ttgtgagtaa gttgattaaa
     1441 aattcagtgt gatttatcgg tgatatttgt acggtcgctc atgacctttg tgtttttgct
     1501 ttgggttatt tttaagatcg taggctgcaa atgattcgga taatgatttc attgattcag
     1561 ctgatatatt ggcttgtatg ctcatatttt tgaattcttc aattacttta gcctctccta
     1621 aatattctct tataaattcc tcttgtgata agccttcctg taattgaatg atatatttat
     1681 cccggctatc tgcttcgtgc caccctacgt tagttggtaa attaggatat ttcactacgt
     1741 catcatgtgc tataaaaata gtactggcct catctattcc acaaatataa ccttgatatc
     1801 caccacccat aatagcaatt cgcttcttgg aattttcagt tgtttcattt agaatcttca
     1861 gtgccagttc ccagtcttcc cgatccacta ttacgtgatc tttatctagt tcaagttgtt
     1921 tctcttttcc tgggtgattg tgtagaaaat ttgatcccat gtgtattatc atttctaaat
     1981 ttaatgtcat aaattagttt gttcctttca taaatccatt tagtattaat agccaatccg
     2041 gcttcttgat atctattaat cgcggcatct atatcttgaa ttctttgttc tttccaaatt
     2101 atttcgggaa taattcctat tggtggtttt ttcatttttt cactacttta agtctcatat
     2161 taatagcttg ctctccaaat tccaataaag gataacctag tttcggatcc catttcggat
     2221 atttcttcct gaaggcgttt tcttcgaaca caactataaa atatccattc gattctcctt
     2281 tgtagtcgta aaccactttg tcgccaacac aaacttgccg gccggtgata tctttggtgt
     2341 gagttgggta gccaattggg agttgattgt tattagccac aatcataatc cgggttagtt
     2401 gtccatcatt tcttatcccc catgctgcca aaacataaac cattgaaata aaagtttttg
     2461 gaatagatac ttttacataa tccgattttt taaatcgtgg cattaccaga ttaagtttcc
     2521 actgtgcctt ttgttgctct agcgtagttt tgaaaaattg cgttagttgg gtaatcatat
     2581 tataatctga ttaattgtgc aacatgttca ccatgtatat ctctattaaa tttgccgtat
     2641 tttaccgaaa tatatcctgg caaactgtca attttattta ctattccttg cttaccagta
     2701 catcggtttt ttacaggatc cccgacttta aatttttgtt tatgggcttt ttcgcattct
     2761 ttccaatttg gaaaagggtg acagctgcac ccgtttaaac ctgtgatcat actcctttca
     2821 ttgtttcttc gtaaaacttt tcatcttcta tacaatcaat atatcggcca tcgccaatta
     2881 gtatttcatt cgactgctcg ctacagcaag tacactttcc tgtttccaga tctcgttctg
     2941 aataaattgt ttcttcaatc ataattagcc gagtattgtt agtttagcaa aatagtttgc
     3001 aacctgatta aacatatctt gtatggctaa aactgcctga tcttccggg
//
LOCUS       DATDNM010000534         4328 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_175783, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000534 DATDNM010000000
VERSION     DATDNM010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4328
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175783"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..141
                     /locus_tag="VI413_09040"
     CDS             <1..141
                     /locus_tag="VI413_09040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HEY6914808.1"
                     /translation="ASYATWKATKTSGQFDVKTFEVRARPVSKVADLRPGMTALFEET
                     VK"
     gene            150..1328
                     /locus_tag="VI413_09045"
     CDS             150..1328
                     /locus_tag="VI413_09045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6914809.1"
                     /translation="MSNNIFSSITNTLNRELKRMVSRPIYVIGTVVIMAFSYVFFLTF
                     FNEGQPNKMPIAVVDLDNSSLSRQFTRNLEATQQAKIVMRLNSHKEAREEMQCGNIYA
                     FVEIQRDFSKKAISNRRPTLTFYVNDSYLIAGSLLLKDLSYMSVATSAAMQRKVLRAK
                     GLEENRIMGVIQPIVLDSHLIGNPWANYGTYLLNVILPGVLQLMVLMMTIFAVGVEYK
                     ERTSHEWLETGSNSMFSSLTGKLLPYTVVFTAIGIIGDMLLFRYMHYPLNTSIGWMFL
                     ATFLLVVASQSIGILLIGVTPVLRDGVTLGGFFGMLGVTFAGSTFPIEQMPYGTRIFS
                     DLFPIHHFFNIYVNQALNGLSIHYSLVDFVALLSFCVLPLFVYNRLKNAAINQNYPVK
                     "
     gene            1337..2578
                     /locus_tag="VI413_09050"
     CDS             1337..2578
                     /locus_tag="VI413_09050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019537745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6914810.1"
                     /translation="MKVLKQKPNKFSSIVRDTLKVIKSEFKTMFKDRGVVIMLVLAPL
                     AYPVIYCSLYQNETLIDVPVAAVDCSRSQQSRELLRHIDATQNVQISCKYGTLAEAKQ
                     AFNEKKVHGVIYIPANFKKDLIAGRQATVSMYSDISSFMYYRIISQACSNSVQAMGNQ
                     IQLERLNANGITGEAATISANPIPYYGVPLYNEGAGFASFLMPAILIIIIQQTLFLGI
                     GMIAGTSREENRFHVLVASAVHRGRTLRVIIGKSVCYLLMYAAWSFFILGVIPHAFNL
                     PHIGITLDIVKFMLPFLLSVIFFSMTVSVFLPNRETGMVLFLFFSLILVFVSGVSWPQ
                     SNINSFWKVFAWIFPSTTGVQGYIKINSMGASLHRVKFEYISLWIQTALYFATTCWAY
                     RWQIRKSSKKQLKEIEILPSL"
     gene            complement(3100..3753)
                     /locus_tag="VI413_09055"
     CDS             complement(3100..3753)
                     /locus_tag="VI413_09055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY6914811.1"
                     /translation="MTEEIVIQNTITFVKEVLADAEGGHDWWHIYRVWKLSKHIATSE
                     QADLFVVELGALLHDIADSKFHGGNEDLGPQKAREFLSSQGVEDRVIAHVENIITNIS
                     FKGGNMIQKFKSLELDIVQDADRLDALGAIGIARTFNYGGFKNREIYNPEIKPNLNMT
                     KEEYKHSTAPTLNHFYEKLLLLKARMNTNTGKSMAEQRHRFMEQYLDEFYKEWSGEL"
     gene            complement(3757..>4328)
                     /locus_tag="VI413_09060"
     CDS             complement(3757..>4328)
                     /locus_tag="VI413_09060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914812.1"
                     /translation="LFLADKLTKDMKKEFAGNMYESEKITPIETKEAITIGIPNNRSY
                     SFAKDNSKFLKGDLNNDKKADLIICAYLTEANSQEEKTYFLFLQKENGYEFYREFKAK
                     DIVTETCDKNNFRTGQFNLDSISGGLLIGNSNYREGHEAYFRDYSYRCENEKYKLNVA
                     GQKLDLINQSDLLKKNEQSGEYEKVEVKK"
BASE COUNT         1234 a          889 c          846 g         1359 t
ORIGIN      
        1 gcgtcgtatg caacgtggaa agccacgaag acatccggac agtttgacgt aaaaacattt
       61 gaagtgcgtg ccagacctgt aagcaaagta gctgatttgc gtccgggaat gacggctttg
      121 tttgaggaaa ctgtaaaata aaatttagca tgtcaaacaa tatattttca tccataacca
      181 acacattgaa ccgtgaactt aaacggatgg tcagccgacc aatttacgtt atcgggacgg
      241 tggtgatcat ggcatttagc tacgtgtttt tcctgacgtt tttcaacgaa ggacaaccca
      301 ataaaatgcc aattgcagta gttgatttgg acaattcatc attatcgcgc caatttacac
      361 gcaacctgga agcaactcag caggcaaaaa ttgtaatgcg gctaaacagc cacaaagagg
      421 ctcgcgaaga aatgcaatgc ggaaacattt atgcatttgt agagattcag cgtgatttct
      481 cgaaaaaagc tatttcgaac cgcaggccaa cactgacgtt ttacgtgaat gactcttatt
      541 tgatagccgg ttccctccta ctcaaagatt tgagttatat gagtgtggca acttcggcag
      601 ccatgcaacg aaaagtgctt cgtgcaaaag gcctggaaga aaaccgtatc atgggtgtta
      661 ttcagcccat tgtgttagac tctcacctga ttggtaatcc gtgggcaaat tacggtacgt
      721 acttactgaa cgttattctt cccggagttt tacagctcat ggtgttgatg atgaccattt
      781 ttgctgtggg tgttgagtat aaagaacgca catcgcatga atggctcgaa acaggaagca
      841 actccatgtt ttcatcgctt acggggaagt tattgccata cacggtggtt ttcacagcca
      901 ttggaattat aggggacatg ttgctgtttc ggtatatgca ttatccactg aacacaagta
      961 tcgggtggat gtttctggca acttttctgt tggtagtagc ttcgcaatca atcggcatat
     1021 tgcttatcgg agtcacaccg gtgttgcgcg acggtgtgac gctgggaggc ttctttggga
     1081 tgcttggcgt cacttttgcc ggttcaacat tccctatcga acaaatgcct tatggaacac
     1141 gcatattcag cgatttattc ccaatccacc attttttcaa catttatgta aatcaggcac
     1201 ttaatggact gagtattcat tattctctgg ttgattttgt tgcattacta tcgttctgtg
     1261 ttctgccgct ttttgtgtat aaccgattga aaaacgcagc catcaatcag aactatcctg
     1321 ttaaataaga aatctaatga aagttctaaa acaaaaaccc aataagtttt catcgattgt
     1381 ccgcgatact cttaaagtaa taaaaagtga gttcaagact atgttcaaag accgtggtgt
     1441 agtaattatg cttgttctgg ctccgttggc ttatcctgtt atttattgca gcttatatca
     1501 aaatgaaaca ctgattgacg ttcctgtagc agctgtggat tgttcacgca gtcaacaatc
     1561 acgggaactg cttcgacata ttgatgctac ccaaaatgta cagataagct gtaaatacgg
     1621 aacgctggcg gaagcaaaac aggcttttaa tgagaaaaaa gtgcatggtg taatttatat
     1681 tccggctaac ttcaaaaaag atctaattgc aggcaggcag gcaacagttt ccatgtacag
     1741 cgatatcagc agctttatgt attaccggat tatcagtcag gcgtgcagta acagtgtgca
     1801 agctatggga aatcagattc aactggagcg actgaatgca aacggaataa ccggtgaggc
     1861 tgcaactatt tcagccaatc ctataccata ttatggcgta ccactttaca acgaaggagc
     1921 gggttttgcg agctttttaa tgcctgccat actcattatc attattcaac aaaccttgtt
     1981 tctgggtatt ggcatgattg caggtacttc ccgcgaagaa aaccgttttc atgttttggt
     2041 tgcatcagct gtgcatcgtg gcagaacgtt gcgcgtaatc attggcaaaa gcgtttgtta
     2101 cctgcttatg tatgcagcgt ggtcgttctt tattttggga gtgataccac atgcgttcaa
     2161 cctgcctcat ataggaatta cacttgatat tgtgaagttt atgttaccat ttttactgtc
     2221 ggttatcttc ttttccatga cagtatctgt atttttgcct aaccgcgaaa caggcatggt
     2281 acttttcctg ttcttttcgc tcatactggt atttgtgagt ggggtatcgt ggccacagtc
     2341 caacatcaac agtttttgga aagtatttgc atggatattc ccatccacaa ccggggtgca
     2401 gggctatatc aaaataaaca gcatgggagc cagtttgcac cgcgttaaat ttgaatatat
     2461 aagtctgtgg atacaaactg cactttactt tgcaacaact tgttgggctt atcggtggca
     2521 aataaggaaa agcagcaaaa aacagctgaa agaaatagaa atacttccca gcttataatc
     2581 tcatattttt ttgctttcaa aatcgaacga gcgggtgtga ttttaaactg aaaacacact
     2641 cgcttgtttt aaataaaatg tttatcagca aagtgtatta cgattttatc aatacttatt
     2701 aaatcaacgc cgcctgtaat gcaaaacatt caggccgcaa tatgcaggag atactatttc
     2761 actagcctaa ccatgaacta ctgcattcat tccttgtcta ctatctatct aagtcgtatg
     2821 tgatatttta ataaggatac atcaagcact ttgacaggta cctgtcaagg tgcttgactc
     2881 atacctgtca aagtgcttga cacgtacgtg tcaaagtcac cacaccggta gtagtggaat
     2941 ggtcaaataa ctaatacaat gcgggcaagc atgagggaac gactctgtcc attcttagta
     3001 tagatttttc aactgtctta caaatgattg ttcttgttga atcaggacgc tttgcggata
     3061 aatattttaa ataaatatcc aggacaactt tttgcttatc taaagttcac cactccattc
     3121 tttataaaat tcatccaggt attgttccat aaaccgatgc ctttgttctg ccattgattt
     3181 tccggtattg gtattcattc tggcttttag caaaaggagt ttttcgtaga aatgattaag
     3241 cgtcggagcc gtactatgct tatactcctc tttggtcatg ttcaggttgg gtttaatttc
     3301 cggattgtag atttcccggt ttttaaaacc gccataattg aatgtgcggg caatgccaat
     3361 agcgcccaaa gcgtcaagcc tgtcagcatc ctgaacaatg tcaagttcca gcgatttaaa
     3421 cttctgaatc atatttccgc ctttaaaaga gatattggta attatgtttt ctacatgcgc
     3481 tattacccga tcttcaactc cctgtgaact taaaaactcc cgggcttttt gaggtccaag
     3541 atcttcattg ccaccatgaa atttagaatc ggcaatgtca tgtaacaaag ctcctaactc
     3601 aaccacaaac aaatcagcct gttccgaagt ggcaatatgt ttcgacaatt tccatacccg
     3661 gtagatatgc caccagtcat gaccaccttc agcatctgcc aaaacctctt ttacaaaggt
     3721 gatagtattt tgaattacaa tttcctcagt cattgattac ttcttaacct caaccttttc
     3781 atactcacct gactgctcat ttttcttcaa caagtctgac tgatttatta agtctaattt
     3841 ttggcctgct acattcagtt tatatttttc attttcacaa cggtaagagt agtcacgaaa
     3901 atacgcttca tgtccttcac gatagtttga gtttccgata agcaacccac cactgattga
     3961 atcaagattg aattgtccgg ttctgaaatt atttttatca caggtttcag tcacaatatc
     4021 tttagcttta aattctctat aaaactcata accattttcc ttttggagaa aaagaaaata
     4081 cgtcttttct tcctgactgt tagcttcagt cagatatgca caaataatca aatcggcctt
     4141 tttgtcatta ttcaaatcgc cttttaaaaa ttttgaattg tcctttgcaa aagaatatga
     4201 cctgttattg gggataccga ttgtaatagc ttccttggtt tcaataggtg taattttctc
     4261 gctttcatac atatttccgg caaattcttt cttcatatcc ttcgtcagct tatccgcgag
     4321 gaacaaat
//
LOCUS       DATDNM010000535         3675 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_708751, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000535 DATDNM010000000
VERSION     DATDNM010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3675
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_708751"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..1095)
                     /locus_tag="VI413_09065"
     CDS             complement(133..1095)
                     /locus_tag="VI413_09065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914813.1"
                     /translation="MEENNSKEINLLQLINSAIDWLVKVAIGALNLVGKMIKLSYKYK
                     IVTGIVLILSIAYGQYLARPSARVYNAEAMAMLYGSEAQTVKEVSKQLENTLATNNLI
                     SFGAKLSLPDSIAKNIVGFQSFYVIDYLKDDVADKVDFANNHSLTDTLNLKMKDRLYF
                     QIKTLNISQVPKIQAALLNYFNKNSVMKTEFEQKKSELENRIQICNIESRRIDSLARI
                     SYFQNIDQQLRFENNKLLLGEQKKQLFYEELLRLNDIRSYGEMKLADFKQPVDLPSDF
                     VVNPNPINGRGKYGFYSLIIGYALGLLIVVLMDNLKRIKAFLVK"
     gene            complement(1128..1805)
                     /locus_tag="VI413_09070"
     CDS             complement(1128..1805)
                     /locus_tag="VI413_09070"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEY6914814.1"
                     /translation="MLENSDNSTYKRQFVNAAFIPFIISILMILSFVLEKGMDWDFHT
                     AGVYPRRIECIWGVFTLVFVHADWSHLINNVISFIILCSFLYYFYRELASRILIISYV
                     FSGLILWGIGRESWHIGASGLIYALAFFLFFSGIIRKHVPLIAISLIVALIYGSMIWH
                     IFPWEVHDAISWEGHLAGGIIGFILSIFYRNKGPKKPVKIWDDEDNFIEYISDEDETQ
                     NEDNKIG"
     gene            2166..>3675
                     /locus_tag="VI413_09075"
     CDS             2166..>3675
                     /locus_tag="VI413_09075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007838296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching enzyme N-terminal
                     domain-containing protein"
                     /protein_id="HEY6914815.1"
                     /translation="MSYLNFDKTLLTNLEKSLSKEMIRTNRAGAYNSSTLIECNTRKY
                     HGQLVIPIPEIDNSNHVLLSSLDETVIQHGAEFNLGIHKYEGNNYSPNGHKYIRQFDC
                     EVISRTIYRVGGVILSKEKLLVSFEPRVLIKYTLLEAHSPTFLRFKPFLAFRSANALS
                     HQNDNADTSYTEIQDGICMCMYEKYPCLKMQFSKKPTYVHQPDWYKNIEYFKEQERGY
                     EYKEDLLVPGYFEMPIKKGESIIFSAGISEVSPQKLKTLWEEEVERRIHRDDMFSCLK
                     NSAQQFYKREGDKTYLLAGYPWFGARARDQFIALPGCTLTIDRIDYFDAIMETAIPEL
                     ERFMAGERSGFKLQAIDDPDVLLWFLWTIQIFSKATSLKEAANRYEKIANSIISFIRK
                     QNHPNLFLHNNGLLHVNGTEKPATWMNAMENGRPITPRTGYVVEINSLWYNALKFTSE
                     LTRESGNEHGADLLDYQAEIAREAFVKTFWNGTYLYDFVDGNYNDQEVRPNMI"
BASE COUNT         1296 a          699 c          554 g         1126 t
ORIGIN      
        1 catcaatccg ctcatattat atgaagcggc ataaaccaat ctctcgttcg gccttatctg
       61 ggaaaaacca aaaccggcag ttaagagtaa actaagtatt ataaatcctt ttttcatttt
      121 cacaaaaatc aactatttta caagaaatgc ttttattctc ttcaaattat ccatcaatac
      181 aacaatcaaa agccccagag cataaccaat tatcaaactg taaaaaccat atttacctct
      241 accattaatt ggatttggat taacaacaaa atcagatggt aaatccactg gctgtttaaa
      301 atctgcaagt ttcatctcac catatgatcg aatatcattt aatcgtaata gttcctcata
      361 aaaaagttgt ttcttttgtt cacccagtaa taatttattg ttttcaaaac gtaattgttg
      421 atctatgttt tggaaatatg aaattctcgc cagactatca atacgtcgag attcaatatt
      481 acagatttga attctgtttt ccaattcact ctttttctgt tcaaattcgg ttttcatcac
      541 tgaattttta ttaaaatagt ttagtagcgc cgcttgaatt ttaggtacct gactaatatt
      601 caacgtcttt atttgaaaat ataatcgatc cttcattttc agatttaagg tatctgtcag
      661 agaatggttg tttgcaaaat caactttatc agcaacatca tcttttaaat agtcaataac
      721 ataaaaagac tggaacccaa caatgttctt tgcgatacta tccggaagtg atagttttgc
      781 cccaaaagaa ataagattat tcgttgcaag cgtattttca agttgttttg aaacctcctt
      841 tacagtctgg gcttcagagc cataaagcat agccattgct tccgcattat aaacccttgc
      901 agaaggtctc gccaaatact ggccgtaagc aatgctaaga ataagtacaa tacctgttac
      961 aattttatat ttgtaactta actttatcat tttaccaaca agatttaaag cacctatcgc
     1021 cacttttaca agccagtcaa tagcagaatt tatcaattgt agtaaattga tttctttaga
     1081 gttattctct tccatattta atctgtattt tatattattt atacttatta tccaatctta
     1141 ttgtcttcat tttgagtttc atcttcatcc gaaatatact ctatgaagtt gtcctcatca
     1201 tcccatattt taactggttt ctttggtcct ttattgcggt aaaatattga caagataaat
     1261 ccaataattc ctcctgccaa atgaccttcc cacgaaatgg catcatgcac ttcccatgga
     1321 aaaatgtgcc aaatcatact tccatatatt aaagctacaa ttaatgatat agcaatcagt
     1381 ggtacatgtt tacgtataat cccactaaaa aacaaaaaga aagccaacgc gtaaattaaa
     1441 ccgctagctc caatgtgcca actttctctg ccaattcccc agagaattaa accactgaaa
     1501 acatatgaaa taattaatat tcttgaagca agttccctat agaaatagta caaaaaacta
     1561 caaagaataa taaatgaaat gacattatta atcaaatggc tccagtctgc atgaacaaaa
     1621 accaacgtaa aaacacccca aatacattca attctccggg ggtacacacc tgccgtatga
     1681 aaatcccaat ccatcccttt ttcgagcaca aaactcaaaa tcatcagaat acttataatg
     1741 aaaggaataa aagcggcatt tacaaattgt cgcttataag tagaattatc ggaattttca
     1801 agcattattc tttgaacttg tcttttcgtg acaaagttac aatttctttg tgtagttaac
     1861 gaaaaaacaa caataaaagt acattattga aaataaaaaa aaacaacatc caattaaaat
     1921 cactagattt caatacaata ctcaaaatat taaacattta ttttttacct aaagtaaatt
     1981 acatttaatc aacaaaaatc tattaaaaaa cgtttttata tttcggaaat aattaatata
     2041 ttgcggtcga taaatggaaa tcaactgcct ttctgacaag agtcctgatt cctgcaagca
     2101 tatttcaatt ggaataaatt ttatttaatt gaattcgaaa gttatatcct tattaagttt
     2161 aatctatgag ctacctcaat tttgacaaaa ccttgctaac aaatttagaa aaatcgcttt
     2221 caaaagagat gattcggaca aacagggctg gcgcttacaa cagttctacc ctaattgaat
     2281 gcaatacgcg caaataccac ggacagttag ttataccaat cccagagatt gataattcga
     2341 accatgtact gctttcatct cttgacgaaa cagtaattca acatggtgct gaattcaatt
     2401 taggaataca taaatacgaa ggaaacaact atagccccaa tggtcataaa tatattcgtc
     2461 agttcgactg cgaagtaatt tcaagaacca tttaccgggt tggaggtgta atactatcca
     2521 aagaaaaact tttagtttca tttgagccaa gagtcctgat taaatataca ttactcgaag
     2581 cacactcgcc tacattcctt cgtttcaaac cattcctggc atttcggagt gcaaatgcac
     2641 tatcgcatca aaatgacaac gccgacacat catacactga aattcaagat ggaatatgca
     2701 tgtgtatgta cgaaaaatat ccgtgtttaa aaatgcaatt ctctaaaaaa ccgacttacg
     2761 ttcatcaacc ggattggtat aaaaatatag aatatttcaa agaacaagaa cgcggttacg
     2821 aatacaaaga agatttgctt gtaccgggct attttgaaat gcctataaaa aaaggcgaat
     2881 caatcatttt ttctgccgga atttcagaag tgtctccgca aaagcttaaa accctttggg
     2941 aagaggaagt agagcgtaga atccatcggg atgatatgtt tagttgcctg aaaaactcag
     3001 cacaacaatt ttataaacgt gaaggagata aaacctattt gttagcaggt tatccatggt
     3061 ttggagcacg tgccagagat cagtttattg ccttacccgg ttgtacactt accatcgaca
     3121 gaatagatta tttcgatgca attatggaaa cggcaatccc tgaactggaa aggtttatgg
     3181 ctggtgagcg aagtggattc aagcttcagg caatagatga cccggatgta cttctgtggt
     3241 ttttatggac tattcagata ttttcgaaag caacttcgtt aaaagaggct gctaacagat
     3301 atgagaaaat tgccaactca attatttctt ttattcgaaa acaaaatcat ccaaatctgt
     3361 ttttacataa caatggactt ctacatgtaa acggcaccga aaaaccggcc acatggatga
     3421 atgccatgga aaatggccgc ccgataacac ccagaaccgg ctatgtagtt gaaataaact
     3481 cactttggta taatgcgttg aaattcacct ctgaattaac cagagagagt ggaaacgaac
     3541 atggagccga tttgttggat tatcaagcag aaatagcccg cgaagcattt gtaaaaacat
     3601 tctggaatgg tacatacctt tacgattttg tagatggaaa ttacaatgat caggaagtac
     3661 gacccaatat gattc
//
LOCUS       DATDNM010000536         2306 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_68499, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000536 DATDNM010000000
VERSION     DATDNM010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68499"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1026)
                     /locus_tag="VI413_09080"
     CDS             complement(<1..1026)
                     /locus_tag="VI413_09080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 57 protein"
                     /protein_id="HEY6914816.1"
                     /translation="MRNICFYFQLHLPFRLKRYRFTEIGKDHYYYDDFQIGDRIRNAV
                     EQSYLTANRTISEMIRSSNGKFRCAFTISGVTLEQLEQYAPEVIDSFKELAKTDSVEF
                     LAEPYAHSLSSIYDGDEFERQVTMHANKIESLFGKRPTALFNAELVYSDEIGERAYKM
                     GYKTVLIDEAKHIMGWKSPNYVYNHSYVPKLKLLVRNNKLSDDIAFRFSGMSLSAENF
                     IGWIANLPPEEKVINLGFGYEVLGITQPAYTGIFEFMKSLPYHAMEQKMHFVLPTEIT
                     KKSDSAGPLSVPHPMSWVGDEKNLTPWTANDLQQEALNKLYAVSERVRMCSDKPLLRD
                     WLILQSTD"
     gene            complement(1101..>2306)
                     /locus_tag="VI413_09085"
     CDS             complement(1101..>2306)
                     /locus_tag="VI413_09085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009129125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6914817.1"
                     /translation="GGLGTASYGLTKGMALQEDMQITFVIPKPHGDEDQSFLKIIGAC
                     NVPVVWKENDWNHVNQRIGSMMHPDEYFWLRNGIKYDYNRIHTNELGCIGFSGRYPDN
                     LIEEISNYEAVASVLAHQIDFDIIHSHDWLTYPAGVFAKQISGKPLVIHVHATDFDRS
                     RGQVNPTVYSIEKRGMDMADHIMTVSDLTRKIVIEKYHQDPRKVTTVHNAVDPLPNAE
                     SFQKSQRKDKVVTFLGRITMQKGPEYFVEAAHLVLQKTAGVRFVMAGSGDMMHAMIDL
                     VAKRGIADRFHFTGFLKGKQVHEMLAESDVYIMPSVSEPFGISPLEAMQVGTPSIISK
                     QSGCAEILTHAIKTDYWDIDAMADAIYAIVKNPGMYKSLRDLGRDEVNNISWYDAGMK
                     VRKIYESVM"
BASE COUNT          646 a          486 c          425 g          749 t
ORIGIN      
        1 atcggtagat tgtagtatca accaatcacg taaaagaggt ttgtcggaac acatgcgaac
       61 gcgctcactt acagcataca gcttatttaa agcttcttgt tgcaaatcat tggcagtcca
      121 cggtgtcaga tttttttcat ctccaaccca actcattggg tgcggtacag acaatggacc
      181 tgcagaatca cttttttttg tgatttccgt tggaagaaca aagtgcattt tttgttccat
      241 ggcatggtaa ggcaatgatt tcataaactc aaaaatgcct gtgtacgctg gttgagttat
      301 tcctaaaacc tcatatccaa atcctaaatt aattactttt tcttctggcg ggagattggc
      361 aatccaaccg ataaaatttt cagcagacaa agacatcccc gaaaaacgaa aggctatgtc
      421 atcgctaagt ttattatttc tgactaataa tttcagcttt ggtacgtaag aatggttata
      481 aacataattg ggacttttcc aacccataat atgctttgcc tcgtcaatga gcacagtttt
      541 gtatcccatt ttatatgctc gctctccaat ttcatctgaa taaaccaatt ctgcattgaa
      601 taaggctgtt ggtcgtttgc caaacagaga ttcaatttta ttggcatgca ttgttacctg
      661 tcgttcaaat tcatcgccat cataaatcga tgaaagtgaa tgagcataag gctcggccaa
      721 aaattcaaca ctatcggttt ttgctaattc tttaaaactg tcaatgactt ccggtgcata
      781 ttgttctaat tgttccaggg taactcccga aattgtaaat gcacaacgga atttaccgtt
      841 tgaactacga atcatttctg aaatggtccg attagcagta agatatgatt gttctacagc
      901 attacgaatt cggtccccta tttgaaaatc gtcgtaataa taatgatctt taccaatttc
      961 agtgaaacga taacgtttca ggcgaaaagg aagatgaagt tgaaaataaa aacaaatgtt
     1021 tctcatattg tatagatatt ggtctcatta gtgtcgagac atattaacgt tgtgttattt
     1081 gcttcgcaat aaattgtaaa ttacatgaca ctttcatata ttttgcgcac tttcatgcct
     1141 gcatcatacc agctaatgtt attcacctca tctctgccga ggtcgcgcaa acttttatac
     1201 atgcctggat tttttacaat agcataaatg gcatctgcca tggcgtctat atcccaataa
     1261 tctgttttta tggcatgtgt cagaatttcg gcacaaccgg attgtttgga aataatagat
     1321 ggcgttccta cctgcattgc ttccaggggc gatattccaa agggttccga cactgaaggc
     1381 ataatatata catcactttc agccagcatt tcatgtactt gttttccctt aagaaatcca
     1441 gtaaaatgga agcggtcggc aattccacgt tttgctacga gatcaatcat ggcatgcatc
     1501 atgtcaccac ttccggccat tacaaaccgg acgccagctg ttttttgcag aacaagatga
     1561 gctgcttcaa caaagtattc cggtcctttt tgcatggtga tacgtccaag gaaagttacc
     1621 actttatctt tgcgctggct tttttgaaaa gattctgcat ttggcaacgg gtcaactgca
     1681 ttatgcactg tagtcacttt tcgtgggtcc tgatgatatt tttcaattac aattttgcgg
     1741 gtcaagtcac ttaccgtcat tatgtgatcg gccatatcca ttcctcgttt ttcaatgctg
     1801 taaaccgttg gattgacctg cccgcgactg cggtcgaaat cggtggcatg cacatgaatt
     1861 acaaggggtt ttccacttat ttgttttgca aaaacccctg cagggtatgt taaccaatcg
     1921 tgtgagtgaa taatatcaaa atctatctga tgtgctaaaa cacttgccac agcttcatag
     1981 tttgatattt cttctatcag attgtcagga tagcggcctg aaaatccaat acagcccaat
     2041 tcattggtgt gtatgcgatt ataatcatat ttaatgccgt ttcttaacca gaaatattca
     2101 tcgggatgca tcatggatcc aatccgttga tttacatggt tccagtcatt ttctttccat
     2161 accacaggta cgttacatgc tccgataatt ttcaagaaac tttgatcttc atcgccatga
     2221 ggttttggaa ttacaaaggt aatttgcata tcctcctgta acgccattcc tttcgtcagt
     2281 ccgtagcttg ctgttcccag tccccc
//
LOCUS       DATDNM010000537         2621 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1350428, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000537 DATDNM010000000
VERSION     DATDNM010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1350428"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..672)
                     /locus_tag="VI413_09090"
     CDS             complement(<1..672)
                     /locus_tag="VI413_09090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914818.1"
                     /translation="MKVINKDIIHVPIWGGAEYSVVRVHDSIYDQLAQSGHEERLNDL
                     DLFSDLKIRTIRYPLLWEKFSQDEKLFFKLHDQRLDRLQQLDIEPIAGLLHHGSGPFF
                     TDLYDLDFPKYLSEFAYKIAERYPWINLYTPVNEPLTTARFSGLYGVWFPHKSDDYSF
                     IRILLNELKGVVLSMQAVNSINANAKLVQTEDICKIYSTNSLKYQADFENERRWLTYD
                     ILLGNL"
     gene            complement(701..1711)
                     /locus_tag="VI413_09095"
     CDS             complement(701..1711)
                     /locus_tag="VI413_09095"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6914819.1"
                     /translation="MKLTVITPHIKESTNENEINLYLKDSVRDIIKWYNVSDYMLWYL
                     TPMAVEFTGDLHPKTIVYDSMDELSAFKGAHPNMIRNENTLFKMADVVFTGGYHLYEF
                     KKNRHHNIHPIPSSIDQAHFESGLGGQDPADQAQIPFPRVGFFGVLDERLNIELLDDL
                     ALKMPDFHFIMIGPVVKIDPASLPRHENIHYLGQKNYEELPFYLAHWDVAFLPFAKND
                     STRFISPTKIPEYLSANKPVVSTSIRDVIVPYGELGMVEIADAVDDFSLAILKVMKQR
                     ENVDWQKTVKDHLKTNSWDLTWSKMKHIIYSTLESKESVLDVPTLKKEMNHFSYNLNN
                     SR"
     gene            complement(1992..2141)
                     /locus_tag="VI413_09100"
     CDS             complement(1992..2141)
                     /locus_tag="VI413_09100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914820.1"
                     /translation="MKKNSIKNEEHRGNIQDVMNNYLEEMKMVNEAPRHFYSRDGGVT
                     KVDEV"
     gene            complement(2227..2373)
                     /locus_tag="VI413_09105"
     CDS             complement(2227..2373)
                     /locus_tag="VI413_09105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914821.1"
                     /translation="MKMTVKNTEHRGNVQEVLDNYLEEMKMVDKAPRSFYSRDGGVNT
                     IAIK"
     gene            complement(2423..>2621)
                     /locus_tag="VI413_09110"
     CDS             complement(2423..>2621)
                     /locus_tag="VI413_09110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914822.1"
                     /translation="QQLVLKYRQEIGALKNTFISGRLGDYKYYDMHDTINHALDMYDK
                     LVLEPVNGQAIIRAKSTSVNT"
BASE COUNT          732 a          524 c          487 g          878 t
ORIGIN      
        1 taaattaccc agcagaatgt cataggtaag ccatcgcctt tcattttcaa aatcggcctg
       61 atattttaat gaattggtac tgtatatttt acagatatcc tctgtctgaa ccagtttggc
      121 attcgcattg atgctattta cggcctgcat tgacagaacc actcctttta attcattgag
      181 taaaatcctg ataaaagaat aatcgtcact tttatggggg aaccaaaccc catacaggcc
      241 tgaaaaacgt gctgttgtca ggggttcatt taccggggta tataaattga tccatggata
      301 tcgttctgct attttataag cgaattccga tagatattta gggaaatcga ggtcataaag
      361 atcggtaaaa aaaggcccgc taccatgatg caaaagcccg gcaatgggtt caatgtccaa
      421 ttgttgtagc ctgtccagcc gctggtcatg taatttgaag aagagttttt cgtcctggga
      481 aaacttttcc cagagcaaag gatatcttat tgtccttatc ttcaaatccg agaaaagatc
      541 caggtcgttg agtctttctt catgaccact ttgggcgagc tgatcgtata tgctgtcatg
      601 tactcgtacc acagaatact cagccccacc ccagataggt acatgtatga tatctttatt
      661 aattactttc aaatagttcc tttttagtat gaatgtatct ttaacgagaa ttattaagat
      721 tataagaaaa atggttcatc tctttcttca acgtaggtac atccaataca ctttccttac
      781 tttctaaagt ggaatagata atatgcttca tttttgacca ggtaagatcc catgaatttg
      841 ttttcagatg atcttttacc gtcttttgcc aatctacatt ttctctttgc ttcatcacct
      901 ttaggattgc caacgaaaaa tcatcgactg catcggctat ttcaaccatt cccaattcgc
      961 cgtagggaac gatcacatcc ctgatggaag ttgatacaac cggtttattg gcggaaaggt
     1021 attccgggat ttttgtagga cttataaaac gggtactgtc attttttgca aacgggagaa
     1081 atgccacatc ccaatgcgcc agatagaaag gtaactcttc ataatttttt tggcccaggt
     1141 aatggatatt ttcatggcgg ggcaaggaag ctgggtcaat ctttacaacc ggaccaatca
     1201 ttatgaaatg gaaatcgggc attttcaggg caaggtcatc caacagttcg atattgagtc
     1261 tttcatccag aacgccaaag aagcctaccc ttgggaaagg tatttgcgcc tggtcggcag
     1321 gatcctgacc tcccagaccg ctttcaaaat gggcctggtc aatgctgctt ggaatgggat
     1381 gaatattgtg atgcctgttc tttttaaact cgtacaagtg atagccaccg gtgaacacca
     1441 catcagccat tttaaacaag gtgttttcat ttctaatcat gttaggatgt gctcctttaa
     1501 aagccgacag ttcatccatc gaatcataaa caattgtttt gggatgcaaa tcccctgtaa
     1561 attcaacggc cattggcgtg agataccaca acatgtaatc ggaaacgtta taccatttaa
     1621 tgatatcacg aacagaatct ttaaggtaaa ggtttatctc attttcattt gtgctttcct
     1681 tgatatgagg cgtgatgact gttaatttca aatttttgga ataaatggtc ttcaaaaaat
     1741 tggattcata attgcctata ataggttcct caaagtaaaa caccctggat tctttggccc
     1801 agcgtgttaa aaggtgttgt ggtctttgaa aaacaaagtt ccacctcaaa tgggagaaac
     1861 agataatatc ttttattttc tgttgatcat tatcgctgat caggagcttg ccatttaatg
     1921 cgggttgatt tgtcccgtaa tcaaaggttc tatttttgtt attcctcata tatctaattg
     1981 ttttataaaa tttatacttc gtctactttt gtgactcctc catcgcgtga atagaaatgc
     2041 cttggcgctt catttaccat tttcatttct tccaggtaat tattcatcac atcctgtata
     2101 tttccgcgat gttcttcgtt ttttatagaa ttctttttca tggtgaattg tttttaatga
     2161 ttgttgttaa gaaaaatgag aagtttgaac cattgatcca atggttcaaa ctctcactaa
     2221 ctgcaattac ttgattgcaa tagtatttac tcccccatcc cgggaataaa acgatcgtgg
     2281 tgctttatca accattttca tttcttccag gtagttatcc aaaacttcct gtacattccc
     2341 gcggtgttcg gtgtttttaa cagtcatttt catgttgata attttaaata gttaatactt
     2401 ctgcaaccaa ttgcgtcttt catcaggtat tgaccgatgt acttttagcc cgaataattg
     2461 cttgcccgtt gacgggttct aaaaccagct tgtcatacat gtccaatgca tgattaatcg
     2521 tgtcatgcat gtcataatat ttataatcgc ccaatcgtcc gctgataaat gtatttttaa
     2581 gggcgccaat ttcctgccgg tattttaata ccagttgttg a
//
LOCUS       DATDNM010000538         2703 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1458419, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000538 DATDNM010000000
VERSION     DATDNM010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2703
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1458419"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..339)
                     /locus_tag="VI413_09115"
     CDS             complement(<1..339)
                     /locus_tag="VI413_09115"
                     /inference="COORDINATES: protein motif:HMM:NF025861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 97 N-terminal
                     domain-containing protein"
                     /protein_id="HEY6914823.1"
                     /translation="MQKSFLIIAFICFSALLVQATNKKLTVTSPDGKLSIEASVTLSG
                     APIYTVKNNNQPIILQSALGLVSDQGDFSEKVKLSQVTPLKKITETYNAPAEKRTNRT
                     YTANCASLTLT"
     gene            complement(388..2235)
                     /locus_tag="VI413_09120"
     CDS             complement(388..2235)
                     /locus_tag="VI413_09120"
                     /inference="COORDINATES: protein motif:HMM:NF027814.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914824.1"
                     /translation="MKKTLLLTLLFLYGLQSFSQTLKSPLMGWASWNNFGVNINESII
                     KNQADAMVSSGLLAAGYNYLNIDDGFFNGRYSNGGLRLDTLKFPHKMKYLADYIHSKG
                     LKAGYYSDAGNNTCGSQYNNQTGGIGGGLYGRDQQDIDTIFRNWGFDFLKVDYCGGLV
                     QKLDEKARYTAIRTAMNNTGRTDINYNVCRWQFPGSWVTTVADSWRISVDIYMSWVSV
                     LNNLDKNAYLAAYCSQGHYNDMDMLEVGRGLTAEEDKSHFSMWCIMSSPLVLGNDMTT
                     ISQTTKNILTNAEVIAVNQDTTGLQAKIVTDNAKGLQVWAKPLNGKLSKERAVVLFNR
                     TAAAATMSVKWKDLNLIGPATVRNLWSHTDFGSMDSMYTATVPSHGVIMLKVIGTQTK
                     LPETFEAEYGWINNFNLTANSVVIANQGIASVDTTCSGRAKAGWLGNRADNYLEFRDI
                     YANAPGSYNLKITYISGENRTATMSVNGKDTVLTALNSGNWTALKTNTYKISLKQGYN
                     TIRFSNATAWLPDFDKIQLDLNKYSVGTGLKTTIQRKVKLRPNPCADFLEVESESPVK
                     QVNIFSLAGSMLLTSGSEPKINVSSLRTGLYIVKATTESGTEIEKILKQ"
     gene            complement(2356..>2703)
                     /locus_tag="VI413_09125"
     CDS             complement(2356..>2703)
                     /locus_tag="VI413_09125"
                     /inference="COORDINATES: protein motif:HMM:NF027687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914825.1"
                     /translation="QDSKTDRKLEFGQILWGENQLRKTEIDASQLVSFNSNGKMKGSD
                     GAWKFDYVKGLTLILKDETINNLIVFVGHDWENQTETLLFTGLDKNGCSVWGKKHSKG
                     TILSFCPKINPKE"
BASE COUNT          789 a          559 c          501 g          854 t
ORIGIN      
        1 tgtcaatgtc aggctggcac aattggcagt ataagtccga tttgtgcgct tttcggcagg
       61 agcattatat gtctctgtga ttttttttaa gggtgtaacc tgagataatt tcaccttttc
      121 actaaaatca ccctgatctg aaaccaaacc caatgccgat tgcaaaatga ttggttgatt
      181 gttgtttttt acggtgtaaa tgggtgcgcc gctcaaggtt acacttgctt caatagacaa
      241 ttttccgtcg ggcgaagtta ctgtaagttt tttattggtt gcctgcacca aaagagcact
      301 gaaacaaata aacgcgataa ttagaaaaga tttttgcatg ataaatgatg tgtataaaat
      361 ttcaagacaa agataattaa aaacaggcta ctgctttaga attttttcga tctcagtgcc
      421 actttctgta gttgctttta caatataaag acctgttctt aatgatgaaa cattaatttt
      481 tggttcgcta cccgaggtca gcagcatcga acctgccaac gaaaaaatgt tgacttgttt
      541 tactggtgat tcggattcaa cttccagaaa atcagcacac ggattgggac gaagttttac
      601 ttttctctgt attgtggtct tcaaccctgt gccaacgctg tatttattta aatccaattg
      661 aattttatca aaatcgggca accacgccgt tgcattggaa aagcggatag tgttgtaacc
      721 ttgctttaat gaaatcttat atgtattggt tttcaatgct gtccaattgc ccgaattcaa
      781 cgcagtcaag acagtgtctt taccgttaac cgacatggtg gcagttctgt tttcgccact
      841 aatataagtt attttcaaat tataacttcc gggtgcatta gcataaatat ccctgaattc
      901 aaggtaatta tctgcacggt tacctaacca acctgctttt gcacggccag aacaagtggt
      961 atcgacagaa gcaataccct gattagcaat aaccacgcta ttggctgtca gattgaaatt
     1021 atttatccaa ccgtattcag cttcgaaggt ttccggcaat ttggtttgtg ttccaatcac
     1081 tttcagcatt atcacaccgt gtgatggaac cgttgccgtg tacatcgaat ccatgcttcc
     1141 gaaatcggta tgcgaccaca aatttcgaac ggtggcagga ccaatcaaat tcaaatcttt
     1201 ccattttact gacatggtgg cggctgctgc agttcggttg aataatacaa ctgcgcgctc
     1261 tttgctgagt ttgccattta atggttttgc ccagacttgt aaaccttttg cattatctgt
     1321 gactattttt gcctgcaatc ctgtggtatc ctgattcaca gcaataacct cggcattggt
     1381 caggatattt ttagtggttt gcgaaatggt ggtcatatcg tttccaagca ccaatggtga
     1441 tgacataata caccacatgc taaaatggct tttgtcttct tcggcagtta atccgcgccc
     1501 aacttcaagc atatccatgt cgttgtaatg tccctggcta caataagctg ccagataagc
     1561 atttttatcc agattattaa gtacactaac ccaactcata taaatgtcta ccgaaatacg
     1621 ccacgaatct gcaacggttg taacccatga acccgggaat tgccaacggc aaacattgta
     1681 attaatatcc gtacgaccgg tattattcat ggccgtccga atagccgtgt agcgggcttt
     1741 ctcatctaat ttctgtacta aaccaccaca gtaatctact ttcagaaagt caaatcccca
     1801 gtttctaaat atagtatcaa tatcttgttg gtcacgtccg taaagtccgc caccaatacc
     1861 gcctgtttgg ttattgtatt gtgagccaca ggtattattg ccggcatcgg aataatatcc
     1921 tgctttcaat cctttggaat ggatatagtc agcaagatat ttcattttat gaggaaattt
     1981 cagcgtgtca agtcgcaaac caccattgga atagcggcca ttgaaaaatc catcgtcaat
     2041 gttcaggtaa ttataaccgg cagctagtaa gcccgaagat accatagcat cagcctgatt
     2101 cttaatgatt gattcgttga tatttactcc gaaattattc caactggccc aacccattaa
     2161 cggagatttc aaagtttgag aaaaactttg taagccatac aaaaaaagaa gagtgagtaa
     2221 aagtgttttt ttcataaaca gttgaataaa gcgagtataa aatacaggtt gatagaaagt
     2281 ttgaaccaat tttaattcat tagacaacaa agatacgaca aaaactattt acagcttttg
     2341 gtaaaatttg aaatatcatt cttttggatt aatcttagga caaaatgaaa ggattgtccc
     2401 cttagagtgt tttttacccc aaactgagca gccgtttttg tctaatccgg taaaaaggag
     2461 tgtttcggtt tgattttccc aatcatgacc cacaaaaact atcagattgt tgatagtttc
     2521 atctttcaga atcagcgtga gtccttttac ataatcaaac ttccaggccc catcagaacc
     2581 tttcattttt ccattgctat tgaaactaac cagttgagat gcatcaattt cagtcttgcg
     2641 caattgattt tcaccccaaa gaatttgccc aaactccagt tttcggtcag tttttgaatc
     2701 ctg
//
LOCUS       DATDNM010000539         3592 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2098776, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000539 DATDNM010000000
VERSION     DATDNM010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3592
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2098776"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VI413_09130"
     CDS             <1..185
                     /locus_tag="VI413_09130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914826.1"
                     /translation="VASIWGNQLMSAPLAKEVVSVVITGGFICGISPLQDEVRLIKAS
                     ETIKMNDFLGQGDIIR"
     gene            complement(600..1073)
                     /locus_tag="VI413_09135"
     CDS             complement(600..1073)
                     /locus_tag="VI413_09135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914827.1"
                     /translation="MTKRILLLTFCLIGFINLHVSAQKKENSADSTVEYKVNSLKGIE
                     LKFEAPHMAGYGPHGNGVPFFLDYIDEVRIAPSPTILLKAGVSITPGFFYEDSAALHG
                     EIVDNRGIKVPFCSFGFNFVVEPRWYWNYQKCAQSGKAKLNSGWFLSVPLEISLP"
     gene            1380..2627
                     /locus_tag="VI413_09140"
     CDS             1380..2627
                     /locus_tag="VI413_09140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010799990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 domain-containing protein"
                     /protein_id="HEY6914828.1"
                     /translation="MAIIKPFKGIRPPQNLVEKVASRPYDVLNSEEARTEAEGNAMSL
                     YHIIKPEIDFEPGTDEHEEKVYNKAAENFARFRQEGWLKQDEVEKYYVYAQTMNGKTQ
                     YGLVVCANVDDYMNENIKKHELTRRDKEEDRMKHVRVNNANIEPVFFAYPHQEELDAI
                     VAETIKGTPVYDFVAPGDGFGHHFWVIDNAETIARITELFAGIPSLYIADGHHRSAAA
                     ALVGDEKRKANPNHTGDEEYNYFMAVCFPDNQLNIIDYNRVVKDLNNLTDEEFLAKLA
                     VNFDVELKGSEIYKPNKLHNFALYLSGKWYSLTAKAGTYNDNDPIGVLDVTISSNLIL
                     DEVLGIKDLRSDKRIDFVGGIRGLGELSGRVDSGEMRVALALYPVSMKQLIDIADSGN
                     IMPPKTTWFEPKLRSGLVIHELV"
     gene            2690..>3592
                     /locus_tag="VI413_09145"
     CDS             2690..>3592
                     /locus_tag="VI413_09145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914829.1"
                     /translation="MRLKISYFVFILLAATLLQGCSLKARIKKADKTYAQGEYYVAGE
                     LYKRIYGQISSTEKTLKGRIAFQQAECYRLLNSGRAEQAYINAIRYKYPDSIVFLRYA
                     QVLQRIGKYGDAAANYNIYLKKDSASLLAKNGVAACKNVADWKKTPTRYTVRKADLFN
                     VRMTDNFSPAFLGKAADVLIFTSSRQFNKKTVLKNNTITGLPSNNMFMTRKDAGGKWE
                     KPNILGEEVNTIENDEGVCTFSFDGKVMYFTKARQVVDSEVGTEIFSSNRAGGTWSAP
                     KKIKIFADTTVSVAHPAIAPDGQTL"
BASE COUNT         1093 a          715 c          757 g         1027 t
ORIGIN      
        1 cggtagcttc catttggggc aaccagctta tgtcggctcc tttggcaaag gaagttgtgt
       61 cagtagttat taccggagga tttatttgcg gcatttcgcc tttgcaggat gaagtaaggt
      121 taatcaaagc cagtgaaaca attaaaatga atgatttctt agggcaaggt gacataatca
      181 ggtaatttat cagattaatg gattttaatt tcgcaaatat acaacgttca tttaataatc
      241 gcttagcaca aatcggacaa aaaagaatac aaaatacaca tttcctgttg ccgcctcatt
      301 gcattatgtg ggaaggctca cacataattt aaatgaatta ttttttacct tttaaatata
      361 tgggatgctc tgatttcgag ttgaggtatt atttgtatag taccaaagcg attattttgc
      421 cagtattttt gccactcatc agctgcctga agctcaaaac ttccttctaa gaaccaattg
      481 tttgacaaag catgtctata tcctgttgag attccgaaac tataatacat agtgaagtga
      541 tcacttatcc attttgaatt tttgttataa taaatagttg gtccacatat cagagcagct
      601 caaggtaaag atatttcaag cggtacagaa agaaaccacc cggaatttaa tttggctttt
      661 cctgattgag cgcatttttg ataattccag taccaacgtg gttcaactac aaaattaaac
      721 ccaaatgaac aaaatggaac cttaattcca cgattatcta ctatctcgcc atgtaatgca
      781 gcggaatctt cataaaaaaa gccaggagtt atactaacgc ctgccttcaa aagaatagtt
      841 ggcgatggag caattctcac ttcatctatg taatccagaa aaaatggaac tccattccca
      901 tgagggccat aacctgccat atgtggagct tcaaacttta attcgatgcc ttttaatgag
      961 ttaactttat attcaactgt tgagtcggca gaattttcct ttttctgtgc agatacatgt
     1021 aaatttataa atccaatcaa acaaaatgtt agtaataaaa tccgttttgt catattcaat
     1081 tttttatttt ttttacctga agtggttgaa atctctgttc ctcctgttac ctaaaatccg
     1141 caggttttgt agtcacgcat ctgcggattt taggtacaat tgcatagaag tgatgaggta
     1201 atggttagca tgtcttttcg ttcacaaatc tacaaaaata atttagaaaa tatgcttcga
     1261 caatatggga tattgtattg taaagtaatt ggtcgctcca gctattttac attctgcttt
     1321 ttcaaacttt tttcttacat ttgtgtcctt aaaaaattca aaaaaataaa cttactatta
     1381 tggctattat taaaccattt aagggcattc gtcctcctca aaacctggta gaaaaagtgg
     1441 catcgcgccc ttacgatgtg ttgaattccg aagaagcccg caccgaggcc gaaggaaatg
     1501 caatgtcgtt gtatcatatt atcaaacccg aaattgattt tgaaccggga accgacgaac
     1561 acgaagaaaa ggtatataat aaagctgccg aaaacttcgc cagattccgt caggaaggtt
     1621 ggttgaagca ggatgaggtg gagaaatact acgtgtatgc ccaaacgatg aatggtaaaa
     1681 cccagtacgg actggtagtt tgtgccaatg tggacgacta catgaatgaa aatatcaaaa
     1741 agcatgagtt gacccgtcgc gataaagaag aagaccgcat gaaacacgtg cgtgtaaaca
     1801 atgccaatat cgaacccgtg ttctttgcct atccgcatca ggaagagttg gatgccattg
     1861 tagccgaaac gatcaaagga actcctgtct acgatttcgt ggctccgggc gacggctttg
     1921 gacaccattt ctgggtaatt gacaatgctg aaaccattgc acgcattacc gaactatttg
     1981 ccggcattcc ttcactgtat attgccgacg gtcatcaccg tagcgctgcg gctgctttgg
     2041 ttggcgacga aaaacgcaaa gcaaacccga accacaccgg cgacgaagag tataactact
     2101 ttatggccgt gtgtttcccc gataatcagt tgaacattat tgactacaac cgcgtggtga
     2161 aagacctgaa taacctcacc gacgaagaat tcctggctaa gctggctgtg aattttgacg
     2221 tggaattaaa aggttctgaa atctacaaac caaataaatt gcacaatttt gcgttgtatt
     2281 tgtcgggcaa atggtattcg cttaccgcca aagccggaac ttacaacgat aatgacccaa
     2341 tcggggtgtt ggatgtaacc atttcttcaa atcttattct ggacgaagtg cttggcatta
     2401 aagaccttcg cagcgataaa cgaattgatt tcgtgggtgg tatccgtggc ttgggcgaat
     2461 tgagcggccg tgttgacagt ggcgaaatgc gtgtggcatt ggcactatat ccggtatcaa
     2521 tgaaacaact gattgacatt gccgattcag gaaacattat gcctccgaaa actacctggt
     2581 tcgaacctaa attgcgttcg ggactggtaa ttcatgaatt agtttaaaaa atttgacaac
     2641 agacgactgg cagcagtcca tcatctgttg tctgttgtcc cccaggatta tgcgtttaaa
     2701 aatatcgtat tttgttttta tacttctggc tgcaactctt ttacagggtt gctccctgaa
     2761 ggcgcgtata aaaaaggctg ataaaaccta tgcgcagggc gagtattatg ttgcaggtga
     2821 attgtacaag cggatttacg ggcaaatctc atcgactgag aaaactctta agggacgcat
     2881 tgcctttcag caggccgaat gttaccggct gttgaatagc ggtcgggccg agcaggctta
     2941 tattaatgcc atacgttaca aataccccga ttcaattgta ttcctgcgat atgcccaggt
     3001 tttacagcgc attggtaagt atggtgatgc agctgcaaat tacaacattt acctgaaaaa
     3061 agacagcgcc agcttattgg ctaaaaacgg ggtggctgca tgcaaaaatg tggccgactg
     3121 gaaaaagact ccaactcgct acactgtgcg taaagccgat ttgttcaacg taagaatgac
     3181 agataacttt agtccggcat ttttgggcaa ggcggccgac gtgctaatct ttacttcttc
     3241 ccgacagttt aataaaaaaa cagtgttgaa aaacaatacg attactgggt tgccaagtaa
     3301 taatatgttt atgactcgca aagatgcagg tggaaaatgg gaaaaaccga acattcttgg
     3361 cgaagaggta aacaccattg aaaacgatga aggtgtttgc actttcagct tcgatggcaa
     3421 agtgatgtat ttcaccaaag cccgccaggt ggttgactcc gaagtgggaa ctgaaatttt
     3481 ctcctcaaac agagccggag gaacctggag tgctccaaag aaaataaaaa tttttgccga
     3541 tactacggtt tccgttgctc atcctgctat tgcacccgat gggcaaacgc tt
//
LOCUS       DATDNM010000540         4634 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_176322, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000540 DATDNM010000000
VERSION     DATDNM010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4634
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176322"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            410..2215
                     /locus_tag="VI413_09150"
     CDS             410..2215
                     /locus_tag="VI413_09150"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEY6914830.1"
                     /translation="MKKKLLSISLFVAATLFCGTGAKAQTLLYSNDFESGLNGATIVG
                     NGVLEASGDAAHGQVFHNAFGGQATRANYLTLPATIFADLKTAGTNALSISFWVNKGT
                     ATGYYWCPIFSAYAAAPPAGGNGTPMMVLQTRGVAQTNLDGTWCDYTNAQNVKGTNAA
                     STTWIDDANWHFYTATFTTTSVKVYIDGAVMNEWTLNGTAAGSSDAGLFSIGSGLPYV
                     CLGGNQAWNWNDPDPAFLYDKLKIYSGALTTAQINSLIVSDGLVAPVVSASKSALYFD
                     DKYSSEAIVVNGANLSNDITLTAPAGITLSQTTISKSAATDVTVTATWNGTTSVNGII
                     TLTSGASVVNISVKTSTNSCYTPAYATGNMIADPTFSAATLTAGGFGGWGSPGIVYKN
                     AYCGRGTAYVAGNCTGSIDRSLNAANGNALVAGNKYRLRALINSKATTGSTFQIQVEG
                     VNAGTSIFFPIGNTNGWKQIDTTFTCGATVTEHGIYINACTSVKPAATDTCFIDNYEL
                     YNITGLTTGVNNATVSKVTNFVRNNKVVSSFNLDAATEVSVSLYTMNGMLIESKKSMG
                     QGGQNEKVLDTKLSAGVYIVKTSIDGKFTVNKIIL"
     gene            complement(2344..2865)
                     /locus_tag="VI413_09155"
     CDS             complement(2344..2865)
                     /locus_tag="VI413_09155"
                     /inference="COORDINATES: protein motif:HMM:NF016121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEY6914831.1"
                     /translation="MYKRMCLALILVSAVAFAQEKPRDGKEKKPVLHEVSNKDIVQSV
                     YPGAAKVEKVNDYWYRILDEKNKTLGFAMSSASFCKDVKGYNDLTPVMILVDKSKTIK
                     KVALLTNWETQRFVSKLQNKGFFDLWVGKTLKEAKNIQVDARTGATYTAQAVSKNVEF
                     LLNTGTKKLPRWN"
     gene            3344..>4634
                     /locus_tag="VI413_09160"
     CDS             3344..>4634
                     /locus_tag="VI413_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009130149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RICIN domain-containing protein"
                     /protein_id="HEY6914832.1"
                     /translation="MRKNNFLVIILFLGFGITSIKAQTTSASNNLVAQPIPDRTVSYS
                     VTDAGVSKPIIWGLDLAWLSESNIRRGIAFMGADRVDVVRASFQPTLPLVNGDLQTAQ
                     INDLNTRLNLIDLTGTKTKVVLNCDHPSVDASYIGNPVNWALLIDATTKRVQARGRKV
                     ISVSPFNEPDYGWGQYSGSNGQLDFYNIAGELRKNTRFDSIRICGGNTLNCDQALPWY
                     NYLKARLEEGNTHQLAGSFDNFANFYQTVRANGDHATGDELHNVMEAMVGVEYGLQTG
                     IWWGTAELARGEFVKASDGMRLGYAEHRPNWTAASVYRGIDGKVQAFGGTSERQGVTT
                     TYRFVSKDRDVYYDGYGPQREYTMVMPGGTGYQVGQTNAERVVNITWGADIQPVINGR
                     YILVNRMSSKVLAVPLGSTTGGTALRQYSSTGATYQQW"
BASE COUNT         1383 a          891 c          978 g         1382 t
ORIGIN      
        1 ctgaaagggc tgaaagccgg ggatgaagta gccgtatttg attgctcggg aaaattgttg
       61 atttctaaaa ctgccaaatc cgatacaatg ccactaacct ttgcaggaat agggattgtg
      121 aaggttaagt ctttgagaga ctttgtaata atcaagtctg tatttaaata agttgtatcg
      181 cgaaattaat aaataaggat atttgtaccc ccattttacg atttcgtgct ccactaactc
      241 cggattaatc attttatttg taaaaataat ttagcgcgcc agttgaagtc attgattcga
      301 ttcatttatc gtagcattta ttgacgaaaa ttcttctgat tatcaggata ttattaatca
      361 gatttttact ttttctttaa tataaaaaca ccaattaaat ttatttatca tgaaaaaaaa
      421 actactatca attagtttgt ttgtcgcagc aacacttttt tgcggcacag gtgccaaggc
      481 acaaacttta ctttactcca atgattttga aagcggatta aacggagcaa ccatcgtagg
      541 taacggagtt cttgaagctt ccggtgatgc tgctcacgga caagtgtttc ataatgcatt
      601 cggaggacaa gcaacccggg ctaattattt aacgttaccg gcaactattt tcgctgattt
      661 aaaaacagca gggactaatg cattaagtat ttcgttctgg gtaaataaag gtactgcaac
      721 tggttactac tggtgtccta ttttctcggc ttatgctgct gcacctcctg ccgggggtaa
      781 cggaacgcca atgatggtgc ttcaaacacg tggagtagca caaacaaatc tggatggcac
      841 atggtgtgac tatacaaatg ctcaaaatgt aaaagggaca aatgctgcga gcactacctg
      901 gatagatgat gccaactggc atttttacac agccactttt accactacaa gtgtgaaagt
      961 atatattgat ggagctgtta tgaatgaatg gactttgaat ggaactgccg ccggtagctc
     1021 tgatgcagga ttgtttagta ttggttctgg tttgccttat gtttgtttgg gtggaaatca
     1081 ggcatggaac tggaatgatc ctgatcctgc atttctatac gataaattga aaatatattc
     1141 cggtgcattg accacggcgc agatcaattc tcttattgta tcagatggtt tagtagctcc
     1201 tgtggtatct gcaagtaagt cagctttata tttcgatgat aaatatagct cggaagcaat
     1261 cgtagtaaac ggtgctaacc tgtcaaacga tataaccctt actgctcccg caggtattac
     1321 gcttagtcag actactatct caaaatcagc agcaacagat gtaactgtta ctgccacatg
     1381 gaatggaaca accagcgtaa acggaatcat tacgttaacc agtggagctt ctgttgtaaa
     1441 tatttctgtg aagacatcaa ccaactcttg ttatactcct gcttatgcta caggcaatat
     1501 gattgctgat ccgacattta gtgcggcgac acttacagcc ggaggatttg gtggctgggg
     1561 ttcacctgga attgtttata aaaatgcata ttgtggtaga ggtactgctt atgtagcagg
     1621 taattgtacg gggtctattg acagaagttt gaatgctgca aatggaaatg ctttggtagc
     1681 tggtaataaa taccgcctcc gtgcattgat taattccaaa gctacaacag gctcaacttt
     1741 ccaaattcag gtagaaggag tgaatgctgg tacaagtatc ttcttcccaa ttggaaatac
     1801 aaatggctgg aaacaaatcg acactacatt tacttgcggg gcaacagtaa ccgaacatgg
     1861 tatttatatc aatgcatgta cttcggtgaa acctgcagct actgatacct gctttattga
     1921 taattatgaa ctttataata taacaggttt gactaccggt gtaaataatg caacagtaag
     1981 taaagtaacc aattttgttc gcaacaataa ggttgtttca agctttaatc ttgatgctgc
     2041 tacagaagta agcgtttcgt tatacaccat gaatggtatg ttgattgaat caaaaaaatc
     2101 aatgggccag ggaggtcaga atgaaaaagt attggataca aaactttcag caggggtata
     2161 tatagtgaaa acttctattg acggtaagtt tactgtgaat aagattatac tttaattgcc
     2221 atttgtcaaa ttaaaaaggt gcagttcata ctgcaccttt ttttgttact aaaacctttt
     2281 cttttttata cctttgttgg aatagacaga tgattattca agctgttctc tttcagaaaa
     2341 aatctaattc cagcggggta gcttttttgt accggtattt agtagaaact ctacattttt
     2401 ggaaactgcc tgagctgtat atgttgcacc ggtacgtgca tccacctgga tgtttttggc
     2461 ttctttcaac gttttcccta cccataaatc aaagaaacct ttgttttgga gcttgctcac
     2521 gaagcgctgt gtttcccaat ttgtcagaag agctactttt ttaattgtct tgcttttgtc
     2581 taccaaaatc atgaccggag tcagatcatt atatcctttt acatctttgc aaaacgaagc
     2641 actcgacatc gcaaatccca gcgtcttatt tttctcatcg agtatgcgat accagtaatc
     2701 attcactttc tcgacctttg ctgcgccggg ataaacgctt tgtacaatgt ccttgtttga
     2761 cacttcatgc aataccggtt ttttttcttt cccatcccgg ggcttctctt gcgcaaatgc
     2821 aactgcagac accagaatca acgctaaaca cattctttta tacataaaaa acgactattt
     2881 aattatacac ttctaactaa ttaatccgac ggattttgct ttattggaca ggataagggt
     2941 tatcgggttt aatagcattt gaatttttta agaacaaaaa gaaatctcct ctccctccaa
     3001 ataaatacac ctcaaaaaac aacatttcta gaattataaa tatatttgct gctaaaattg
     3061 ttctatttca atatggttat tcttcttttg cataattcac gttgtaaaag ccggatccta
     3121 tagaaaagta tataaaaaca tggaaatgca acgacacatc agaggtatag ctgaaaaaat
     3181 cacaggataa atagggcttg cagaatttct tacctatatt tgacgaattt atgacctaaa
     3241 agttctgaaa ttatacccat ttttgcaaaa gtaaagtata agtgggagtt tctgccgata
     3301 gaactgccgt tacgttaacc tttgttgaat aagaattaga tttatgagaa aaaacaactt
     3361 cttggtcatc atcctttttt taggatttgg aattacctca ataaaagcac aaaccaccag
     3421 tgcaagtaat aacctggttg cccaaccaat tcctgaccgg acagtatcat acagcgtcac
     3481 cgacgccggt gtctccaaac caataatctg ggggttggac ctggcatggc ttagtgaatc
     3541 aaacatccgc cgtggcatcg cgtttatggg agccgataga gtggatgttg tgagagcatc
     3601 ttttcaacct acacttccgt tagtcaatgg agatcttcag actgcgcaga taaacgatct
     3661 gaatacccgt ctaaacctga ttgatttgac cgggacaaaa acaaaagtcg tattaaattg
     3721 tgatcacccc agcgttgatg cttcgtacat aggaaatcct gtgaattggg cattgcttat
     3781 cgacgctaca acaaaacgtg ttcaggcgag gggccgaaag gtaatctctg tttcgccttt
     3841 taatgaacct gattatgggt ggggacaata ttcgggctca aacgggcaac tagattttta
     3901 taatatcgct ggagagttga ggaaaaatac acgcttcgac agcattcgca tttgtggtgg
     3961 caacaccctg aactgcgacc aggctttgcc ctggtacaac tatttaaaag cacggttgga
     4021 agaaggaaat acacaccagc ttgccggtag tttcgataat tttgccaact tttatcaaac
     4081 ggtgagagct aatggcgacc atgccaccgg cgatgaatta cacaatgtaa tggaagctat
     4141 ggttggggtt gaatatggtt tgcaaaccgg aatttggtgg ggcacggcag aacttgcccg
     4201 cggagaattt gtaaaagcca gcgacggtat gcgactgggt tatgccgagc atcgtccgaa
     4261 ctggactgcc gcatcggttt acaggggcat tgatggcaaa gtgcaagctt ttggcggtac
     4321 ttccgaaaga caaggcgtta caaccacata ccggtttgta tcaaaggaca gggatgtata
     4381 ctatgatggc tatgggccgc aacgggaata cactatggta atgcctggtg gtaccggata
     4441 tcaggtggga cagaccaatg ccgaaagggt tgtaaatata acctgggggg cagatattca
     4501 gccggttatt aacggacgct atatattggt aaatcgtatg agtagtaaag ttctggcagt
     4561 tccactcggg tcaacgaccg gaggtacagc ccttcgtcag tacagtagta cgggtgcaac
     4621 ttatcaacaa tgga
//
LOCUS       DATDNM010000541         2880 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_923920, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000541 DATDNM010000000
VERSION     DATDNM010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_923920"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..559)
                     /locus_tag="VI413_09165"
     CDS             complement(<1..559)
                     /locus_tag="VI413_09165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005826070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY6914833.1"
                     /translation="MRITRITIYGIFCLILCLNLAQAQKPVYLDVNQPIEKRVEQALS
                     LMTLEEKVAMCHAQSKFSSPGVPRLGIPEVWTDDGPHGIREEVFWDKWSGAGWTNDSC
                     TAFPALTCLAASFNPRMALNYGKAIGEEARYRNKNVLLGPGVNIYRTPLNGRNFEYMG
                     EDPYLASRMVVPYVQGVQQNSVAVCV"
     gene            911..1663
                     /locus_tag="VI413_09170"
     CDS             911..1663
                     /locus_tag="VI413_09170"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEY6914834.1"
                     /translation="MTLADTNITTVFETLPSISVDCVIFGYEENALKVLVRREFVPDE
                     GQIYLEWKLPGNHVRRNEDIDETASRILKEQTGLENIFVKQFMVFSDPNRLYRRKRDY
                     EWVKPRLGDERVITVGFYSLININDIEKTSLIEDAKWANAYEIKELMFDHQEIFEEAF
                     KKLRYDLLHEPLVFELLPEKFTLTQMQRLYEAIFNTTYDKRNYRRKVNKMAYLIPLDE
                     IQTGVSHKPARLYSFDRDIYEKTRTERFDFRV"
     gene            complement(1821..>2880)
                     /locus_tag="VI413_09175"
     CDS             complement(1821..>2880)
                     /locus_tag="VI413_09175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914835.1"
                     /translation="TTLPSNITVAAGNTSTAGVVSYIGTDNTVNVSSNMFKPATSVGG
                     TGVVDLNLFPATDNYSVTWKEYYSTSVGKEAMLLRGSGTSGAYTGIKLGYFFAVDNTY
                     SGTQQRLRVFKTNSTTSVQLGSTVYVSLPGAGVARWYRARVHGSSIKYDYSTDSLTFI
                     NVISVTDADYASGTNQCVWGFNVGTSPAIHFDNITFVPYKIIVTGNTSYVYNGLAQGP
                     NVCILSGYIGTVSYNYAGTGATIYAFSSTAPTNVGTYQVIATVADATYGNVSSAAFTF
                     SIDPTTGVRQEESGIIRVNVSGKTLSVTGIDRYAIYNIEGVKVADITTNASGKSLLLP
                     VGAYIVKAGAIVKKVIIR"
BASE COUNT          910 a          586 c          543 g          841 t
ORIGIN      
        1 tcacacacac cgccacactg ttctgctgaa cgccctgaac ataaggcaca accatacgcg
       61 aagccaaata cggatcttca cccatatatt caaaattgcg accattaagt ggagttctgt
      121 agatatttac acccggaccg agcaaaacat ttttattgcg atagcgggct tcttcaccta
      181 tggcttttcc ataattcaaa gccattcgag ggttaaaact tgcagccagg caggttaatg
      241 cgggaaatgc ggtacatgaa tcgtttgtcc aaccggcacc actccattta tcccaaaaca
      301 cttcttcgcg gattccgtgg ggaccatcat cggtccaaac ttccggaatt ccaaggcggg
      361 gcacacccgg ggagctgaat ttagactgag catggcacat ggccactttt tcttcaagtg
      421 tcatcaacga aagagcctgt tcaactcttt tttcaattgg ctgatttacg tctaaataaa
      481 ctggtttttg agcttgtgcc aaattaaggc ataaaatcag gcaaaaaata ccataaatag
      541 taattcgtgt gattctcatt ttgtattttg atagttggtt ttgttttaga aaacaataaa
      601 ataagacaac actaatgtat taacaacata caactttgtt atgttttcta aaagtgttgg
      661 tgttttgaaa cattttttgt tttgtgcata aattcaatat atgcaaaaca atagtgtcat
      721 aaacacaata agcttacaga gtgcaaatat atagggtatt ttttttatat ccaaacaaaa
      781 gtgtgtttat tttacactaa gtacaaagaa ttattctgac gtcatttttt aattgtgtgt
      841 ttgtaacgcg tactaatcta ggtatcatat aatttatata tctttgcaga atattcagaa
      901 caaaaaaaaa atgacattag cagacacaaa cattacaacc gtttttgaaa cactaccttc
      961 catttcagtc gattgcgtca ttttcggata tgaagagaat gcattgaaag tattggttcg
     1021 gagggaattc gtacccgatg aaggtcaaat ttaccttgaa tggaaattac ctggcaacca
     1081 tgttcgccgg aatgaagata tagatgaaac tgcttcgcgt attctgaaag aacaaaccgg
     1141 cctcgaaaat attttcgtaa aacaattcat ggtattcagc gatcctaacc ggttgtacag
     1201 acgtaaacgt gactacgaat gggtgaaacc gcgcctggga gatgagcgcg taattactgt
     1261 tggcttttat tcactcataa acattaacga tattgagaaa accagtctga ttgaagatgc
     1321 aaaatgggca aatgcgtatg aaatcaagga attaatgttc gatcaccagg aaatttttga
     1381 ggaagcattc aaaaagcttc gctacgacct gcttcatgaa ccattggttt ttgaattatt
     1441 gcctgagaaa tttaccctga cccagatgca aagattatat gaagccattt tcaatacgac
     1501 ttacgacaaa cgaaactatc gtcgcaaagt aaataagatg gcttatctta ttccactgga
     1561 cgaaatccag accggagttt cgcacaagcc ggcccgcctg tattcattcg accgtgatat
     1621 ttacgaaaaa acacgtacgg aacgatttga tttcagagta taaaaaaact attaaatgtg
     1681 gctccttagc cataggtcac gtttaacact tagcagagtt tcacccctat tcatatggaa
     1741 taaaacatgg tgaataaaca cctgaaaaga attatcagtc tagcaactga aaaaaaaatt
     1801 cgtcgaattt gcttattaaa ttaccttata ataacttttt tcacaattgc acctgccttc
     1861 actatgtaag cacctacagg cagaagcaga gatttacctg aagcgtttgt tgttatatca
     1921 gccactttca caccctcaat attatagatt gcatatctat caatccctgt aacagataat
     1981 gttttgcctg aaacatttac tcggattatg cctgactctt cctgacgaac accagttgtt
     2041 gggtcaatag aaaatgtaaa ggcagcggaa ctaacatttc catacgttgc atcggcaact
     2101 gtggcaatta cctgataagt gccaacattt gttggtgcag tacttgaaaa ggcgtagatt
     2161 gtagctcccg tgcctgcgta gttatagcta actgttccga tgtaccctga aagtatgcag
     2221 acgtttggtc cttgcgccaa accgttgtaa acatatgatg tattgcctgt aactataatt
     2281 ttatatggta cgaaagtaat attgtcgaaa tgaatagccg gactggttcc aacattgaat
     2341 ccccaaacac attggttggt accggaagca taatcggcat cagttaccga aatgacattg
     2401 ataaaagtaa gactgtcggt agagtaatca tattttatag atgatccatg taccctggct
     2461 ctgtaccaac gagctactcc cgctcctggt aatgaaacat agacagtaga accgagctgt
     2521 acggatgttg tactattcgt tttgaaaacc cggagccgtt gttgcgttcc gctatacgta
     2581 ttgtcaacag caaaaaaata acccaattta attcctgtat aagcgccact tgtaccactg
     2641 cctctcaaaa gcatagcttc cttgccaacg ctggtactgt aatattcttt ccaagtaacc
     2701 gaataattat cggttgcggg aaacagattc agatcaacaa cacctgtacc accaacactg
     2761 gttgcgggtt taaacatatt acttgatacg tttacagtat tgtccgtacc tatatatgaa
     2821 acaacacctg cggttgaagt attgcctgct gctacggtta tgttcgacgg aagtgtagtc
//
LOCUS       DATDNM010000542         3451 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_497129, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000542 DATDNM010000000
VERSION     DATDNM010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3451
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497129"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..488)
                     /locus_tag="VI413_09180"
     CDS             complement(<1..488)
                     /locus_tag="VI413_09180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005926570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family ligand binding domain-containing
                     protein"
                     /protein_id="HEY6914836.1"
                     /translation="MKNAAVMNYNDLGVEFKYLIVSEKDKKFGMSVNTVGFQSIQPNT
                     PYPLTDHPSGYFFNAQKGRVLREYQFLYITKGKGVLSFDNETFIPISKGRLFVIFPGQ
                     WHTYHPSTETGWNEYYIGFEGPIFDNIVENSFISKGNQILEVGFNEELVNLFTRAIEV
                     AEV"
     gene            complement(947..2254)
                     /locus_tag="VI413_09185"
     CDS             complement(947..2254)
                     /locus_tag="VI413_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007660389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEY6914837.1"
                     /translation="MRLYKNALIALLFAGIIPCVSAQNKMTAEEAAKIIADRIVNSTT
                     RLFENRKTGETFTSVKDIPLSRDVQVQSKYNQWHYTIGVTNIALMELGDKLQDKKYEQ
                     YVLKNMNFVFNEGNMDYFRKLYDQALEKGGWTAVRDINWCMLFRGKRLDDNGPMGASL
                     IELQQRYPNSSFLNYINETANHLNNSEPRLKDGTIARIWPHENTIWADDSFMAISFLC
                     RMGQMTNDNKYFTDAANQVLKYNKYLWCPEKQIYYHCYHTDNKEHGVAHWSRANGWLF
                     MATADLLSRMPKNHPLREKVIKNFQQQASGVARYQGKSGLWHQLLDKEDSYEEITGTA
                     MFVFGIAKGVKEGWLHPDFIYVAQQGLKGMMSKITPEGDVTSICVGTGIMPSLQYYYT
                     RPTQENDPMGEGPVLRALVEMMNAPKYSEIKAEDQYDKIGKKK"
     gene            complement(2389..3420)
                     /gene="rhaT"
                     /locus_tag="VI413_09190"
     CDS             complement(2389..3420)
                     /gene="rhaT"
                     /locus_tag="VI413_09190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose/proton symporter RhaT"
                     /protein_id="HEY6914838.1"
                     /translation="MNTLIGLLIIAIGSMGQSSSYVPIKKVKSWAWESFWLVQGIFAW
                     LVFPYLGALLAVPEGHTLMEVLSSGDGAAWKALFYGALWGIGGLTFGLSMRYLGVALG
                     QSIALGTCSAFGTIIPAMMVGTDLFSGKGLILLIGVSVAIAGIAVIGYAGGLRSQNMT
                     EEQKKAAVKDFALGKGLLVALLAGVMSACFSLGLEAAEPIKTAAIGLGAKALYAGLPA
                     ILLITVGGFITNAVYCLFQNFRNNTIKDYFSVSGGVFTNNILFCALAGILWYSQFFGL
                     ALGKSFLTEGSVMMAFSWSILMSLNITFSNVWGILLKEWKGVTNKTIAVLVTGMAILI
                     ISLIIPNLF"
BASE COUNT         1015 a          699 c          650 g         1087 t
ORIGIN      
        1 acttcggcca cttcaattgc gcgggtaaat aaatttacca attcctcgtt gaaaccaacc
       61 tccagtatct gattgccttt tgaaataaat gaattttcaa ctatgttgtc gaaaatagga
      121 ccttcgaaac caatataata ttcattccat ccggtttctg ttgatggatg ataggtgtgc
      181 cattgtcccg ggaaaattac aaaaagacgg ccttttgaaa tcggtataaa agtttcatta
      241 tcgaatgata aaaccccttt tcctttggta atgtaaagga attgatattc ccgaagcaca
      301 cgtccttttt gtgcattaaa aaaataaccg gatggatgat cggttaacgg gtaaggtgta
      361 tttggttgaa tggattgaaa tccaactgtg tttacagaca tcccgaattt cttgtctttt
      421 tcgcttacaa tcaggtattt gaattcaaca cccaaatcat tgtaattcat aaccgccgcg
      481 tttttcattt tttctgatta gaattcaata ataattgttt ttttgaccgc tgtgctgcac
      541 tatgctgttt gtaatagaaa aaatataaga tagctgtgat aatccaaaat aacgtgcccg
      601 cacacagtat catttcaggc aaaaatacgt atttactttg atagtataaa actgtgggat
      661 tttatgtgtg cgaacacgga atgctgagtt ttgagtacaa tttgctgata tatagttgtt
      721 tgttcgcttg catgagaggc aaattaaatg ttgtttgaat aaaaacatat tcaataacat
      781 aaatttggct caaaataaat gatattttaa gtcaaattac ccatgttctt tccacaaaat
      841 taatcaaaaa cagtatttta atcaatttgt tcctggatgc tggcgctttt atatctatga
      901 atgtgaactg gaaaattgta ctcgaaccgg taaaataata caatgattat ttctttttcc
      961 cgattttgtc atattggtct tcagctttta tttctgaata ctttggggca ttcatcattt
     1021 caaccaaagc ccggagaaca ggaccttctc ccataggatc gttttcctga gtaggacggg
     1081 tgtagtaata ttgaagtgac ggcattattc cagttccaac acaaatggat gttacatctc
     1141 cttcgggagt tatttttgac atcattcctt tcagaccttg ttgagctacg tagataaagt
     1201 cgggatgcag ccagccttct ttaacgccct tggcaattcc gaaaacaaac atggctgttc
     1261 cggtaatttc ttcgtaggaa tcttctttgt cgagtaattg atgccaaagt ccgcttttac
     1321 cctgatagcg tgcaactccg ctggcttgtt gttggaagtt tttaattacc ttttcccgta
     1381 aaggatggtt ttttggcatg cgcgacagta aatcggctgt tgccataaac aaccagccgt
     1441 tagcacgact ccagtgtgca actccgtgtt ctttattgtc ggtgtggtaa cagtggtaat
     1501 aaatctgttt ttccgggcac cacaggtatt tgttgtattt caatacctga ttggctgcat
     1561 ctgtaaagta tttgttatcg ttggtcattt ggcccatccg gcacaaaaac gatatagcca
     1621 taaacgaatc atcagcccaa attgtgtttt cgtgcggcca aatgcgggca attgttccat
     1681 ctttcagccg gggttcgcta ttatttaaat gattggccgt ttcgttgatg taattcaaaa
     1741 atgatgagtt ggggtagcgt tgttgaagtt caatcagact ggctcccata ggtccattgt
     1801 catcgaggcg tttgccacgg aaaagcatgc accagttaat gtcccgaact gctgtccaac
     1861 cgcctttttc aagggcttgg tcgtatagtt ttctgaaata atccatgttc ccctcattga
     1921 aaacaaagtt catgtttttc aaaacatatt gttcgtattt tttgtcctgt aacttatcgc
     1981 caagttccat aagtgcaata ttagttacac cgattgtata atgccattga ttgtattttg
     2041 actgaacctg tacatcgcgc gaaagcggaa tgtcttttac gctggtaaat gtttcgcctg
     2101 tttttctgtt ttcaaaaaga cgtgtagtcg agtttacaat ccggtcggca atgatttttg
     2161 cggcttcctc ggctgtcatt ttgttttgag cagatacaca gggaattatt cctgcaaaaa
     2221 gcaatgcgat cagagcattt ttatacaatc tcataataac ttgaatttgt tttgaataat
     2281 aaagtttggt ctaaagcttt gaagtttgag aaaaaagagt tcaaatttca ccgagaggat
     2341 aaaataatga actcttttat atttgattat tgtctaaaat ccattgcttt agaataagtt
     2401 aggaatgata agtgatataa tcaaaattgc cattcctgtt acgagtacag cgatagtttt
     2461 gttagtgacg cctttccact ctttcaataa tatgccccac acattgctga atgtgatatt
     2521 cagtgacata aggatgctcc atgagaaagc catcattacg cttccttcag taaggaaact
     2581 tttgcctaaa gccaatccga aaaattgaga ataccaaagg atgccggcca atgcacaaaa
     2641 taagatatta ttggtgaata caccgcctga aacgctgaaa tagtctttga ttgtattgtt
     2701 cctgaaattc tggaacaagc aatatacggc attggtaatg aaaccaccaa cggttataag
     2761 taaaatagct ggcaatccgg cataaagagc tttcgctcct aaaccaatag ctgcagtttt
     2821 aattggttct gctgcttcca gaccaaggct gaaacaagca ctcataacac cggccaataa
     2881 ggcaaccaat aaacctttgc ccagcgcaaa atcttttacg gctgcttttt tctgttcttc
     2941 agtcatgttt tgcgaacgca acccgccggc atacccaatc actgctatac ctgcaatagc
     3001 cacacttaca ccgattaaca aaataagacc tttgccgctg aaaagatcag ttccaaccat
     3061 cattgccgga ataattgtac caaaagctga gcaagttcct aaggcgattg attgacccag
     3121 tgcaacgccc aaatagcgca tgcttaaacc gaaagtcaaa ccaccgatac cccaaagtgc
     3181 tccataaaac agagctttcc aggctgctcc atcgcccgac gaaagaactt ccattagtgt
     3241 atgtccttcc ggaacagcga gcaatgctcc aaggtatgga aaaaccaacc aagcaaaaat
     3301 tccctgaact agccagaaac tttcccatgc ccaacttttt acttttttga taggcacata
     3361 cgagctcgat tgccccatgc tgccaatggc aataattaat aatccgataa gtgtattcat
     3421 gattctttgt ttacaattag aaattgatgg t
//
LOCUS       DATDNM010000543         4011 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1672483, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000543 DATDNM010000000
VERSION     DATDNM010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4011
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1672483"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            265..351
                     /locus_tag="VI413_09195"
     tRNA            265..351
                     /locus_tag="VI413_09195"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:299..301,aa:Ser,seq:gct)
     gene            474..1700
                     /locus_tag="VI413_09200"
     CDS             474..1700
                     /locus_tag="VI413_09200"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6914839.1"
                     /translation="MRFDELPLCDAVLDGLQAMNFKEATPVQAETIPVILAKRDVIAC
                     AQTGTGKTAAFILPLLHNLQSEPHTEDKVNAIIMAPTRELAQQIDQQMEGFSYFTSFS
                     SVAVYGGNDSAAWDVQRRGLQKGADVVIATPGRLLSHINLYDIDFSHVKYFILDEADR
                     MLDMGFFDDIMQVVNRLPKDRQTIMFSATMPPKIRLLAKTILNDPAEVKIAVSRPPES
                     IMQTSYICYEAQKQGIIRHLFAEQEANKVIIFSGSKLKVKELFKTFRQMGLSVGEMHS
                     DLDQAQRDHIMHEFKNNRVSILVATDIVSRGIDIDDISLVINYDVPHDAEDYVHRIGR
                     TARASAKGMSITFVSEEEQYKFKQIEDFLEKDIYKIPMPVELGEAPEYKPELHRFGHK
                     KFASGKGKFHRKKPNK"
     gene            2148..3143
                     /locus_tag="VI413_09205"
     CDS             2148..3143
                     /locus_tag="VI413_09205"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HEY6914840.1"
                     /translation="MKSAFPYKLLSGQQINDKINNLGSVGAPFLFVIDFKAESGYVME
                     EIELDKHFVQIEFNQQESGIKSRKAGRIEWETCPVSLDDFKPRFDFVVEQIHKGNSFL
                     TNLTQPTEVKTNLSLLELFQYGSAKYKLWLNGLFTVLSPETFVTIRGNRISSFPMKGT
                     IDASIPDAEVIILNDPKEKAEHATIVDLIRNDLSLVAEQVEVKRYRYIDKLTTNRQDL
                     LQVSSEVSGLLPENYRERLGDILFALLPAGSICGAPKPKTLEIIEQAEGYKRGFYTGI
                     CGWFDGENLDSAVMIRFVEQNGDKLIFKSGGGITSQSELKKEYEELIQKVYVPIR"
     gene            3127..3720
                     /locus_tag="VI413_09210"
     CDS             3127..3720
                     /locus_tag="VI413_09210"
                     /inference="COORDINATES: protein motif:HMM:NF013247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEY6914841.1"
                     /translation="MCRFVESIKLKDGVFYRLKLHQERVNKAFAACYPTEEPISIFEN
                     LNQLIVPQEGIYKCRMVYDEDVQLLELVPYERREIRTLKLVETNLESLAYKLEDRTGF
                     NAAFAQRGFCDDVLLVKNGLLTDTSYCNIALYDGQNWFTPLTPLLYGVNRAELLAQEI
                     LIEKDITVEELKNYQKIAMFNAMIEFGEMVLDIDKIF"
     gene            complement(3746..>4011)
                     /locus_tag="VI413_09215"
     CDS             complement(3746..>4011)
                     /locus_tag="VI413_09215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6914842.1"
                     /translation="PLILMDEPSSALDAEAELQIIDSLKKLSHKKTAVIISHRLTTVQ
                     WADLIYFFHKGEVVESGNHKELMALNGKYFSLFQTANNRLTQD"
BASE COUNT         1159 a          733 c          897 g         1222 t
ORIGIN      
        1 tttacctgct tcttttgttt cttttttgtt gtcatgattt tgctaaaaat ctttaggttt
       61 atttgtgtta caaaaatacg gatttgtttt gaaatagaga taaagaaatt aaaatggaat
      121 tatttaaaga atgtttttgt aatgtaaaat acagactttc aattacaaat aattatgaat
      181 tgcaaattat gcattgcgaa ttgcgaaaat ggtttgtata attgaaaatt ccttcctata
      241 tttgcacccg ctaaagcgaa gtttggaagt ttgggtgagt ggctgaaacc accagtttgc
      301 taaactgacg tacgggcaac cgtaccacga gttcgaatct cgtagcttcc gctgaaacgc
      361 cggttactga aaagtagtcg gcgttttttg tttagccggt atttaggttg aagctcattt
      421 tattggctat cggtttaaat tgcgtatctt tgcaggatat taatatattt tccatgagat
      481 ttgacgaact tcctctttgc gatgctgtgt tagacggctt gcaagctatg aactttaaag
      541 aagccactcc tgttcaggcc gaaactatcc ctgtaatttt agcaaaacgt gatgtaattg
      601 cctgtgcaca aaccggaaca ggtaaaactg ctgcttttat tttaccgctt ttacataatt
      661 tgcaatcaga accccatact gaggataagg tgaatgctat tattatggct ccgactcgcg
      721 aattagccca gcaaattgac cagcaaatgg aaggcttctc ctatttcacg tctttttcat
      781 cagtagccgt atatggcggt aacgattcag cagcatggga cgtgcaacgc cgtggtttgc
      841 aaaaaggagc cgatgtggtt attgccactc ccggccgttt actttcgcat atcaatctct
      901 acgacattga tttttcgcac gtaaaatact tcattctcga tgaagccgac cgtatgcttg
      961 atatgggttt cttcgatgat attatgcaag tggtaaaccg tttgccgaaa gaccgtcaga
     1021 ccattatgtt ttcggctacc atgccgccta aaatacgttt gttggccaaa actattttga
     1081 atgaccctgc agaagtgaaa attgctgttt cccgtccgcc ggaaagcatt atgcagacgt
     1141 cttatatttg ttatgaagca cagaaacagg gaattatacg ccatttgttt gcggaacagg
     1201 aagccaataa agtaattatt ttctcgggat cgaaactgaa agtaaaagag cttttcaaaa
     1261 cgttccgcca aatgggactt tcggtgggtg aaatgcactc cgacctggat caggcacaac
     1321 gcgaccatat aatgcacgag tttaaaaata accgtgtcag cattctggtg gctaccgaca
     1381 ttgtttcgcg cgggattgat atcgatgata tttcattggt aataaactat gatgtgcctc
     1441 acgatgccga ggattatgtt caccgtatcg gccgtacagc gcgtgccagt gccaaaggaa
     1501 tgtctataac ttttgtgtcg gaagaagaac aatacaaatt caagcagatt gaagattttc
     1561 ttgaaaaaga catttataaa attccaatgc ctgtagaact gggcgaagca ccggaatata
     1621 aaccggagtt acaccgtttt ggacataaaa aatttgcttc aggcaaaggg aaatttcatc
     1681 ggaagaaacc gaataaatag attgtatatt ttgattttta cagacggggt gacttcaggt
     1741 tgccccgtct gttgtatgta aagatggcac tcatgacagt ttggtagtct tcctgtactg
     1801 tcgagatgtc ttccggactt gtcgagatga ctttcggact tgttgagacg tcttccggta
     1861 ctgtcgagat gtcttccgga cttgtcgaga tgtcttcctg tactgtcgag atgacttccg
     1921 gatttgtcga gatgtctttc gaacttgtcg agatgacttc cgaacttgtt tagatgactt
     1981 ccggtattgt caagatgtct taactgtttg ttgagatgac cacatcggtt acagagatga
     2041 tctcatcgtc tgttgagacg acttccttgt ttggaaagtt ggcatcgggt actttgcacc
     2101 tgaagaaact ttcagtaact ttgccaccca aaaataagga ttctaaaatg aaaagtgctt
     2161 ttccatataa attgctttcc gggcagcaga tcaacgataa aataaacaat ctgggtagcg
     2221 ttggtgcacc ttttctgttt gttatcgact ttaaagcaga gagcggttat gtgatggaag
     2281 aaatagagct ggataaacat tttgtacaga ttgaattcaa tcaacaggag tcaggaataa
     2341 aaagccggaa ggcgggtaga attgaatggg agacttgccc ggtatcgttg gatgacttta
     2401 agcccagatt cgattttgtg gtggagcaaa tccacaaagg aaattcattt ctgaccaatc
     2461 tcacgcaacc aaccgaagta aaaacaaatt tgtctttgtt ggaactgttt caatacggtt
     2521 cggcaaaata caaactatgg ttgaatggat tgtttactgt cctttcgccg gaaacttttg
     2581 tgaccattcg tgggaaccgg atttcgtcgt ttcccatgaa aggaaccatt gacgcttcta
     2641 ttccggatgc agaagtaata atactgaacg accctaaaga aaaagctgaa catgcaacca
     2701 ttgtagattt aatccgaaat gatcttagcc tggtggcgga acaagtggaa gtaaaacggt
     2761 accgttatat agacaaactc accaccaata ggcaggattt gttgcaggtt agctctgaag
     2821 tttcgggatt gttgcctgag aattatcggg aacggttggg agatatatta tttgcattat
     2881 tgcctgcagg ctccatttgt ggtgcaccca aaccaaagac gctggagatt attgaacaag
     2941 cagaaggtta caagcgcgga ttttataccg gtatttgtgg ttggtttgac ggtgaaaacc
     3001 ttgattcggc agtaatgata cggtttgttg aacaaaatgg cgataaactg atttttaaaa
     3061 gcggtggtgg aatcacctcg caaagtgaac tgaaaaaaga atacgaagaa ctaattcaga
     3121 aagtatatgt gccgattcgt tgaatcaatc aagttgaaag atggtgtttt ttatcgtctg
     3181 aagttgcacc aggaacgtgt aaataaagct tttgctgctt gttatcctac agaagaacca
     3241 attagcattt tcgaaaacct gaatcaatta attgttccgc aagaaggcat atataaatgc
     3301 cgtatggtgt acgatgaaga tgttcaatta ttggaactgg tgccttacga gcgtcgcgaa
     3361 atccgcacat tgaaattggt ggaaactaac ctggaaagcc ttgcttacaa gttggaagat
     3421 cgtacagggt ttaatgctgc ttttgcacaa cgtggctttt gcgatgatgt gttgctggtc
     3481 aaaaatggtt tgttgaccga tacatcctat tgtaatattg ctctttatga tgggcaaaac
     3541 tggtttacac ctctcactcc tttgctttac ggtgtgaacc gggctgaact attggcacag
     3601 gaaatactga ttgagaaaga cattactgtt gaagaactaa aaaactatca gaagatagct
     3661 atgtttaatg ccatgattga gtttggcgaa atggtgctgg atattgataa aatattttaa
     3721 acgggtttcg taattttgtt ttgatttagt cttgtgttaa ccggttattt gccgtttgaa
     3781 acaacgagaa atatttccca ttaagcgcca taagttcttt gtggttgccc gattcaacca
     3841 cttcgccttt atgaaagaaa taaattaaat cggcccattg cacagtagtg agccggtggc
     3901 taatgataac ggccgttttt ttgtgcgaca gtttttttaa actatcaata atttgtagct
     3961 cagcttcggc atccaaggca ctcgaaggtt catccatcag gattaaaggc g
//
LOCUS       DATDNM010000544         3734 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1137330, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000544 DATDNM010000000
VERSION     DATDNM010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1137330"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..640)
                     /locus_tag="VI413_09220"
     CDS             complement(<1..640)
                     /locus_tag="VI413_09220"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:0051991 -
                     UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-
                     glutamyl-meso-2,
                     6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol
                     4-beta-N-acetylglucosaminlytransferase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0030259 - lipid glycosylation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--N-acetylmuramyl-
                     (pentapeptide) pyrophosphoryl-undecaprenol
                     N-acetylglucosamine transferase"
                     /protein_id="HEY6914843.1"
                     /translation="MRNKFIISGGGTGGHIFPAISIANALKKHLPDAEILFVGALGRM
                     EMERVPAAGYPIEGLPVSGFDRKNMLRNVKVLINLFRSIMKARGIIRRFKPDAAIGVG
                     GYASAPTLRAASAFGVPTVLQEQNSYAGVTNKLLAKKAKRICVAYEGMERFFPKDKII
                     LTGNPVRQDLFSVGPKTDEAYQFFKLDPNKKTILVVGGSLGARTVNQSIIAGL"
     gene            complement(753..1976)
                     /locus_tag="VI413_09225"
     CDS             complement(753..1976)
                     /locus_tag="VI413_09225"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEY6914844.1"
                     /translation="MENLLKKYLKGDATLWIVFIGLCILSSIEMYSASSTLAYKASNH
                     AAPMLRHVGFLSLGALIAFGVHLIPYRYIRISSYLGLFLSFLLLIYVLFKGQSANDAA
                     RWIVIGGVQFQPSELAKLSVIIVAADLISRIKVVADERIYFLNTLILLAVICPLILLE
                     NFSTAFILFVVVYIMMFIGRVSLKRLGLLAGGLVLILVLGFGFVKTVPRESMPKIFDR
                     AYTWVGRIDRYKTEKKDEKAKYTITDENRQVQHGRIAIARGGVFGVMPGNSVERDFLP
                     QAYSDFIYAIILEEMGLIGGVVVIILYLILLFRAGKIATKCASVFPALLVIGLSLMIV
                     IQTFINMSVASSLIPVTGQPLPLISRGGTSILITCIYFGIILGITRQIKNDQPIEEEP
                     ELPEDTLPVVELESL"
     gene            complement(2112..3446)
                     /gene="murD"
                     /locus_tag="VI413_09230"
     CDS             complement(2112..3446)
                     /gene="murD"
                     /locus_tag="VI413_09230"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007756529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEY6914845.1"
                     /translation="MKRIVVLGGGESGAGAAVLAKKQGFDVFLSDLSEIKPEYKALLD
                     NAEVSWEEQQHTEELILNADEVIKSPGIPDKAPLIKKLHALGTPIISEIEFAGRYTNA
                     KMICITGSNGKTTTTMLVYHILQNAGLNVGLAGNVGHSLALQVAIDSFDYYVLELSSF
                     QLDGMTEFKADIAILLNITPDHLDRYEYNFQNYVDSKFRITQNQTADDAFIFLENDPV
                     IKAELAKRNIQSAMYPFAIERTEKTKAFIENDELIIQTLKSLFTMPTTELALQGMHNT
                     YNSMAAGLAASIVNVRKESIRQSLQDFQGVEHRLEYVATVKNVRFINDSKATNVNSCW
                     YALQSMKTPVVLILGGTDKGNDYTEIEELVLSKAKGLIFMGVDNSALHKFFDGKIKNI
                     VDVRSMEDAVSEAYEMAAEGDAVLLSPCCASFDLFKNYEDRGRQFKSCVRNL"
     gene            complement(3451..>3734)
                     /locus_tag="VI413_09235"
     CDS             complement(3451..>3734)
                     /locus_tag="VI413_09235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEY6914846.1"
                     /translation="LLIPILCGVFIVENLSVVLQVSYFKYTKKRFGEGRRMFKMAPLH
                     HHYQKPGNSGIVALFQRPIQPMPESKIVIRFWIVGIILAAITIITLKIR"
BASE COUNT         1202 a          843 c          627 g         1062 t
ORIGIN      
        1 tgagaccggc aattatactt tgattgactg tccgtgcacc caggcttcct cccacaacaa
       61 gtattgtttt cttattcgga tccaacttaa aaaactgata ggcttcatcg gttttgggtc
      121 cgactgaaaa caagtcctga cgaaccggat taccggtaag tataatttta tctttcggaa
      181 aaaatcgttc cattccctca taagccacac aaattcgttt agctttttta gcaagcagtt
      241 tattggtaac tcctgcatac gagttttgtt cctgaagcac ggtaggcact ccgaaagcag
      301 aagctgcacg caaagttggc gcactggcat aaccacccac accaatggct gcatcgggtt
      361 taaaacggcg aataatacca cgcgctttca taatgcttcg aaacaaatta attagcacct
      421 tcacattacg aagcatattt ttccggtcaa aaccacttac aggcaatcct tcaataggat
      481 accctgcagc aggcacacgt tccatttcca tacgtccaag tgctcccaca aaaagaattt
      541 ctgcatctgg aagatgtttt ttcagggcat tggcgatact tattgccggg aaaatatgtc
      601 caccggtacc accaccgctg ataatgaatt tatttctcat agctttaatt tattgaacgc
      661 aatttacgca aataaaatgc aactaaaaaa cttttaatta aaaacaaaga tttaatggaa
      721 tgaacgaatt ctcgatttga aacagaacta tcctacaagc tttccagctc cacaacagga
      781 agcgtatctt caggcaattc cggttcttct tcaataggct gatcgttctt aatctggcgg
      841 gttataccta aaataattcc aaagtaaatg caagtgatca aaattgaagt accaccacga
      901 cttatcaacg gcaaaggctg cccggtaaca ggaatcaggc ttgaagctac agacatattt
      961 ataaaagtct gtatcacaat cataagcgat aagcctatta ccagcaaggc agggaaaaca
     1021 ctagcacatt tcgtggctat tttacccgcc ctgaaaagca aaatcagata gaggattatc
     1081 acaacaaccc caccaatcaa tcccatttcc tccagaataa ttgcataaat gaaatccgaa
     1141 tatgcctgag gaagaaaatc gcgttcaaca ctattccccg gcattacgcc aaaaacacca
     1201 cctcgcgcga tggcaatccg gccatgctga acctgacggt tttcatctgt tatggtatat
     1261 ttggcttttt catctttttt ctcagttttg taacggtcga tacgtccaac ccaggtgtaa
     1321 gcacgatcaa atattttggg cattgattcc cgcggaactg tttttacaaa accaaagcca
     1381 agaacaagta ttaaaaccag accaccggcc agcaacccta atcgcttcaa tgaaactcgt
     1441 ccgataaaca tcataatgta aacaacaaca aacaaaataa atgcggtgga aaaattttcg
     1501 agtaatatca aagggcaaat aactgccagc agaataagcg tattcaggaa ataaatacgt
     1561 tcatctgcca caacttttat tcgggagatt aaatcggctg caacaataat aacagacaat
     1621 ttggcaagtt cggaaggctg aaactgtacg cctcctatta caatccaacg ggcagcatcg
     1681 tttgcactct gtcctttaaa aagcacgtaa ataagtagca aaaaagataa gaacaacccg
     1741 aggtatgaag aaatccgaat atatctgtaa ggaatcaaat gtactccaaa agcaatcaac
     1801 gccccaagag acaaaaatcc gacgtgacga agcattggtg cagcatgatt ggaagcttta
     1861 tatgccaacg tgctggatgc actgtacatt tctattgaag aaagaatgca cagcccaatg
     1921 aacacaatcc acaaagtggc atcacctttc aaatattttt ttaatagatt ttccatatat
     1981 gacccttaat ccgtcagctg acggagaata aagttagttc tatctcttat tttgcttata
     2041 aattcaactg ataattatag aacattgaga tttaaataac cacctattat caactactaa
     2101 ctattaacta atcaaaggtt tctcacacag cttttaaact gccgtcccct gtcttcatag
     2161 tttttaaaca aatcgaaact ggcacaacaa ggagaaagca gcactgcatc tccttcagca
     2221 gccatttcat aagcttcact cacagcatct tccatagatc ttacatccac aatatttttt
     2281 atttttccgt cgaagaattt gtgcaatgct gagttatcaa cacccataaa aatcaaccct
     2341 ttggcttttg agagtaccaa ttcttcgatt tccgtataat catttccttt atcagttcca
     2401 cctaaaatta aaacaaccgg cgttttcatg ctttgcagcg cataccagca cgagttcaca
     2461 ttggtggctt ttgaatcatt gataaaacgc acatttttca cggtcgctac atattccaga
     2521 cgatgttcaa caccttgaaa atcctgcaac gattgtctga tactctcttt acggacattc
     2581 acaatagagg ctgccaatcc tgccgccatc gaattatagg tattatgcat accttgcaaa
     2641 gcaagttctg ttgtaggcat agtaaacaga gatttgaggg tttggataat taattcatca
     2701 ttttcgataa atgctttagt tttttccgta cgttcaatgg caaacggata catggctgac
     2761 tgaatattgc gttttgccag ctctgctttg attaccggat cgttttccaa aaaaataaaa
     2821 gcatcatcag ccgtttgatt ctgagtaatc cggaattttg aatcgacgta gttctggaag
     2881 ttatattcgt aacgatccaa atgatctggt gtaatattca gcaaaatagc aatatccgct
     2941 ttaaattcag tcataccatc caattgaaaa ctactaagct ccaacacata atagtcgaaa
     3001 gaatcaattg ctacctgcaa agcgaggcta tgacccacat tgcctgccaa accaacattc
     3061 aaacctgcat tctgcaaaat atgataaacc aacatggtag tggttgtttt gccattgcta
     3121 ccggttatac aaatcatttt agcattagta taacgtccgg caaattcaat ttccgaaatt
     3181 atcggcgttc ccaacgcatg taacttctta attaacggag ctttatcagg aatccccgga
     3241 cttttaatta cttcatcagc gttcagaatc aattcttcag tgtgttgttg ttcttcccag
     3301 gaaacttctg cattgtccag taatgccttg tactccggtt ttatttccga caaatcggaa
     3361 agaaaaacat cgaagccctg tttttttgcc aaaacagctg cgcctgcacc gctttcaccg
     3421 ccacctaaaa cgactattct tttcatttta ttatctgatt ttcaatgtaa taatagtaat
     3481 tgcagctaaa ataattccga ctatccagaa acgaattaca atttttgatt ccggcattgg
     3541 ttgtatcgga cgttgaaata acgctacaat acccgaattg ccgggttttt gatagtgatg
     3601 atgaagcgga gccattttaa acatgcgccg gccttcacca aaacgttttt tcgtatattt
     3661 gaagtagcta acctgcaaca caaccgataa attttctaca ataaatactc cacataaaat
     3721 tggaatcaat agtt
//
LOCUS       DATDNM010000545         2124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1564634, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000545 DATDNM010000000
VERSION     DATDNM010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1564634"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(180..1631)
                     /gene="rpoN"
                     /locus_tag="VI413_09240"
     CDS             complement(180..1631)
                     /gene="rpoN"
                     /locus_tag="VI413_09240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005860047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEY6914847.1"
                     /translation="MLKQQLQQKLQQKLSPAQIQVIKMLEVPTLELEERIRQELEENP
                     ALEEGAEADKESEEMDDLSIDDGGNNDDFDPEEYVADDDIPDYKLKANNTSKDDKYED
                     IPFSVGMTFHEFLVDQVGLLQLSEKERLLTEYVIGNIDDEGYLRRTPEAMVDDIVFQA
                     GVQTTDEEMYRIIALVRQLDPAGVGACNLQECLMLQLERKETCESVKLAIRLIKDYFE
                     EFSKKHYDKIQRGLEMDDAMLKKVMTEIIHLNPKPGNAWGGNILEKSMATIVPDFILE
                     NDENQLTVSLNNSNIPELRVNSTYNEMFQDYAGNKQNQSREMKDAVMFVKQKIDSARW
                     FIDAIKQRQQTLLTTMMAIVDFQREFFIEGDDTYLKPMILKDIADRTGYDISTISRVS
                     NSKYIQTEFGIFPVKYFFSESMTNDSGEEVSTREIKKILQDCIDNEDKRKPWNDDALA
                     EVLKTKGYIIARRTVAKYREQLNIPVARMRKEI"
BASE COUNT          534 a          444 c          444 g          702 t
ORIGIN      
        1 gcctacgtat tctgggcgct gtttatgtgg cgcaccatgc aattccccat gttcattagc
       61 agtattatgc cgtaggttgg cattaataac ggctgaaaaa ccagggaaat tatttcatag
      121 aattttttca tcaattcagt ctctttttat ttactactaa ctataaacta acgacggttc
      181 taaatctctt ttcgcatgcg tgctaccgga atgttcaatt gttcgcggta ttttgccaca
      241 gtacggcggg caatgatata gccttttgtt ttaagcactt cggccagtgc gtcatcgttc
      301 cagggtttac gtttgtcttc gttgtcgatg caatcctgca ggattttttt gatttcgcgt
      361 gtcgacactt cttcgcccga atcattggtc atcgattccg agaaaaagta ttttaccgga
      421 aaaatgccga attcggtttg gatatatttg ctgttgctca cccgcgaaat cgtcgaaatg
      481 tcatatccgg tgcggtcggc aatgtctttc agaatcattg gtttcaggta cgtgtcgtcg
      541 ccttcgataa agaattcccg ctgaaaatcc acaatggcca tcatggtggt aagcaaagtt
      601 tgctgccgct gtttaatggc gtcgataaac caacgcgcgg aatcaatctt ttgtttaacg
      661 aacatcaccg catctttcat ttcgcggctt tggttttgtt tgtttccggc ataatcctga
      721 aacatttcgt tatacgtgga gttcacgcgc agttcaggga tgttgctgtt gttgagcgaa
      781 acagtgagtt ggttttcatc gttttccaga ataaaatcag ggacaatggt agccatcgat
      841 ttttccagaa tgttgccacc ccaggcattt ccgggtttgg gattgaggtg gatgatttcg
      901 gtcatcacct ttttcagcat ggcatcatcc atttccaacc cccgttgaat tttatcgtaa
      961 tgtttcttcg aaaattcttc gaagtaatct ttaataagcc gtatagccaa ctttacagat
     1021 tcgcaggtct ctttgcgttc taactgaagc atcaggcatt cctgaaggtt gcaagcacca
     1081 acgcctgcag gatccagttg gcgcacaagt gcaatgatcc ggtacatttc ttcgtcggta
     1141 gtttgcacgc ctgcctgaaa aacaatatcg tccaccatgg cttcgggcgt gcggcgcagg
     1201 taaccttcgt cgtcgatatt accaatcacg tattctgtga gaaggcgttc tttttccgaa
     1261 agttgcagca agccaacctg atcaactaag aattcatgaa aagtcatgcc tacagaaaac
     1321 ggaatgtctt cgtatttatc gtctttggaa gtattattgg cttttagttt gtaatcgggg
     1381 atgtcatcat cggccacata ttcttcggga tcaaaatcgt cgttattgcc accatcatcg
     1441 atgctcaggt catccatttc ttctgattcc ttgtcggctt cggctccttc ttccaatgca
     1501 ggattttctt ccagttcctg acggatacgc tcttccagct caagggttgg cacctcaagc
     1561 atttttataa cctgaatttg tgcaggtgat aatttttgtt gtaacttttg ttgtaactgc
     1621 tgttttagca taaaagagga ataggcaatt gatcaaacaa tagactgcaa agataagctt
     1681 ttttcggaac aatgtacagg aaagaatcgg tgcattacaa ttttcgggcc aaagggtttt
     1741 gggggggtac gggtttcgcg gtttgtaacc gcgaaacccg tttccgagtc tcgtagaacc
     1801 cgcgaactcc gggttcttca acatcaatat ttttatttta agttctttta tttttgttat
     1861 cttaaaacct accttccacg caaaagttat tttgaaagga ttctgctcac tacaaaattt
     1921 ctttaattgt ctgttgacta aggagtttgt taaagtgata gcaaataagc aattgcgata
     1981 tttcagggat aaatccctac tttctcttat tgattcattt tgaatactaa ataacctaaa
     2041 ttgcatgtaa taagtggttt aggtctgatt ttgattaagt caataatttg taataattac
     2101 aagaaataga aacttctcag tgct
//
LOCUS       DATDNM010000546         2784 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_284620, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000546 DATDNM010000000
VERSION     DATDNM010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284620"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..556)
                     /locus_tag="VI413_09245"
     CDS             complement(<1..556)
                     /locus_tag="VI413_09245"
                     /inference="COORDINATES: protein motif:HMM:NF017709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease inhibitor I9 family protein"
                     /protein_id="HEY6914848.1"
                     /translation="MTKLRLLLSALTSGMLFSGILFSSCNSPDLQSVAISKDGVPTLV
                     ASSVTNNKYIVVINEDIDQKAINFQTRKDNVISKAQGLLKKHQISGDLEEVYQSALKG
                     FTVRLNPAQVKLLVNDNSIKSIEPDAVISLSPINATGKPAPPAPTQTTPWGITRVGGG
                     TITPTGTAWIIDTGIDLDHPDLNVD"
     gene            complement(879..1424)
                     /gene="rsmD"
                     /locus_tag="VI413_09250"
                     /pseudo
     CDS             complement(879..1424)
                     /gene="rsmD"
                     /locus_tag="VI413_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444993.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
     gene            complement(1446..2144)
                     /locus_tag="VI413_09255"
     CDS             complement(1446..2144)
                     /locus_tag="VI413_09255"
                     /inference="COORDINATES: protein motif:HMM:NF024271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3822 family protein"
                     /protein_id="HEY6914849.1"
                     /translation="MEKTAENSYTLSIRINSDGFSLLINDESGLLLSTQNISTSLFNL
                     SAEEIVRIISIETPYYYEKVNIICESDSYIFIPTLFFKREEAMDFLYFQHKKQKNERV
                     IYNYVSDWDTVNVFSIPATLEQALARLFPESIIEHQLSWLLKNKIKPLQTNSLSIWVR
                     SKMMDVVALKNGKLQLLNSFSYQTPEDFTYHALDIIEQLSLDIEKCDVFLYNSDKKTE
                     LGKILEKYAKVISL"
     gene            2382..>2784
                     /locus_tag="VI413_09260"
     CDS             2382..>2784
                     /locus_tag="VI413_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY6914850.1"
                     /translation="MNLSFRTSYSRIVHAHSNLFSYEERKELRAILSKYVDLYPPEGA
                     APGRSVSDKIQIVEIVLDEIGLGKAAVLSVLFHELVQMKQLSISEIETKFNTQVSSII
                     NGMMRVEELYARNASLETENFRKLFLTFAEDV"
BASE COUNT          818 a          442 c          544 g          980 t
ORIGIN      
        1 ggtctacatt taaatccgga tgatctaaat caataccggt atcaatgatc caggcagttc
       61 cggttggagt tatggttccg cctccaacac gcgtgatgcc ccaaggcgta gtttgagtgg
      121 gagcaggagg tgccggtttt ccagttgcat taataggtga taaagatatt acagcatctg
      181 gctcaattga cttaatagaa ttgtcgttga ctaatagttt gacctgtgcc ggattaagcc
      241 ttactgtaaa tccttttagt gcagattggt aaacttcttc gaggtcacca gagatttgat
      301 gtttttttaa tagaccctga gcttttgaga taacattgtc tttacgagtt tgaaaattga
      361 tcgctttttg gtcgatgtct tcgttaatta caacaatgta tttgttgttg gtgaccgaac
      421 ttgcaaccaa tgtgggaact ccatcttttg atatggcaac tgattgtaaa tcgggagagt
      481 tgcagcttga gaataatatt ccggaaaata gcattccgga tgttaaagcc gataagagta
      541 gtctgagttt agtcatggtt tcggtttttt aaaattaatg tataatttga ttagatccaa
      601 taatttgaat gtacgaagac aattcaaatt gagattttac gtagtttagg tgatttgaga
      661 agtgtactct tttgtactta ttatataaca atgcatgaat cagtatagtt tctttattat
      721 ataaacattt gataataaaa aaccggcaga atatcaattt cgatattcag ccggttttag
      781 ttgtgggctg tcaggagaaa gtatactatt gtactattat tctttattgt tttaaatggg
      841 aaattggctg tgaatgagat ggataaggcc tgaagctctc attcttttac ttcgaagaaa
      901 ctgaagttta catttccgta attacggtgg tctgaaaaat taggatgatt aataaatgag
      961 tgttttgctg aatgttccag tacgaaaagt ccgtctgctt tgagtaattt atgtgagaaa
     1021 attaagtcgg gaatttcggc gagtttgtcc aactcatagg gtggatcggc aaaaatcata
     1081 tcaaattgag aatgacagct tccgataaat ttgaaaacat ccattttcat taatgagagg
     1141 ttttgtattt ttagctcggt gcatactttg cgaataaaat tgcagtgacg ctcgttttgc
     1201 tcaatggtga taacactttt gcagtcgcgc gatacaaatt caatactaat acttccggtg
     1261 ccagcaaaca aatcaagtac ctcaatatct tcgaaatcga ttctgttgtt taatagatta
     1321 aacaatcctt cttttgcaaa gtcggttgta ggacgtgctg tgatattggt aggagctgat
     1381 attcgcctcc ctttatattt tccacttatt attctcatcg tttttctttt tctattatct
     1441 acccgttata aactgataac tttcgcgtat ttctccagta ttttcccaag ctcggttttt
     1501 ttgtcagagt tgtacaaaaa tacgtcacat ttctcaatat caagcgaaag ttgttcaatt
     1561 atatccaatg cgtgataagt aaaatcttcg ggagtttggt agctgaaact gttcaataac
     1621 tgtagttttc cattttttaa agcaactaca tccatcattt tggatcttac ccagatagag
     1681 agtgaatttg tttgcagcgg tttaatttta tttttcaaca accagctaag ttgatgttca
     1741 ataatcgatt ccggaaataa gcgcgcaagg gcctgttcca atgttgctgg tatcgaaaat
     1801 acgtttaccg tgtcccagtc ggaaacataa ttatatatga cccgctcgtt tttttgtttt
     1861 ttgtgttgga agtacagaaa atccattgcc tcttcacgtt taaaaaaaag tgtcggaata
     1921 aatatataac tgtccgattc acagattata tttacttttt cataataata tggtgtttcg
     1981 atacttatta tcctgactat ttcttcagcg gataaattaa ataaagatgt tgagatgttt
     2041 tgagttgaaa gcaataagcc tgattcgtca ttgattaata aagagaatcc atctgaattg
     2101 attcggatgg ataaggtgta tgaattttca gcagtttttt ccatattcgt tataggtttg
     2161 caaatttaaa aaagaaaatt caatactcct ctatgtgtga gtgtttttat ctgatttttt
     2221 caatgtggtt ttaatgccag agattttcat gactttttct gtttctatta ggatgttctt
     2281 taaatttgta tcgtatcttt gcaactgaaa ctgaaagtgg tgagtaataa gcaatggttg
     2341 ttgatagcat tcaccaacaa actgataact gaaaattgaa aatgaattta tcgtttcgta
     2401 catcatatag ccggattgtt catgctcatt ctaatctttt ttcatatgaa gaacgaaaag
     2461 aactgagagc gattttgagc aaatacgttg acctttatcc acccgaaggt gctgctccgg
     2521 gccgttctgt ttcggataaa attcaaatag ttgagattgt tctggatgaa atcggacttg
     2581 gaaaagcagc tgttctaagt gtgctttttc atgaattagt tcagatgaaa cagcttagta
     2641 tatccgaaat tgaaactaag tttaacacgc aggtttcatc tattattaat ggaatgatgc
     2701 gtgtggaaga actttatgca cgcaatgctt cgctcgaaac agaaaacttc cgaaaactat
     2761 tcctgacctt tgctgaagat gttc
//
LOCUS       DATDNM010000547         3539 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_924982, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000547 DATDNM010000000
VERSION     DATDNM010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3539
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_924982"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1246
                     /locus_tag="VI413_09265"
     CDS             <1..1246
                     /locus_tag="VI413_09265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEY6914851.1"
                     /translation="TGMDKNAVFFATAISAGFVTIAMGLVANFPIALAPGMGLNALFA
                     TVALAGVGMPWQVALGAVFISGLIFILLTVTKVRQILVIAVPNTLKRSITVGIGLFIT
                     IIGLKLSEIMVVSANVIPPTLEAMGKSTGATTLKFFEWNIGMGSFHNSSMLLCLIGLF
                     LTAVLMARNVKGSLLIGIVATTLIGIPMGVTVIPDGFAPFSLPDFKHLAVGALDIKGA
                     LNMGIWTVVFTFTFVELFDTFGTLVGTAGKAGLIDKDGNSPKIGKAMLVDAFGVSFGA
                     LMGTSTITAYVESAAGIGEGGRTGLTAVTTGLFFLLALVIAPLAGIIPSAATAPALII
                     VGVLMASSVLDIDFNDFTEGFPAFMTFIMMPFTYSIANGIAAGIISYTILKVATGKWK
                     QVHWMMYILFVLVITRYIFLSE"
     gene            1593..3407
                     /locus_tag="VI413_09270"
     CDS             1593..3407
                     /locus_tag="VI413_09270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914852.1"
                     /translation="MKRLLLILSFVLALSDFAVDAQNLVANPSFETWTSGTQPITNWV
                     ITTPANGTVAQDTAHNDGAKSCKMFASGTYHEIYQYATVTPGKTYTLSVSYYIYGGVA
                     TNAGIWCNFKTAANGSNIALSLTDSLLLKGPGGATKFFASVLNSWQTYTCNVVAPAGS
                     TVFRFGIRTYKASTVSWDKCSFTENLTPVINKSVSTLSGFSYAPGAGPSVQQSFTISG
                     SNLTSSMTVTAPANYELSTNSGAAFTALANPFTITPSGGVVSPVTLYARLKAGLTANT
                     YTGNINLTSGSLAQAIALSGTVAAPPVTLTTSTTSLSGFTYVEGSGPSTQQSFTLSGS
                     NLTSGIVVTPPTSNYEISISSGTAFSPLTTPFTISRSGGSVAPVTIYVRLKSGVVAGN
                     YTGSITLSTTGATKTIALSGTITVPAGISLSPTSLTGFSYGVGGGPSTIKSFNISGIG
                     LTSSVVITPPADFEISDTASPFTATGLILLVPSNGNVASTPIYVRLKSGLPVSTYNES
                     ISLSSTGFTTKTVSLSGNVLLTTGAPETSANNLSVYTSGGNIFIRGTAKDEIVSLYSI
                     TGMRLQTIKSQGEQIEITAQPGAVYLVKTTTKIFKVIL"
BASE COUNT         1020 a          723 c          697 g         1099 t
ORIGIN      
        1 tacaggaatg gacaaaaacg ccgtgttttt cgccaccgcc atttcggcag gatttgtgac
       61 catagccatg ggacttgtag ccaacttccc gattgcattg gctcccggca tgggacttaa
      121 tgcgcttttt gctaccgttg cgttggcagg cgttggaatg ccctggcagg ttgcacttgg
      181 tgcagtattt atttccggac ttattttcat tttgctgaca gtaaccaaag ttcgtcagat
      241 tctcgttata gctgttccca acacgttgaa acgttccatt acagttggta tcgggctatt
      301 tataactatc attggcctga aactttctga aattatggtt gtttcggcta atgttattcc
      361 tccaactttg gaagccatgg gcaaaagcac aggtgctacc acgctgaaat tttttgaatg
      421 gaacattggc atgggaagtt ttcataacag ttcaatgttg ctttgcttaa tcggtctttt
      481 ccttaccgcc gttttaatgg cccgcaacgt taaaggatct ttgttgattg gtatcgttgc
      541 aaccacatta atcggaatac caatgggagt tacagttatt cctgatggct ttgcaccatt
      601 cagcctaccc gacttcaaac atctggcagt aggtgcactt gatattaaag gtgcattgaa
      661 tatgggtatc tggacagtag ttttcacgtt tacttttgtt gaattatttg acacctttgg
      721 tacgttggta ggaacagctg gcaaagcagg actgattgac aaagatggaa actcgccaaa
      781 aattggtaaa gccatgttag ttgatgcatt tggtgtttcg tttggtgcgt taatgggaac
      841 aagtactatt accgcttatg tggaaagtgc tgccggtatt ggcgaaggtg gccgcaccgg
      901 attaaccgca gttacgaccg gattattctt cctgttggca ttggttattg ctcctttggc
      961 aggtattatt ccaagtgcag cgacagctcc tgcattaatt attgtaggcg tattaatggc
     1021 ttcatcggta ttagatatcg acttcaatga ttttaccgaa ggtttccctg catttatgac
     1081 ttttataatg atgccgttta cctacagtat tgccaatgga attgccgccg gtattatttc
     1141 atacactatt cttaaagttg caactggaaa atggaaacag gtacactgga tgatgtatat
     1201 cttatttgtg ctggttatta cccgctatat tttcctcagt gaataagtaa gaatttatat
     1261 ttttaagatc aaattaaatg cccgttgtgt acaactacac agcgggcatt ttagtaccat
     1321 tttatatgtc gcaattatta caacacatta cattttactg aaaaataacg caaatcgttg
     1381 aaatatttga tataaaaccc tattattatt gatattttaa tacaacaatt gaaataaata
     1441 attaattttg tcaaattgat gctaaccaca tccaatataa ttaaatcgtt aaattgtatt
     1501 tgttattaaa aattatcact ttatagttga atcttttacg caaacctgaa tttgtagaaa
     1561 ctataagata ctaacttttt aaaccactcg ttatgaaaag actattactc atcttaagct
     1621 ttgtacttgc attatctgat tttgcagttg atgcgcaaaa tttagttgcc aatcccagtt
     1681 ttgaaacctg gacttccggg acacagccta tcacaaactg ggtaattact acaccagcta
     1741 atggaaccgt tgcccaagac actgcccaca atgatggggc aaaatcttgt aaaatgtttg
     1801 catcgggaac ttaccatgaa atttaccagt atgcaactgt aacgcccgga aaaacttata
     1861 cgctaagcgt ttcatattat atttacgggg gtgttgcaac caatgccgga atttggtgta
     1921 atttcaagac tgccgcaaat ggttcaaata tagcactatc tttaactgat tcattattgc
     1981 ttaaaggtcc ggggggcgct acaaagtttt ttgcgagtgt cttaaattca tggcaaacct
     2041 atacttgtaa cgttgtagct cctgccggaa gtacagtttt ccggtttgga atacgaactt
     2101 acaaagccag cactgtatcg tgggataaat gttcattcac agaaaacctt actccggtca
     2161 tcaacaagtc tgtttcaact ctatcagggt tcagctatgc acccggagca ggtccatcag
     2221 ttcaacagtc gtttacaata agcggaagca acctcaccag cagtatgact gtaacagctc
     2281 ctgcaaatta tgagctatca acaaactcag gtgcagcctt tactgcattg gctaatccat
     2341 ttacaattac cccgtcagga ggagtggtta gcccggttac attatatgcc agattaaaag
     2401 ctggactgac tgcaaatacc tataccggaa acatcaactt aacttcggga agtcttgcgc
     2461 aagctatagc attgtctgga acagtggctg cacctccggt gacacttaca acatctacaa
     2521 cttctttatc aggatttacg tacgtagaag gaagcggtcc atctacccaa caatcgttta
     2581 cgcttagtgg cagcaatttg accagcggaa tagttgtgac gcctccaact tcgaattatg
     2641 aaatttcaat aagctcaggc accgccttta gcccattaac tactccattt acaattagtc
     2701 gatccggagg atctgtggct ccagtgacaa tttatgttcg tttaaaatcc ggagtagttg
     2761 caggaaacta taccggcagc ataacattat cgacaacagg agcaaccaaa actattgcgt
     2821 tatccggaac aataacagtt cctgcgggta tttcattatc gccaacttca ttaacaggat
     2881 tcagttatgg tgttggcgga ggtccatcaa cgattaaatc atttaatata agtggaatag
     2941 gcctgacttc ttcagttgta ataacgcctc ctgcagattt tgaaatatca gataccgcaa
     3001 gccctttcac ggcaactggc ttgatcctgc ttgtaccatc aaatggcaat gttgcttcaa
     3061 cgccaattta tgtccgttta aagtccggat tgcctgtgag cacttacaat gagagcataa
     3121 gtttgtcttc aaccggattt acgaccaaaa cagtatcttt aagtggaaat gttttgctta
     3181 ccacaggagc acctgaaact tctgctaaca atttaagcgt ttacacatcg gggggtaata
     3241 ttttcatcag gggaactgct aaagatgaaa tagtttcgct ctattcaatt accggaatgc
     3301 gtttgcaaac tattaaatcg caaggagaac aaattgaaat aaccgctcaa ccaggtgcag
     3361 tttatctggt taaaactaca acaaagattt ttaaagtaat cttataaaaa gaagcttctt
     3421 acaaataaaa aaatccgctg cgaactttcg cagcggattt ttttattcca gatagcaccg
     3481 atttatttga tgagttttcc tgtaaagcta ttgtccgttc cttgtactct tactatgaa
//
LOCUS       DATDNM010000548         2182 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_70026, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000548 DATDNM010000000
VERSION     DATDNM010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70026"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VI413_09275"
     CDS             <1..253
                     /locus_tag="VI413_09275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEY6914853.1"
                     /translation="VKPGSNRGSVVVSCDVVANASFYVIEYTEGPVTADSIWIQKTTT
                     KHKLLIEGLTSGKQYTFRVAGAGSDPSRVWSDDVSSFVL"
     gene            485..1042
                     /locus_tag="VI413_09280"
     CDS             485..1042
                     /locus_tag="VI413_09280"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY6914854.1"
                     /translation="MEIEEIGLKIKDLKSQAEMLKKEIEKVNSETKRMMQDLQATTLK
                     LKQMPRVQGQPAQVSRTQNKEWLTRLNLTLQSDMLAILSAESYQIGLFTLRKETRMLT
                     FGNNSYHLTQKEFLLLAIFAANQNVFLSREFCLVNIWGEDTYYNSRSMDVYICKLRKL
                     LAEDSGIHIVNKHGQGYIMLVDNKN"
     gene            complement(1098..1229)
                     /locus_tag="VI413_09285"
     CDS             complement(1098..1229)
                     /locus_tag="VI413_09285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914855.1"
                     /translation="MKLNNRPDLSITDGWCKTVIRMQPVISFFPPGFATPEKCIAQV"
     gene            1451..>2182
                     /locus_tag="VI413_09290"
     CDS             1451..>2182
                     /locus_tag="VI413_09290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914856.1"
                     /translation="MRHYFTLVLLSLFSSFVFPATPADSLVRFSDLSFQSEFEKQVFK
                     SNQPVDEFNLCLASDKNMTPEKAATLKSSFNEIVKKLEKEKLTNKNFRQKFANAHKII
                     FYKSPMQYYDNAEFSDVLSNGYFSYVTSSVLYSLVLKELKIPFYYLFTLNKTNVIINP
                     DADQIILESLNRKDENGYFNSSDNNSYIVNLLDKNIRIGSEYQYNSSGGYSVVRFKES
                     DVLKSNQLGATIYFYKAIQQLNARQN"
BASE COUNT          705 a          398 c          460 g          619 t
ORIGIN      
        1 ggtgaaaccg ggtagcaacc gcggcagcgt ggtggtaagt tgcgacgtgg tagccaacgc
       61 ttcattctac gtgatagaat ataccgaagg acccgtaacg gccgatagca tctggataca
      121 aaaaaccacc accaaacaca aactgctgat agaaggcctc acaagcggaa agcaatatac
      181 tttccgtgtg gcgggagcgg gctccgaccc ttcgcgtgta tggagcgacg acgtaagcag
      241 tttcgtactt taattccttt ttcagagatt ctcaaactca accgcaaata aacgttttac
      301 actcaaccgt ccgtgattga aatatccgga cggttgtttt gtatttgcaa aagggttcgt
      361 ccgtaatgga tttaccgggt tactaaaaat tagatgggca aaaagtaggt tttgttaagg
      421 atatttcgta tgtttgcggg gtttttaaat ttttgaaaaa aacaaatgat taacacacga
      481 aaatatggaa attgaagaaa ttggcttaaa aattaaagat ttgaaatctc aggcagaaat
      541 gctgaaaaaa gaaattgaga aagtaaatag tgaaacaaag agaatgatgc aggatttaca
      601 agctacaacc cttaaattaa aacaaatgcc gcgggtgcaa gggcagccgg cacaagtaag
      661 cagaacacaa aataaggaat ggttgacaag actaaatctt actttgcaga gtgatatgtt
      721 ggcgatttta tcagcagaat cttatcaaat aggactattc accttgcgca aagaaacaag
      781 aatgcttact ttcggaaata attcatatca tttgactcaa aaagaatttc tcttacttgc
      841 tatatttgcg gctaatcaaa atgttttcct cagtcgtgag ttttgtctgg ttaatatatg
      901 gggagaagac acgtactaca actcgcgcag tatggatgta tatatttgta aattgcgaaa
      961 attactggct gaagatagtg gcatccatat tgtaaacaag cacggacaag gatatataat
     1021 gttagttgat aataagaatt agccggttac gggtccgggg ttaaccccct tcagcagttg
     1081 gccgttggtt tgtgtcgcta aacctgagcg atacactttt cgggagttgc aaagcccgga
     1141 ggaaaaaatg aaataacagg ctgcatacga ataaccgttt tacaccaacc gtccgtgatt
     1201 gaaagatccg ggcggttgtt tagtttcatg ctgaatggcc ggcaggtaaa attgttggca
     1261 attcacttaa aaataattgg aaaaaaagta ggttatgtta agtttgtttc gtatgtttgc
     1321 agagttttta atattctaaa acatttgtat acataaacca ttgccatgta tggtggttca
     1381 ggtcgcttac agaatataga ttttaagcct tagttacaaa aacagaatac attcaattat
     1441 ttacttacgt atgagacatt atttcacttt agttctgctt tcattgttca gttcattcgt
     1501 tttccccgct acgccggccg attcattggt tcgtttctcc gatcttagtt ttcagtcgga
     1561 attcgagaaa caggtattta aaagtaacca gccggtagat gaattcaacc tgtgcctggc
     1621 ttctgataaa aacatgacac ctgaaaaagc tgctaccctc aaaagcagtt tcaacgaaat
     1681 agtcaaaaag ttggaaaagg aaaagctcac caacaagaac ttcaggcaga agtttgctaa
     1741 tgcccataaa atcattttct ataagtcgcc tatgcagtat tacgataatg cagagttctc
     1801 ggacgtgctg agcaatggct attttagtta tgtaacatct tcggttctat attcgttggt
     1861 attaaaagag ctgaaaattc ctttttacta cctttttacg ctgaataaaa ccaatgtgat
     1921 aattaatccg gatgccgacc agattattct tgaatccctt aaccggaagg atgaaaacgg
     1981 atacttcaac agttcggaca ataacagtta cattgtaaac ctgctggata agaacattcg
     2041 catagggtcg gaatatcagt ataattcctc gggaggttat tcggttgtcc gcttcaaaga
     2101 gtcggatgtg ttgaaaagca atcagctcgg ggctaccatt tatttttaca aagccataca
     2161 acaacttaat gccaggcaaa ac
//
LOCUS       DATDNM010000549         2013 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1031702, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000549 DATDNM010000000
VERSION     DATDNM010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1031702"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            235..657
                     /locus_tag="VI413_09295"
     CDS             235..657
                     /locus_tag="VI413_09295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914857.1"
                     /translation="MKDKLIKKIQNAGCLILLISLCITSDFFAAETQKQNELAKNKTI
                     ASHPARASPVDSCQYSVQIDGQSNIVIINDKIMVSTPDTAAKQNNIRVTGKGNTIRII
                     QDDNKSNQITVIQNDTNSKVIIFQSGNNNQTKISQNKN"
     gene            681..1562
                     /locus_tag="VI413_09300"
     CDS             681..1562
                     /locus_tag="VI413_09300"
                     /inference="COORDINATES: protein motif:HMM:NF018688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914858.1"
                     /translation="MKKLSFLLAMVFAASFAMAQHVSTVLETGDGNSAIITQGFDGGG
                     LAMPGNISYVDQIGDDNDAVVDQTNNGFGGQNHDSKILQTGNKNAADVEQRNATGNAL
                     IKQDGDRNIANVLEVGNFDLAHPAAGLAPYDAYVLQDGDDNTVNMSIYGDRSASAAIQ
                     KGDDNKITQELGQAVGEKVYQSSAYANQEGDRNEAMQVMEGQGFAGNIDVLFERERIW
                     QKGDDNYASQLQKDDGLVTIYTTNYAEVRQTGDNNDSWQTQTGSNNDSRVTQNGDGNS
                     SISTQLGNENLVRVQQN"
     gene            1665..>2013
                     /locus_tag="VI413_09305"
     CDS             1665..>2013
                     /locus_tag="VI413_09305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914859.1"
                     /translation="MKTSILYLTVLMLSSFIGYSQEVINNTGTENNEAIQQISNPYID
                     NILIFQNLNRGNSNYTFAQQTGNYNTVNVSQQNDAGSTAANQSYNVQQGNSNEMTIGQ
                     IGSGNLLLSFQLGY"
BASE COUNT          730 a          361 c          371 g          551 t
ORIGIN      
        1 aaatacattt tttatacaaa agacacactc tttgtaattt attcatttca aacttgtaat
       61 aattccacaa aatacataaa tatacttaaa aaccttatat tataccgaat tgtttttaga
      121 gcactgttac aaattttgaa gactacatct atataataat taacacattt gccattgttc
      181 caaatgtcag atttaatgat ttcaattttt ttattactct taataaaaaa aaacatgaaa
      241 gataagttaa ttaaaaagat tcaaaatgct ggttgcttga ttcttcttat cagtttgtgc
      301 ataacatctg atttttttgc ggccgaaacg caaaaacaga acgaactggc aaaaaataaa
      361 acaatagcat ctcatcctgc cagggcgtcg cctgtcgatt cgtgtcaata ttcagttcaa
      421 attgacggtc aatcgaatat agtcatcatt aatgataaaa taatggtgtc gaccccggat
      481 acagctgcaa aacaaaataa cattcgtgtc actggcaagg ggaatactat taggattatc
      541 caggatgaca acaaatcgaa ccagataact gtaattcaaa acgacacaaa ttcaaaagtt
      601 attattttcc aaagcgggaa taataaccaa acaaaaattt ctcaaaacaa aaactaaaaa
      661 acacattaat actacaaatt atgaaaaagt taagttttct tttagcaatg gtgtttgcag
      721 caagctttgc aatggcacaa cacgtatcaa ctgtattgga aacaggtgat ggcaattccg
      781 ctattattac acaaggtttc gatggaggtg gccttgctat gccaggtaac atttcttatg
      841 ttgaccagat tggtgatgac aatgatgcag ttgttgatca gactaacaat ggttttggag
      901 gtcagaacca cgattctaag attcttcaaa cagggaataa aaatgcagct gatgttgaac
      961 aacgcaatgc aaccggaaat gctctcatca aacaagatgg agatagaaat attgcgaatg
     1021 tgcttgaagt tggaaatttt gacttagctc atccagcagc cggacttgct ccttatgatg
     1081 cttatgtttt acaagatgga gatgacaata ctgtaaacat gtccatttat ggcgatcgct
     1141 cagcctctgc agcaattcag aaaggtgatg ataacaaaat aacccaagaa cttggacaag
     1201 cagtagggga aaaagtttat caatccagtg cttatgctaa ccaagaaggt gatagaaacg
     1261 aagccatgca agtaatggaa ggccaaggtt ttgccggaaa catcgatgta ttatttgaga
     1321 gggaaaggat ttggcaaaag ggcgacgaca actatgcaag tcagttacaa aaagacgatg
     1381 gtttagttac aatttacaca actaactatg ctgaagtaag acaaacaggt gataacaacg
     1441 actcttggca aactcagact ggatctaata atgattcaag ggtaacacag aacggtgatg
     1501 gaaactcatc aatttctaca caacttggta atgaaaattt agtaagagtt caacaaaact
     1561 aattcctgcc accatctaaa tagttgtttt gggcttgtcc cgggtttctt aatgtgatgg
     1621 ttaactcccc ggctcgcagt gagccggggt aatatagaaa aatcatgaaa acatctattc
     1681 tatatttaac agtcctaatg ctgagttcct ttatcggtta ttcgcaagag gtaatcaaca
     1741 ataccggaac ggaaaataat gaagctattc aacagatcag caatccgtac atcgacaata
     1801 tcctgatttt tcaaaacctg aataggggaa acagcaatta cacattcgcc cagcaaacag
     1861 gtaattacaa cacagtaaat gtaagccagc agaatgatgc aggctcaacc gcagccaatc
     1921 aatcatacaa cgttcaacag ggaaactcaa acgaaatgac gattggacaa attggtagcg
     1981 gaaatttgct gcttagtttt cagttgggtt ata
//
LOCUS       DATDNM010000550         3016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1459926, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000550 DATDNM010000000
VERSION     DATDNM010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3016
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1459926"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1961
                     /gene="porU"
                     /locus_tag="VI413_09310"
     CDS             <1..1961
                     /gene="porU"
                     /locus_tag="VI413_09310"
                     /inference="COORDINATES: protein motif:HMM:NF033707.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type IX secretion system sortase PorU"
                     /protein_id="HEY6914860.1"
                     /translation="FGKGSFDNRKILPNSGDNFVLTYEAENSLTTTLSYVTDDYFALL
                     DDNEGTQVPSNLMDIGVGRFTVSTQQQATDVVNKTIDYMNNQCKGNWKNQVCFVADDG
                     DGALHMKQADSIAVSIARNFPAYQVNKIYLDAFIQEITASGESYPLAKSRLLNLIRSG
                     LFVLNYTGHASPNGWSNESILTAADVKSFSNKNLPLWVAATCDFVQFDVQTQSAGEQV
                     VFNPAGGGIGILAAARPVYASQNFTLDKLFCENLFKIKNGEHMRVGDVIAYTKNNIGT
                     EINKLSYVYVGDPAIRLNYPTKYNVITNQINESTTFGNDTLKALSVAKVQGYIADENG
                     NKIETFNGTVHAVIYDKVQRFTTMDNEKDGTLTYSDRPNILFSGNAEVKNGVFNLSFM
                     LPKDIKYNYGGGRINYYAQDDVNNDEAQGFFENFIIGGTDVNNTSETNGPTVDLFLNS
                     ENFVSGNKVNETPLFIANISDINGINTVGSGIGHDVMLTIDQDPLQSFVLNDYFLAKE
                     NSYTDGAVKYKLPEMKNGKHTLTFRVWDLLNNSTTSTLNFEVVKGLTPTIFNVYNYPN
                     PVKNHTNIVVEHDRPETVLGTTVEVFDLSGRKVWSFSQSSADNISWDLVTNDGKKIKT
                     GVYFYRVNIKTANSDIFSKTNKMLIVEQ"
     gene            2043..>3016
                     /gene="porV"
                     /locus_tag="VI413_09315"
     CDS             2043..>3016
                     /gene="porV"
                     /locus_tag="VI413_09315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IX secretion system outer membrane channel
                     protein PorV"
                     /protein_id="HEY6914861.1"
                     /translation="MKNNLLALCILLSLSIGAFAQSDNNPILTAVPSLSIAPDARAGG
                     MGDIGAATTPDVNSQYWNPAKYVFMESDAGVSLSYTPWLRSLVPDIDLAYLAGYWKLD
                     QSQAVSMSLRYFSLGDIELMDELGYKAGSAHPNELALDGAYSRLFSEKFSGAVALRFI
                     YSDLGNGIGSEEIYPGWTVAADVSAYYKTPISLQNTDGNLGLGLNISNIGGKISYDDF
                     LNSNFIPTNLRLGGSFDYPIDTYNKISFSADVNKLLVPTQNNMTAAQYTNLSPITGIF
                     KSFSDAPGGLKEELSEIMWSVGAEYAYNNQFFVRGGYYNESQFKGNRK"
BASE COUNT          995 a          503 c          579 g          939 t
ORIGIN      
        1 tatttggtaa aggatcattc gataatagaa aaatactgcc taattctggt gataatttcg
       61 ttttgactta cgaagccgag aattcattaa caacaacatt atcttatgtt acagatgatt
      121 attttgcatt gctagatgac aatgaaggga ctcaggttcc atcaaatcta atggatattg
      181 gtgtgggacg ttttacggta agtactcagc aacaagccac cgatgtagtc aataaaacga
      241 ttgattacat gaataatcag tgtaaaggaa attggaaaaa ccaagtatgc tttgtagctg
      301 acgatggaga tggcgcactt cacatgaagc aagcagacag tatagctgtt tcaattgcaa
      361 gaaattttcc ggcttatcag gtaaataaaa tatatctgga tgcgtttata caagaaatca
      421 ctgcgagtgg tgaaagttat ccgttagcaa agagccgatt gttaaatttg atcaggtcgg
      481 gattatttgt actcaactat actggccatg caagtccaaa cggctggtcg aatgaatcaa
      541 ttctgaccgc agccgatgtc aaatctttct caaataaaaa tcttccattg tgggtggctg
      601 ctacttgcga ttttgtgcaa ttcgatgtgc aaacacaatc tgcaggcgaa caagtggttt
      661 tcaacccagc aggtggtggt attggaatat tagctgcagc ccgaccggtt tatgcatctc
      721 aaaatttcac cttagacaaa ttgttttgtg agaatttatt caagattaaa aatggtgaac
      781 acatgcgcgt aggcgatgta attgcttata ctaaaaacaa tattggtact gaaattaaca
      841 aattatcgta cgtttatgtt ggcgaccctg ctataagact aaactaccca acaaaatata
      901 atgtaattac aaaccaaata aatgaaagta caacttttgg taatgacaca ctcaaggcat
      961 tatctgttgc taaagttcag ggttatattg ctgatgaaaa tggaaataaa attgaaacat
     1021 ttaatggtac tgttcatgcc gtaatctatg ataaggtaca gcgatttaca acaatggata
     1081 atgaaaaaga tggtactttg acatattctg accgtcctaa catactattt tccggaaatg
     1141 ctgaagtaaa aaatggtgta tttaacctgt catttatgtt acctaaagat attaaatata
     1201 attatggagg tggcagaata aattattatg ctcaggacga tgtgaacaac gatgaagctc
     1261 aaggtttctt tgaaaatttt attattggcg gaacagacgt aaataacaca agtgaaacga
     1321 atggtccgac tgtagatcta ttcctaaact cagaaaactt tgtatctggt aataaagtaa
     1381 acgaaacccc actttttata gccaacattt cagatataaa tggtataaat acagtgggga
     1441 gtggtatagg tcacgatgtt atgctgacaa tagatcagga tcctttacaa tcctttgttc
     1501 ttaatgatta ttttttagca aaagaaaaca gctatactga tggtgcggtg aaatacaaac
     1561 ttcctgaaat gaaaaatggg aaacacaccc ttacttttcg tgtttgggat ctactgaata
     1621 attcaacaac aagcactctc aattttgaag tagtaaaagg attaacacca accattttca
     1681 acgtttacaa ttatcctaat cctgtaaaaa atcacacaaa tattgttgta gagcatgacc
     1741 gcccagaaac tgtactgggc acgactgttg aagtgttcga tttatccgga cgcaaggtat
     1801 ggtctttttc tcaatcgtca gcagataata ttagttggga cttagtaaca aacgatggca
     1861 aaaagataaa aaccggggtt tacttttata gagtaaatat caaaacagcc aatagcgata
     1921 tcttttcaaa aaccaataaa atgttgattg ttgaacaata aaatcaaaat tctacgttta
     1981 tttatttaat ttcttgttta attttagtat tattgtactc tcaaaaaaaa tataatttcc
     2041 gaatgaaaaa taacctttta gcactgtgta ttttactatc actttcaatt ggcgcttttg
     2101 ctcaaagcga taataatcca atccttacag ccgttccatc attatctatt gcccctgatg
     2161 ctcgtgctgg cggtatgggt gatattggtg ctgcgactac gcccgatgta aactcacaat
     2221 actggaatcc ggctaaatat gtttttatgg aaagtgatgc gggtgtatca ttatcatata
     2281 ctccatggtt gcgtagtttg gtgcctgata tcgacttagc atatctggcc gggtattgga
     2341 aattagacca aagccaggca gtgagtatgt cattacgtta tttctcgctt ggagatattg
     2401 aattaatgga cgaattgggt tataaagccg gatctgctca cccaaatgaa ctcgctcttg
     2461 atggagctta ttcccgctta ttttctgaaa aattttcagg tgcagtagcg ctccgtttta
     2521 tctattccga tttgggaaat ggtataggaa gtgaagagat atatccgggt tggactgttg
     2581 ctgcagatgt ttcggcatat tacaaaaccc ctatttcatt acaaaataca gatggcaatt
     2641 taggattagg gttgaatatt tccaacatcg gtggtaaaat ttcttacgac gattttttaa
     2701 atagtaattt tattccgaca aatttaagat taggaggttc atttgattat cctattgaca
     2761 cttacaataa aatttctttc agtgcagatg taaacaagtt attagttccg acacaaaata
     2821 acatgactgc cgctcaatac actaatttat cgccaattac cggtattttt aaatcattct
     2881 cagacgcccc tggtggttta aaagaagaat tgagtgaaat aatgtggtcg gtaggtgctg
     2941 aatatgcata caacaatcag ttttttgttc gtggtggtta ttataacgaa agccagttta
     3001 aaggaaaccg taaata
//
LOCUS       DATDNM010000551         3190 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1246936, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000551 DATDNM010000000
VERSION     DATDNM010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1246936"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..577)
                     /locus_tag="VI413_09320"
     CDS             complement(<1..577)
                     /locus_tag="VI413_09320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914862.1"
                     /translation="MKSKLSSFIAPLLFIFALISCIDFVDSPYPTLNLKQIHTISGLA
                     RATATSFVINDKAYITLGRAGGKDKGSLNDCWQFNPTDSSWTRKSNFPGHSRVGAIAE
                     VINGKAYVGFGYNTDLFVYASDTTIFSDFWMYDPLFDKWTKKASFPSKASSKDVPVNS
                     CSSFTYKKWIYLFAFSAQTHPNNEVWRYNTED"
     gene            complement(594..1910)
                     /locus_tag="VI413_09325"
     CDS             complement(594..1910)
                     /locus_tag="VI413_09325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914863.1"
                     /translation="MNLFWKNLFGGITPTAKLEKNELELVRAMERYAEVEKSVELAEY
                     KKLFHVVKAASFQENKKILQNRKYKDTEEYQIHKKYHKLHNSPAIKLYFEVLESEELK
                     HYLKFKSTSDYELLGDKKKLNASESLRKMKAFEKSKAFKTYSRFHDSFIIKEYEELKI
                     KVSSPEFKKANEFWANEKRWHSTPEFVQQERFYELAKNPDIVFFENEKPERFEKYRSL
                     KLTFQDEFDWNTLDKSHWNFGFHYKSAALIGNHSFINEKQANNSGKNVSVENGVLKIA
                     TKHEKVSARAWHPQKGFMEKEYHFTSDVLQTANAFSQKYGIIRAKLRCTGNVQHAFWL
                     GADGKLPHINIFHFNGKQISVGNANKNLFDSVKISGLNPSQYFIYTLMWSKKELIWLI
                     NDLEVHRTASNIPDETMFLAFNSFISEKQHGSAGSIEVDWVRVYEN"
     gene            complement(1924..2472)
                     /locus_tag="VI413_09330"
     CDS             complement(1924..2472)
                     /locus_tag="VI413_09330"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEY6914864.1"
                     /translation="MNIAVFCSSSNHIADHYKQAAYHLGELIAESGNTLVYGGATGGL
                     MDSVAEGAQSKNGQILGVIPHAVIKMNRQSSLPTQLITVETMSERKAQMKELADAFVV
                     LPGSYGTLDEMLDIVASGIVGEHKKPLIIVNQDGFYNQFLSQIDFMRLESFIPTDEKY
                     KPFVSLNVNQCMELVNSTIKNS"
     gene            complement(2561..>3190)
                     /locus_tag="VI413_09335"
     CDS             complement(2561..>3190)
                     /locus_tag="VI413_09335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005783987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEY6914865.1"
                     /translation="AKQGRSRQFQAILPLRGKILNVEKAMQHKVLESEEIRNIYTALG
                     VTIGTEDDSKALNIKKLRYHKIIIMTDADVDGSHIATLIMTFFFRHMKELIEQGYLYI
                     ATPPLYLCKKGKVEEYCWTDLQRQAFIEKYGGGTEGGIHTQRYKGLGEMNEIQLWDTT
                     MNPENRTLRQVTIENAATADHVFSMLMGDDVAPRRQFIEQNATYAKIDA"
BASE COUNT          870 a          613 c          589 g         1118 t
ORIGIN      
        1 catcttctgt gttgtaacgc cagacttcat tattcggatg ggtttgggca ctgaatgcaa
       61 acaaatatat ccattttttg tatgtaaaac tagagcatga atttacaggt acatctttgc
      121 tgcttgcttt ggaggggaag cttgcttttt ttgtccattt gtcaaagaga gggtcgtaca
      181 tccaaaaatc agaaaagata gtagtatctg atgcatatac aaataaatct gtgttatatc
      241 cgaatcctac ataagctttc ccatttatta cctcggctat tgcgcctact ctgctgtgtc
      301 ccggaaaatt ggatttacga gtccaactgc tatctgtagg attaaactgc cagcagtcat
      361 ttaaacttcc tttgtcttta cctcccgctc tacctaaggt gatatatgct ttatcattta
      421 ttacaaagga agttgctgta gcacgtgcta atcccgaaat tgtgtgaatt tgttttaggt
      481 ttaaggttgg atagggtgaa tcgacaaaat caatacacga aatcaatgca aagataaata
      541 aaagtggagc tatgaaagat gataattttg atttcattac gagttgtata atcttaattc
      601 tcatacactc ttacccaatc aacctcaatg cttccagcac taccatgttg tttttctgaa
      661 ataaaggagt tgaatgcaag gaacattgtt tcatctggaa tattactggc tgtgcgatga
      721 acttccagat catttatcaa ccatattaat tcttttttac tccacattaa ggtgtaaata
      781 aagtattgtg acggatttaa tccggatatt tttacgctgt cgaaaagatt tttattggca
      841 tttcctactg atatttgttt cccattgaaa tggaagatat ttatgtgagg aagtttccca
      901 tctgctccta accaaaaggc gtgttgcaca ttacctgtac agcgaagttt tgccctgata
      961 ataccatatt tttggctaaa tgcatttgca gtttgaagaa catctgaagt gaaatgatat
     1021 tctttttcca taaaaccttt ttgaggatgc caggccctag cactgacctt ttcgtgttta
     1081 gtggcaattt tcaacactcc attttctacc gaaacatttt ttccggagtt atttgcctgt
     1141 ttttcattga taaatgaatg gttgccaata agcgcagcac ttttgtaatg aaatccaaaa
     1201 ttccaatgcg atttgtctaa tgtattccag tcaaattcat cctgaaaggt tagttttaat
     1261 gagcgatatt tctcaaatct ttcgggtttt tcgttttcaa agaaaactat gtccggattt
     1321 tttgctaatt cataaaagcg ttcttgctga acaaattcag gtgtactatg ccagcgtttc
     1381 tcgttagccc agaactcatt tgctttcttg aattcaggag aagaaacttt aatttttaat
     1441 tcctcgtatt ctttaattat aaacgaatca tgaaaacggc tgtatgtttt aaaagctttc
     1501 gatttttcga atgctttcat ttttctgagt gattctgacg catttaattt ctttttgtcg
     1561 cccaatagtt cataatcaga tgtggattta aactttaggt aatgcttcaa ttcctctgat
     1621 tccaacacct caaaatatag ttttatggca ggtgagttgt gcagtttatg atatttttta
     1681 tgtatctgat actcttcggt gtctttatat ttacggtttt gcagaatctt tttattttcc
     1741 tgaaaagagg ctgcttttac cacatgaaaa agcttcttgt attcagcaag ttcgaccgat
     1801 ttttcaactt cagcataacg ttccatggct cgaactaatt cgagctcatt tttttcaagt
     1861 ttagccgttg gagtaatacc tccaaaaaga tttttccaaa acagattcat attgtaatgg
     1921 gtattatgag tttttaattg tagagttaac taattccatg cattgattta catttaagct
     1981 tacaaatggt ttgtattttt catctgttgg aataaatgat tcgagccgca taaaatctat
     2041 ctgactgaga aactgattgt aaaagccatc ttgattgacg ataatcaacg gttttttatg
     2101 ttcgcccaca atacctgaag ccacaatatc gagcatctca tctaaagtgc cgtaacttcc
     2161 gggcagaact acaaacgcat cagcgagctc tttcatttgt gcctttcgct cgctcatagt
     2221 ttcaactgtt attaattgcg ttggtaacga actttgacgg ttcattttga taactgcatg
     2281 tgggatgacg ccaagaattt gaccgttttt gctttgagcc ccttcagcaa cagaatccat
     2341 taaaccaccg gttgcaccgc catatacaag cgtatttcca ctttcggcaa ttaattcacc
     2401 taagtggtat gcagcttgtt tataatggtc ggcaatgtga ttgcttgagg agcagaaaac
     2461 ggctatgttc atgtttggtt attcgtaaat tggttgaatg gttaattggt tactaattca
     2521 aacttggaga acataataac caattaacta atttccaata ttaagcgtca attttcgcgt
     2581 acgttgcgtt ttgttcaatg aactgacgtc gtggcgccac atcgtcgccc atgagcattg
     2641 agaatacgtg gtcggcagtg gctgcgtttt caatcgtaac ctgacgcaag gtgcggtttt
     2701 caggattcat ggttgtatcc cacaattgaa tttcgttcat ctctcccaaa cctttatagc
     2761 gttgtgtatg aattccacct tctgttcctc caccgtattt ttcaataaat gcctgacgtt
     2821 gaaggtcagt ccagcaatat tcttctactt tccctttctt acacagatag agtggaggag
     2881 tggcaatgta caaataaccc tgctcgatca actctttcat gtggcggaag aagaacgtca
     2941 tgatcagcgt ggcaatgtgg cttccgtcca cgtcggcatc tgtcatgatt atgattttgt
     3001 ggtagcgaag tttttttatg ttcaatgcct tgctgtcatc ttccgtacca atagtaacgc
     3061 ccaaagcagt atatatattg cgtatctctt cactttcgag tactttgtgt tgcatggctt
     3121 tttccacatt cagaatttta ccacgcaatg gtaggatcgc ctgaaattga cggctacgac
     3181 cttgtttggc
//
LOCUS       DATDNM010000552         6149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_70405, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000552 DATDNM010000000
VERSION     DATDNM010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6149
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70405"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..949
                     /locus_tag="VI413_09340"
     CDS             <1..949
                     /locus_tag="VI413_09340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY6914866.1"
                     /translation="SLKVGEWVLAVGNPFNLASTVTAGIVSAKARNINIINSQMKIES
                     FIQTDAAVNPGNSGGALVNTRGELVGINTAIASQTGSYAGYAFAIPVSIVQKVVADLR
                     QYGVAQRAMLGVKIGDINSDLAKEKGLKTLEGAYVGEVTDNSAAKKAGIKEGDIINSV
                     NGVRVKSATELQEQIGRYRPGDKVTVTVVRKDSEEKLTVELKNSQGNTGVVSFTNSSD
                     ALGATYKEINDKTRQQLGLDYGIEIKSLSKGKFADAGIKPGFIILKINNQAIRTEQDV
                     QAAYDAAINNGEPEKVFYIAGVYPNGKITYYAINLVDEK"
     gene            1412..2275
                     /locus_tag="VI413_09345"
     CDS             1412..2275
                     /locus_tag="VI413_09345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008625412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD/SigA"
                     /protein_id="HEY6914867.1"
                     /translation="MRQLKITKSITNRESASLDKYLQEIGREDLITVEEEVELAQRIR
                     AGDRIALEKLTRANLRFVVSVAKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKF
                     ISYAVWWIRQSILQALAEQSRIVRLPLNQVGSLNKINKAFSKFEQENERKPSPEELAD
                     VLDIPVDKIADTMKVSGRHISVDAPFVEGEDNSLLDVMINDDSPNADRSLINESLSKE
                     IERVLAFTLSDRERDIVKKFFGIGVAEMTLEEIGDEFGLTRERVRQIKEKAIRKLRPN
                     AKSKLLKGFLG"
     gene            complement(2414..3637)
                     /locus_tag="VI413_09350"
     CDS             complement(2414..3637)
                     /locus_tag="VI413_09350"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006102 - isocitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEY6914868.1"
                     /translation="MSKIKVTNPVVELDGDEMTRIIWAFIKEQLILPYLDLDIKYYDL
                     SIQNRDLTNDQVTVDSANAINKYNVGIKCATITPDEARVEEFGLKKMWKSPNGTIRNI
                     IGGTVFREPIVMSNVPRYVQGWTKPIVIGRHAFGDQYKATDTVIKGKGTLKMTFTNEA
                     GETKEWEVYNFEGDGVAMTMYNTDESIYGFARSSFQVALEKKWPLYLSTKNTILKAYD
                     GRFKDIFQEVYENEFQAAFKEAGITYEHRLIDDMVASCMKWNGGFVWACKNYDGDVQS
                     DTVAQGFGSLGLMSSVLVTPDGKTVEAEAAHGTVTRHYRQHQQGKSTSTNPIASIFAW
                     TRGLMHRAKLDGNAELHNFCEKLEQVCIETVEAGEMTKDLAVLIYGDNVTSENYLSTE
                     DFLAALKRNLEAKLG"
     gene            complement(3741..5096)
                     /locus_tag="VI413_09355"
     CDS             complement(3741..5096)
                     /locus_tag="VI413_09355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005643724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEY6914869.1"
                     /translation="MEKDYLIYKLSETIKTTSRIDKELFTQYNVKRGLRNEDHSGVLV
                     GLTKVGDVVGYEKLPEGGLKAVPGKLFYRGLDVEDLVHGLEKENRLGFEETAFLLLSG
                     YLPDAEELKAFSQILTQSMALAQKATMNIIDLEGQDIMNILARSVLELYTFDPNPDDI
                     SRDNLIRQSIDLIAKFPTIVAYAFNILRHSQQGRSLHIRHPNDEMSYAENFLYMMKGP
                     GNYTELDVKILDLTLILHADHGGGNNSTFTVRVTSSTQTDTYSSIAAGIGSLKGPLHG
                     GANIKVVQMFEHLKTAIKDWTNVKEIDAYLKKMLNKEAYNKSGLIYGIGHAVYTISDP
                     RALLLKEMARKMAVEKGIEREFAFLELLDERAVNAFMTFKGEGINKQVCTNVDFYSGF
                     VYDAIGLPSEIFTPMFAMSRVAGWTAHRIEELNFASKRIIRPAYKNVGERKPFVPLKD
                     R"
     gene            complement(5190..>6149)
                     /locus_tag="VI413_09360"
     CDS             complement(5190..>6149)
                     /locus_tag="VI413_09360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY6914870.1"
                     /translation="RETDQPERPNSIITSFNRNFAKRADGNPNTHTFIGSPEVVAALT
                     IAGDLCFNPLKDTLLNEKGEKIKLQEPHGYELPPKGYAVEDPGYIAPTSNENEITIDP
                     QSKRLQILQPFAAWDGKDLVDQPLLIKAKGKCTTDHISMAGPWLRFRGHLDNISDNML
                     IGAVNSFNDKTNTVLNAETGEYTAVPALARKYKAQGTGSIVVAEENYGEGSSREHAAM
                     EPRFLNVKAILVKSFARIHETNLKKQGMLALTFADKNDYDKVREDDKISILGLTEFTP
                     GKNLKIELKHSDGSVDRFEVLHTYNEAQIEWFKSGSALNAMKK"
BASE COUNT         1728 a         1196 c         1287 g         1938 t
ORIGIN      
        1 ttcgctgaaa gtaggcgagt gggtgttggc ggtaggtaat ccgttcaact tggcatcgac
       61 agttacagca ggtattgtaa gcgctaaagc cagaaatatc aatatcatta actcccagat
      121 gaaaatagaa tcgtttatac aaacggatgc ggctgtaaac cctggcaata gtggaggcgc
      181 cctggtgaat acgcgtggcg agctggtggg tattaatacg gctattgcat cgcagacagg
      241 ctcttatgcc ggttatgctt ttgcgattcc ggtaagtatt gttcaaaaag tggtggcgga
      301 ccttcgccag tatggcgtgg cgcagcgagc tatgcttgga gttaaaattg gagatataaa
      361 ttcggacctg gcaaaagaaa agggcctcaa aactctcgaa ggagcttatg ttggtgaagt
      421 gacagataac tcggcagcaa aaaaagcagg aataaaagaa ggcgatatta tcaacagtgt
      481 caatggtgtg agggttaagt cggcaacaga attgcaggaa caaatcggac gttatcgccc
      541 tggtgataaa gtaacggtta ctgtcgttag aaaagactcg gaagaaaaac tgactgtaga
      601 actgaaaaat agtcagggaa atactggggt agtttcgttt acaaatagtt ctgatgcatt
      661 aggagcaacc tacaaggaaa ttaatgacaa aacacgtcag caattaggat tggattatgg
      721 tatcgaaatc aaatcattat cgaaaggtaa atttgctgat gccggaatta agccagggtt
      781 tattattctg aaaataaaca atcaggccat cagaacggag caagacgtac aagcggctta
      841 tgatgctgca atcaataatg gggagcccga aaaagtattt tatattgctg gtgtttatcc
      901 aaatggaaag attacttatt atgcgattaa ccttgtagac gaaaagtaaa ttgattattc
      961 ataaattagc ttaaaaacag aacaggcgta acaatgttgc tcctgttctg tcgttttatc
     1021 atcaattgaa aacattttta gtcgtttagt gtttatttat taaatgttta aaatctatta
     1081 atgaaattca atgaaatggc tattggtagc gatattttac attttctcca gagaatgatt
     1141 caacctttgt tattacaatg ttaactgatt caaagtcccg ataatagcag ctataataga
     1201 tttacttttt ttgagtgaag ttcagaataa tgttttgaaa ctgttctaat ttgtaaattc
     1261 cgtactatat ttcaataaac aagcaataat ttataaactt actcacttat actttgttag
     1321 gatattaata agtagcatat tcttttaccc gttttcgttt ggctaatccg aaaataatga
     1381 ctacttttgc aagctaattt tcatcaataa aatgagacaa ttaaaaataa ccaaatcaat
     1441 cacgaatcgt gaaagtgctt ctcttgataa gtatttgcaa gagattggac gcgaagatct
     1501 tataactgtt gaagaagaag ttgagttggc tcaacggatt cgtgcaggtg accggatagc
     1561 gttggaaaaa ctgacacgtg ctaacttacg cttcgttgtt tcagtagcaa aacagtacca
     1621 aaatcaaggc ctcagtctac cagacttaat caatgaaggc aaccttggac tgattaaagc
     1681 cgctgaaaaa ttcgatgaga cacgtggatt caagtttatt tcgtatgccg tttggtggat
     1741 tcgccaatct attttgcagg ctttagcaga gcagtcacgt attgttcgtt tgccattgaa
     1801 tcaggtagga tcattaaaca aaatcaacaa ggctttctct aaatttgaac aggagaatga
     1861 acgcaaacct tctccggaag agctagctga tgtactggat attccggttg acaaaattgc
     1921 agatacaatg aaagtatcgg gacgccatat ttcggtggat gctccgtttg ttgaaggtga
     1981 ggacaacagc ttgttggatg taatgattaa cgatgattct cccaacgctg accgttcatt
     2041 gatcaacgaa tcactatcta aagaaattga acgcgtattg gcatttacat tgtcagacag
     2101 agaacgcgat attgtaaaaa aattctttgg aatcggtgtg gctgaaatga cactcgaaga
     2161 aatcggcgat gaatttggct tgacacgtga acgtgttcgc cagataaaag aaaaagcgat
     2221 tcgtaaattg agaccaaatg ctaaaagcaa attattaaaa ggatttttgg gttaaccgga
     2281 acgatagtac ggttttctta aatttgaata cgaagcaacc tgaaagggtt gcttcttttt
     2341 ttttgtagta tgtttttaga acaaatagag acgcgattat tcgcgtctct acaatgatat
     2401 aatttggaaa taattatccc agcttagctt ccagattccg ttttaatgca gctaagaaat
     2461 cttctgtact caggtagttc tcgctggtta cgttgtcgcc ataaataaga acagccaaat
     2521 ctttggtcat ttcaccggct tcaaccgttt cgatacaaac ctgttccagt ttttcgcaga
     2581 agttatgcaa ttcggcgttt ccgtccaatt ttgcacggtg cattaagccg cgtgtccatg
     2641 caaagataga tgcaatcgga ttggttgaag ttgattttcc ttgctgatgc tggcgataat
     2701 gccgtgttac agttccgtga gctgcttcag cttctactgt ttttccatcc ggagtaacaa
     2761 gcactgaaga cataaggcct aatgacccga aaccttgtgc tacagtatcg gattgaacgt
     2821 caccgtcgta gtttttacaa gcccaaacga acccgccgtt ccatttcata caagaggcca
     2881 ccatatcgtc aataagtcga tgctcgtaag taattcccgc ttctttaaat gctgcctgga
     2941 attcattttc atatacttcc tggaaaatat ctttgaaacg tccgtcgtaa gccttcagga
     3001 tggtgttttt agtagaaagg tacaatggcc attttttctc caaagccacc tggaatgagg
     3061 aacgggcaaa gccgtagatc gattcgtcgg tgttgtacat ggtcattgcc acgccgtctc
     3121 cttcgaagtt atatacttcc cattcttttg tttctccggc ttcgttggtg aaagtcattt
     3181 tcaaggtacc tttacctttt attacagtat cagtagcctt gtattggtca ccaaaagcat
     3241 gacggcctat tacgataggt tttgtccagc cttgtacgta gcgtggcacg ttgctcatta
     3301 caatcggttc gcggaaaacg gtgccgccaa tgatgttgcg gattgtgccg tttggagatt
     3361 tccacatttt ttttaatcca aactcttcta cccgggcttc gtcaggggta atggtagcac
     3421 atttaattcc tacattgtac ttgttgatag cgtttgctga atcaacagtt acctgatcgt
     3481 ttgtcaggtc acgattttga atgctcaaat cgtagtattt gatatctaaa tcgagatagg
     3541 gaagaataag ttgttctttg ataaacgccc aaatgattcg ggtcatttcg tcgccgtcga
     3601 gttcaacgac aggattggtt acttttattt tactcatata tttagtctgc tgacaataag
     3661 tcaacggaca acggtcaaaa gacttgtttt gaaaattaag tctttgggct gttgtccgtt
     3721 gccaatcgtc taattattta ttatctgtct tttaatggca caaatggttt acgttcgcca
     3781 acatttttgt aagcaggacg aatgatgcgt ttacttgcaa aattcaattc ttcaatacgg
     3841 tgtgctgtcc aaccggctac acgtgacatg gcgaacatag gagtgaagat ttcactaggc
     3901 aaaccaattg catcatatac gaatccggaa tagaaatcga cgtttgtaca tacttgtttg
     3961 ttgattcctt cacctttgaa tgtcatgaaa gcattaactg ctctttcgtc cagaagttcc
     4021 agaaatgcaa attctctttc aatccctttt tctacggcca ttttacgggc catttctttc
     4081 agcaataatg cgcgtggatc ggaaatagta taaacagcat ggccaatacc ataaatcaaa
     4141 ccgcttttgt tgtaggcctc tttgttcaac atttttttca aatacgcatc gatttccttt
     4201 acatttgtcc agtctttgat agctgttttc aagtgctcaa acatttgcac cactttgata
     4261 tttgcaccac catgcaaagg accttttaat gaaccaatac ctgccgcaat cgatgaataa
     4321 gtgtctgttt gtgtagaact tgtaacacga actgtgaatg tagagttatt acctccaccg
     4381 tggtcggcat gaagaataag ggttaaatcc agaattttta cgtctaattc agtgtaattg
     4441 cccggacctt tcatcatgta caggaagttt tctgcatagg acatctcatc gttcgggtga
     4501 cggatatgta atgaacgccc ttgttggctg tggcggagaa tattgaatgc ataagcaaca
     4561 atagtaggga atttggcaat cagatcaatg gattgacgaa taaggttgtc gcgtgaaata
     4621 tcgtccggat ttggatcaaa agtatacaac tccaatacgc tacgagccaa tatgttcata
     4681 atgtcctgtc cttcaagatc aataatgttc attgttgctt tttgagccag tgccatgctt
     4741 tgagtcaaaa tttgagagaa ggctttcaat tcttctgcat cgggcagata acccgacaga
     4801 agcaggaagg ctgtttcctc gaaacccaat cggttttctt tttccagtcc atgaactaaa
     4861 tcctcaacat ccagtccacg ataaaataac tttccgggaa cagctttcaa tccgccttca
     4921 ggtaattttt cgtatcccac aacatctccc actttagtca aaccaactaa cacgcccgaa
     4981 tgatcttcgt tacgtagccc acgttttaca ttgtattgag taaataattc cttgtcgatc
     5041 cgactggttg tttttatcgt ttccgatagt ttgtaaatta aataatcctt ttccatgaac
     5101 ttcgatttta tattgttatt atttcttctt ttcattactt gtttaacacg ccaaaacttc
     5161 gttttgtttt ttaagggttc tatagatttt tattttttca tggcattcaa tgcacttccg
     5221 cttttaaacc attcaatttg tgcttcattg taggtgtgaa gcacttcgaa tctatcaaca
     5281 ctaccatcac tatgttttaa ttcaattttc agattttttc cgggtgtgaa ttcagtaagt
     5341 ccaagtatgc ttattttatc atcctcacgc actttgtcat agtcattttt atctgcaaaa
     5401 gtaagtgcca gcattccctg ttttttcagg ttggtttcgt gtatgcgggc aaatgatttt
     5461 accagaatgg cttttacatt caggaaacgg ggttccatag ctgcatgttc gcggcttgaa
     5521 ccttcgccgt agttttcttc cgccacaacg attgatcctg ttccctgtgc tttatattta
     5581 cgggccaacg ccggaactgc tgtgtattcg cctgtttcgg cattaagcac ggtgtttgtt
     5641 ttgtcgttga acgaattcac cgcgccaatc agcatattgt cggaaatatt gtccaaatgt
     5701 cctcggaagc gtagccatgg tccggccatc gagatatggt cagtggtaca ttttcctttt
     5761 gctttgatga gcagcggttg gtcaaccagg tctttgccat cccatgctgc aaaaggttgc
     5821 agaatttgca ggcgttttga ttgcggatcg attgttattt cattttcgtt actggttggt
     5881 gcaatgtagc cggggtcttc aacagcatag ccttttggag gcagctcata tccgtgtggc
     5941 tcctgcagct ttattttttc acctttttca ttcagcagag tgtctttcaa cgggttgaaa
     6001 cacaaatcgc cggcaatggt caatgcagcc acaacttccg gtgagccgat aaaagtatgt
     6061 gtgttgggat tgccatcggc acgttttgca aagttccggt tgaacgaagt gataattgaa
     6121 ttcggacgtt ccggttggtc ggtttcacg
//
LOCUS       DATDNM010000553         6019 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1032066, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000553 DATDNM010000000
VERSION     DATDNM010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6019
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1032066"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..569
                     /gene="mscL"
                     /locus_tag="VI413_09365"
     CDS             162..569
                     /gene="mscL"
                     /locus_tag="VI413_09365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HEY6914871.1"
                     /translation="MGLVSEFKAFAMRGNVVDLAVAVIIGGAFGKIVTSFVADVVMPP
                     IGLLVGGVNFTDLKWVMKAPEMVNGVQKAAVTMNYGNFLQVTFDFLIVAFVIFMAIKG
                     LASLSKKKEEAPAPPAPTKEEQLLTEIRDLLKK"
     gene            748..1548
                     /locus_tag="VI413_09370"
     CDS             748..1548
                     /locus_tag="VI413_09370"
                     /inference="COORDINATES: protein motif:HMM:NF021443.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5668 domain-containing protein"
                     /protein_id="HEY6914872.1"
                     /translation="MENEVKNSFRSGYTKGLGFGLILMLIGIVFLGFNFGLIPEQLRH
                     VIISWPMLLIVIGVGNYFKRHVFSGTILVLIGSFFIFPRFIEAYPTSFPGFNGDFTHV
                     YWPLLLIAAGILIITGRIFGPKWGINEWNHSHDQRYHHHRRHHQRDYSQWNSNTDGFS
                     KNSVFGSGEHIVLDPEFKGGELNAVFGGITLDLRRTNLPEGDTRLDVNAVFGGITIFV
                     PSDWYIETHLDAVFGGFQDNRMPKEPLDKTRKLIITGSCVFGGGELRN"
     gene            1587..2411
                     /locus_tag="VI413_09375"
     CDS             1587..2411
                     /locus_tag="VI413_09375"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEY6914873.1"
                     /translation="MLHPFLENTAKTVQYILLWLVYALVQTLVLYPIITMPLGIVVLD
                     SFVHAALFGLLGILLWSIVQYGNYAVLSVQQRVINYAALALLTISIWLGAGYGLFYWI
                     YGAEYSARFFAILPIRGFIGLLIYLLIIQRFRFVFQQTEKTVEPDPIEIPREIKPQKV
                     VVETELLERIEVKSGSKIHVVLVPEIVYLQADGDYVQIFTNDGKYLKEQTMKYFEEHL
                     PENQFVRVHRSVIVNVEMISRIELYEKQNQLLTLKNGEKIKTSPAGYKALRGALNL"
     gene            2455..2988
                     /locus_tag="VI413_09380"
     CDS             2455..2988
                     /locus_tag="VI413_09380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914874.1"
                     /translation="MKRLFLPILLIAISLTSCDTLSKLTQFEMPFTASVTVPASLPIN
                     LPFSLPTIPIETNSAAFFSSKNISTDLIDKIVLKKLEMTVTSPANGNFNFLKNIEIYI
                     SADGLDDVKVASLENIPNNAAMPLQLVVDTVNLKQYILKDKFGLKVKAITDEMTTSEY
                     QISINTTFLVDAKIAGL"
     gene            complement(3060..5876)
                     /gene="uvrA"
                     /locus_tag="VI413_09385"
     CDS             complement(3060..5876)
                     /gene="uvrA"
                     /locus_tag="VI413_09385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010538961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEY6914875.1"
                     /translation="MSKQGNIIIKGARVHNLKNIDVEIPRNQLVVITGLSGSGKSSLA
                     FDTLYAEGQRRYVESLSSYARQFLGRMSKPEVDFIKGIPPAIAIEQKVNTRNPRSTVG
                     TSTEIYEYIKLLYARIGKTYSPISGELVKKHEAQDVIDAAMEFADGTKFMMLTPIVPT
                     QDRNINEQLTSLQLQGFSRVEVNGETFQIAELLKQITKTDKKDVYLLIDRLAVEHTQT
                     AISRLTDSIETAFFEGNGVCVLKIMTENEPQMLYFSKKFEADGMQFETPTVHTFSFNS
                     PIGACPVCEGFGRVIGIDEDLVVPNKTLSIYEDAVVCWKGEVMSEWKNQLIRTATKFN
                     FPIHKPYYELTDEQRQLIWTGNQYFEGLNAFFKHLESNQYKIQYRVMLARYRGKTTCP
                     ECNGSRLKKEASYIRIAGKSISELVLLSVKNLNDFFENIELDEQDAAIAKRLLIEINN
                     RIHFLLDVGLGYLTLNRLSNSLSGGESQRINLATSLGSSLVGSLYILDEPSIGLHSRD
                     THLLIKVLKQLRDLGNTVVVVEHDEEIMRAADYIIDIGPNAGRLGGNVVFQGTPDLTD
                     PTKNDAIAEQIEHSYTLKYLLGKEHIEIPAHRRKWNNYIEVIGARENNLKGINVKFPL
                     NIMTVVTGVSGSGKSSLVRNVFYTALKKHYGGVADRTGQFGTLKGSMHLAKDIEFVDQ
                     NPIGRSSRSNPVTYIKAYDEIRKLFADQQLSKQMNYSASHFSFNTEGGRCEECQGEGT
                     VTVEMQFMADLVLECEHCHGKRFKQDILDVQYKGVNIFDVLEMTVNQAIEFFSEQTGN
                     TEKKIVKRLKPLQDVGVGYVKLGQSSSTLSGGESQRVKLASFLANEKSEPTIFVFDEP
                     TTGLHFHDIKTLLKAFDALITKGHTVIIIEHNIEVIKCADHIIDIGPEGGDNGGNLVF
                     EGVPEKIIDCANSYTGKFLKEKIN"
BASE COUNT         1649 a         1182 c         1252 g         1936 t
ORIGIN      
        1 gataaccagt ctttctgtta ttttgatatg tgcggagaaa ttgaaggttt ttatactgct
       61 cattaaacaa aacgaccaga tatttagtta tataatttta ttgcaataga tatgattctg
      121 taattatgta ttaataatca ataaactaaa aattaattat tatgggttta gtctctgaat
      181 ttaaagcttt tgccatgcgt ggcaatgtgg tagatttggc agttgccgta attattggcg
      241 gtgcatttgg aaaaattgtg acttcgtttg tagccgatgt agttatgccg cctattggat
      301 tattggtcgg cggagttaat tttactgatc tcaaatgggt catgaaagct ccagaaatgg
      361 ttaatggagt tcagaaagcc gctgtaacga tgaattatgg caacttcctg caggtaactt
      421 tcgattttct gatagtcgct tttgtaattt tcatggctat aaaaggactt gcctcacttt
      481 caaagaaaaa agaagaagct ccggctccgc cagcacctac taaagaagaa caattgctta
      541 cagaaatccg cgatttattg aaaaaataaa aagcctgcct acctacaaaa atgccctatt
      601 cgcaataaat atttgcaaat agggcatttt tgtaggtagt tttccatatc ttcgtcggga
      661 aaaaacagtt tcttcatcga tttatacttg ttttgggttt gattatgcct gtatctttgc
      721 agcataaatt ttaaaacaaa aattattatg gaaaatgaag tgaaaaattc gttccgttcg
      781 ggctatacaa aaggtcttgg cttcggactt atattgatgc ttattggcat tgtttttctt
      841 ggctttaatt ttggactgat tcctgaacaa ttaagacatg ttatcatttc atggcctatg
      901 ttgctgattg ttattggtgt gggtaattat tttaaacgcc atgtcttttc gggaactatc
      961 ctggtactga tcggcagctt ttttatcttt cctcgtttta tagaagctta tccgacctcg
     1021 tttcctggat ttaatggtga cttcacccat gtttactggc ctttattgct tattgctgcg
     1081 ggtattctaa ttattacagg tcgtattttc gggcctaaat ggggcattaa cgaatggaat
     1141 cattcacacg accaacgcta tcaccatcat cgccgccacc accaacggga ttattctcaa
     1201 tggaattcga ataccgatgg tttttcgaaa aacagcgtat tcggaagtgg tgaacatatt
     1261 gtgcttgatc ctgaatttaa aggtggtgaa ctgaatgctg tttttggtgg aataacactt
     1321 gacttgcgca gaacaaattt gcccgaaggt gatacgcgtc tggacgtaaa tgccgttttt
     1381 ggtggaatta ctatttttgt accaagcgat tggtatattg aaacgcattt agatgccgtt
     1441 tttggcggat ttcaggataa ccgaatgccc aaagagccac tcgacaaaac cagaaagctg
     1501 attatcaccg gttcatgcgt gtttggtggt ggagaattga gaaattaatg gactgctttc
     1561 aataaccagt cactgaaatt gaaaagatgc ttcatccatt tttagaaaat acggctaaaa
     1621 cggttcaata tatcctcctt tggttggtgt atgcattggt gcagacattg gttctgtacc
     1681 cgattattac gatgccgctc ggaatcgtcg tgttggacag ctttgtccat gcagcattat
     1741 ttgggctgtt aggtatactt ctctggagca ttgttcagta tggaaattat gccgtattga
     1801 gtgtgcagca gcgggtaatt aattatgctg ccttggcgtt actgactatt tccatttggt
     1861 taggtgcagg gtacggattg ttttactgga tctatggcgc tgaatatagt gctcggtttt
     1921 ttgcaatact tccaattcgt ggctttattg ggttgctgat ttacttgttg attattcaac
     1981 ggtttcggtt tgtattccag caaactgaaa agactgttga gcctgacccg atagaaatac
     2041 caagggaaat caagccgcaa aaagtagttg ttgaaacaga gttgctggaa cgaatcgagg
     2101 ttaaatcagg atccaaaatt cacgtggtgc tggttccgga aattgtatat ttgcaggccg
     2161 atggagatta tgttcagata tttacgaacg atgggaagta tcttaaagaa caaaccatga
     2221 aatattttga agaacatttg ccggaaaatc agtttgtccg tgtgcaccgg tcggtgattg
     2281 taaatgtgga aatgatttcg cggatagaac tttacgaaaa gcaaaatcag ttacttacgc
     2341 tgaagaacgg agagaagatt aaaacaagtc cggccggata taaagcatta cgtggtgcgt
     2401 tgaacctttg aacataattg tggtcaatct tgtttggaaa agtaaaacac aagtatgaaa
     2461 agactttttt taccaatcct tcttattgca atttcactga caagttgcga tacgctgagc
     2521 aaactgactc aatttgaaat gccatttact gcttcagtta ctgttcctgc ttcattacct
     2581 ataaatctgc catttagttt accaacaatt ccaattgaaa caaattcggc tgcattcttt
     2641 tcttcaaaaa atataagtac tgatttaatt gataaaatag tactaaagaa actggaaatg
     2701 actgtaactt ctcctgcaaa cgggaatttc aattttttga aaaatattga aatatacatc
     2761 tctgccgacg ggcttgatga tgtgaaagtt gcttcgttgg aaaatatccc gaacaatgca
     2821 gctatgcctt tgcaactggt agtcgatacc gtaaatttaa aacagtatat tctaaaagac
     2881 aaatttggac tgaaagtaaa agctattacc gatgaaatga ctacgtcgga atatcaaatt
     2941 tctataaata ccactttttt agttgatgcg aagattgctg gtttgtagaa attaaatgtt
     3001 ttcaggactg tattgaataa aaaaagcagg cttttaaggg aacttaaaag cctgttttgc
     3061 taatttatct tttctttcag gaatttgcct gtgtatgaat tggcgcagtc aatgattttt
     3121 tcgggaaccc cttcgaaaac caggtttcca ccgttatcgc caccctcagg accaatatca
     3181 ataatgtggt cggcacattt aatcacttca atgttgtgtt cgataataat tacggtatgt
     3241 cctttggtaa tcagtgcatc gaaggcctta agaagcgttt tgatatcgtg aaaatgaagt
     3301 ccggttgtcg gttcatcaaa aacgaaaatg gttggttctg atttttcatt ggccaggaaa
     3361 gacgctagtt tcacccgctg gctttcacca cccgaaagcg tgctgctcga ttgtccgagt
     3421 tttacataac ccacacctac atcctgtagt ggtttaaggc gttttacaat tttcttttcg
     3481 gtatttccgg tttgctccga gaaaaattca atagcctggt tgacggtcat ttccaataca
     3541 tcgaaaatgt tgacgccttt atattgcacg tccagaatgt cttgtttgaa acgttttcca
     3601 tgacagtgtt cgcattcgag tactaaatcg gccataaatt gcatttccac tgttaccgtg
     3661 ccttcgccct ggcattcctc acaacgtccg ccttctgtgt taaacgaaaa atgggacgcc
     3721 gaataattca tttgtttcga aagttgctgg tcggcaaaga gtttccggat ttcgtcgtag
     3781 gcttttatgt atgtcaccgg attggatcgc gacgaacgtc caatcgggtt ttggtcaaca
     3841 aactcaatgt ctttggccaa atgcatgctg cctttgagtg ttccgaactg cccggtccgg
     3901 tccgccacac caccgtaatg ttttttcagg gcggtgtaaa acacgttgcg caccaatgac
     3961 gacttcccag agccactcac tccggtaaca acggtcatta tattcagcgg aaattttaca
     4021 ttaatgcctt tcaggttatt ctcgcgggcg ccaattactt caatgtaatt attccacttc
     4081 cggcggtgag ccggtatttc aatatgctct tttccaagca ggtatttcag tgtataggag
     4141 tgttcaattt gctctgcaat agcatcgttt tttgttgggt cagtcaaatc gggcgttccc
     4201 tgaaatacca cgtttccacc caatcgtcct gcattcggac caatatcgat aatgtagtcg
     4261 gcagcacgca taatttcctc atcgtgctca actacgacca ctgtattacc caggtcgcgg
     4321 agttgtttca atacttttat cagtaaatgg gtgtcgcgcg agtgaagtcc aatgcttggt
     4381 tcatccaaaa tgtacaagga gcccaccagg ctgcttccga gcgaagtggc caggttaatg
     4441 cgctggcttt caccacccga aagtgaattc gaaagacgat tcagggttag atagcccaaa
     4501 ccgacatcta acagaaaatg tatccggttg ttgatttcga tcaaaaggcg tttggcaata
     4561 gcagcatcct gttcatctaa ttcgatattc tcaaagaaat cattcagatt tttcaccgac
     4621 agaagtacca gctccgaaat cgattttcct gcgatgcgta tataagaagc ttcctttttc
     4681 aaccggctgc cattacattc cgggcaggta gttttaccac gataacgtgc caacataacc
     4741 ctgtactgga ttttatactg gttagactcc aaatgtttga aaaatgcatt taatccttca
     4801 aaatactgat tcccggtcca gatcaattgg cgttgttcgt cagtcaactc gtaatagggc
     4861 ttgtgaatag ggaaattgaa tttcgttgct gtgcggatga gttgattttt ccactcgctc
     4921 attacttcgc ctttccagca gaccactgca tcttcgtaaa tggagagcgt tttgttgggt
     4981 accaccaggt cttcgtcaat tccgattacg cgtccgaaac cctcacatac cggacaggct
     5041 ccgatagggc tgttgaaact aaacgtgtga actgtaggcg tttcgaattg catgccatcg
     5101 gcttcaaatt tcttcgagaa atagagcatc tgcggctcat tttcggtcat tatttttagc
     5161 acgcaaactc cgtttccctc aaaaaatgca gtttcaattg aatctgtcaa tcggctgatg
     5221 gcagtttgcg tatgttccac tgccaatcgg tcgatcagta aataaacgtc ttttttatca
     5281 gttttagtta tttgtttcag caattcggca atctgaaatg tttcaccgtt cacttccacc
     5341 cggctgaacc cctgcaactg caggcttgtc agttgttcgt ttatatttct atcctgagtc
     5401 ggaactatcg gtgtgagcat catgaatttt gttccatcgg caaattccat ggcagcatca
     5461 atcacatctt gtgcttcatg tttttttacc agctcgccgg atattggcga gtaagttttg
     5521 ccaatgcggg cgtaaagcaa ctttatatat tcataaattt cggtagatgt cccaactgtg
     5581 gagcgtggat tccgggtgtt tactttttgc tcaatggcaa ttgccggtgg aattcccttg
     5641 ataaaatcaa cttcgggttt actcattctt cccaaaaact ggcgtgcgta tgacgaaagg
     5701 ctttctacat aacggcgttg accttctgcg taaagtgtat caaatgccaa tgaagatttc
     5761 cctgagccgg ataatcctgt aattactacc agttgattac gtggaatttc cacatctatg
     5821 tttttcaggt tgtgaaccct ggcgcctttt atgattatat ttccttgttt ggacatgagt
     5881 ttaaataatt cgtaattaaa ccgtttctgg ttataattgg ttggtgaaaa tgttttcgtc
     5941 caacaatcga ttatcaacaa aaacagtcaa ttaaattgga cctgcaaaga tactacttaa
     6001 gatatgaata attaataat
//
LOCUS       DATDNM010000554         3038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_818354, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000554 DATDNM010000000
VERSION     DATDNM010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3038
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_818354"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /locus_tag="VI413_09390"
     CDS             complement(<1..710)
                     /locus_tag="VI413_09390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY6914876.1"
                     /translation="MTISDIALKRPIGSIVLSLIIILMGVVGFNFLAVRLYPAIDPPI
                     ITVQTSYTGANSEIIESQITEPLEKAINGIEGVKSISSQSAIGSSNITVEFELGADLE
                     KAANDVRDKVSQGMRSLPQDIDAPPIVTKADANSEPIIMLTVQSSTMNTIELSDYAET
                     VLQEKLQTIPGVSSVGIYGQQRPAMRLWFDAKKMAAYNLTAADVNVALQKENVEMPGG
                     KIRGNTTELIIKTRGRLIT"
     gene            complement(707..1777)
                     /locus_tag="VI413_09395"
     CDS             complement(707..1777)
                     /locus_tag="VI413_09395"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY6914877.1"
                     /translation="MKKKSTIWIAAVFILLALFFVKIGFSKSSDKEGKKDGKEKAQKK
                     VNGYVVKPSLLITEISVSGSLVAFDEVELKNEVAGRVVMINLPEGKFVKKGTLLVKLF
                     DDDLQATLKKQEAQLAIQQQIYKRQTELLKVNGISQNDYDQTGLQLNSLKADIEVQKT
                     LIRKTEIRAPFDGVIGLRNVSVGAIVTPSTLMTTIRTENKIKLDFSVPEKYSSAINPG
                     MKVSFSMNKENMKFNATVIATEKGIDASTRNLKVRALVNSQSAELVPGAFANVTLRLN
                     ENNNAIMIPSLALIPQEDNKTVIVAKNGKAHLVEIKTGIRQSTNIEVLEGIQAGDTVI
                     TSGLQFLKEDSKLNYSTITSKL"
     gene            1994..2779
                     /locus_tag="VI413_09400"
     CDS             1994..2779
                     /locus_tag="VI413_09400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEY6914878.1"
                     /translation="MEYFEVFLKPEAWIALLTLTFLEMVLGIDNIVFISIVSSKLKKE
                     EQPKARSMGLMIAMLFRIILLLGIQVVMSLTDPIFEFDFSWIKGGITGQSIIILAGGL
                     FLLYKSVTEIHHKLEGEEEVGNKKAISKLSAAIIQIAILNLVFSFDSILTAIGLVSFT
                     EFGAGALSIMIVSVILSILIMMAFAGPVSKFVHEHPTIQMLGLSFLILIGVMLITEAS
                     HSSNLEILGSHVGTIPKGYLYFAIAFSLLVESLNMKMRKKAVK"
     gene            2790..>3038
                     /locus_tag="VI413_09405"
     CDS             2790..>3038
                     /locus_tag="VI413_09405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase UvrD2"
                     /protein_id="HEY6914879.1"
                     /translation="MENTSPYYQLAHDFALFTNRSIFLTGKAGTGKTTFLHKLKKETK
                     KQMAVVAPTGVAAINAGGTTMHSFFQLPFTPYLPTAEGR"
BASE COUNT          875 a          607 c          542 g         1014 t
ORIGIN      
        1 gtgatcaacc ggccccgggt tttaatgatt aattcagtag tgtttccgcg gatttttcca
       61 cccggcattt ctacattttc cttttgcaat gcaacattta catcggctgc agtcagattg
      121 taagctgcca ttttttttgc atcaaaccac aaccgcatag ccggtcgttg ttggccataa
      181 attccgacag aacttacgcc aggaatagtt tgaagttttt cctgtaaaac agtttcggcg
      241 taatcactaa gttcaatagt attcattgta ctgctctgaa ccgtaagcat aataatcggt
      301 tcactattcg catcagcttt ggtaacaatg ggtggcgcat caatatcctg aggtaaacta
      361 cgcatgccct gcgatacttt atcgcggaca tcattggcag ctttttccaa atccgcacca
      421 agctcaaatt ctacggtaat attactagag ccaattgccg attgggatga aatggatttt
      481 acgccttcta taccattaat ggctttttcc aacggttcgg taatctgcga ctcaataatt
      541 tcgctatttg ctccggtata actggtttga acagtaatta taggtggatc aatggccgga
      601 tacaagcgta cagccaaaaa attaaatccg acaactccca tcagaatgat aatcaaactc
      661 aagacaatgg aacctatcgg gcgtttaagt gcgatatctg atatggtcat agcttgctgg
      721 taattgtaga ataatttaat ttagagtctt cttttaaaaa ctgaagacct gaagtaataa
      781 ccgtgtcgcc tgcctgaatt ccttcaagaa cttcaatgtt ggttgattgg cgaataccgg
      841 ttttaatttc aaccaaatgt gccttgccat ttttagccac aatcactgtt ttgttatcct
      901 cttgtggaat taaagccagt gacggaatca ttatcgcatt attattctca ttcaggcgaa
      961 gcgttacatt agcgaatgca ccgggcacta gttctgctga ttgagaatta accaatgctc
     1021 tcactttcag attccgcgta gaagcatcaa ttcctttttc ggtagctatt acggttgcat
     1081 tgaacttcat attttctttg ttcatgctaa atgatacctt catccccgga ttaatggcag
     1141 agctgtattt ctcaggcacg ctgaagtcaa gttttatttt attttcagtg cgaatggtag
     1201 tcattaaagt tgaaggagtt acaatagctc cgacacttac atttcttaag ccaataacac
     1261 catcaaaggg agcacgaatt tccgttttcc gtatcaatgt tttctgaacc tcaatatcag
     1321 cttttaatga attgagctgc aagccggttt ggtcatagtc attttggctt attccattca
     1381 ctttcaatag ttcagtctgc cgtttgtaaa tttgttgttg aatagcaagt tgcgcttcct
     1441 gtttctttaa agtagcctgt aaatcatcgt cgaacagctt gaccagtaac gtgcctttct
     1501 ttacaaattt tccttccggt agattaatca ttactaccct tccggctact tcatttttta
     1561 attcgacctc atcaaatgcc accaatgagc cggagacaga gatctcagta ataagtaatg
     1621 aaggcttaac tacgtaacca ttcacttttt tctgggcttt ttcctttcca tctttttttc
     1681 cttccttatc ggatgattta ctgaagccaa tttttacaaa aaaaagagct aacaatataa
     1741 agacggcagc aatccagatg gttgatttct ttttcattgc agagaataat tttttatacc
     1801 taaaaaataa aagcggctgt ttttcagccg aatcatattt gattgaattt tgaccaaaag
     1861 gtttaaaaga acttgtaaaa ttagctataa ttttatagaa atcaccctca tatcttttca
     1921 ttttattatt ttacaattct tcttgtgtaa atcatttttt ttttcaatct ttgtacataa
     1981 taaattaaca catatggagt attttgaagt ctttttaaaa cccgaagctt ggattgcttt
     2041 actaacacta acttttttgg aaatggtatt gggaattgac aatatcgtat ttatctccat
     2101 cgtatcatca aaactaaaaa aagaagagca gcccaaagcc cgatcaatgg gtttaatgat
     2161 tgctatgtta ttcagaatca tacttctgtt gggtattcag gttgttatga gcctaaccga
     2221 tccaatcttt gaattcgatt ttagctggat aaaaggcgga ataaccggac aaagtatcat
     2281 cattcttgcc ggaggtttat tcctacttta caaaagcgtt accgaaattc atcataaact
     2341 ggaaggtgaa gaggaagttg gaaataaaaa agctatttca aaactatcag ccgccatcat
     2401 ccagatagcc atcctgaatc ttgttttttc gtttgattca atcctcactg ccattggatt
     2461 agtaagtttt accgaatttg gtgccggagc tttatccatt atgattgttt cggttatact
     2521 gtctatcttg attatgatgg cttttgccgg accggtaagc aagtttgtac acgaacatcc
     2581 tacaatccaa atgcttggtc tgtcattcct gattttgata ggtgttatgc ttatcacaga
     2641 agcttcacat tcatccaatc tcgaaatttt gggaagccat gtaggaacta ttcctaaagg
     2701 ctacttgtat tttgccattg ctttctcgtt gctggtagaa tcgttgaaca tgaaaatgag
     2761 aaagaaagcc gtaaaataaa tgtattataa tggaaaatac ctctccttac tatcagcttg
     2821 cgcatgattt cgctttgttt accaatcggt ctatttttct taccggaaaa gccggaacag
     2881 gaaaaacaac tttccttcat aagctaaaaa aagaaacaaa gaaacagatg gctgtggttg
     2941 caccaacggg tgtggcagct ataaatgctg gtggaacaac aatgcattct ttttttcaat
     3001 tgccttttac tccctatttg ccaacagccg aaggacgt
//
LOCUS       DATDNM010000555         4591 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1032343, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000555 DATDNM010000000
VERSION     DATDNM010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4591
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1032343"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..401
                     /locus_tag="VI413_09410"
     CDS             <1..401
                     /locus_tag="VI413_09410"
                     /inference="COORDINATES: protein motif:HMM:NF023179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type IX secretion system membrane protein
                     PorP/SprF"
                     /protein_id="HEY6914880.1"
                     /translation="SPVVEWNDNAGVNLKGSLFLTGGYNYILPDTKYVFKPSALFKTN
                     FTTMQFDLSSRLEYDNKYWGGLAYRFQDAVILIAGLNVTGGLSIGYSYDFPTSKILTA
                     SSGSHEIVMLYSFEYVFAKRNSKYKSIRIL"
     gene            460..1824
                     /locus_tag="VI413_09415"
     CDS             460..1824
                     /locus_tag="VI413_09415"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HEY6914881.1"
                     /translation="MKKNLPIIVLALLLVACNKPAGELVGLGTKDSFQEAQPYGMVFI
                     KRGSFLMGANDQSAIGAINTKSINVSVDAFWMDECEITNDKYKQFVYWVRDSIALRLL
                     VMGGKDEYRMKFKNQTEDAAPEVARLNWHSKNLWNSKDEEVKNILSTLYYNDNNALGF
                     KKQIDPGKLQYKYEWINYDQAALPKNKYDVNTGAYPANAIARVDTSYVENGVIVNKTI
                     ERKLTSRRDLISTRIVNVYPDTIMWLRDFQFSYNDPKMRMYFSHPGFANYPVVGVTWE
                     QCQAFCQWRTQLFNSANSIGGQDYRLPTEAEWEYAARGGKNMALYPWGGNYVRDDKGC
                     FLANFKPMRGSYTDDEGATTMKVAMYQPNDFGLFDMAGNVAEWTSSAYDVSSSKLIAD
                     MNPSFQYNAKNSDPDVLKRKVIKGGSWKDIAYYLQCGVKTYEYQSESRPYIGFRCVRS
                     YNGE"
     gene            1855..2736
                     /gene="gldL"
                     /locus_tag="VI413_09420"
     CDS             1855..2736
                     /gene="gldL"
                     /locus_tag="VI413_09420"
                     /inference="COORDINATES: protein motif:HMM:TIGR03513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility protein GldL"
                     /protein_id="HEY6914882.1"
                     /translation="MSQNESKFDIWWNSPNVKRLVGVVYSLGASVVIIGAMFKILHLP
                     GAAQVLGTGMTVEAVLFALGIFDKPHKEYDWHKVFDFEGNEITTQTEGYSQKNGVSAS
                     TSVGLNYSETLSDNDVKKLSEGIKNLATTAEQFSSLSNVVGATDNFVKNIDSASKATG
                     NFVQSQESLTGASNKLANSYLGVSTDMEEVVKNTKQYAGKVEDITKNLSSINSIYEIQ
                     LKNIQAQTEELTQQTEQVRLVSNKLEAVIGETEKIKTATTAAATETEKYKEGTLKLSK
                     QIADLNQVYGNMLNALS"
     gene            2803..4326
                     /gene="gldM"
                     /locus_tag="VI413_09425"
     CDS             2803..4326
                     /gene="gldM"
                     /locus_tag="VI413_09425"
                     /inference="COORDINATES: protein motif:HMM:TIGR03517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility protein GldM"
                     /protein_id="HEY6914883.1"
                     /translation="MSGAKNCPETPRQKMIGMMYLVLTAMLALNVSSSILEGFTMVDN
                     SLHTTIESANVRNNAQYSDFQSLYDKNPTKVREWLERAKQVKTKSDELYNYIEKFKVD
                     IVKLTDADEANDSAYVKQIKGKDNLDKAGEYGIIKGNGKKLREKINDYTNFLVSLSAG
                     NEPKIKMYQSIFSTNKSRDGKPWEESMFEMMPVAAVITVLTKYQSDVRASEAEIVQYL
                     KAQTDASDFRVNKIEALVIPDSRYVIRGDRFKARIVLSAVDSTQNPQFYVNGANIAKG
                     LYEVGCTSVGPKTYSGQISIPGNDGIMRSYGFKGDYMVGEPSATMSNEDLNVVYKGID
                     NKFSVSVPGVAAANISIRVDGGSGTQVSPGRFIIRPARDGEIRINVFAKIDKKDLAMG
                     GANYRVKYLPDPKAFLQPNDAGAKPIRGGFMAPGLLKSSSLIASYGNDELVKANFTVT
                     GFTMIAKGLNPQTVSGSRLSTNFVDKLLKGDILMINNIKAVGPDQRVRDLGSISIQL"
     gene            4365..>4591
                     /locus_tag="VI413_09430"
     CDS             4365..>4591
                     /locus_tag="VI413_09430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914884.1"
                     /translation="MKKYWIITLLIFLSVSTHSLRAQSNPMSFFEKNGTVALQTTSMN
                     ALADTIAVLNHRFDDIVWSRIVYRVIDMRDK"
BASE COUNT         1614 a          689 c          928 g         1360 t
ORIGIN      
        1 atagtcctgt tgtagaatgg aacgataatg caggagttaa tttaaaagga tcactgtttt
       61 taaccggcgg atataattat attttgccgg acacgaaata tgtatttaaa ccgagtgctt
      121 tgtttaaaac aaatttcaca accatgcaat ttgatttatc ctcgcgcttg gaatatgata
      181 ataaatattg gggaggactt gcttacagat ttcaggatgc agtgatatta atagccggat
      241 taaatgttac cggaggttta tcaattggat attcatacga tttccctaca tcaaaaatat
      301 taaccgccag ttcaggctca cacgaaattg tgatgttgta cagtttcgaa tatgtttttg
      361 caaaaagaaa tagcaaatat aaaagtataa ggatattata aagcctttgc tcattaatta
      421 aagaatttca gtttttattt ctaaaaaaat cgcataagaa tgaaaaaaaa tctgccaata
      481 attgtactcg ctttactgct tgttgcatgc aataagcctg caggtgaatt agtgggtctg
      541 ggaacgaaag actcatttca ggaagcccaa ccctatggaa tggtatttat caaaagaggg
      601 tccttcctta tgggagctaa tgaccagtca gccatcggag cgattaatac taagtctata
      661 aatgtatcgg ttgatgcatt ttggatggat gaatgtgaaa tcacaaatga caaatacaaa
      721 caatttgtat attgggttcg ggattcgata gcattacgtt tattagttat gggcggtaaa
      781 gatgagtacc gaatgaaatt taaaaatcaa acggaagatg cagctcctga agttgctcgt
      841 ttaaactggc attctaaaaa tctttggaat tcaaaagatg aagaagtcaa aaatatttta
      901 agtactctat attacaatga taataatgct ttaggtttta aaaagcaaat tgatccgggt
      961 aaacttcagt acaaatatga atggatcaat tatgaccaag cagcattacc aaaaaacaaa
     1021 tacgacgtta atacaggcgc atatcctgca aatgcaatag cccgtgtaga tacttcatac
     1081 gttgaaaatg gtgttattgt aaataaaaca atagaacgca aacttacttc acgcagagat
     1141 ttaatttcaa caagaatagt aaacgtatat cccgatacta ttatgtggtt gcgtgatttc
     1201 cagttctcat ataatgatcc taaaatgcgt atgtattttt cccatccggg atttgcaaat
     1261 tatcctgttg ttggtgtaac atgggaacag tgccaggctt tctgccaatg gagaacccaa
     1321 ttatttaaca gcgctaatag tatcggagga caggattacc gcttaccgac agaagcagaa
     1381 tgggaatatg ctgcccgtgg aggaaaaaac atggcgctat atccttgggg aggaaattat
     1441 gtgcgcgatg ataaaggatg ctttttggct aactttaaac ctatgagagg tagttatacc
     1501 gacgatgagg gtgctacgac aatgaaagtt gctatgtacc agccaaatga ttttggatta
     1561 ttcgacatgg caggtaatgt tgctgaatgg acatcttctg cctacgatgt ttcaagtagc
     1621 aaacttattg ccgatatgaa tccaagtttt cagtataatg ctaaaaatag tgatccggat
     1681 gttctaaaac gaaaagtaat taaaggtgga tcatggaaag atatcgccta ctatttgcaa
     1741 tgtggtgtaa aaacttatga atatcaaagt gaaagccggc cttatattgg tttccgttgt
     1801 gttcgctcat acaatggaga ataattaggt ttataatata taaaaaataa aaatatgtct
     1861 caaaacgaaa gtaaatttga tatctggtgg aattcaccaa atgtaaaacg cttggtaggc
     1921 gttgtgtata gtttgggcgc ctcagtggtt attattggag caatgtttaa aatcttacat
     1981 ctaccaggtg ctgctcaggt attaggtacc ggtatgacag ttgaggccgt actgtttgct
     2041 ctgggtattt ttgataaacc acataaagaa tatgactggc ataaagtttt tgattttgaa
     2101 ggaaatgaaa ttacgactca gacagaaggg tattcacaaa aaaatggagt ttctgcttca
     2161 acaagtgtcg gacttaatta ctctgaaaca ttaagcgata atgatgtaaa aaaattgtct
     2221 gagggcatta agaatctggc aactactgct gagcagtttt cgagtttatc aaatgttgtt
     2281 ggtgccacag ataattttgt aaaaaacatc gattctgcat caaaggcaac aggaaacttt
     2341 gttcaaagtc aggaatcttt gacaggagca tctaataaat tggcaaattc gtacttaggg
     2401 gtttctactg atatggaaga agtagttaaa aacaccaaac aatatgcagg aaaagtggaa
     2461 gatatcacta agaatctgtc ttcaattaat tctatttatg aaattcaatt aaaaaatatt
     2521 caggctcaaa cagaagaatt gacacaacaa acagaacaag ttcgcttagt aagcaataaa
     2581 ttggaggctg ttattggaga aactgaaaaa ataaaaacag caacaacagc tgcagctacc
     2641 gaaactgaaa agtataaaga aggaacgctt aaattatcta agcaaattgc tgatttaaat
     2701 caagtttacg gaaacatgtt aaacgcgctt agttaattct acgggattta catagtgaga
     2761 tttatattag ctttttatca aattttttaa acaagaattc caatgagtgg agccaagaat
     2821 tgtccggaaa cgccaaggca aaaaatgata ggtatgatgt atttagtgct tacagcaatg
     2881 ttagcgttga atgtatcaag cagtatttta gagggattta ccatggtgga caatagttta
     2941 catacaacca tagaatcagc caacgtgaga aacaatgctc aatactctga ttttcaatct
     3001 ctatacgata aaaatccgac aaaagtaaga gagtggttgg aaagagcaaa acaggtaaaa
     3061 accaaatcag acgaattgta taattatatt gaaaaattca aagtagatat agtaaagctg
     3121 accgatgctg atgaagccaa tgatagtgct tatgttaagc aaatcaaagg aaaagacaat
     3181 ttggataaag ccggcgaata tggtattatt aaaggaaatg gaaagaagtt aagagagaag
     3241 attaatgatt acacaaactt tttggttagt ttatctgctg gtaatgaacc taaaattaaa
     3301 atgtatcagt caatattttc tacgaataaa tccagagacg gaaagccatg ggaagaatca
     3361 atgtttgaaa tgatgcctgt tgcagcagta attacggtat tgacaaaata tcaaagtgat
     3421 gttcgtgctt ctgaagctga aattgttcaa tatttaaaag cccaaactga tgcttcagat
     3481 tttagggtaa ataaaattga agcgttggtg attccagact caagatacgt aattcgtggc
     3541 gatagattta aagcaagaat agtactctca gctgtagact ctactcaaaa tcctcagttt
     3601 tacgtaaatg gagcaaatat agctaaagga ctttatgaag taggctgtac aagcgtaggt
     3661 ccaaaaacgt attctggtca gatatctatt ccgggcaatg atggcattat gagatcttat
     3721 ggtttcaaag gcgattatat ggttggtgaa ccatctgcaa caatgtccaa tgaggacttg
     3781 aacgttgttt acaaaggaat tgataataaa ttcagcgttt cggtacctgg agttgcggcc
     3841 gccaatatta gcataagagt tgatggtgga agtgggacac aagtctctcc tgggcgtttt
     3901 attattcgac cggctcgtga tggtgaaatt agaatcaatg tttttgctaa gattgacaag
     3961 aaggatttag ctatgggtgg agcaaattat cgggttaaat atcttcctga tccaaaagca
     4021 tttttacaac caaatgatgc tggtgcaaaa ccaattcgtg gtggttttat ggctcctggt
     4081 ctattaaaaa gcagttcatt aattgcaagt tatggtaatg atgaacttgt aaaagcaaac
     4141 tttactgtaa ccgggtttac tatgattgca aaaggattaa atcctcaaac agtatcaggt
     4201 tcccgtttaa gtactaattt tgttgataaa ttgcttaaag gcgatatatt aatgattaat
     4261 aatattaaag cagtaggtcc cgaccaaaga gtaagggatt taggctcaat aagtattcaa
     4321 ctttaagcac agaactttat attaacatat aaatcatcta caatatgaaa aaatattgga
     4381 ttattacatt actaatattt ctctcagttt ctacacattc attgagagct caatcaaatc
     4441 caatgtcctt ctttgaaaag aatggtacag ttgctttgca aacaacatca atgaatgctc
     4501 tggcagatac aatcgccgta ttaaatcaca gatttgatga tattgtatgg tcgagaattg
     4561 tgtatcgggt tatagatatg agagataaac a
//
LOCUS       DATDNM010000556         4509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_178324, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000556 DATDNM010000000
VERSION     DATDNM010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4509
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178324"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1328)
                     /gene="gldE"
                     /locus_tag="VI413_09435"
     CDS             complement(<1..1328)
                     /gene="gldE"
                     /locus_tag="VI413_09435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated protein GldE"
                     /protein_id="HEY6914885.1"
                     /translation="METDAFYSIFGGITVHPVTLTAIVSLLVSALLLVFSAVISASEV
                     ALFSLDPQTMNELEESDRKGDRNILRLLKTPQRLLATILIAQNFLNVAVILLLTHFTT
                     TVLNFDSAPILGFVFQTVIITFAILLFGEIIPKVYATQYAKKTSFYTVPFLSGLEKLL
                     GPFVSILVNSTSMVNNRLAKHNRSNISLDELSHALELTSNSKDEDTEILEGIIKFGNI
                     QVVDIMTSRVDMVVVDIKSNYKQLLDVIIESGYSRIPVFAGTRDNIKGLLYSKDLLPH
                     LDKPANFRWQSLIRQAYYVPETKMIDDLLLEFQENRVHLALVVDEYGGTSGLVTLEDI
                     LEEIVGDISDEYDDEVQLFTKLDNHTFIFEAKILLNDFFKIAEIEEDDFVKVTEEVET
                     LAGLILELKGDIPSKNERIDYGRYVFEIMAVDNRRIKKVKLHIKDDFKNS"
     gene            complement(1497..1874)
                     /locus_tag="VI413_09440"
     CDS             complement(1497..1874)
                     /locus_tag="VI413_09440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914886.1"
                     /translation="MNLKLKKGLTIGTILAVLVFGCWIFFKFYFVFGEGVKAGELNYF
                     VHKGYVFKTYEGKMIQAGFRSQTAGTIQSYEFAFSVNDKTVADSLMRCSGKQVELHYK
                     EYLGALPWRGVNKFVVDEIVSVK"
     gene            2062..3165
                     /locus_tag="VI413_09445"
     CDS             2062..3165
                     /locus_tag="VI413_09445"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY6914887.1"
                     /translation="MEDKLVTLAIRTYQRAQMIKTVLEENGIETVIHNLNLEHPEMAV
                     GVRVRIKESDLPRALKIVEEMESEWERQTTVETTSVQKLLIPIDFADIVTKATDFGFH
                     FADILAAEVVFMYVYFSPTFTISSNNDMSTYSISDSELLRRIISSANADVENMTNLIH
                     ARIAKGELPNIPFSFELKEGVPEDQILDYCKKNKPALVVMGTHGKKLSNELIGSVTAE
                     VMESCVSPVFAVPVQMTMESPDDIKRVAFLTNFDQKDLIAIDRAISLFASDNLELFFI
                     HAAEKKEPWDEVMLAGIKAYFSSHYPNLTTNYALLGAINSPEILDHYLVDQKINVLAF
                     NTRRRNIFARLFNPGLVYKMVMHSDTPLFVTHV"
     gene            complement(3201..3596)
                     /locus_tag="VI413_09450"
     CDS             complement(3201..3596)
                     /locus_tag="VI413_09450"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002558147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEY6914888.1"
                     /translation="MATIFSRIVAGEIPCYKIAEDDRFFAFLDISPLAKGHTLVIPKK
                     EVDYILDLDDTMLADMMIFAKKVGLAIEKSVSCVRIGMAVIGLEVPHAHIHLIPINSE
                     SDMNFKNPKLKLSQDEMNEIAETIRQKLK"
     gene            complement(3648..4118)
                     /gene="greA"
                     /locus_tag="VI413_09455"
     CDS             complement(3648..4118)
                     /gene="greA"
                     /locus_tag="VI413_09455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008147156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEY6914889.1"
                     /translation="MAINYMTAEGYKKLVEELNELERVQRPAISKQIGEARDKGDLSE
                     NAEYDAAKEAQGMLEMRISNLKDMVASARMIDESKINTKEVQILTRVKIKNTKTDQIM
                     TYMIVSESEANFKEGKLSVTTPIAKGLLGKKVGEKASVAVPSGTLEFEVVEISL"
BASE COUNT         1438 a          894 c          749 g         1428 t
ORIGIN      
        1 tctgagtttt tgaaatcatc ttttatatgc aacttcactt tttttattct gcggttatcc
       61 acagccataa tttcgaaaac gtacctgcca taatcaatgc gttcattttt tgaaggaata
      121 tcacctttca gttcaagaat aagacctgcc agcgtttcca cttcttcagt aactttcaca
      181 aaatcatctt cctcaatttc tgctatttta aagaaatcat tcaacagtat ttttgcttca
      241 aagatgaaag tgtgattatc taatttagta aataattgta cctcatcatc gtattcgtca
      301 ctgatatctc ctacaatctc ctccagaata tcttcgagcg tgaccaaccc ggaagtgccg
      361 ccatattcat caacaaccaa cgctaaatgc accctgtttt cctgaaattc aagcagcaaa
      421 tcatcaatca tttttgtttc cggcacataa taagcctgac ggatcaggct ttgccaacga
      481 aagttagctg gcttatccaa atgcggcaaa agatctttac tataaagcaa tcctttgata
      541 ttgtcacgtg ttccggcaaa taccggaata cgtgaatatc ctgattctat aataacatct
      601 agcaactgtt tataatttga ttttatatca accactacca tatccaccct ggaagtcata
      661 atatccacca cctgtatatt tccgaattta ataattcctt ccagaatttc agtgtcttca
      721 tctttgctgt tcgatgtaag ttccagggca tgcgataact catccaacga tatattcgaa
      781 cggttgtgtt ttgcaagacg attgttgacc atagaggtag aattaaccaa aatacttacg
      841 aaagggccaa gcagtttttc taatcctgac aggaatggaa ctgtataaaa tgaagttttt
      901 tttgcatact gggtagcata aactttggga ataatttcac caaagagcaa aatagcaaaa
      961 gtaattataa cggtttggaa aacaaaaccc aaaataggag cactatcaaa attcaacacc
     1021 gtagtggtga aatgagtcaa caataaaatt actgccacat tcagaaaatt ttgggcaata
     1081 agaatggttg caagtaagcg ttggggagtt ttgagtaacc ggagaatatt cctgtcgcct
     1141 ttacggtcgc tctcttccaa ttcgttcatt gtttgaggat cgagcgaaaa caatgcaact
     1201 tcagacgcag agataacggc cgaaaaaact aataataaag cgcttacaag aagtgaaaca
     1261 atagcagtta atgttacagg atggactgtt atgcctccaa atattgaata aaaagcgtcc
     1321 gtttccaatg aatcaggttt tagtaaatac aacaacagag acattgtctc tgttgctgca
     1381 aaagtagtta ttttttttca gtttgaataa agtagatagt caaagcgact gagatttatt
     1441 gacaaaaaca aaaattataa aattcatctg ttttagcaaa atatccatat acccgattat
     1501 ttcactgaga caatttcgtc aactacaaat ttattgacac ctctccacgg taaagcaccc
     1561 agatattcct tgtaatgcaa ttctacctgc tttccactgc aacgcataag tgaatctgcc
     1621 acagttttat cattcaccga aaaagcaaat tcataggact gaattgttcc ggctgtctgc
     1681 gagcgaaatc cggcctggat catttttccc tcgtaagttt taaacacata tcctttgtgc
     1741 acaaagtaat tcagttcgcc tgcttttact ccctcaccaa atacaaaata gaatttgaaa
     1801 aatatccagc atccgaacac aagcacggcc agaattgttc caatagtgag tccttttttt
     1861 aatttgaggt tcataacttt tgatttaaga attgttcaaa cgcaaatata gcgcaatttt
     1921 tctattccga gttatttttt ttatctaaaa gaagcattga gtctctaaaa tggctatctt
     1981 tacacacatt aaagtaacac tcgcatctac atatgtgttc acacaattat tgatttgtaa
     2041 accgctctaa tttaaaatat tatggaagac aaattagtta ccctcgccat tcgtacctac
     2101 caacgggcac aaatgattaa aaccgttttg gaagaaaatg gaatagaaac ggtaatacac
     2161 aatctcaatc tggaacatcc ggaaatggct gttggtgtac gtgtcagaat taaagaaagt
     2221 gatttacccc gcgcattaaa aattgtggag gaaatggaaa gtgaatggga aagacaaaca
     2281 actgttgaaa ccacttctgt tcagaaacta ttgatcccta tcgattttgc agacattgtt
     2341 accaaagcaa ccgatttcgg atttcatttt gcagacatcc tggccgctga agtagtattt
     2401 atgtatgttt attttagccc gacatttacg atttcgtcaa acaatgacat gagcacttac
     2461 agcataagtg atagtgaatt gcttcggcgg attataagct cggctaatgc ggatgtcgaa
     2521 aacatgacca atctgattca tgcccgtatt gcaaaaggcg aacttccaaa tattccattt
     2581 agcttcgagt tgaaagaagg agtacctgaa gatcagattc tggattattg caagaaaaac
     2641 aaaccggctt tggtggttat gggaactcac gggaagaaac taagcaatga acttatcgga
     2701 agcgtcactg cagaagtaat ggagtcttgc gtatcgccgg tatttgctgt tccggttcaa
     2761 atgaccatgg agtcgcccga tgatataaag agagtggcat tcctcacaaa tttcgatcaa
     2821 aaagatttaa ttgccataga cagagccatt tcgttgtttg cttctgataa tttggaattg
     2881 ttctttattc atgcagcaga aaagaaagaa ccctgggatg aagtaatgtt ggctggcata
     2941 aaagcatact tttcaagtca ttaccccaat ctgactacaa actatgcctt acttggggca
     3001 attaattccc ctgaaatact tgatcactat ctggttgatc aaaaaattaa tgtattggct
     3061 ttcaatactc gtcgccgaaa catttttgca aggttattta atcccggctt agtttacaaa
     3121 atggtgatgc attcagacac accattattt gttacacacg tataaaaaac aaaggccgta
     3181 aaaaatacgg cctttgtttt ttatttcagt ttctggcgga ttgtttccgc tatttcattc
     3241 atttcatcct ggcttaactt cagcttcgga tttttaaaat tcatatccga ttcagaattg
     3301 atcggaatga gatggatatg tgcatgtgga acttccaacc cgataacagc catacctatt
     3361 cgcacacacg aaacactttt ctcgattgcc aatcctactt ttttcgcgaa tatcatcata
     3421 tcagcaagca tggtatcatc taaatcgaga atgtaatcca cttctttttt cggaattacg
     3481 agtgtatggc ctttagctaa tggactaata tccaaaaaag cgaagaaacg atcatcttcg
     3541 gctatcttat aacaaggaat ttcacctgcc actattcgac taaaaattgt tgccataatc
     3601 agaataattt gaatgttaca acttcataca actaaaaacg atatgaatta aagtgatatt
     3661 tctaccactt caaactctaa tgtacctgat ggaactgcca cagaagcctt ttcaccaacc
     3721 tttttaccaa gtaaaccctt ggcaatagga gttgtaaccg acagtttgcc ttctttgaag
     3781 ttggcttcac tctcagaaac aatcatataa gtcatgatct ggtcggtttt cgtatttttt
     3841 atttttacac gggtaagaat ctgaacctct tttgtattaa ttttagattc atcaatcata
     3901 cgtgctgagg ctaccatatc tttcagattc gaaattctca tttcaagcat accttgtgct
     3961 tctttggcag catcatattc tgcattttca gataaatcgc ctttatcacg cgcctctcca
     4021 atttgttttg aaatggcagg gcgttgcact ctttccaatt cattaagttc ttctaccaac
     4081 tttttgtaac cttcggcggt catataattt atagccatgg cgtttttatt attaggtttt
     4141 taatgtatat aacaaaaaag aattccgaca atatccgccg gaactccagt tcttaagttt
     4201 tgattttacg attacgtggc aaatatacaa gctttttttt agatttatgc taatacattt
     4261 gtgtttaaaa gcatttttag tcgattttgt ttttatttat cctctattac actgtttatg
     4321 tgaagtttat ttccttccat ctcaatgaaa aagcaaaatc aaaacagata caaattgggg
     4381 agtagacaca aaaaacaatg ggtaacttca cagccaccca ttgcacattt taacctaaac
     4441 cttaactatg aaaaatttat ctgtttgttt actctacaaa agtgagaatt attttttgaa
     4501 cacacaaat
//
LOCUS       DATDNM010000557         3667 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1352749, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000557 DATDNM010000000
VERSION     DATDNM010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1352749"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..809
                     /locus_tag="VI413_09460"
     CDS             <1..809
                     /locus_tag="VI413_09460"
                     /inference="COORDINATES: protein motif:HMM:NF025420.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4249 family protein"
                     /protein_id="HEY6914890.1"
                     /translation="MSFVKILLVLLTTLILLSGCSVVEDTPWNNEPVPVVYSVLTPDQ
                     PIQLYLGKSYNGNDTLNTCPYPEAKVYVCGDDSVWVELERSDKDSTIFTVSSSLIKVV
                     KGSTYSLRIELNDRTVHAQTSIPNELGEIIDGECIVTSEHEGGNYTQKRCNLNLKYIL
                     PTTNSCYLTAFSNRIGTTPFLTGESFQYANFFIPSDSASITVNIITVDSALKKFMMAE
                     LDGSMMFDSDDITTIIGSYGGIHPSFSNIKNGVGIFSSFVISSKLIFVTR"
     gene            828..3206
                     /locus_tag="VI413_09465"
     CDS             828..3206
                     /locus_tag="VI413_09465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914891.1"
                     /translation="MKKVIPICFLLLMSGLTVLHAQAYAKKFRLYVKIFDGRTKNGIK
                     RIPVTVMPFNKVIDANNRGELLLNLPLGNYGFKMDTYPFDKKEVKIELKSDTTLLIEL
                     HSPFTSQYIQEVEINAQKPVTTQPAGLEQIDIQTFKVLPALIGERDILKAFALTAGVT
                     SSSEGAADLQVRGGLHGQNLYLLDGIPLYSTEHLFGLVSAYNPIIVKSARLYKSDFPA
                     EYGGKISSVVNVLTQDANPDKFGGEIEISLLSSKALLNIPIVKNKLAVSVSGRISNYS
                     LINLTSLYNSTNSNGNLKLHFGDINANLLWKLSERDKIKLTWFNNSDGIDTKQKEEDV
                     VNSTWMDNKQQNLGLCWYRNINKDFENQLLAYMDSYSFDLGNSNKSTNSTIKNIDQII
                     TGIKSIGLENKLRLKLSNQLNFAAGGSIKMILFSPIQLNHTDTTTTRMQTTPLVHETE
                     GTLYGEAAYQPVKNQKITAGLRASIIGNTSELYPNIEPRIGYHGIFARDFSVSASVCR
                     MTQSVHRLANPGLGIPFEMFLPSIGGLVPESSWNFSLGAAKDISFNKDFLSLKIDSWY
                     KSMNNIAEFQDGYDALSVWYYKFDLTRQTKEVITQGKGKAYGVDFSADYSHKNWSLAV
                     DYTLMQAINRFANLNNGQPFAAATDIRHSLSLTLDRKLSSTLTLGATWQYLSGRPITV
                     PTTIFLYPTVNPETGELSNSYRQFQALESNRNNYRTAPFHKLDVTLTQSYKAFKKFDA
                     SYSIGVYNLYNQRNPYIYYISQKRNINGSYKAVLMSMSMFPILPSFSWSLKF"
BASE COUNT         1176 a          674 c          679 g         1138 t
ORIGIN      
        1 tcatgtcatt tgttaagatt ctattagttt tacttaccac cctaatttta ctgagtggtt
       61 gctctgtcgt cgaagatact ccatggaata atgaacctgt tcccgtggta tattcagtac
      121 ttactcccga tcagcctatt caactttatt tgggaaaatc atacaacgga aatgataccc
      181 tgaacacatg tccctatccc gaagcaaagg tttatgtctg tggtgatgat agtgtatggg
      241 ttgaactgga acggtccgat aaagatagta ccatttttac cgtcagttct agcttaataa
      301 aagtagtaaa gggatcgact tattctttac gcatagaatt aaatgaccgg acagttcatg
      361 cccaaacaag tatacctaac gaattgggtg aaattattga tggagaatgt attgttactt
      421 ccgaacatga aggaggaaat tatacacaga agcggtgcaa tcttaatctc aaatacattt
      481 taccaaccac caacagttgt tatctgacag ctttttcgaa cagaattggt actacacctt
      541 ttctgacagg agaaagcttt cagtatgcca acttctttat tccttctgat tcggcgtcca
      601 taactgtaaa cattataacc gtagactcgg cactgaaaaa attcatgatg gcagaactgg
      661 acggttcaat gatgtttgat agtgatgata ttacaacgat aataggaagt tatggaggta
      721 ttcatccttc cttttcaaac ataaagaatg gtgttggcat tttttcatct tttgttataa
      781 gcagtaaatt gatttttgta acccgttaac acattgacct gcacctgatg aaaaaagtaa
      841 tcccaatttg ttttttgttg ttaatgtctg gtttgactgt cctgcatgcc caggcttatg
      901 caaaaaagtt tcgactatac gtaaagatat ttgatggccg taccaaaaac ggcataaaaa
      961 gaatacctgt aaccgttatg cctttcaaca aagtaatcga tgcaaacaac cgcggagaat
     1021 tattgctcaa tttaccgctt ggtaactacg gttttaagat ggatacttac cctttcgaca
     1081 aaaaagaagt aaagattgaa ttaaaatctg atactacatt gttgattgaa ctacactccc
     1141 catttacttc acagtatatt caggaagttg aaataaatgc ccaaaaacct gttacaactc
     1201 aaccggcagg tttagagcaa attgatattc aaacattcaa ggtattaccg gctttgattg
     1261 gcgaacgtga tattctgaaa gcatttgcac tgactgctgg cgtaacttca agtagtgaag
     1321 gcgcagccga tttacaggtt cgtggaggac tgcatggtca gaatctttat ttgctggatg
     1381 gaattccact ttattcaaca gagcatttat ttggattggt ttcagcctat aatccgatta
     1441 ttgtaaaaag tgcccgactg tataaatcag acttcccggc agaatatggc ggaaaaatat
     1501 cttcggttgt caatgtactc acacaagatg ccaatccgga taaatttgga ggagaaatcg
     1561 aaattagttt attgtccagc aaagccttat tgaatattcc tattgtcaaa aacaaactgg
     1621 ctgtatctgt ttcggggcgt atttccaatt acagtctgat aaatctgacg tcattgtata
     1681 attccaccaa ttcgaatggt aacttaaaat tgcattttgg cgatataaat gctaatttgc
     1741 tttggaaact atccgaaaga gataaaatta aactaacctg gtttaacaat agtgatggta
     1801 ttgacaccaa acaaaaagaa gaagacgttg tcaattccac gtggatggat aataagcagc
     1861 aaaatctggg attgtgttgg tacaggaata tcaacaaaga ttttgaaaat cagttattag
     1921 cttatatgga tagttattcg tttgatttgg ggaattcaaa taaatcaaca aattcaacta
     1981 taaaaaatat tgatcagatt attaccggaa ttaaatcaat tggtttggaa aataaactaa
     2041 gactgaaatt atcaaatcaa ttaaatttcg cagcaggtgg ttcaattaaa atgattctct
     2101 tttcacccat tcagttgaat catacagaca caacaacaac ccggatgcag acaactcctt
     2161 tggtacatga aaccgaagga actctatatg gagaagcagc ctatcagcct gtcaaaaacc
     2221 aaaagataac agccggttta agagccagta ttattggaaa tacttcggaa ttatatccta
     2281 acatagaacc gagaattgga tatcatggca tctttgctcg tgatttttcg gtaagtgctt
     2341 ctgtttgcag aatgactcaa tctgttcacc gattagctaa tccgggttta ggtattccct
     2401 tcgaaatgtt tttaccttcg ataggaggat tagttcccga aagttcgtgg aatttttcat
     2461 taggggcagc aaaagacata tcattcaaca aagactttct ttctttgaag attgactcat
     2521 ggtataaatc aatgaacaat atagcagagt ttcaggacgg ttatgatgcc ctgagtgtat
     2581 ggtactacaa atttgattta acccgacaaa ccaaagaagt tataacacag ggtaagggta
     2641 aagcctatgg tgtagatttt tcggcggatt atagtcataa aaactggtcg ttggctgttg
     2701 attatacatt aatgcaagca atcaatcggt ttgccaatct gaataacggt caaccttttg
     2761 ccgctgctac ggatattcgt cattcccttt cactgacatt ggatcgtaaa ctttcttcaa
     2821 cgttgacttt aggagctacc tggcaatacc tttcaggcag acccataacc gttccaacaa
     2881 caatcttcct gtatccgaca gttaatccgg aaaccggaga attatcaaac tcttaccggc
     2941 aatttcaggc attggaatcc aatcgaaaca attaccggac agcacctttc cataaacttg
     3001 acgtaacttt aactcagagt tataaagcat ttaaaaagtt cgatgccagt tattcaatag
     3061 gagtctataa tttgtacaat caacgcaatc cctacattta ctatataagc caaaaacgaa
     3121 atatcaacgg atcttacaaa gcagttttga tgtccatgtc tatgttcccg attctgcctt
     3181 cgtttagttg gtcgttgaaa ttttaattcc atttaaatag ttctatatcc tgattcccta
     3241 tttcgtccag gtctgtatat ttgcattcag tgcatagcgc aagtctgagt gaaacggaga
     3301 cttgtgctga attgaaaatc atcgaagcta aaatatgagc agtttgtaac tgggtttaat
     3361 gttcagttac aagttgcttc ggttttcggt ccaaagcccg tccgatcacc gacggattac
     3421 acttcgttaa acttgaacta aacacacagt gcaaacttgg aataaatcgg gggttttcaa
     3481 caattaagtg aaaccgcacg aattcaggct tttagtgaat tccgataata attgttatcc
     3541 tttcagcatt gaatttggat gtaattgtca ataacttttt taaataaaat tgcacttaac
     3601 taaatatatt gttttatctt tggcggaaat taattaaaaa atcgtttttt gtgaggcaac
     3661 taacttg
//
LOCUS       DATDNM010000558         2324 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1352815, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000558 DATDNM010000000
VERSION     DATDNM010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1352815"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..719)
                     /locus_tag="VI413_09470"
     CDS             complement(93..719)
                     /locus_tag="VI413_09470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEY6914892.1"
                     /translation="MNLIDKLNWRYATKRMNGTKVPQDKVDKILEAIRLAPTSFGLQG
                     FKVIVIEDEALREQIFNKACQQPQIKEASHVLVFAANRKISQEQVDEYMQLIATTRGI
                     SVTDLSGFRAAFDGVVAGTAEQNFVWTARQAYIAFGVGIAAAALEEVDATPMEGFSAD
                     ALNEILGLSEQNLGAVTILTLGYRDETNDHLANAPKVRKSKENLFVLN"
     gene            complement(810..1382)
                     /locus_tag="VI413_09475"
     CDS             complement(810..1382)
                     /locus_tag="VI413_09475"
                     /inference="COORDINATES: protein motif:HMM:NF027619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY6914893.1"
                     /translation="MRIKDEDKVNRIYRAAIKVVNSDGFQGSSMSKIAKEADVSAATI
                     YLYFDNKDDMIKKLFIHLKSKMGHSYFNENNDLSPSKGTFRTIWMNHYQFIMENMEDY
                     SFLENFSNCPLIERVEKEQKLDYCPTFELLFEKSKQGGLILNLNNDLIFSLLFSPINY
                     LVKKYRSIGKSLSTNELIEVFDASWRAICK"
     gene            complement(1549..2274)
                     /locus_tag="VI413_09480"
     CDS             complement(1549..2274)
                     /locus_tag="VI413_09480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY6914894.1"
                     /translation="MKSMKSVLFSFYQWLVVFPLLLIITIMVALSTIILSPLLPNSQL
                     SYNPARLWARICCKLCFVRVIIMGLEKLNPRQSYVFALNHQSIFDIFVVYGWFPFIFK
                     WMMKAELRKIPLVGKACESAGHIFIDRSNPIAAKRSLLKAEAQLINGVSLVVFPEGTR
                     TYTGKMGQFKRGAFRISTDLSLPIVPVTLRGSFERLQRNSCNIKPGTIKVYVHMPIDV
                     SSYLPDRTNELIQKTWDDINSAL"
BASE COUNT          783 a          442 c          358 g          741 t
ORIGIN      
        1 taattaaaag cggtcaaatt gttccatttc aaattcaacc gctcagtttt atataaaaat
       61 gccggtgatc cgacggagat tcaaataaag aatcagttaa ggacaaaaag attttccttg
      121 cttttacgta ctttaggtgc atttgccaag tgatcatttg tttcgtcacg ataaccaagt
      181 gtaagtatag tcactgcacc caggttttgt tcacttaaac caagaatttc attcaatgca
      241 tcagcactaa aaccttccat cggtgtagca tcaacctctt ctaacgctgc tgcagcaatc
      301 cctactccaa atgctatata tgcctgacga gctgtccaaa caaagttttg ttcagcagta
      361 cctgcaacta caccatcaaa tgcagcccta aaaccgctaa ggtcagttac agaaattcct
      421 ctggtcgttg caataagttg catatattca tcaacctgct cctgacttat ttttctattt
      481 gcagcaaaaa caagtacgtg ggaagcctct tttatctgtg gttgctgaca tgctttattg
      541 aaaatttgct cacgcaacgc ttcatcttca attacaataa ccttaaaccc ttgcagacca
      601 aatgaagttg gagctaaacg aatagcctcc agtattttat ctactttatc ttgtggaacc
      661 ttagttccgt tcattctttt agtagcatat cgccagttta gtttgtctat taaattcata
      721 atatgtttgt ttttgttagt ttttcattta caagttataa acacttataa atgaatgatt
      781 gttcatttta gaataattat tttataattt catttacata ttgctcgcca agacgcgtca
      841 aacacttcaa ttagttcatt ggttgaaaga gatttcccta ttgatctata cttttttacc
      901 aaataattta ttggggaaaa taataagcta aagattaagt cattattaag attcagaatt
      961 aatccaccct gcttggattt ctcgaagagc aattcaaaag taggacaata atcaagcttc
     1021 tgttctttct caacacgctc tattaatgga caatttgaaa aattttccaa aaagctataa
     1081 tcctccatat tttccataat aaactgataa tgattcatcc atattgttct aaaagttcct
     1141 ttagaaggtg ataaatcatt attttcattg aaataagaat gtcccatctt agatttcaaa
     1201 tgaataaaaa gctttttaat catatcatct ttattgtcaa aataaagata tatagttgct
     1261 gctgaaacat cagcttcttt ggctattttc gacatagaac taccctgaaa gccatcgctg
     1321 tttacaactt taatagccgc cctgtaaatt ctgtttactt tatcttcgtc tttaattctc
     1381 atggtgcaaa tataaatgaa caatcgttta tttaatgcat aattcatgtt aaattaaaca
     1441 tataaaaaaa caatcaacct atagcactta tctatatggc agataaaaac aagctaaaca
     1501 gactattaac aacaggagat ggagaaatga aaagaacttt tgatttaatc agagggcaga
     1561 atttatgtca tcccaggttt tctggatcaa ctcatttgtt ctatccggaa ggtatgaaga
     1621 tacatcgata ggcatatgca cgtaaacttt aatagttcct ggtttaatgt tgcaagaatt
     1681 acgctgcaaa cgttcgaagc taccacgcaa agtcacagga acaatgggaa gagataaatc
     1741 agttgatata cgaaaagccc cacgcttaaa ttgccccatt ttgccggtat aagtccgagt
     1801 gccttcagga aatacaacta aagacactcc attaattaat tgggcttcgg cttttaggag
     1861 gctgcgttta gctgcaattg gatttgaccg gtcaataaaa atgtgtcctg ccgattcgca
     1921 ggcctttcct actaacggaa tctttcgaag ttctgccttc atcatccatt taaatataaa
     1981 aggaaaccaa ccgtacacta caaaaatatc aaaaatactc tgatgattaa gtgcaaaaac
     2041 gtaggattga cgagggttca atttttccaa acccattatt ataactctta cgaagcatag
     2101 tttacaacag attcttgccc acaaacgtgc aggattataa gaaagttgac tattaggcaa
     2161 tagaggagaa agtatgattg tcgataatgc aaccataata gttattatca aaagtaacgg
     2221 aaaaacaact aaccattgat aaaatgaaaa aagtacagac ttcattgact tcataagcac
     2281 tactcatata taaatgattt cggtatctaa tctggccaaa tagc
//
LOCUS       DATDNM010000559         2288 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1673970, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000559 DATDNM010000000
VERSION     DATDNM010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2288
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1673970"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..347
                     /locus_tag="VI413_09485"
     CDS             <1..347
                     /locus_tag="VI413_09485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEY6914895.1"
                     /translation="LYDGIFSYALIHLLSKKERIKLIDDCYNQLAPNGYMVFVSISKM
                     DFIYGQGKEISKDTFETWPGVTLFFYDSDSIKSEFGNYGLIDAEVINEPLKDLGDKPS
                     QRFWYIICKKEN"
     gene            441..743
                     /locus_tag="VI413_09490"
     CDS             441..743
                     /locus_tag="VI413_09490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005928663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914896.1"
                     /translation="MFPIMIVGIFAVSGVVMLLWNWIIPGISSFSAITYWQAMGLLIL
                     CRILFGGCHFARHHHRHRSPFASEANKSRFMEMNDEERQQFKNQWKQRCCKPTKED"
     gene            872..1201
                     /locus_tag="VI413_09495"
     CDS             872..1201
                     /locus_tag="VI413_09495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914897.1"
                     /translation="MTRSILRTVLCGLILGALAFFVPKLLLGLFILGFIIKAIHCCGH
                     GHRRQRVFYMADKIRNMSEEEYAEFKANMGGGCCNNGPHHHGHCCGGFKAEGKECCKS
                     KNEKTTK"
     gene            1225..1461
                     /locus_tag="VI413_09500"
     CDS             1225..1461
                     /locus_tag="VI413_09500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914898.1"
                     /translation="MHRRSRFLVGLATAAITFGCLWFSLGADHFNRGHKLCEREHCCM
                     VEEQHKHCWEEAKEIHADKVIIVKEIVETDSIKK"
     gene            1591..2172
                     /locus_tag="VI413_09505"
     CDS             1591..2172
                     /locus_tag="VI413_09505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEY6914899.1"
                     /translation="MNKSRMEAFSDGVLAIIITIMVLELKIPHGDDWQSLQNLAPKFI
                     SYIISFIYVAIYWNNHHHLIHTVKHVTGSILWANTHLLFWLSLVPFVTAWAGENQFSQ
                     LPVAAYSLVLLMAAVAYYILSKTIVSIHGKESVLSAAIGKDFKGIISVIAYALAVIFA
                     FILKEISLFLILAIAMLWLVPDKRIEKRLKEKE"
BASE COUNT          755 a          401 c          457 g          675 t
ORIGIN      
        1 aattatatga tggaatattc agttatgcct taatccattt attaagcaaa aaagaacgaa
       61 taaaactgat tgatgattgt tataatcaac ttgcacctaa tggatacatg gtttttgtat
      121 caatttcaaa aatggatttt atatatgggc aaggaaaaga aataagcaag gacacatttg
      181 aaacctggcc tggcgttact ttattctttt acgattcaga ttcaattaaa tcggaatttg
      241 gcaactatgg cttgattgat gctgaagtaa ttaatgaacc attaaaggat ttgggcgata
      301 aaccctcaca aagattttgg tatataatat gcaaaaaaga aaattgataa aaatgccagc
      361 gtagtttaga gtcggtagta aaaaaaatat aagatatgaa tacaacaaaa cgacattttt
      421 gcagaacaag gttttgcttt atgtttccga taatgattgt tgggattttt gcagtaagcg
      481 gtgtggttat gctcctctgg aactggataa ttccgggaat atcatctttt tcggccatca
      541 cgtattggca agctatgggg ttacttatat tgtgccggat actttttgga ggatgccatt
      601 ttgccaggca tcaccacagg caccggtcac catttgccag cgaagcaaat aaaagccggt
      661 ttatggagat gaatgacgaa gaacgccagc aattcaagaa ccaatggaaa caacggtgtt
      721 gcaaacccac caaagaagat taaagaaagt ccgtcggaaa cgatggactt tcttttttac
      781 aaatttcaga ttgatttaaa gtaaaaacaa tagttgttcg tcctacaagg tataagagaa
      841 taatcaaact gaaattttta aaataaacaa catgacaaga tcaattttaa gaaccgttct
      901 atgcggttta attctgggag cgttggcatt ctttgtgcca aaattactac tcggactctt
      961 tattttaggc ttcatcataa aagccataca ttgctgtgga cacggtcaca gacgtcaacg
     1021 cgtgttctat atggctgaca aaatccgcaa tatgagcgaa gaagaatatg ccgaattcaa
     1081 ggctaacatg ggcggtggtt gttgcaacaa cggaccccat catcacgggc attgctgtgg
     1141 tgggtttaaa gcagaaggca aagagtgctg caaatcaaag aatgaaaaaa caaccaaata
     1201 actaatcctt taaaaacgaa taaaatgcat agaagatcaa gatttttagt aggattggcc
     1261 actgccgcca ttacattcgg ttgtttatgg ttcagcctgg gtgcagacca tttcaaccgt
     1321 ggacataaat tatgtgaacg tgaacattgc tgcatggtgg aagagcagca caaacattgc
     1381 tgggaagaag ccaaagaaat acacgccgac aaagtgatta tagtcaaaga aattgtggaa
     1441 acggattcga taaagaaata attccgttga gcattgaaat tacaaaccct tttgttccca
     1501 atcagtggaa caaaagggtt tgttgttttg attgataaac aattacaaca agaaatctgt
     1561 taatcaatgt atatccaaaa agaaaaacag atgaataaaa gcagaatgga agcctttagt
     1621 gatggagtat tagccattat tatcaccatc atggtgttgg aacttaagat tccacatgga
     1681 gatgactggc aatcactcca aaatctggca ccaaaattta tcagctacat aataagtttt
     1741 atttatgtcg cgatttactg gaacaatcat caccacttga ttcatactgt aaaacacgtt
     1801 accggatcaa ttctttgggc aaatactcat ttgttgtttt ggctgtcgct agtaccattt
     1861 gtaactgcat gggccggtga aaatcaattc tcgcaactgc ccgttgcagc atattcattg
     1921 gtacttttga tggcagccgt tgcgtattat attctttcta aaacaatcgt ttctatccat
     1981 ggaaaagaat cggttctgtc ggctgccata ggtaaggatt tcaaaggaat catttctgta
     2041 attgcgtatg cactggctgt tatattcgct ttcattctga aggagatttc cttgtttctt
     2101 attctggcaa ttgccatgct ctggctggta cctgacaagc gtattgaaaa gagacttaag
     2161 gagaaagagt aacttacctc ctacccgatt taagtttcct gcacttgtgt tcctatacgt
     2221 cctcaataag ggataatgaa aagcttgatt gttttccttt ttaccctcca attcttcaaa
     2281 taaatcat
//
LOCUS       DATDNM010000560         4204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1032738, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000560 DATDNM010000000
VERSION     DATDNM010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4204
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1032738"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            330..1349
                     /locus_tag="VI413_09510"
     CDS             330..1349
                     /locus_tag="VI413_09510"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEY6914900.1"
                     /translation="MKKVFIGIDFSKLKFDAAIYSVETKTIVSTEVFENDKAGYVGFV
                     QWVKANTRCQKSGLLFCGEHTGYYSSNLSIFLYESGYDLWLVSGLEMKLSQGIKRNKT
                     DRVDACKIAEYAFRYQDKVHLYQPVSKSLDEIRELLSYRERLVETRKVLTTSAQEMKR
                     VKDNASCDYIYQESLEYIRTINASVRDCEKRIEALLKKDISLNNNYKLVSSVVGIGLV
                     NAALILVATANFSLFDSPRKFGCYCGVVPFEHSSGTSVRGKKRVSSMANRHLKTKLTL
                     AAQNAVRFDPELRDYYQRKRSEGKNNWLVLNNVKNKLIHRTFAVVRDGQMYEKQYVHP
                     LKQVA"
     gene            2777..3760
                     /locus_tag="VI413_09515"
     CDS             2777..3760
                     /locus_tag="VI413_09515"
                     /inference="COORDINATES: protein motif:HMM:NF013155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914901.1"
                     /translation="MNEIYQKLKSYNKIDLHIHLNGLFDTDLIQKILISEGTVIPTNF
                     NPEYDLNILNYKRNLERYLRPWEVLRLMPCKYENLVLLIDNAFKKLSDDNVQVVELRS
                     SIVYLSLLQNMNLEDTLIMLISALNEASNKYKIKYGLIMTISRGEYCFVHFNSLISAF
                     NSIGKPSEIIGLDLAGNENYVISKELCKSFRSAKDQYGFMLTVHAGETGSVDNIREAI
                     NEFHADRIGHGTAAGKCQKTMELLSKKDICVEVCPISNRRTGAVKASEAHPVKRFIQN
                     NVPFVICSDNPSIHKTTLTDDYYDFYKETNELIILDEMLNKQIKYSFIKKK"
     gene            3760..>4204
                     /locus_tag="VI413_09520"
     CDS             3760..>4204
                     /locus_tag="VI413_09520"
                     /inference="COORDINATES: protein motif:HMM:NF013854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009143 - nucleoside triphosphate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase"
                     /protein_id="HEY6914902.1"
                     /translation="MDIRLATGNSYKVEETMEILKGCKINIIPYDLKIEELQTLDVHK
                     LVRDKLLKAFSKIGRPLIVEHTGLYIKYLNDFPGGLTQIFWDSLQADKFAEIVGNLKD
                     TTAMAKTVIGFCDGEQIYFFEGEVEGKISNNPLGSRDFQWDCVFIP"
BASE COUNT         1468 a          640 c          832 g         1264 t
ORIGIN      
        1 aataaccaat aattaactta tcttaatcga caaaacagag agtatcattt aaacaaacac
       61 cgatgcccta acacacgctc ttaggtttgc attgaaaaaa ggattttgag aggcggggtt
      121 aatttctcta cttttgttgt aaaaaagcga ggaattaacc ggctgaaagg gtaaactagt
      181 aacacacgtg aatataattc accataggta taagaccctg acagtctggc tgaaagacac
      241 caaatagaat tctggtattt gtgagaccaa taagagtgtt agtgcataca gctatcggtt
      301 aattccaagc ctaaaggaag tacaaaagta tgaaaaaggt ttttattgga attgatttct
      361 cgaaattaaa atttgatgca gctatttaca gtgttgaaac aaagacgatt gtatcaaccg
      421 aagtgtttga aaatgacaag gctggttatg ttggttttgt tcaatgggta aaagccaata
      481 cccgttgtca gaagtcaggg ctgttgtttt gtggtgaaca tacagggtat tattctagta
      541 acttatccat atttttatac gaatcggggt atgatttgtg gttagtttcg gggcttgaga
      601 tgaagcttag ccagggaatt aaacgcaaca aaacggatcg tgtagatgct tgtaaaatag
      661 ctgaatatgc ttttcgttat caggataaag ttcatctgta tcagccagtt tcaaagtcat
      721 tggatgagat ccgggaattg ctttcgtacc gcgaacggct agtggaaacg cgtaaggtat
      781 tgactacctc ggctcaggag atgaaacggg taaaggataa tgccagttgc gattatattt
      841 accaggagag cctggagtat atccgcacaa tcaatgctag tgtacgtgat tgcgagaaac
      901 gcatagaagc attactaaag aaagatatat cactgaataa caactacaaa ctagtgagtt
      961 cagtagttgg tatcggcttg gtaaatgccg ctttgattct ggtggccaca gcaaatttta
     1021 gcttatttga tagtcctcgc aagtttggct gttattgcgg tgtagtgcct tttgaacata
     1081 gttcgggcac cagtgtacgt ggtaaaaaac gtgtaagctc aatggctaac cggcatttaa
     1141 aaactaaact aacgttagcg gcacagaatg cggttcgttt tgatccggag ctgagagatt
     1201 actatcaacg caaacggagt gaaggaaaaa ataattggct ggtgctaaat aatgtaaaga
     1261 ataaattgat acacaggaca tttgcagtag ttcgtgatgg gcagatgtat gaaaaacagt
     1321 acgtacatcc gttgaaacaa gtagcctgaa caatatattt ttctttgttt ccgattttgt
     1381 aaacctacaa gaaatgaaga aaataacgtg agcaagattg actgaaaaaa tacaaccgaa
     1441 cgccagtgag tgtggagatt ttttcggtca ccgataggct tgatcttgag catgttgttt
     1501 tcggaattta gctttgtgca caaaaacaga aataaagaaa ggacgcaaac taatttttaa
     1561 tacaaataat ttggaataac catagaattc ctatgttcat tggctggctg acgtgcattc
     1621 cggcagtttt gctcccgcat tcactttgtc gttccacgac agcgaacgct cccgcaaacc
     1681 gccaatgccc atagcctcgg tcgttatgcg gcatagtaaa aaatgaaaaa atacagactt
     1741 tgcggttgaa aaatctttga cgaactgtcc gcttttgcga cataacaaga cgaatctgta
     1801 acgacagaat ttgctgactt tcggactttt gctttgcgga caattcctct cagattttct
     1861 atggaaagaa tttgacttgt atcatttaga ctgtgacgaa caacgactga aatttgtgaa
     1921 attgtgattt tacgtctgaa aaacaaattc tgacttttag acttttcacg ctttcgggcg
     1981 gaaatcggtt ttcgtcggtc gaaaagaaaa cttgacgaaa aaatagactt tgctcgttag
     2041 ctggctgaaa gtacatttcg acagcgacaa aaagaaagaa ttaaaacaga aatattgaca
     2101 acttaattta ataatatgac gacacttttt ttatctatcg gtattttcga aatacttttt
     2161 cttttattga ttctactttt tcctattttg gctttaatag atattctgaa aagcaaattt
     2221 gatgggtata ataaattgat ttgggtgctt gttgtagttt tcacaaacgc aatcggtgcg
     2281 attctatatt ttcttattgg gaaaaatcaa aagattcagg aataatttaa gttagattgg
     2341 actttgttca tgggttgaca aaatatgcat tcgacaagct aatggaacgt gagtggcgaa
     2401 agaaagctct ttaatcggct gaaattagaa cgactgaaaa gaccaaacta cgaccgcata
     2461 acacacgtct atgtgcattg gctggctgac gtgcattccg gcggttttgc tcccgcattc
     2521 actttgtcgt tccacgacag cgaacgctca cgcaaaccgc caaatgccca tagcctcggt
     2581 cgttagcggt aatccaaaaa atgaaaaaat tcattgacta acgttgctaa cgaccaaaaa
     2641 agtgactatt gaagatcaaa gacttacgtt gtcgttagtc agaatttaaa aaaaatagga
     2701 tgacgcagct cataaaaaca gagaatttac tatttcaaga aagaatgctt gagattttga
     2761 aattaaaaac gaaagtatga acgaaatata tcagaaatta aaatcatata ataaaattga
     2821 tcttcatatt catttaaacg gtttatttga cactgattta attcaaaaaa ttctcattag
     2881 tgaaggaaca gttataccaa ctaactttaa tccagaatac gaccttaata tattgaatta
     2941 taagcggaat ttagaaagat atttacgtcc atgggaagta ttaagattaa tgccttgtaa
     3001 atatgaaaac cttgttcttt taattgataa tgcatttaaa aaattaagcg atgataatgt
     3061 tcaagttgta gaattgagaa gtagtatagt ctatttatct cttttacaaa atatgaattt
     3121 agaggatacg cttataatgc tcatatctgc attaaatgaa gcttctaata aatataagat
     3181 aaaatatgga ttaataatga ctatatcgcg aggtgaatat tgttttgtac attttaacag
     3241 tttgatttct gcatttaatt caattggaaa accaagtgaa ataattggac ttgatttagc
     3301 tggcaatgaa aattatgtta tttcaaaaga attgtgtaaa tcatttagat cagcaaaaga
     3361 ccaatatggt tttatgttga ctgtacatgc aggcgaaact ggaagtgttg ataatattcg
     3421 tgaagcaata aatgaatttc atgcagatag aattggtcat ggtacagcag ctggaaaatg
     3481 tcaaaaaacg atggaacttc tttcaaaaaa agatatttgt gttgaagttt gcccaattag
     3541 taatagaaga actggagcag taaaagcaag tgaagctcat ccagttaaac gattcattca
     3601 gaataatgta ccatttgtta tatgttcgga taatccaagt attcataaaa caactttaac
     3661 tgatgattat tatgactttt acaaggaaac aaatgaatta attatattag acgagatgct
     3721 taataaacaa attaaatact catttataaa gaaaaaataa tggatatacg cttagcaact
     3781 gggaattcgt ataaagttga agaaacaatg gaaatattaa aaggttgtaa gatcaatatt
     3841 ataccttatg atttaaaaat tgaagaacta caaactttag atgtacacaa attagtccga
     3901 gacaaattat taaaagcctt ttcaaagata ggcagacctt taattgtcga acatacagga
     3961 ttgtatataa aatatctaaa tgactttcca ggtggtttga ctcagatatt ctgggatagc
     4021 cttcaagcgg ataaatttgc agaaattgtc ggaaatttaa aagacacaac tgcaatggca
     4081 aagacagtaa taggattttg tgatggtgaa caaatttact tctttgaagg agaagttgaa
     4141 ggaaaaatat caaataatcc attaggtagt agagactttc agtgggattg tgtatttatc
     4201 ccaa
//
LOCUS       DATDNM010000561         2176 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1247668, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000561 DATDNM010000000
VERSION     DATDNM010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1247668"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(11..1921)
                     /locus_tag="VI413_09525"
     CDS             complement(11..1921)
                     /locus_tag="VI413_09525"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HEY6914903.1"
                     /translation="MNKIKITLGLLLLSILGFASNDRLELKISNIPDSLKKNAYAVVR
                     FSNTEFDYKSETNGLERTEISISILNKKGSEFSAFRCPCDKFRELKSFTGKLFDAEGR
                     LLRKFKMSDVSSTEYSQQLATDAKLYYFDCDLPTYPVTITYEYEVAWKNGILVFPAFY
                     PQYAHNISVEKASYKLFLPDNMEYRSKAVNITPNPQKTTLKGITCYEWEVKTLNAIES
                     ENFDPDLDTFVPLLYLSPSKFVYDGVPGVITNWNSMGKWEHGLLNGRDILSDNTKNQI
                     IEMTKNVSSDREKVQIIYDYLGKTTRYVSIQLGIGGYQPMPAAEVCKTGFGDCKALSN
                     YMKSMLSAIGIPSYYTGIRMDKKDKTLYGDYANFNQMNHVILQVPLHKDTLWLECTNP
                     RVPFGFIHNGISGHDALVDYEQGGKIVKLPDYPDSLNIEKNCTNVILNEDGSATVNMN
                     KKCQLKIYDNYDWFPLAKSNEQADNLREDIKLPSVSMGAIQVKENKSAFPNLNIDYTW
                     STPLYGTKTGNRLFVPVNPYRDMYEGLKKTKRIHDISISAGYKDIDSISITIPTGYEI
                     ESMPASTKIKTLFGNFESILHANSQKIYIRHSLFIPSGEYNVSAYPDFVSFFEKISSN
                     YKSKIILRKRTT"
     gene            complement(1994..>2176)
                     /locus_tag="VI413_09530"
     CDS             complement(1994..>2176)
                     /locus_tag="VI413_09530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914904.1"
                     /translation="IPTNYKVEEIPKSVKITLAENAGRCLYQITQVNNTIQLNYRFDL
                     AQTIFPQTEYNAIRDF"
BASE COUNT          648 a          376 c          373 g          779 t
ORIGIN      
        1 aacttcttga ctaggttgta cgtttgcgaa gtataatttt agatttgtaa tttgaactta
       61 ttttttcaaa gaaagataca aaatcagggt aagcagagac attgtattcg cctgaaggta
      121 taaaaagtga atgtctgata tatatctttt gagaatttgc atgtaatatg gattcaaaat
      181 tcccaaataa agtttttatc ttggttgatg caggcatact ttcaatttca tatccggttg
      241 gaattgtgat agaaatgctg tcaatgtctt tgtaaccagc agaaatacta atatcatgaa
      301 ttcgttttgt cttttttaac ccctcataca tatctctgta gggattgacc ggaacaaaca
      361 gtcgatttcc tgttttagtt ccatagagtg gagtagacca tgtgtaatct atattgaggt
      421 tgggaaaggc cgatttgttt tcttttacct gtattgctcc catgctgaca cttggcaact
      481 ttatatcttc acggaggttg tcggcttgct cattgctttt ggcaagtgga aaccaatcat
      541 aattatcata gatctttaac tgacatttct tattcatgtt tactgttgcg ctcccatctt
      601 cattcagaat tacattcgta cagtttttct caatattgag ggaatcagga taatccggga
      661 gttttactat tttaccaccc tgttcataat ctaccaacgc atcatgtccg gatattccat
      721 tgtgtataaa accaaaaggt actcttgggt tggtacattc gagccataga gtgtctttgt
      781 gtaatggaac ttgtaagatg acatgattca tttgattaaa attagcgtaa tccccgtaaa
      841 gggttttatc tttcttgtcc attctaatgc ctgtgtaata agaaggtatt ccaatggctg
      901 ataacattga cttcatatag tttgacaacg ctttgcaatc tccaaagccg gttttgcaaa
      961 cctcagccgc aggcataggc tgataaccgc caataccaag ttgaatgctg acatagcggg
     1021 ttgttttccc aagataatca tatataattt ggactttttc acgatcagat gaaacatttt
     1081 tagtcatttc tattatctgg ttttttgtgt tatcagagag aatgtctcgt ccattaagaa
     1141 gaccatgttc ccatttcccc attgaattcc agttggttat tacaccgggt acaccatcgt
     1201 aaacaaattt cgaagggctt aaataaagca acggcacaaa agtatctaag tccggatcaa
     1261 aattttctga ttcaatagca ttcagagttt ttacttccca ttcatagcat gttatacctt
     1321 ttaaagttgt tttttgagga ttgggtgtta tattaactgc tttgctacgg tattccatat
     1381 tatcaggtaa aaacaattta tagcttgctt tttctactga aatattgtgt gcatattgag
     1441 gatagaaagc tggaaaaact aatataccat ttttccatgc aacttcatat tcgtatgtaa
     1501 ttgtaaccgg ataagtaggc aaatcgcaat caaaataata aagtttagca tctgttgcca
     1561 attgttgcga gtattcagtg ctgctaacat ctgacatttt aaatttacgg agaagcctac
     1621 cttctgcatc aaacaatttt ccagtgaaac ttttcaactc acggaattta tcgcacggac
     1681 acctgaatgc tgaaaattct gagcccttct tgttgagaat agaaatagaa atttccgttc
     1741 tttctaaccc atttgtttct gatttatagt caaactcagt atttgagaat cgaacaacag
     1801 cgtaggcatt tttttttaat gaatcaggaa tgtttgatat tttcaattca agtctgtcat
     1861 ttgaagcaaa tcctaaaatt gaaagcaaca acaaaccaag agttattttt atcttattca
     1921 tatcagattt tttatacctt taatttactt tctttaatac aattaactca gcatttttta
     1981 tagctacctg tgcttaaaaa tcgcgaatag cattgtactc cgtttgagga aaaatagttt
     2041 gtgccagatc aaatctataa tttaattgta tggtattatt aacttgagtt atttgataga
     2101 ggcatctacc agcattctca gctaatgtaa tttttacaga tttgggaatt tcttctacct
     2161 tgtaatttgt tggaat
//
LOCUS       DATDNM010000562         3816 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_926185, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000562 DATDNM010000000
VERSION     DATDNM010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3816
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_926185"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2009)
                     /locus_tag="VI413_09535"
     CDS             complement(<1..2009)
                     /locus_tag="VI413_09535"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HEY6914905.1"
                     /translation="MLAGISISSGAFSQDVTSGLILHYNFDAISGTTVPDISGNSNAG
                     TLMGAAKDTTGYSNNGVKMAIKADYVALPSGFTSTLTSFTFTTWVKLDALKNATRFFD
                     LGIGADATNNFLAFIPSYNGDNGFMCMRYRPATGTAYNVVSTTKCPTGVWAHIAVTYD
                     WNGTSGTATMYLNGAVVGSATALPYNPSLSLGATSNNMLGVSRWGQDPNGFGGIMDDV
                     RFYNRALSSTDILTLNGLAELNNQYSSLTLGDISGVTSNLTLPTTLGTNGVKVKWATT
                     NAALIDTLGTVIRPEVYDATAKLTATLSQVVGDKTYSMTKVFTVKVLGLVGTPVKVAE
                     WDFTTSNIALSNDTTTVKDIQTGFVGKLVNEARIRTIGSTTQYNVLDLGNGTGYFDMG
                     KEIGKAIYSLSDYTMMGYFRIDADYPSINTNGNFYWTFSNTAAAMTDQTGYIIGSLKA
                     MSQSVSTNYYATGNQAVGANVNAALGGWHHFAYSQNGNTGTVYIDGAVVATGAITNLP
                     STSINMAGRTGTIYNWLGRSNYTSDVYLRKTQLYDFQVLSIPVASDDLNLGFDGFNPV
                     QTTIDALNAAYAENPDYTAPELATERDNLSLGDLSAVKTNITLPKQGTLDPAILISWK
                     TTNSKLIDANGVVTRPNYYNYNDTLTATLTKNGQTLTKVFPATVV"
     gene            2731..>3816
                     /locus_tag="VI413_09540"
     CDS             2731..>3816
                     /locus_tag="VI413_09540"
                     /inference="COORDINATES: protein motif:HMM:NF023218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY6914906.1"
                     /translation="MIKNYFLFLIAFLGLASYAYSQNPRTTITITDKSLSVASYTDKE
                     VVMNSQTDLHLTAAATVAKTVLSNSVIKLNSVNSWVFFDNIRPQFVIDSLLQYIYVNN
                     QAAVLKTNVRVSIYKHGAVVIPQASTFQPLKVYTGQNFTGDSASYSMFTFYNSLGTKD
                     NKIRSFKLKRGYMVTLATTSDGTGYSRVYIADDKDLEISVMPNLLDNSISFIRVLDWE
                     WVSKKGWCGYNPNDLNLTKATWRYDWSASGSTTSTVEYVPIRQNGGWPGWSEINGKQY
                     VSHVLAFNEPDHTEQSNLTVAQAVAQWPDMLRTGLRVGSPACTNFSWLYQFMDSCKAH
                     NYRVDYVAVHAYWGGTSPANWYNDLKYI"
BASE COUNT         1149 a          716 c          726 g         1225 t
ORIGIN      
        1 aatactacgg ttgcagggaa taccttagtc aaggtttgtc cgttttttgt caaagttgca
       61 gtcagcgtgt cattgtaatt ataatagttt ggacgagtta caacaccatt agcatcaatc
      121 aacttagaat ttgtcgtttt ccatgaaata agaatcgcag gatctaaagt gccttgtttt
      181 ggtaaagtga tgtttgtttt aacagcagat aaatctccca acgaaagatt gtctctttca
      241 gttgccagtt caggagcagt ataatccgga ttttcagcat aggcagcatt taaagcatca
      301 atagttgttt gtacaggatt gaatccgtca aaaccaaggt tcaagtcgtc tgaagcaaca
      361 ggaatactta aaacctggaa gtcataaagt tgagttttac gaaggtaaac atcgctggtg
      421 taatttgaac gtccaagcca gttgtaaata gttcctgttc tgcctgccat attaatagaa
      481 gttgaaggca ggttagttat cgcgcctgta gcaactacag cgccatcaat ataaactgta
      541 cccgtattac cgttttgtga gtaagcaaaa tgatgccagc cacccaatgc tgcatttaca
      601 ttggcaccta cagcctggtt gcctgttgca taatagttgg tagaaacact ttggctcata
      661 gcttttaaac ttccgataat atacccagtc tggtctgtca ttgctgcagc agtgttcgag
      721 aatgtccagt agaagttacc attagtgtta atggatggat aatccgcatc tatgcggaaa
      781 taccccatca tggtataatc gctcaaagag taaattgctt taccaatttc ttttcccatg
      841 tcgaaatagc cggtgccatt gcccaggtca agtacgttgt attgagttgt tgaaccaatt
      901 gtccggatac gtgcttcatt taccagcttg cctacaaagc ctgtttgaat atcttttacg
      961 gttgtcgtgt cattactcaa tgcaatatta cttgttgtaa aatcccattc tgcaactttt
     1021 actggtgttc ctactaatcc taaaactttt accgtgaaaa ctttagtcat tgaatatgtt
     1081 ttgtcaccta caacttgcga tagagttgca gtcagcttag ctgttgcatc atatacttca
     1141 ggtcgtatta cagtacctaa agtgtcaatc aatgccgcat ttgtagttgc ccatttcact
     1201 tttactccgt ttgttcccaa tgtagttggt aatgtcagat tggaagtaac gccggaaatg
     1261 tcacccaatg ttagagagga atattgattg ttcaactcag ccaaaccatt cagggttaaa
     1321 atatcggttg atgaaagtgc tctgttgtag aagcgaacat catccataat tccaccaaag
     1381 ccatttggat cctgacccca gcgtgaaact ccgagcatat tattcgatgt agctcctaat
     1441 gaaaggcttg gattgtatgg taatgcggtg gctgaaccta ctacagcacc gttcaggtac
     1501 atagttgctg ttccggaggt gccgttccag tcataagtta cagcaatgtg agcccaaact
     1561 ccggtaggac atttggttgt tgaaactaca ttgtaagctg tacctgtggc cggtctgtat
     1621 cgcatgcaca taaatccgtt gtcaccgtta tagcttggta taaatgccaa aaagttattt
     1681 gtagcatcgg cacctatccc taaatcgaag aaacgggttg cgttcttaag ggcatctagt
     1741 tttacccaag tggtaaacgt aaatgatgta agtgtagatg taaatcctga aggcaatgca
     1801 acataatcag cttttattgc catttttaca ccgttgttac tgtagccggt tgtatcttta
     1861 gcagcaccca ttaatgttcc tgcattgctg ttgcccgaaa tatcaggcac agttgttccg
     1921 gatattgcat caaagttata atgcagtatt aacccagagg tgacatcctg cgagaaggca
     1981 cctgaagaaa ttgagattcc cgccaacaat aggcaaagtc tacttaatct cttaaattga
     2041 aaaaagtaat ttttcttttt catgataaat aataattatt gttgttagtt gttttgtgtc
     2101 agtttctcca gttcaatgaa ttcttgttgc aagaataaat aaactaattc cggatgatat
     2161 attctttcga aagcaaatgt acaactaaga acttttgctt atgggtaaaa aaaagtcaaa
     2221 aatggaaaca gaataaattc tgtcattttt ttattttaaa ttcaatacaa gtcattttcg
     2281 ttttttttat tgggagttga gagctaaatg gaacacctga taaataaaat agattttttc
     2341 tctgaaaaaa gaatttttgt tttatagttg aattttagaa acaaaaaata ctgatacacg
     2401 tcctacttat tattttcatt actatatttt attaacaact tatcttgact tttttagttc
     2461 tcaatacctt tactgttctg atttttgatc taatactcct ctcacagaaa gtttaaattt
     2521 cttgaatgct attccaattg attatattat cttgatttga tatataatac ttaactttct
     2581 ggtataaaac ttatagataa acacaaaaag catattctac atatttgaat ggattttaca
     2641 cccatgttta aagtttgcgg cctacatttg cacaataaaa aaaatatcgt tttccagaag
     2701 accacaacct taaataaaaa taactataca atgattaaaa attacttttt atttttgatt
     2761 gcctttttag gcttagcgtc gtacgcttat tcacaaaatc caagaaccac tattacaata
     2821 acagacaaaa gtttatcggt agcttcttat acagacaaag aagtggtgat gaatagtcag
     2881 accgatttac acctgactgc tgcagccaca gtagcaaaaa ctgttttaag caatagtgtc
     2941 attaaattaa actccgttaa ctcttgggtg tttttcgata atatccgtcc gcagtttgtt
     3001 attgattcgc ttttacaata tatatatgta aacaaccagg ctgctgttct gaaaacaaat
     3061 gttcgtgttt ctatctacaa acatggggca gttgttattc cgcaagcttc cacattccaa
     3121 ccattaaaag tttataccgg acagaatttt actggtgact ctgcctcata ttccatgttc
     3181 acattttaca attcattggg aacaaaggat aataaaatcc gatcgttcaa attgaaaaga
     3241 ggatatatgg ttaccctggc aacaacttcc gatggtacgg gatacagtcg cgtttatatt
     3301 gcagatgata aagatctgga aatatctgta atgccgaact tacttgataa ttccatttca
     3361 ttcattcggg ttctcgactg ggagtgggtt agcaaaaaag gttggtgcgg atataatcca
     3421 aatgacctga acttaaccaa ggcaacatgg agatatgatt ggagtgcaag tggctctaca
     3481 acctcaacgg ttgaatatgt gccaatacgt caaaatggcg gttggcccgg ctggtctgaa
     3541 attaatggaa agcaatatgt ttcacacgta ttggccttca atgaaccaga ccataccgag
     3601 cagtcgaatt tgactgtggc tcaggctgtg gctcaatggc ctgatatgtt gcgaaccgga
     3661 ttgagagtag gttctccggc ctgtacgaat ttctcatggt tatatcagtt tatggatagt
     3721 tgtaaagcac acaactatcg cgtggattac gtggcggtgc atgcttactg gggtggcaca
     3781 tcaccggcta actggtataa tgatttgaaa tacata
//
LOCUS       DATDNM010000563         2293 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1674231, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000563 DATDNM010000000
VERSION     DATDNM010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1674231"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            12..176
                     /locus_tag="VI413_09545"
     CDS             12..176
                     /locus_tag="VI413_09545"
                     /inference="COORDINATES: protein motif:HMM:NF028441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein-sorting protein"
                     /protein_id="HEY6914907.1"
                     /translation="MTFADIQRIQNRWYPKSFVYKDMLKDGKGTKMIIEEIQMDAVIP
                     ASVFNKGNLK"
     gene            complement(292..1248)
                     /locus_tag="VI413_09550"
     CDS             complement(292..1248)
                     /locus_tag="VI413_09550"
                     /inference="COORDINATES: protein motif:HMM:NF025616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4349 domain-containing protein"
                     /protein_id="HEY6914908.1"
                     /translation="MKKSMLFLLLIALAACGKKEMREEYGPTVMAKLPPARVQDVHYS
                     SEEVVSMADVNGKDIADVEAVETQNTLEPPPALRNRAVTHSVIPVIKKKIIKDGKLGL
                     QVRNLEAAKKQIDSLVKKVGGYYANENLENNDNQSGYNLVIRIPVENFDKFVNSAETG
                     NGKVLYKEISARDVTEEFVDLQTRLTSKRNSLARYNEIMKKANAVKDIVEIEQAIRVL
                     QEEIESSEGRLRYLNDCVNYSTLNLTISTEKDFAYKPAKRDSFWEKFKESVVEGWFGL
                     IDFILGMFNLWPFWLAVVGMYFLIRRWIKRLRAKRKQKNENA"
     gene            complement(1290..1598)
                     /locus_tag="VI413_09555"
                     /pseudo
     CDS             complement(1290..1598)
                     /locus_tag="VI413_09555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008667845.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
     gene            2060..>2293
                     /locus_tag="VI413_09560"
     CDS             2060..>2293
                     /locus_tag="VI413_09560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914909.1"
                     /translation="MKKPSDVSERSADPSANRSETSESVSDPSKLNSGSSECAVDVSS
                     AISESPEIAADRSSAISEGSDGIYFFCFECFSFN"
BASE COUNT          599 a          484 c          447 g          763 t
ORIGIN      
        1 tgctgaaacg aatcacgttt gccgacattc aacggattca gaatcgttgg tatcctaaat
       61 cgtttgtgta taaagacatg ctcaaagatg gcaagggaac caaaatgatt attgaagaga
      121 tacaaatgga tgcggtcatt cccgcttcgg tatttaataa agggaatttg aaataaaaaa
      181 acgcctcgct gttttatcgg gtttcgcgat ttttaattgc gggttttcaa gaaggcgatt
      241 aaaaatcgcg aaacccgaat acagggacag gtcgctgtcc ctacattgta attatgcatt
      301 ctcatttttc tgtttccgtt ttgcccgcag tctttttatc cagcgccgga ttaagaaata
      361 cattcccacc actgccagcc agaatggcca cagattaaac atacccagaa taaaatctat
      421 cagcccgaac cagccttcaa ccaccgattc tttgaacttt tcccagaaac tatcacgttt
      481 ggcgggtttg taggcaaaat ctttttcggt ggaaatggtg aggttcaatg tgctgtaatt
      541 cacacaatcg ttcaggtaac gaagccgccc ttccgagctt tcaatctctt cctgcaacac
      601 gcggatagcc tgctcaattt ccacaatatc tttcaccgca ttggcttttt tcattatctc
      661 gttgtatcgg gccaatgaat tgcgtttgct ggtcaggcgg gtttgcaaat ccacaaattc
      721 ttcggtgacg tcgcgggcag atatttcctt gtaaagcact ttcccatttc ctgtttctgc
      781 agagttcaca aacttatcga aattttccac aggaatccgt attacgaggt tatagcccga
      841 ttggttatcg ttgttttcca ggttttcatt ggcataataa ccgcccacct tttttaccag
      901 gctgtcgatt tgtttcttgg ctgcttccag attacgaacc tgcaaaccca atttaccatc
      961 tttaataatc ttctttttga taaccggaat tacagaatgt gttacagccc tatttctcaa
     1021 agcaggtggc ggttctagtg tattttgagt ttcaacggct tctacgtcgg caatatcttt
     1081 tccattcaca tctgccattg aaacgacttc ttcagatgaa taatggacat cctgaacacg
     1141 ggctggtggc aatttagcca ttacagtagg tccatactct tctctcattt cttttttgcc
     1201 acatgccgcc agggcaataa gcaataaaaa taacattgat tttttcatga ttttgacgga
     1261 ttaaagggtt aatatgagtg aattgcttac tactgcattt taaacttaat gggtaacgta
     1321 taataactag ctacgtttac gccattttgt tttcccggaa tccaacgggg aagcgatgct
     1381 ataactcgta ttgcctcttt gtcgcaagca cggtcaagcg aacgtagaac ctcacttttt
     1441 tcaacttttc cagtgctggt tactacaaaa cgaacgatta ctgtgccctg gacaccattt
     1501 tctttagcaa tggcaggata tttcaactgt tttgatatga attccaacaa tttttcatct
     1561 ccacccggga acactggcat ttgctcaaca acgtcataga catctgtatc ccaattgggt
     1621 tttacatcag gatggtcatc tccggttaca ttatcccaat tctggttgtt tgtttcattt
     1681 tttgtttcat ttttttgcgg ctgcggtttt ttcgactgac aggatgtaaa ggataaaatc
     1741 gtgaaaataa gaagaaaact gatctggatt tttagtttca tggcgttgtt gatttgaggg
     1801 ttttgtaaat ttggatagtc tctataattt attaacgacc agatttctga tatattttaa
     1861 aattgttgaa aacttttttt agaaaacagt tgtgaaatat tgtgagaata aaatatcctc
     1921 catatatttg gcctcgttaa gttaaaggtg tgtgccggta attaccaatc gtatccgtat
     1981 actatctttc tgttcactat actccctgtt cactattacg tttcgggttt gctaatgagc
     2041 aaaccgttgt tttttgttta tgaaaaagcc gtccgacgtt tcggaaaggt ccgctgaccc
     2101 ctcggcgaat cgttccgaaa cttcggaaag tgtttctgac ccctcgaaac taaattccgg
     2161 gagttcggaa tgtgccgttg atgtatcatc ggcaatctcc gaaagcccgg aaattgcggc
     2221 tgataggtca tcagcaatct ccgaaggttc ggatggtatt tatttctttt gtttcgaatg
     2281 tttttctttt aat
//
LOCUS       DATDNM010000564         2306 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_499209, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000564 DATDNM010000000
VERSION     DATDNM010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499209"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..491)
                     /locus_tag="VI413_09565"
     CDS             complement(<1..491)
                     /locus_tag="VI413_09565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEY6914910.1"
                     /translation="MLYHLFQYLEKIVTFPGVRLFNYISFRTGLAFILALLLSTLLGR
                     RIIDYLQKKQIGETIRDLGLEGQMSKKGTPTMGGLIIIIAILVPTLLLASLTNIYVIL
                     MIITTVWLGLIGFLDDYIKVFLKNKEGLSGKFKIVGQVGLGLIVGLTMYLSPSAVIRE
                     NVE"
     gene            complement(538..1986)
                     /locus_tag="VI413_09570"
     CDS             complement(538..1986)
                     /locus_tag="VI413_09570"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEY6914911.1"
                     /translation="MILDDILQNVILQKTIGETEINITDIQFDSRKVVNGSAFVATRG
                     TASDGHQFIQMAIEKGAKAIVCEEIPSEINPDVTYVKVENSSDALGKMASAWYDFPST
                     KLTLVGVTGTNGKTTIATLLYQLFRQLGHKSGLLSTVRNYVNDVAVEATHTTPDALAL
                     NELLKQMVDAGCEYAFMEVSSHSVDQRRIAGLEFDGGIFTNITRDHIDYHLTFENYLK
                     AKKQFFDELPADTFALTNADDKNGLVMLQNSKAKKYTYSLRSMADFKTRILEHSFEGM
                     LLDMNDKEVNVPFIGKFNASNLTAVFGTAVLLGQDEMEVLRIISSLGSVSGRFETLHA
                     PAGYTAIVDYAHTPDALNNVIGTINQILQGNGRLITVVGCGGNRDKGKRPMMAREAVN
                     GSWKAILTSDNPRFEEPQDILNDMLAGLDVVEKAKSLTIVDRREAIRTACALAQAGDV
                     VLVAGKGHEDYQIIQGVKHHFDDKEIVRECFN"
     gene            complement(2018..>2306)
                     /locus_tag="VI413_09575"
     CDS             complement(2018..>2306)
                     /locus_tag="VI413_09575"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEY6914912.1"
                     /translation="KALNNVLTELNMPLQSNPTDWVKTFTEHKQVRIEPASVPGNVVP
                     DMSGMGAKDAVYLAERLGLNVQVNGRGKVISQNLKPGIAVRKGSVIKISLQ"
BASE COUNT          677 a          535 c          393 g          701 t
ORIGIN      
        1 atttcaacat tctcacgaat tacagcactg ggactcaaat acatagtcaa ccctacaatt
       61 aaccccaaac caacctggcc tacgatttta aatttgccac ttaaaccttc tttgtttttc
      121 agaaacactt tgatgtaatc atccaaaaat ccgattaacc caagccaaac agtagttatg
      181 atcattaaaa tcacatagat attggtcagg cttgccaaaa ggagtgttgg taccagaata
      241 gcaataatga taataagtcc gcccatcgtt ggcgttcctt ttttgctcat ttgtccttcc
      301 agacccaaat cgcgaatggt ttcgccaatt tgtttctttt gcaaataatc aattatgcga
      361 cggcccaaca aagttgatag caaaagagcc aaaataaaag ccaaaccggt tctgaacgaa
      421 atgtaattaa acaatcgaac accggggaaa gtgacaattt tttctaagta ttggaataaa
      481 tggtacagca taatcgtgtt gttttagttt tcaatcgtgt tgtttctttg tttcaaatca
      541 attaaagcat tctctgacaa tttctttatc atcgaaatga tgtttaactc cctgaattat
      601 ctggtaatct tcgtggcctt tgcctgccac caaaaccacg tcgccagcct gggctaaagc
      661 acaagcggta cgaatagctt ccctccggtc aacaatagtc aggcttttgg ccttttcaac
      721 cacatcaagg ccggccagca tatcatttaa tatatcctgt ggctcttcaa aacgaggatt
      781 atctgatgtc agaatggctt tccagcttcc gttcacagct tcacgtgcca tcattggacg
      841 tttgcctttg tcgcggttac caccacatcc aaccacggtt atcaatcgtc catttccctg
      901 aagaatctga ttaatcgtgc cgataacgtt attcaacgca tccggtgtat gggcataatc
      961 tacaatcgcc gtgtatcccg caggggcgtg caatgtttcg aatcggcccg aaacagaacc
     1021 caatgaactg ataatacgaa gcacctccat ttcgtcctgc ccgagtaaaa cggcagttcc
     1081 gaaaacagct gtcagattac tggcgttaaa cttaccgata aaaggaacat tcacttcttt
     1141 atcattcata tcaagcaaca taccttcgaa actatgttcc agaatacggg ttttaaagtc
     1201 agccatcgaa cgtagtgaat acgtatattt tttagctttt gaattttgaa gcattaccaa
     1261 cccgttttta tcatctgcgt tggttagtgc aaaagtatca gccggtagtt cgtcaaaaaa
     1321 ttgcttttta gctttcaaat aattctcaaa agtcaggtga taatcaatat gatcacgggt
     1381 tatattggta aatatacctc catcgaattc taaacctgca atgcggcgct ggtcaacaga
     1441 atgcgaactt acctccataa aagcatattc acaaccggca tcaaccattt gtttcaataa
     1501 ctcattcaac gccaatgcat ccggtgtagt atgggttgct tccacagcca catcgttcac
     1561 ataattgcgg actgttgaaa gtaaacccga cttatggcct aactgacgga aaagttgata
     1621 caacaaagtg gcaattgtgg tttttccgtt agttccggta acaccaacca aagtcagttt
     1681 tgttgaaggg aaatcatacc atgctgaagc catttttcca agtgcatccg aactgttttc
     1741 aactttcaca taagttacat ccggatttat ttctgaagga atttcttcgc aaacaatagc
     1801 ttttgctcct ttttcaatag ccatttgaat aaattgatgg ccatcggatg ctgttcctcg
     1861 ggtagcaacg aaagcacttc catttaccac tttacgcgaa tcaaactgaa tgtcggtaat
     1921 attgatttcc gtttctccta tggtcttctg caaaatcaca ttttgcaata tatcatctaa
     1981 tatcatattc gtcaattttt agctgttata aattgattta ctgaaggcta atcttaataa
     2041 cactcccttt tctgactgca attccgggtt tcagattctg cgaaataact ttaccacggc
     2101 cattcacctg tacgtttaat ccaagtcttt cagccaaata aactgcatct tttgcaccca
     2161 ttccactcat atctggcaca acatttcccg gaacagaagc cggctcaatg cgaacttgtt
     2221 tgtgttccgt aaaagttttc acccaatctg tcggattcga ctgcaaaggc atattcaatt
     2281 ctgtcagtac attattcaac gcttta
//
LOCUS       DATDNM010000565        11500 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1994960, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000565 DATDNM010000000
VERSION     DATDNM010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 11500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11500
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1994960"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..692
                     /locus_tag="VI413_09580"
     CDS             <1..692
                     /locus_tag="VI413_09580"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914913.1"
                     /translation="VIVQEKFNSKKNVLTVGDYYVKKKDTQLYWTNANISSTGGTPSF
                     SAKSNLTNNAQVWTVSLDGGYYKIVSKADGRYVNEKGNFGTNAYYVDWNTYNIYSDSI
                     YSAIQITQSAATQAKGTFFWNVNASNGIVYSANTSIDETKDLAFEFVPVTLTALHAVS
                     NPTCSVWTGKRTLGIRCDVDSKVSIYDQLGRVVKQIQMTGEKNILLPAGMYIVKVINN
                     EEQPVVKITVQ"
     gene            788..4132
                     /locus_tag="VI413_09585"
     CDS             788..4132
                     /locus_tag="VI413_09585"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6914914.1"
                     /translation="MKNLKTNAFFHKSIFGLLMLCFSLLALGQSKRSKSVSNTSLRSK
                     ININREWRFAIGDSVGAQSPGYSDAFWSRIGLPHSASAPYFMWKSVYNGYVWYRKQID
                     VPAAWSGKTVTLEFEGVFIESEVFVNGTSVGKHVGGYTGFTFDITNYLTTGTNLIAVK
                     VNNFWKASVAPRAGDHQFSAGIYRDVYLNITDKVHVDWCGTFITTPTVSKTAAICKAQ
                     TDVRNDNSADKTCTVRTDIYDPNGALVATASTTDVVARNSVKTITQLLPEFSNPMLWS
                     PSTPYLHKAITTISVGGSDVDSYETSFGVRWFTWTSDQGFFLNGDHFYLLGANVHQDH
                     AGWGDGVANSAIKRDVQLMKDAGFNCIRGSHYPHDPAFSQACDEIGMIFFSENIFWGM
                     GGGSGDRNSWGTPSSSCYPVNPSDQPLFDKSVLSQLKDAIKVHRNRASIAAWSMCNEA
                     FFTDASTMTGMKNLLNTETDSARAWDPSRAVAIGGAQRGGVDKLGKGAIAFYNGDGAS
                     LYQNPGVPNMVSEYGVAFTQRPGTFIPGWGDLKDGYVRPAWRSGQVIWCGFDHGTVGG
                     EGLAITGIVDYFRLPKRYYYWYQEAYAKGKTNPVEPVWPALDTPAKLKLTSSSNVIKS
                     TDGTDDVQIIATVLNASGTHISNNVPVKLSIVSGPGAFPTGTSIDFAAPSTNEASDIT
                     IRDGQCAIEFRSYYAGTTVIRATSPGLASDSIIITTQGTPIYQEGVTPKTEEHPYHRY
                     IGPTPDPDILNMLLVKNRPVQVSSTLAGTSKSNVNDDSSTTIWQPAVGDTAKWCVLSM
                     EAVYCVNRIQIEFPTADAYRYTIEVSGDGNSWTKVIDQSVSSNNDKIRLAYGNLGRNV
                     GQIRIKFNSAVAGLAEVKVGGAPNLEDNTNLLTGTVIGTAGSWNNTANATKENVFDFD
                     GKTFFDAPSGAATPHWVGLDLGYQAQFNVTKIKYTPREGLQNRMVNGTFEVANKADFS
                     DKAVINTISYAPTSGTYTPVDINNTLYSRYVRYASPTNGNGNVAELEFWGVAKTTDIN
                     EVKGSDSNLRLFYDRLNKQIHINIQGAENASSHCSIVGMDGKIVESELCNANDFTISA
                     SKMKTGVYVVNLTSNNRTYNRKLVVY"
     gene            4630..5529
                     /locus_tag="VI413_09590"
     CDS             4630..5529
                     /locus_tag="VI413_09590"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEY6914915.1"
                     /translation="MGKLPGRQDRHFTYNLSTESGSVDVDWFHYDVNAKQPDVVPVNP
                     GTTDLTHMWTFNDGTAKDVVGSVDRTLRGGATIENGALKTDANGQYLELPAAQLGLTS
                     YLALTMETWFQSKANNANTGYTMLSYFGNMVNKLGSNGCFFTVARGDNVSRTGISCGN
                     TTSPSSNESYANASELDDGMLHQVASVFTNDIVSIYVDGINISAGAVKSGNVVSNILL
                     NYAYLAKSGYLNDQTWLGKIDKFSIYKKALSDDEVQYLYQSGSGVLNSLSTPSPNSLK
                     VYPFVAVDFICFSSLDIIRTGVF"
     gene            5780..7573
                     /locus_tag="VI413_09595"
     CDS             5780..7573
                     /locus_tag="VI413_09595"
                     /inference="COORDINATES: protein motif:HMM:NF015585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HEY6914916.1"
                     /translation="MKTQKLFAKMFLILGLLLLSAKSFSRNPNFYIYICFGQSNMEGQ
                     GAIEAQDKTVDSRFKVLQSLDCTSTSRTKGNWYPALPPLCLCDKGLTPADYFGRTMVQ
                     YLPDSITIGVINVSVGGCDIRLFDKDLYQNYVAVPNETWFTSKIKVYDGNPRKHLMDL
                     ARLAQQDGVIKGILMHQGEANLGDTNWPLYVKKVYNDMLNELSLGADTVPLLSGEVLY
                     SGVYRDMNTIVRQLPNTIPTAHVISAAGCSAMDVAHFSSEGYRIIGKRYAAKMLSLMG
                     ISVDETALGIALKNPINPGSTNLTHQWTFDDGTAKDVVGTANGTLKGGATIANGVLMT
                     DAAGQYLELPASQLGITSYPALSFETWFKSKSGANTGNTMLCYIGDTYSGKGSNGFFL
                     SVARADNTSRVSISCGNTTAPWSAESYAGSAEFDDGLLHQTVGVITSSNITYYVDGIK
                     QTTSALSASNSLANIKLNYAYLAKSGYTADPTWLGSIDKFSLYNKALSDEEVLYLFQN
                     GIAPIATDVQRVKNEKIKLYSNPAGDYISLSGISGNANVEIMDLQGKVLLKDSNVISN
                     QPINVQKLAFGSYLVKISTQDETVMKKILHL"
     gene            8074..11157
                     /locus_tag="VI413_09600"
     CDS             8074..11157
                     /locus_tag="VI413_09600"
                     /inference="COORDINATES: protein motif:HMM:NF013300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004560 - alpha-L-fucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEY6914917.1"
                     /translation="MKKINLFSYAVLVCMLFGFLETQAQCYTPLFPSGNIVTDPECNT
                     ANVYKSWGNYTQITGSLAYCGTSVRVTGGCGGSLDYSLTGKLLPNTSYRLKCMLYSDK
                     DASITLNGCGINGLTSDYQIVKNTGSTWQTVDFYFITGTLASAQNLWINSCSGSNRAT
                     DIRLDNLEIYPATEPVVEIPMEPMDSGKFVPTWESLKQYGEAPEWYQDAKFGIWAHWG
                     PQCQPEQGDWFARFMYYSGGDRNWFTNKYGSDTKLGFKEVINDWKAENWQPDSIVKLY
                     KDAGAKYFFALGNHHDNLDLWDSKYQPWNTVKVGPKKDLIAGWEKATRANGLRFGVSI
                     HASHAWSWYEPSQSYDGNLTAADGAGKWWDGLDPQELYAQNHAHSSGWDNSGTIHSQW
                     NWVSGASIPSKAYCAKFYNRTIDMIKKYNPDLIYFDDTSLPLVAVDAAGNRSTTTVSD
                     VGLKIAASYYNKSANANNGKVENVIFGKILTPDEKECLVWDVERGIPDKPQAKHWQTC
                     TCIGDWHYSRSVYNNNKYKSANTVIHMLIDIVSKNGNLLLNVPLRGDGTYDEKELAVV
                     KGITAWMNVNKESIYDTRTWTIFGEGPTAERANALSAQGFNEGTSYDANDIRYVKKGD
                     SLLYVTVMGWPTGGKAVLKTLGLSQPYLVKGIKNIQILGGGNLTYTRNADGLSINLPA
                     TKPATADIGIAFKISLDTAVNAANLGTMIRIAEVNDSIAKLNTGTNCGQFTPEAVAAL
                     ETAIDAAKAKTLVNCNCLITAEQINAAVDTLKNAIITFQTAKKSEGGFTPLYETGNLV
                     TDPQCSNYPNASSGWSKNWGNGASISDAKAFCGSSIQVTGSCGGSIDYTLTGKLLPNT
                     KYRLKCMLYSDKEAYITLNGMGINGSTSDYQVMKNTGGAWQAVDFNFTTGTLASAQNL
                     WLNSCTGSNRATDIRLDNFELYNMSLLSSVKTVGVDDQNIYIQGNSIVVDFELAQPSE
                     VEISVFNAQGILVKKVNGDFNAGKNRKVINANLASGVCFVKVDCNGQMVTKKLMK"
     gene            11313..>11500
                     /locus_tag="VI413_09605"
     CDS             11313..>11500
                     /locus_tag="VI413_09605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914918.1"
                     /translation="MIENRRRFKIWGVFTLMQILIGFSSGSFVAAATSKEDVVFTDYQ
                     PAISEVVDNDGFKHPGVGL"
BASE COUNT         3454 a         2079 c         2610 g         3357 t
ORIGIN      
        1 atgttattgt tcaggaaaag tttaattcaa aaaagaatgt tttgacggta ggggattact
       61 atgtaaaaaa aaaagacaca caactctact ggactaacgc aaatatttct tcaacgggag
      121 gaaccccttc attttcagca aaatccaacc tgacaaataa tgctcaggtt tggacagttt
      181 cgttggatgg tggatattat aaaatcgtaa gtaaagccga tggacgttat gtgaatgaaa
      241 agggaaactt cggaacaaat gcttactatg tagattggaa tacttacaat atctatagtg
      301 atagtattta ttcagctata caaattacac aaagtgcagc aacacaggca aaaggcactt
      361 tcttttggaa tgttaacgcg agtaatggca ttgtgtattc agcgaataca agcattgacg
      421 aaactaaaga tttggctttt gaatttgtac cggtaacgtt aacggctttg cacgcagttt
      481 caaatccgac ctgttctgtt tggactggta aaagaacatt gggcatcaga tgtgatgttg
      541 attctaaggt gtccatttat gatcaattgg gtcgtgtggt taaacagatt caaatgacag
      601 gagaaaaaaa tattttgctt ccggcaggaa tgtatatcgt gaaagtaata aataatgaag
      661 aacaacctgt agttaaaatc actgtacaat aatttaaatt cagaacgaac atttgctgta
      721 ttaataaata ttccttgaag tcaatacggc atttttttat tgatccaata aaagttaata
      781 ttaaatcatg aaaaatctta aaactaatgc tttttttcat aaaagtattt ttggactgct
      841 aatgctatgt ttttctttgc ttgcgttagg tcagtcaaag cgttctaaat cagtctcgaa
      901 tacgagcctg agaagtaaaa taaatattaa tcgtgaatgg agatttgcga taggagactc
      961 agtaggagct caaagtccgg gatatagcga cgcattctgg agtaggatag gactgcctca
     1021 ttccgcttct gccccttatt ttatgtggaa atctgtttat aatggttatg tctggtatcg
     1081 caaacagata gatgttcctg ctgcatggag tgggaaaacg gttacccttg agtttgaagg
     1141 tgtgtttatc gaaagcgaag tatttgtaaa cggaacttca gtgggtaagc atgtgggagg
     1201 atataccgga tttacttttg atattacaaa ctacctgact acaggtacta acctgatagc
     1261 tgtaaaggta aataacttct ggaaagcaag cgttgcacct cgtgccggcg accatcagtt
     1321 tagtgctggc atttatcgcg atgtctacct gaatatcact gacaaagtgc atgttgactg
     1381 gtgcggtact tttattacaa ctcctactgt aagtaaaaca gctgccattt gcaaagcgca
     1441 aacagatgtg agaaatgata attcagcaga caaaacctgt acagtaagga ctgatattta
     1501 tgaccccaat ggagcgttgg tagctacagc ctcaaccacc gacgtcgtag cacggaactc
     1561 ggttaaaaca attacccagt tgttgcctga gttttcaaac ccaatgcttt ggtctccttc
     1621 tacaccttac ttgcataaag caattaccac aatttcggtt ggcgggtcag atgttgatag
     1681 ctacgaaacg tcctttggtg ttcgttggtt tacatggacg agcgatcagg gatttttcct
     1741 gaatggtgac catttttatt tgctgggagc caatgttcat caggatcatg caggttgggg
     1801 cgatggtgtt gccaattctg ctattaaaag agacgtgcag ttgatgaaag atgcaggctt
     1861 taactgtatt cgtggttcgc attaccctca cgatccggct ttctcgcagg cttgtgatga
     1921 aataggaatg atatttttct ccgaaaatat tttttgggga atgggtggag gctctggcga
     1981 ccgaaacagc tggggaacac cttcttcaag ttgctatcct gtcaatccat cggatcaacc
     2041 cttgtttgac aaaagcgtat tgagtcagct gaaagatgca atcaaagtgc atcgcaacag
     2101 agcttcaata gctgcatgga gtatgtgtaa tgaggcattt tttacagatg cttctacaat
     2161 gaccggaatg aaaaacctgc tcaatacaga aacagatagt gccagagcct gggatccaag
     2221 tcgcgctgtg gctattggtg gagcacaacg tggtggtgtc gacaaattag gtaaaggagc
     2281 catcgcattt tacaatggag atggagcatc attatatcaa aacccgggtg tgccaaatat
     2341 ggtctctgaa tatggagttg cttttactca acgtccgggt acgtttattc ctggttgggg
     2401 cgatttgaaa gatggctatg tacgtccggc atggagaagc ggacaggtta tctggtgtgg
     2461 attcgatcat ggaactgttg ggggcgaagg acttgccata acgggtattg ttgattattt
     2521 ccgtttgcca aaacgttact attattggta tcaggaagcg tatgcaaagg gaaaaacgaa
     2581 tccggttgaa cctgtctggc cagccttaga cacccctgca aaattgaaac tgacatcctc
     2641 cagcaatgtg attaaaagca ccgacggtac agatgatgtt cagataattg ctacagtact
     2701 taatgctagt ggaacacata tcagcaataa cgttccggtg aagctttcaa tcgtttcagg
     2761 tccgggagca ttccctacag gaacttctat tgattttgca gctccatcaa ccaacgaagc
     2821 atcggatatt actatccgcg atgggcaatg tgctattgag ttcaggtcat attatgccgg
     2881 aactactgtt atacgagcta cgtcgccggg attagcgtca gatagtatta ttattacaac
     2941 tcagggaact cctatttatc aggaaggtgt aactcctaaa acagaagagc atccctatca
     3001 ccgttatatt ggacctaccc cggatcccga tattcttaat atgttattgg tgaagaacag
     3061 accagttcag gttagttcta cattggctgg aacatctaaa tctaatgtaa atgatgattc
     3121 atctacaact atttggcaac cggcagttgg cgatacagcc aaatggtgtg tgttaagtat
     3181 ggaggctgtt tattgtgtaa acaggattca aattgaattc cctacggcag atgcgtatcg
     3241 atataccatt gaggtatcgg gcgacggcaa tagctggaca aaagtaatag accagtcggt
     3301 aagttcaaat aacgataaaa tacgtttggc ttatggtaat ctgggacgta atgttggaca
     3361 aatcagaata aaattcaatt cggctgttgc agggttggct gaagttaagg ttggcggtgc
     3421 tcccaatttg gaggataata ccaatttgct gaccggtact gtaattggta ctgcagggtc
     3481 atggaacaat actgccaatg caacgaaaga aaatgttttc gatttcgatg gcaaaacttt
     3541 tttcgatgca ccatcgggtg ctgcaacacc gcattgggtt ggtttggact tgggctatca
     3601 ggctcagttt aatgtaacga agataaaata cactcctcgc gaaggattgc agaaccgcat
     3661 ggtgaatgga acatttgagg ttgctaacaa ggcggacttt agtgataaag ctgttattaa
     3721 taccattagc tatgctccga catctggtac atatacaccg gtagatataa acaatacgct
     3781 ttattcacgc tatgtgaggt atgcttcacc aaccaatgga aacggtaatg tcgcagaact
     3841 tgagttctgg ggtgtagcca aaaccactga cataaatgaa gtaaaaggct cagactcgaa
     3901 tttgagatta ttctatgata ggctaaataa acaaatacat atcaatattc aaggagcgga
     3961 gaatgcttcc agtcattgtt ctattgtagg tatggatggg aaaattgtag aaagtgaatt
     4021 gtgcaatgct aacgatttta ccatttcagc aagtaaaatg aaaaccggag tttatgttgt
     4081 caatttgact tcaaataata gaacgtataa ccgaaaactg gttgtttatt aaatctgttt
     4141 ggatgtggat tcttaaaaag gcatatgttt aaattgcttt ttgattattc cactttacta
     4201 caagccatgt ctatttacgt ggcttgtggt ttttagcaaa cggatagaaa ttagcctgtt
     4261 ttattgtttt ttagggctga ataaattaag ctttttaatc aattttgttc caaattataa
     4321 tgtgggacta ataaacaaca aataatttga ttcttttttg atttagacat acatttgcat
     4381 atgaaattat ttcaatgaac tagccggaat atgccattat gcaaatacat attctgcttt
     4441 tggtgtaaag caggtttcgg gtgtgcgcta tctctctttt aataacaacg gaactgaaac
     4501 tataggaaaa gcaataaccg attcgattgt atatttaaac tcgacttgga ggttggatgg
     4561 caactcttaa tattcattca gtaccgatgg cactaccttc gaaccgtttg gaagtaaata
     4621 tccactcaca tggggaaatt accggggcga caggataggc attttaccta caatctatcg
     4681 accgaaagtg gctctgttga cgtagactgg tttcactatg atgtaaatgc caaacagcct
     4741 gatgttgtcc ctgttaatcc gggaactacc gatttgaccc atatgtggac atttaatgat
     4801 ggaacagcaa aggatgtagt ggggagtgtt gatagaacat tgcgcggtgg ggcaactatc
     4861 gagaatggtg cattaaaaac cgatgccaat ggtcaatacc tcgaactgcc ggctgctcaa
     4921 ttgggtttga catcctatct ggcactcacg atggagacct ggtttcagtc gaaggcaaac
     4981 aatgccaata caggatacac tatgcttagc tattttggca acatggtgaa taaattagga
     5041 tcgaacgggt gtttttttac agttgcacgg ggcgataatg taagtcgtac tgggatttcg
     5101 tgtggtaata ctacctcgcc aagtagcaac gagagttatg ccaatgcttc ggaactggac
     5161 gatgggatgc tacatcaggt agcaagtgtt ttcacaaatg atattgtttc gatctatgtg
     5221 gatgggataa atattagtgc aggtgccgtt aaaagtggga atgttgtttc caatattctg
     5281 ttgaattatg cgtatctggc taaaagcgga tatttaaacg atcaaacctg gttggggaaa
     5341 atagacaaat tcagcattta caaaaaagca ttgtccgacg atgaagtaca atatctttac
     5401 cagagtggaa gcggcgtgtt gaattcgttg tcaactccct caccaaatag tcttaaagtg
     5461 tatccatttg ttgcagttga ttttatatgt ttcagttcgc ttgatattat acggactgga
     5521 gttttttaaa ttaacaaata tcgccatgta gcaaatttac tcccgatcta taaccaattt
     5581 acagaaggga cagtttgata tatcatctgt tcctgtcgga atgtatgtgg ctcaggtaat
     5641 tgaaaataag gtgagtgtgt catctttggt tgtaacgaaa ttatgagatt tgaccgattg
     5701 ttgaatttta aaataatcta atattacttg tggtctaact gcactacagg tttgataaat
     5761 aataatataa attaagttta tgaaaacaca aaaactcttt gcgaaaatgt tcttgatatt
     5821 aggattgctt ctgttgagtg ctaagtcatt ttctcggaat ccaaatttct atatttatat
     5881 ctgtttcgga cagtcgaata tggaaggaca gggagctatt gaagctcagg acaaaacagt
     5941 tgatagccgc tttaaggttc ttcaatcgtt ggattgtaca agtaccagtc gaactaaagg
     6001 aaattggtat ccagcactgc ctccattatg cctttgcgac aaagggctta cacctgccga
     6061 ttatttcggg aggactatgg tgcaatacct gccggatagc atcactatag gcgttatcaa
     6121 tgtgtcggtt ggcggttgcg acattcgcct gtttgataaa gatctttatc agaattatgt
     6181 cgctgtaccc aacgaaacct ggtttacgtc caaaattaag gtgtacgatg gcaatccacg
     6241 caaacatctg atggatctgg ccagattggc acagcaggat ggcgttatca agggaatact
     6301 tatgcaccaa ggcgaagcaa acctgggtga tacgaattgg ccgttgtatg tgaaaaaggt
     6361 ttacaacgat atgctaaacg aactctcttt aggagctgat acggtgcctc tattgtcggg
     6421 tgaggttttg tattccggtg tttataggga tatgaatacc attgtcaggc agcttcctaa
     6481 taccattcct actgcacatg taatttcggc agcaggttgt tcggcaatgg atgtcgcgca
     6541 ctttagctcc gaaggttaca gaataatcgg gaaaagatat gctgcaaaga tgctttcgtt
     6601 aatgggaatt tcggtagatg aaacagcttt gggaattgcg ttgaagaatc ctattaatcc
     6661 cggaagcacc aacctgacac atcaatggac ttttgacgat ggtacggcta aagatgtggt
     6721 aggtactgca aatggaactt tgaagggagg tgctactatc gctaatggcg ttttaatgac
     6781 tgacgctgcc gggcaatatc ttgagcttcc ggccagtcaa ttgggaatta cttcatatcc
     6841 tgcattgtct ttcgaaacat ggtttaagtc aaagtccgga gccaatacgg gcaacaccat
     6901 gctttgttac ataggtgaca cctacagtgg caaaggctcg aatggttttt ttctttctgt
     6961 ggcgagagcc gataatacca gtagagtttc catttcgtgt ggcaacacca ccgcaccctg
     7021 gagtgctgag agttatgccg gttcggctga atttgacgat gggcttttgc atcagaccgt
     7081 cggggtgatt acttcctcga atatcacata ctacgtggat ggaatcaaac aaaccacttc
     7141 ggcattatcg gccagcaatt ccttggcaaa tatcaaactc aattacgctt atctggccaa
     7201 aagcggatat actgccgatc cgacctggct gggaagtatt gataaattca gtttgtacaa
     7261 taaggctttg tccgatgagg aggtgctata tctatttcaa aatggcattg ctccaattgc
     7321 tacagatgta caaagggtaa agaatgaaaa aataaagtta tactcaaatc ccgctggtga
     7381 ttacatttct ctctcgggaa tatctggtaa tgcgaatgtt gaaataatgg atttgcaagg
     7441 taaagtgttg ttaaaggaca gtaatgtgat ttctaatcag ccaattaatg tgcagaagtt
     7501 agcctttgga agctatttgg tgaaaatttc gacacaagac gaaactgtaa tgaaaaagat
     7561 tttacattta taagctgtat agttctaacg tgagttcgag ataagaaaac tcttatgaat
     7621 caagatggat tcatctaaga atcctgtaag gtggggtgtc aaaaatcaaa gatgtcgtgg
     7681 aaataacttt tttctacttt attcattagt gagcaaaact ccgcattgtt atcccgtgct
     7741 tgacacaggc tctcaaagcc gcaagtatgc tgcggtaagc gacttttctc gattgggata
     7801 tcccgtatca agtgcgggat aacaacatta tcttttgaaa actgtaaaca aaattcagga
     7861 cgatacagta tagatctcac caatcttaat ttttggaacg aagaaatatt ttcaaacatc
     7921 aacatttttg acacccctgt gaagcggtat taaaaaagtt cttgctctgt tgaaaaagat
     7981 attcaggatg atagtctagt tctaaaaaaa atggctgttt gtttgaaatg acattctcat
     8041 acagaaattt ataaaccata atacaaatat caaatgaaaa aaattaatct cttttcttat
     8101 gcagtacttg tctgcatgct gtttgggttt ttagaaacac aagcgcaatg ctacacgcct
     8161 ctttttcctt cggggaatat agtgactgat ccggaatgta atactgccaa cgtttataaa
     8221 agttggggta attatactca aattaccggt tctttagctt attgtggaac cagtgttcgg
     8281 gtaacaggtg gttgcggtgg atccttagat tattctctta caggtaagtt attaccgaat
     8341 accagctatc ggttgaaatg catgttgtac agtgacaaag atgcgtctat cacattgaac
     8401 ggttgtggta tcaatggatt gacatctgat tatcaaatag taaaaaacac tggcagcact
     8461 tggcagacgg tagattttta ttttatcaca ggaactttgg cttcggctca aaatctttgg
     8521 ataaatagct gttcgggttc aaaccgggcg accgacattc gtctggataa cctggaaatt
     8581 tacccggcaa ccgaacccgt agttgagata cccatggaac ccatggattc aggtaaattc
     8641 gttcctactt gggaatcatt gaaacagtat ggtgaggctc ctgaatggta tcaggatgct
     8701 aaattcggta tttgggctca ctgggggcca cagtgccagc ctgagcaagg cgactggttt
     8761 gcccgattca tgtattattc gggaggcgac cgcaactggt ttactaacaa atatggttca
     8821 gataccaaac ttggatttaa ggaggtaatc aatgactgga aagccgaaaa ttggcagccc
     8881 gacagcattg tgaaactcta caaagatgcc ggtgcaaaat attttttcgc gttaggaaac
     8941 caccacgata atctggattt gtgggatagt aaatatcagc catggaatac ggttaaagtt
     9001 ggtcctaaaa aagaccttat tgctggttgg gaaaaagcta caagggctaa tgggttgcgt
     9061 ttcggggtaa gtatccatgc ttctcatgca tggtcgtggt atgaaccttc gcagagttac
     9121 gatggaaacc ttacagcggc agatggtgca ggcaaatggt gggatggtct cgatccgcag
     9181 gaactttatg cccaaaatca tgcacatagt agtggctggg ataattccgg aacaattcac
     9241 tcccaatgga attgggtgag tggtgcgtcc attccgtcaa aagcttattg tgctaagttc
     9301 tacaacagga cgattgatat gattaaaaaa tacaatccgg acctgattta tttcgatgac
     9361 acttctctgc ctttggttgc cgtggatgct gcaggcaacc ggtcaactac cacagtgagc
     9421 gatgtgggtc tgaagattgc agcaagctat tacaacaaaa gtgcgaatgc gaataatggg
     9481 aaagtagaga acgtcatttt tggcaagatt cttactccgg atgaaaaaga atgtctggtt
     9541 tgggatgttg agcgtggtat tcccgacaag cctcaggcaa aacattggca aacttgtacc
     9601 tgtatcggcg attggcatta tagtcggtcg gtttacaata ataataagta taaatcagcc
     9661 aataccgtta tacacatgct gattgatatt gtgagcaaaa acggtaattt attgttgaat
     9721 gttccacttc gtggagatgg aacctacgac gaaaaagaac tggcagttgt taaggggata
     9781 accgcgtgga tgaatgtcaa caaagagagt atttatgaca cccgcacatg gacaatattc
     9841 ggcgaaggtc ctacagctga gcgcgccaat gcacttagcg cccagggttt caacgaaggt
     9901 acttcttatg atgcaaacga tattcgctac gtgaaaaaag gagatagctt gctgtatgtt
     9961 acggtgatgg gatggccaac agggggcaaa gccgtgctga aaaccctggg cttaagccaa
    10021 ccatacttgg ttaagggcat taagaatatt cagatcctgg gtggcggcaa tttgacttat
    10081 acccggaatg ctgatggttt gagcattaac ctgcccgcta caaaaccagc tactgccgac
    10141 attggtattg ctttcaaaat ttccctcgac acggctgtta acgctgcgaa cctgggaaca
    10201 atgatccgta tagcagaagt gaacgacagc attgccaaat tgaataccgg caccaactgc
    10261 ggtcaattca ctcccgaagc cgttgctgca ttggaaactg ccattgatgc tgccaaagca
    10321 aaaacgttgg tcaattgtaa ttgtcttatt accgctgaac aaatcaacgc agctgtcgat
    10381 accttgaaaa atgccatcat cacattccaa accgcaaaaa aatcggaagg tggatttacg
    10441 cctctttatg aaaccggcaa tttagtgact gatccgcaat gttcaaacta tccgaatgca
    10501 agtagtggct ggtctaaaaa ttggggtaac ggagctagca tttctgatgc caaagccttt
    10561 tgtggatcca gtattcaagt aactggcagt tgtggaggat ccatagatta cacgcttaca
    10621 ggtaaattat tgccaaacac caaataccgg ttgaaatgta tgttgtatag cgacaaagaa
    10681 gcttatatca cattgaatgg tatgggtata aacggatcaa catccgacta tcaggtaatg
    10741 aaaaatacag gtggtgcttg gcaggcagta gacttcaatt ttaccacagg cactttagca
    10801 tctgcccaaa acttatggct aaatagttgt actgggtcaa atagggcaac ggatatccgt
    10861 ctcgataatt ttgaattgta taatatgagt ttactttcat cagtaaaaac tgttggtgta
    10921 gatgatcaaa atatatacat tcaaggtaat tcgattgttg tcgattttga attagcccag
    10981 ccttctgaag tggaaatttc tgttttcaac gctcaaggta tattggtgaa aaaagtcaat
    11041 ggcgatttca atgccggcaa aaatcgcaaa gtgattaatg ctaatttggc ttcgggagtg
    11101 tgttttgtta aagtggattg taatggacag atggtgacta agaaactgat gaaataaatc
    11161 attcttgttt gttggattct taaaacggtt tatttgaaga ttgtttcaaa taaaccgctt
    11221 ttggtgctta tattcaaata attacgataa taaattatgg cccattccag agctataaaa
    11281 tcaaactatc ttttgtccaa taacacttac ttatgattga gaatagaagg agatttaaaa
    11341 tttggggtgt ttttacactc atgcaaatcc tgattggatt tagtagtggg tcatttgttg
    11401 cagctgccac atcgaaagaa gatgttgttt ttaccgatta tcaaccggct atcagtgaag
    11461 ttgtcgataa tgatggattt aaacatccgg gcgttggcct
//
LOCUS       DATDNM010000566         2430 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1353303, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000566 DATDNM010000000
VERSION     DATDNM010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1353303"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1028..1717
                     /locus_tag="VI413_09610"
     CDS             1028..1717
                     /locus_tag="VI413_09610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914919.1"
                     /translation="MRKINFVAIMLFCGLTVFGQAVKDRNVIPVAVNLNQVLRMTVTN
                     GGNIEFVFNTIDQYKNGLSAATATTGVFYETDFTIASSTRWKLTYGAETSTFVGTDNP
                     ANQLALDNVGFELTESGAHSFEATLVKATTAGAELYSAPTFGGAEVAALEAYPVVLIE
                     DNDQAGADASANAGDATDNTFKMSWRCGTKESQGLTTPMNAVALIDQQPTPTPDRYVV
                     NVLFDLSIDEL"
     gene            1832..2365
                     /locus_tag="VI413_09615"
     CDS             1832..2365
                     /locus_tag="VI413_09615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914920.1"
                     /translation="MLLLIFISTATGMSQEWNSARISVLYGSSIPFNFNSLDKIKNGI
                     EVTTGTRFGISMADSTGHVLTGFVLYCRTFNNQAVIKGDSYSLPLNRIRIKAENVIGL
                     ETGISAGYKDLTSDWIPLFTYTNLTWTDLTWNNAQLNIAFECGKVAESGESTSLLGEE
                     PDYYNVEVEFELVPTFE"
BASE COUNT          745 a          384 c          468 g          833 t
ORIGIN      
        1 acaacaaatc acgtcaacag gccattacaa atgaattact cgatattgtg ggtggttcat
       61 tcggacgaaa ttgaaaatcg gattataaac cctgaaggcc gcaatttttg cggccttttt
      121 tgtttctatt gttttcatac agctatatcc agctcttttt tactccattt ttgactgatc
      181 catgcttatg tcctaataat tgctctgtgt ggctttgtaa gttgctgtaa ttcaggtggc
      241 tgaaaaaatg cttgtcttaa tttgttttgt acgaaaattt ggacatgttg tcactaattt
      301 ataatttagc gctgcaaagt attacttagt tcagattttg acaacgtaaa aggaacaata
      361 attatattca tggagaaact ggataaggtg gattttaaat tgtgtatttt ataacaattg
      421 gaaatatttt tttgcacttt gaattttgag aattaaatgt tgcctttttt gtatatcttg
      481 aagccaggta gtgaaataat atttagatga taaaaaatgg agtcttcttc attgcctatt
      541 aataatcgta ttttgtataa tgaactatat gttgttttta aataggcgtt agtgctattg
      601 ttgtataata atacattagc ttgtattatt atataggatg ctctgatatt tttacggtta
      661 aataaggtta atgtatgtgt atgatttgaa atatatacgc tggatctttt cgtttttttt
      721 tatttgttta aaacattgaa agataaatag aagccttttt ttctggaatg tttttctggg
      781 taaataaaat gtagatttaa atgaaaaacg agattaagga taaaaaaaac ttttggacgt
      841 tatgaaaaaa gtactacttt cgcatgctgt aatttcatta aaatatacta atggccgaac
      901 tataaaccta gcacagagac tatcgaaaac tgattccata cgaaactcaa aagactattc
      961 acacaattta ctttaataat cagttttaat taaattttat tatcaacaat ttcaaaaaat
     1021 tacatttatg agaaaaatta atttcgttgc aattatgctg ttctgtggtt taacagtatt
     1081 cggacaagcc gtgaaagaca gaaatgttat tccggtagca gtaaatctta atcaggtatt
     1141 gcgtatgact gttaccaatg gtggtaatat tgaattcgtt ttcaatacta ttgaccagta
     1201 caaaaacggt ttgtcggcag ctactgcaac tacaggagtt ttttatgaaa cagatttcac
     1261 tatagcttca tctacccgtt ggaaattaac ttacggtgct gaaacttcta cttttgttgg
     1321 tacagataat cctgctaacc agttagcttt agacaatgtt ggttttgaac ttacagaatc
     1381 aggtgcacat agttttgagg ctactcttgt taaggcaact actgcaggtg ctgagttgta
     1441 cagtgctcca acttttggag gtgctgaagt agctgctttg gaagcttatc cggttgtttt
     1501 gatcgaagat aatgatcagg ctggtgcaga cgcatctgcc aatgctggtg atgcaacaga
     1561 caatacattc aaaatgagct ggcgttgtgg aacaaaagaa agccagggtt tgacaactcc
     1621 aatgaacgca gttgctctta tcgatcagca accaactcca actcctgaca gatatgttgt
     1681 gaacgtgttg ttcgatcttt ctattgatga actgtaagaa tcatatctaa aataaagaag
     1741 attgatcagc atattttgct ggtcaatctt tttatttcat atttcaatag ttttcccatt
     1801 catgatttac aaaccattcc gtacattgtt aatgttgctg ctaatattca ttagtacggc
     1861 tacgggcatg tctcaggaat ggaattcggc acggatttcc gtcttgtatg gaagttccat
     1921 tccgtttaac ttcaattcgc tcgacaaaat aaaaaatgga attgaggtga ctacgggtac
     1981 ccggtttgga atatcaatgg cagactcaac agggcatgtg cttacgggct ttgtgcttta
     2041 ctgtcgtaca ttcaataatc aggcggttat taagggcgat tcttattcgc tgcctttgaa
     2101 ccggatcagg atcaaggccg aaaatgttat tgggctcgaa accggaattt ctgcaggata
     2161 taaagatctg acctcggatt ggattccact tttcacttat acgaatttaa cctggactga
     2221 cttgacctgg aacaatgccc agttgaatat tgctttcgaa tgcggcaaag ttgccgaatc
     2281 gggagaaagt accagtttgt tgggcgagga gcccgattat tataatgtgg aagttgaatt
     2341 cgaattagta cctacctttg aataaggcct tagatagttt ttacaaaaga taaatttgaa
     2401 aaacagtgtc attcttcgat aacaaaaatc
//
LOCUS       DATDNM010000567         3598 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_926624, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000567 DATDNM010000000
VERSION     DATDNM010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_926624"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            7..156
                     /locus_tag="VI413_09620"
     CDS             7..156
                     /locus_tag="VI413_09620"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914921.1"
                     /translation="MALSSLYILFATMSTTFSVSGSMSAFAAVWLPNAVFLLIGIYLY
                     RTAPK"
     gene            complement(245..1303)
                     /gene="rfbB"
                     /locus_tag="VI413_09625"
     CDS             complement(245..1303)
                     /gene="rfbB"
                     /locus_tag="VI413_09625"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019150448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEY6914922.1"
                     /translation="MKKTILITGGAGFIGSHVVRLFVTKYPDYQIINLDALTYAGNLE
                     NLKDVDDAPNYKFVKGDITDEKFIAELFKTYQFDGVVHLAAESHVDRSITDPFAFIRT
                     NVFGTCNLLNAAKEAWKSNMEGKRFYHVSTDEVYGALEFDGTFFTETTKYDPHSPYSA
                     SKASSDHFVRAYHDTYGLPVVISNCSNNYGANHFPEKLIPLSINNIKNNRPIPIYGKG
                     ENVRDWLFVNDHARAIDTIFHNGNNGETYNIGGNNEWSNIDLIHALCKIMDRKLGRAE
                     GESAKLITFVKDRAGHDLRYAIDSSKLQRELGWKPSLQFEEGLEKTVDWYLENQEWMD
                     NIINGDYKNYYEKQYSER"
     gene            1420..2379
                     /locus_tag="VI413_09630"
     CDS             1420..2379
                     /locus_tag="VI413_09630"
                     /inference="COORDINATES: protein motif:HMM:NF036727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEY6914923.1"
                     /translation="MEKFCKHIEKLLAQHDYVVVPDLGGFVVQMQSAQLLPDRITPPH
                     ATIAFNPLMHHADGLLAIEIARTEKISYRKAVEYIEKEIESTKFKLNSTGSISFGNLG
                     TIRQDETGNLLFAPKPKVDFLPQNFQLSDLFIATKELRKVESKKKITITMPSGNMFKY
                     AAAAMILFGLFAVTPKVSDSRTNSANLVNITFAPKPKVKPQATTIVAADSLKEIKDTI
                     KIALQKSTAPNTEIKTVAETKVSKEVLDFHVIVASSATKESAERYCKELVADNFKEAQ
                     VLPPVKTYRVAIQSFSDREEAIRYMENLRQTDSRFETAWVLCN"
     gene            2497..3039
                     /locus_tag="VI413_09635"
     CDS             2497..3039
                     /locus_tag="VI413_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEY6914924.1"
                     /translation="MPTKIRLQRHGRKGYAYYHIVIADSRAPRDGKFIERIGSYNPNT
                     NPATIDLKFERALYWMTTGAQPTDTTRNILSAEGVLMKKHLLEGVKKGAFDAAEADKR
                     FEAWKASKESNLVKTKEQLAAEKQTAAKARLAAEVEVNKAKAAELAKKKAEAIAAAAE
                     AAAVTEEVPAQAPVAEEAAE"
     gene            3197..3487
                     /locus_tag="VI413_09640"
     CDS             3197..3487
                     /locus_tag="VI413_09640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-binding protein"
                     /protein_id="HEY6914925.1"
                     /translation="MDKIVNIALQILPTSKKVHPYSIVDKAIEVIANSGLRFKVCPFE
                     TVMEGSYDKIMEVVKQAQEACYEAGADSLMTYVKIQTSKTDVSIDDKMEKYE"
BASE COUNT         1220 a          745 c          642 g          991 t
ORIGIN      
        1 atcggactgg ccctcagctc gttgtatata ttattcgcga ccatgtccac caccttttct
       61 gtaagtggaa gcatgtctgc atttgcagcc gtttggttgc caaacgcggt cttcctgcta
      121 attggaatat atctttacag aacagcacca aaataatgcc caaatactga aaaggggatt
      181 tacaataaaa cgagctaatc agagaaatct gattagctcg ttttattata aatcgtaaat
      241 ccggttatct ttccgagtat tgtttttcgt aatagttttt ataatcgcca ttgatgatat
      301 tatccatcca ctcctgattt tcaagatacc agtcaacggt tttctctaaa ccttcttcga
      361 actgaagcga tggcttccaa cccaactcac gctgcaactt gctcgaatca atagcatagc
      421 gcaaatcatg tccagcacga tcttttacaa aagtaatcag tttagccgat tcaccttccg
      481 cacggcctaa cttccggtcc ataattttgc aaagtgcatg aatcaaatca atattcgacc
      541 attcattatt tccgccaata ttgtaagtct cgccattatt accattatga aaaatagtat
      601 cgatagcacg agcgtgatca tttacaaaca gccagtcgcg tacattctca ccttttccgt
      661 aaatagggat cggacggtta tttttgatat tattgattga aagcggaatc aatttttcgg
      721 gaaaatggtt tgctccataa ttattcgaac aattcgaaat aaccacaggt aatccgtaag
      781 tatcgtggta agcacgcaca aaatgatcgg acgaagcttt actggccgaa tatggtgaat
      841 gcggatcata tttagttgtt tcagtaaaga atgttccatc gaattctaat gcgccataca
      901 cttcatcggt tgaaacgtga taaaaacgtt ttccttccat attacttttc cacgcttctt
      961 ttgctgcatt cagcaaattg caggttccaa atacattggt gcggataaat gcaaacggat
     1021 cagttatcga acgatcgaca tgcgactcgg ctgccaaatg cacaactccg tcaaattgat
     1081 aagttttgaa caattccgca ataaactttt cgtcggtaat atcacctttt acaaatttat
     1141 aattaggcgc atcgtccaca tctttcaggt tttccaggtt acctgcataa gtcaaagcat
     1201 ccagattaat aatttgataa tcgggatatt tagttacaaa taagcgaact acatgggagc
     1261 caataaatcc ggcaccacca gttatcaaga tcgttttttt cattttatat taattttgaa
     1321 gtagcacaaa gatacatcgt tttcttgggt ctaacaactt gttgataact tttggtcgta
     1381 aaaaatctcc gtctgattct attcatctac ttttgcagcg tggaaaaatt ctgtaaacat
     1441 atcgaaaaat tattggcaca acatgattat gtggttgtac cagatttagg tggttttgta
     1501 gtgcaaatgc aatcggcgca actcctaccc gatcgcatca cgccacctca tgcaaccatt
     1561 gcattcaatc cgttaatgca tcatgccgat ggacttcttg ccatcgagat tgcccgtacc
     1621 gaaaaaatca gctacagaaa ggctgtagaa tatattgaaa aagaaattga aagcactaag
     1681 ttcaaactaa actcaaccgg aagcatttct ttcgggaact taggaaccat cagacaggat
     1741 gaaaccggca atttgctttt cgcccctaag cccaaagtag atttcctgcc tcaaaatttt
     1801 caattatccg atctgtttat tgcaacaaaa gagctcagaa aggttgaaag caagaaaaag
     1861 ataacgatca caatgccttc tggcaacatg ttcaaatatg cagctgcagc aatgatacta
     1921 tttggcctgt ttgctgtaac accaaaggta agtgactcac gaacaaacag cgcaaatctt
     1981 gtgaatatca catttgcccc caaacccaag gtaaagcccc aagctacaac aattgtagca
     2041 gcagactccc tgaaagaaat taaggacaca ataaaaattg ctttacagaa atcaaccgca
     2101 ccaaacactg aaattaaaac tgtcgctgaa actaaagttt caaaagaagt attggatttt
     2161 catgtaattg tagcaagttc tgcaaccaaa gaatcagcag aaagatactg caaggaatta
     2221 gttgccgaca atttcaaaga ggcacaggtg ctgccgcctg tcaaaacata tcgtgttgcc
     2281 atccaatcat tctcagaccg tgaggaggca attagatata tggaaaatct ccgtcaaact
     2341 gacagccggt ttgaaactgc atgggtgctc tgcaactaat taacagtcca taattgtgaa
     2401 ttatcaatta gttattctga attgaaataa aattactatc tttgcaaccg cttttcgaga
     2461 aaaagcatta ggtataatca tttaataaat aaaaaaatgc caactaaaat cagattgcaa
     2521 cgtcacggac gtaaagggta tgcttattat catatcgtta tcgctgacag cagagcgcca
     2581 cgtgatggca aattcatcga acgtatcggt tcttacaacc caaacaccaa cccagcaact
     2641 atcgatttaa aattcgaacg tgctttgtat tggatgacaa caggtgcaca accaaccgac
     2701 acaactcgca acatcctttc agctgaaggt gtattaatga aaaaacactt acttgaagga
     2761 gtaaaaaaag gagcattcga tgcagcagaa gccgacaaac gtttcgaagc atggaaagca
     2821 agcaaggaat cgaaccttgt aaaaaccaaa gaacaattag ctgctgaaaa acaaactgct
     2881 gctaaagcgc gtttagctgc tgaagtagaa gtaaacaaag ctaaagctgc tgaattagca
     2941 aagaaaaaag ctgaagctat tgctgccgct gcagaagctg ctgcggtaac cgaagaagtt
     3001 cctgctcaag caccagttgc cgaagaggct gccgaataac aatcagcaaa ctaaatagaa
     3061 caaaaaaccc ggaagcaatt tcgggttttt gtttttaaaa gagagaataa agagcaattt
     3121 atttttgcgt ttaaacacaa tttttcaaac atattatcgt ttatttctat taatacctct
     3181 aatactaaat ttaaaaatgg acaaaattgt caatatagcc ctgcaaatcc tcccgacttc
     3241 aaaaaaagtt cacccctact ccattgttga taaagccata gaagtcattg ccaactcagg
     3301 attaagattc aaagtatgcc ccttcgaaac cgtcatggaa ggcagttatg ataaaattat
     3361 ggaagtagta aagcaagccc aggaagcatg ctacgaagcc ggagccgaca gtctgatgac
     3421 ttatgtaaag attcagactt cgaaaaccga tgtaagtatt gatgataaaa tggagaaata
     3481 cgagtaacag tctaacttct acaatgctct aagaataata atttgtatgg aaattagtta
     3541 ttttacgaag aaaatatcta caataattaa tcaatctcaa ctttcaaaaa ggctttat
//
LOCUS       DATDNM010000568         2047 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1566931, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000568 DATDNM010000000
VERSION     DATDNM010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1566931"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..551)
                     /locus_tag="VI413_09645"
     CDS             complement(<1..551)
                     /locus_tag="VI413_09645"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6914926.1"
                     /translation="MKAVIIGAGVGGITTALLLARNGYSVDIYEKNANAGGRCGQLIQ
                     NGHRFDLGATILLMPSLYRQVFSSFGLDMDKELETTSLEPVYKLFFGDGTDFAFTRNP
                     ARMKEQLEAIEPGSFAHYEKYVKEGYDFFGQSMDGLLNRNFYHLFQFINLKSTLLLIR
                     LKTWIKHTDYIQRFFKDPRLQKA"
     gene            complement(1133..>2047)
                     /locus_tag="VI413_09650"
     CDS             complement(1133..>2047)
                     /locus_tag="VI413_09650"
                     /inference="COORDINATES: protein motif:HMM:NF012409.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase"
                     /protein_id="HEY6914927.1"
                     /translation="LQPCQNKLQQQMKHGLIIILSFLSMNCVPQPKAPANQPLQSALK
                     HPGKTVLTYCLNEKMWNELFPNRHGRNIRNSKKAASDFYSFSAFLKAAGLFPEFLSGN
                     AITQKRELAAFLANIAQETSGGWAEAPGGYFAWGLYFVEEKQDSIKNTYADFSKKNYP
                     PVAGKSYFGRGPKQLSWNYNYGQFSEAWFGSKDSLLRHPEWLSENPVLSFASAIWFWM
                     TPQFPKPSCHDIMTGKWKPNANDLEKGRVPGFGATVNVINGGVECGNGINLDKTTYRY
                     QYYTYFCKYFHVSPGENISCSNQKPFGQ"
BASE COUNT          560 a          396 c          414 g          677 t
ORIGIN      
        1 aatgcttttt gaagccgcgg atctttgaaa aaccgttgga tataatcggt atgtttaatc
       61 catgttttca atcgtattaa tagcaatgtg cttttcagat tgataaactg aaagagatga
      121 tagaagttgc ggttcagcag accgtccatc gattggccaa agaaatcata cccttctttt
      181 acatactttt cgtagtgtgc aaaactgccg ggttcaatgg cttccagttg ctctttcatt
      241 cttgccggat ttcgggtgaa tgcaaagtca gtgccgtccc caaaaaataa tttgtagacc
      301 ggttcgagcg aagttgtttc cagttcttta tccatgtcga gcccaaatga agaaaatacc
      361 tggcggtaaa gtgatggcat caacagaatg gtggcgccta aatcgaaccg gtgtccattt
      421 tggataagtt gtccgcaacg gccgcccgca tttgcatttt tctcatatat atcaaccgaa
      481 tagccatttc tggcaaggag aagagcagtg gtaataccac ctactccggc tccaataatc
      541 accgctttca tttttgcgct cattgcttga ctcaaattat tatatcgaag tgcaaagata
      601 taaagaacag cggaaatgta aaaaaaatat gtatttttat tctgtatact tgtcaaaaag
      661 agtaacagga tgacttttgt ccatcctatt actcttttaa aatgattgtt tgatctattt
      721 tttattcttc aaaacaatgc tggaaattaa gatacaaatg aatatcaaag cgaatcctgc
      781 caagaagctt aatagagcat ccatattgag gcttctgata taaagtctct tagctaaaac
      841 tatcagtagg attaatgcta ttccaataat aggaataacc ggttttgata atttgttttt
      901 cataaagttg aaactttatg cttttttcaa cttcttctct ctcttttctt cctttttttc
      961 tttcggagtt ttaagaggct ctttcttttg cgttttcttc gcatcctggg attttgccat
     1021 ggttttagtt ttttaagtga gtatttatta tttaaagatt ttgctctaaa gtatgaggaa
     1081 acgcactgcc ttttgtaagc taaaacagtt tgttgcaaat ctgttgttcc gtttattgtc
     1141 caaaaggttt ttggttgcta caactgatat tttcgccggg ggaaacatgg aagtatttgc
     1201 aaaagtaggt ataatattga taacggtaag ttgttttgtc gagattaatg ccgtttccgc
     1261 attccacacc accatttata acgtttactg tggcgccaaa gccaggtaca cgtccttttt
     1321 cgaggtcatt cgcgttgggt ttccatttgc ctgtcataat gtcgtggcag gaaggtttgg
     1381 ggaattgtgg tgtcatccag aaccatattg cagaggcaaa tgacaaaacc ggattctcag
     1441 acaaccattc cggatgccgg agcaatgaat ctttagagcc aaaccacgct tcgctgaatt
     1501 gtccataatt gtaattccag ctcaattgct ttgggcctct gccaaaatag cttttgccgg
     1561 ctaccggagg ataattcttt ttgctaaagt ctgcgtacgt gttttttatg ctgtcttgtt
     1621 tttcctcgac aaaatagagt ccccatgcaa aatatccgcc gggagcttct gcccagccac
     1681 cgctagtttc ttgtgctata ttggccagaa atgccgctaa ctctcgtttt tgagtaatgg
     1741 cattaccgct cagaaattcc ggaaaaagac cagctgcttt cagaaatgca ctaaaagaat
     1801 aaaaatctga agcagctttt ttagaattcc ggatatttcg tccgtgccgg ttggggaaaa
     1861 gttcattcca cattttctcg tttaaacaat acgtgagtac agttttgccg ggatgtttca
     1921 gtgctgattg caacggctga tttgccggag ctttcggttg cgggacacaa ttcatggaca
     1981 aaaaggataa aatgataatt aagccatgtt tcatctgttg ctgtaatttg ttttgacaag
     2041 gttgtaa
//
LOCUS       DATDNM010000569         4302 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_179328, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000569 DATDNM010000000
VERSION     DATDNM010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4302
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179328"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..558
                     /locus_tag="VI413_09655"
     CDS             <1..558
                     /locus_tag="VI413_09655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEY6914928.1"
                     /translation="ICGNDAVLVTGLGPVGLAALMLAKAMGAQKLIGVDTVAERCQIA
                     KDLGLADEVFVSGPDVMEKVMAATNGLGFERTVDCSGHTSGRQLCIRATRQWGKMVMI
                     GEGGTVEFNPSPDIIHDQKTIYGSWVTTIWRMEELVERIERWGIHPEDLVTHRFQLDD
                     APEAYSLMAEGKCGKVAIVFDEEIK"
     gene            629..1633
                     /locus_tag="VI413_09660"
     CDS             629..1633
                     /locus_tag="VI413_09660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY6914929.1"
                     /translation="MQTIDASKVPFKTLYTGDKIPVIGLGTFGSDNYDAETIAQAVKT
                     AIKMGYRHIDCASVYGNEKEIGVALKEVIAEGIVTREELWITSKVWNDKHKQVVESCK
                     QTLVDLQLDYLDLYLVHWPFPNFHPPKCDVSTRQKDAVPYIHEDYMKTWAQMESLVDA
                     GLVRNIGTSNVTIPKMKLILRDARIKPAINEMEIHPHFQQPELYNYMKENGVEVIGYS
                     PIGSPGRPERDRTPEDTVDMEDPAIVAAAERLGVHPAVVCLKWAVQRGQITIPFSVKT
                     DKMFNNLKGITEGPLTDAEMEAIAKNDKGCRLIKGQVFLWEGAKGWEDLWDLNGEITA
                     "
     gene            1710..3245
                     /locus_tag="VI413_09665"
     CDS             1710..3245
                     /locus_tag="VI413_09665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004560 - alpha-L-fucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEY6914930.1"
                     /translation="MKNQTIKLLHLCIFSVLALSVAAQTDNLPIAPGKFKATDESLQQ
                     YQCPAWFRDAKFGIWAHWGPQAVPRQGDWYARNMYIQHGGSWETDAYNDHLKKYGHPS
                     VSGYKDIIPLWKAERWNPEALMKLYKSVGAKYFVSMGTHHDNFFLWNSQLHKWNSVNM
                     GPHKDVVGLWQQAAKKEGLRFGVSEHLAASYTWFQTAHKADKTGDKAGVPYDGNDPKY
                     AELYHGKADSTDTGWMTKNSVWQKEWFDRIKELLDMYKPDLLYSDCALPFGNEVGRSL
                     IAHYYNEDMAKNNGSLEAVYNCKEPSKGRFAQDVERGVLDSISKYPWQTDTSIGDWFY
                     RTGQKYKTANEVIQMLVDIVSKNGNLLINVVQTPEGDLEPDVLQILDGIGNWTKINGE
                     GIYGSRPWKVYGEGPSTGGNQEKGQFGGLKDVRGYQGTDIRYTTKDGNVYAFCMETPV
                     ENIKLKSLGKLSKYSDKKIAAVKMLGSKEKIKWNQTNEALVIEKPKKMSAYKVSAFCI
                     KFK"
     gene            3394..>4302
                     /locus_tag="VI413_09670"
     CDS             3394..>4302
                     /locus_tag="VI413_09670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6914931.1"
                     /translation="MSKHKLTTKENLVPFILVSSLFFLWGSAHGMLDVLNAHFQAVLK
                     ISKAESGLIQFSVYMAYFSIALPAGYFMRRFGYKKGIIAGLLLFSIGSFIIVPASINA
                     SFYLFLIGLFILGCGLATLETAANPYTTKLGDKDSAARRINFSQSFNGLAWIFGPIFA
                     TYFILGGEEGNTSGGLNSMIAPYAGIGIVVLIIAIIYMFVKLPEITEEDVEMAHGLSN
                     SGQSAPAKSLFKTKHLILGVIAQFCYVAAQTGVFSFFVNFLIAKEQHLDISKTTEGYM
                     LGLGGMSLFFIGRLSGSWFMQYFKPAK"
BASE COUNT         1285 a          819 c          981 g         1217 t
ORIGIN      
        1 atttgtggta acgatgcagt acttgtaact ggccttggtc cggttggatt ggctgctttg
       61 atgttggcaa aagccatggg agcgcaaaaa ctgattggcg ttgacaccgt agctgagcgt
      121 tgccagattg ccaaagacct tggtttggcc gacgaagttt tcgtgtcggg accagacgta
      181 atggaaaaag taatggctgc caccaacggt ttgggctttg aacgtactgt tgactgttca
      241 ggtcacactt caggtcgtca gctttgtatc cgtgctaccc gtcaatgggg taaaatggtg
      301 atgattggcg aaggtggaac agttgaattc aacccaagtc cggatattat tcacgaccag
      361 aaaaccattt acggttcgtg ggtaactact atctggcgca tggaggaatt ggttgagcgc
      421 attgagcgtt ggggcattca ccctgaagat ttggttacac accgtttcca attggatgat
      481 gctccggaag cttactcgtt gatggctgaa ggaaaatgcg gtaaggttgc catcgttttt
      541 gacgaagaaa tcaagtaaaa ttcaccattg aaccggagtc ggacattcgt cttgactctt
      601 ggttctaaca tctaaaaatc taatttacat gcaaacaata gatgcttcaa aagttccatt
      661 taaaacgctt tataccggcg ataaaatacc ggtaattggg ttgggaacat tcggttcgga
      721 caactacgat gccgaaacca ttgctcaagc tgtaaaaacg gctatcaaaa tgggctaccg
      781 tcatatcgac tgcgcgtcgg tttacggaaa cgaaaaagaa atcggtgtgg ctttgaaaga
      841 agtgattgcc gaaggaattg taacccgcga agaactttgg attacgtcca aagtatggaa
      901 cgacaaacac aaacaagtgg tagaatcgtg taaacaaaca ctggtcgact tacagcttga
      961 ttaccttgat ttgtacctgg ttcactggcc attcccgaac ttccacccgc caaaatgtga
     1021 tgtgagcacc cgccaaaagg atgctgtgcc ttacattcat gaagattata tgaaaacctg
     1081 ggcgcaaatg gaaagtttgg tggatgccgg tttggtgcgt aatatcggta cttccaatgt
     1141 gactattccg aaaatgaaac ttatcctgcg tgatgcccgt atcaaaccgg ctatcaacga
     1201 aatggaaatt cacccgcact ttcagcaacc cgaattgtat aactacatga aggaaaacgg
     1261 tgtggaagta attggttaca gtccgatagg ctcaccgggt cgtccggaac gcgaccgtac
     1321 tcccgaagat accgtggata tggaagatcc ggctatcgtg gctgctgccg aacgtttggg
     1381 cgttcatcca gccgttgtat gtctgaaatg ggctgtacaa cgtggtcaaa ttaccattcc
     1441 gttctcagtg aaaacagaca agatgttcaa caacctgaag ggaattaccg aaggtccgtt
     1501 gacagatgca gagatggaag ccattgcaaa aaacgataaa ggatgccgtc tgatcaaagg
     1561 tcaggttttc ctttgggaag gtgccaaagg ctgggaagat ctttgggatt taaacggtga
     1621 aataaccgca taattattcc tgaaaattct gagtttgaac ttcttcaaac tcagaattca
     1681 tttctgtttt actttagaat aaatacgtaa tgaaaaatca aactatcaaa ctacttcatt
     1741 tgtgcatttt ttctgttttg gctctttcgg ttgcagctca gacagataac ttacccattg
     1801 ctcccggtaa gttcaaagct accgatgaat ctcttcagca atatcaatgt ccggcctggt
     1861 ttcgcgatgc taaattcggt atctgggcgc attgggggcc gcaagccgta ccgcgtcagg
     1921 gcgattggta tgcccggaat atgtatatcc aacacggtgg aagctgggaa accgatgctt
     1981 ataacgatca tttgaaaaaa tacgggcatc cttccgtttc gggttacaaa gacattatcc
     2041 cattgtggaa agctgaacgc tggaatcccg aagccttgat gaagctatat aaaagtgttg
     2101 gtgctaagta ttttgtgagc atgggaactc accacgataa ttttttcctt tggaactcgc
     2161 aacttcataa atggaactct gtaaacatgg gtccgcataa agatgttgtt ggactctggc
     2221 aacaagcagc gaaaaaagaa ggattgcgtt ttggggtttc ggagcatctg gcagctagtt
     2281 acacctggtt tcagacagct cacaaagcgg ataaaaccgg ggataaagcc ggagtacctt
     2341 acgatggaaa cgatccaaaa tatgcagaat tatatcacgg caaggctgat tcgaccgaca
     2401 caggttggat gactaaaaat tcggtctggc agaaagaatg gttcgataga atcaaagaat
     2461 tactggatat gtataaaccc gatttgcttt attccgactg tgctttacct tttggaaatg
     2521 aagttgggcg cagccttatt gctcattatt acaatgaaga tatggctaaa aacaacggca
     2581 gtttggaagc cgtttacaat tgcaaggaac catcaaaagg tcgttttgcg caggatgtgg
     2641 agcggggagt tttggattct atcagtaaat atccgtggca gacagatact tctatcggag
     2701 attggtttta ccgcaccggt caaaaataca aaacagccaa tgaagtgatt caaatgttgg
     2761 ttgacattgt gagtaaaaac gggaatctgt tgattaacgt ggtgcaaacc cctgaaggcg
     2821 atttagaacc tgatgtattg cagattcttg acggtattgg taactggact aaaataaatg
     2881 gagaaggaat ttacggttca cgtccgtgga aagtatatgg cgaaggccca tcaaccggag
     2941 gaaatcagga aaagggacaa tttggtggac tgaaagatgt ccgtggatat cagggaactg
     3001 atattcgtta tacaacgaag gatggcaatg tctatgcttt ttgtatggaa actcccgtag
     3061 aaaatatcaa gttaaaatca ttaggcaaac tatctaaata ttcagataaa aaaattgcgg
     3121 cagtaaagat gctcggcagt aaagagaaga ttaaatggaa tcaaaccaac gaagcactcg
     3181 ttattgaaaa accgaaaaaa atgtctgctt ataaagtttc tgcattttgc attaagttta
     3241 aataatagta ttcataacca ttattctatg ctgtgcaaca tataaattct tgattccgat
     3301 ccgaaaaaat gaatctatat ttgcagcata gttcagcata gcgagacaaa caaagaaaca
     3361 acctttttat tatttaatat tatatattat atcatgtcaa aacacaaact tacaacaaaa
     3421 gagaacttag ttccttttat acttgtttcg tcgctctttt tcctttgggg aagtgcacat
     3481 ggaatgctgg atgtactaaa tgcacatttt caagcagttt taaaaatatc aaaagcggaa
     3541 tctggactta tccagttttc ggtgtatatg gcatatttct ccatagcatt acctgccggt
     3601 tattttatgc gtcgttttgg ttataaaaaa ggaataattg ccggtttatt gcttttttca
     3661 ataggctctt ttataattgt tcctgcatcc atcaatgcat ctttttattt gtttctgata
     3721 ggattattca tacttggttg cggtttggca accctcgaaa ctgctgcaaa tccttacaca
     3781 acaaaactag gtgacaaaga ttcggcagca agacgtatca atttttcgca atcttttaat
     3841 ggtttagcat ggatttttgg gccaattttt gccacttact tcattcttgg aggcgaagag
     3901 ggcaatactt cgggaggtct aaattctatg attgcacctt atgccggtat tggaattgtg
     3961 gtactgatta tcgccattat ttacatgttt gtaaaacttc ctgaaattac cgaagaagat
     4021 gtggagatgg ctcacggact gagcaattcc ggacaatcag cacccgctaa atcattgttt
     4081 aaaacaaaac atcttatact cggcgtaatc gcacaatttt gctatgtggc tgctcaaaca
     4141 ggggtgttta gcttttttgt caacttccta atagccaaag aacaacattt ggacatttcc
     4201 aaaactactg aaggttacat gttaggacta ggaggaatgt cgttgttttt tataggtcgt
     4261 ttgtcgggaa gctggtttat gcagtatttt aaaccagcca ag
//
LOCUS       DATDNM010000570         4055 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1139665, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000570 DATDNM010000000
VERSION     DATDNM010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4055
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1139665"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1566)
                     /locus_tag="VI413_09675"
     CDS             complement(<1..1566)
                     /locus_tag="VI413_09675"
                     /inference="COORDINATES: protein motif:HMM:NF014116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046556 - alpha-L-arabinofuranosidase
                     activity [Evidence IEA];
                     GO_process: GO:0046373 - L-arabinose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-arabinofuranosidase C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914932.1"
                     /translation="MKSKSNIFIFSLLLFLSQFAVSQSQFTLDLNKKGIAISPTHYGI
                     FFEDINHAADGGLYAELIRNRSFEDAATLENWTAFNQVGTTAVAAVETSGLLNSAQSQ
                     ALKLTVGSASASTRAGIYNTGFWGINVVTGRQYKLTFFAKCDANFTGTVKASLESSGG
                     VKYAEASVSGLTTGWQKFTLTLTAAGNDRNARFVLSTTSSGILWFDVVSLFPPTFNNR
                     ENGLRPELAQLLADMKPKFMRFPGGCFIEGDYLANRFQWKKTIGKIEERPGHYNLWAY
                     RTSDGMGYHEFLQLSEDIGAEPLYVANVGLAHNDNQPYTALTDYIQDVMDALEYANGA
                     VTTTYGALRAANGHPEPFNIKYIEIGNENYFGDNYGNRYIQFYNAIKAKYPTMQCIGN
                     VAAWGTDNPTWTFSHPVQLLDEHYYRSPQWFINQYNKYDTYSRTGPKIYAGEYAVTSG
                     CGYGNQIAALGEAVYMAGMEKNSDVVTMNSYAPIFVNVDDRKWNPDMIAYNASSVYCT
                     PSYYVQKLFATNIG"
     gene            complement(1776..3119)
                     /locus_tag="VI413_09680"
     CDS             complement(1776..3119)
                     /locus_tag="VI413_09680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914933.1"
                     /translation="MKKYVLISISAICIITLVAQKTLNIFKPDLSVLNIEVSAIDSLK
                     FSNNNVQLDIYKSDNSALNIPVSGIDSMTFTDSVSHQLPVISTSAVTSISYSTAQSGY
                     VIKSIGGTTIVEKGICWSTTSNPTTADNKIISNVFTPTAGLALTGLTAGSTIYIRAYA
                     TNSYGTSYGEQLTFPTLSYSLPVVETVSAVYNYTTNKATCLINVKSNGGCALTERGIC
                     WSTSRNPTISNTKYASGMTIGQFYALMSNLNLNSTYYVRGYATNCVGTGYGAELVVKP
                     LMGNVTYTLDIDPVANPEPYKLIKIAMDSACYYFNRYSTFRGNVYVYYNAGIPTAQAS
                     YHGSLGFGPNTRYQWVGTAIHEMCHYMGSGTTSAWQAKIVGGVWTGTTASSLLKTLTG
                     ETLKGDTQHFWPYGINQKEEITGLGGQAAQENGLATCVKLCKAMCVDDAKLPSSW"
     gene            complement(3116..3607)
                     /locus_tag="VI413_09685"
     CDS             complement(3116..3607)
                     /locus_tag="VI413_09685"
                     /inference="COORDINATES: protein motif:HMM:NF039201.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6914934.1"
                     /translation="MKLKLYYAFFFLIFFEIAFMPVQSQSVSLTIKNWDGTDKNVDLN
                     SLKKVTFSGANLVLNYLNGSNEDIAVSTVRKMFFGSYTDVNSILEDNKPVFIYPNPSS
                     NYISFKNVTVSNTNAIVYNINGTQVMTINLSSGIENIDVSALKKGIYLIKIDSQVLKF
                     TRL"
BASE COUNT         1271 a          788 c          743 g         1253 t
ORIGIN      
        1 accaatattc gttgcaaaca gcttttgaac gtaataagaa ggtgtacaat ataccgaaga
       61 tgcattgtaa gcaatcatat caggattcca tttccggtcg tcgacattta caaagatcgg
      121 cgcataggaa ttcatggtta cgacatctga gtttttttcc attccggcca tgtaaacagc
      181 ttctccaagg gctgcaatct gattaccata tccgcaaccc gaagttacag catattcacc
      241 ggcatagatt ttcggaccgg ttctgctata cgtatcatat ttattatatt gattaataaa
      301 ccattgtggg ctacgataat aatgctcatc caacaattgt accgggtgac tgaaggtcca
      361 cgttggatta tcggttcccc aggctgcaac gttcccaatg cattgcatgg ttgggtattt
      421 ggcctttata gcattgtaaa actggatata gcggtttccg taattatcgc cgaagtaatt
      481 ttcattaccg atttcaatat atttgatatt gaatggctcc ggatgtccgt ttgcagcgcg
      541 cagagctcca tatgttgtag taacagctcc attcgcatat tcaagagcat ccataacatc
      601 ctgaatataa tcggttaatg ccgtatatgg ctgattatcg ttgtgagcca gtcctacatt
      661 ggccacatac aatggttctg caccaatatc ttcagacaat tgcaaaaatt catgataacc
      721 cattccatct gaagtgcggt atgcccaaag attgtaatgt ccggggcgtt cttctatttt
      781 accaatagtt tttttccact ggaaacgatt tgccagataa tctccctcga tgaaacaacc
      841 accgggaaag cgcatgaatt tgggtttcat atcggccagc aactgagcca gttcgggacg
      901 taaaccattt tcacggttat tgaaagtggg tgggaataat gacactacgt caaaccagag
      961 tatcccggaa gaagttgttg ataacacaaa acgtgcatta cggtcgttac cagcggcagt
     1021 aagggttaag gtgaattttt gccaaccggt ggttaaccct gaaactgaag cttcggcata
     1081 tttaacccct ccgctacttt ccagcgaagc tttcactgtt ccggtaaagt tcgcatcaca
     1141 tttcgcaaaa aaagtgagct tatattgtcg tccggttaca acatttattc cccaaaatcc
     1201 agtattgtat attccggctc tggttgaagc agatgcactt ccgacggtaa gttttaatgc
     1261 ctggctttgg gctgagttaa gcaagccgct ggtttctact gccgcaacag ctgtggtacc
     1321 aacttgatta aatgctgtcc agttttcgag tgttgcagca tcttcaaaag atcggtttcg
     1381 gataagttca gcatacaaac ctccatcggc agcatgatta atatcttcga aaaagatacc
     1441 gtaatgcgtc ggactaatcg caattccttt tttatttaaa tcgagagtaa attgggattg
     1501 gctcactgca aactgagaca aaaaaagcaa aagagaaaaa ataaaaatgt tagatttaga
     1561 tttcatgatt tttaaattta cgaagtacaa ttaatcgtgt aaaattaatt tatttttatc
     1621 gcccttactt cctatatcac aggcaaatga gtggattatt attcaaattt tgaggacaaa
     1681 atctgaaata gcttagtacg tatctgaaag gaaactctcc tacaacaaat ctatgtgcag
     1741 gagagtttgt aaatcttttt tatattgaat aattattacc aacttgaagg taatttggca
     1801 tcatcaacac acatggcctt gcagagtttt acacaggttg caagtccgtt ttcctgggca
     1861 gcctgacctc caagtccggt aatttcttct ttttggttta ttccataagg ccagaaatgc
     1921 tgggtatcgc cttttaatgt ttctccggta agtgttttca acagagaaga tgcagtagta
     1981 cctgtccaaa cgcctcccac aattttggct tgccaggcag aagttgttcc ggagcccatg
     2041 tagtggcaca tttcatgtat agctgtcccc acccattgat acctggtatt agggccaaaa
     2101 ccgagagaac catgataact agcttgtgca gtcggaattc cggcattgta atacacataa
     2161 acattgcctc taaacgtcga atatctatta aaatagtagc aagcactatc catggcaatt
     2221 tttatcaact tgtatggttc cgggttagcc acggggtcaa tatccaaggt atacgtaaca
     2281 tttcccatta atggttttac gaccaactca gcgccataac cggttccaac acaattggtt
     2341 gcatatccgc gaacataata cgttgaattt aaattcaggt ttgacatcaa tgcataaaac
     2401 tgaccaatgg tcattccact tgcgtattta gtgttactaa ttgttggatt tctggaagtc
     2461 gaccagcaaa tacctctttc tgtcaaagca catccaccgt tacttttcac atttatcagg
     2521 caagtagctt tgttagtagt ataattatat acagctgaaa ccgtttcaac tacaggtaag
     2581 ctataactta atgtcgggaa tgtcagttgt tcgccatacg aagttccata actattggta
     2641 gcataagctc tgatataaat agttgagcct gcagttaatc cggtcagagc caggcctgct
     2701 gtaggagtaa agacatttga aataatttta ttatcagccg tagttggatt tgaggttgta
     2761 ctccagcaaa ttcctttttc gacaatagta gttccaccaa ttgattttat aacatatccg
     2821 gactgagctg ttgagtacga aattgatgta actgcagaag tacttattac cggcaattga
     2881 tgcgaaacac tatcggtaaa agtcatgcta tctatacctg acaccgggat attcaacgca
     2941 gaattatcag atttataaat atccaactgt acattattgt tactgaattt caaactgtcg
     3001 atggccgaaa cttcaatatt caacacagat aagtcgggtt tgaaaatatt gagtgttttt
     3061 tgagcaacta aagtaataat acagattgca cttatgctaa tgagtacgta ttttttcata
     3121 atcgggtgaa ttttaaaacc tggctgtcaa ttttaattag atatattcct ttttttaaag
     3181 cacttacatc aatattctca ataccagaag aaagattgat tgtcataacc tgagtaccgt
     3241 taatattgta cacaattgca ttggtattgc ttacggttac atttttaaac gaaatataat
     3301 tagaagacgg attgggataa atgaaaacag gtttattatc ctctaaaatg ctgtttacat
     3361 ctgtgtatga tccaaaaaac attttacgaa ccgttgaaac tgcaatatct tcgttactcc
     3421 cgttcagata attcagcaca agattagccc ccgaaaaagt aacctttttc aatgagttta
     3481 aatcaacatt tttgtcagtt ccgtcccagt tctttatggt gagcgaaaca ctttgagatt
     3541 gaacgggcat aaaggcaatc tcaaaaaaaa tgagaaagaa aaatgcgtag taaagtttta
     3601 atttcatatg cttcaaaatt taagattaga gccataaaac catgtaataa ttattcaggg
     3661 aacattttgc gatacaagtc agcgtcgact tcaactgaat caaaaaacac tttattcgac
     3721 taatccttat tacctcctga tttgtcgagc aaagataatc gaaaataaaa aatgtttggg
     3781 ggacaaataa atcaaaaacg aggaaattcc atttttataa tgctgtgata tttacctaaa
     3841 aagaaacaat atatcaaata gttataaagt acgaaaggct aaaagaatat tgcatcatta
     3901 acaggataat atggatttgg aaaatcctcc accttattga acgaattata tactaacaat
     3961 acattttcag ctattatttt tgtatagttg attttttacc cattttcaat ctgttcgaaa
     4021 cactgattac aaaataacaa ccagctatta tttaa
//
LOCUS       DATDNM010000571         2201 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_712335, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000571 DATDNM010000000
VERSION     DATDNM010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_712335"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            127..1014
                     /locus_tag="VI413_09690"
     CDS             127..1014
                     /locus_tag="VI413_09690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914935.1"
                     /translation="MKNVTFFKTIILTVALAIVTIPGISQILVAGWDFQTTENGGTAI
                     DFPPLTPDVIIANFGTGTLYLDGTNGSSKWNKTIPENEISAYSSCYHFPVSGFSPETS
                     GAASLGLLGGTNGSASGKHIVFKFSMTEKSNLIVKFLMQRNQTGFISQSWDYSTDCIT
                     WTHFKTITDLPLYDFEPVKLDTIKGLDNAETAYLRMSPEGATDAEAYNKIDNVQLYAN
                     VSVLLNTPVAKTSETNISISNGIIKFNAKERKQVEIFNAIGQKLISTQTTEGLNTIPV
                     SAKGMVIIKIDNRISKVIL"
     gene            1353..1898
                     /locus_tag="VI413_09695"
     CDS             1353..1898
                     /locus_tag="VI413_09695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914936.1"
                     /translation="MKTNIPEGIKQTVEQWYLSCREKASGMPTVAILHIHTDYTLIAS
                     GQEATPENIWLLEIGSEKTSQEFFKHNPPTPGEVEEAIQTVEDEVMLLSKLLPAGSAL
                     YTADTAIRQIALQKDNAENKSEIVLSRPDMEQIFGRLAAIISGRPAGSDSLPTDNAFA
                     ATLLILREVMFHLKFTEIKIA"
     gene            1936..>2201
                     /locus_tag="VI413_09700"
     CDS             1936..>2201
                     /locus_tag="VI413_09700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018107424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEY6914937.1"
                     /translation="MKTKNVILKSLFGVISLFTFNSCIGIPKGATAVTPFDKEKYLGT
                     WYEIARFDFRFERDLNNTTANYSINTDGSIKVVNRGYNYKTREW"
BASE COUNT          763 a          410 c          405 g          623 t
ORIGIN      
        1 atattttcag gggtaccatt ccattaccaa gtttgaacga atctgcacat tataaaattg
       61 tagatattcc aagtgaacct tttcaatagt ttacacatat attttaacca atcaaaaatc
      121 aacaaaatga aaaatgttac cttttttaaa acgatcattc ttacagttgc attagcaatt
      181 gttaccattc caggcattag tcaaatatta gttgcaggct gggattttca aaccaccgaa
      241 aatggcggaa ccgccattga tttccctcca ttaactcccg atgttattat tgcaaatttc
      301 ggcacaggga cattgtatct tgatggtaca aatggctcaa gtaaatggaa taaaacaata
      361 cccgaaaatg aaatttcagc ttattcaagc tgctatcatt ttccggtatc cggtttttca
      421 ccagaaacat caggagcggc ttctctgggt ttacttggtg gaactaacgg ctcagccagt
      481 gggaaacaca tcgtctttaa attctcaatg accgaaaaat ccaatcttat tgtaaagttt
      541 ctgatgcaaa ggaatcaaac cggttttatt tcccaaagtt gggattatag tacagattgt
      601 attacatgga cacattttaa aactattaca gatttaccac tgtatgattt tgaacctgta
      661 aagctggaca caataaaagg gcttgataat gccgaaacag cgtacttgag aatgagcccg
      721 gaaggtgcaa ctgatgctga agcatacaat aagatagaca atgttcaact ttatgccaat
      781 gtgtcagtat tattaaacac gccagttgca aaaacttcgg aaacaaatat ttcaatttca
      841 aatggaatta tcaaattcaa tgcaaaggaa agaaaacaag tagaaatttt caatgctatt
      901 ggtcaaaaac tgataagtac acagaccact gagggtttga acacaattcc ggtttctgca
      961 aaagggatgg taataataaa aatagataac cggatttcga aagtaattct gtaatcatta
     1021 gtttattctg tttcgtgcaa atggaatatg caggaagtac aggtttaccg ctaagtctgg
     1081 cagaaacatg gaatcactat caagtaaagc ttttaaaact atttaaaata acattttgtt
     1141 ttgcactacc actcctgcgc acgtgaagtc ccgggggtgg ttttttattg atcaaaaagg
     1201 ctcaaattaa gaattattta tacctttgcc tgtataacgt tattcttcaa caagacatga
     1261 aaaataaatg aacccaatcg atgaacagaa acgtcagttt catcgtttgg atacttaatt
     1321 gataataaaa acagaaagaa aaggtccaac atatgaagac gaatatacct gaaggaatta
     1381 aacaaaccgt tgaacaatgg tatctttcct gtcgtgaaaa agcgtctgga atgcctacgg
     1441 tggcaatact tcatatacac actgactata ccctgattgc atccggacag gaagctactc
     1501 ctgaaaatat atggttactt gaaattgggt cggagaaaac atcacaagag ttcttcaagc
     1561 ataaccctcc aacacccggt gaagtggaag aagctattca aacggtggaa gatgaagtta
     1621 tgctgctgag taaactttta cctgccggtt cggcacttta tacagccgat acagctatcc
     1681 ggcaaattgc gttacaaaaa gacaacgctg aaaacaaatc agaaatagtg ctttcccgcc
     1741 cggatatgga acaaatcttc ggacggttgg cagctatcat ttcagggcgg ccagccggta
     1801 gcgatagttt gccaaccgac aatgcattcg cagctacgct tttaattttg cgcgaagtaa
     1861 tgtttcattt gaagtttact gaaataaaaa ttgcttagaa ataaaaactg aataaaacct
     1921 taaaaaacaa ttcttatgaa aacaaaaaat gtaattttaa aatctttgtt cggggtaata
     1981 agcctcttta cctttaattc ctgcataggc attcctaaag gtgccacagc tgtaactcct
     2041 ttcgataaag aaaaatacct gggtacgtgg tatgaaattg cccgctttga ttttcgtttc
     2101 gagcgtgatt tgaataatac aacagccaac tattcaatca ataccgatgg cagcataaag
     2161 gttgtaaacc gtggctataa ctataaaacc agggaatgga a
//
LOCUS       DATDNM010000572         2353 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_820079, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000572 DATDNM010000000
VERSION     DATDNM010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2353
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_820079"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1599)
                     /locus_tag="VI413_09705"
     CDS             complement(<1..1599)
                     /locus_tag="VI413_09705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914938.1"
                     /translation="MEALKIMEKQIHFSLPPGDENRKKKAQKMVAFILILAMFNLTLG
                     CHSYFKVNTVRQPTTEKVVSLNEVQKTIIVHFNEKKWLLTDVVVKNNTVSGQLNEYTM
                     PPTIKKVNPERPNRYYTAQSKSQRYLLNEVHLYINEYADLGNSQISIPVGSISKLEIY
                     DPDTATTVGSWLLGALFVTASAMALALIIIILTKESCPFIYTWDGIKYNFQGEIYSGS
                     IHKQLERHDYLKLSGYAGDNLYTLKITNEVQEIQHTNLMELMVVDHPQNITVLADKYG
                     IISTIKKPVAPSLVESEAGVNVTDQLLAKDKLFYQSNPPKDQKPLKDYLILDFPASKN
                     SKEAKLVIHAKNSILLDYMMGEYNKLFGTEYNKYMKKLEKNSTDKMKQWSLSQGIPLS
                     VYVERAGNWEFVDYYNVAGPMAFKDDVLKVPLKGNESDPLKLKLEFGAFLWEIDYAAV
                     DYSADQKLTTNLVSVKTAITEENKDVAGLLKQNDANYYTQPVTTNQAVVTFDLPQQTN
                     QSRTIILHTKGWYQILHNPEGEMDM"
     gene            complement(1612..>2353)
                     /locus_tag="VI413_09710"
     CDS             complement(1612..>2353)
                     /locus_tag="VI413_09710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914939.1"
                     /translation="TKLPMFLTLVLICSVQISAQDVIFKRTGELVKAKILNQIGSAIS
                     YRYYDNRDSLTYYISTSIIDSIIYQSGTKDIFTKSAIVESHSFEPLTPVYKHSLIGVD
                     LADILLFSKIGVSYEYLPGKMTVGFKAAFEKDLKNLYYYSTDSNNGFTNWNLQLGVDF
                     YIFPPRTFRLGAGLHYVFTQYNYSDYIGSTYVNTIKNAHGVMLTLFGFYNLNKNWAVN
                     FGFDIPFSNISYQYSLPSWIKCEIMYNF"
BASE COUNT          730 a          443 c          402 g          778 t
ORIGIN      
        1 catatccatc tcaccttccg gattatgaag gatctgatac cagccttttg tatgaagaat
       61 tatcgttcga ctctggtttg tttgctgagg caaatcgaaa gtcaccacag cctgattagt
      121 cgttacaggc tgagtataat aattcgcatc attctgcttc agcaaaccag ccacatcttt
      181 attctcttca gttatggcag tttttacaga aaccagattc gttgttagtt tctgatctgc
      241 agaataatca acagccgcat aatctatttc ccacaagaat gctccaaatt ccagtttaag
      301 tttaagcgga tccgactcat tgcctttgag cggaacttta agaacatcat ctttaaatgc
      361 cattggtcct gcaacattat aataatcgac aaactcccaa ttccctgccc tttcaacata
      421 tactgaaagt ggaattccct ggcttagcga ccactgtttc attttatcgg tagaattctt
      481 ttccagcttt ttcatgtatt tattatattc tgttccaaac agtttattat actcacccat
      541 catatagtca agtaaaatcg agtttttggc atgaataacc aactttgctt cttttgaatt
      601 tttgctggct ggaaaatcaa gaatcaggta atcctttaat ggtttttggt ctttgggtgg
      661 attgctttga taaaaaagtt tatcctttgc aagcaattga tctgtaacgt ttactcctgc
      721 ttcactttct accaacgatg gtgcaacagg ttttttaatg gtagaaataa tgccatactt
      781 atcagccaac acagttatat tttgaggatg atcaacaacc atcaactcca tcaaattggt
      841 atgctggatt tcctgcactt cgtttgtaat tttaagtgta tataaattat caccggcata
      901 tccagaaagc ttcaggtaat catgcctttc aagttgttta tgaatgctcc cgctatatat
      961 ctcaccctga aaattatatt tgatcccatc ccaggtatag ataaacgggc acgattcttt
     1021 tgtaagtata ataattataa gtgcaagcgc catagctgaa gccgtgacaa atagcgctcc
     1081 taaaagccac gatccgaccg tagtggcagt atccggatca taaatctcta atttggaaat
     1141 tgatccaacc ggaatggaaa tctgactgtt accaagatca gcatattcat taatataaag
     1201 gtgaacctca ttaagcaggt atctctggct ttttgattgc gcagtatagt agcgattagg
     1261 tctttcaggg tttacctttt taatggttgg tggcatagtg tattcattta gttggcctga
     1321 cacagtattg tttttaacta caacatcagt caataaccat tttttctcat taaaatgaac
     1381 aataatggtt ttttgaactt cattcaggct caccaccttt tcagttgtgg gttgtctaac
     1441 tgtatttact ttaaaatagc tatgacaacc taaggtcaga ttgaacatgg ccagaataag
     1501 aataaaagca accattttct gagctttctt tttccgattt tcatcccctg gtgggagtga
     1561 aaagtgtatt tgtttttcca taatctttaa ggcttccata aagtgttgtt tttagaaatt
     1621 atacattatt tcgcatttta tccaacttgg taatgaatat tgataagaaa tatttgagaa
     1681 aggaatatca aaaccaaaat tgacagccca gtttttattc aaattataaa aaccaaaaag
     1741 agtcaacatt acgccgtgtg catttttaat tgtatttaca taggtagaac cgatataatc
     1801 agaatagttg tattgggtaa aaacataatg aaggcctgct ccaagacgaa aagtccttgg
     1861 tggaaaaatg taaaaatcca caccgagctg taagttccaa ttggtgaatc cattattcga
     1921 atcagtcgaa taataatata gattctttaa atctttttca aaagcagctt taaatcccac
     1981 tgtcattttt ccaggcaagt actcgtacga aacaccgatt tttgaaaata aaaggatgtc
     2041 cgccaaatca accccaatta aactatgctt gtaaaccgga gtcaaaggtt cgaaagaatg
     2101 agattcaacg atggcactct tagtaaaaat atctttggta ccgctttggt aaataatgct
     2161 atcgattata ctggtagaaa tgtagtacgt taaactgtct ctgttatcat aatagcgata
     2221 agaaatagct gatccaattt gattcaggat ttttgcttta acgagttcgc cggttcgttt
     2281 gaaaatcaca tcttgtgcag aaatttgaac agaacaaatc agcacaagcg ttaaaaacat
     2341 gggtaatttt gtt
//
LOCUS       DATDNM010000573         4609 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1354063, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000573 DATDNM010000000
VERSION     DATDNM010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4609
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1354063"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VI413_09715"
     CDS             complement(<1..252)
                     /locus_tag="VI413_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY6914940.1"
                     /translation="MKKLHVFIVVYLVLFQLLAFASKPFRFALFTDTHISTINPIPTE
                     DLRNAVADVNSLQNVDFVLVDGDVSNLGDTTSLLEAKRLL"
     gene            complement(425..973)
                     /locus_tag="VI413_09720"
     CDS             complement(425..973)
                     /locus_tag="VI413_09720"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEY6914941.1"
                     /translation="MGTSYIYKRDASRLFIALRENGKRYKIYIPKESRPVIDGVEQDI
                     DFVEQEDFHYAFDWNGKRFHCELVSRDQNKAVIKVNGVEYKFSLESLFSYIRHGMIDK
                     DGKQIDENNIVAPMPGKIVDIFLSEGDLVNEGEPILSLEAMKMQNEISANCNGVIRKI
                     RVQNGQSVMKDELLVEISSIDE"
     gene            complement(977..2473)
                     /locus_tag="VI413_09725"
     CDS             complement(977..2473)
                     /locus_tag="VI413_09725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HEY6914942.1"
                     /translation="MKKRLLIANRSEIAIRIIRAAHKLGMLAVVFQSDREPDALYLKY
                     ADEIIPARDAANEKPIFLDPERIVNLALEHNIDLLHPGYGFLSENPDFAQLCVENGIN
                     FIGPSPELIRDMGLKTVAKSMAIKAGLPLVPGSDGAITDAEAAKAFADKIGYPVILKA
                     SAGGGGRGMRIVEKAETIERNFKSASDEALAAFGNGDMFIEKYLQNPKHLEFQIMGDK
                     HGNVVHLGERECSLQRKHQKILEEAPSASVTPEMRKEMGDMAVRFAKSIGYYSAGTIE
                     FIMDEDGSYFFMEMNTRIQVEHPVTEMITGVDLVDWQIRVALGEELTLKQEDVQIKGW
                     AIECRVNTEDPQNRFSPQTGFIDRIHFPQDKTIRIETGVQSGSVVTPYFDSMIAKIIV
                     HGTDRADVIKKTLAALYEFSLIGLKTTVPFCRTVLQHPEFVNATYTTRWVDSVFTPEM
                     LENEEDEMIGALAATIMYASEYLQLSSDLPTYKSDSLNVWVLNKRLNY"
     gene            complement(2619..4154)
                     /locus_tag="VI413_09730"
     CDS             complement(2619..4154)
                     /locus_tag="VI413_09730"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEY6914943.1"
                     /translation="MNKNEVFEQRLKALQELEDNAATRQHLKGKLTARERINVLFDEG
                     TFFEFDAFVAPSQTPMSSKTANFGDGVVVGRGLVQGRSVFAYAQDFTVLGGSLGYAHG
                     MKIAKVQEMALKLGAPIVGLMDSGGARIQEGVKSLSAYATIFRNNVKSSGIVPQISAI
                     LGPAAGGAVYSPALTDFIFMTNQTSYMFVTGPDVVKEVLNEDIDMEGLGGGNVHAAKS
                     GVSHFVSDDEEHTIMLIRKLLSYIPSNNYEPHPVSNLVSSYQSRQEFLDKIIPDDPNR
                     PYDMKEIINIIVDKDSFFEVHEKFAQNILVGFARLNGKTIGIVANQPKVMAGTLDINA
                     SVKGARFVRFCDAFNIPLLIMEDVPGFLPGIEQEHNGIIRNGAKLLYAFCEATVPKIT
                     IITRKAYGGAYIVMSSKNTGGDFNFAWPTAEIAVMGPAGAIKIVNKHELANAENRAEL
                     EKTLIDRYKNEIANPYKAEEFGLIDEVITPSDTREILITSFEILSNKQYSKPARKHGS
                     IPL"
     gene            complement(4378..>4609)
                     /locus_tag="VI413_09735"
     CDS             complement(4378..>4609)
                     /locus_tag="VI413_09735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY6914944.1"
                     /translation="QQKGVTIAQIALAWLLHQPVVSTIIIGAKKEEQLLDNIKAADVK
                     LTVDELAKLNEASKLTPEYPGWMIERQSGDRK"
BASE COUNT         1378 a         1021 c          810 g         1400 t
ORIGIN      
        1 gagtaagcgt tttgcctcaa gcagggaagt tgtatcaccc aaattagaca catctccatc
       61 aacaagtaca aagtcgacat tctgaagtga gtttacatca gcaacggcat tgcgtaagtc
      121 ttctgtagga attggattga tagttgaaat gtgcgtatct gtaaacagtg caaaccgaaa
      181 tggtttcgaa gcaaaagcaa gtagctggaa taaaaccaaa taaacaacaa taaatacatg
      241 cagttttttc attcgtatac taaaatgaag ttatttatat gctcgaaaat ggttttaatt
      301 ttagagtgac aaagatacaa cagcttaagg aattttgcac cagtaaaagc taaaagtttt
      361 tacaaaaaat ggagctaacc taattataaa aggttgctcc attttaaaat ttacaagtat
      421 ttttctattc gtcaatagaa ctaatctcca ctaacaattc gtctttcata accgattgtc
      481 cgttttgtac acgaatttta cgaataacac cgttacaatt agccgaaatt tcgttctgca
      541 ttttcatggc ttccaggctc agaattggtt caccttcatt taccaaatcg ccttccgaga
      601 ggaatatatc cacaattttt cccggcattg gcgcaacaat attattctcg tcaatttgct
      661 tgccgtcttt atcaatcatt ccgtggcgaa tataagagaa aagcgactcc aaactgaatt
      721 tgtattcaac accgtttact tttattactg ctttgttctg gtctcgcgaa accaactcac
      781 aatgaaaacg ttttccattc caatcgaatg cataatgaaa atcctcctgt tccacaaagt
      841 caatatcttg ttcaacgccg tcaataaccg gtcttgattc tttcggaata tagattttgt
      901 atcgcttgcc attctcgcgc aaagcaataa acaatcgcga agcatcgcgt ttataaatat
      961 atgaagttcc catgttttag tagtttaatc ttttattcaa tacccataca ttcaacgaat
     1021 cgcttttgta ggtaggcaaa tcggacgaaa gctgaagata ttcagaagca tacatgatag
     1081 tagctgctaa agcaccaatc atttcatctt cttcattttc gagcatttca ggtgtaaaaa
     1141 ccgaatccac ccagcgggta gtataagttg catttacaaa ttccggatgt tgcaatacgg
     1201 ttctgcaaaa cggaacggtt gttttcaatc caatcaggct gaattcgtac aaagcagcca
     1261 atgttttctt gatcacatct gccctatcag ttccatgaac aataattttg gcgatcatcg
     1321 aatcgaaata cggtgtcacc actgagccac tttgcacacc agtttcaatg cgaatagttt
     1381 tatcctgagg aaaatgaatc ctatcaataa atccggtttg tggactgaaa cgattctgag
     1441 gatcttccgt attcacacgg cattcaatag cccaaccttt tatctgaaca tcttcctgtt
     1501 tcaacgtaag ttcctcaccc aatgcaacac ggatttgcca gtccaccagg tcaactccgg
     1561 taatcatctc tgttaccgga tgttccacct gaatacgcgt gttcatttcc ataaagaaat
     1621 acgaaccatc ttcatccatt ataaactcaa tggttccggc cgagtaataa ccgattgatt
     1681 tggcaaagcg gacagccata tcgcccattt ccttacgcat ttcaggcgta acgctggccg
     1741 aaggagcttc ttccagaatt ttttggtgct tgcgttgcaa cgagcattcg cgttcgccca
     1801 aatgaaccac atttccatgc ttatcaccca taatctggaa ctccaggtgt ttcggatttt
     1861 gcaggtattt ttcaataaac atatctccgt ttccaaaagc agccaacgct tcatcagatg
     1921 ccgatttgaa attacgttct atggtttctg ctttttctac aatacgcatt ccacgtccac
     1981 cacctccggc cgaagctttc agaataaccg gatagccaat tttatcagca aaggctttgg
     2041 cagcttcagc atcagttatt gcaccatcac ttccaggaac caaaggcaat ccggctttga
     2101 tagccatgct tttcgctacg gttttcagcc ccatatcgcg aatcagttcg ggcgaagggc
     2161 ctataaaatt aatgccattt tccacacaaa gttgtgcgaa atctggattt tcagacaaga
     2221 aaccatatcc ggggtgaagc aaatcaatat tatgctcgag agcaagattc actatacgtt
     2281 ccggatccaa aaaaattggt ttttcattgg cagcatcacg tgccgggata atttcatctg
     2341 catacttcaa ataaagagca tccggctccc tgtcactttg aaaaactaca gccaacatac
     2401 ccaatttatg agcagcgcga ataatgcgaa ttgctatttc gctccggttg gcaattaaaa
     2461 gtcgtttctt cattctttat attgttatta gccgtcggcg taattacttc gtgatattta
     2521 ctcacttcgt ttgtactatt agccttaggc gatattttca atcttaaatt cttggcaagc
     2581 taagcggcaa gccgattagt aaatgattaa atcgtaaatt aaagtgggat acttccgtgt
     2641 ttacgtgccg gtttagaata ctgtttgttt gacaggattt caaaagaagt aatcagaatt
     2701 tcgcgggtgt ccgatggagt aattacttca tctatcaatc caaactcttc tgctttatat
     2761 ggatttgcaa tttcattttt atacctgtca ataagcgttt tctctaattc agccctgttt
     2821 tcagcgtttg ccaattcatg tttgtttaca attttgatag ctccggcagg tcccattact
     2881 gcaatttcgg cggttggcca tgcaaagtta aagtcgccac ccgtattttt actgctcatc
     2941 acaatatatg caccgccata agctttacgg gtaataatag tgattttagg aacggtagct
     3001 tcacagaatg catacagcaa ttttgctccg ttacggataa ttccattgtg ctcctgttca
     3061 ataccgggca ggaatccagg aacatcttcc ataatcagca atgggatatt aaatgcatcg
     3121 cagaaacgca caaaacgtgc accttttacg ctggcgttaa tatccagcgt tccggccatc
     3181 actttgggct gattggccac aataccaatg gtttttccat tcaaacgggc aaaaccaact
     3241 aggatattct gggcaaattt ttcatgaact tcaaagaaag aatctttatc aacaataata
     3301 ttgataattt ccttcatatc atatggtcgg ttgggatcgt cgggaataat cttatccaga
     3361 aactcctgac gcgactggta tgagcttacc agattagaaa ccggatgcgg ctcataattg
     3421 ttagatggaa tgtatgacaa caatttacgg atcaacataa tggtatgctc ctcgtcgtcg
     3481 gaaacaaaat gcgacacacc actttttgct gcatgcacat tcccaccacc aaggccttcc
     3541 atatctatat cttcattcaa tacttccttt acaacatcag gaccggttac aaacatgtag
     3601 gaggtctgat tagtcataaa aataaagtct gtcaatgcag gtgaatacac agctccgcca
     3661 gcagcagggc caagaatagc cgaaatctga ggaacgatac cagaagattt cacattattt
     3721 ctgaaaatag tagcataagc cgataaactc ttaacgccct cttgaatacg tgcaccaccc
     3781 gagtccatta aacccactat gggtgcgcca agtttcagtg ccatttcctg cactttggct
     3841 attttcatac cgtgtgcata acccaaagac ccacccaaca cggtgaaatc ctgagcgtaa
     3901 gcaaaaacac tgcgcccctg aaccaagcca cgtccaacca caacaccgtc tccgaagttt
     3961 gcggttttac tactcattgg agtttgggaa ggagctacaa aagcatcaaa ttcaaaaaaa
     4021 gttccttcat caaaaagaac atttatacgt tcacgtgcgg taagtttacc ttttaaatgc
     4081 tgtctggttg cagcattgtc ttccaattct tgcagcgcct tcagacgctg ctcaaatact
     4141 tcgtttttgt tcattacttt agctggaatt atttcatttt ttttaatgca atgtttttct
     4201 gataaactct aacagtttaa tttaaatttc gttcaaattt atattaaata caagaaaaga
     4261 gtgcacaaaa gtagtaaatt tgtgcaaaca gcaaatatgt agttgatata aatccgaaac
     4321 gttaacacaa aaaatatatt gttgggattg caaaaaatga gattaaatct tgtcttctta
     4381 tttgcggtcg ccactctggc gctcaatcat ccaacctgga tattcaggag tcaacttgct
     4441 agcttcattt aatttagcca attcatcaac agtaagtttc acatctgctg cctttatatt
     4501 atccaatagt tgctcttctt ttttagcacc aataataatg gtacttacta caggttgatg
     4561 caatagccat gctaaagcaa tttgagctat agttacacct ttttgttga
//
LOCUS       DATDNM010000574         2386 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_72299, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000574 DATDNM010000000
VERSION     DATDNM010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72299"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..865)
                     /gene="ald"
                     /locus_tag="VI413_09740"
     CDS             complement(<1..865)
                     /gene="ald"
                     /locus_tag="VI413_09740"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007844305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000286 - alanine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HEY6914945.1"
                     /translation="MIIGIPKEIKNNESRVALTPGGAKTLVMNGHSVYVETHAGENSG
                     FSNEQYQKAGAQILPTAEAVFAIAEMIMKVKEPIKSEYKLIRPNQLIFTYFHFASEKE
                     LTLAMMESAAVCLAYETVERADRTLPLLIPMSEVAGRMSIQEGAKYLEKPKGGKGILL
                     GGVPGVKPANVLVLGGGVVGTQAAIMAAGLGAHVTIADISFPRLRYLSEIMPANVDTL
                     MSSASNIEDMLPQTDLVIGAVLIPGAKAPHLITREMLKLMQPGSVLVDVAIDQGGCFE
                     TSHPTTHADPVY"
     gene            complement(1194..2201)
                     /locus_tag="VI413_09745"
     CDS             complement(1194..2201)
                     /locus_tag="VI413_09745"
                     /inference="COORDINATES: protein motif:HMM:NF025420.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4249 domain-containing protein"
                     /protein_id="HEY6914946.1"
                     /translation="MKTNYISFILMLGLALLFHSCEKEIEFSGEITKPMLVINSFITP
                     DSVIKVHLSKSKFFLEDNTTFEMVNNANVNVWVNGSKVEKLTNTGEGYYLSSFKPLLG
                     DIIKITAETSDMSEVSTVTEIVQPNPIISVDTLNHQFKEYPMVSYSSTNNGPYIADTM
                     GLTKIESFGIKVKFNDPSTASNYYRLEAKVINYYDDGSVLIGSGAINYNDIVFGGNNN
                     SSLFETSGYNYYHEFSDELFNGKEYNLNLTFNRITDTYKPEYQDMYHEINVKTPVKQE
                     LRIELQSISKSYFLYLRSRAANMSAVEFFSEPVQIYSNVTGGIGILGSYSSSVYILNL
                     K"
BASE COUNT          673 a          437 c          458 g          818 t
ORIGIN      
        1 cgtaaaccgg atcggcatgg gtggtggggt gcgaagtttc gaaacatcca ccctgatcaa
       61 tagcaacatc aaccagcaca gagccgggtt gcataagttt tagcatttcc cgggttatga
      121 ggtgcggagc ttttgctccg ggaattaata cagctccgat taccagatcg gtctgcggca
      181 gcatatcttc aatatttgat gcactggaca ttaatgtgtc aacgttagca ggcataattt
      241 cgctcaggta gcgtaatcgt ggaaatgaga tgtctgcaat ggtaacatga gcgcccagtc
      301 cggcagccat tatagctgct tgagttccaa cgactccgcc acccaatacc aatacatttg
      361 ccggttttac tccgggaacg cctcccaaca gaattccttt gccgccttta ggtttttcaa
      421 ggtattttgc accttcctga atagacatgc ggcctgccac ttcggacata ggaatcagca
      481 atggcagtgt gcgatcggct ctttcgacag tttcgtaagc caggcaaacg gcagcacttt
      541 ccatcatggc cagtgtaagt tctttttcgg aggcgaaatg aaaataggtg aagataagct
      601 ggttgggacg gatcagttta tattcgcttt ttattggttc ttttaccttc attatcattt
      661 ccgcaatagc gaacacggct tcggctgtgg gaagtatttg tgcaccggct ttttgatatt
      721 gctcgttgct gaatccgctg ttttcgcctg catgtgtttc tacatacaca gaatggccat
      781 tcataacaag tgtttttgcg cctccgggag tcaaagccac gcgactttca ttgttcttga
      841 tttcttttgg aattccgatt atcataatct taagtattta aatggaatag tttttaactt
      901 gcatttaaaa caacaaattt tatataattg ttgttgaaaa cgtcgtaaaa atacaagatt
      961 aattttaaac tgaaacaaaa taatgaataa attattatta gaaatgcatt ttatttgtaa
     1021 tgtgtttata ttcagttgtt acatgttttg taaaactgtt acaacatatt gatttatgac
     1081 ttgaattctg cctgtaaatc tgttttttct gctcataatt caactaaaaa cgtccggtat
     1141 ttcaatttta ctttcaaatt gaaataccgg acgggaagtg taagctaaat aagttacttt
     1201 agatttaata tatacaccga acttgaatag cttcctaaaa ttcctattcc gccagtcaca
     1261 ttactgtaaa tctgaacagg ttctgagaaa aattcaactg ccgacatatt ggccgctctg
     1321 cttctgaggt ataggaaata tgatttggag atgctttgaa gctctatgcg cagttcttgt
     1381 ttaacaggag ttttcacatt tatttcatga tacatgtctt gatattctgg tttgtaagtg
     1441 tctgtaattc tgttgaatgt aaggtttaga ttatattcct tgccattgaa taactcgtct
     1501 gagaattcat ggtaatagtt atagccgctt gtttcgaaaa gacttgaatt attgtttcca
     1561 ccgaaaacaa tatcgttgta gtttattgcg ccagacccaa ttaacacact gccatcatcg
     1621 tagtaattta taacttttgc ttccagtcta taataattag atgcagttga aggatcgttg
     1681 aatttgactt taattccaaa actttcaatt tttgtaaggc ccattgtatc agcaatatat
     1741 ggcccgttgt tggttgaaga atacgatacc attggatatt ccttgaattg atgattcaat
     1801 gtatctacac tgattatagg attaggctgc acgatttctg taactgttga aacctcgctc
     1861 atatcacttg tttctgcagt tatttttata atatcaccta atagaggttt gaagctactt
     1921 aaataatatc cttcgccggt attggtcagt ttctctactt ttgagccatt tacccataca
     1981 tttacattgg cattatttac catttcgaaa gtcgtattgt cctccaaaaa gaatttactc
     2041 tttgatagat gtacttttat taccgaatcc ggtgtgataa agctgtttat aacaagcatt
     2101 ggctttgtga tttcgcccga aaattcaatc tctttttcgc aggaatgaaa taaaagggct
     2161 aatccaagca ttaaaataaa cgatatataa tttgttttca ttttgtgttc aggtttaaat
     2221 tagaatttat atgaatagct tactgatgga atgaaagtga aaatggtgat ttgcttcaaa
     2281 acttttctcg atggctccag catagttgag ttattagtat atacgtattc atactctgtt
     2341 gacgggtaaa tcaggaacgg attcattcgg ttataggcat tgtaga
//
LOCUS       DATDNM010000575         5964 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_606718, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000575 DATDNM010000000
VERSION     DATDNM010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5964
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_606718"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VI413_09750"
     CDS             complement(<1..490)
                     /locus_tag="VI413_09750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005936984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEY6914947.1"
                     /translation="MTELEQLFHQYTNQKPQNVIELSASGSNRKYFRLKSDKITLIGV
                     EGTSIEENRAFIAMSKHFSAKGLPVPKVLAETADGKFYIQDDLGDTLLFDFIAGGRKT
                     GVFAESEKEMLRKTMRKLPAIQVLGAKGFDFSVCYPQPEFNERSILWDLNYFKYCFLK
                     STG"
     gene            705..1682
                     /locus_tag="VI413_09755"
     CDS             705..1682
                     /locus_tag="VI413_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEY6914948.1"
                     /translation="MNPILIYIVTQILKFQNRKKKKPNKIIRFDYSDKTVLNTATEVS
                     HYFYDILFILLAVVSATFGLKSFLLPNSFIDGGVTGISLITTELTNIPLSVLLVLINI
                     PFLLLAFSTVGKQFAIKSIIAILLLALSVHFIPFGAVTDDKLLIAVFGGFFLGLGIGL
                     AIRGGSVIDGTEVLAVFISRRTILTIGDVVLIFNIIIFSVAAYVFSINIALYAILTYF
                     TASKTVDFVVSGIEEYIGVTIISEKSEEIRLTIIEKMGRGCTLYFGKKGFSKRGEPLK
                     ETDIVYTLLTRLELSKLQVEVDKIDKDAFIIMHSIKDAKGGMIKKRPLE"
     gene            1899..3629
                     /gene="lysS"
                     /locus_tag="VI413_09760"
     CDS             1899..3629
                     /gene="lysS"
                     /locus_tag="VI413_09760"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008861150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEY6914949.1"
                     /translation="MMSTELSEQEQFRRQSLDELRNLGIDPYPAALYPTDAFSTDIKA
                     EFKDEESGKPVCIAGRIMSRRIMGKASFIELQDSKGRIQVYISRDDINTEAQPEMYNT
                     VFKKLLDIGDFIGIKGFVFRTQMGEISVHAQELTVLSKSLRPLPIVKYKDGVAYDAFE
                     DPEQRYRQRYVDLVVNEGVKDIFLKRTKVYQSMRDYFNAEGYIEVETPILQSIPGGAS
                     ARPFITHHNALDIPLYLRVADELYLKRLIVGGFEGVYEFSKNFRNEGMDRTHNPEFTA
                     MEIYVAYKDYNWMMTFTENMIEKICMDVNGTNEITVGDKTISFKTPFKRITMIDAIKE
                     HTGIDINGMDEVQLREVCKQLHIEADETMGKGKLIDEIFGEKCEGNYIQPTFITDYPR
                     EMSPLCKRHRDNPELTERFELMVNGKELANAYSELNDPIDQLGRFQEQLKLSEKGDDE
                     AMFIDMDFVRSLEYGMPPTSGMGIGMDRLVMLMTGQQAIQEVLFFPQMKPEKVAKKDG
                     PEKFMELGIPEAWVAVVQKAGIVMAADLKGLNPNKFHQDICGLNKKHKMELTNPSKED
                     VAAWIAEAEK"
     gene            3646..4341
                     /locus_tag="VI413_09765"
     CDS             3646..4341
                     /locus_tag="VI413_09765"
                     /inference="COORDINATES: protein motif:HMM:NF016190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM44-like domain-containing protein"
                     /protein_id="HEY6914950.1"
                     /translation="MERKRIKTAIIFAGCMLISIDTFAVSHSLYFGNSDFLLSNKPEA
                     WFGRIIVILVLISAVTSLVFLKSAITDRIIGRSAMYDPIWNVEELKSHARNLFFNLSK
                     ALNNRDISSLTSALTPELYQKQQTIISELVENKQINILKNIDIQVLEIVGCEDRKEDS
                     KDKYIVYFEGRILDYTILESTREIIKNSRRIISDFSCTYHFVRIENEWKLEQINDSVN
                     RLDILKTKTVLEE"
     gene            4437..5435
                     /locus_tag="VI413_09770"
     CDS             4437..5435
                     /locus_tag="VI413_09770"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005861487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_process: GO:0006072 - glycerol-3-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEY6914951.1"
                     /translation="MINEKSKIAVIGGGSWATAIAKIALTNADSINWYMRRQEQIDEF
                     IRLSKNPSYLTGVKFDTDRIHFTSDINKLVRTSDILIFATPSPFVKQHLKKLKRKLDR
                     KFIVSAIKGIVPDENMIVTDYFEQMYDVPKNNIAVLAGPCHAEEVALERLSYLTIACA
                     SREKARLLAQRFTTSFIRTSISDDVLGIEYSSVMKNIYSIAAGICHGLKYGDNFQAVL
                     ISNAIQEINRFCNATNPLHRDINEPAYLGDLLVTAYSKFSRNRLFGTMIGKGYSVKTA
                     QIEMEMIAEGYYATKCIHEINEKYQVSMPIVDSVFEILYNRCSPTMEIRKLSEKLK"
     gene            5487..>5964
                     /locus_tag="VI413_09775"
     CDS             5487..>5964
                     /locus_tag="VI413_09775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEY6914952.1"
                     /translation="MKNIKLSIDKAFGFVSEQSVAGYKAEVAAAIAALHNGTCKGSDF
                     LGWLNLPTSIDEAQFADLEATAKVLRDNCEVVVVIGIGGSYLGAKAVIDALSNSFDWL
                     QTERKSPIVVYAGQNIGEDYLYELQELLKTKKFGIISISKSGTTTEPALAFRLLKTQ"
BASE COUNT         1954 a         1175 c         1181 g         1654 t
ORIGIN      
        1 accctgtaga tttgagaaaa caatatttga aataattcaa atcccacaaa atagaacgct
       61 cattaaattc cggttgcgga tagcaaaccg aaaaatcaaa cccttttgct ccgagtactt
      121 gaatggcggg aagtttacgc atggtcttac gcaacatttc cttttcactt tccgcaaata
      181 cacctgtttt gcggccacca gcaataaaat caaaaagcaa tgtatcgcct aaatcatcct
      241 gtatgtaaaa cttaccatca gcggtttcag ccaacacttt cggcactgga agccccttag
      301 ccgaaaaatg cttcgacatg gcaataaacg cccggttttc ttcgatggaa gtgccttcaa
      361 caccaattaa ggttatttta tcacttttta atctaaaata cttccggtta gaaccggagg
      421 cagaaagttc aataacgttc tgtggttttt ggttggtata ttgatgaaaa agttgttcta
      481 attcggtcat attctgttat tgatgggatt aattgtaaaa ttatcgcaaa gatacaaaca
      541 tcattttaaa actccggtaa tggtccgttg gaaatatctt cattcgttct attaaaaagc
      601 atatttcaaa atgcatcaac accaatcaaa attacctgct aacatcctta taagtcgatt
      661 tatatcgcta tatttgcaaa tataattaac taacacaata acttatgaat cctatattaa
      721 tctacatagt tacccagata ttgaaatttc agaacagaaa aaagaagaaa cccaataaaa
      781 taattcgttt tgactattct gataaaaccg tacttaatac agcaactgaa gtttcacatt
      841 atttttatga catattgttc attctgcttg ctgtcgtttc cgcaacattc gggctgaaaa
      901 gttttttgct gcccaattcc tttattgatg gtggtgtaac cggaatatca ctgattacaa
      961 ccgaacttac aaatatcccg ttatcagtgc tgctggtttt aattaacatc ccatttcttt
     1021 tgctggcatt ttccactgtc ggtaagcaat ttgccattaa aagtattata gccattttgc
     1081 tgttggctct tagcgttcat ttcatacctt tcggtgcagt aacagacgac aaactgctca
     1141 tagcagtttt tggaggtttt ttccttgggt taggcattgg gttagccatc cgtggaggct
     1201 cagtgattga tggaactgaa gtgctcgctg tatttatcag ccgccgcacc atactaacaa
     1261 ttggcgatgt ggttttaatt ttcaacataa taatattcag cgtggcagct tacgttttta
     1321 gtatcaatat agctctctac gcaattctga cttacttcac ggcttcaaaa acagtggact
     1381 ttgtggtttc cggaatcgaa gaatatattg gggtaaccat tatttctgaa aaaagcgaag
     1441 agatacggct taccataatt gaaaaaatgg gtagaggttg tacgctttac ttcggcaaaa
     1501 aaggattttc gaaacggggc gaaccactca aagaaacgga tattgtttac acactgctca
     1561 cccgcttgga actttcaaaa ctccaagtgg aagtggataa aattgacaaa gatgctttta
     1621 tcatcatgca cagcattaaa gatgcaaaag gcggaatgat taagaaaagg ccattggaat
     1681 aatagactca aaaccaagat caatttaagt tgattgactt tggtttaaat tgttggtttg
     1741 gagtaaattt taattattgg taaaaatgct cattgaaatc tatcctaaaa tttacaactc
     1801 gaaccgcgtg gtagttaata gacaatcgta aattgcatat ttgtaagcat atttcatcct
     1861 ttttttgtac ttttgcaaca attttgtata taaaaaagat tatgagcaca gaactaagtg
     1921 aacaagaaca attcagacgc cagagtctgg acgaattacg caatttaggc attgatccct
     1981 accctgccgc cctgtaccca accgatgcat tttcgaccga tataaaagct gaatttaaag
     2041 acgaagaaag cggaaaaccc gtttgcattg ccggccgtat catgagccgc cgcatcatgg
     2101 gaaaagcctc attcattgaa cttcaggatt ctaaaggccg tatccaggtg tacatcagcc
     2161 gcgacgacat taacaccgaa gcgcaacccg aaatgtacaa taccgtattc aaaaagctgt
     2221 tggatattgg tgattttatc ggaataaaag gattcgtgtt ccgcacccaa atgggcgaaa
     2281 tcagtgttca cgcacaagag ctgaccgtgc tcagcaaatc gcttcgaccg ctacctatcg
     2341 ttaaatacaa agacggcgtg gcttacgatg cattcgaaga ccccgaacaa cgctaccgcc
     2401 aacgctacgt agaccttgtg gtaaacgaag gcgtaaaaga cattttcctc aaacgtacca
     2461 aagtatatca gtcgatgcgc gattatttca atgccgaagg atatattgag gtagaaactc
     2521 cgattttgca atctattccc ggcggtgctt cggcacgtcc gtttatcaca caccacaacg
     2581 cgttggacat cccattatac ctgcgtgtag ctgatgaatt gtatttaaaa cgcctgattg
     2641 ttggtggttt cgaaggtgta tacgagttct ccaaaaactt ccgcaacgaa ggtatggacc
     2701 gtacgcacaa tccggaattt accgccatgg aaatatatgt agcctacaaa gactacaatt
     2761 ggatgatgac tttcaccgaa aacatgattg aaaaaatctg tatggatgtg aacggcacaa
     2821 acgaaatcac ggttggcgat aaaaccatta gcttcaagac tcctttcaaa cgtatcacca
     2881 tgattgatgc tatcaaagag cacactggta tcgatatcaa cggcatggac gaagtgcaac
     2941 ttcgcgaagt gtgcaaacaa ctgcacatcg aagccgatga aactatggga aaaggcaaac
     3001 tgattgacga aattttcggc gaaaagtgcg aaggaaacta tattcaacct acttttatca
     3061 ccgattatcc gcgcgaaatg tcgccgcttt gcaaacgtca ccgcgacaat ccggaactga
     3121 ccgaacgttt cgaattgatg gtaaacggaa aagaattagc aaacgcctac tcggagctga
     3181 atgacccaat cgatcagttg ggacgttttc aggagcaatt gaaactgagt gaaaagggtg
     3241 acgacgaagc catgtttatc gatatggatt ttgtgcgctc attggaatat ggcatgcctc
     3301 caacttcagg tatgggtatc ggaatggacc gcctggtaat gcttatgacc ggccagcaag
     3361 ccattcagga agtgcttttc ttccctcaga tgaaacctga aaaagtggcc aagaaagatg
     3421 gacctgaaaa attcatggaa cttggaattc ctgaagcctg ggtagccgtg gttcaaaaag
     3481 ccggaattgt aatggcagcc gatctgaaag gactgaaccc aaacaaattc catcaggaca
     3541 tttgcggatt gaacaaaaag cataaaatgg aattgaccaa cccttcgaaa gaagatgtgg
     3601 cagcttggat tgcggaagct gaaaaataga atctaaacgg tatcaatgga aagaaaaagg
     3661 attaaaacag caataatttt tgcaggttgc atgctgattt ccattgacac ctttgccgtt
     3721 tctcactcat tgtactttgg gaattctgat ttcttattat caaacaaacc cgaagcctgg
     3781 tttgggagaa ttattgttat acttgttctt ataagtgcag ttacaagcct ggtttttcta
     3841 aaatctgcca ttacggatag aataatagga agaagtgcca tgtatgatcc tatttggaat
     3901 gtagaagaac ttaaatcaca tgccaggaat ctgtttttca atctgagcaa ggctttgaac
     3961 aatagagata tcagttcact tactagtgct ttaacacccg aattatatca aaagcaacaa
     4021 acaattattt ctgaactagt tgagaataaa cagataaata tcctaaaaaa tattgacatt
     4081 caggttctcg aaattgttgg atgtgaagat cgaaaagagg attctaaaga caaatatatt
     4141 gtctattttg aaggaagaat actggattac actattttgg agtccaccag agaaattata
     4201 aagaattcaa gaagaattat atctgatttt tcctgcacct atcactttgt aaggatagag
     4261 aatgaatgga aattagaaca aataaatgat tcagtaaaca ggctggatat tctaaaaaca
     4321 aaaacagttc ttgaggaata gtttcctgtt tcgggaacaa acatttactc ataaaccgat
     4381 aattttctat agcttttaaa aaaacatgtc ttaaaagcta aaaaggaagg aacaaaatga
     4441 ttaacgaaaa aagtaaaatt gctgtaattg gcggcgggag ctgggccaca gcaatagcta
     4501 aaattgcact tactaacgca gacagtatca attggtatat gcgccgacag gagcagattg
     4561 atgagttcat acgtctaagc aaaaatccat cctatctgac cggagtgaaa tttgacaccg
     4621 accgcattca ttttacgagc gacattaata aattggttcg cacatcagac attctgattt
     4681 ttgctacacc atcgccattc gtgaaacaac acctcaaaaa attgaaacga aaactggaca
     4741 gaaaatttat cgtttcggcc attaaaggga ttgttcctga tgagaatatg attgtaacag
     4801 attattttga acaaatgtac gatgttccca aaaacaatat tgctgtactt gccggaccat
     4861 gtcatgctga agaagtagca ctggagcgtc tctcctattt gactattgcc tgcgcctcgc
     4921 gcgaaaaagc ccgcttattg gcacaacgtt ttacaacaag ctttatccga acttctatca
     4981 gcgacgatgt ccttggaatt gaatattcat ccgtaatgaa gaatatttat tctattgcag
     5041 ccggtatttg ccacggattg aaatacggcg ataattttca ggcagtactg atttcaaatg
     5101 ccatacagga aatcaatcga ttctgtaatg ctacaaaccc actccaccgc gacattaatg
     5161 agcctgctta cctgggcgac ttattagtca cggcctattc taaattcagc cgcaaccgct
     5221 tgttcggaac aatgatagga aaaggttatt cggttaaaac tgcccagatt gaaatggaaa
     5281 tgattgctga agggtactat gccacgaaat gtattcacga aataaacgag aaatatcagg
     5341 tcagtatgcc aattgtggat tcggttttcg aaatcctcta caaccggtgc tcaccaacga
     5401 tggaaatccg gaaattgtcc gagaaactga agtaggttaa ataagctgat aaataacacg
     5461 aagtaaaaac atcaaattat tataaaatga aaaatattaa attatctatc gacaaagcgt
     5521 ttgggtttgt atccgaacaa agtgtagccg gatacaaagc agaagtagct gctgctatcg
     5581 cggctttgca caacggcaca tgcaaaggaa gtgatttttt aggttggttg aatttaccaa
     5641 catcaattga cgaagcacag tttgctgacc ttgaagctac tgcaaaagta ctccgtgaca
     5701 attgcgaagt ggttgttgtt atcggtatcg gaggaagcta ccttggtgca aaagcagtta
     5761 tcgacgcact atctaacagc ttcgattggt tgcaaaccga gcgcaaatca ccaatagtgg
     5821 tttatgcagg acaaaacatt ggtgaagatt acctgtacga actacaggaa ctgttgaaaa
     5881 ccaaaaaatt tggtatcatc tctatctcaa aatcgggaac aactaccgaa ccagcgttgg
     5941 ctttccgttt gttgaaaaca caac
//
LOCUS       DATDNM010000576         2211 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_500172, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000576 DATDNM010000000
VERSION     DATDNM010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2211
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_500172"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..1177)
                     /gene="rfbG"
                     /locus_tag="VI413_09780"
     CDS             complement(104..1177)
                     /gene="rfbG"
                     /locus_tag="VI413_09780"
                     /EC_number="4.2.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009292649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047733 - CDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glucose 4,6-dehydratase"
                     /protein_id="HEY6914953.1"
                     /translation="MNIDIYHNFYRGKRVLITGHTGFKGSWLAIWLHKLGAEVIGLAL
                     DPFSDRDNYVLSGIQDKIIDLRGDIRNRQLIKDVFQKYQPEIVFHLAAQPLVRLSYDI
                     PVETYEVNLMGTIHVMEAIRVTEGVKVAVMITTDKCYENREQIWGYRENEAMGGWDPY
                     SSSKGAAELAIASWRRSFFHSNKYATHGKSIASVRAGNVIGGGDWALDRIIPDCIRSL
                     EAYKPIDIRNPKAIRPWQHVLEPLSGYMILAQKIWNEPTKYCDAWNFGPHAESIATVW
                     EVATKVIANYKSGELRDLSTPGGLHEAKLLMLDITKAKFQLGWEPRLNIDETVKLTVD
                     WYKRYKNENVFELCVEQIQKFVE"
     gene            complement(1260..2033)
                     /gene="rfbF"
                     /locus_tag="VI413_09785"
     CDS             complement(1260..2033)
                     /gene="rfbF"
                     /locus_tag="VI413_09785"
                     /EC_number="2.7.7.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007835541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047343 - glucose-1-phosphate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate cytidylyltransferase"
                     /protein_id="HEY6914954.1"
                     /translation="MKAVILAGGMGTRLSEATHLIPKPMVEIGGKPILWHIMKTYSHY
                     GINEFIICCGYKGYVIKEYFANYLRHNSDITVDLINDSIEVLDYHEEFWKITLIDTGL
                     NTQTGGRIKRIQKYLGNEPFLLTYGDGVADLNIQETIDLHNASGKVLTVTAYKPSGKF
                     GALDISQDGNVNSFMEKPAGDGHWVNAGYFICQPEIFDYIPEGDNVMFESLPLETIAK
                     EGEMAAFKHNGFWKPMDTLRDNIELNEMWDKGEAPWKVW"
BASE COUNT          675 a          504 c          318 g          714 t
ORIGIN      
        1 ccaaaaaagt cgtaattaaa ctgtttctga aaactacctc tattatcagt aaaatttaca
       61 gtctccaata gcaacaatcc ttcaagcggc gttctaatta ttttcattca acaaattttt
      121 gtatttgttc tacacaaagc tcaaacacat tttcattttt ataccgttta taccaatcta
      181 cagttaattt cactgtttca tcaatattta atcttggttc ccagcccaat tgaaactttg
      241 cttttgtaat atctaacatc agcaattttg cttcgtgcaa gccaccgggg gtagacaaat
      301 cacgtaattc accgcttttg taattagcaa taactttagt cgcgacctcc catactgtag
      361 ctatagattc tgcatgaggc ccaaagttcc aagcatcaca atacttagta ggctcattcc
      421 atattttttg agccaaaatc atataaccgc ttaatggttc caatacatgt tgccacggac
      481 gaatagcttt cggatttctg atatcaattg gcttataggc ttccaatgac ctgatacaat
      541 ccgggataat acggtctaat gcccaatctc ccccacctat tacattacct gcacgtacac
      601 tggcaatcga tttaccatga gtagcgtatt tattagaatg aaaaaacgaa cgtctccagg
      661 atgcaatagc tagttcagcc gctcccttcg aagatgaata aggatcccat cctcccatag
      721 cttcattttc gcgatacccc catatctgct ctcggttttc gtaacattta tcagtcgtaa
      781 tcataactgc aactttcaca ccttctgtaa cacgaatagc ctccataaca tgaatagtac
      841 ccattaaatt gacctcatag gtctccaccg gtatatcata agacagccgc actaaaggtt
      901 gagcagctaa atggaacaca atttcaggtt ggtatttttg aaaaacatct ttgatcaatt
      961 gtctattccg gatatcaccg cgcaggtcaa taattttatc ttgaatacca gaaagcacat
     1021 aattatcccg gtcgctaaat ggatccaacg caagccctat tacttcagct ccaagtttat
     1081 gaagccagat agccaaccat gagcctttga agccggtatg tcctgttata aggactcgct
     1141 ttccgcgata gaagttgtgg taaatatcaa tattcatata aaaacagata aaaatgagac
     1201 tattgacgca ttaaaattac ttttgtactt aaattacttt tactaaccga caaccaaatt
     1261 caccatactt tccagggggc ttccccttta tcccacattt catttagctc tatattgtct
     1321 cgtaatgtat ccataggttt ccaaaaacca ttgtgtttaa aggctgccat ttccccctct
     1381 ttagcaattg tttcgagtgg taaactttcg aacataacat tatcaccctc gggtatataa
     1441 tcgaatattt caggttgaca aataaaataa ccggcattta cccagtgccc atctcctgct
     1501 ggtttttcca taaacgaatt tacattgcca tcttgtgata tatccaacgc tccaaattta
     1561 ccactgggtt tataggctgt aactgtaagc actttacccg aagcattatg taaatcaatt
     1621 gtttcctgta tatttaaatc agcaacacca tcaccatacg taagcaggaa tggttcattt
     1681 ccaagatatt tctgtattcg cttaatacgt ccacctgttt gggtattcaa tcccgtatct
     1741 atcaatgtaa ttttccagaa ttcttcatgg tagtcaagta cttctatact atcatttatc
     1801 aaatcgacag taatatcact gttgtgtctt aagtagttgg caaaatattc tttaatgaca
     1861 taccctttat aaccacagca aataataaat tcattgatac cataatggct ataggttttc
     1921 ataatatgcc acagtattgg ttttccacca atttccacca tgggtttcgg aattaaatgg
     1981 gtggcttcac tgagtcgtgt gcccattccg cctgctaaga taactgcctt cattttatat
     2041 acgattttta gtcagactta caaccaatct aaaataatca atgattccaa atacgaaaat
     2101 ttgcacgagt cacacacatc gctatttcca tctataaatc agccatttaa attcattttt
     2161 acaacaaact cattcagcac attttctgta taattaaaca tttccctggt t
//
LOCUS       DATDNM010000577         3732 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_500238, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000577 DATDNM010000000
VERSION     DATDNM010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3732
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_500238"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1138)
                     /locus_tag="VI413_09790"
     CDS             complement(<1..1138)
                     /locus_tag="VI413_09790"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY6914955.1"
                     /translation="MKRILFLFLSLSVFLVGCKDEPSETEQLNKYVNEWVYQNMEGLY
                     YWNTSLPAFRSSTESPNDYFKTLKNKDDRFSAIFESYQDILNQLNGVSSSEIGFDFQL
                     YTESQFNENVLGVVLYVKHGTPAEGMGIKRGDIFRKINGTQITVNNYSTVIDYLFDNS
                     TSSNVTFSVYKNGAFTDNAPVTVKKAVNYNENPVYLDTVYTVQNKKVGYLVYHFFTND
                     PGDKSLKYDLELNNAIGRFKQQNITELVVDLRYNHGGMMSSAVRLASMLVPNLTTNKV
                     FSYTEYNQNYTNYFNSAEFKSQTTENPFVNNFATTIDVAATTATTASYPVQNVGGNLQ
                     RIFFLTGRGTASASEMVINGLKPFLPCVLIGDTTVGKNVGSTLVN"
     gene            complement(1393..2133)
                     /locus_tag="VI413_09795"
     CDS             complement(1393..2133)
                     /locus_tag="VI413_09795"
                     /inference="COORDINATES: protein motif:HMM:NF021501.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2225 domain-containing protein"
                     /protein_id="HEY6914956.1"
                     /translation="MKKQTLIIGLILLFFINAKATTWGESKHICPICKTNNKFQDIMS
                     YGGYIYSWPSKYQYVYWPLTDSESVYCCLKCHYSTFMWDFDSIPVNKIESLKLFLETV
                     KLDRKYKNYIDIPITTRLEIAGNVYKIIGKDSEFWCKFFRVIGYHYDAEKNTVKAKES
                     RLTSLDSAKKMLADSLYCGQEKEILYILASMHNFIGQKDSALLFLEQANSKTYHNKNW
                     EDKNNKGLNDYLTKLIIEYKDLIKNSSK"
     gene            complement(2374..3441)
                     /gene="rsgA"
                     /locus_tag="VI413_09800"
     CDS             complement(2374..3441)
                     /gene="rsgA"
                     /locus_tag="VI413_09800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020046538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEY6914957.1"
                     /translation="MKLEDFGYNDKLETIRIESGLSDFEIGRVIAEHKERYIVKTENG
                     EFEAEITGNLRFSAQSRVDFPAVGDWVALTTYDSNFSIIHKTLPRFSIITRQAVGQFG
                     EIQIIATNIDYAFLIQAVDRDFNINRLERYLTICYSSKVKPIIVLTKTDLIDEQKTVE
                     ITDSIKQRIKDILVFSISNETRDGYEALKKIIEKGKTYCMLGSSGVGKSTLLNNLSGR
                     TLMKTDTISQSTNKGRHITSHRELIVLESGGILIDNPGMREVGIADTTGGLETTFDRI
                     ISLSQKCKFKDCTHTNEIGCSVLETVEKGEIDKGSYENYLKMEREKAHFNSTIEERRK
                     KDKEFGKVIKNYKKDMKKNKF"
BASE COUNT         1023 a          717 c          662 g         1330 t
ORIGIN      
        1 cgttcacaag tgttgaaccc acatttttac ccacggtagt atcgccgata agcacgcagg
       61 gcaggaatgg tttcaggccg ttgatgacca tttcgcttgc cgaagcagta ccacgtccgg
      121 tgaggaagaa aattcgttgc aggttccctc ctacattctg taccgggtat gatgctgtag
      181 ttgcagtagt agcagcaaca tctattgtgg tagcaaaatt atttacaaat ggattttcgg
      241 tagtctggct tttaaattcg gcgctattaa aataattggt ataattctga ttgtactctg
      301 tatacgaaaa cactttgtta gtggttagat tcggaacgag catacttgcc aggcgaactg
      361 ccgacgacat catacctccg tggttgtaac gtaaatcaac aacaagttct gtgatatttt
      421 gctgcttgaa ccgtccaatg gcattattca gttccaaatc atatttcaac gatttgtcac
      481 cggggtcgtt ggtaaaaaag tgataaacca gatagcccac ttttttattc tgtacggtat
      541 aaacagtgtc caggtaaacc gggttttcgt tgtaattaac cgcctttttt acagttacag
      601 gagcattgtc ggtaaaagcg ccattcttat aaactgaaaa cgtaacgttc gaactcgttg
      661 aattgtcgaa caaatagtca attacagtac tgtaattgtt tacagttatt tgtgtgccat
      721 taattttccg gaaaatatca cctcgcttga tacccattcc ctcggcaggt gttccatgtt
      781 ttacatacaa aacaactcca agtacattct cattgaactg gctctcagta tacaactgaa
      841 aatcgaatcc gatttcggaa gaactaaccc cattcagttg gtttaaaata tcctgatagc
      901 tttcgaaaat tgccgaaaag cgatcgtctt tattttttag tgttttgaaa taatcgttgg
      961 gactctctgt gctgctccga aaagccggaa gtgaagtgtt ccagtagtat aagccttcca
     1021 tattctggta gacccactca tttacatact tgtttaattg ttcggtttca gaaggttcgt
     1081 ctttgcaacc caccagaaat acgctcaggc tcaaaaagag aaaaagaatt cgtttcataa
     1141 aaataatttg ttttttattg gttatatgaa acgagtttcg ttccatgttt gtatgtaagt
     1201 aaaattcagt attgatttac ttgcccctaa cgacctaagc ttgggcattt ggcggtttgc
     1261 aggagcattc gatgtccgtt agctaacgga caaagtgaat tgaaaatcag cgaagctaat
     1321 gcgggctcaa caaccactaa atactcgtca gccagccaat gaacgaggcg tgtgttagcg
     1381 gttcgttgtt ttctattttg agctattttt aataaggtct ttatattcaa ttattagctt
     1441 tgtcaaatag tcgtttagcc ccttattatt tttgtcttcc caatttttat tgtgataagt
     1501 tttagaattt gcttgttcta aaaatagcaa tgcactatct ttttgtccta tgaaattatg
     1561 cattgaagca agtatataaa gaatttcttt ttcttgtccg caataaagag agtctgctaa
     1621 catttttttt gccgaatcta gtgacgtcaa tcttgattct ttagctttta ctgtattctt
     1681 ttcggcatca taatgatatc caataactcg aaagaatttg caccaaaatt ctgaatcctt
     1741 gcctattatt ttatatacat ttcctgcaat ttcaagtcgt gttgtaattg gaatatcaat
     1801 atagttctta tattttctgt caagtttaac cgtttctaaa aataatttga gtgattcaat
     1861 tttgttcact ggaatgctgt caaagtccca catgaatgtt gaatagtggc atttaagaca
     1921 acaataaaca gattccgaat ctgtcaatgg ccaataaaca tattgatact ttgatggcca
     1981 actatatatg taaccaccat aactcattat gtcttggaat ttattatttg ttttgcaaat
     2041 tgggcatata tgtttcgatt caccccaagt tgtagctttc gcgttgataa aaaataacaa
     2101 tatcaatccg ataatcaatg tttgtttttt catggtttta tttttctaac aatgaccgct
     2161 aacgaccgag gcttgggcat ttggcgggat gcgggcgtat tcgctatccg ttagctgacg
     2221 gacaaagtga attgaaaatc agcgaagcta atgcggagca acaaccgcta aatgcacgtg
     2281 agccagccaa tgggcataga gcgtgtgtta gcggttcggt gtttggttat attatcagtt
     2341 tttcttcaat ttggtcgtgt tataatttgg agcttagaac ttgtttttct tcatatcctt
     2401 tttataattc ttaatcactt ttccaaactc tttatctttt tttcgtcttt cttcaattgt
     2461 tgaattaaaa tgtgcttttt ctcgttccat ttttaggtag ttttcatagg aacctttgtc
     2521 aatttctcct ttttcaacag tttcaagaac tgaacaacca atttcgttgg tgtgagtgca
     2581 atctttgaat ttgcactttt gagaaagact gataattctg tcgaaagttg tttctaatcc
     2641 gcctgtagta tcagcaattc ccacttctct cattcccgga ttgtcaataa gaattccacc
     2701 actttcaaga acaattaatt ctctatgact tgtaatgtgt cttcctttat ttgtgctctg
     2761 gctaattgta tctgttttca ttaaagttct tcctgaaagg ttgttcaaca atgtagattt
     2821 tccaactccc gaagaaccaa gcatacaata tgtcttaccc ttttcgataa tctttttaag
     2881 tgcttcgtat ccatctctcg tttcattact aattgaaaaa actagaatgt ctttaattcg
     2941 ctgtttaatg ctgtcagtta tttctacagt cttttgttca tctattaaat cagttttcgt
     3001 cagtacaatt attggtttta ctttagacga ataacaaatg gtcaggtatc tttcaagtcg
     3061 gttgatatta aagtccctgt caacggcttg aatcagaaat gcgtaatcaa tatttgttgc
     3121 tattatttgt atctctccaa attgaccaac tgcctgtctt gtaatgattg aaaatctggg
     3181 taatgtttta tggattatag aaaaattaga atcataagtt gtcaacgcaa cccagtcacc
     3241 taccgcagga aaatctacac gactttgtgc tgaaaaacgt aaatttccag ttatctcggc
     3301 ttcaaattca ccgttttctg tttttacaat atatctttcc ttatgttctg caatgactct
     3361 tccaatctca aagtctgaaa gaccactctc aatccttatt gtttcgagtt tgtcattata
     3421 tccaaaatct tctaatttca tgatttgtgc attttatttt ctttttttat actgaccgtt
     3481 aacaaccggg ctatgggcat ttggcagttt gcgggagcaa aaccgccgga atgcacctca
     3541 gccagccaat gaacgaggcg tgtgttagcg gctcgtcgtt tcctatttgt tccatttagg
     3601 taattttcct gttagctcaa caaagtcttt tagcatttca acttgctctt ttttctgtcc
     3661 atctttgcca gtcgtgacgt accaataaat gtcgagtgcg tctgtcttgt cctttaatac
     3721 ttggtaagtc ca
//
LOCUS       DATDNM010000578         2922 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_606904, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000578 DATDNM010000000
VERSION     DATDNM010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_606904"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..1355)
                     /locus_tag="VI413_09805"
     CDS             complement(189..1355)
                     /locus_tag="VI413_09805"
                     /inference="COORDINATES: protein motif:HMM:NF024241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6914958.1"
                     /translation="MFKKITRVVWILSVVSLFTDVASEMLYPVMPIYLKSIGFSILII
                     GILEGVAEATAGLSKGYFGKLSDATGKRLPFVQIGYILSAISKPITAFFTHPVWIFFV
                     RTTDRFAKGVRTGARDAILSDEATPETKGTVFGFHRAMDTIGAAIGPTLALIYLYFYP
                     NDYITLFYIAFIPGVIAIITTLLLKEKKAVHPPTHEKVSFFSFLKYWKQSPASYRQLL
                     IGLLLFTLFNSSDVFLLLKAKDAGLNDTHVIGIYIFYNMVYALFAFPVGSLADKIGLK
                     RMFIIGLALFSVVYLGFSINTNLYIFLGLFFMYGLYASATEGVSKAWISNITDKKDTA
                     TAIGTFSALQSLCTMVASSLAGIIWYTLGAKTLFIMSGVMAMVVMVYLGRMREK"
     gene            complement(1430..>2922)
                     /gene="dnaX"
                     /locus_tag="VI413_09810"
     CDS             complement(1430..>2922)
                     /gene="dnaX"
                     /locus_tag="VI413_09810"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEY6914959.1"
                     /translation="RSYNIHELDAASNNGVDDIRSLTDQVRIPPQIGKYSVYIIDEVH
                     MLSTGAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFNRITVADTVKHL
                     QMVAEKEGVTVDANGLNVVAQKSDGGMRDALSIFDQLVSFCGNNITYQGVIENLNVLD
                     YEYYFRLVESFLKGEVSNSLLIFNEVLNKGFDAHHFITGLSSHLRDVLVSKDPQTIAL
                     LEVGADIGERYKTQAQSCTPDFLFHALKISNDCDIDYRLSKNKRLLVELALIRLCQLT
                     DEKKKSSLIDEKPAPIQKVHVESAVNAPVNPASIAVPAAQATSIPRPIATTAKPKEEE
                     VAADSKPVFKRPGSISISAPTVAAHQPKETANSIVSEPATVLNKPFTADELIRAWYQF
                     ADTIPEQGRMTSMFRNTIPVITSPTTFEITVSNILQEKELKRLQPDIQNFIHIQLENS
                     AIRMTIKIAEESAVQRASTPEERYRLMADQNPALDILKNGLQLEID"
BASE COUNT          781 a          621 c          675 g          845 t
ORIGIN      
        1 gcttcctaaa cggaggtagc tcttatcagt ttatataaaa aaggagaatt cattttcagg
       61 cgagcttgcg caagatgcgc aagggcaaaa tcatttcaaa gggaggttgc gtaagctacg
      121 caagcatgct ttctttttat ttcgtatttg cgcaaactac gcaagcatga aataattttg
      181 gactcacttt atttctcccg cattcttccc aaatacacca ttaccaccat tgccataacg
      241 ccactcatga taaacagtgt tttggcaccc agcgtgtacc agataattcc ggccaacgaa
      301 cttgccacca tggtgcaaag gctttgcagg gcggagaacg tgccaatggc cgtggcagtg
      361 tcttttttgt cggttatgtt gcttatccac gctttggaaa cgccttcggt ggcggaagca
      421 tagagtccgt acataaaaaa taacccaagg aaaatgtaca ggttggtgtt gattgaaaag
      481 cccagatata ctacagagaa taaagccagc ccgataatga acatccgttt caatccaatt
      541 ttgtcggcca acgagcccac cgggaaggca aataaggcgt aaaccatgtt gtagaaaata
      601 taaatgccga ttacgtgtgt atcgttgagt ccggcgtctt tggcttttag cagcagaaat
      661 acatccgaac tgttgaacag cgtaaacagt agtaacccaa tcaataattg gcgataagag
      721 gccgggcttt gtttccagta tttcaggaag gaaaagaaag aaactttttc gtgggtagga
      781 gggtggacgg ctttcttctc tttgagtaaa agtgtggtaa taatggctat aactcccggg
      841 ataaaggcaa tgtagaaaag cgtgatataa tcgtttggat aaaaatacag ataaatcagc
      901 gccagtgttg gcccgatagc cgctccaatg gtatccatgg cccgatgaaa tccgaaaaca
      961 gttcctttgg tttcgggggt ggcttcgtcg gagagaatag catcgcgcgc tccggtgcgg
     1021 actcctttgg cgaaccggtc ggtggtgcgt acgaagaaaa tccacacggg gtgggtaaaa
     1081 aaggctgtga taggtttgga tatggcactc agaatatagc caatctgtac aaaaggcaat
     1141 cgtttgccgg tggcatcaga cagttttccg aaatatccct tgctgagtcc ggcagtggct
     1201 tcggcaacgc cttcaagaat tccaatgatt aaaatagaga atccgatact tttcaggtaa
     1261 atgggcatta ccggataaag catttcgctg gctacatcgg taaataagct cactaccgac
     1321 agtatccaaa caacgcgtgt aatcttttta aacatgattc tgtttgctgt aaattgcaaa
     1381 attaacaccc aattccttgc tgcttacccc ttactgctta ctacttcttt tagtctatct
     1441 ccagttgcaa accatttttc aggatgtcca gcgccggatt ctgatctgcc attaaccggt
     1501 aacgttcttc gggggtgctg gctcgctgta ccgcagattc ttcagcgatc ttaattgtca
     1561 ttctgattgc cgaattttcc aattggatat gaatgaagtt ttgaatatcc ggttgaaggc
     1621 gctttagttc tttttcctgc aatatattac ttacagttat ttcgaatgta gtaggggagg
     1681 tgatcacagg tatagtgttt ctaaacatgc ttgtcatgcg tccttgttcc ggaattgtgt
     1741 cggcaaactg gtaccacgca cgaattaatt catcggcagt gaatggcttg ttaagcactg
     1801 ttgcaggttc ggaaacaatg ctgtttgcag tttctttagg ctggtgcgca gcaacagttg
     1861 gagctgagat agaaatgctt ccggggcgtt tgaaaaccgg ttttgagtcc gcagcaactt
     1921 cttcttcttt tggttttgca gttgttgcga ttggcctcgg aatgctggtt gcctgagctg
     1981 ctggaactgc tatggatgcc gggttaaccg gagcattaac cgccgattct acatgtactt
     2041 tttgtatagg cgcaggcttc tcatcgatca gactagactt ttttttttcg tccgtcagtt
     2101 ggcacagacg gattaaagca agctctacaa gtaagcgttt attcttactg agcctgtagt
     2161 ctatatcaca atcgttactt atttttaatg catgaaacaa aaaatcaggc gtacaacttt
     2221 gtgcctgggt tttgtaacgc tcgccaatgt cagctccaac ttcaagcaag gcaatagttt
     2281 gtggatcttt acttacaagg acatcgcgca aatgcgaact gagtccggta atgaaatgat
     2341 gggcatcaaa acctttgttt aatacttcat tgaatataag tagtgaattt gagacttcgc
     2401 ctttgaggaa tgactccacc aaccggaagt aatactcgta gtcaagcaca ttcaggtttt
     2461 ctattacgcc ctgataagtt atgttattgc cgcagaaact aactaattgg tcaaaaatag
     2521 acaaagcgtc acgcattccg ccgtcacttt tttgagccac cacgttaagc ccatttgcgt
     2581 caacagttac gccttctttt tcggccacca tttgcaggtg tttcactgtg tcggccaccg
     2641 tgatacggtt aaagtcgtaa atctggcagc gcgaaagaat ggttggtata attttatgtt
     2701 tttcagtggt tgccagaatg aaaatggcat gtgcaggtgg ttcttccagt gttttcagaa
     2761 acgcattgaa tgctcccgtt gaaagcatgt gaacctcgtc gataatatat acgctgtatt
     2821 tccctatttg tggcggtatg cgcacctggt cagtcagcga acgaatatcg tccaccccat
     2881 tgttggaagc agcatccaac tcatgaatgt tatatgaacg ct
//
LOCUS       DATDNM010000579         3783 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1675435, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000579 DATDNM010000000
VERSION     DATDNM010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3783
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1675435"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..611
                     /locus_tag="VI413_09815"
     CDS             93..611
                     /locus_tag="VI413_09815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6914960.1"
                     /translation="MDPKQFNAQILTLSDKLFRLAKSMLRNADAAQDAVQDLSMKLWE
                     KRNNLDEVENVPAFTMRAMRNLCLDTIRQQHNEDELPAEFELGELNPHQRTEQKDMAG
                     KIREMIDNLPELQRTIIRMRDVEGMEISEIAYVTSLTENAISVNLSRARQKIREKILY
                     EQKRVEETVWKE"
     gene            599..1111
                     /locus_tag="VI413_09820"
     CDS             599..1111
                     /locus_tag="VI413_09820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914961.1"
                     /translation="MERINELLEKYFGGETTLAEEKELKRYFEAGNVAAAHEPYRALF
                     GAFAQELEAKATNPLKKVLPKQQIVKRIWIKTFAYSGIAAAILLAVWIQRPQEQETYA
                     VVAGSRIENTEYVQKYAEKKLNKVNQILRNSMKPMQSLETVRNSLEPMQKIGETREKL
                     DEIENKIQFK"
     gene            1121..1648
                     /locus_tag="VI413_09825"
     CDS             1121..1648
                     /locus_tag="VI413_09825"
                     /inference="COORDINATES: protein motif:HMM:NF025426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4252 domain-containing protein"
                     /protein_id="HEY6914962.1"
                     /translation="MKKLIILVAALFMIVAANQAQTLKSLFDKYADDERFEYVSVGKG
                     MMNLASAFGGIAKNDKEMMAKMRGIKILTLEANSDSPLMKAVERDLNQVIDEGDFEIA
                     VEAREKGERVHIYYRVSGKDNADMLIVTKEKGELSLIWLTGKMTKEEMMHSFSSNNKT
                     IHSNGDNDKIADSIS"
     gene            complement(1710..2333)
                     /locus_tag="VI413_09830"
     CDS             complement(1710..2333)
                     /locus_tag="VI413_09830"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HEY6914963.1"
                     /translation="MLEIIIKGVLIGLCISVPLGPIGMLTIQRTLNRGQRYGIATGLG
                     ATTSDLVYTIITLFFLSFVLDFIEQHRFIIQLVGSLVVAGFGYYIYKANPSTQPKPNE
                     SFKHSLLGDFFSSFALTFSNPLVLFVLIALFARFEFIGNKTTLFVSIVGISSILGGAL
                     LWWNLLTFLVSRFKNNLNMRDLKIINQITGIIIILIGCIGFILSIIK"
     gene            complement(2473..2877)
                     /locus_tag="VI413_09835"
     CDS             complement(2473..2877)
                     /locus_tag="VI413_09835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914964.1"
                     /translation="MKNLNLYKVALWGSIFLFSASLVFHLLIMGGIIPYTIVWGGRIH
                     DRYQMHTMETFSLFTNSLFLFIVLLKAGIVKIEVPNFVIQIGLWVMGAMFLLNTVGNF
                     YSQNALEKAIFTPLALLSAIFSITLALTKKTE"
     gene            complement(2899..>3783)
                     /locus_tag="VI413_09840"
     CDS             complement(2899..>3783)
                     /locus_tag="VI413_09840"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY6914965.1"
                     /translation="KVSVFHISFEKSNCTHCGACEKQCKSECIDSKTMTVDDSRCVTC
                     FNCLSACKKNGLKYDLRYKKQQAAPVQVPVDKSRRTFLLTSGAVMTTMAFANTKNIVG
                     KKDSILSRKPIMPPGAKNIDHFNTHCTGCQLCVTKCPMQVLKPAALQYGISGITQPHL
                     AFATHVFCTYECNICASVCPTGALVKLPMEEKKLTQIGIAKLRLDMCEVITHETDCGA
                     CSEHCPTQAVHMIPYKNGLTKPEVTDDLCIGCGGCESICPVRPYQAIYVEGVTTQMRA
                     RKPEEAKKFEKKIDDFGF"
BASE COUNT         1322 a          736 c          740 g          985 t
ORIGIN      
        1 cggggtaatg aacgaagaac aaatacgacc ctgtaatgag tactcacaaa ttgtctgttg
       61 caaaatggca agttgcatat tgaattaagt atatggaccc taaacaattt aatgctcaaa
      121 tactcacttt atccgacaaa ctgtttcgat tagcaaaatc gatgctacga aatgcggatg
      181 ctgcacagga cgctgttcag gacttgagta tgaaattgtg ggaaaagcgc aacaacctcg
      241 acgaagttga aaatgttccg gcatttacca tgagggccat gcgcaatctg tgcctcgaca
      301 ctatacggca gcaacataat gaagatgaat tacctgctga atttgaactt ggagagctaa
      361 atccgcacca gcggacagag caaaaggaca tggcaggaaa aatcagagag atgattgata
      421 atttgcccga attgcaacga accattatcc gaatgcgcga tgtagaagga atggaaatct
      481 cagaaatcgc ttatgtaact tcgctcaccg aaaatgccat aagcgtaaac ctgtcgaggg
      541 cacgtcaaaa gataagagaa aaaatactat atgaacaaaa acgcgtggag gaaactgtat
      601 ggaaagaata aatgaactgc ttgagaagta tttcggaggc gaaacaacac ttgccgaaga
      661 aaaagagctg aaacgatatt ttgaagcagg aaatgtggct gcagcacatg aaccatatcg
      721 tgccttattc ggagctttcg cacaggaatt agaggccaaa gccactaacc cactaaaaaa
      781 agtattacca aagcagcaaa tagtaaagcg gatctggata aaaacattcg cttattccgg
      841 aattgcagct gccattttat tagcggtgtg gattcagcgc cctcaggagc aggaaactta
      901 tgcagttgta gcaggcagca ggattgaaaa tactgaatac gtgcaaaaat atgctgagaa
      961 gaagttgaat aaggttaacc agatactccg taacagcatg aaacctatgc aaagcctgga
     1021 aacagtaaga aacagcctgg aacccatgca aaaaataggt gaaacaagag aaaagctaga
     1081 cgaaatagaa aataaaattc aatttaaata aaaaacgaaa atgaaaaaac taataatttt
     1141 ggttgcggca ctttttatga ttgttgcggc aaatcaggca caaaccctta aaagcctgtt
     1201 cgacaaatac gctgacgatg aacgattcga gtacgtttca gttggaaagg gaatgatgaa
     1261 tttagcttcg gccttcggag gaatagccaa gaacgacaaa gaaatgatgg ctaaaatgag
     1321 aggaataaaa atccttactt tagaagcaaa ttcagattcg cctctcatga aagctgtgga
     1381 acgtgatttg aatcaggtaa ttgatgaagg tgattttgaa atagccgtcg aagcccgcga
     1441 aaaaggcgaa cgcgtgcaca tttattaccg tgtgagtgga aaagataatg ccgatatgct
     1501 tattgtaact aaggaaaaag gagagttaag cctgatctgg cttacaggaa aaatgactaa
     1561 agaagaaatg atgcattcat tttcaagcaa taataaaaca atacattcaa atggggataa
     1621 cgataaaata gctgactcta tttcctgata agattttatc tttttgaaat gaaattgaag
     1681 ccggcccata aaataatggg ttggcttttt tatttgataa tactcaaaat gaaaccgata
     1741 caaccgataa gaataatgat tattccggtt atttgattga tgattttcag gtcccgcata
     1801 ttcaaattat ttttgaagcg gctgaccagg aaagtaagta aattccacca taacagcgca
     1861 ccacccaaaa ttgatgaaat ccctacgatg gacacaaaca atgttgtttt gttacctata
     1921 aattcgaatc gggcaaacag tgctattaat acaaacagga ctaaagggtt ggaaaaagtg
     1981 agtgcaaatg aactgaaaaa atcacccaac aagctatgct taaacgattc attgggtttc
     2041 ggttgtgtag aaggattggc tttgtaaata tagtaaccaa atccggctac aacaagacta
     2101 ccaaccaact gaataataaa acgatgctgt tcgataaaat ccagtacaaa gctaaggaag
     2161 aacaatgtta ttattgtata gaccaaatct gaagtggttg ccccaagacc tgtagcaatc
     2221 ccataacgct gtccccggtt aagagtccgt tgaatggtta gcatgccaat cggccccagt
     2281 ggtacagata tacacaatcc aattagcacc ccttttatga taatttctaa cattcttagc
     2341 ttttattgtt tccaatgcaa agataagttt ttttgtctat caaaccacaa atttaaattc
     2401 tttgtttaag gtttaataga ttattactgc attttttaga agttaaaaac gacaatttaa
     2461 aactaaattt agctattcag tttttttagt aagagcaaga gtaatactaa aaatagcaga
     2521 gagtaaagct aacggagtaa aaatagcttt ttccaaggcg ttctgcgaat aaaaattacc
     2581 cactgtattt agcaggaaca tcgcacccat tacccacaat ccaatttgta taacaaagtt
     2641 gggtacttca attttgacaa ttccagcttt taacaacact ataaacaaaa acagtgaatt
     2701 ggtaaacaat gaaaaagtct ccatcgtatg catctgatag cggtcatgta ttcggccacc
     2761 ccaaacaata gtatatggaa taatgccacc cataatcaac aaatggaata caagcgatgc
     2821 tgagaacaag aatattgatc cccaaagtgc aactttatat aaatttaaat tcttcattta
     2881 taatcatttg acataaaatc aaaatccaaa atcatcaatt ttcttttcaa actttttagc
     2941 ttcctccggt tttcgggctc tcatttgcgt agtcacacct tccacgtaaa tagcctgata
     3001 aggacgaacc ggacaaatag actcacaacc accacacccg atacacaaat catcagtaac
     3061 ttccggtttt gtaagaccat ttttgtacgg aatcatatgt actgcctgtg tagggcaatg
     3121 ctcggaacaa gccccacaat cggtttcgtg ggttattacc tcacacatat ccaaccgcag
     3181 ttttgcaata cctatttgtg tgagtttttt ttcttccatc ggaagtttca ccaacgcacc
     3241 tgtcggacac acagaagcgc aaatattaca ctcgtaggtg cagaacacat gagtggcaaa
     3301 cgccaaatgc ggctgcgtaa tacccgaaat gccatattgc agtgccgccg gtttaagcac
     3361 ctgcatagga catttggtaa cacaaagctg acagcctgtg caatgggtat tgaaatggtc
     3421 aatattttta gctccgggag gcataatcgg cttacgtgac aaaatactgt ccttttttcc
     3481 aacaatattt ttagtattgg caaaagccat agtagtcatt accgcaccgg atgtcagcaa
     3541 aaaagtccgt ctgcttttat ccaccggaac ttgcaccggc gctgcctgct gttttttgta
     3601 gcgaagatcg tacttcaggc cattcttctt acaggccgaa agacaattga agcaagtcac
     3661 acagcgtgaa tcatcaaccg tcatagtttt actgtcaatg cattccgact tacactgctt
     3721 ttcgcaggct ccgcaatgtg tacaatttga tttttcaaaa ctgatatgaa acacagatac
     3781 ttt
//
LOCUS       DATDNM010000580         3292 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_606994, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000580 DATDNM010000000
VERSION     DATDNM010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3292
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_606994"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..813
                     /gene="mazG"
                     /locus_tag="VI413_09845"
     CDS             16..813
                     /gene="mazG"
                     /locus_tag="VI413_09845"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009128917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HEY6914966.1"
                     /translation="MHTTEEKLQEFQRLLEIMTELRAKCPWDKEQTFESLRTLTIEET
                     YELADAIIRDDKKEIRKELGDILLHIVFYSEMGSETFDFDIYDVCQGLCEKLIYRHPH
                     IFADATAENSEAVMQNWEQLKLKEKGGNKSVLSGVPMSLPALIKAHRIQDKARSVGFD
                     WEHREQVWDKVQEEIDEFKVEIAAMDKDKMEAEFGDLLFSLINAARLYDINPENALER
                     TNRKFISRFNYLESKTITVGKDLKDMTLAEMDVIWDEAKKNERTSNL"
     gene            1360..>3292
                     /locus_tag="VI413_09850"
     CDS             1360..>3292
                     /locus_tag="VI413_09850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEY6914967.1"
                     /translation="MLYPSHFEQKIAFTTIRQLLKDKCVSSLGEEKVDEIQFSSDYVD
                     VMRLLSQTDEMLRVLTTDADELPIGDFYDVRPALSRVRIEGLFLDELEVFDLRRALEA
                     VRRLVAFLTKHEAEVYPHLHELIDGIETFPLIINRIDGILNKFGKIKDNASNELARIR
                     KDVFQVQSSISRTLNSILRQAQADGYVEKDVAPTMREGRLVIPVSPAFKRKVSGIVHD
                     ESATGKTVFIEPQQVVEANNRLRELEGEERREIMRILVEFTNFVRPHTQEIFASQYFL
                     GQIDFLRAKSLFGLEINAIKPRVDDCCQLEWAKAIHPILFLSLKKQGKSIVSLDITLN
                     EKQRILLISGPNAGGKSVCLKTVVLLQYMLQCGLLVPLHDSSRAGIFERLFIDIGDEQ
                     SIENDLSTYSSHLLNMKYFIKNSNEKTLLLIDEFGTGTEPMIGGAIAEATLERFNRNL
                     AFGVITTHYTNLKHYAEDAPGIVNGAMLYDRQHLQPLFQLSIGNPGSSFAIEIARKIG
                     LPEDLIAEAADKVGAEHLDYDKHLQDIVRDKRYWENKRQQIRQKEKKLEETLAKYEAE
                     MAGIDRQRKEITSKAKDEAKSLLSEANAKIENTIRQIKEAEAEKEKTRLVRKELEDFK
                     AKIADTQPEIGRDRSRPVLN"
BASE COUNT         1060 a          638 c          761 g          833 t
ORIGIN      
        1 attgtgttta aaaaaatgca tacaactgaa gaaaagctac aggaattcca acggctactc
       61 gaaataatga ccgaactgcg tgccaaatgc ccgtgggaca aggaacaaac tttcgaaagt
      121 ctgcgcacac tcaccataga agaaacctac gaactagcag atgccatcat tcgcgacgat
      181 aaaaaagaaa tccgtaagga actgggcgat atattgttgc acattgtttt ttactccgaa
      241 atgggcagcg agactttcga tttcgatatc tatgatgttt gccagggctt gtgcgaaaag
      301 ctgatttacc gtcatccaca tatttttgcc gacgcaacag ccgaaaacag cgaagccgtg
      361 atgcaaaact gggaacagct caaactcaaa gagaaaggcg gcaataaatc cgttttatca
      421 ggcgtgccaa tgtcgttgcc ggcgctgata aaagcgcatc gcattcagga caaagcccgc
      481 agtgtgggtt tcgactggga acaccgcgaa caggtgtggg acaaagtgca ggaggaaatc
      541 gacgagttta aagtggaaat tgccgccatg gacaaagaca aaatggaagc cgaatttggt
      601 gacttgcttt tcagcttgat taatgctgcc cgcctttacg atattaatcc cgaaaatgca
      661 ctggaacgca ccaaccgcaa gtttatcagt cgcttcaact accttgaatc taaaaccata
      721 accgttggca aagacctcaa agatatgact ttggccgaaa tggatgtgat ttgggatgag
      781 gcgaagaaaa atgagagaac ctctaacctc taaggggaaa tttgaagaaa aatggttatc
      841 tgaaattgct gatactttca gaatgatgaa aaataagagt ctcagatttg tgatgctctc
      901 aaaataaaaa aaaataagag tctcacaaat gtgatgttaa aggaatggag aaaaaaaaga
      961 gtctcaaatt tgtgatgctc tcaaaatgaa aaaaaataag agtctcacaa atgtgttgtt
     1021 aaagaaatga agaaaaacaa gagtctcaaa tttatgatgc cttccaaaaa ataataatag
     1081 atagccttaa atttctgatg cttcaaaaaa gcaaaagaac gtttatttca gatttctgat
     1141 acccctaata aaacaaataa aaattatcta caacctatat aataaggcat tatgaataaa
     1201 ttggtgatta ttggaaatag atttgatata aattcaaaac atttaatgag aacttaagta
     1261 gtctcattcc gagaatcaaa accattaact tcattcaagt caagacaaca aactcaaatc
     1321 ttaactgtca actatcaatt ttcaactgtc aattcaaaga tgttatatcc ttctcatttc
     1381 gaacaaaaaa tagcttttac aaccattcgc caattgttga aagacaagtg tgtgagctcg
     1441 ttgggcgaag aaaaagtaga tgaaattcag ttttcgtcgg attatgtcga tgttatgcgc
     1501 ctgctcagcc agaccgacga aatgttgcgc gtgctcacta ccgatgccga cgaattgccg
     1561 attggtgatt tttacgatgt gcgtccggcg ttgtcgcgcg tgcggattga aggtttgttt
     1621 ttggacgaac tggaggtttt cgatcttcgc agggctttgg aagcggtgcg tcggttggtg
     1681 gcttttctca ccaagcacga agctgaagta tatccgcatt tgcacgaact gattgacggc
     1741 atcgaaactt tcccgttaat aattaatcgc attgacggca ttctcaataa atttggcaag
     1801 ataaaagaca atgcatccaa cgagttggct cgtatcagga aagatgtatt tcaggtgcag
     1861 agttccattt cgcgtacgtt gaattctatt ctccggcagg cgcaagccga tggttacgtg
     1921 gaaaaagatg tggcgcccac catgcgtgaa ggtcggttgg taattccagt ttcgcctgct
     1981 tttaagcgta aggtcagcgg tattgtacat gatgaatctg ctaccgggaa aacggttttt
     2041 attgagccac aacaagtggt ggaagccaat aaccggctgc gggagctgga aggcgaggag
     2101 cgacgtgaga ttatgcgcat tttggtggaa tttaccaatt tcgtgcgtcc gcatacccaa
     2161 gaaatttttg cttcgcaata tttcctcggg caaattgatt tcctgcgtgc caaatcgctt
     2221 ttcggcttgg aaataaacgc tatcaaacca cgagtggatg attgttgcca gctggaatgg
     2281 gccaaagcca ttcacccgat acttttccta tcgctcaaaa aacaaggcaa aagtatcgtt
     2341 tcgctagata ttacgctgaa cgagaaacaa cgtatcctct taatttcagg tccgaatgcc
     2401 ggtggtaaat ccgtatgtct gaaaacggtg gtgttgctgc aatatatgct tcaatgcgga
     2461 ttgcttgtgc cgcttcacga tagcagtcgt gccggaattt ttgaacggct atttattgat
     2521 attggtgatg agcaatccat tgaaaatgac ttgtcgacgt atagttcgca tttgctgaat
     2581 atgaaatatt ttatcaagaa cagcaacgag aaaacgctgt tgttgattga cgaatttgga
     2641 acaggaacgg agcccatgat tggtggtgcg atagctgaag ccacgttgga acgcttcaac
     2701 cggaatctgg cttttggggt aattacaacg cactacacca atctgaaaca ttatgccgaa
     2761 gatgctccgg gaattgtaaa tggtgctatg ttgtacgacc gccagcactt gcaaccgctg
     2821 tttcaactca gcattggaaa ccccggaagt tcgtttgcca tcgaaattgc acgcaaaatc
     2881 gggttgcccg aggatttaat agccgaagct gccgataaag taggagcgga gcatttggat
     2941 tacgataagc acttgcagga tattgttcgc gataaaagat actgggaaaa taaacgtcag
     3001 caaattcgcc aaaaagaaaa gaaactggag gaaacgctgg ctaaatacga agctgaaatg
     3061 gccggaatcg accgtcagcg gaaagaaata acttcgaaag ccaaggatga agctaagagt
     3121 ttgttgagcg aagccaatgc gaaaattgaa aataccattc gccagataaa agaagccgaa
     3181 gcggaaaaag aaaagacgcg tttggtacgt aaagaattgg aggattttaa ggcgaagatt
     3241 gcagataccc aaccagaaat tggtagggac aggtcgcgac ctgtcctgaa ta
//
LOCUS       DATDNM010000581         2428 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1462202, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000581 DATDNM010000000
VERSION     DATDNM010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1462202"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..1126
                     /locus_tag="VI413_09855"
     CDS             11..1126
                     /locus_tag="VI413_09855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004303641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6914968.1"
                     /translation="MIKYLLKKEFKQILRNPFLPKMIFVFPFMVLMVFPWAASYEIKN
                     LNLSVIDNDHSTYSHRLTQKIISSNYFRLKDVSPNYNKALKSVEKNETDIILEIPAHF
                     EKDLVNREGAKVMVSANAVNGMKGGIGMTYLVSIVNDFNMGIIQELMPVVPVGSSVPT
                     IQIDSQYRFNPHLNYRVFMVPALMVMILTLLCGFLPAVSIVFEKELGTMEQINVSPVP
                     KTTFILAKLIPFWIIGIIVISIGFLIAWAVYGLIPAGYFSTIYLFAAIYILTVSGLGL
                     VISNYAQTLQQAMFIVFFFMLVFIMLSGLYTPIDSMPEWAKWIAAFNPLKHFMEVMRS
                     VYLKGSNPLQLTKQLLALISFAVFFNSWAVLSYRKKN"
     gene            complement(1194..2012)
                     /gene="murQ"
                     /locus_tag="VI413_09860"
     CDS             complement(1194..2012)
                     /gene="murQ"
                     /locus_tag="VI413_09860"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014223531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HEY6914969.1"
                     /translation="MTFQKITEQHSLHSDLDQKPVSQLLIEMNEEDQKVALAVQKSIP
                     QIEMLVEKIVERMNRGGRIFYVGAGTSGRLGVLDASEIPPTFGMPSGLVVGLIAGGDA
                     ALRNPVENAEDDTEKAWKELQQHNINKNDTVIGIAASGITPYVVGALQNARTNGILTA
                     SISCNPDSPMAHEADIRIEVIVGPEFVTASTRLKSGTAQKMVLNMITTTTMIKLGRVK
                     GNKMVNMQLTNAKLIDRGTRMIMDEFGLEYDQAKNALLVHGSVKKAIEAISKPI"
     gene            complement(2042..>2428)
                     /locus_tag="VI413_09865"
     CDS             complement(2042..>2428)
                     /locus_tag="VI413_09865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914970.1"
                     /translation="VLILNQYKSRKNDKFLYITIGLIGLFLGFVIAWLFTFASDLKYE
                     DDYIVYQSVSNTSHKIIVQTIDEGSFGSHIREVNALELLPGVRYIEEFSVVILDGKWI
                     KYDNWKHSADTLVYKKFEYKSEINSK"
BASE COUNT          670 a          519 c          460 g          779 t
ORIGIN      
        1 ggtcaagttt atgataaagt atttattaaa aaaagaattc aagcaaatac ttcggaatcc
       61 gtttcttccg aagatgattt ttgtgtttcc gtttatggtg ctgatggttt ttccctgggc
      121 agccagctac gaaattaaaa atctgaatct gagcgtgatt gataacgatc acagtacgta
      181 ttcgcatcga ctgacgcaaa aaataatttc atcaaattac tttcggctga aggatgtgtc
      241 acccaattat aataaggccc tcaaaagtgt agagaaaaat gaaacggaca ttattcttga
      301 aattccggct cattttgaga aggatttagt caaccgcgag ggagcaaaag tgatggtttc
      361 ggccaatgct gttaatggca tgaaaggtgg aatcggaatg acttacctgg tgagtattgt
      421 gaatgacttt aacatgggaa ttattcagga attaatgcct gtagtccctg ttggcagttc
      481 tgttccaacg attcagatcg actcccaata ccggtttaat cctcatttga actatcgggt
      541 tttcatggtt cctgcactta tggttatgat tctgacactc ctttgcggat tcttacctgc
      601 cgtttccatt gtttttgaaa aagagttggg cactatggag caaatcaatg tgagtccggt
      661 gccaaaaacg acgtttattc tggctaaact aattccattc tggataatcg gaattattgt
      721 tatcagtatc ggctttctga ttgcatgggc cgtatacggg cttattcctg caggatattt
      781 ttcaacgatt tacttgtttg ccgccattta tatcctgact gtttccggct tgggtttggt
      841 gatttcaaac tatgcccaaa ccctgcagca ggccatgttt attgtatttt tctttatgct
      901 ggtatttatc atgctgagcg gtttgtacac ccctatcgac agtatgccgg aatgggcaaa
      961 atggattgca gcgttcaatc cgctgaaaca tttcatggaa gtaatgcggt cggtttacct
     1021 gaaaggaagc aatccgctgc agctcacaaa acagttactt gccttaatca gttttgcagt
     1081 attctttaat agctgggcag tattgagtta ccggaagaag aattagttta tttagccgat
     1141 ttataccaat cccgcaaaga aacgaactat ctgtagcctt gcgggattat tgtttaaata
     1201 ggttttgaaa ttgcttctat tgcttttttc accgaaccat gaacaagcaa agcatttttt
     1261 gcctggtcat actccaggcc aaattcgtcc atgatcatgc gagtgccgcg gtcaatcagc
     1321 ttggcattgg taagctgcat attcaccatt ttattgcctt ttaccctgcc gagcttaatc
     1381 atggtggtgg tagtaatcat gttcaacacc atcttttgcg cagtacctga tttaagccgc
     1441 gtgcttgccg taacaaattc aggccccaca atcacttcga tccgaatatc agcctcatga
     1501 gccatcggcg aatcggggtt acagcttatt gaagccgtca ggataccgtt ggttcgtgca
     1561 ttttgcaaag ccccaaccac gtaaggcgta attcccgaag ccgcaatgcc aatcaccgta
     1621 tcgttcttgt ttatattgtg ctgttgaagt tctttccacg ccttctcagt atcatcttct
     1681 gcattttcta ccgggttacg caaagctgca tcacctccgg caatcagtcc aaccaccaag
     1741 cccgaaggca tcccgaatgt tggcggtatt tccgatgcat ccaacacacc cagacgaccg
     1801 ctggttccgg ctcctacata aaaaatccgt ccgccccgat tcattcgctc cacaattttc
     1861 tccaccagca tctctatttg cggaatggat ttctgaactg ccagcgccac tttctgatct
     1921 tcctcgttca tttcaatgag tagctgtgaa actggttttt gatcaagatc agaatgaagt
     1981 gaatgttgtt cggtaatttt ttgaaatgtc atactatata attttcacac agaaagtttc
     2041 attatttgct atttatttca gacttatatt caaacttttt atagacaaga gtatctgctg
     2101 aatgtttcca attatcatat tttatccatt taccatctaa aatgacaaca gaaaattctt
     2161 ctatatatct cactcccggc aataattcca atgcgtttac ttctcttatg tgtgaaccaa
     2221 aagaaccttc atcaatggtt tgaacaatta tcttatgact tgtatttgaa acggattgat
     2281 atacaatata atcatcttca tatttcaaat cagaagcaaa agtaaacagc caagctatca
     2341 caaaacctaa aaatagtcca attaatccaa ttgtaatata taggaactta tcattttttc
     2401 tgctcttata ttgatttaaa atcaacac
//
LOCUS       DATDNM010000582         3911 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1354466, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000582 DATDNM010000000
VERSION     DATDNM010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3911
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1354466"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..1584
                     /locus_tag="VI413_09870"
     CDS             202..1584
                     /locus_tag="VI413_09870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008759880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP
                     dehydratase"
                     /protein_id="HEY6914971.1"
                     /translation="MSNQSTIKQAFTLTGKGLHSGLEITLTFLPAPENHGVKIKRVDL
                     PEQPVMDAVAEYVTETTRGTVLKKGEIQVSTVEHALSALYAFGIDNCLLEVNAPEFPI
                     LDGSAKYYVEQIQQIGIEEQKAERDYFIVRKKIEYSIPETGAKITILPDDVFSVDVHI
                     GFDSPVLNNQFASLSSLNDYATEIANARTFVFVREIEQLLKLGLIKGGDLKNAIVIYD
                     KQMSQADFDHLADLMHQPHQDAAKLGYLNGGVKFPNEPARHKLLDVIGDLSLIGKPIR
                     GKVIATYPGHKINTDLAKQIRKDIKKLEVQAPVYDDTIAPVLDVNAIKKLLPHRWPFL
                     LVDKVIDIKQKVVVGVKNVTANETFFMGHFPDEPVMPGVLIVEAMAQTGGLLVLSSIE
                     EPERYSTYFLKIDNVKFRNKVVPGDTLIFRLEMPEELRRGCAVMKGHAFVGGKIVAEA
                     EFMAQIVKNK"
     gene            1756..2535
                     /gene="lpxA"
                     /locus_tag="VI413_09875"
     CDS             1756..2535
                     /gene="lpxA"
                     /locus_tag="VI413_09875"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEY6914972.1"
                     /translation="MKQPLAYIHPDAKIASTVVIEPFVTIDKNVVIGEGTQIGSNVTI
                     LEGVRIGKNCRIFPGAVIGAVPQDLKFKGEDTLAIIGDNTTIREYVTINRGTASKGKT
                     VVGDNCLIMAYCHVAHDCVLGNNIIMGNATQLAGEVEIDDFAILSGACLVHQFTRIGS
                     HVMVQGGSKIGKDVPPFITAGREPLSYAGINSIGLRRRGYTNEQIRDIQDVYRYLYQS
                     GMNTSHAVERIQAELPATKERDEILLFVKNSPRGIIKGYFE"
     gene            2938..>3911
                     /gene="glnS"
                     /locus_tag="VI413_09880"
     CDS             2938..>3911
                     /gene="glnS"
                     /locus_tag="VI413_09880"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HEY6914973.1"
                     /translation="MENIDEAPKKSLNFIEAFVEQDLKEGKNDGRIQTRFPPEPNGYL
                     HIGHAKAICLDFGIADNYGGVCNLRFDDTNPVKEDVEYVDSIQEDIQWLGYKWANIYY
                     ASDYFQQLWDLAVELIKQGKAYVDEQSAETIAKQKGTPTVPGTESPYRNRPIEENLAL
                     FNKMNTGEVPEGAMVLRAKIDMASSNMHFRDPLMYRVINSHPHHRTGWTWKAYPMYDY
                     AHGQSDYFEGVTHSLCTLEFEVHRPLYDWFIDQFKDSDYRPRQIEFNRLNLTYTVMSK
                     RKMLQLVQEGLVSGWDDPRMPTICGLRRRGYSPESIHNFIDKIGYTKF"
BASE COUNT         1261 a          812 c          818 g         1020 t
ORIGIN      
        1 cctgccgttc cgattatgac ttttcataaa gcagccatag tacataaaaa tcttcctgaa
       61 cttcagaaat tgatttacgc tatgcaaaaa cggatagacg aattagaaaa gaaactgatg
      121 taatttcagc ttttaattat caatatttta ttcaaaaaaa catctcacag gtattttgct
      181 gtgacttgga aattaaaaag aatgtcgaat caaagtacaa ttaaacaagc ctttacgcta
      241 accggaaaag gtttacactc cggtttggaa atcacattaa cttttcttcc ggctcccgaa
      301 aatcacggtg taaaaatcaa acgggttgat ttacccgaac agcctgtaat ggatgcagta
      361 gccgaatacg ttaccgaaac cacccgtgga acagtattga aaaaaggcga aatacaggtt
      421 agcaccgtag aacatgcctt atcagcactt tacgctttcg gaattgacaa ctgcttgctg
      481 gaagtaaatg caccggaatt ccctatattg gacggaagtg caaaatatta cgtagagcag
      541 attcaacaaa ttggaattga agaacaaaaa gccgagagag attactttat cgttcgcaaa
      601 aaaatagaat acagcatacc cgaaacagga gccaaaatta ccattctccc tgatgatgtt
      661 ttcagcgtgg atgtgcatat cggctttgac tcacccgtac tgaacaatca gtttgcaagc
      721 ctttcctcgt tgaacgacta tgctaccgaa attgccaatg cccgcacgtt tgttttcgtt
      781 cgcgaaattg aacaattgct gaaattgggt ctgattaaag gtggtgacct gaaaaatgcg
      841 atagttattt acgacaaaca aatgtcgcaa gcagattttg atcatttggc tgatttaatg
      901 caccaaccgc accaagatgc tgcaaaactg ggttacctga atggcggtgt gaaatttcca
      961 aacgagccgg cccgccacaa actgctggat gtaataggcg atttgtcgct aatcggaaag
     1021 ccaatccgcg gaaaagtaat tgcaacttac cccggacata aaatcaacac cgatctggca
     1081 aaacagattc gcaaagacat aaaaaaactg gaagtgcagg cacccgttta cgacgacacc
     1141 atcgctcctg tcctggatgt aaacgccatc aaaaaactgt taccacaccg ttggccgttc
     1201 cttttggtcg acaaggtaat tgatatcaaa caaaaagtag ttgtaggcgt aaaaaacgtt
     1261 actgccaacg aaacattctt catgggtcac ttccctgatg aacctgtaat gccgggcgta
     1321 ctgattgtag aagccatggc ccaaacaggt ggtttgctcg ttttgagcag cattgaagaa
     1381 ccggaacgtt actcaaccta cttcctgaaa atagacaatg taaaattccg caacaaggta
     1441 gtaccaggtg acacgctcat attcagactg gaaatgccgg aagaattgcg tcgcggttgt
     1501 gcagttatga aaggccacgc atttgtggga ggaaagatag tagctgaggc cgaatttatg
     1561 gctcaaattg taaagaataa gtaattagct cataagttga ttcgttaatg agttaattga
     1621 ttgatgaatt accaaacact gaagtgcgag aaacttccaa aggagtttga caaaaaactc
     1681 ttttggaaat gcacttcaaa aggttttcaa aagaaaaaga agataataaa acaataaaaa
     1741 accgacttac cagaaatgaa acaaccctta gcatatattc acccggatgc aaaaatagca
     1801 tcaacagtag taatcgaacc ttttgttaca atcgataaga atgtagtaat tggagaagga
     1861 acacaaatcg gatcgaatgt taccattctg gaaggtgttc gcatcggtaa gaactgccgg
     1921 atttttccgg gagcagtaat tggtgcggtg ccacaggatt tgaaattcaa aggcgaagat
     1981 acattggcaa ttattggtga caacaccact attcgcgagt atgtaactat caacagagga
     2041 acagcttcaa aaggaaaaac cgtggtaggt gacaactgcc ttattatggc ttattgccat
     2101 gtggctcatg actgtgtgtt gggcaataat atcattatgg gtaacgctac ccagttagcc
     2161 ggtgaagttg aaattgatga ttttgccatt ctaagcggag cttgtttagt acaccagttc
     2221 acccgtatcg gttcgcatgt tatggttcag ggtggttcaa aaatcggcaa ggatgttcct
     2281 ccgtttatta cagctggccg cgaaccgctt tcgtatgcag gtattaattc aatcgggctg
     2341 cgtcgccgtg gctacaccaa cgaacaaata cgtgacatcc aggatgttta tcgctacctg
     2401 taccaatctg gcatgaatac ttcccatgct gttgaacgta tccaggctga acttccggcc
     2461 accaaagagc gtgatgaaat cctgcttttt gtcaagaatt cgcctcgcgg aatcattaaa
     2521 ggatactttg aataataaga ggtaagaagt aagaagcaag tggtaagaaa acgcaagact
     2581 tattgacaaa aaggataaac agattctgtt tttacagact ttacgccttt gcgtaatact
     2641 caattaaatt aaaactctca aaggtgcaat gcacactttg aggttttttt atttataaac
     2701 gggtaattat tttgtatatt tatttacata caattgtcca attcccattt ttcaactatt
     2761 tttgcactga aactttaagg caaaatcccg ttaacagaga agtaccagac attaagaagt
     2821 aagacataag cactaagagg caagtatcat aagtacccaa aacctcccgg aagccgatat
     2881 taattcttac ctcttacttc ttgctacttc ttttttaaca tgtaattcgt aacatttatg
     2941 gaaaatattg atgaagcacc caaaaagagc ttgaatttta tagaagcttt tgtggagcaa
     3001 gatttgaaag aaggtaaaaa tgacggacga attcaaacac gtttcccgcc ggaaccaaac
     3061 ggctacctgc acattggtca tgccaaggct atctgcctcg attttggcat agccgacaat
     3121 tatggcggag tttgtaatct tcgtttcgat gacaccaatc cggtgaaaga agacgttgaa
     3181 tatgtcgatt ccattcagga agacattcaa tggctcggat acaagtgggc aaacatttat
     3241 tatgcttccg attatttcca gcagttatgg gatttggctg tagaacttat caaacaagga
     3301 aaagcatacg ttgacgaaca atcggcagaa accattgcca agcaaaaagg cacacctacc
     3361 gttcccggaa cggaaagccc gtaccgcaac cgcccgatag aggagaacct tgcgttattc
     3421 aataaaatga acaccggaga agttcccgaa ggtgctatgg tgcttcgtgc caaaatagac
     3481 atggcttcgt ccaacatgca tttccgtgac ccgttgatgt acagggttat caattcgcat
     3541 ccgcaccacc gtaccggttg gacctggaaa gcatacccta tgtacgatta tgcccacgga
     3601 caatcggatt attttgaagg cgtaacacat tcactttgca cactggaatt tgaagtacat
     3661 cgcccgctat acgactggtt tatagatcag ttcaaagatt cggactatcg cccacgacaa
     3721 atagaattca accggttgaa cctgacatat accgttatga gcaagcgtaa aatgcttcaa
     3781 ctcgtgcagg aaggcctggt aagcggctgg gacgatccac gtatgccaac tatttgcgga
     3841 ttgcgccgcc gtggttattc accggaatcg atccataatt tcatcgacaa aattggttat
     3901 accaaatttg a
//
LOCUS       DATDNM010000583         3333 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1249281, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000583 DATDNM010000000
VERSION     DATDNM010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3333
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1249281"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VI413_09885"
     CDS             <1..220
                     /locus_tag="VI413_09885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914974.1"
                     /translation="TNSFDVYPNDSVLARNINYRKDGTAPQSWFKSFVITPVEGIEMN
                     NPELAENWVKYNNNKIPTYVFTLNKKIQ"
     gene            456..1706
                     /locus_tag="VI413_09890"
     CDS             456..1706
                     /locus_tag="VI413_09890"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY6914975.1"
                     /translation="MGKLILSTLLFISVIANSQNNKVIDWDADLNFLKTELPKNHIKL
                     YNIKSEKDFFYGIEKISQEKNKLSELDIAIKLQQLIASFGDSHTMVGWNQLADNKKAI
                     PFNLYWFNDGLYVINTTEENQSILGYKILKINGNPLAMIADSLKTLMTVDNNAVVKND
                     LPKLLPYVQLLEHFGFVKTDTIDLLLENGKGELLNYTIKPAVLNRQNSRSFRPDSIAL
                     CYKNQKSLFADSILRKDAAYYIQYNVCASREYPPQGFKGNPEQLPSFNDFKKRVIETI
                     NNNDFDKVIFDMRFNGGGNSAPGTELISELAAIKKINKKGKLYVIIGRKTFSSAILNT
                     LDFQRMTHAIFVGEETAGKPNHFGEIKLLELPDSGLKIQYSTKYFQKSTKDLKTITPD
                     HLIEMRFKDFKEGYDPVYDWIVKQ"
     gene            1834..2685
                     /locus_tag="VI413_09895"
     CDS             1834..2685
                     /locus_tag="VI413_09895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914976.1"
                     /translation="MKKLIFFLLLMSLASYSQKLKDRIQGDWLCVSILDSHGHPIAGK
                     YGNADDFLKFKFKNSTFTACKTPFDTGVEQDIVFKNGNSFDWLPTARYELPERVYVVK
                     NINDKYMILATRAQNGDSITYYFMNQKNFPCSDAKILDNGILVVKHLLTSKDKNSGAN
                     KAYEYQINNDSTNLYPRPTFKYSTGGDFGGIFSYNFKLPEDFELDQVSDELIIDFDVA
                     ENGAKNFNIIKGLNDKFNSETIRVMTKLRKYWKPLVVDKKIINTTMRMHIHFYQTIVE
                     LQPPWKH"
     gene            2865..>3333
                     /locus_tag="VI413_09900"
     CDS             2865..>3333
                     /locus_tag="VI413_09900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914977.1"
                     /translation="MSHIKSGLLIRNLFIICVLVFFTSCIYEPFGTYENPVNTNPATP
                     QIINLELNVNADTLWVYGNQKLKYHFKSSNEKQSILGLKIYIDGAICDSVISDNGEFD
                     ILQSALTAGVHKMNILLYTKSGTGSIADRLNAEAILLTKEWVVIADYSKKNVTY"
BASE COUNT         1213 a          538 c          582 g         1000 t
ORIGIN      
        1 aacaaattca tttgatgttt atccaaatga tagtgtttta gctcgtaata tcaactatag
       61 aaaagatgga acagcaccac aaagctggtt taaaagcttt gttattacac cagtagaagg
      121 tatagaaatg aataatccgg aactcgctga aaattgggta aaatacaata ataacaaaat
      181 acccacatat gttttcacat taaataaaaa aatccaatag aacatgatct atattgaatt
      241 atcttatact ttcttgtcct tgtggatatg aatatctaac gagaaaaggt tggtgttgct
      301 tgccgggatc acagatcccg gcaagcagtt ccgaacttta atgaatacaa tgagtatatc
      361 tatcccacgt ttgcaaacct tggggagtaa gtataagtat ttagtcccaa cacatgttct
      421 tcagtcatca actacaacac taacaatcaa ctatcatggg aaaattgatt ttatcaactt
      481 tactattcat ttcggttatt gcaaattcgc agaacaacaa agttattgac tgggatgctg
      541 atttaaattt tcttaaaact gaattaccga aaaaccatat taaactttat aatatcaaaa
      601 gcgaaaagga tttcttttat ggcattgaaa aaatatcaca agaaaagaat aagttatcgg
      661 aacttgacat agcaataaag ctgcaacagt tgatagcttc atttggcgat tcacacacaa
      721 tggtaggttg gaatcaattg gctgacaaca aaaaggctat tccattcaat ctgtactggt
      781 tcaacgatgg actttatgtt ataaatacga ctgaggaaaa tcaaagcata ctcggatata
      841 aaattttaaa gattaacggt aatccacttg ctatgatcgc tgattcgtta aagacattaa
      901 tgactgtaga taataatgcc gttgtaaaaa atgacttgcc aaagctactg ccttatgttc
      961 agcttctgga acattttggt tttgtcaaaa cagatactat tgacttgctt cttgaaaatg
     1021 gaaaaggaga attgctgaat tacacaataa aaccggctgt tctgaacagg caaaacagta
     1081 gatcgttcag acctgattct atagcacttt gctataaaaa tcaaaaatct ttatttgcag
     1141 atagtatcct tagaaaagat gctgcttatt atattcaata caatgtgtgc gccagccggg
     1201 aatatccgcc acaaggattc aaggggaatc cggaacagtt gccttccttc aatgatttta
     1261 agaagagagt aattgaaact atcaacaata atgattttga taaggtcatt tttgatatgc
     1321 gtttcaatgg tggtggcaat tcagcacccg gaacagaatt gataagtgaa ctggcggcaa
     1381 taaaaaagat taataaaaaa ggcaagttat atgtcatcat tggacgaaaa acattttcct
     1441 cagcaatcct gaatacgctg gattttcaac ggatgacaca tgccattttt gtaggggagg
     1501 aaaccgcagg caaaccgaat cattttggcg aaataaagct acttgaactt cctgattccg
     1561 gattgaaaat acaatattct acgaagtatt ttcaaaagtc cactaaagac ctgaaaacaa
     1621 taacccccga tcacttaatt gaaatgaggt ttaaagattt taaagagggg tatgaccctg
     1681 tatatgattg gatagtaaaa caataaatag ctgaacggac aattactaat ttagatcata
     1741 ttaagcaaac acaattttac aaacaaagga tatttatata aggtatggct tagcgcatgt
     1801 aaaggcgtta tgttgtttca aaaaaacaaa gacatgaaaa aactaatatt ttttttatta
     1861 ttgatgagtt tggcaagtta ctcacaaaaa cttaaagaca gaattcaagg tgattggtta
     1921 tgtgtgagca ttttagattc acatggtcat cctatagcag gaaaatatgg gaatgcggat
     1981 gattttttaa aatttaagtt taaaaacagt acattcactg catgtaagac cccattcgat
     2041 acaggagttg aacaagatat agtttttaaa aatggaaact catttgattg gttaccaact
     2101 gcaaggtatg aattaccaga gagagtttat gttgtaaaga atataaatga taagtatatg
     2161 attttagcaa caagagccca aaatggagat tcaattactt attattttat gaatcaaaag
     2221 aatttcccat gctctgatgc aaaaattctt gataatggaa ttcttgtggt aaagcattta
     2281 cttacttcaa aagataaaaa tagtggagcc aataaggcgt atgaatatca gataaataat
     2341 gattcaacga acttatatcc cagacctact tttaaatact caactggtgg agacttcggt
     2401 ggaatattct cctataattt caaacttcct gaagactttg aactagatca agtctcagat
     2461 gagttaatta ttgattttga tgtcgcagaa aatggagcaa aaaatttcaa tatcattaaa
     2521 ggacttaacg acaagtttaa ttcagaaaca atcagagtaa tgacaaaact acgcaaatat
     2581 tggaaacctt tagttgtcga caaaaagatt atcaacacaa ctatgagaat gcatattcat
     2641 ttttatcaga caattgttga gcttcaacct ccttggaaac attaagccaa caccacataa
     2701 tgcacgctca cttctctttc ttgtttgcaa acgagagacg gtgagctttt gcccaacaga
     2761 caattcttcg tagattagca tttatagtaa cacagttgaa agtacctgga tattatctgt
     2821 agaactctat tcgttaaatt tgaaaacaaa taaccaccag ctttatgagc catattaaat
     2881 cgggtttatt gatcagaaat ttatttatca tttgtgtatt agtgtttttt acttcctgta
     2941 tatacgaacc cttcgggaca tacgagaacc ctgtaaatac taaccctgct acaccccaaa
     3001 ttatcaacct ggagctaaat gtcaatgctg atacgctgtg ggtatatggt aatcagaaat
     3061 tgaaatatca ttttaagagc tccaatgaaa aacaaagtat acttggatta aaaatatata
     3121 ttgacggtgc aatttgtgat tctgtgatat ctgacaatgg agaatttgat attttacagt
     3181 cggcattaac tgcaggcgtg cataaaatga atatcttatt atatacaaaa tccggaaccg
     3241 gaagtattgc tgaccggttg aatgcggagg ccatactact taccaaagaa tgggtagtga
     3301 ttgcggatta ttcaaaaaag aatgtaacct aca
//
LOCUS       DATDNM010000584         4420 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_927879, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000584 DATDNM010000000
VERSION     DATDNM010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4420
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_927879"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1042
                     /locus_tag="VI413_09905"
     CDS             <1..1042
                     /locus_tag="VI413_09905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005833368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetylxylan esterase"
                     /protein_id="HEY6914978.1"
                     /translation="TLKDGTLAINAGTMKKTGFLRCQVFLTINSKEYQGISTVGFERE
                     SIEPVTIMPDDFISFWENAKAQASKIPMDIKMTLAPDRCTEKVDVYHVNIQNFEIGSR
                     LYGMLSVPKKEGQYPAILKVPGAGIRSYTGSVSDAEKGYIIFEIGIHGIPVNLTGDIY
                     TNLYEGPLKGYHTFNMENKDRYYYKRVYLGCVRAIDFIYSLPQFDGKNLITLGGSQGG
                     ALSIVTAALDSRVKGLVAFYPALCDITGYLHGRAGGWPHMFNNPANNTPDKIATARYY
                     DVVNFARKIKVPGFYSCGYNDMVCPPTTTFSAFNSIKAPKELCIMENTAHYTYPEQWN
                     EAWKWVASFFNK"
     gene            1055..3046
                     /locus_tag="VI413_09910"
     CDS             1055..3046
                     /locus_tag="VI413_09910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007663927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 97 protein"
                     /protein_id="HEY6914979.1"
                     /translation="MRKFFLILITVLSGTSLYAQKSYQVKSPDGKLTVVISVGKTITY
                     SLLHETQEMISSSPISMQLENGAAFGNNSKVKTAKLVSADQIITTPFYKRSKIHDYYN
                     ELNLSFKNNFSLIFRAYNEGMAYRFVSTGKADFIVKNEEATFNFNKDYKAYIPYVKTN
                     AKTIEGQYFNSFENTYSYSLLSEMNPQRLAFLPLVVEMDGGKKICITESDLENYPGMY
                     LINGDKSTSLRSNFATYPASTVQGGHNELQQLVNLREPFIAKCKAGSKFPWRVVIVSD
                     NDKELAGSDMVYKLAAPSRIPDASWVKPGKVAWEWWNNWGLSHVDFEAGVNNQTYMAY
                     IDFASRNNIEYVILDEGWAVNKQADLFQVIPEIDLKKLVDYARSKNVGLILWAGYYAF
                     ERDLEKVCKHYSEMGIKGFKVDFMDRDDQQMVNFYYRAAETAAKYKLMLDFHGAYKPT
                     GLNRTYPNVVNYEGVHGLEQMKWSDIQTDQMTYDVTMPFIRMVAGPVDYTQGAMRNGT
                     KKTFRAVNNEPMSQGTRCHQLAEYVIFDSPLNMLCDSPTNYEKEPECTGFISAIPTVW
                     DNTICLNGEIGKYIAMARQKNNTWYVGSLTNWDKRQLTINLSFLGAGNWEAEIFQDGA
                     NANNIAADYKKQIIDVPADRNLSISMAAGGGCAMKIYKK"
     gene            3059..>4420
                     /locus_tag="VI413_09915"
     CDS             3059..>4420
                     /locus_tag="VI413_09915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding domain-containing protein"
                     /protein_id="HEY6914980.1"
                     /translation="MKYTKVYTFLLLFVISGQILFAGDFMTNVYGRKAQSLNGKWDAI
                     IDLYDQGRKNKIYQNKKPEGKTDFYEYSFDNGLRLNVPSDWNSQNPELKYYEGTVWYA
                     RKFDVQQASSNRLFLYFGAVSYRCRVYLNGKEIGSHEGGFTPFQIEITNQVKTTDNFL
                     AVEVNNSRTADAIPAMAFDWWNYGGITRDVFLISTPQTFIQDYFVQLDKYKADEIDAS
                     FELSGNSANTPVQLEIPELNIKRKCTTNAQGKANLSFNVKRLQCWSPESPKQYKVIIS
                     SDSDRIEEMIGFRNVRVKGTEIYLNDKPVFLKSVSFHEEIPQRKGRAFSEADAAMLLS
                     EAKALGCNMIRLAHYPQNEYTVRLAEKMGFLLWEEIPVWQGIDFENKETRAKAGKMIK
                     EMVQRDKNRCALTFCGVANETQPSAARNEFLKYLINCCREIDTTRLITAAFDLVRFNK
                     EKAV"
BASE COUNT         1383 a          819 c         1029 g         1189 t
ORIGIN      
        1 tacactgaaa gacggtactt tggccattaa tgcaggaacc atgaaaaaga caggatttct
       61 tcgctgccag gtttttttaa caattaatag caaggaatat cagggaatat cgactgtggg
      121 ttttgaaaga gaaagcatcg agccggttac tataatgccg gatgatttta ttagtttctg
      181 ggaaaatgcc aaggctcagg cttcaaaaat tccgatggat attaaaatga cacttgcgcc
      241 ggatagatgt accgaaaagg tggatgtgta tcatgtaaac atacaaaact tcgaaatagg
      301 atctcgctta tacgggatgt taagtgtgcc caaaaaagaa ggacaatatc cagccatttt
      361 aaaagttccc ggagcaggaa tcagatctta cacggggagt gtttcggatg cagaaaaagg
      421 ctatataatt ttcgaaatcg gcattcacgg cattccggta aacctcacag gcgatatata
      481 cacgaacctt tacgaaggtc cattgaaagg atatcatacg tttaacatgg aaaacaaaga
      541 caggtactat tacaaacggg tatacttggg ttgtgtgcgt gctatcgact ttatttattc
      601 attgccgcaa ttcgatggaa agaatctgat aacgctggga ggaagccagg ggggtgcctt
      661 atcaattgtt accgcagctt tggattcgag ggttaaaggg cttgttgcat tctatccggc
      721 gctttgcgac ataacaggct acctacacgg cagggctggt ggttggccgc atatgttcaa
      781 caatccggca aacaataccc cggataaaat tgcaacggcc cggtactacg atgtggtgaa
      841 ttttgcacgg aaaataaaag ttcccggatt ttattcatgt ggttataacg acatggtttg
      901 tccgccaaca actacttttt cggcatttaa ttcaataaaa gcccccaaag aactttgtat
      961 aatggagaac acggcacatt atacttaccc cgaacaatgg aatgaggcct ggaaatgggt
     1021 agcgagtttt tttaataaat aataatacaa gttgatgaga aagttttttt tgatattgat
     1081 cacggtttta tcgggcacgt cactctacgc tcaaaaaagc tatcaggtaa aatcaccgga
     1141 tggtaaattg acggttgtga tatccgtagg taaaactata acctattctt tacttcacga
     1201 aacgcaggag atgatttcat catccccaat ttcaatgcaa ttggaaaatg gtgctgcttt
     1261 tggaaataac tcaaaagtaa aaacggctaa actagtttca gccgatcaaa ttattacaac
     1321 cccattttat aaacgcagca aaatacacga ttactataat gaattgaacc tgagtttcaa
     1381 gaacaacttt tcgttgattt tcagagccta caacgaagga atggcatatc gttttgtttc
     1441 caccggaaag gcagatttta ttgtaaaaaa tgaagaagcc acctttaact tcaacaaaga
     1501 ttacaaagca tatattcctt acgtaaaaac gaatgcaaaa acgattgaag gccagtattt
     1561 caattccttt gaaaacacat attcatattc attgctaagc gaaatgaatc cccaaagatt
     1621 ggcattcctg cctctggtag ttgaaatgga tggcgggaaa aaaatctgta tcacagaatc
     1681 ggaccttgaa aactatccgg gcatgtatct gataaatggc gataaatcga cttctctgag
     1741 atcgaatttt gcaacttatc cggcttctac cgtgcaggga ggccataatg agcttcaaca
     1801 gttggtgaat ctgcgggaac catttatagc caaatgtaaa gctggatcta aatttccgtg
     1861 gcgtgtggtt attgtttcgg ataatgataa agaattggca gggagcgata tggtctacaa
     1921 attggcggct ccgtcacgca tcccggatgc ttcatgggtt aaacccggga aagtggcctg
     1981 ggaatggtgg aataactggg ggctgtcgca tgttgacttt gaagcgggag tgaataacca
     2041 aacttacatg gcctatatcg attttgcttc gcggaataac attgaatatg tgatactgga
     2101 cgaaggctgg gctgtaaata agcaagcaga tttatttcag gttattcccg aaattgattt
     2161 gaaaaaactg gtggattatg cccgttccaa aaatgtagga ttgattctgt gggccggtta
     2221 ttacgcattt gaaagggatt tggaaaaagt gtgcaagcat tattccgaaa tgggtatcaa
     2281 agggttcaaa gttgatttta tggacaggga tgaccagcag atggtgaact tctactacag
     2341 ggcggccgaa actgctgcaa aatataaatt aatgctcgat tttcacgggg cttacaaacc
     2401 tacaggtctg aacaggactt acccgaatgt agtcaactac gaaggagttc acgggttgga
     2461 gcaaatgaaa tggtcggata ttcagaccga ccagatgact tatgatgtta caatgccatt
     2521 tatccgtatg gttgccggtc cggtggatta tacgcagggt gcaatgcgca atggcaccaa
     2581 aaagacattc agggctgtga ataacgaacc gatgagccag ggaacacgct gccaccaact
     2641 ggccgagtat gtgatatttg actcgccgtt gaacatgctt tgcgatagcc ccaccaatta
     2701 cgagaaggaa ccggaatgta ccggttttat atcggccatt cctactgtgt gggataatac
     2761 gatttgcttg aatggcgaaa ttggcaagta tatcgctatg gccaggcaga aaaataatac
     2821 ctggtatgta ggttcgctta ccaattggga taaacgccag ctaacaataa acttgtcatt
     2881 tttgggtgca gggaactggg aggctgaaat ctttcaggac ggagcgaatg ccaataacat
     2941 agctgctgac tataaaaaac aaataattga cgttccagcc gatagaaacc tgagcatttc
     3001 gatggcagca ggtggtggat gtgcaatgaa aatttataaa aaataacttg ctgaatttat
     3061 gaaatataca aaggtttata cctttttact actattcgtg atttccgggc aaatcctgtt
     3121 tgccggcgat ttcatgacaa acgtttatgg tcggaaggct caatcgctca acggaaagtg
     3181 ggatgctata attgatttat acgaccaggg acgcaaaaat aaaatttacc agaataaaaa
     3241 accggagggg aaaacagatt tctacgaata ctctttcgat aacggactga gactgaacgt
     3301 gccatctgat tggaattcgc aaaatccgga actgaaatat tacgaaggaa ctgtttggta
     3361 tgcacggaaa ttcgatgtgc aacaggcttc aagtaaccgg ctattccttt attttggtgc
     3421 agtgagctat cgttgccggg tatatctgaa tggcaaggaa attggaagcc atgaaggagg
     3481 ttttactcct tttcagattg aaattaccaa tcaggttaaa acaaccgata attttttagc
     3541 cgtagaagtg aataacagcc gtactgctga tgcgattcct gccatggctt tcgattggtg
     3601 gaattacggc ggaataacgc gtgatgtttt tttgatttcc actcctcaga ctttcattca
     3661 ggattatttt gtgcagctcg acaaatataa agccgatgaa attgatgcaa gtttcgaatt
     3721 atctggcaat agtgccaata ctccggttca actggaaata ccggaactta acatcaagcg
     3781 gaaatgtaca acaaacgcac aggggaaagc gaatttgtca ttcaacgtaa aaagattgca
     3841 gtgttggtcg cctgaatctc ctaagcagta taaggttatt atttcttcgg atagcgaccg
     3901 gattgaggaa atgattggct tcagaaatgt tcgggtgaaa ggcaccgaga tatatctgaa
     3961 tgataaaccg gtttttctga aatctgtaag ctttcatgaa gaaatacccc aacgtaaagg
     4021 acgggctttt tccgaagcag atgctgcgat gttgctttca gaagcaaagg ctttgggctg
     4081 taatatgata cggctcgcac attacccgca aaacgaatac acggtcaggt tggccgagaa
     4141 gatgggcttt ttgctttggg aagaaatccc ggtatggcag ggaattgatt ttgaaaataa
     4201 ggaaaccaga gctaaagccg ggaaaatgat aaaggaaatg gttcaacggg ataaaaaccg
     4261 ttgtgcgctt acattctgtg gggttgcaaa cgaaacccaa ccgtcggctg cacgtaatga
     4321 atttctgaaa tacctgataa actgttgccg ggaaattgat actacccgct tgattactgc
     4381 tgcctttgac ctggtaaggt ttaataaaga aaaagctgtt
//
LOCUS       DATDNM010000585         2601 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1249613, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000585 DATDNM010000000
VERSION     DATDNM010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1249613"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1872
                     /locus_tag="VI413_09920"
     CDS             <1..1872
                     /locus_tag="VI413_09920"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GH92 family glycosyl hydrolase"
                     /protein_id="HEY6914981.1"
                     /translation="NKLTAEMSPTERGVFIRFTFPQGNDSYVVIDGNSGGSMVKIFPE
                     QHKIVGYCKNANHSVTKDFANYFVIVFDQDFLSSGTWKDNPGDLSPNNSEVAGDYVGA
                     YIGFKKGAVVNAKVASSFISIEQAELNLQQELASAKTLEQIKDKAETAWNKQLGKIEV
                     EGGTAEEKATFYSSFFRSMLFPRQFFEYNGQHKPVYYSPYDYKVHEGYMFTDEGFWDT
                     FRAQFPLNIILHPKMHGQYLQTLLDAYDQSGWLPSWSFPGHSGGMIGNHAFSLFADAY
                     VKGVRTFEPKHALEAMRHDATNKGPRGPSIGRDAANEYQQLGYVSTPQHGEATAKTLE
                     YCYDDFCAMQVAKTSGDKTAEVFFGKTIFNYKNVYDASTRFMRGRQKDGSWLPGFDPM
                     AWGGAFIEGCAWHYQWSVFHDIQGLINLMNGDKNFTAKLDSVFTVPNTFNVGSYGHEI
                     HEMTEMAMINMGQYAHGNQPIQHMPYLYTYAGEPWKTQERVRTIMDKLYNSGPDGFCG
                     DEDQGQTSSWYVISAMGLYSVCPGTDQYVIGSPVFPKMKIHLENGKTITIEAKDNSLK
                     NPYIQSATLNGKAFTKNWISYSDLMKGAVIKYQMSDKPNKFRGIAPEDRPYSVSPGQ"
     gene            1922..>2601
                     /locus_tag="VI413_09925"
     CDS             1922..>2601
                     /locus_tag="VI413_09925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 125 protein"
                     /protein_id="HEY6914982.1"
                     /translation="MKNAKNIAPKWSYTLLLVALFFQITNINAQSFPQVRIEKSKRNF
                     VSTAIDQKIEQMQKTIQDPELAWMFGNCFPNTLDRTVLFSIKDGKPNTFVITGDIYAM
                     WMRDCSAQVWPYMPFMKEDKNLQNLIAGVINRQAESVLIDPYANAFNFGKEGGEWMSD
                     NTAMRPELHERKWEIDGLCYVIRLSYNYWKQTGDLSCFDAKWQSAMELIVKTFKEQQR
                     KTSQGPYK"
BASE COUNT          808 a          532 c          570 g          691 t
ORIGIN      
        1 aacaaattaa cggctgaaat gtcgcccacc gagcgtggcg tatttatacg ttttacgttt
       61 ccacaaggca atgactctta cgtagttatt gatggcaata gcggtggaag catggtgaag
      121 atttttcccg aacaacataa gattgttggc tactgcaaaa atgccaatca ttctgtaact
      181 aaagattttg caaactattt tgtcattgtt ttcgatcagg atttcctatc gagtggaacg
      241 tggaaagata acccgggcga tttgtcgcct aataactccg aagttgccgg cgattatgta
      301 ggcgcttata ttggtttcaa aaaaggagca gtggtaaatg ccaaagttgc ttcttccttt
      361 atcagcattg aacaggctga actaaacctg caacaagaac ttgcgagcgc aaaaacattg
      421 gaacaaataa aagataaagc cgaaacggcc tggaataaac aacttggcaa aattgaagta
      481 gaagggggaa cggccgagga aaaggcaact ttttactcct cttttttccg gtcaatgctt
      541 tttcctcgcc agttttttga atataatggc cagcacaaac cggtttacta cagtccgtac
      601 gactacaaag tacatgaagg atatatgttt accgatgaag gattttggga tacattccgc
      661 gcacagtttc cgctaaacat tattttgcat cccaaaatgc atggccaata tctgcaaacc
      721 ctgcttgatg catacgatca gagcggttgg ttgccatcgt ggtctttccc cggacatagc
      781 ggtggaatga tcggaaatca tgcattttcc ttgtttgcag atgcctacgt gaaaggcgtt
      841 cgcacttttg aaccgaaaca tgcacttgaa gctatgcgtc atgatgccac caataaaggt
      901 ccacgtggcc catcgattgg ccgtgatgct gcaaatgaat atcagcagct cggatatgtt
      961 tcaacgcctc agcatggcga agctactgcc aaaacactgg aatattgtta cgacgatttt
     1021 tgtgccatgc aggtagcaaa gacttcggga gataaaacag ctgaagtatt tttcggaaaa
     1081 actattttca actacaaaaa cgtttatgac gcttctaccc gatttatgcg cggacgacaa
     1141 aaagatggca gttggctgcc gggtttcgat ccgatggcat ggggcggtgc ttttatcgaa
     1201 ggttgcgcat ggcattacca atggtctgtt ttccatgata ttcagggatt gataaacctg
     1261 atgaatggag ataagaattt tacagccaaa cttgattcgg tctttacagt tcccaatacg
     1321 ttcaatgttg gatcttacgg acacgaaata catgaaatga ccgaaatggc tatgataaac
     1381 atgggacaat acgcacatgg aaatcaacct atccagcaca tgccgtattt gtacacttat
     1441 gccggagaac catggaaaac tcaggaaaga gttcgtacaa ttatggataa gttgtacaat
     1501 tcaggtccgg atgggttttg cggtgacgaa gatcagggac aaacttcttc gtggtacgtg
     1561 atcagcgcca tgggtttata ttccgtttgc cccggaacag accaatacgt gattggaagt
     1621 ccggttttcc caaaaatgaa aattcacctc gaaaatggca aaacgatcac cattgaagca
     1681 aaagacaact cgctgaaaaa tccgtatatc caatcggcaa cactcaatgg aaaagcattt
     1741 acaaaaaact ggatcagtta ttccgatttg atgaaaggtg ctgttattaa gtatcaaatg
     1801 agcgataagc ccaacaagtt tagaggaatt gcacccgaag atcgtcctta ctctgtatcc
     1861 cccggacagt aagctgaatt ttaaatcaat aaccttcaaa gtaaatcaaa tagaacacaa
     1921 tatgaaaaac gcaaaaaaca ttgcacccaa atggtcttat acacttttat tagtggcttt
     1981 attttttcag ataactaaca tcaatgctca aagctttcca caggttagga ttgagaaatc
     2041 aaaacggaat tttgtgagta ccgctattga ccagaaaatt gaacaaatgc agaaaaccat
     2101 tcaggatcct gaactggcct ggatgtttgg aaactgtttt ccgaatacac tcgaccgtac
     2161 cgttctgttt tcgattaaag atggtaaacc gaacacattc gtaatcaccg gcgatattta
     2221 tgctatgtgg atgcgcgact gttcagcaca ggtttggcct tacatgccat ttatgaagga
     2281 ggataaaaac ctgcaaaacc ttattgccgg agttattaac cgccaggccg agagtgtttt
     2341 gattgatccg tatgctaatg cattcaattt tggcaaagaa ggtggcgagt ggatgagcga
     2401 caacactgcc atgcgtccgg aattgcacga acgcaaatgg gaaattgatg gtttgtgtta
     2461 cgtaatccgc ctgagctata actattggaa gcaaaccggc gacttaagtt gcttcgatgc
     2521 taaatggcaa agcgctatgg agttgatcgt aaaaacgttt aaagaacaac aacgcaaaac
     2581 ctctcagggt ccttacaaat t
//
LOCUS       DATDNM010000586         2965 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1676202, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000586 DATDNM010000000
VERSION     DATDNM010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2965
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1676202"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..651)
                     /locus_tag="VI413_09930"
     CDS             complement(<1..651)
                     /locus_tag="VI413_09930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6914983.1"
                     /translation="MKIYTRNLKFLFLYLVLACSSVLINAQTYTLKNSPIGGGGFVTG
                     IVSHQTSGDRYCRTDVGGAYRWDATNNKWIQLLDWINESESGFYGVDALAIDPQNANN
                     VYMLCGLDYVNSGRTAILKSTDKGNTFTYTDVTSKFKTHGNGTGRGNGERLAVDPKNS
                     NILFCGSRANGLWKSTDAGVNWNLAWNGVTTTANGNGICFVQFDPSSSVVNGASQTI"
     gene            complement(812..2344)
                     /locus_tag="VI413_09935"
     CDS             complement(812..2344)
                     /locus_tag="VI413_09935"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6914984.1"
                     /translation="MFRKKVLLSTVVIVAFLRGTEFVEAQSNAGKPKMVKENLEEKFA
                     KVSPKLLTNNANPLLDFMFTADPTAVEYNGRIYVYATNDHQQYEHVGKNGKNSYEKIR
                     TLVMMSSDDMVNWTYHGLINTAELAPWSQNSWAPSITSRLEADGKTHFYLYYSNSGIG
                     TAMLTSTSPVGPWSDPLGKNIVDRSVPGVECDAPFDPGVVIDDQGTGWLAFGGGTPKT
                     NYMPGISHIVKLGTDMISLSGNIAKIPAPYFFEASELNFINGTWVYTFNTSWKERTEW
                     PYTNIDKPTICNMSYMTSKTPLSPDSWKYRDNYFKNSGDVNVGPLTNNHTHLFKFKEK
                     YYLAYHAMYLQDYFGTKGGFRNVGIEEMQVDEENVNIPMGKATFKGTSQLNPLNPFVL
                     QQAETTAGTSGQVQFEAVGNVGNMVAKGKADKQCLMVRGADFSKKIPAKFEASVKGKG
                     KIDVYVNNLKGTPLVSLICDGKEWTTISKKIALKIDKGIGNIYFVFNGENFLFDEWKF
                     SY"
     gene            complement(2660..>2965)
                     /locus_tag="VI413_09940"
     CDS             complement(2660..>2965)
                     /locus_tag="VI413_09940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007211447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEY6914985.1"
                     /translation="VIAVNQDALGKQATCIQTIGDLRIYAKELEDGSRAVGFCNFGLE
                     KVDVSYKDLNKLGISGKQKVRDLWRQKDIITIHADKEALSVKVPVHGVALYKFTPVK"
BASE COUNT          842 a          666 c          520 g          937 t
ORIGIN      
        1 aatggtttga ctagctccgt ttaccacact gcttgaagga tcaaattgga caaaacatat
       61 cccgttacca ttagcagtag tagttacgcc gttccatgca aggttccagt taacgccggc
      121 atctgtactt ttccagagtc cgttagccct gcttccgcag aataaaatgt tactgttttt
      181 gggatctacg gcaagacgtt ctccgttccc gcgtccggtc ccatttccat gcgttttaaa
      241 tttggaagtg acatcggtat acgtaaaagt atttcctttg tcggtggatt tcaatatagc
      301 cgttcttccg ctgttcacat agtccaatcc gcagagcata taaacattat tggcattctg
      361 cggatcaatt gccaaagcgt ccactccata aaatccactt tctgactcgt tgatccagtc
      421 gagcagttga atccatttat tgttggtggc atcccagcgg taagctccgc ccacatccgt
      481 tcggcaatac ctatcgccgg atgtttggtg gctaacgata cccgtaacaa atccacctcc
      541 gccgatgggt gaattcttca aggtataagt ctgggcattt attaaaaccg agctacatgc
      601 caaaacaagg tacagaaaaa gaaattttaa attacgtgtg tagattttca tgatttaata
      661 cttaacaatt tgatattatt ctacctttct gtttcaaatt ctgaatcatc tgaactcaaa
      721 aaagtttaat taccttttcg tccttgttgt tatcaccaac aagaaagcct ggtgataaat
      781 aagtgctgtc ggttacaaga ccaacagcgg attaataact aaatttccat tcatcaaaca
      841 aaaaattctc tccattaaat acaaaataga tattccctat tcctttatct attttcagtg
      901 ctattttctt tgagattgta gtccattcct tcccatcaca tataagggaa acaagaggag
      961 tacctttaag attatttaca taaacatcga ttttaccttt tccttttaca ctggcttcga
     1021 atttggcagg aatctttttg ctgaaatcgg ctccccggac cataagacat tgtttgtctg
     1081 cttttccttt ggcaaccata ttgcccacat taccaacagc ttcgaactgg acttgccccg
     1141 aagtgcctgc agtggtttct gcttgctgaa gaacgaatgg atttaatggg ttaagttgtg
     1201 atgtcccttt aaaagttgct ttgcccatgg ggatatttac attctcttca tccacctgca
     1261 tttcttcgat acccacatta cgaaaaccac ccttagtacc aaaataatcc tgtaaataca
     1321 tggcatggta agcaagataa tatttctctt taaacttgaa caggtgcgtg tgattgtttg
     1381 tcaaaggccc cacgttaacg tcgccactat tcttaaagta attgtcgcga tacttccaac
     1441 tatccggact taagggtgtt ttgcttgtca tataagacat gttgcagatg gttggtttat
     1501 caatattggt ataaggccat tcagtacgtt ctttccaact tgtattaaag gtatacaccc
     1561 aggttccatt gataaaattt agttcgcttg cctcaaaaaa ataaggagcg ggaatcttag
     1621 caatattgcc agacaaactg atcatatctg ttcctaattt aacgatatgg gaaatacctg
     1681 gcatataatt tgttttaggc gttccccctc caaaagccag ccagcctgta ccttggtcgt
     1741 caatcacaac tccaggatcg aatggagcat cgcattccac tccgggaaca gagcggtcga
     1801 ctatattctt tcctaatggg tcactccatg ggccaacggg agaggtagaa gtaagcatgg
     1861 ctgtgccaat accgctattg gagtaataca aatagaagtg cgtcttacca tctgcttcca
     1921 gtctggatgt aatggaaggc gcccaggaat tctgactcca tggcgccagc tctgctgtat
     1981 tgataagtcc atgataagtc cagttgacca tatcatctga agacatcatg accagtgtgc
     2041 gaattttctc gtatgaattt tttccattct ttccgacatg ctcatactgt tgatgatcat
     2101 tcgtggcata cacataaatt cttccattgt attctacagc tgtcgggtcg gccgtaaaca
     2161 taaaatctaa taaaggatta gcattattgg tgagaagttt cggcgaaact tttgcgaatt
     2221 tttcttccag gttttcttta accattttag gtttacctgc attactctga gcttctacga
     2281 attctgtacc tctcagaaaa gccacaataa cgactgtgct taacaatact ttttttctaa
     2341 acatgctttt tttattttat ctaataaacg ttattctaaa tttataattg atcggatgaa
     2401 tgattttgaa tatcttactt attgaacttc caccagttga aattgaacag atcgccttga
     2461 ttgcctttaa aaacaaagta cagatcgtaa acatccttta acatatttac gaaaatcttc
     2521 gtaataaatt ttccatctga gtttgtgttt aaaatttatc gacaaaacaa ccacaaccct
     2581 ccatattaag cctatcccaa atgattaaca gtaaacttct ttgctataaa tcgagctcag
     2641 gttaaaagat cttatcctgc tatttaaccg gcgtaaattt gtacagagcc actccatgca
     2701 ccggaacctt caccgaaaga gcctctttgt ccgcatggat tgtaataatg tctttctgac
     2761 gccaaagatc acgcaccttt tgctttcctg aaataccaag cttattcaga tccttgtaag
     2821 agacatccac tttctccagt ccgaaattgc aaaagcctac tgcacgactg ccatcctcca
     2881 attcttttgc ataaatgcgc agatctccga tagtctgaat acaggtagcc tgtttgccaa
     2941 gagcatcctg attaacagca atcac
//
LOCUS       DATDNM010000587         4011 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_713552, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000587 DATDNM010000000
VERSION     DATDNM010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4011
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_713552"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            322..1914
                     /locus_tag="VI413_09945"
     CDS             322..1914
                     /locus_tag="VI413_09945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase"
                     /protein_id="HEY6914986.1"
                     /translation="MKLKSLVVVVVALFSFTSVYAVGKKSKKTEVSERLINVDFTAEK
                     GSLNTFFNECVGAGRANEGLRADWQQQLAYVKKACDFKYIRMHGLLTDDMAVYKEDSK
                     GNPEYNYQYVDALYDYLLSIGVKPFVELGFMPSALASGNKTIFWWRGNVTPPKDYAKW
                     EDLIRNLTQHFTERYGVDEVKTWYFEVWNEPNLSPGFWTGTQEEYLKLYKYSAQAIKS
                     VNQEYKVGGPGTAGAAWESEMIAYCNKNNVPIDFISTHSYGVNQGFLDEYGNSGTVLS
                     KDPMAVSGDVLQSRKEIAASAKPSLELHYTEWSASYTPADPIHDSYHEAAYILEKLKQ
                     VGNAANSMSYWVFTDVFEEPGPRFTPFHGGFGLLNTQGIPKPAFFTYQFLNKLGKTEL
                     KNTDMRSWATKTDNGGMQLLLWDFTYTLPDSINNQVYYIRDLPAKSKGKVKINISNIP
                     AGKYTLEICKVGYRVNDAYTSYVDMGKPKQLSKLQVEELKKQNDGSPILTETIEVKPD
                     TEFSKELEIRENDVFLMNLVRK"
     gene            2265..>4011
                     /locus_tag="VI413_09950"
     CDS             2265..>4011
                     /locus_tag="VI413_09950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6914987.1"
                     /translation="MEDEKRIDNLISVLTVDEKINSLSAGFEIPRLGIRNSGNSEGLH
                     GLSQGGPGYSQKIKTPTTQFPQAIGLAQSWDEDMIRQVAAQQALEARYIYQSPKYYKA
                     GLVVWGPNADMGRDPRWGRTEECYGEDPFLTSRLVTAFVHGMQGDNPRYWLVASLMKH
                     FLSNSNENGRTFTSSDYDDALFREYYSYPFCKGVTDGGSRAYMAAYNAYNGIPCTVHP
                     MLRNITINQWGQNGIITTDGGAFKLLVTDHKYFKTYAEAAAACIHAGINMFLDDYKTA
                     VREALTQKLVTEKDIDSAIRCRFRVLLKLGLLDDNSPYNTIGVNDTIDPWTKPEVKAL
                     ARKITAKSVVLLKNEQALLPLDKQKIKSIALIGPYANQVLQDWYAGGLPYQVSILQGI
                     RNVLGEDVKITSVKSNKIDSAYIAARNSDVAIVCIGNHPTGNAGWEQAPVASDGKEAV
                     DRQALSLELEDLAKVVHAANPKTILLLTSSFPFAINWSQEHLPAILQATHGSQEMGNG
                     VADVLFGNVNPAGRLVQTWPRFIDDLPPMMDYDIRHGRTYMYSQKTPLYPFGFGLSYT
                     SFSYSNLQLSQQSTGR"
BASE COUNT         1219 a          702 c          908 g         1182 t
ORIGIN      
        1 ggtttgcgaa aatgacaatc aaaacacttg atgctgacca tatgcaactt attgcaaaaa
       61 aagatcctaa taattggcta gtatataatt atatttctaa agattattac gattctcatt
      121 aattgagtta ttagttgata atagtttcat gaggctgatt gttcctggtg cacagacgca
      181 gccagcctct ttttttcatt ttatggataa aacattatca tagtttaaat taattttgtt
      241 gaataatttc aaaactcttt tttttattaa gttattttct tgttttgaac ctgaagttaa
      301 aagtgttatt tattattagg tatgaaatta aaaagtttag tagttgttgt ggtagctctg
      361 ttttcattta cttcggttta tgcagtcggg aaaaagagca aaaaaacaga agtgtcggaa
      421 cggttgatta acgtggactt tactgccgaa aaaggatctc taaatacttt tttcaatgaa
      481 tgtgttggag ctggtcgtgc caatgagggc ttgcgagccg attggcaaca gcaacttgct
      541 tatgtaaaga aagcttgtga ttttaaatac atccgtatgc acggtctgtt aactgatgat
      601 atggctgttt ataaagaaga cagcaaagga aatcctgaat acaattatca atatgtcgat
      661 gctttgtacg attacctgtt gagtattggg gttaagccat ttgttgaatt aggatttatg
      721 ccatctgcat tggccagtgg caacaaaact attttttggt ggagaggaaa tgtaactccg
      781 ccgaaagatt acgctaaatg ggaagattta atccgtaatt tgacccaaca ttttacggaa
      841 cgttacggag ttgacgaggt gaaaacctgg tattttgagg tttggaacga acccaacctt
      901 tcacccggat tctggaccgg aacacaagag gaatatttaa aattatacaa gtattcggct
      961 caagctatca aaagcgtaaa tcaggaatat aaagtgggtg gacccggaac agcaggtgcc
     1021 gcgtgggaga gcgaaatgat agcgtattgc aacaagaata atgttccgat tgattttatt
     1081 agcacccact cgtatggagt gaatcaggga tttcttgatg aatatggtaa cagtggtaca
     1141 gtattgagca aagatccgat ggctgtaagt ggagatgtac ttcaatcccg caaagagatt
     1201 gctgcttctg caaaaccaag cctggagttg cattataccg aatggagtgc atcttacact
     1261 cctgccgatc cgatacacga cagttatcac gaagctgcct atattttgga aaaactaaaa
     1321 caggttggta atgctgccaa ttctatgtct tattgggtgt ttacagatgt ttttgaagaa
     1381 cctggccctc gctttactcc ttttcacgga ggatttgggt tgctcaatac gcagggtatc
     1441 ccgaaacctg ccttttttac ctatcagttt ttgaataaac tgggtaaaac ggaattgaaa
     1501 aacacggata tgcgctcgtg ggcaacgaaa actgacaatg gtggtatgca attgctgtta
     1561 tgggatttca catataccct tccggactct attaataatc aagtgtatta catccgcgat
     1621 ttaccggcaa aatcaaaagg caaagtaaaa ataaatatat ccaatatccc tgccggaaaa
     1681 tatacgttgg agatttgcaa ggtcggatat cgggtgaatg atgcttacac cagttatgtt
     1741 gatatgggaa aaccaaaaca acttagcaaa ctgcaggttg aggaattgaa gaaacaaaat
     1801 gatggttctc ctatcctgac tgaaacaatt gaagtgaagc cggataccga attctcaaaa
     1861 gaacttgaaa taagagagaa tgatgtgttt ctgatgaatc tggtgagaaa gtgatagttg
     1921 agatagtttt ttgtagtaag aaaaaatgta ttaatacgaa atttaacgat agttttccgt
     1981 aaattaatga taggttagta gttttattga atttttaata aagcttctat ggagattaca
     2041 ggtgtaatca tattgtgtgt ttagtttttg aaaaatttag tttgtttgtt tactttttat
     2101 tgacgtttaa ttttttttgt cattaaaacg gaaatatcgt ttgtaattat tgattgcctt
     2161 gatatcttat ttaatactaa atgaataaat tatttttagt agtttgttgt ttcttctctt
     2221 tgtgcatttt tgctcagaag aactattctt ttaaaaatcc caaattggag gatgaaaaaa
     2281 gaattgataa ccttatttcc gtacttacag ttgacgaaaa aatcaacagc ctgagtgccg
     2341 ggtttgaaat accgcgatta ggaatcagga atagtggcaa cagtgaaggg ctgcacggac
     2401 tgagtcaggg tggtccagga tatagtcaaa aaataaaaac tccgactacc cagtttccgc
     2461 aagctatagg gttggcgcaa agctgggacg aagatatgat caggcaggtt gcagcacagc
     2521 aggctttgga ggcacgctat atctatcaaa gtcccaaata ttacaaagcg ggattggtgg
     2581 tttggggacc caatgccgat atgggtcgag atccacgttg gggtagaact gaggaatgct
     2641 atggtgaaga tccgtttctg acttcacgat tggtaaccgc ttttgtgcac ggtatgcaag
     2701 gcgataatcc ccgatactgg ctggtggctt cgctaatgaa gcatttcctc tccaatagta
     2761 atgagaatgg gcgtactttt acctcttctg actacgacga tgcacttttc cgggaatact
     2821 attcttatcc attttgcaaa ggtgtgactg atggtggctc acgtgcatac atggcagcat
     2881 acaatgctta taacggaatt ccatgtacgg ttcatcccat gcttaggaat attacaataa
     2941 accaatgggg tcaaaacggg ataattacga ccgatggagg tgcattcaag cttcttgtta
     3001 ccgatcacaa atatttcaaa acctacgcag aagctgctgc cgcatgcatc cacgccggta
     3061 tcaatatgtt tttggatgat tataaaacag ctgttaggga agcgttaacg caaaaacttg
     3121 ttacggaaaa agatattgat tcggctatac ggtgcagatt cagggtacta ttaaagttag
     3181 gattactcga cgacaactcg ccctacaaca ctatcggggt aaatgatact atcgaccctt
     3241 ggacgaagcc cgaagttaaa gcattggctc ggaaaattac agcaaagtct gtggtgctgt
     3301 tgaaaaacga acaagcatta ctcccgttgg ataaacagaa aattaagtca attgccttga
     3361 ttggacccta tgccaatcag gtgttacaag actggtacgc aggaggacta ccttatcagg
     3421 tatcaatttt acagggaatc cgaaatgtac tcggagaaga tgtgaagatt acttctgtaa
     3481 aaagcaacaa aatagattcg gcgtatattg cagccaggaa cagcgatgtg gcgatagtat
     3541 gtatcgggaa tcatcctacg ggcaatgccg gttgggaaca agccccggtg gccagtgatg
     3601 gcaaagaagc ggttgaccgg caagcgcttt ctcttgaact tgaagacctg gcaaaggttg
     3661 tacatgcggc caatccaaaa acgatattgt tgttgacaag cagtttccca tttgctatca
     3721 attggtcgca agagcatttg ccggccatcc ttcaggctac acacggtagc caggaaatgg
     3781 gtaatggtgt ggccgatgtg ttgtttggaa atgtgaatcc tgccgggcgg ttggtgcaga
     3841 catggcctcg cttcatcgac gatttgcctc cgatgatgga ttatgacatc cgtcacggca
     3901 gaacttatat gtatagtcaa aaaacaccgc tttatccgtt cgggtttggt ttgagttata
     3961 cgagcttcag ttactctaat cttcaactga gtcaacaaag cacaggccgg g
//
LOCUS       DATDNM010000588         2537 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_713592, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000588 DATDNM010000000
VERSION     DATDNM010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_713592"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..355)
                     /locus_tag="VI413_09955"
     CDS             complement(<1..355)
                     /locus_tag="VI413_09955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythronate-4-phosphate dehydrogenase"
                     /protein_id="HEY6914988.1"
                     /translation="MKIIIDDKIPYIHGAFESVAEVVYLPGSKTTPEIAKDADAIVTR
                     TRTICNEKLLAGSSVKFIATATIGFDHIDTDYCETNGIQWTNAPGCNSKSVEQYIAST
                     IMVLAEKNGWNLSEKC"
     gene            complement(401..775)
                     /locus_tag="VI413_09960"
     CDS             complement(401..775)
                     /locus_tag="VI413_09960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013063777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HEY6914989.1"
                     /translation="MTTEELKKRLKVFALRIIKLSESLPNNITGKTLGNQIIRSGTSP
                     GANYRSACLGKSDKDFLNKFKMVEEELDETLYWLELIVESGLIKEELLKDLMIENHEL
                     LKIIVSSIITMKKKLNSTESKK"
     gene            complement(810..2099)
                     /locus_tag="VI413_09965"
     CDS             complement(810..2099)
                     /locus_tag="VI413_09965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate racemase domain-containing protein"
                     /protein_id="HEY6914990.1"
                     /translation="MLYYEIGSINHELNGEDLKKGLFEALGKIGEKHKVLAIPPDYTR
                     LPSRSGELTEFVWQFYGDALTDVLPALGTHSPMTPHQISHMFGTLPASLIREHDWRND
                     VVTVGYVPAEFVKEVSGGAVEFPWPAQVNKLLLEGNFDLILSIGQVVPHEVVGMANYN
                     KNIFVGTGGVEGINKSHFVGAAYGMERMMGHADTPVRRIFNYASDNFTNNLPIVYVQT
                     VVGLDKSDGKIKTRGLYIGDDFEVFDKAAKLALQVNFEMLDKPLKKVVVYLDPTEFKS
                     TWLGNKSIYRTRMAIEDNGELIVLAPALKEFGEDKEIDRLIRKYGYLGTPHTLKDCDE
                     NEELRNNLSAAAHLIHGSSEGRFNITYCPGKGAENLTRTEIESVGFKYADIDEVTAKY
                     DPAKLRDGYNTMSDGEEIFYISNPALGLWAFKDRFRY"
     gene            complement(2188..>2537)
                     /locus_tag="VI413_09970"
     CDS             complement(2188..>2537)
                     /locus_tag="VI413_09970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014226378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEY6914991.1"
                     /translation="IGRVKQAFPKASVYATTLRQVISTNEHLWGAIMLDGETWNVIEP
                     RKINVLDRIGGGDGFVGGMLYAILKGWESEKWAQFGWASGALATTFLTDYAQPADEDQ
                     IWSIWGGNARVKR"
BASE COUNT          726 a          580 c          437 g          794 t
ORIGIN      
        1 tacatttttc actcaggttc cagccatttt tttcggccag taccataatt gtagaagcaa
       61 tatattgctc taccgattta gaattgcagc ccggtgcatt agtccactga atgccgtttg
      121 tttcgcaata atcggtatca atatgatcaa aaccaatggt agctgtagca atgaatttca
      181 ccgaagaacc ggcaagcaat ttctcgttgc aaatggtgcg ggtacgggtt acaatagcat
      241 cagcatcttt ggctatctcc ggcgttgttt ttgatccggg caaatatact acttcagcaa
      301 cgctttcgaa agcaccgtga atgtatggaa ttttatcgtc tataataatc ttaatcattt
      361 actattttat catttaccat ttactatttg ttagctcaat tcactttttc gattcggttg
      421 aattcaattt cttcttcatt gttattattg aactgacaat aatcttcaat aattcatgat
      481 tctcaatcat taaatcttta agtaattctt ctttgattaa gcctgattcg actattaatt
      541 ctaaccaata taatgtttca tctaattctt cttcaaccat tttaaatttg ttaaggaaat
      601 ctttatcaga tttaccaaga caagctgatc gataatttgc acctggagaa gttcctgaac
      661 gaataatctg attacctaaa gttttaccag taatattgtt tggcaaactt tctgagagtt
      721 taataattct caatgcaaaa accttcaatc tcttttttaa ttcctcagtt gtcatatcct
      781 aaaatagtaa atggtaaatg aaaaaatagt caatatctga acctgtcttt aaacgcccac
      841 aagcccagtg caggattcga aatatagaat atttcttcac catctgacat cgtattataa
      901 ccatcccgaa gttttgccgg atcatattta gctgtcactt cgtcaatatc tgcatacttg
      961 aatccaacac tttcaatttc ggttcgggtc aggttttcgg caccttttcc cggacaatac
     1021 gttatgttga aacgaccttc ggacgaacca tgaataagat gagcagcagc actcaagttg
     1081 ttgcgcagtt cttcattctc gtcgcaatct ttcaaagtgt gtggcgttcc cagataacca
     1141 tatttccgaa tcaaacggtc aatttccttg tcttctccaa attctttcag agccggagcc
     1201 aggacaatca attctccgtt gtcttcaata gccatgcggg tacggtaaat tgatttattt
     1261 ccaagccacg tacttttgaa ttctgtcggg tcaagatata ccaccacttt ttttaatggt
     1321 ttgtccaaca tttcgaagtt tacctgcaat gccagtttag ccgctttatc aaatacttca
     1381 aaatcgtcgc caatatacaa gccacgcgtt ttgattttac catccgattt atcgagtcca
     1441 accaccgttt gtacataaac aatcggcaaa ttgttggtaa agttatccga agcataattg
     1501 aagatgcgac gaacaggcgt atctgcatga cccatcatac gctccattcc gtaagctgca
     1561 cccacaaaat ggcttttatt gataccttcc actccaccag tcccaacaaa gatattcttg
     1621 ttgtagttgg ccattcccac cacttcgtgc ggtacaacct ggcctatgga cagaattaaa
     1681 tcaaaattgc cctccaaaag tagtttattt acctgagccg gccaaggaaa ttcaacagca
     1741 ccacccgaaa cttcttttac aaattcggcc ggaacataac caacggtaac tacatcattg
     1801 cgccagtcgt gttcacgaat aagcgatgcc ggcaacgtgc caaacatgtg cgaaatttga
     1861 tgcggagtca taggtgaatg cgttcccaaa gcaggaagta catcggtcaa tgcatctccg
     1921 tagaattgcc atacaaactc agtcagttca cctgagcgac ttggtaaacg tgtataatca
     1981 ggtgggatag caagcacctt gtgcttctct cctatttttc ccaatgcttc gaaaagtccc
     2041 tttttcaggt cttctccatt gagttcgtgg tttatggaac caatttcgta gtataacatc
     2101 ttttgattta ggattttaaa tctacaattt acgattggac taagaaaaac tcgagtcaat
     2161 cgtaaatcat aaatcgtaaa tttaaaatta tctttttaca cgcgcatttc cgccccagat
     2221 actccagatt tgatcttcgt cggcaggttg tgcgtagtcg gtcaggaatg tagttgccaa
     2281 tgctcccgaa gcccagccaa actgagccca tttttcagac tcccagccct tcaggatagc
     2341 gtaaagcatt ccacccacaa aaccgtcgcc accaccaatg cggtcgagaa catttatctt
     2401 gcgtggttca attacattcc atgtttcacc atcaagcata atagcacccc agagatgttc
     2461 gttggtactg ataacctggc gaagtgtagt tgcataaaca gaagcttttg ggaatgcttg
     2521 tttcacacgg ccaatca
//
LOCUS       DATDNM010000589         2017 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1781818, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000589 DATDNM010000000
VERSION     DATDNM010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1781818"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..311)
                     /locus_tag="VI413_09975"
     CDS             complement(<1..311)
                     /locus_tag="VI413_09975"
                     /inference="COORDINATES: protein motif:HMM:NF039827.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5687 family protein"
                     /protein_id="HEY6914992.1"
                     /translation="MLFLNLIKHEWQKSVRAQGFYKNLVVSLMLGFFGLYMASILLFL
                     GFSLDEILEKVHNTLNPLELVNGAMLYIVLLGLSFRFFMQQLNTFNLPPYQVLPVKRS
                     S"
     gene            complement(430..954)
                     /locus_tag="VI413_09980"
     CDS             complement(430..954)
                     /locus_tag="VI413_09980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEY6914993.1"
                     /translation="MALIKSVRGFTPQIGRDCYLAENSTVVGDVVMGDGCSVWFNAVL
                     RGDVNSIRIGNHVNIQDGSVLHTLYEKSTVEIGDYVSIGHNVTVHGAKIDDYALIGMG
                     AILLDYAEVGEGAIVAAGALVLSNTKIPPFTLWAGVPAKFVKNVEPEQTHEMNRKIAH
                     NYSMYAGWYKYGEK"
     gene            1145..1693
                     /locus_tag="VI413_09985"
     CDS             1145..1693
                     /locus_tag="VI413_09985"
                     /inference="COORDINATES: protein motif:HMM:NF018684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HEY6914994.1"
                     /translation="MKQFLFVLFALLICPFSYGQNNGPEEITPGRLQTIKAAVDKQAN
                     RFKVKLVSNKELTKEQIEFSVDTFKIERIAAKCIEIDYSTMGMVQIIDELTASYDILL
                     NKYYKRLLNALKEEDKKTLIAAQKAWIGYRDAEAKLIGTMTKEEYSGGGTIQSNIATG
                     SYSDLVIKRANEIFNYYNEMEK"
     gene            complement(1772..>2017)
                     /locus_tag="VI413_09990"
     CDS             complement(1772..>2017)
                     /locus_tag="VI413_09990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007214211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEY6914995.1"
                     /translation="SCNRTGYEADPSGVTNGIQFWGNSFVAGPQGEFLAQASNDKEEN
                     LMLDIDLKRSENVRRWWPFFRDRRIDAFGDLTKRWRD"
BASE COUNT          733 a          416 c          303 g          565 t
ORIGIN      
        1 aatgaagatc gttttaccgg caaaacctga taaggtggta agttgaaagt attcaactgt
       61 tgcataaaaa aacgaaatga caaccctaac agcacaatat acaacattgc accatttacc
      121 agctccaatg gattcaaggt attgtgcact ttttcaagta tttcgtcgag cgaaaaaccg
      181 agaaacaaaa gtatagaagc catatataag ccgaaaaagc ctaacatcaa gctaacaact
      241 aaattcttgt aaaaaccttg agctctgaca cttttctgcc actcgtgttt aatcaaattc
      301 agaaacagca tattttttct tttaggaatt taaaagcaca aagataaaaa acaattattg
      361 cagcacaact atattttatt gattatcgat aaaatacaaa gaagaaagaa gaggcaacaa
      421 taaagtcatt tatttttctc cgtatttata ccaaccagca tacatagagt aattatgggc
      481 aattttgcga ttcatttcgt gagtttgttc cggttcaaca ttcttcacaa atttagcagg
      541 aacacctgcc caaagggtaa acggcggaat ttttgtattg ctcaacacca gcgctccggc
      601 agcaacgatc gcaccctcac ctacttcggc ataatcaagc aaaattgcac ccatacctat
      661 taaagcataa tcatcaattt ttgctccatg caccgttaca ttatgaccga tagagacata
      721 atcgccaatt tccactgtcg atttttcata caaagtatgc aacacagagc catcttgaat
      781 attcacatgg ttacctattc ttattgaatt aacgtcacca cgcaacactg cattaaacca
      841 aacactgcaa ccatcaccca taactacatc ccccacaaca gttgaatttt cagccagata
      901 acaatctctg cctatttgag gagtaaatcc cctcactgat tttattaaag ccattttatt
      961 tacgattaaa agttcgtact cataattaga gcaacaaaga tacaggactt aaaagaattt
     1021 cgaaaaagga aagtatatta ttttgcaaaa aactaaaggc aactatattt gcaacaattt
     1081 taactacaca ttaggtaata atcaataaaa caattaattt tgacaaaaaa accaatatta
     1141 caccatgaaa caatttttat ttgtgctatt tgcattattg atctgtccat tttcatatgg
     1201 tcaaaacaat ggtcctgaag aaattactcc aggaagactt caaacaatta aagctgcagt
     1261 tgacaaacaa gctaaccggt ttaaagtaaa actagtttct aataaagaac taacaaaaga
     1321 gcaaattgaa ttttctgtag atacctttaa aattgaacga attgcagcta aatgcattga
     1381 aattgattat tcaacaatgg gaatggtcca aatcattgac gaactcactg cttcttatga
     1441 tattctattg aataaatact acaaaagact attaaatgca ttaaaagaag aggataaaaa
     1501 aacattgatt gctgcacaaa aagcatggat aggctatcgc gacgcagaag caaaacttat
     1561 tggcacaatg acaaaagaag aatattcagg cggaggaaca attcaatcta atattgcaac
     1621 aggttcgtat tctgaccttg tcattaaacg agcgaatgag atattcaact attacaacga
     1681 aatggaaaaa taattaaaaa ggaagaccgg cttcaaaact ctttctgaaa gcgaccttcc
     1741 tttttcattc gtacattatc tcattcgcac atcaatccct ccatcttttg gtcaaatcgc
     1801 caaatgcgtc aattcgcctg tcgcggaaaa aaggccacca acgacgcaca ttttccgatc
     1861 gtttcaggtc aatatccaac attaggtttt cttctttgtc gttggaagcc tgtgccaaaa
     1921 attcgccctg tggtccggcc acaaaactgt ttccccagaa ttgaattcca ttagttacac
     1981 ccgatgggtc tgcttcatag cccgtacgat tacaact
//
LOCUS       DATDNM010000590         4880 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1676303, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000590 DATDNM010000000
VERSION     DATDNM010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4880
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1676303"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1869)
                     /locus_tag="VI413_09995"
     CDS             complement(<1..1869)
                     /locus_tag="VI413_09995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NPCBM/NEW2 domain-containing protein"
                     /protein_id="HEY6914996.1"
                     /translation="MNTASKNIFSIAFALIAVFSISTLSAQTIWLDQLDLSPATQGWG
                     IPKKNKTVDDNIMTIAGKTFERGFGTHAESSLFIQLDGKANSFTAQVGVDDEVKGREP
                     AVEFIVYGDGAKLWSSGVMREDDIARLCNVKLSGVKKLELRVTDGGNSNSSDHADWAD
                     AKFEAVGVASFATFYPVPSEPYILTPQPSAKPKINSASVFGVRPGSPFQFRIPATGDR
                     PMSFQVIGLPQGLQLDQKTGLITGKLEKDGTYAVQLKAKNTKGRAEKSLRIICGDKIA
                     LTPQMGWNSWNCFAHEVSGEKIKRAAEVMVKSGLVNYGWTYVNIDDYWQNNRDSKDPS
                     LQGRLRDEAGTIVPNKKFGDMKALTDYVHGLGLKIGIYTSPGPWTCGGCAGSYGYEKQ
                     DAETYAKWGFDYLKYDWCSYGGVLNGIPDNDPNKVISISYNGGYQLSTAVKPYKLMGD
                     YIRQQPRDIVFSLCQYGLSDVWKWGDSVGGNSWRTTNDITDNWSNVKSIALAHDQSAA
                     WAKPGNWNDPDMLVVGHVGWGSPHPSLLRPDEQYLHVSLWSLFSAPLLIGCDLEKLDA
                     FTLNLLTNDEVIAVNQDALGKQATCIQTIGDLRIYAKELEDGSRAVGFCNFGLEKVD"
     gene            complement(1969..4404)
                     /locus_tag="VI413_10000"
     CDS             complement(1969..4404)
                     /locus_tag="VI413_10000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008630309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6914997.1"
                     /translation="MYKLNSNTNKSYYTKLRASVFVLLASCFFSCYAQNIAGIERKQL
                     FDNDWKFFLGDPLTAASKKINEKNWRKLDLPHDWSIEGKIDRKNPTGKDGGYFPAGVA
                     WYRKTFKVPQEWKGKNVSIYFEGVYMNSEVFINGVSLGTYPYGYSSFSYNLSPHLAFG
                     QENVIAVRVDNSQHKNSRWYSGSGIYRHVWMMVTDAVHVANWGVAITTPEVSSKEASV
                     LIKTLVENETSSPQNIILKTQILAGNSKSVADNQTKVQLPARSKQEVIQIIKVLNPLL
                     WTPESPGLYQAQVQIIKDNKVVDDTKTNFGIRSIKFTAENGFQLNGKTVKINGGCVHH
                     DNGCLGSAAFDRAEERKIELLKSSGFNAVRTSHNPPSETFLNACDKLGLLVLDESFDC
                     WKWKKNEHDYSKYFEMWWQRDLEAMVKRDLNHPSIIMWSIGNEIVERGEPQAVETAAM
                     LAKALKKIDNTRPVTSAVCELNDKPWTIFDSLFAVHDVAGYNYKMNNAPDDHKRVPSR
                     IILQTESFAKDAFDNWKMVQNNNYVIGDFIWTAIDYLGESGIGGWYYTVDAPEMYPWH
                     GGYCGDIDVMGWRKPISHYRNLLYNNTEKLYMAVREPEKPSLEIKGNWWTSGPTWESW
                     TWPEFEGKNVQVEVYSKYPKVRLYLNDKLIEEKATAEEQQFKATFSVPYSPGILKAVG
                     VENEQEIESKVLQTSGDVARIKLTVDRKEILANGQDLSYVTIELTDKNGIIQPNAANP
                     LQFKIKGPGIIAGVDNADLQDFDQYIGNSRKAWKGRALVVIRSTHNVGDIKLTISSPG
                     LPEAVLNVKTVKP"
     gene            complement(4575..>4880)
                     /locus_tag="VI413_10005"
     CDS             complement(4575..>4880)
                     /locus_tag="VI413_10005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007211447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEY6914998.1"
                     /translation="VIAVNQDALGKQATCIQTIGDLRIYAKELEDGSRAVGFCNFGLE
                     KVDISYKDLNKLGISGKQKVRDLWRQKDITTIHADKEALSVKVPVHGVVLYKFTPVK"
BASE COUNT         1311 a         1166 c          892 g         1511 t
ORIGIN      
        1 atccactttc tccagtccga aattgcaaaa gcctactgca cgactgccat cctccaattc
       61 ttttgcataa atgcgcagat ctccgatagt ctgaatacag gtagcctgtt tgccaagagc
      121 atcctgatta acagcaatca cttcatcgtt tgtcaataaa ttcagggtaa aggcatccag
      181 cttttccaaa tcgcaaccaa ttagcagagg cgcagagaaa aggctccaaa ggctgacgtg
      241 aagatactgc tcatctggtc taagcaagct cggatgcggg ctaccccagc ctacatgacc
      301 tacaaccagc atgtccggat cgttccagtt accgggttta gcccatgctg cagactgatc
      361 atgagccaat gcaatgcttt taacgttgga ccagttgtcc gttatatcat tcgttgtacg
      421 ccagctgttt ccacctaccg aatcgcccca tttccaaaca tccgacaatc cgtactgaca
      481 caagctgaaa acaatgtcgc ggggttgctg acggatataa tctcccatta gtttgtatgg
      541 tttgacggcg gtagacaatt gataacctcc attgtaagat atggagatta ctttgtttgg
      601 gtcgttatca ggtattccat ttagcactcc tccatagctg caccaatcgt atttcagata
      661 atcgaaaccc catttggcat aagtttcggc atcttgcttt tcataaccat aactacctgc
      721 acagccacca caggtccaag gaccgggact ggtatagatg ccgatcttca aaccgagacc
      781 atgcacatag tctgtcaggg ctttcatatc tccaaacttt ttattaggaa ctatagtacc
      841 agcctcgtcc cgcagcctgc cttgcaggga aggatctttc gaatcgcggt tattttgcca
      901 gtagtcgtca atatttacat aagtccatcc gtaatttaca agtccgcttt tcaccattac
      961 ttctgcagcg cgcttaattt tttcaccaga aacttcatga gcgaaacaat tccagctatt
     1021 ccaacccatt tgcggggtta gtgcaatttt atcaccacag ataatgcgta aacttttttc
     1081 ggctctgcct ttcgtattct ttgccttcaa ttgaacagcg taagtaccat ctttttcaag
     1141 cttaccggtg ataagtcctg ttttttgatc cagctgtagt ccctgaggca ggccgataac
     1201 ctgaaagctc attggacggt ctccggtggc aggtatcctg aactgaaacg gcgagcccgg
     1261 gcggacaccg aaaacgcttg cgctattgat cttcggtttt gcagatggtt gaggggtaag
     1321 aatatagggc tcacttggga caggataaaa agtagcaaaa cttgccacac caaccgcctc
     1381 aaattttgca tctgcccagt cggcatgatc gctgctgtta ctgtttcctc cgtctgttac
     1441 ccgcagctca agttttttca cacccgaaag tttcacatta catagacggg caatatcatc
     1501 ttcacgcatt acaccgctcg accaaagctt cgctccatcg ccgtatacaa taaactctac
     1561 agcgggctca cgccctttca cctcatcatc aacgccaacc tgcgcggtaa acgaatttgc
     1621 cttaccatcg agctgaataa aaagagagct ttctgcgtgt gtgccgaagc cacgctcaaa
     1681 tgttttgcct gcaatggtca tgatgttgtc atcaaccgtc ttgttttttt taggtatgcc
     1741 ccagccctgt gtagctgggc tgagatccag ttgatctaac caaatagttt gtgcggaaag
     1801 agtacttatg ctaaaaactg caataagtgc gaaggcaata gaaaatatat ttttacttgc
     1861 tgtattcatt tttaattgat tgaatgcgag caaagggcgt aaacactctt tgtcgttcta
     1921 tttctgtttc tttttttagt attcttcaat aaatcttttt tactcaaatc agggcttaac
     1981 tgttttgaca tttaaaacag cctcaggtaa acccggcgaa cttatggtaa gcttaatatc
     2041 gccaacattg tgcgtacttc taatgaccac caacgctcgt cccttccatg ctttgcgtga
     2101 attgccaatg tattgatcga agtcttgcaa atcggcatta tcaactccgg caattatacc
     2161 cggaccttta attttgaatt gcaaagggtt cgcggcattc ggttgaatta ttccattttt
     2221 gtctgttaat tctattgtta cataagacaa gtcttgtcca tttgccaata tttctttccg
     2281 atcaacagtt agttttattc ttgcaacatc cccggaagtt tgcagaactt ttgattcaat
     2341 ttcctgttca ttttctacac ccacagcttt taaaataccg ggtgaataag gcacagaaaa
     2401 tgtagcttta aactgctgct cctcagccgt tgctttttct tcaatgagtt tgtcattgag
     2461 ataaagtcga actttgggat attttgaata aacttcaacc tgaacatttt tcccttcaaa
     2521 ctccggccat gtccagcttt cccaggtagg ccctgacgtc caccaattgc ctttaatttc
     2581 caaagaaggt ttttccggct cgcgtactgc catatataat ttttcggtat tgttatataa
     2641 cagatttcga taatgtgaaa taggttttct ccaacccatc acatctatgt cgccgcaata
     2701 gcctccatgc catggataca tttcgggtgc atcaacagta taataccaac cgcctattcc
     2761 tgattctccc agataatcta tcgctgtcca tataaaatct ccgataacat aattattgtt
     2821 ttgcaccatc ttccaattgt caaaagcatc tttcgcaaac gactctgtct gaagaataat
     2881 acgcgaagga actctcttat ggtcatccgg tgcgttgttc attttgtaat tataaccggc
     2941 aacatcgtgt accgcgaaca gcgaatcaaa aatagtccag ggtttatcat ttaactcaca
     3001 cacagcggat gtaacaggac gggtgttatc tattttcttc agcgcttttg caagcattgc
     3061 agcggtttct acagcttgag gttcgcccct ctccactatt tcattgccta tgctccacat
     3121 aataatcgaa ggatggttca ggtcccgttt aaccattgct tccaagtcac gttgccacca
     3181 catttcaaaa tatttggaat aatcatgctc gttttttttc catttccagc aatcaaatga
     3241 ttcatccagc accaacaggc ctaatttatc acaagcgttt aaaaaagttt cggaaggggg
     3301 attatgtgaa gttcttactg cattgaagcc cgaggattta agtaactcaa tctttctttc
     3361 ctccgcacga tcaaaagcgg ctgagcccag gcagccattg tcatgatgta cgcagcctcc
     3421 atttattttt actgttttcc cattaagttg aaaaccgttt tctgcagtaa actttataga
     3481 acgtattcca aaattggttt tcgtatcatc cacaaccttg ttatctttta ttatctgcac
     3541 ctgtgcttgg tacaaaccgg gagattccgg tgtccacagc aaaggattta aaaccttgat
     3601 gatctgtata acttcctgtt tgctcctggc aggtaattgt accttcgttt gattatccgc
     3661 aacgctttta gaatttccag ctagtatctg ggttttaagg ataatatttt gaggcgaact
     3721 tgtttcattc tctactaaag tttttatcag aacgcttgcc tcttttgaag acacctcggg
     3781 agttgtaatg gctacgcccc aattggcaac atgcacagcg tcagtaacca tcatccagac
     3841 atgccgataa atacctgaac cactgtacca gcggctgttc ttatgttggg aattgtccac
     3901 ccttactgca atgacgtttt cctggccaaa agcaagatga ggcgaaaggt tataactaaa
     3961 cgatgaatag ccataaggat atgttcccag cgataccccg ttaataaaca cttcggaatt
     4021 catgtaaacc ccctcaaaat aaatggaaac atttttacct ttccattctt gaggaacttt
     4081 gaaagttttc cggtaccatg ctacaccggc cggaaaatat cctccatctt tccctgtcgg
     4141 atttttacga tctatttttc cttcaatact ccagtcgtgt ggtaagtcga gcttacgcca
     4201 attcttctcg ttgatttttt tcgatgcggc tgttaaagga tcccctaaaa agaatttcca
     4261 atcattatca aataactgct ttcgctcaat gccagcaata ttttgcgcat aacatgaaaa
     4321 aaagcagctt gccaaaagca cgaacaccga tgctcttagt tttgtataat aggatttgtt
     4381 tgtatttgaa tttagcttgt acatatttgt tacatttatg aagatgcttg cctaagaaat
     4441 tatttattgg ttatcgtatt ttttaaactc ttaatttact tcacttatct gacaaaatat
     4501 attcattaga taaatgaaag gcttataaag cttctttgct attaaatcga gttcaggtaa
     4561 gaaatcctat cctgctattt aaccggcgta aatttgtaca gaaccactcc atgcaccgga
     4621 accttcaccg aaagagcctc tttgtccgca tggattgttg taatatcttt ctgacgccaa
     4681 agatcacgca ccttttgctt tcctgaaata ccaagcttat tcagatcctt gtaagagata
     4741 tccactttct ccagtccgaa attgcaaaag cctactgcac gactgccatc ctccaattct
     4801 tttgcataaa tgcgcagatc tccgatagtc tgaatacagg tagcctgttt gccaagagca
     4861 tcctgattaa cagcaatcac
//
LOCUS       DATDNM010000591         2229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_501274, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000591 DATDNM010000000
VERSION     DATDNM010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501274"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(191..1675)
                     /locus_tag="VI413_10010"
     CDS             complement(191..1675)
                     /locus_tag="VI413_10010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009317967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6914999.1"
                     /translation="MNDNKFNRRGFFKTAGMIAVASTFPVFTSAQNEEKIKSLLSTNG
                     KSLNLKKTKIHLDDQWDVIVVGGGPAGCAAAISAAREGAKTLLIEGMGCLGGMGTSGL
                     VPAWTPFSDGEKMVYCGIAEKVFNESKKGVPHESKDKLDWVAINPEWLKLVYDRMVSA
                     SGAKVLFFSHLASVEMKNEQEVDAIIIANKSGLTAYRAKVYVDCTGDGDLAAWAGASF
                     TKGNAKGVPMPSTHCFEIVNLNVNPTNVESFNTLYGGNKTSPIWEMVASDKYPAIKDA
                     HLCINYIGPSAVGLNAGHLFEVDSTNSQSLSDAMYHGRELANQFMAGLKEFRPSIFAN
                     SFLINTGQLMGIRESRIIEGDYKLTLKDWIARATFPDEIGRNNYFIDIHNSKEEIAKV
                     VKEKNFENNLGRPEPYKKGESHGIPYRCLTPKGLKNVLIAGRCISTEQIVQGSVRVQS
                     ACLVTGEAAGVAAAHAILNHKNDVHLVDTDRLRKRLKEEGQYIR"
     gene            complement(1687..>2229)
                     /locus_tag="VI413_10015"
     CDS             complement(1687..>2229)
                     /locus_tag="VI413_10015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6915000.1"
                     /translation="EEFKFGFIDASVSLTTLFFVLGQAANIVGIFFAIPLSKRVGKKK
                     TYLLAMIFATVFSSMFYFLNRNNIVGIMVLQFAISFCAGIIFPLIWSMYADIADYSES
                     VTGRRATGLIFSSSSMSQKFGWTIGGALTGWMLSYYGFHANTVQTETAEFGIRMAMSL
                     LPAIGAIMSAVTILFYPLND"
BASE COUNT          691 a          496 c          354 g          688 t
ORIGIN      
        1 ttcacaagta acgtaatttt agcagtctgc ccatttttat aaataccgga ttcattggtt
       61 tgcttcaaca ccaaaccttg actccacaca attatgagat tgcttagtac agcaaagaga
      121 gtgaatataa aatatctttt gtttttcatt atatcttttg tttgaataag ccaactacag
      181 ttctgcttaa tcatcgtatg tattgccctt cttcttttaa tctttttctt aaacggtctg
      241 tatcaactaa atgaacatca tttttatgat tcagaatagc atgagcagca gccacgcctg
      301 cagcttcacc tgtaaccaaa catgctgact gaactcggac actgccctga actatttgtt
      361 cagttgagat acaacgacct gcaatcaata catttttcaa tcctttgggc gtcaaacaac
      421 ggtatggaat gccatgcgat tcaccttttt tatacggttc agggcggccg aggttatttt
      481 caaaattctt ttcttttact actttcgcaa tttcttcttt tgaattatga atatcgataa
      541 aataattatt ccgcccaatc tcgtcaggaa aagtagcacg tgctatccaa tctttcaacg
      601 ttaatttata atcaccttcg ataattcttg attcacggat tcccattaat tggccggtat
      661 tgatcaggaa agaattagca aagattgaag gccgaaattc ttttaatcct gccataaatt
      721 gatttgccaa ctctctgcca tgatacatag catcagacaa actctgagaa ttggtgctgt
      781 caacctcaaa caagtgtccg gcatttaatc ctaccgcact gggtcctatg taattgatac
      841 acaaatgagc atcttttatg gccggatatt tatctgaagc aaccatttcc caaatcggac
      901 ttgttttgtt tccaccataa agtgtgttga atgattctac atttgttgga tttacattta
      961 gattaacaat ttcaaagcaa tgagtagaag gcatagggac acctttagca ttccctttgg
     1021 taaatgatgc tcctgcccat gcagcaagat caccatctcc ggtacagtca acatacactt
     1081 ttgcccgata agctgttaat cctgatttat tagcaataat gattgcatcc acttcttgct
     1141 cgttcttcat ttctaccgaa gccagatgcg aaaagaataa aacttttgca ccggatgctg
     1201 aaaccatccg atcgtaaacc aacttcaacc attcgggatt tattgccacc caatccagtt
     1261 tatctttcga ttcgtgaggc acacctttct ttgattcgtt aaatactttc tctgcaattc
     1321 cgcaataaac cattttttca ccatccgaaa atggcgtcca tgcaggaacg agccctgaag
     1381 ttcccattcc gcccagacaa cccatgcctt caatcagaag cgtttttgct ccttctcgcg
     1441 ctgctgaaat tgctgcagca cagccagcag gaccaccacc taccacaatc acatcccact
     1501 ggtcatccag atgaattttt gttttcttta agttcaaaga tttgccattt gtagataaca
     1561 aagatttaat tttttcttcg ttctgtgcag atgtaaaaac tggaaacgtc gatgccacag
     1621 ctatcatacc tgctgtttta aaaaaaccgc gcctattaaa tttattatca ttcataatat
     1681 taatattcaa tcatttaatg gataaaacaa aatagtaaca gcggacatta tagctccaat
     1741 agcgggaagt aaactcattg ccatcctgat accaaactcg gctgtttctg tttgtacggt
     1801 gttggcatga aaaccataat atgacagcat ccaacctgtt aatgcgccac caatagtcca
     1861 gccaaatttt tgtgacatag aggaagatga gaaaattaat ccagttgcac gacgacctgt
     1921 cacagattca gaataatcgg caatatcagc atacatcgac cagatcagag ggaaaatgat
     1981 gcctgcacaa aaactaattg caaactgaag caccataatt ccaacaatat tatttctgtt
     2041 taggaaataa aacatactac taaaaactgt tgcaaaaatc attgccagaa gatacgtttt
     2101 tttcttacct acacgttttg atagtggtat tgcaaagaaa ataccaacaa tgttcgctgc
     2161 ttgacctaat acaaaaaata aagttgtcaa tgacacagag gcatcaataa acccaaactt
     2221 aaattcttc
//
LOCUS       DATDNM010000592         6115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1889521, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000592 DATDNM010000000
VERSION     DATDNM010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6115
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1889521"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(222..294)
                     /locus_tag="VI413_10020"
     tRNA            complement(222..294)
                     /locus_tag="VI413_10020"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(259..261),aa:Gly,seq:tcc)
     gene            complement(359..441)
                     /locus_tag="VI413_10025"
     tRNA            complement(359..441)
                     /locus_tag="VI413_10025"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(405..407),aa:Tyr,seq:gta)
     gene            complement(486..980)
                     /gene="ribH"
                     /locus_tag="VI413_10030"
     CDS             complement(486..980)
                     /gene="ribH"
                     /locus_tag="VI413_10030"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEY6915001.1"
                     /translation="MATQYQNLSEYNAELMPDKETVVNQTYAIAVADWNPQITHTMLQ
                     GAIDTLELIGVNPENINIIHVPGTVELTYAAKQLSIFGKYDGIIVIGCVIQGDTPHFD
                     YVCQSVTAGITELNLLKDGCPVIFGVLTTNTLQQALDRAGGIHGNKGVEAATTAIKMA
                     NIIW"
     gene            complement(1084..1761)
                     /locus_tag="VI413_10035"
     CDS             complement(1084..1761)
                     /locus_tag="VI413_10035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6915002.1"
                     /translation="MSKKEEKKHDELENVQHALTSTEAFIEKYQKQILIGVAVVVLVV
                     LAVLSFRNFYLEPREIAAENEMYKAQAAFATDSFKVALEGDGKESIGFKEIVSEYGIT
                     ASGKLAAAYAGICYYKLGQYENAVKYLSQYDGDDTYFSASVIGLTGDCCVELNETSKA
                     ISYFDKAADLENTVMSPVYLKKAGLVYESLNEAEKAEKEYTTIKEKYPKSPEAADIDK
                     YLARVQK"
     gene            complement(2218..5553)
                     /gene="mfd"
                     /locus_tag="VI413_10040"
     CDS             complement(2218..5553)
                     /gene="mfd"
                     /locus_tag="VI413_10040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEY6915003.1"
                     /translation="MTLSDFQQLYAHHPQVYSLVNWAESLEQNLKISGLSGSSSALVI
                     ASLFKANPHTHVVVRDDADDAAYLYNDLKQILGTEEVFFFPSSFKKAIKLSQLDAAND
                     ILRTEVLNRLANTSTPCVVVTYPESLMQKVVSAHSMKTKMLRMSVGESLGIDFVVEML
                     TEYKFERVDFVYEPGQFSVRGSIVDIFSYANELPYRCDFFGDEVESIRVFDIETQLSK
                     EKKTEIIIVPDLQRDITSPHISFFEFIAANGWFSFTNASFVRERINLLYDDALVKANE
                     AGHKTPTLAKTQITGDEFVEYVRKFRIIEWGERSYFQSKTSIHFNTSPQPIFHKNFDL
                     IADNLKQKQNEGYVLYVLSDSVKQTDRIAAIFADRGDDIAFQPIKNTLHEGFIDHDLS
                     LLCYTDHQIFDRFHKFQLKTDKTRLGKVVMTLKELNQFQLGDYMVHVDHGVGTFGGLV
                     RTNVNGKMQEMVKLIYKDDDIIFVSIHALHRISKYKGKEGEAPRINKLGSGAWERLKE
                     RTKSKVKDIARELIKLYAKRKAEQGFQYSPDSYLQQELEASFIYEDTPDQVKATADVK
                     KDMESVLPMDRLVCGDVGFGKTEVAMRAAFKAATDGKQVAVLVPTTVLALQHYNSFKD
                     RFKDFPVTVDYLSRARSTAQSKEVLERLAKGEIDIVIGTHKLVGKTIKFKDLGLLIID
                     EEQKFGVSVKEKLKEMKVNVDTLTMTATPIPRTLQFSLMGARDLSIINTPPPNRYPVQ
                     TEIHLFDEDVIREAIQLEMNRNGQVFFVNNRIQSIYNIEATIKRLVPGCRVAVGHGQM
                     PADKLEEIIVDFIDYEYDVLVATTIIESGIDIPNANTIIINSAHNFGLSDLHQLRGRV
                     GRSNRKAFCYLLAPEMSLLTPEARRRLQALETFAELGSGFNIAMQDLDIRGAGNMLGA
                     EQSGFIADLGYETYQKILNEAVHELKDEEFAELYADERTESNSNNVFVTDCQIDSDLE
                     VLFSNDYIENVSERISLYRELDSISNESELLEFETRLEDRFGKIPPEGQSLMLVVRLR
                     WLAMRYGIEKLVLKNERMTAFLVANPQSSYYQSEPFGKLLQYMTSHPRKCQLREQNMR
                     RSVVFSEVKTVEKAFEILSEVSR"
     gene            complement(5581..6030)
                     /locus_tag="VI413_10045"
     CDS             complement(5581..6030)
                     /locus_tag="VI413_10045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005816908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HEY6915004.1"
                     /translation="MRKAIALSIENIKNGGGPFGAVIVKDGKVIATGVNKVTLSNDPT
                     AHAEVTAIRKASKKLGTYDLTGCQIYTSCEPCPMCLGAVYWAHLDKMYYGNTKIDAKN
                     IGFDDSFIYDEIELKPENRHIETTQLLPEEAIKAFEAWANTEDKVQY"
BASE COUNT         1857 a         1306 c         1020 g         1932 t
ORIGIN      
        1 taaaggctag tgccattagt gaaactatct gttgtacagc aactattact gaagttgatg
       61 ggagaagata ttgctttgag ctaaaggcaa ccgattcaag cggtgattta attggagaag
      121 ggactcacga gcgtgtagta gtaaacattg aaaagtttat gagcaaatgc aagtaacaaa
      181 aaagacacta accaaagtta gtgtcttttt ttctttttga gagcggaaga cgggactcaa
      241 acccgcgacc ctcagcttgg aaggctaatg ctctatcaac tgagctactt ccgcaattta
      301 atatgaaatt cagataacct gtcgattaaa acaaccaata tatcatctag ccatatcgtg
      361 ggcagtgaag gattcgaacc tccgaagtcg aaagacagct gagttacagt cagccccagt
      421 tggccacttt ggtaactgcc cctcttttct caaaagcagt gcaaagatag ttttttttat
      481 ttaaactacc aaataatatt tgccattttt atggctgttg tagccgcttc cacgccttta
      541 tttccatgaa ttcctccggc acgatccaac gcttgctgta aggtattggt agtgagaact
      601 ccaaaaatta cagggcaacc atccttcaat aaatttaatt cagtaattcc tgcagttacg
      661 ctttgacaaa cataatcaaa atggggagta tcaccctgaa taacgcaacc aatgacgatt
      721 attccgtcat atttcccaaa aatagacaat tgtttagccg cataagtcag ttcaactgta
      781 ccgggaacat gaataatatt tatattttca ggattaactc caattaactc caatgtatca
      841 atggctcctt gaagcattgt atgtgttatt tgtggattcc agtcagcgac agcaattgca
      901 taagtttgat ttactactgt ttctttgtcg ggcattaatt ctgcattgta ttctgataag
      961 ttttgatatt gagttgccat tttgcgtagt gtttaaaatt agttgtaaga aactataagc
     1021 tttatcaaaa aaagccactt cgtttgacgg aagcagcttt tatatattat tttatttccg
     1081 aaattacttc tgaacgcgtg ctaaatattt atcaatatca gcagcttcag ggctctttgg
     1141 atatttttct tttattgtag tatattcttt ttctgctttt tctgcttcat tcaatgattc
     1201 gtaaaccaaa cctgcttttt tcagatatac tggactcatt actgtgtttt ctaaatcagc
     1261 cgctttatca aaatagctga ttgcttttga agtttcgtta agttccacac aacagtcacc
     1321 cgtcaaacca ataacggacg cagaaaaata agtatcgtcg ccatcatatt gcgaaagata
     1381 tttaactgca ttttcatact gccctaattt gtagtagcaa ataccagcat aagcagcagc
     1441 caatttacct gaagctgtga ttccgtattc tgaaacaatt tctttaaatc cgattgattc
     1501 ttttccatca ccttcgagcg ctactttaaa cgaatctgta gcaaaagccg cctgtgcttt
     1561 atacatttca ttctcagctg ctatttcacg tggttccaaa taaaagttac ggaaagacaa
     1621 aactgctaaa acaacaagaa caaccacagc aaccccaatt aagatttgct tttggtattt
     1681 ctcaataaat gcttctgtag atgtcaatgc atgttgaaca ttttcaagtt cgtcgtgttt
     1741 tttttcctct tttttcgaca taagattatt tttattttat tgctttttgt taatacgctt
     1801 tttattcaga actgcaaaag tatatatttt ctttcagatt acgaaatttt ggtcattgtt
     1861 tttttggtcc tttttaattt atcatacaac aatattaaaa ttgacgccaa acctattatt
     1921 taacagaaat agttgtataa ataaagatct gcatcaaata aaatgcttta tctttgtatc
     1981 aagaaaaaca accgcattgt tctgagattg gaaaactcaa cgttaaaaaa ttaacgagta
     2041 gtggctggtt tttaatggcg ggctgcgcct tcgggtatcc atagtggacg gcagattaca
     2101 aagaaaactg acacctcaaa tcctatttat taggagtttt ctcaactaat ggcaatgcgg
     2161 tttttttcat gtatacacct cacccgtttg accctcaatt cactttctcc tcttcttcta
     2221 cctactcact tccgacaaaa tttcgaaggc tttttcaact gttttcacct ccgaaaacac
     2281 cactgaacgg cgcatatttt gttctcgcaa ctgacattta cgtggatgcg aagtcatata
     2341 ttgcaataat ttaccaaaag gttcggactg ataataagac gattgaggat ttgcaaccag
     2401 aaatgcagtc attcgttcgt ttttcaacac caatttttca atgccataac gcatagctaa
     2461 ccaacgtaag cgaacaacca acataagact ctgaccttct ggtggaattt ttccaaaccg
     2521 atcttccaac cttgtttcaa actccaacaa ttccgattca ttactaatac tatctaattc
     2581 acgatacaag ctaatacgct cagatacatt ttcgatataa tcatttgaga ataacacttc
     2641 caaatcagag tcaatctgac aatcggttac aaatacatta ttcgaattgc tttctgtccg
     2701 ttcatcggca tataattcgg caaattcttc atctttcaat tcatgaacag cttcattcag
     2761 gattttttga taagtttcat agcctaaatc cgcgataaat ccactttgct ccgcccccag
     2821 catatttccg gcaccacgaa tatccaaatc ctgcatcgcg atattaaatc cacttccaag
     2881 ctcggcaaat gtctccaatg cctgcaacct gcggcgggct tcgggagtaa gcaggctcat
     2941 ttcaggagcc aacaagtaac aaaatgcttt cctgttgctg cgcccaaccc ggccacgcaa
     3001 ctggtgcaag tcgctcaacc caaaattatg ggcactattg ataatgatcg tattcgcatt
     3061 aggaatatcg atacccgatt caataatagt tgttgccacc agcacatcgt attcataatc
     3121 aataaaatca acaataattt cttccagttt atcggcaggc atttgtccat gtcccacagc
     3181 aaccctgcag ccgggaacaa gacgtttaat ggtagcctca atattataaa tgctttgaat
     3241 acggttattc acaaagaaaa cctgaccatt acgattcatt tccaattgaa tggcttcacg
     3301 aatcacatcc tcgtcaaata aatgaatctc ggtttgaaca ggataacgat taggtggagg
     3361 cgtattgata atagacaaat cgcgtgctcc catcaacgaa aactgcaatg tacggggaat
     3421 tggagttgct gtcatagtaa gcgtatccac attcaccttc atttccttca acttttcttt
     3481 tactgaaaca ccgaattttt gttcttcatc aataatcaac aaacctaaat ctttaaattt
     3541 aatggttttg ccaactaatt tatgcgtgcc tatgacaata tcaatctcac ctttggccaa
     3601 tctttcaaga acttcctttg actgggcagt actccgggct cggctcaaat agtcaaccgt
     3661 aaccggaaaa tctttgaaac gatctttaaa tgaattataa tgctggagag ctaaaacagt
     3721 cgttgggacc aaaacagcca cttgctttcc atctgtagct gctttaaatg ccgcacgcat
     3781 ggccacttca gttttcccaa agccaacatc accacacacc aggcgatcca ttggcaatac
     3841 cgattccata tctttcttta catcggctgt agcttttacc tggtcgggag tatcttcgta
     3901 aataaacgag gcttcaagtt cctgctgcaa gtagctgtcc ggcgaatact gaaaaccttg
     3961 ttctgcctta cgttttgcat agagcttaat caactctctt gcaatatctt taaccttcga
     4021 cttggtacgt tcttttaagc gctcccatgc accagaacct aacttattta tacgtggagc
     4081 ttcaccttct ttgcctttat atttggaaat acgatgaagt gcatgaatac tgacaaaaat
     4141 aatatcatca tctttgtaaa taagctttac catttcctgc attttaccat tcacattggt
     4201 gcgaaccaaa cctccaaatg ttcctacccc atgatcgaca tgcaccatat aatcgcccaa
     4261 ttggaactga ttcaactctt tgagcgtcat caccacttta cctaagcggg ttttatcggt
     4321 tttgagttgg aacttatgga aacgatcgaa aatctgatga tcggtatagc aaagcaagga
     4381 caaatcatga tcgataaatc cttcgtgtag tgtatttttg attggctgaa acgcgatatc
     4441 atcaccacgg tctgcaaaaa ttgcggcaat acgatccgtt tgtttcacgc tgtcactcag
     4501 cacataaagc acataacctt cattctgttt ttgtttcagg ttatcggcta tcaaatcaaa
     4561 gttcttatga aaaataggct gtggtgatgt attgaagtga atagaagttt tagattgaaa
     4621 ataagacctt tccccccact ctattattcg gaatttccga acatactcta caaattcatc
     4681 gccagtaatc tgagtctttg ccagtgttgg tgttttatgc cctgcttcat tagcttttac
     4741 gagcgcatca tcataaagca gattgattct ttcacgcaca aaactagcat ttgtaaagct
     4801 aaaccagcca ttcgcagcaa taaattcaaa aaatgagatg tgcggtgaag ttatatcacg
     4861 ctgcaaatca ggcacaataa ttatttccgt ttttttctct ttcgataatt gagtttcaat
     4921 atcaaaaaca cgaattgact ctacttcatc cccaaaaaag tcacaacgat aaggtaattc
     4981 gttagcataa gagaaaatat cgacaatact gccacgtaca gaaaactgtc cgggttcata
     5041 aacaaagtca acacgttcaa acttatattc ggtcagcatt tccactacga aatcaatccc
     5101 caggctttct cctacagaca ttcgcagcat tttggttttc atactatgtg ctgaaactac
     5161 tttctgcatc aacgattcag ggtaagtaac caccacacag ggagtagaag tattagccag
     5221 acgattcagg acttcagtcc gtagaatatc attagcagca tcgagttgag ataatttgat
     5281 tgctttttta aatgaagaag gaaaaaagaa tacttcttca gtccccagta tttgttttaa
     5341 atcgttgtac aaataagccg catcatcagc atcatctcga acaactacat gtgtgtgagg
     5401 attggcttta aacagagaag caatgaccag agccgatgaa gatccgctca aaccggaaat
     5461 ttttaaattc tgttcgagtg attctgccca attcaccaat gaataaactt gtggatgatg
     5521 ggcatataat tgttggaagt cggaaagagt caagattgtt tgattaagca tttttattga
     5581 ttaatactgc accttatctt ctgtatttgc ccatgcttca aaagccttaa ttgcctcttc
     5641 aggcaataat tgggtagttt caatatggcg attttcaggc ttgagttcaa tttcatcata
     5701 aatgaatgaa tcatcaaaac caatattttt agcgtcgatt tttgtgttcc cataatacat
     5761 tttatccaaa tgcgcccaat aaacagctcc aaggcacata gggcatggtt cgcacgaagt
     5821 ataaatctgg catccagtca aatcataagt tcccaatttt ttagacgctt tgcgaatggc
     5881 tgtcacttct gcatgtgcgg tagggtcatt gctcaaagtc accttattta cacctgtagc
     5941 aatgacttta ccatctttta ctataacagc tccaaaaggg cctcctccat tttttatatt
     6001 ttcaatagac aaagctatag ctttgcgcat aaatttctta ttataatcca tttcggaatc
     6061 tttattttta taaaacatag caaagatagt gttttttgaa taactatcga gaacc
//
LOCUS       DATDNM010000593         2203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1568663, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000593 DATDNM010000000
VERSION     DATDNM010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1568663"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(229..669)
                     /locus_tag="VI413_10050"
     CDS             complement(229..669)
                     /locus_tag="VI413_10050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6915005.1"
                     /translation="MGRVSTYLNFVRETEAAFNFYKIVFGTEFNGEIMRFAGVPPQEG
                     MPELPEADKNLVMHMELPILGGHILMGSDAPESMPFKLTFGNNSYIMLEPDTKEETRK
                     LFNLLSKDGKVEQQLEEMFWGGLYGSLTDKFGVKWMFNCSEEAK"
     gene            884..1804
                     /locus_tag="VI413_10055"
     CDS             884..1804
                     /locus_tag="VI413_10055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005846048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase family protein"
                     /protein_id="HEY6915006.1"
                     /translation="MNLNIKNETGTLKVVVLGQPGSIGKVPSIEKTFDAKSYESVLNG
                     VYPTEEAICKEMNAFEKVLLKYNVQVFRPLTLENCNQVFARDVAFVIGDKIINCNIIP
                     DREDEKEAYEVIYDQIAYNKIYNLPDKAHVEGGDVVLLNDMVFVGVYTKPDYSQLKTA
                     RTNLYAFNFLKEIIPEKTFVPIELKKHDTDPHQCILHLDCAFMPVGNGKVIIYKDGFS
                     NEKDYLMIVEIFGYQNIFEISREEMYYMNANIFSISPSVVVSEKRFMRLNDHLENYWN
                     IKVERVPYFEISKMGGLLRCSTLPLVRENQ"
     gene            1943..>2203
                     /locus_tag="VI413_10060"
     CDS             1943..>2203
                     /locus_tag="VI413_10060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008668425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase-related protein"
                     /protein_id="HEY6915007.1"
                     /translation="MIEPVAFGFNQQTAVNNYFQQADSLKKSDIQKFALSEFTDMVEI
                     LRANGINVLVVKDTLQPHTPDSIFPNNWISFHEGGQAVLYPMF"
BASE COUNT          719 a          350 c          403 g          731 t
ORIGIN      
        1 aaatagtagt taggttagta ttcagaaagg ttgtaagcga attgcaaata taattaattt
       61 tcacatgtaa taatatgttt tattacaaaa aatgatgatt aagtaacgaa atataagaat
      121 gttagataaa aatgataaaa taaatgtata ataattaagg ttgagtttgt cgtaaaaaat
      181 aagggcttca ctcacgcgaa acccttacct tttttatttt tgcagccttt attttgcttc
      241 ttcactacaa ttaaacatcc attttacacc gaatttatcg gttaaactgc cgtacaaacc
      301 tccccaaaac atttcttcca attgttgttc tactttacca tctttcgaca gcagattgaa
      361 gagttttcgt gtttcttctt ttgtatccgg ttcaagcatt atatagctgt tgtttccaaa
      421 agtcaatttg aatggcatag attcaggagc atcacttccc attaatatat gtccgccaag
      481 tatcggaagt tccatatgca taaccagatt tttatcggct tccggcaatt cgggcatacc
      541 ttcctgtgga ggtacacctg caaatcgcat tatttcacca ttaaattcag taccaaaaac
      601 tattttgtaa aaattaaatg ccgcttcagt ttctctgaca aagtttagat atgtgcttac
      661 tcgtcccatt ttgtttgatt tttttgattg tgattaatag agttgattga taaggctgaa
      721 tcatcgttga gattttgatt cagtcatagt tcaaaataaa cgttgtaaat taaaaatagt
      781 tcgctgccag caagttgaat taaatattta tacacttatc caacattttt cattgtttca
      841 tgttttaaaa tgaagaggcg taataatctg gcaacaccga aatatgaacc tgaatataaa
      901 aaatgaaaca ggcactttga aagttgtcgt tttgggacaa cccggatcaa ttggaaaagt
      961 gccgtccatc gaaaagactt tcgatgcgaa atcttatgaa tcggttctga atggtgttta
     1021 tccgaccgaa gaggctatat gcaaagaaat gaatgcattc gaaaaggttc tattaaaata
     1081 taacgtgcag gttttccgtc cgctgacact tgaaaattgt aatcaggttt ttgcacgcga
     1141 tgtggctttt gtcattggcg ataagataat caattgcaat ataattcctg atcgcgaaga
     1201 tgaaaaagag gcttatgaag ttatttacga tcagattgcc tacaataaaa tttataattt
     1261 acccgataaa gcccatgtag aaggtggtga cgtagtgttg ttgaacgata tggttttcgt
     1321 gggagtatat acaaaacctg attattcgca attgaaaacg gccagaacta atttatatgc
     1381 atttaacttt ttgaaagaaa ttattccgga aaaaacattt gttccaattg aattaaagaa
     1441 gcacgatact gatccgcacc agtgcatact gcatttggat tgtgcattta tgcccgttgg
     1501 aaacggtaag gtgataatat ataaagatgg attttcgaat gagaaagatt atcttatgat
     1561 agtggaaata tttggttatc agaatatttt tgaaatttca agggaagaaa tgtattacat
     1621 gaatgctaat atattctcga tttcacctag tgtagttgtt tccgaaaaac gtttcatgcg
     1681 gctaaatgat catttagaaa attattggaa tatcaaggtt gaacgtgttc cttatttcga
     1741 aatttcaaag atgggcggat tgttgcgttg ctctaccttg ccgttggtga gggaaaatca
     1801 atagtctcgg caagagatta aattattgtt ttattggcgt taacaaataa taaattagaa
     1861 aatgaagacg aacattcaag atatgatgcc tgaaaagtct cctttacagg ctgacagatc
     1921 tcaaactaca aacaccattc tgatgataga gcccgtggca tttgggttca atcaacaaac
     1981 tgctgtgaat aattattttc aacaagcaga ctctctgaaa aaatctgata ttcagaaatt
     2041 tgctctttcg gaattcactg atatggttga aattctgcgt gcgaatggca ttaatgtatt
     2101 agttgttaaa gatactttgc agccacatac accggattcc atttttccta ataactggat
     2161 ttcttttcac gaaggaggac aagcagtttt gtatccaatg ttt
//
LOCUS       DATDNM010000594         2110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1463165, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000594 DATDNM010000000
VERSION     DATDNM010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1463165"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..394
                     /locus_tag="VI413_10065"
     CDS             41..394
                     /locus_tag="VI413_10065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915008.1"
                     /translation="MIKFKIFILIFILIGLTSCKRKIKQDCKDFTIQDYSITIRFSSM
                     WDCGLFKKIILNNKKLEDPRVKDRFKDYKLYTINYKGNCKNANKSDTLIVDLTKLQSD
                     SIFDLANLFIQDFKL"
     gene            complement(407..1876)
                     /locus_tag="VI413_10070"
     CDS             complement(407..1876)
                     /locus_tag="VI413_10070"
                     /inference="COORDINATES: protein motif:HMM:NF013752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEY6915009.1"
                     /translation="MNQTKHPQWALDQKRPGTELRLIRGIYYLYEYKTVYDKQRKGPR
                     KITGKILGRVTQEGFIPSGKRQMEQALSRTVNQSPGCREYGASMLVAQTFNEYTVALK
                     KFFPEHWRHLLAIAYCRFVYRCPLKLIPFRVDQSYLSIWLKTIRFNDKTASSVLNTVG
                     AMHEQMLGYMKSFIARDEYLLMDLTHVFSKSDMITLSHKGYNNQLNFDPQFNLMYLYS
                     SKSRMPVYYKVLPGNIREVRAFKNCILEAGLNDAVIVADKGFYSKKNIDLLQKEQLRF
                     ILPLRRDNTIIDYSLLNDNSFKAGDCYFEHEKRMIWYRKYTYGDLSLFIYLDDSLKLK
                     EEKDYLRRIDTHPENYSLTEYHKRKDTFGTIVLLTDFQRKPAVEVYETYKSRMAIETL
                     FDSMKNVLEADHTYMQDEQTLHGWMFVNHITLQWYQHLYIELKKKNLLSKYSVNDYIQ
                     LLTDLKKIKINDQWHFNEITSKTQKMIEKLDLAIPDYNT"
BASE COUNT          634 a          391 c          407 g          678 t
ORIGIN      
        1 cccgcagggc gttgtgtgca acaaataaac acgtacaatt atgataaagt ttaaaatctt
       61 tatactgatt tttatcttaa ttggattgac atcatgtaaa agaaaaataa aacaagattg
      121 taaggatttt acaattcaag attattctat tactattcgt ttttcttcaa tgtgggattg
      181 tggtctgttt aagaagatta ttttaaataa taaaaaactc gaagatccac gggtaaaaga
      241 tagatttaag gattacaaat tatatacaat taattataag ggaaattgca aaaatgctaa
      301 caaatcggac accttgattg ttgatttaac aaaattacaa tcggacagta tttttgactt
      361 agctaattta tttattcaag actttaaact ctaactccga acaaatttac gtattataat
      421 ctggtatggc aaggtccagt ttttctatca ttttctgagt tttagatgtg atttcattaa
      481 agtgccactg atcattgatt ttgatttttt tcagatcggt aagcaactga atatagtcat
      541 tgacggagta cttgcttaat aggtttttct ttttcagctc tatatacaag tgctggtacc
      601 attgcagggt aatgtgattt acaaacatcc agccgtggag ggtttgctca tcctgcatat
      661 aggtgtgatc cgcttccaga acatttttca tgctgtcgaa taaggtctca atggccattc
      721 tggatttgta ggtttcataa acctcgacgg ctggtttgcg ttgaaaatcc gtcagcagga
      781 caatggttcc aaaagtatct tttcgtttat gatattctgt cagggaatag ttttccggat
      841 gggtatcaat tcgtcgaagg taatcctttt cctcttttag ttttagggaa tcatcaagat
      901 agatgaataa tgacaaatct ccgtaggtgt atttgcgata ccagatcatg cgcttttcat
      961 gttcaaaata gcaatctccc gctttgaagg aattatcatt caacagggaa taatcaatga
     1021 tggtgttgtc gcgacgaagc ggcaggatga accgcaactg ttctttttga agtaggtcga
     1081 tgttcttttt tgaatagaat cctttgtctg ccacaattac tgcatcgtta agtccggctt
     1141 caagaatgca atttttaaag gccctgactt cacggatatt cccgggtaaa accttataat
     1201 acacgggcat cctggacttg gaggaataca ggtacatcag gttgaactgg ggatcaaaat
     1261 tcaattggtt attgtaccct ttatgggaaa gagtaatcat atctgacttt gaaaacacat
     1321 gggtaagatc catcagcaaa tactcatctc tggcaataaa tgacttcata tatcccagca
     1381 tctgttcatg catggcgcca acagtattca gcacagagga agctgtctta tcgttaaatc
     1441 tgatcgtttt cagccagatt gaaagataac tctgatccac ccggaaagga atgagtttca
     1501 acggacaccg gtatacaaaa cggcaatagg cgatggccag taagtgtctc cagtgctcgg
     1561 gaaagaactt tttcaatgca accgtatatt cgttgaatgt ttgtgccaca agcattgatg
     1621 caccatattc tctgcaacct ggactctgat tgactgtacg tgacaaggcc tgctccatct
     1681 gacgtttgcc ggagggaata aatccctcct gcgtaaccct gcctaaaatc ttgccggtta
     1741 tcttacgcgg cccttttcgc tgtttgtcat acacggtttt gtactcatac agataataaa
     1801 ttccgcggat cagccgcagt tctgtgcctg gtctcttttg atccagtgcc cattgtggat
     1861 gttttgtctg gttcatataa tacgttatca cgtattacaa aataacaaca taaaaacccc
     1921 tctgtcaagg ggttcatgca aaagttatta actaatacgt gttaatcttc ggagttagag
     1981 gttaacatgc cccattaaaa agtaatgaat aacatatcga aaatagcagt tattagttta
     2041 tttgcactaa catccattat ggctcattgc caaacggatt cagtaaaatc aacttcaata
     2101 gaagtattta
//
LOCUS       DATDNM010000595         3882 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_821555, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000595 DATDNM010000000
VERSION     DATDNM010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3882
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_821555"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..588
                     /locus_tag="VI413_10075"
     CDS             <1..588
                     /locus_tag="VI413_10075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005856371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase domain-containing
                     protein"
                     /protein_id="HEY6915010.1"
                     /translation="CLAALPGQTIHDIKEVQSHPIALMHCADFLGTLPGVKVVEHEDT
                     ALAARDIAQKNMLGNAAICSERAAEIYGLNILAKGIETNKRNFTRFLIFANEWVVEEI
                     QKDDSINKASIVFTLPHTEGSLSKVLSVFSFYDINLTKIQSLPIIGREWEYQFYVDFK
                     FEDLERYKQSLTAIKPLINELKTLGEYPEGITPIE"
     gene            731..1954
                     /locus_tag="VI413_10080"
     CDS             731..1954
                     /locus_tag="VI413_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005868247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6915011.1"
                     /translation="MSNENIKNEATSNSPLGVGGRIIKPAERLNSISEYYFSTKLKEV
                     AEMNAKGMNVISLGIGSPDLPPSAETVEALCKSAAEATAHGYMPYVGIPELRKAIAAW
                     YEKWFAVELNPATEIQPLIGSKEGILHISLAFLNPGDGVLVPNPGYPTYSSVSNLVQA
                     KVLTYDLDENNNWQPDFDALEQMDLSNVKLMWVNYPNMPTGASATPELFEKLVAFGKK
                     HGIVICNDNPYSFILNENRLSILQVEGAKDICIELNSMSKSHNMPGWRMGMLASNAEF
                     VQWVLKVKSNIDSGQFKPMQVAAIAALNNSDEWHREMNIKLYRNRRQLAEEILKTLGC
                     TFDETQVGMFLWGKIPEKYSDSGELADKVLYDAKVFITPGFIFGDKGNRYIRLSLCAN
                     DKMLGEALERVKLIC"
     gene            2100..3158
                     /locus_tag="VI413_10085"
     CDS             2100..3158
                     /locus_tag="VI413_10085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-deoxy-7-phosphoheptulonate
                     synthase/chorismate mutase type II"
                     /protein_id="HEY6915012.1"
                     /translation="MELESILLPGVDAKRPLVIAGPCSAETEEQVMESARRLHARGIK
                     IFRAGIWKPRTKPGGFEGIGVEGLPWLKRVQKELGMYTAVEVATAAHVRECLAHGVDI
                     LWVGARTSANPFAVQEIADALEGVDIPVLVKNPVNPDLDLWIGAIERIYNAGIRRIGA
                     IHRGFSTYDKKIYRNLPQWHIPIELKRQIPNLPLICDPSHIGGKRELIAPLCQQAMDL
                     NYDGLIIESHCNPDKAWSDAAQQVTPEVLDLILSTLVIRDMTQSTENLTALRRQIDEL
                     DNSLLELLARRMRVSEEIGMYKKEHNMPILQSQRYDEILKNRITQAEQMGMDGEFMKT
                     VLVAIHEESVRHQQEIMK"
     gene            complement(3267..3698)
                     /locus_tag="VI413_10090"
     CDS             complement(3267..3698)
                     /locus_tag="VI413_10090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915013.1"
                     /translation="MKKYGMLVMAFAFSLAVSAQDQMPPQGGQRGQGQEMRQGNRPQM
                     TPQMRAERLAKQLDLTVDQTAQVKALYEKQDAQRQKKQGEVQKTREEMRAQFEADRKT
                     QDEELTKIIGPEKVKKLQDMRAERMKQRSENGQGQQQNEVK"
BASE COUNT         1119 a          731 c          888 g         1144 t
ORIGIN      
        1 tgcctggctg cattgcccgg acaaacgata cacgatatta aagaagtgca gtcgcacccg
       61 atagctttga tgcactgcgc tgattttctt ggaactttgc ccggcgtaaa agtggtggag
      121 catgaagata ctgcccttgc agcccgtgat attgctcaaa aaaacatgtt gggaaatgcg
      181 gcaatctgta gcgagcgtgc tgctgaaata tacggattga atatactggc taaagggatt
      241 gaaaccaata aacgcaattt tacccgtttt ctgatttttg ccaatgagtg ggtggtggaa
      301 gagattcaga aagatgacag tattaacaaa gcatcaatcg tctttacgct gccacacacc
      361 gaaggtagcc tttcgaaagt actgtcggtt ttctcatttt atgacataaa ccttactaag
      421 atacagtccc tgccaattat agggcgtgaa tgggaatatc agttttatgt cgatttcaag
      481 tttgaagatc tggaacgcta taaacaatca ttgacagcta ttaagccatt aattaatgag
      541 ttaaaaacat tgggtgaata tccggagggg ataacaccaa ttgaataggt ccctaacccc
      601 taaagggaaa tcagattggt tttgataaca gtaaacaaat ggaataaccc ctaacccctg
      661 aaggggaacc ggattagttt cgataactat aaacaaattt caggacgata caaaatttaa
      721 tgtcgaaaac atgagcaatg aaaatataaa aaatgaagct acctcaaact ctcctttagg
      781 ggttgggggt cgtattatca aaccagctga aagattaaat tctatttcgg aatactattt
      841 ttccaccaag ctgaaagagg tggcggaaat gaatgccaaa ggtatgaatg tgatcagttt
      901 ggggattgga agccccgatt tgcctccttc ggcagaaact gttgaagcgc tttgcaaatc
      961 ggccgctgag gctactgccc atggttatat gccttatgtg ggaataccgg agttgcgtaa
     1021 agcgattgct gcgtggtacg aaaaatggtt tgccgtggag ttgaatccag ccaccgaaat
     1081 ccagccgttg attggttcaa aagaaggtat tttgcatatt tcacttgcat tcctgaatcc
     1141 gggcgatggc gtgttggtgc caaatccggg ttatccgact tattcgtcgg taagtaatct
     1201 ggtgcaggct aaggtgctga cttacgattt ggatgaaaat aataactggc aaccggattt
     1261 cgatgcgctt gaacaaatgg atttgagtaa cgttaaacta atgtgggtaa attatccgaa
     1321 tatgcctacc ggtgcaagtg ctactcccga actgtttgaa aagctggtgg ctttcggaaa
     1381 aaaacacggt atcgttattt gtaacgataa tccttatagc tttattttga acgaaaaccg
     1441 actgagtatc cttcaggtag aaggagctaa agatatttgt attgagttga attcgatgag
     1501 caaatcgcac aatatgccgg gttggcgtat gggtatgctg gcttcgaatg ccgaatttgt
     1561 gcaatgggtg ttgaaagtta agagtaatat cgacagtggg caattcaagc ctatgcaggt
     1621 ggctgccatt gcagctttga ataactccga tgaatggcac cgcgaaatga atatcaaatt
     1681 gtatagaaac cgtcgtcagt tagcagaaga aattctgaaa acactcggtt gtacttttga
     1741 tgaaacacag gtgggaatgt tcctttgggg aaaaattcct gaaaaatatt ccgatagtgg
     1801 agaactggcc gataaagtgc tttacgatgc gaaggtgttt atcactcccg gatttatttt
     1861 cggagataag ggtaaccgtt atattcgcct ttcactttgt gccaacgata agatgcttgg
     1921 tgaggcgttg gagcgggtaa agttaatatg ttgatgtgat aatttgctga ttttcagatg
     1981 tgataataag caaaagtact gacctgataa taaataaacg aatataaaca aaaataacag
     2041 aaatagagca agctgttttg ttgcttacag ctaaacaatt gccgctaatt ttttagatta
     2101 tggaactaga atcaatttta ctccccggag ttgacgcaaa gcgtccactc gttatagccg
     2161 gaccatgtag tgcagaaaca gaagaacaag taatggagtc ggcacgcaga ctacatgcac
     2221 gtggtatcaa aattttccgt gccggaatat ggaaaccaag aaccaaaccc ggaggtttcg
     2281 aaggaatagg tgtagagggg ttgccttggc ttaaacgtgt tcagaaagaa ttgggaatgt
     2341 acacggctgt agaagtagct accgctgctc atgtccgtga atgtttggct catggggttg
     2401 atatcctttg ggttggtgca cgtacatcgg caaatccgtt tgctgtgcag gaaatcgccg
     2461 atgcattgga aggtgtggat ataccggtat tggtaaaaaa cccggtaaac cctgatctgg
     2521 atttgtggat tggtgctatc gaacgcattt acaatgcggg tattcgtcgt attggcgcca
     2581 ttcaccgcgg ttttagtact tacgataaaa agatttaccg caatcttccg caatggcata
     2641 ttccaattga attgaaacgt caaattccta atttgccact tatttgcgac ccaagtcaca
     2701 ttggtggaaa gcgcgaactt attgccccgc tttgccagca agctatggac ctgaattacg
     2761 atggattaat tatcgaatcg cactgtaatc cggataaagc atggagtgat gctgcacaac
     2821 aagttactcc tgaagtgctg gatttgatcc tgagcacact ggtaatccgt gatatgaccc
     2881 agtcgactga aaacctgact gctttgcgcc gccagattga cgaactggat aacagtttgc
     2941 tcgaattgct tgcgcgtcgt atgcgtgtgt cagaagaaat cggaatgtac aaaaaagagc
     3001 acaacatgcc tattttacaa tcgcaacgtt acgacgagat tttgaagaac cgtattacac
     3061 aagccgagca aatgggtatg gatggtgaat ttatgaaaac tgtcttggtt gccattcacg
     3121 aggaatcggt acgtcaccaa caggaaatta tgaaatagat ccttagttca tagtttatag
     3181 caagttatgt ttaatacaaa cagacttaaa gaaaaactcc cgcaaatcaa ttgatttgcg
     3241 ggagttttcg tttgtaaaga aattgtttac tttacttcat tttgttgctg tccctgaccg
     3301 ttttcgcttc tttgtttcat gcgttcagcg cgcatgtcct gtagtttttt tactttttca
     3361 ggtccaatga ttttggtaag ttcttcatcc tgtgttttgc gatcagcttc gaattgagct
     3421 ctcatttctt cccgtgtttt ttgaacttca ccttgttttt tctgacgttg ggcatcttgt
     3481 ttttcgtaca aagccttaac ctgcgctgtt tgatcgactg tcagatccaa ctgtttagcc
     3541 agacgttctg cacgcatttg tggagtcatt tgcggtctgt taccctgacg catttcttgt
     3601 ccctgacctc tttggcctcc ctgaggtggc atttgatcct gagcggatac ggctaagcta
     3661 aaagcaaaag ccattactag cattccatac tttttcatac gtaaataatt gttttttaat
     3721 tgtcgtatgg aattcgtccc gctaaaaccg gactcgtttc atattccaat ttgttgttga
     3781 taatagattc aaaatatgtt tcttagacta aataccttgt tcatagttta atctggctaa
     3841 gttattttat tgataagctt agtttaatag aaaaatgata tt
//
LOCUS       DATDNM010000596         3400 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1889606, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000596 DATDNM010000000
VERSION     DATDNM010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1889606"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1186)
                     /locus_tag="VI413_10095"
     CDS             complement(<1..1186)
                     /locus_tag="VI413_10095"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009276081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY6915014.1"
                     /translation="MKQINCFLACNNITETLKTVEQIKQSSLVQAIYLLVKNSANIQI
                     NGCTTIEIDSLQSSETIRKIADKSDAAYSLIYTKNSTLELGQFALERFYRIAEDTQAG
                     LVYSDYYEIKDGLRSNHPVIDYQEGSLRDDFNFGSVLFYNAANLKKAVTETTENYQFA
                     GLYNLRLKVSQQAELVHMNEYLYAEVETDTRKSGEKQFDYVDPKNRAVQIEMEAACTD
                     HLKKIGGYLAPQFKKIEFNESNFPVEASVIIPIRNRVKTVEDAIKSVLMQKTSFEFNL
                     IIVDNFSTDGTSEMIQKFAQQDNRVIHITPNRNDLGIGGCWNEGVHSAQCGKFAVQLD
                     SDDVYQTENTLQIIVDAFYEQNCAMVIGSYTMTNFAMETIAPGLIDHKEWTPDNGRNN
                     ALR"
     gene            1350..2186
                     /locus_tag="VI413_10100"
     CDS             1350..2186
                     /locus_tag="VI413_10100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007660616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HEY6915015.1"
                     /translation="MILIADSGSTKTHWCLVQGGVVVSEIFTHGINPFYQTDLEITAL
                     LDTQLTPKLPSTEIKKIYFYGAGCSFPEKKMMVSLALINFFSDAIIEIQSDLLGAARS
                     LFQHEKGIACIMGTGSNSCYYDGNEITQNVSPLGFILGDEGSGAVLGKLLVADCLKNQ
                     LPEWLSEKLLDEYEVTPAIILENVYKRPFPNRFLAKFTPFLLEHIEEPAIFNLVYDSF
                     DAFFVRNVMQYPLEDVEVGFVGSIAHYFRDTLEIVASERGIEVAEVVQNPMKGLVKFH
                     TN"
     gene            2279..3160
                     /gene="murQ"
                     /locus_tag="VI413_10105"
     CDS             2279..3160
                     /gene="murQ"
                     /locus_tag="VI413_10105"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014223531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HEY6915016.1"
                     /translation="MSNEANSIPHQGLGVNSHSVGKGFFRITEQHSLHNDLDQKSVSQ
                     LLVEMNEEDQKVALVVQKTIPQIEKLVEKIVERMNRGGRIFYIGAGTSGRLGVLDASE
                     IPSTFGMPSGLVIGLIAGGEPALRNPVENAEDDTEKAWHELQQHNINKNDTVIGIAAS
                     GTTPYVVGALQNARANEILTASITCNPDSPMAHEADIRIEVIVGPEFVTGSTRLKSGT
                     AQKMVLNMITTTTMIKLGRVKGNKMVNMQLTNAKLIDRGTRMIMDEFGLEYEQAKNAL
                     LVHGSVKKAIEAISKPI"
     gene            complement(3228..>3400)
                     /locus_tag="VI413_10110"
     CDS             complement(3228..>3400)
                     /locus_tag="VI413_10110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007214305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6915017.1"
                     /translation="AKWIAAFNPLKHFMEVMRSVYLKGSNPLQLTKQLLALISFAVFF
                     NSWAVLSYRKKN"
BASE COUNT          941 a          644 c          808 g         1007 t
ORIGIN      
        1 tacggagagc attattgcgg ccgttatcgg gagtccattc tttgtggtca atcagtccgg
       61 gcgcaatggt ttccatggca aagttggtca tggtgtacga gccaatcacc atggcgcagt
      121 tttgttcgta gaaagcatca acgataattt gcaatgtgtt ttcggtttgg tacacgtcgt
      181 cgctgtccag ctgcactgca aattttccgc attgtgccga atgcacgcct tcattccagc
      241 aaccgccaat accgaggtcg ttgcggtttg gagtaatatg aattactcgg ttgtcttgtt
      301 gggcgaattt ttgaatcatt tccgaagttc cgtctgtaga gaagttgtct acaattatca
      361 ggttaaattc aaaagatgtt ttctgcatta atacagactt tatggcgtct tccaccgttt
      421 tcacgcggtt gcggataggg ataattaccg aagcttccac cggaaaattg ctttcgttga
      481 attcaatctt tttaaattga ggagccagat agccgccaat tttcttcagg tggtctgtgc
      541 aggcagcttc catttcaatt tgtaccgcac ggtttttcgg gtcaacataa tcgaattgtt
      601 tttcaccact ttttcgggtg tcggtttcta cttcggcata caaatattcg ttcatgtgaa
      661 ccagttcggc ctgctgcgaa actttcaggc gcaggttgta aagtcccgca aattggtagt
      721 tttcggtggt ttcggtaacg gctttcttaa ggttagcagc attgtaaaac agcactgaac
      781 cgaagttgaa atcgtcgcgc agcgagcctt cctgataatc aattaccgga tgattggaac
      841 ggagtccgtc tttaatttcg taataatcag agtacaccag tccggcctgc gtgtcttcgg
      901 caatgcggta gaaacgttcc agtgcaaatt gtccgagttc gagcgtgctg tttttggtat
      961 aaatcagcga ataagccgca tcggatttat cggcaatttt ccgtatagtt tccgaacttt
     1021 gcagggaatc gatttcaatg gttgtgcaac cgttgatttg tatgttagct gagtttttta
     1081 caaggaggta aatggcctga acgagtgaag attgtttgat ttgctctacg gttttgagcg
     1141 tttcggtaat gttgttgcaa gctaagaagc aattgatttg tttcatgtgg attggatagt
     1201 tgttttcaga taacaaaaat acgactaaat ttttaaataa acacaaagac atgagggcac
     1261 aaatgaatat tcgtttcttc gcgtatttgt gttgaaaaaa gctaaaataa attatatctt
     1321 tgtgttcaaa tgtgacttaa ataaaagata tgatattaat agccgatagc ggatcgacca
     1381 agacgcactg gtgtttggtg cagggtggag tagtggtgag tgagattttt acccacggaa
     1441 ttaatccgtt ttaccaaact gacctcgaaa ttacggcctt actcgatacg caactgactc
     1501 ccaaacttcc ctcaacggaa ataaaaaaga tctattttta tggcgccggt tgttcatttc
     1561 cggagaaaaa aatgatggtg agccttgcgc tgatcaactt tttcagtgat gcgataatag
     1621 agattcaaag cgatttgctt ggagctgcac gttcgttgtt tcagcacgaa aaaggaatag
     1681 cgtgcattat gggaacaggt tccaattctt gctattatga tggcaatgaa attacacaga
     1741 atgtttcgcc acttggtttt attttgggtg atgagggtag tggtgctgtg cttggaaaat
     1801 tgttggttgc cgattgcctg aaaaaccaac tccctgaatg gctgagcgaa aaactccttg
     1861 acgaatatga ggtgactccg gccatcattc tggaaaacgt atataaaagg ccgttcccta
     1921 accgtttcct ggctaaattc actccatttt tgctggaaca tatcgaagaa ccagccattt
     1981 ttaatctggt ttacgattcg ttcgacgcat tttttgtgcg caatgtgatg caatatccgt
     2041 tggaagatgt ggaagttgga tttgttggtt cgattgcgca ttatttcagg gacacactgg
     2101 aaattgtggc ctcagaaagg ggaattgaag ttgcagaggt tgtgcagaat ccgatgaaag
     2161 ggttggtgaa gtttcatact aattgaccga cccccaaccc ctgaggggga gtaagaaata
     2221 ttagtattga ttattataac aagatatttt aaagcatagg aatgaataaa aaaataatat
     2281 gtcaaacgaa gctaattcaa ttccccatca ggggttaggg gtaaattccc attcagtagg
     2341 caagggtttt tttcgtataa cagagcaaca ttcccttcat aatgatctcg atcaaaaatc
     2401 agttagccaa ctgcttgttg aaatgaacga agaggaccag aaagtggcgt tggttgttca
     2461 gaaaactatt cctcaaatag agaagttggt ggaaaaaatt gtggagcgaa tgaatcgtgg
     2521 tgggcgaatt ttctatattg gtgcgggtac cagtggccgg ttgggggtgt tggatgcttc
     2581 tgaaattccg tccacttttg ggatgccttc gggtttggta attggcttga ttgccggcgg
     2641 tgaacctgct ttgcgtaacc cggttgaaaa tgccgaagac gatactgaaa aagcatggca
     2701 tgagcttcag cagcataata tcaataagaa cgatacagta attggaattg cagcttcagg
     2761 aactacgcct tacgtggttg gagccttgca aaacgcccga gccaatgaaa ttctgacggc
     2821 ttcaatcact tgtaaccccg attcgccaat ggctcatgaa gcggatattc ggatcgaagt
     2881 gattgttgga cctgaatttg taaccgggag cacgcgactg aaatcaggta ctgcgcaaaa
     2941 aatggtgctg aatatgatta ccaccacaac catgattaaa cttggccggg taaaaggcaa
     3001 caaaatggtg aatatgcagc ttaccaatgc caagctgatt gaccgtggca ctcgcatgat
     3061 catggacgaa tttggcctgg aatatgagca ggccaaaaac gctttgcttg ttcatggttc
     3121 ggtgaaaaaa gcaatagaag caatttcaaa acctatttaa acaataatcc cgcaagtcaa
     3181 catatagttc gttgctttgc gggattggta taaattgggt agatgaacta atttttcttc
     3241 cggtaactca atactgccca gctgttaaag aatactgcaa aactgattaa ggcaagtaac
     3301 tgttttgtga gctgcagcgg attgcttcct ttcagataaa ccgaccgcat tacttccatg
     3361 aaatgtttca gcggattaaa tgctgcaatc cattttgccc
//
LOCUS       DATDNM010000597        11696 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_73605, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000597 DATDNM010000000
VERSION     DATDNM010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 11696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11696
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73605"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..545
                     /locus_tag="VI413_10115"
     CDS             156..545
                     /locus_tag="VI413_10115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915018.1"
                     /translation="MHTFEMQGDIHVDMLAPKGKIETFRFKGFKKYPTTIYLNGIYYK
                     KFQTKDIESKTYNGNIINRINMNGFKDGVWLEFYETGELRERKYYENGSFLHGNTFDR
                     NGKDLHYVTESSGGITSCVQTDSLFNK"
     gene            718..1227
                     /locus_tag="VI413_10120"
     CDS             718..1227
                     /locus_tag="VI413_10120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915019.1"
                     /translation="MKTKLFTIALSVIFALSLSMPTEVSARNHRVPYWAPAHGYRVQT
                     RQVYFPDYNMYYDIQQGVYISVNNGRWSASLDLPIRLRNVNFRNSRYVELNVNSRAPQ
                     CYNDNQRGYGYDDRYYNDDRSYNNDDRRYSEYRRDNRRNDEYRNNKDDRYWNNRKERG
                     NHHNDRDDD"
     gene            1473..2723
                     /locus_tag="VI413_10125"
     CDS             1473..2723
                     /locus_tag="VI413_10125"
                     /inference="COORDINATES: protein motif:HMM:NF012516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004650 - polygalacturonase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 28 protein"
                     /protein_id="HEY6915020.1"
                     /translation="MHKLILSLGLLVISFTANSRDYVVTNFKVGTDSTKLSTKAIQKV
                     IDKASQKGGGTIVIPKGVFLTGALFFKPNTSLRLQKGAVLKGSDNIADYPLIPSRMEG
                     KKLDYYAALINAYKVDGFSITGPGTINGNGMRYWKYFWAYRDSMKLIGKSATNLEVHR
                     PRLLFIWGCNNVKISDVSLCNSGFWTTHLYQCNDVLIENCNIHSPFAPVKAPSTDGVD
                     IDVCKRVTIRKCTISVNDDAVCIKGGKGPNAHNLPENGIVEDVLVEDCTFGESHGVLT
                     LGSESIHARNIMLRNCTVESNTPLLRLKMRPDTYQIFENITIDNITGKCGSIIDMNPW
                     TQFYTMEGSNEKPYGIVRNISISNINMKCNRFGIMKGNPADTVSNVLFKNINVNATAT
                     GFKTSYKDIKTENVTVNGSPLVIE"
     gene            complement(2886..4571)
                     /locus_tag="VI413_10130"
     CDS             complement(2886..4571)
                     /locus_tag="VI413_10130"
                     /inference="COORDINATES: protein motif:HMM:NF028470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5123 domain-containing protein"
                     /protein_id="HEY6915021.1"
                     /translation="MKRILNIKILVIFTALLSMAFTSCKDDMLLGPDRLFRPILTATK
                     GMTWIQVTWDRYSDDKMYHLEISTDSFKTVLRINTTDSTQFTYTNLDFDTDYQIRIYS
                     TGDKVLSNNDTIRSRYFTTEVTTDDFPTYLISPTSADAVDNSIRVKWSKSNLVYTRIN
                     VMLNKDSVYKSVALTAADNEAGVKIISGLQPGTSYIVKIFTGDTEGDYKGKKTFKTAA
                     SQVLNGVVVDLRNYPDEQALNILTQAYIDSIATAHPALGDSVVNIVLGGGTKYILPTI
                     NIPFSANIVTGLSFSGKAIMAVNGSFGVKPATTVASLKVDKIFFSEGTTTGKTKLDGN
                     FGGTYLFNFNQADGNLKKLSIDNCDIKYKRGAVRLQTTMSLDSLVIDNCVFDSIGGYG
                     IVNNANDGSYIGDIVMTNSTVAHAEKLFVCGKAKGINSLNISRLTTCYAPGYLTAGPV
                     TTNYFFDYNTNTIPGGITVQNSLFGACAGASTYGIRTGANTATAFLNCYRTSDLVWTT
                     DLVSGAAKYPIEALSDFGKSSIDIFENPKASNFKLNSNTASGLIKTIGDPRWW"
     gene            complement(4583..6559)
                     /locus_tag="VI413_10135"
     CDS             complement(4583..6559)
                     /locus_tag="VI413_10135"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6915022.1"
                     /translation="MRTNKYITLVVLAVAGFLSSCNDLLDTTSPSNSTAEYVFSNADD
                     AKKTVLGVYALFAEDPYTSRMASVWMQNTDVEVSAPSNASSTGDRRDIWTLRGGMLES
                     FSDIKKAWDNNYLAIDRANQCIKGIKASAVANTPDMKMLLGESYCLRAYRYFLLCNFW
                     GDVPYFRDPAVPGMQLDVPKTDKNIIYSGLIQDLVNNEANMYFADEFSDGIERMNREF
                     ALGMITRLALFRAGYGMTKDGTMKRADDYLNVATNDSLAVIYTTTDGETKIARTYKEY
                     YQLAKDYAQKLISLKDRELPDYATVFMNENRWIKPKNSDVLYEVAFGNTNGGGDVGWC
                     IGVVVKASSYGTTTVQVGYSPTYYYSFDANDTRRDVCVSRIFYNKSETDQDVNGLTAM
                     NVGKWNRIYLPAAPGPSSSKGTGINWPLMRYSDVLLMLAEADNELNEGPTTLAKQLLK
                     RVRYRAFAGADYARKVDAYADSVSSGGKQAFFDALVNERAWEFGGECLRKFDLIRWNI
                     YGKKIVETQTLIDNIGKAANESELTNPDIAKYVGLAKKIYYLNNNGHINFLNFHNTAN
                     TDSINGWTNRYGDKLLSKSWWSSMVVKTTTTDSTGVSTTSYTRADFTKNCWIGYKDPT
                     GLTAVPYLLPIATQTISASVFLNNKGYGFVTSSN"
     gene            complement(6587..9871)
                     /locus_tag="VI413_10140"
     CDS             complement(6587..9871)
                     /locus_tag="VI413_10140"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6915023.1"
                     /translation="MRKLLCTLLLTILCVCYANAQTTVTGVVKDDTGELLPGASVIVK
                     GSKGGTMTDIKGKFTLKVENPSTAILKISYIGMKTFDLPLNGKTSGLSIQLESNSNQL
                     DELVVVGYGTTKKRDLTGSVTSLQGKTIADIPVTGAAEAITGRMAGVQVTTADGSPDA
                     EILVRVRGGGSITSDNTPLYIVDGFPAENINSIPPADIQSIDVLKDASSTAIYGARGA
                     NGVVIITTKSAKGGKTQISYNGFMQTKRLAKRMSVLDPYEYVKMNYELAALNGVSGLS
                     GFQKKFGVYDDIDLYKFQQGTDWQEDMFGSNVISNQHNISITGGNEKTKFALSTTYNK
                     DGGLMKSNDYTRITNNFKLSHEISKSLSLNINARLADIKVNGSGTSGGTYKIRTSDAL
                     TTAPVNGLSGFMVVDPATMTDDEYESWVNSNMSLSEKAAQYWKRRNERTYNFLGSLDW
                     KIIKGLTARTEGGFEYGFKDDQNYWGEKTTTASYVDGKPLVDWTKTSSKRMRWANTLT
                     YTTKIAEDHSLTAMVGTEYNDYSSYNTYLYATGFNVGIAPDLIFANLGLGGSTKNISS
                     YFIEPKRTFSVFGRANYNFKDKYLLGLTFRADQTSVFEPGRQWGYFPAVSAAWRINEE
                     SFMLDAKDWLSNLKLRFGYGVAGNSNVAPGLTGLTYSIKSTKTYGLGDTQNNYWASSS
                     SFPNPNLGWETNYTNNLALDFGLFNERLSGTVEVYQNTAKDLLLSYPIVAPGYTVTTG
                     NVGQTSNKGLEVSLNASIFQKKNLTLNANFNIAFNKSNVDKLANADIQEYSSGWAGTD
                     LKGYNDYRVEVGQPVGLIYGWVSDGYYTTGDFESYDANTKKYVLKTITTTNPETGETT
                     TKTVAPTSTLTGGVIGIRPGAAKFKDLNGDGTVDENDRTIIGKTAPKFTGGFGFNGTV
                     HSFDFSVLFNYVYGNKIYNANKIATTQQYRSTYGNLLNTMRQDNRYTYLDNATGTIVT
                     DLATLAVMNEGANAKEYWSPFSYGSAVVLPSSWAVEDGSFLRLQNVTVGYTIPKKLTK
                     RFACDLFRVYCTANNLFVLTNYTGYDPEVSTPVRSSSTSGLTPGVDYSSYPKSLSFIL
                     GVNVTF"
     gene            10232..10684
                     /gene="dtd"
                     /locus_tag="VI413_10145"
     CDS             10232..10684
                     /gene="dtd"
                     /locus_tag="VI413_10145"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005843922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HEY6915024.1"
                     /translation="MRVLIQRVNEASVEINQQIKSSIDAGLLVLVGIEESDTTEDSEW
                     LVGKVVGLRIFDDENGVMNRSVTDIDGEILVVSQFTLHAMTKKGNRPSYIRAARHETA
                     IPLYEHFCNSLSQKLEKEVKTGTFAADMKVALVNNGPVTIWIDSKNRE"
     gene            10769..11458
                     /gene="pssA"
                     /locus_tag="VI413_10150"
     CDS             10769..11458
                     /gene="pssA"
                     /locus_tag="VI413_10150"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009347457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003882 - CDP-diacylglycerol-serine
                     O-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEY6915025.1"
                     /translation="MIKKHVPNFITCLNLFSGCVAVFLAFKGNYQGAFIAILIAAVFD
                     FFDGFAARILKAYSPMGKELDSLADVISFGMAPGAIVFSLLSETNINEWLPYLAFLIP
                     AVSALRLAKFNIDERQTSSFIGMPTPANAIFWGGLTFSYAGLLVEYYWGLIILTMLFS
                     YLLVAEIPMFALKVKNLAWKDNQIQYIFLLVTVALLVVFQVNAFAPIIGWYILLSVLA
                     AIFNKSGGNAA"
     gene            11516..>11696
                     /locus_tag="VI413_10155"
     CDS             11516..>11696
                     /locus_tag="VI413_10155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6915026.1"
                     /translation="MSISISNLSKKYGDQTVLNNINFEIGEGEVVGFLGPNGAGKTTT
                     MKILAGALAYETGSAK"
BASE COUNT         3628 a         2443 c         2186 g         3439 t
ORIGIN      
        1 tgacgggtat aaaacaagaa tactatcaaa aataaccgct gtgacagtta ttcaaatgat
       61 aaacaaatta ttaaacagaa atatcaacaa tctaaaatca cttgtggtct aaatgcacta
      121 cgagttacaa caagaaagaa aagaaatatg aaacaatgca tactttcgaa atgcaagggg
      181 atatacatgt cgacatgtta gctccaaaag gcaaaataga aactttcaga tttaaaggat
      241 ttaagaaata ccctacaaca atttatctga acggaatata ttataaaaag tttcagacta
      301 aagacattga atccaaaact tataacggga acattatcaa caggattaat atgaatgggt
      361 tcaaggatgg agtgtggctt gaattttatg aaactggaga attaagagag agaaaatatt
      421 acgaaaacgg aagcttttta catggaaata cttttgacag aaacggtaaa gacttacatt
      481 acgttactga atcttcagga ggtatcacat catgtgtaca aaccgactca ttattcaaca
      541 aataaatgcc taacacctaa cacccgccta tgtgcattgg ctggctgacg tgcattccgg
      601 cagttttgct ccctcgttca acgtaggttg aaaactgcaa gaaaaactct ggcacagaaa
      661 ttggattatg ttgattacaa tcaaatcaac attctaatcc ttttaaaata aaacattatg
      721 aaaaccaagt tattcacaat agccctcagc gtaattttcg cacttagttt gagtatgcca
      781 acagaggttt cagcacgtaa tcacagagtt ccctactggg ctcctgctca cggttacaga
      841 gttcaaacac gacaagtcta tttccctgat tataacatgt actacgacat tcaacaaggt
      901 gtgtatatct ctgtcaacaa tggaagatgg agtgcaagcc tggacttacc tatccgatta
      961 agaaacgtga attttcgtaa ctcacgatat gtagaattaa atgtaaattc ccgcgcacct
     1021 caatgttata atgataatca acgaggatac ggatatgatg atcgctacta caacgacgac
     1081 agaagttaca ataacgacga cagaagatat tcggaataca gacgtgacaa cagacgcaat
     1141 gacgaataca gaaacaacaa agatgacaga tattggaaca accgcaaaga acgtggaaac
     1201 catcataacg accgtgacga tgactaaaag agatgttact atccccgttc aaaataaaaa
     1261 gaactcctgc aaaccaaaac ttgcaggagt tcttttttac caatcctcct tctcgtttgt
     1321 aaatacacag gcagtccgaa ccgacaaatg tacttttgca ttgaaaaaag tccattcttc
     1381 aattttaggc tgtgctattg tcaacaagct aaaagatatt ttcttttctt tgtgcttcga
     1441 aatacgacaa tctaaaaaac aattatttac acatgcataa actaatactt tccttaggtt
     1501 tattggtaat aagctttact gccaattcac gcgactacgt ggttacaaac ttcaaagtag
     1561 gcacagatag cacaaaacta agcacaaaag ccattcaaaa agtaatagac aaagcttccc
     1621 aaaaaggagg cggaacgatt gtgattccga aaggagtttt ccttaccggt gcattgtttt
     1681 ttaaacccaa caccagtttg cggttgcaaa aaggcgctgt acttaaaggt tctgataata
     1741 ttgccgatta tccgctgatt ccttcgcgca tggaaggtaa aaagcttgat tactatgccg
     1801 cacttatcaa tgcttacaag gtggatggat tcagcattac cggcccggga acaataaacg
     1861 gcaacggaat gcggtactgg aagtacttct gggcctatcg tgattcgatg aaacttattg
     1921 gcaaatcagc aactaacctg gaggttcacc gcccccgttt actttttatc tggggctgca
     1981 acaacgtaaa gatatcggat gtgagtttgt gcaattccgg tttctggaca acacatttgt
     2041 accagtgcaa cgatgttttg atagagaatt gcaatatcca ttctccgttt gcacctgtga
     2101 aagcacccag caccgatggt gtcgatattg atgtctgcaa acgggtgact atccgtaaat
     2161 gtactatttc ggtaaatgat gatgctgtat gtatcaaggg agggaaaggg ccaaatgcac
     2221 ataatctccc tgaaaatgga attgtagagg atgtgttggt ggaagactgt acattcggag
     2281 aatcgcacgg tgtattgacc ctggggagtg agagcataca cgcccgcaat atcatgttgc
     2341 gcaactgcac ggtagagagc aatactccac tgctgagact caaaatgaga ccggatacct
     2401 atcagatttt cgagaatata accatagaca atattaccgg gaaatgtggt agcattatcg
     2461 acatgaaccc ctggacacaa ttctatacta tggaaggaag caacgagaaa ccttatggta
     2521 ttgtgcgtaa tatttccatt tccaatatca atatgaaatg taaccggttt ggtataatga
     2581 aaggcaaccc tgccgacact gtatccaatg ttctgtttaa aaatatcaac gtgaatgcaa
     2641 ctgcaacagg atttaaaacc agttataaag atataaaaac cgaaaatgta actgtaaacg
     2701 gcagtccgct ggttatagaa taaagcagca aaaataatcc cgcaaagagg ggtaaatctg
     2761 ttcaatccgc atttctactc atataattaa gacagttgcg aataatcttc aaataaaaaa
     2821 aacaacaacc gcccttcagt tgtcgaagag cggttgttta aatttattgg cttactggaa
     2881 atcaactacc accaccgcgg gtcaccaatt gttttaatca agccggatgc tgtattggaa
     2941 ttcaacttaa agttgctggc tttcggattt tcgaaaatat caattgaaga tttaccaaaa
     3001 tcactcaacg cttcaatcgg atattttgca gccccggaaa ctaaatctgt tgtccaaacc
     3061 aaatcgcttg tgcgataaca gtttaaaaaa gctgtggcag tattagcacc tgttctgata
     3121 ccgtaagtgg atgcgcctgc acaagctcca aacaaactgt tttgcactgt aattccgccc
     3181 ggtatagtat tggtattata atcgaagaaa taattcgtcg ttacaggacc ggcagtcaga
     3241 tatcctggtg cataacatgt tgtcaaccgg gaaatattga gagagttaat cccttttgcc
     3301 tttccacaaa caaagagctt ttcggcatgt gctacagtac tgttagtcat aacaatatcc
     3361 ccgatatacg aaccatcatt tgcattattg acaataccat atccaccaat agaatcaaac
     3421 acacaattat caattaccaa cgaatcgaga gacatagttg tttgaagacg aactgctccg
     3481 cgcttatact taatatcgca attatcaata gacagttttt tcagatttcc atccgcttga
     3541 ttaaaattga aaagatatgt tccaccaaag tttccatcca gttttgtttt tcctgtagta
     3601 gttccttcac tgaagaatat tttatcaacc ttcaaagaag ctactgtagt tgctggtttt
     3661 actccaaaac taccatttac cgccatgatt gcttttccgg agaaactcaa accggtaaca
     3721 atattggcag agaacggaat gttaatagtt ggcaatatat acttcgtacc tccacccaaa
     3781 actatattca ccacactgtc gccgagggct gggtgagctg ttgcaatact atcaatgtaa
     3841 gcctgagtca agatgttcaa tgcctgctcg tccggataat tgcgtaaatc cacaaccaca
     3901 ccattcagaa cctgtgaagc tgcagttttg aaggttttct ttcctttata atctccttcg
     3961 gtatctccgg taaaaatctt tacaatataa gacgtaccag gctgcagacc agaaataatt
     4021 ttgactccgg cctcattatc tgcagctgtc aaagcaacag atttatatac cgaatcctta
     4081 ttcagcataa cattaattct tgtatatacc aggtttgatt tagaccactt tacacgtatt
     4141 gagttatcaa ccgcatctgc cgaagtagga gaaatcagat aagtcgggaa atcatcggta
     4201 gtcacttccg tcgtaaaata tctcgaacgg attgtgtcat tgtttgacaa cactttgtca
     4261 ccggttgaat aaatccggat ctgatagtca gtgtcaaaat cgagattagt atatgtaaat
     4321 tgtgtgctat ctgttgtatt aattctcaga acagttttaa atgagtcggt cgaaatttca
     4381 agatggtaca ttttgtcatc cgaataacga tcccacgtca cctgaatcca ggtcatacct
     4441 ttagtcgcag tcaggatagg ccgaaaaagc ctgtccggac caagcaacat atcatcttta
     4501 caacttgtaa aagccattga taacaaagct gtaaaaatta ccaatatttt tatatttaat
     4561 atccttttca tatctatcag atttaattag atgaagtaac aaatccatac cctttattat
     4621 tcaaaaatac acttgcagaa attgtctgtg tagcaattgg cagcaaataa ggcacagcag
     4681 taagccctgt agggtcttta taaccaatcc agcagttttt tgtaaaatct gcacgtgtat
     4741 aagatgtggt agaaacaccg gttgagtcgg ttgtagttgt ttttacaacc atggatgacc
     4801 accagctttt agataaaagt ttgtcaccat accggttagt ccaaccatta atagagtctg
     4861 tgtttgctgt attatggaag ttcagaaagt ttatatgccc attattattc agataataga
     4921 ttttcttcgc taaaccaaca tattttgcaa tatcagggtt cgtgagctca gattcatttg
     4981 cagctttccc tatattatca atcagggtct gggtttcaac aattttttta ccatagatat
     5041 tccaacgaat caagtcaaac ttacgaagac attcgcctcc gaattcccag gcacgctcat
     5101 ttaccaatgc atcaaaaaat gcttgtttac ctccactact tacactgtca gcgtacgcat
     5161 ctactttacg ggcgtagtca gcacctgcaa atgccctgta gcgaacccgt ttcagcaatt
     5221 gctttgccag agtggtgggt ccttcgttca gctcattatc ggcctcggca agcatcaaca
     5281 atacatccga ataacgcatc aacggccagt taatacctgt accttttgaa gaagaagggc
     5341 cgggagcagc cggcagataa atccggttcc attttcctac attcattgca gtcaaaccat
     5401 tcacatcctg gtcagtctcg gatttattgt aaaatattct cgacacacaa acatccctgc
     5461 gtgtatcgtt cgcatcaaaa gaataataat aagtaggact gtaaccaacc tgaacagtcg
     5521 ttgttccata gctactggct ttaaccacaa ctccaatgca ccaaccaaca tcaccgcccc
     5581 cattggtatt accaaaagca acttcataca aaacatcact gtttttaggt ttgatccatc
     5641 tgttttcatt catgaatact gttgcataat caggaagttc acggtctttt aaagaaatca
     5701 acttttgtgc ataatctttt gccaattggt agtattcttt atatgtgcgg gctattttgg
     5761 tctctccatc ggttgtggtg tagatcacag ccagactatc attagttgca acattcaggt
     5821 aatcatcggc gcgtttcatt gttccatctt ttgtcatacc gtagccggca cggaaaagag
     5881 ccaaccgggt aatcattcct aaagcaaatt cacggttcat ccgttcgata ccgtcgctaa
     5941 attcgtcggc aaaatacata ttcgcttcat tatttaccaa atcctgaatg agacctgaat
     6001 agataatatt cttatcagtt ttaggaacat ccaactgcat acccggaact gccgggtcgc
     6061 ggaaataagg aacatcgccc caaaaattac aaagcaggaa atagcggtaa gcacgaagac
     6121 agtaactttc gcccaaaagc attttcatat caggtgtatt ggctacagcg ctggccttta
     6181 ttcctttaat acactgattg gcacggtcaa tggccagata gttattatcc caggcttttt
     6241 tgatatcgct aaaactctcc agcatacctc cacgaagcgt ccatatatcg cgacggtctc
     6301 cggtagatga cgcattactt ggtgcactca cttccacatc ggtgttttgc atccatacag
     6361 acgccatgcg cgaggtgtat gggtcttctg caaacaaagc atagacacct aaaacggttt
     6421 ttttagcatc atctgcattc gaaaacacat attcagccgt cgagttcgat ggtgatgtgg
     6481 tgtctaacag atcattacat gacgatagaa aacctgctac cgccagtact actaatgtta
     6541 tatatttatt ggttctcata atatttttct tttttcaata cgtacatcaa aatgttacat
     6601 ttacacccag aataaaagat aagcttttcg gataggaaga gtaatcgaca ccaggagtta
     6661 agccggatgt agaactgctt cttaccggcg tgcttacttc aggatcatag ccggtataat
     6721 tagtcaatac aaacaggttg tttgcagtac aataaacacg gaacagatcg cacgcgaacc
     6781 ttttggtgag tttctttggt atagtatatc ctacggtaac gttctgcaag cgaaggaatg
     6841 atccatcttc aacagcccat gacgaaggaa gtaccacagc actaccatat gagaacggtg
     6901 accaatattc tttagcatta gcaccctcat tcatcacggc cagcgttgct aggtcagtaa
     6961 caattgtacc tgttgcattg tcaagatacg tgtaacgatt atcctggcgc atagtgttta
     7021 acaagttacc ataagttgat ctgtattgct gggttgtagc aattttattg gcgttataga
     7081 ttttgttgcc ataaacataa ttaaacagta ctgagaaatc aaaactatgc acagttccat
     7141 taaacccaaa accacctgta aatttaggtg cagttttacc gataatagta cggtcatttt
     7201 catccactgt tccgtcacca tttaaatctt taaatttggc agcacccgga cgaataccta
     7261 ttacccctcc ggtaagcgtg gatgttggtg caacagtttt tgttgtagtt tcaccggttt
     7321 caggattcgt agttgtaatg gttttcagta catacttctt ggtatttgca tcgtatgatt
     7381 cgaaatcacc ggtagtataa tatccatcgc tcacccaacc ataaattaaa ccaaccggtt
     7441 gcccaacttc aacccgatag tcattatagc ctttcaggtc tgtacctgcc caaccggaag
     7501 agtattcctg tatatcggca ttagccagtt tatccacatt cgatttatta aacgctatat
     7561 taaaattagc atttaaagtg agattctttt tttggaatat agaagcattt aaagaaactt
     7621 ccaatccttt gttggaagtc tgaccaacat ttcccgtagt aacagtatag cccggagcga
     7681 caatcgggta agataataaa agatcttttg ccgtattttg atatacttcg actgtacctg
     7741 ataagcgttc gttaaacaaa ccaaaatcta acgcaaggtt gttcgtatag tttgtctccc
     7801 aacccagatt tggattaggg aaactacttg agctagccca ataattattc tgggtatctc
     7861 ctaaaccata cgttttagtt gattttatcg aataagtcag acctgtcaat cccggagcta
     7921 cattactatt tccggccacg ccataaccaa atctcaattt cagatttgac aaccagtctt
     7981 ttgcatcaag cataaaactt tcttcgttga tacgccaggc agctgaaaca gcagggaagt
     8041 atccccattg gcgtccgggt tcgaaaacac tggtttggtc agcacgaaac gtcaaaccca
     8101 aaagatattt atccttgaaa ttgtaatttg cccgaccaaa aactgaaaaa gtacgtttgg
     8161 gttcaatgaa ataacttgag atattttttg tagaacctcc caatcctaag ttcgcaaaga
     8221 ttaaatcagg agcaataccc acattgaatc cggtagcgta caaataagta ttataagagc
     8281 tatagtcatt atattcagta ccaaccatgg ctgtcagact gtgatcttca gcaattttag
     8341 tggtataagt caacgtattt gcccaccgca ttcttttgga tgatgtcttt gtccaatcta
     8401 caagtggttt tccatctaca taagaagcag tggtcgtctt ttcaccccaa tagttttggt
     8461 catctttaaa tccgtactca aaaccacctt cggttcgcgc cgtcaatcct ttaataattt
     8521 tccagtctaa actaccaaga aaattataag tccgttcatt acgacgtttc caatattgcg
     8581 cagccttttc cgaaagggac atgttggagt ttacccaact ttcatattca tcatcagtca
     8641 tagttgccgg atcaacaacc ataaacccgc ttaatccatt tacaggtgca gtggttaaag
     8701 catctgaagt acggattttg taagttccac ctgaggttcc cgaaccattt accttgatat
     8761 cagcaagcct tgcattaatg ttcaggctaa ggctttttga tatttcatga gataatttaa
     8821 agttattggt tatacgcgta taatcattac ttttcatcag tcccccatct ttattataag
     8881 tagtgctcag agcaaatttc gttttctcat ttccacctgt aatgctgata ttgtgctgat
     8941 tagagatcac atttgagcca aacatatctt cctgccaatc agtcccttgt tgaaacttat
     9001 acaaatcgat atcatcgtaa accccaaatt ttttctgaaa tccactaagc cctgaaactc
     9061 catttaacgc ggctaactca taattcattt ttacatattc ataggggtca agtaccgaca
     9121 tacgttttgc cagtcgtttt gtctgcataa aaccattgta tgaaatttgg gtttttccac
     9181 ctttagcaga tttagttgtg ataataacta ctccattagc accacgggca ccataaatag
     9241 cagttgaaga agcatctttc aaaacatcaa tactttgaat gtcagccgga gggatactat
     9301 taatattttc tgcaggaaat ccatcaacaa tgtaaagcgg agtattgtcg gacgtgattg
     9361 aacccccacc acgaacacga accaggattt ccgcatcagg cgatccatcg gcagttgtaa
     9421 cctgtacacc ggccatacgt cctgtaattg cttctgcggc tcctgttaca ggaatatcgg
     9481 ctatcgtttt tccttgtaaa gaagttactg acccggtaag gtctcttttc ttggtggtac
     9541 cgtatccaac cacaacaagt tcatccaatt gattggagtt tgactccaac tggattgaaa
     9601 ggccggaagt ttttccattt aatgggaggt caaaagtctt catacctatg tacgaaattt
     9661 tcaaaatggc tgttgaagga ttttcaactt tcagagtgaa cttacctttg atgtcggtca
     9721 tagttccacc tttcgagcct ttaacaataa ctgatgctcc gggaagtaat tcgccggtat
     9781 catccttaac aacaccagtg acggtggtct gtgcattcgc ataacaaaca caaaggattg
     9841 tcagcagcaa tgtgcagagt agttttctca taaaaattag attagtgtaa ataaataatc
     9901 gtttgtatct ttcgttttcg aaatttatca aggacaaaga aacactaata aatgtggaag
     9961 aatgtgcaga aatcggtaaa caagttgcat attttgggat aaccattaaa tattctaaat
    10021 ttatattttt attcttttta gcacttacat gcaggtttac agggcattat ataaataatc
    10081 aagtccacaa tattattcta ctttagacac ggtagatatt agatccattt gcccgtaaaa
    10141 atagaaataa tctaaactga attcccgata aaattgacta tccacaattt tttgtaattt
    10201 tgctgctcat aatcagattt agagcaaaaa aatgcgggta ttaattcagc gggtaaatga
    10261 agcttcagtg gaaattaacc aacaaataaa atcttccatc gatgctggat tattagtgct
    10321 ggtgggaatt gaagaaagcg atacaaccga agacagcgaa tggttggttg gcaaagtagt
    10381 ggggctacgt atttttgacg atgaaaacgg cgtgatgaat cgctctgtaa ccgacattga
    10441 cggtgaaatt ctggttgtaa gccagttcac acttcacgcc atgaccaaaa aagggaatcg
    10501 cccgtcgtat atcagggctg ccaggcacga aacagccatt ccactgtacg agcatttttg
    10561 caattcgctc agccaaaagc ttgaaaagga agtaaaaaca ggcacttttg ccgctgacat
    10621 gaaagtggcg ctggtaaata atggtccggt aaccatttgg atagattcga aaaacagaga
    10681 atgagttaat tcattaactg gtcgactagt aactcagttt taaatcaaat ataaatttgt
    10741 aaaattcgct ttaatcagtc ccattactat gataaagaaa catgtcccca attttataac
    10801 ctgtctcaac ctgttctcgg gttgtgtagc tgtttttctg gcattcaagg gtaattatca
    10861 gggcgcattt atcgccattc tgattgcggc agttttcgat tttttcgatg gatttgcagc
    10921 acgcatactg aaagcgtatt cccctatggg caaggaactg gattcactgg ccgatgtaat
    10981 tagttttggt atggcacctg gtgctattgt tttctcactt ttgtccgaga caaatatcaa
    11041 cgaatggttg ccttatctgg cttttcttat tccggctgtt tcagctctac gtctggcaaa
    11101 attcaatatt gacgaacgcc agacttcttc atttatcgga atgcccacac cggcaaatgc
    11161 cattttctgg ggcggtttga cattttcata tgcaggtttg ctggttgaat attattgggg
    11221 attaatcata cttaccatgt tattcagcta tttattggtt gccgaaatac cgatgtttgc
    11281 cttaaaagtg aaaaacttag cctggaaaga caatcagatc caatacattt ttctgctggt
    11341 gacggttgcc cttctggttg tttttcaggt aaatgccttt gctcctataa tcggttggta
    11401 cattttgttg tctgttctgg ctgccatttt caacaaatcg ggtggcaatg cagcctgatt
    11461 ttccattccc attcagaatt agtacttttg caaattcaat tgtaatacag taattgtgtc
    11521 aatcagcatc tcaaatcttt cgaaaaaata cggcgaccaa accgttctca acaacatcaa
    11581 ttttgaaatt ggtgaaggcg aagtggttgg ttttctgggg ccaaacgggg caggaaaaac
    11641 cacaacgatg aagatactgg ccggagcatt ggcttacgaa accggttcgg caaaaa
//
LOCUS       DATDNM010000598         5271 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_821750, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000598 DATDNM010000000
VERSION     DATDNM010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5271
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_821750"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1203)
                     /locus_tag="VI413_10160"
     CDS             complement(<1..1203)
                     /locus_tag="VI413_10160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007844888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide lyase"
                     /protein_id="HEY6915027.1"
                     /translation="MNNKTFLKIAAALLFAPVAMYAQYPDVPSDLKAQADKMIQTENA
                     YVDSVMNANKAILKAEKCNGKPYIPWAARPTDLPVAKIPAFPGAEGGGQYSFGGRGGK
                     VITVTSLEDRGPGTLREACEGSVGARIVVFNVAGIIHLKTPIIVYAPYLTIAGQTAPG
                     DGVCVAGESFWVNTHDVVVRHMRFRRGETKVERRDDSFGGNPVGNIMIDHCSCMWGLD
                     ENISFYRHMFNPGAGIKEEKLPTVNVTIQNTISAQALDTYNHAFGSTLGGENCSFMRN
                     LWANNAGRNPSIGWNGVFNFVNNVIYNWANRSVDGGDYTALYNIINNYYKPGPLTPKD
                     APIGHRILKPESGRAKLGYLVFGRVYCNGNIMEGNDAVTKNNWNGGVQVEEMENAGQY
                     TDSMKWNEP"
     gene            complement(1369..2532)
                     /locus_tag="VI413_10165"
     CDS             complement(1369..2532)
                     /locus_tag="VI413_10165"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915028.1"
                     /translation="MKNITKLFIVAIFVSLSVTSFAQDCGGNYYITSNAGWSNSEYYR
                     IIDIDAATLTDAALPKFSAADGAKNALEADFGTGYFRTPVWTTTDGTVYTPTTVMWPV
                     NYKMAAFAPTMYNSAYTKVNVLGTVPSGGGATVACTLNDNSVKQSGIWSKPGFIELSR
                     LASAVLNTPPSRHGYIEIDSLPQVERIQWSYSSTSWKRGVKADINYNDGNGWQPLRWV
                     ASDYSAWEASFSEQGYQFEEMINKQDDPNSFVSVRFRIWDGDSIHYKVNANDLSLQTT
                     TYTATMTPLAQKQTVRIHQIKVFSNIIPNVAPGPKIISGVRNVNADVIKIYKSGNNIV
                     LGEEANVELYTVEGKKIFKGLTKQIDVSGFSNGIYIIKAVANDGKIQNKKIII"
     gene            complement(2628..4388)
                     /locus_tag="VI413_10170"
     CDS             complement(2628..4388)
                     /locus_tag="VI413_10170"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915029.1"
                     /translation="MKKQFSWAILLLIFSISTVSSQTPAFPTAEGFGKFTSGGRGGQV
                     VEVTSLADYLTTEIPIPGTLRWALAQYSGQPLTVVFRVSGIIALKADLRSSRANLTIA
                     GQTAPGDGICIRGGKMNFGGSVNLLIRHVRFRIGLSNGNDGTFLAGGSLGFENGSNAI
                     FDHCTFGWAGEENVTMYDDHYITVQWCILHEGLYTAGHAKGERSYACQWAGSPATMHH
                     NLLAHNVNRSCRFNGANNASGDRNVLIDYVNNVNYNWGKVNSCYGGEREAGKFSTHEV
                     NFVGNYYKPGPATPTSGSYFFEQSAARSGYVLAGPSYWYVTGNVMEGDASGTADNWMR
                     VHNNTSYPIDSLKSLNARVIPDAYKIAYTTAQEAYAAVLAKAGAFPRDTVDRRIVNEV
                     ATKTASGKGTIEKYPSSISGTDTTWTTNKYYNLVKGIIDQPAGAGGYPAYNTFNEIVD
                     NDHDGMADAWETANGLNPADATDRNLLTKDGYTALEVYLNSLVGEMIEHDFKAAGIAQ
                     VTAHKIELFPTIATDKLMLTSSLSLKSVSFFSLDGTEIRNIIVDGNSSIGVTFLKQGC
                     YMVRVTTESGDSEQFKLVKK"
     gene            complement(4501..>5271)
                     /locus_tag="VI413_10175"
     CDS             complement(4501..>5271)
                     /locus_tag="VI413_10175"
                     /inference="COORDINATES: protein motif:HMM:NF013276.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030599 - pectinesterase activity
                     [Evidence IEA];
                     GO_process: GO:0042545 - cell wall modification [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pectinesterase family protein"
                     /protein_id="HEY6915030.1"
                     /translation="NIIANSDVSASSYTLGRPWNTNAGAFYLNCKLGNHIKSVGWTAM
                     GGNETSAFFAEYNSMDANGNPIDISGRVSWSFQLPKADVDSFLTPKKAYAASYTTAYD
                     PVSLCISPLSPTNVTLVSNILSWNAVDGVAGYLIYKNNKFLEAVSETTFTDNSNESGS
                     YSVMSVANSGVLSPAATALTALHNVNESNVNVAVSNGNILFSKPVTYTIYNLNGKKIA
                     TSTNFTDYVSTTNIPQGIYLLHLKDESFNEKKMKVNLP"
BASE COUNT         1512 a         1172 c          976 g         1611 t
ORIGIN      
        1 tggctcattc catttcatcg aatcggtata ctgaccggca ttttccattt cctctacctg
       61 tacaccaccg ttccagttgt ttttggttac ggcatcgtta ccttccataa tgtttccgtt
      121 acaatatacg cggccaaata ccaggtatcc cagtttggca cgacccgatt ccggtttcag
      181 gatacggtgt ccgataggag catcttttgg agtaagcgga cctggtttat aatagttgtt
      241 gatgatattg tacaatgctg tataatcacc gccatccacc gaacggttag cccagttgta
      301 gataacgtta tttacaaagt tgaaaacgcc attccaacca atagacgggt ttcgtccagc
      361 attgttagcc cacaggttac gcataaatga gcagttttcg ccacccagcg tgctaccaaa
      421 agcatggtta taagtgtcca gcgcttgcgc cgaaatggtg ttctgaatag taacattcac
      481 cgtaggcagt ttttcttctt ttattccggc tccgggattg aacatgtgac ggtaaaacga
      541 tatattttca tccaatcccc acatgcacga acagtggtcg atcatgatgt ttcccaccgg
      601 atttcctccg aaagagtcat cgcggcgctc tactttagtt tcaccacggc ggaaacgcat
      661 gtgacgtacc accacatcgt gcgtatttac ccagaacgat tcgccggcta cacaaacgcc
      721 atcgccggga gctgtctggc ctgcaatagt caggtaagga gcataaacaa taattggcgt
      781 cttcaaatga ataataccag caacattgaa taccacaata cgagcaccaa cagatccttc
      841 acacgcctcg cgcaatgtac cgggaccgcg gtcctcgaga ctcgttacgg taatcacctt
      901 tccaccgcgt ccgccaaacg aatattggcc tccgccttca gcacccggaa aagcaggaat
      961 ctttgcaacc ggaagatctg taggacgtgc agcccatgga atgtatggct taccgttgca
     1021 tttttctgcc ttcagaattg ctttattggc attcattacg ctgtctacgt aagcattttc
     1081 agtctgtatc attttatcgg cctgcgcctt taaatcggat gggacatccg gatattgcgc
     1141 atacattgca actggtgcaa aaagcaaggc agcagcgatt ttcagaaatg ttttgttgtt
     1201 cattttattg ataataatta gtaattagtg gagtattgaa taacattaat aaagacgctg
     1261 aacaactgca attgtactca aaaaaaggca attccacaaa tagaaaatgg aggttccggc
     1321 attaaagccc gaacccccat tcttcatctt aaaaaaccaa aatttatttt agattattat
     1381 tttcttattc tgtattttgc catcattggc cacagcttta attatgtaga ttccgttaga
     1441 aaatcctgaa acatctattt gttttgtgag gcctttgaaa atctttttgc cttctacagt
     1501 atataattca acgtttgctt cttcgcctaa tacgatgttg ttacctgatt tatagatttt
     1561 aatcacatca gcatttacat ttcttacacc acttattatt ttcggtccgg gagcaacatt
     1621 aggaataata ttgctgaaaa ctttaatctg atggatacga acagtttgct tttgagccaa
     1681 cggtgtcatt gtagcagtat aagttgtagt ttgcaagctt aaatcatttg cattcacttt
     1741 ataatgaata ctatcgccat cccaaatacg gaaccgtact gatacaaacg aatttggatc
     1801 gtcctgtttg ttaatcattt cttcaaattg atagccttgt tcagagaaag aagcctccca
     1861 tgcactataa tcacttgcaa cccaccgtaa tggttgccac ccattaccat cattgtaatt
     1921 aatatcggcc tttactccac gtttccatga ggttgacgaa tatgaccatt gaattcgttc
     1981 cacctggggc aagctatcaa tttcaatata cccatgtcga ctaggaggcg tatttaatac
     2041 agcagaggca agtcggctta attcaataaa tccgggttta ctccagatac cactttgctt
     2101 aactgaatta tcatttagag tacatgcaac agttgcacca cctcccgaag gtactgttcc
     2161 caacacattt acttttgtat aagcactgtt atacatagta ggggcaaatg cagccatttt
     2221 ataattcacg ggccacataa ctgttgtcgg tgtatataca gttccatcag ttgttgtcca
     2281 caccggagtt ctgaaatagc cggttccaaa atcggcctca agggcatttt ttgcaccatc
     2341 agcagcagag aatttaggca aagccgcatc tgtcaatgtt gcagcatcga tgtcaataat
     2401 tctgtagtac tctgaatttg accaaccggc attagaagta atataataat tacctccaca
     2461 atcctgagca aatgaagtta ctgacagact tacaaaaatt gccacgataa atagtttagt
     2521 aatgtttttc atataataat tgcattttaa agttactgtt tatgttatat tgacgtatca
     2581 aattaataaa tgtacttact tgaggaaaaa ttattcaaaa aattaattta cttctttacg
     2641 agtttaaatt gttcactatc tccgctttca gtagtaactc ttaccatata acagccttgc
     2701 ttcaaaaaag ttacaccaat cgaactattc ccatcaacaa ttatatttct tatttcagtt
     2761 ccgtccagcg aaaaaaacga aacagatttc aacgacagac ttgatgttag cattaactta
     2821 tctgttgcaa tagttggaaa gagttcaatt ttatgtgccg taacctgagc aatacctgct
     2881 gctttaaaat cgtgctcaat catctcacca acgagactgt tcagataaac ttccaacgcg
     2941 gtataaccat cctttgtcaa caaattgcgg tcagttgcat cagcgggatt aagtccgttt
     3001 gcagtttccc acgcatctgc cattccatca tgatcattat caacaatttc attgaaagta
     3061 ttatacgcag gataaccgcc ggcaccagct ggttgatcaa taattccctt taccaaattg
     3121 taatatttgt ttgttgtcca ggtagtgtct gttcctgaaa ttgaacttgg atatttttca
     3181 attgtgcctt tacccgatgc tgttttagta gcaacttcat taacaatccg acgatcaacc
     3241 gtatcacgtg gaaatgcacc tgctttagct aatacagctg catatgcttc ctgagcagtt
     3301 gtatatgcta tcttgtaagc atctggaatc actctggcat ttaagctttt taatgaatca
     3361 atcggatagc tggtattatt atgaacccgc atccagttgt cggccgtacc tgaagcatcg
     3421 ccctccataa cattgcctgt gacataccaa tatgatggcc ctgccaacac ataccccgaa
     3481 cgggcggcag actgctcaaa gaaataactc ccgctggttg gagtggctgg tcccggctta
     3541 taatagttac ctacaaagtt tacctcatgt gtagagaatt ttccggcttc acgttcgcca
     3601 ccgtaacatg aatttacttt tccccaattg taatttacgt tgtttacata atcaatcaat
     3661 acatttctat caccggaagc attattagct ccattaaaac ggcaagagcg attcacattg
     3721 tgtgccaaca aattatgatg cattgttgcc ggtgatcctg cccattggca agcataactg
     3781 cgttctccct tggcatgacc tgccgtatag agtccttcgt gcagaataca ccattgaact
     3841 gtaatataat ggtcgtcgta catggtcacg ttttcttcac ccgcccatcc gaaagtacaa
     3901 tggtcaaaaa tggcattact tccgttttca aaacctaaag agcctccggc aaggaaagtt
     3961 ccatcgtttc cgttactcaa tccgattctg aaacggacat ggcgaataag aagattcacc
     4021 gaacctccaa aattcatctt tccaccacgt atgcaaatac catcgccggg tgctgtttga
     4081 cctgcaattg taagattggc acgtgaagag cgtaaatcgg ccttgagagc aataattccg
     4141 gagacacgga atacaactgt cagaggttgg ccactatatt gagccaatgc ccaacgcaaa
     4201 gtaccgggaa ttggaatttc tgttgtcaga taatctgcaa gtgaagttac ctccaccact
     4261 tgtccgcctc gaccacccga ggtgaactta ccaaaccctt cggcagttgg aaatgccgga
     4321 gtttgagaag atacagttga tattgagaaa atgagcaaaa gtattgccca gctgaactgt
     4381 tttttcattt atgtgtattt aatcggttat aatttatata gctacaaaaa tatgtcatca
     4441 atgaaatcgt tgataggcat aattggttta atttgtggag aaactgatat ttagagctaa
     4501 ttagggaaga tttactttca ttttcttctc attgaaactc tcgtctttaa gatgcaataa
     4561 atatattccc tgcgggatat ttgttgttga tacataatct gtaaaattcg ttgaagtagc
     4621 tatttttttt ccgtttaaat tgtaaattgt atatgtgaca ggtttcgaaa aaagaatatt
     4681 cccgtttgaa acagcgacat ttacgttcga ttcatttaca ttatgtaatg ctgtcaacgc
     4741 ggttgctgca ggactcaata ctcctgaatt tgctacactc atcactgagt atgatccgct
     4801 ttcatttgaa ttgtccgtga acgttgtttc acttacagcc tccagaaatt tattgttttt
     4861 ataaatcaaa taacctgcaa ccccatcaac tgcattccat gataaaatat tacttaccag
     4921 agtcacattc gttggtgaaa gaggtgagat acacaggctt acggggtcgt atgctgttgt
     4981 gtaagaagct gcatatgctt ttttcggcgt gagaaagcta tctacatctg cttttggaag
     5041 ctgaaaactc cagcttaccc gacccgaaat atcaattggg ttaccgtttg catccatact
     5101 attgtattct gcaaaaaaag cactggtttc atttccaccc atggctgtcc aaccaacaga
     5161 tttgatatga ttaccaagct tgcaattcag atagaatgcc cctgcatttg tgttccaggg
     5221 tctgccaagg gtataactgc ttgcagacac atctgaatta gcaatgatat t
//
LOCUS       DATDNM010000599         5463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1035587, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000599 DATDNM010000000
VERSION     DATDNM010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5463
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1035587"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..690
                     /locus_tag="VI413_10180"
     CDS             <1..690
                     /locus_tag="VI413_10180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007658094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY6915031.1"
                     /translation="GSPKRFKNLLGVTFGTGFGGGIVINGKLHMGDNGAGGDVWVFRH
                     KKHRNCITEEGVGVAAIKRIYAEFSGDTVSDLSPKDIYDIAEGTKEGNKEAALKTFAE
                     MGEESGDTIAHAITLVDGLVVIGGGLTGASKFFMPALMNELNGTIGRLNGEIFSRLQM
                     KAYNLDNEQELVEFLKGNSSLVNVPGTTKMVNYDSAKRIGIAISKLGASKAIALGAYA
                     FALNVLDSEEV"
     gene            717..1892
                     /locus_tag="VI413_10185"
     CDS             717..1892
                     /locus_tag="VI413_10185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010261409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6915032.1"
                     /translation="MKNNNSISKILPVLFGFFIMGFCDVVGITSMHVKEDLLGSYSPE
                     FRDTLSNLIPVALFSMFLIFSVPTGILMNKIGRKKTVLLSNVITIVAMFIPLIQYSFV
                     MSLLAFALLGIANTILQVSLNPLLTNVVQGDKLTSSLTAGQFVKAISSFCGPFIAAFA
                     ASQLGNWQYIFPIYAVITLISTIWLMATAIKEEPIINKASTFGNVFSLLKDKTILFLF
                     LGIVFVVGVDVGLNTAAPKILMERCGMNSIDAGYGPSMYFAFRTAGAFIGAILLAKYS
                     STRIFKIITLVASLALIALIFTTGKIAIFALFAIIGISIANVFSIIFSLAIQSRPEKA
                     NEISGLMITGVFGGAVIPFVMGLTSDALGSQVGSVLIILISSVYLLFCAFAVKTKAL"
     gene            complement(2246..3802)
                     /locus_tag="VI413_10190"
     CDS             complement(2246..3802)
                     /locus_tag="VI413_10190"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY6915033.1"
                     /translation="MRQFQNTTSSKSDSSVEEEGSFQSFESFIQNFKNTLKKVFHDEN
                     DIDQMGITRGISPEVLGQIMDCKPLSVAIPTEYGGRGGKVQESLQLLSAASYESLALS
                     LTLGINSALFLQPFAKYGQDVVKPEVFGRFLHNQNMGGLMITEPGFGSDALNMQASYK
                     EEADHYHLKGTKHWAGLTGQADYWLLTARKRTEQGGLQRDIDFFVCDNTHRDQKIIVE
                     ERFENLGLYQIPYGRNILDVKIPKIQRLIPHTNGVQMMLDLLHRSRLHFPGMGLGFVK
                     RMLDEAIAHCQQRLVGAKNLFSYDQVQQHLSRLQANFTIISAFCKHSSGVAGIENDLT
                     PLGLEANIIKTVTTDLMQDSSQTLLTLVGAKGYKLNHIAGRGTVDSRPFMIFEGSNDI
                     LYAQIGEAVVKLMKTAKENALYVFLEGHRLSENAVKQVKDLISFNLDLQMPQRKLVEL
                     GRVISRVVSMDMVIKMGDAGFRNDLVDGAISMLRQEIATLVSHFAYQQPTQVVVDYQD
                     NSSWNDFVIV"
     gene            complement(4088..>5463)
                     /locus_tag="VI413_10195"
     CDS             complement(4088..>5463)
                     /locus_tag="VI413_10195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6915034.1"
                     /translation="NTEQSVYNGLDLEMGTWTDGLTTKGTSPYSAYYLANPYLQGLKS
                     GKYSIRELDQKVTRLLRMIFRTTMSADRPFGKYVSPEHSEAARKIAEQGIVLLKNDKQ
                     TLPVAVSSKKQIVVVGENAVRSLVIGGGSSSLKVAYEISPLQGLKNKYGQEHIQYAAG
                     YTSKDKATPALKDSLLYAAVGLAKTADVVLFVGGLNKDFLQDSEGDDRKSLALPYEQS
                     KLISELAKVNKNVVVILASGNAVEMPWLSNVQAVLQAWYLGSEAGNAIANIVSGDVNP
                     TGKLPFSFPKKIEDNAAHSFGTMSYPGDGKKQEYMEDILVGYRWFDTKKISPLFPFGY
                     GLSYTTFEYGKISTDKKEYASNETIKLSFTLKNTGKTAGAEIAQIYMSQPKASVVRPV
                     KELKSFKKVFLSAGETRTVELEVKVQDMAFYNDKTHAWEVEPGEFVLCNASSSADVKS
                     KISVRII"
BASE COUNT         1568 a         1103 c         1074 g         1718 t
ORIGIN      
        1 ggcagcccaa agcgtttcaa aaatctcctg ggagtaactt tcggaaccgg atttggcggc
       61 ggaattgtaa ttaatggcaa gttgcacatg ggcgataacg gtgccggtgg cgatgtatgg
      121 gttttccgtc acaaaaagca ccgtaactgc attacagaag aaggtgtagg tgtagcagcc
      181 atcaaacgta tatatgccga attctctggt gatacagtat cagatctttc tccaaaagac
      241 atttatgata ttgcggaagg cacaaaagaa ggaaataagg aagctgcttt gaaaactttc
      301 gcagaaatgg gcgaagaatc tggtgatacc attgctcatg caataacatt ggtggacggt
      361 ttggtagtta ttggcggcgg attgacaggc gcttctaaat tctttatgcc tgccctgatg
      421 aacgaactta atggaaccat tggccggttg aatggagaaa ttttctccag attgcaaatg
      481 aaagcttata atttggacaa tgagcaagag cttgttgaat ttctcaaagg aaattcaagc
      541 cttgtaaatg taccgggaac aaccaaaatg gtaaattacg attcggcaaa aagaataggt
      601 attgccattt caaaactcgg agccagcaaa gcaattgcct taggtgcata tgcttttgca
      661 ctaaacgtgc tggattctga agaagtataa aattattatt ctgataaatc atacaaatga
      721 aaaacaataa ttcaatttca aagattctac cggtgctctt tggtttcttc atcatgggct
      781 tctgcgatgt ggtaggaatc acatctatgc atgtgaaaga agatttgctg ggtagctata
      841 gccctgagtt cagagacaca ctttcgaatc tgattccggt ggcattattt tctatgttcc
      901 ttatattctc ggtaccaact ggtatattga tgaataaaat tggccgcaaa aaaacggttc
      961 ttttgagtaa tgtaatcact atcgtggcaa tgtttattcc attgattcag tacagctttg
     1021 tgatgtctct gctggccttt gcattgctgg gcattgctaa caccatttta caggtatctt
     1081 taaatcctct gttaaccaat gttgttcagg gcgacaaact gacatcaagc cttacggccg
     1141 gacagtttgt gaaggccatt tcgtcgttct gcggaccatt tattgctgct tttgctgctt
     1201 cgcaattagg aaattggcag tatatctttc ctatatacgc cgttatcacc ttaatttcaa
     1261 ccatttggtt gatggcaacg gctattaagg aagaaccaat aataaacaaa gccagtactt
     1321 ttggaaatgt attcagtctt ttgaaagata aaacaatatt gtttttgttt ttaggaatag
     1381 ttttcgtggt tggggttgat gttggtttga atacggctgc acctaaaatt ttgatggagc
     1441 gttgtggcat gaactctatt gatgcaggtt acgggcctag tatgtatttt gcattccgaa
     1501 ccgcaggagc atttattgga gcaatactgc tggcaaaata ctcctcaacc cggatattta
     1561 aaatcattac tttagttgca tcattagcct tgattgcact tatttttaca actggtaaga
     1621 tagccatttt tgcattgttt gctattatcg gtatttcaat tgccaatgta ttctccatta
     1681 tcttttcgtt agccattcaa tcgcgtcccg aaaaagcgaa cgaaatttcg ggattaatga
     1741 taaccggagt ttttggggga gcagttattc cgtttgtaat gggattaacc agtgatgctt
     1801 tgggttctca ggttggatct gtactgatta ttttaattag ttctgtttat ctgctgttct
     1861 gtgcttttgc agtaaaaaca aaagctctat aatacatcgc tgtttatttt aattgttcac
     1921 tattagtttt agaattgaag gaatgtttga cattttcaat gtcaggcatt cttttgttta
     1981 tatttcgaat aaaacattta gcatataatc tgtcagcaaa aacataagat ttacaaacaa
     2041 gtgctgtttt aaaaattatt atggacagca tcagcaaata aatcccccat caagcctttg
     2101 ggattgcaca atctttcttc cggcttcaat actaataagt ttatatggaa tgagaaaccg
     2161 cccaatctaa aatttcagat tgggcggttc ttgttgtatt tgttcggagt gcgactttga
     2221 gtcgtgcccg aataaaaaat tggcattata caattacaaa atcattccac gagctattat
     2281 cctgataatc tacaactacc tgagttggct gttgatatgc aaaatggctc accaatgtgg
     2341 cgatttcctg acgaagcatt gaaatggcgc catcaaccaa atcgtttctg aaaccagcat
     2401 ctcccatttt aataaccata tccatggaaa caacgcgact gataacacgg ccaagttcaa
     2461 caagttttcg ctgtggcatt tgcaaatcaa gattaaagct aatcaaatct ttcacctgtt
     2521 ttacagcgtt ttcggacaat ctgtgacctt caagaaatac atacaacgca ttttctttgg
     2581 cagttttcat aagttttacc actgcctctc caatttgggc atataaaatg tcattcgaac
     2641 cttcaaaaat cataaacgga cggctatcaa ctgttccacg gcctgcaata tgattaagtt
     2701 tgtagccttt tgcaccaacc aacgtcagca aagtttgcga tgaatcctgc attaaatcag
     2761 tagtaactgt ttttattata ttagcttcga gcccgagtgg tgtcaggtca ttttcgattc
     2821 ccgcaactcc tgaactatgc ttgcagaatg ctgagataat cgtaaaattg gcctgaagcc
     2881 gtgataaatg ctgttgaacc tgatcgtacg aaaacaaatt tttcgctccc accaatcgct
     2941 gctggcaatg cgctatggct tcatcgagca ttcgtttcac aaagcccaaa cccatacccg
     3001 ggaaatgcag gcgactgcgg tgcaataagt ccagcatcat ttgaactcca ttagtatgag
     3061 gaataagccg ctgtatttta ggaattttca catccaatat attgcgccca tacggaatct
     3121 gataaagccc aagattttca aaacgttctt ctactatgat tttctgatca cgatgcgtat
     3181 tatcacaaac aaaaaagtcg atatcacgct ggagtccgcc ctgttccgtt cgtttgcggg
     3241 cagtaagcag ccagtaatca gcttgtccgg tcagcccggc ccagtgtttt gtacctttaa
     3301 ggtgatagtg atccgcttct tctttatacg aagcttgcat attcaacgca tcgcttccga
     3361 agccaggctc ggtaatcatt aatccgccca tattctggtt atgtaaaaaa cgtccgaaga
     3421 cttcgggttt aaccacatcc tgtccgtatt tagcaaaggg ttgcaggaaa agtgcgctgt
     3481 taatccccag cgttaaggat aatgcgagtg attcgtacga cgcggctgac aaaagctgaa
     3541 ggctttcctg cacttttcca ccgcgaccgc catattctgt aggaatagct accgaaagtg
     3601 gcttgcaatc cataatttga ccgagtactt ccggcgaaat accacgggta attcccatct
     3661 gatcaatgtc attttcatcg tgaaagacct ttttcagtgt gtttttgaag ttttgaatga
     3721 atgattcaaa agattgaaat gatccttcct cttcaacgga agaatctgat ttgcttgaag
     3781 ttgtgttttg aaattgacgc atattcatta attgttttat tttggcacat gtactttgtt
     3841 acaaatatag tattaagaaa caagtataac gattaaaagt tttgatatac aataatttaa
     3901 ccgcataatt atgcagtaaa acagcattta attcattatt gttttataaa tacttattac
     3961 tttgcacaaa ttcaattcga aaaacacaaa ctaaatttaa ttgctacact attatttgct
     4021 cataacaaac accccaatct gtttgtttca gattggggtg gttcgttatt tataaaacta
     4081 ttgagtttta tattattctg actgagattt tactctttac atctgccgaa gatgatgcat
     4141 tgcaaagcac aaattcaccc ggctccacct cccatgcatg agttttatca ttgtaaaatg
     4201 ccatatcctg cacttttact tctaattcaa cagttctggt ttcaccagca ctcagaaaaa
     4261 cttttttaaa tgatttgagt tctttgacgg gacgcacaac cgaagctttg ggctgcgaca
     4321 tataaatctg ggcaatttcg gctcccgcag ttttccctgt atttttaagt gtaaaagaca
     4381 gtttaattgt ttcgttagat gcatattctt ttttgtctgt agaaatttta ccatattcaa
     4441 atgtggtata gctcagtcca taaccaaagg ggaataatgg tgaaatcttt tttgtatcaa
     4501 accaacggta acctacgagg atatcttcca tgtattcctg ttttttacca tcaccggggt
     4561 acgacatggt tccaaaggaa tgcgcagcat tgtcttcaat ctttttaggg aaagagaatg
     4621 gcagcttgcc cgttgggttt acatcccctg aaacaatgtt agcaatggca ttgcctgctt
     4681 ccgacccaag ataccatgcc tgcaaaacag cctgcacatt gcttaaccag ggcatttcta
     4741 cagcatttcc gctggcaaga attaccacta cgtttttatt tactttggcc aattccgaaa
     4801 tcagtttact ttgctcataa ggtaaagcaa gtgatttgcg gtcatcgcct tcgctatcct
     4861 gtaggaaatc tttgttaagt cctccaacaa aaagtaccac atcggcagtt ttggccaacc
     4921 cgactgcagc atacagtaac gaatctttga gagctggagt agccttatct ttcgatgtgt
     4981 aaccagcagc atattgaata tgctcctgac catatttgtt tttcagaccc tgaagaggcg
     5041 atatttcgta agccactttg agcgaagagg aaccaccacc aataaccaga ctgcgaactg
     5101 cattttcacc aacaaccaca atctgttttt tactgcttac agccacaggc aatgtttgtt
     5161 tatcgttttt gagcaacaca attccctgtt ctgctatttt gcgggcagct tcggaatgtt
     5221 caggacttac atacttgcca aaagggcgat cggccgacat agtggtacgg aagatcattc
     5281 gcaaaaggcg agtaactttt tggtcaagct cccggatgct atacttacca gatttcaaac
     5341 cctgtaaata tggatttgcg aggtaataag ctgaataagg agaagttcct ttggtggtta
     5401 acccatccgt ccatgtaccc atttcaagat cgagaccatt gtaaacagat tgttcggtat
     5461 tgt
//
LOCUS       DATDNM010000600         2698 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1355808, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000600 DATDNM010000000
VERSION     DATDNM010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1355808"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..642
                     /locus_tag="VI413_10200"
     CDS             <1..642
                     /locus_tag="VI413_10200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915035.1"
                     /translation="FIIIVIFVSVSVSTAFASTPDTITSVYKAGKFETRFQSKTKASN
                     EIAQNVADYLVSDFHNSPGHLFTWALNGLGLQNKDNELIIVFKSSDHDTKTGITHGVF
                     DIVVPGITTFSNIKVDAIVSKTKYTSGVVKVTANIIYSSLLLKNAVGTLLLVPQKNND
                     LTLITDVNINFGWFFNFFITQKRYKSIVEWRIKKFNENIIDECDRRQGIEAGN"
     gene            602..1327
                     /locus_tag="VI413_10205"
     CDS             602..1327
                     /locus_tag="VI413_10205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915036.1"
                     /translation="MNVTADKELKPEINNRLFQTFNFFINMKKYLFLIILCFSGALSS
                     YATSADSISTVYKNSEFVTYCHVSVNASDSISNEVINKFVYQMCYDLDGLFTWGLKGM
                     SLTNSKDELLKFDFKTTKFDKKTGILRGIGDVIVPGVTTFPNIYIDSRVTQKKYTSGR
                     RDVRLDLVTANPFIKKMAGVYTFIPKGKNKAGSYILETHIHFGWFFDIFITQYRYKKI
                     MEWRLKKLIRNMKEESEKREKLH"
     gene            1392..2477
                     /gene="prfA"
                     /locus_tag="VI413_10210"
     CDS             1392..2477
                     /gene="prfA"
                     /locus_tag="VI413_10210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005854384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEY6915037.1"
                     /translation="MAEKTLLEKLEGLQHKFEEISTLITDPAVIGDMKRYVKLNKEYR
                     ELERIMQAQEEYKTALSHLAEAKELMNIETDPEMREMAKAEIDEIEPKIPEMEENIKL
                     LLIPADPEDNKNAIVEIRGGTGGDEAAIFAGDLFRMYTKYCETKGWKMEVTNISEGTS
                     GGYKEVIFTVSGENVYGTMKYESGVHRVQRVPQTETQGRVHTSAATVAVLPEMEEFDY
                     ELKESDVRVDTFCSSGAGGQSVNTTYSAIRLVHIPTGTTVQCQDEKSQHKNKAKAMNE
                     LRSRLYAIEHQKYLDEIGSKRKTMVSTGDRSAKIRTYNYPQGRITDHRINFTIYNLSA
                     FMSGDIQGVIDQLIVAENAERLKESEL"
BASE COUNT          930 a          492 c          550 g          726 t
ORIGIN      
        1 tttatcatta ttgttatttt tgtttctgtt tctgtttcca cggcttttgc atcaactccc
       61 gatacaatta cgtccgttta taaagccggt aaatttgaaa cccgctttca aagcaaaaca
      121 aaagcctcta atgaaattgc acaaaatgta gctgattacc tggttagtga ttttcataac
      181 tcacccggac atctttttac gtgggcactc aatggcctgg ggttgcaaaa caaagataac
      241 gaattgatta ttgtttttaa atcatcggat cacgatacaa aaaccggcat aacacatgga
      301 gtttttgata ttgtggtgcc gggaatcaca accttcagta atatcaaagt agacgccatt
      361 gtttcaaaaa caaaatatac aagtggggtc gttaaagtaa ctgccaacat catatactca
      421 agtttattgc tgaaaaatgc agttggcacc ctgttgcttg ttcctcaaaa gaataatgat
      481 ttgacactca ttacggatgt aaatattaac tttggatggt tttttaattt tttcattact
      541 cagaaacgct ataaaagcat tgtggaatgg agaattaaaa aattcaacga aaatataatt
      601 gatgaatgtg accgcagaca aggaattgaa gccggaaatt aataatcgtt tgtttcagac
      661 tttcaatttc tttatcaaca tgaaaaaata tctttttctg attatacttt gtttttcggg
      721 ggcattatca tcgtatgcaa cgtcggcgga ttcaatctca acagtatata aaaacagtga
      781 atttgtaact tattgccatg taagcgtcaa tgcatccgac agtatatcca atgaggtaat
      841 aaacaaattc gtctaccaga tgtgttacga tctggatggg cttttcacct ggggattgaa
      901 aggaatgagc ctgactaaca gcaaagacga attactgaaa tttgacttta aaacaacgaa
      961 attcgataag aaaaccggca tcctcagagg aattggcgat gtaattgttc cgggagtcac
     1021 gacatttccg aatatttata ttgacagccg cgtgacgcaa aaaaaatata ccagcggtcg
     1081 cagggatgtc cggctcgatc tggtcactgc caatccgttt ataaaaaaaa tggcgggtgt
     1141 ttacacattt attccaaagg gaaaaaataa agcgggaagt tatattcttg aaactcatat
     1201 tcatttcggt tggtttttcg acattttcat tacccaatac cgttacaaaa aaataatgga
     1261 atggcgttta aagaaattaa tccgaaacat gaaagaagaa tcggaaaaaa gggaaaagct
     1321 tcattaaaca ataaaatagc agacaataaa acaattataa atttaatcga ttatacgatt
     1381 caatacatta tatggctgaa aaaacacttt tagaaaaatt agaaggatta caacataagt
     1441 tcgaagagat ttcgaccttg ataactgacc ccgccgtgat tggcgacatg aaacgctatg
     1501 taaaactcaa caaagagtat cgcgaactgg agcgcattat gcaggctcaa gaggaataca
     1561 aaacggcttt atcgcattta gccgaggcta aagaattgat gaatattgag acagacccgg
     1621 aaatgcgcga aatggccaag gcggaaattg acgagattga gcctaaaatt cctgaaatgg
     1681 aggaaaacat taaattgttg ttgattcctg ccgaccctga agataataaa aatgccattg
     1741 ttgaaatccg tggaggaaca ggtggtgacg aagctgccat ttttgccggc gatcttttcc
     1801 gcatgtacac aaaatactgt gaaacaaaag gttggaaaat ggaagtaacc aatataagcg
     1861 aaggtacttc cggaggttac aaagaggtta tttttaccgt ttctggcgaa aacgtgtacg
     1921 gtactatgaa atacgaatcg ggcgttcacc gcgtacaacg cgttccacag accgaaacgc
     1981 agggacgtgt acatacttcg gctgccactg ttgctgtact tcccgaaatg gaagaatttg
     2041 attatgaatt gaaagaatca gacgtacgcg tggatacttt ctgttcgtca ggagccggtg
     2101 gacagtctgt aaatacaact tactcggcca ttcggttggt acatattcca acaggaacaa
     2161 ccgtacaatg ccaggacgaa aaatcgcagc ataagaacaa ggcaaaagca atgaatgaac
     2221 ttcgttcacg tttgtacgct atcgaacatc aaaaatacct cgacgaaatt ggttcaaaac
     2281 gtaaaaccat ggtttctacc ggcgaccgct cagctaaaat ccgcacctac aattatccac
     2341 aaggacgtat caccgaccat cgcatcaact tcaccatcta caacctgtcg gcctttatga
     2401 gtggcgacat acaaggcgta attgatcagc tgattgtggc cgagaatgca gaacggttaa
     2461 aggaaagtga attgtaatgt gctgatgtgg taatgtggtg atgtgttgat ttaatgatgt
     2521 ggtaatgtgg taatgtggtg atctgataat gaggaatatt acaacaataa tgtaaaatgg
     2581 cgcacatccc aaaacaagaa atataaaaca aacaaagaaa cagatatgac aaaacaagaa
     2641 ttatttgaaa acatacaacg caagaaatca tttctttgcg tgggactgga cactgacg
//
LOCUS       DATDNM010000601         2665 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1676962, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000601 DATDNM010000000
VERSION     DATDNM010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2665
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1676962"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1572
                     /locus_tag="VI413_10215"
     CDS             <1..1572
                     /locus_tag="VI413_10215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915038.1"
                     /translation="KKEKINEYWNNLRFAMPNVKEGSIIEYRYKIRSEFLFQFRDWEF
                     QWKIPVIYSKYVVKMIPFYQYSWILQGASKFTSQKSYEDTGLEQQFGSITFKDMVYEY
                     VMTDLPAFTDEEYISSINDYIIKIDFQLSKVIQVNGTVQNIQTTWPEMIKDMIKSDGF
                     GQYALKCEKLAPKILDMTGLLAKSEREKFDSIMNYVKVNYKWNNMFGKYTSKTPKEFL
                     KDKFGNDADINLFAIGMLNAAGVKASPLLISTRQNGKIKYDYPFSHFFNYALILAEID
                     GKKVLADATEPFKLNDRIPEMCINDKGLIIQKDKVEWINIQSVAPTKMQKLVMMTLTD
                     STQNAVIETSATEYDALDYRKDFGEDKTLIQKKLTDKGYSVIDSTIIVKNQTNIIQPY
                     IFRYSIVNKPEKINGKIYISPFMSETLTENPLKQQERTYPIDMIYPVKRKYYADIQIP
                     DGYRVDFLPENDKIQNDQFELEYTIGTNDRKLLVSFAYSFKLPVYDPAEYMKIKYYFN
                     EIVKKGTDKIVLAKE"
     gene            complement(1640..>2665)
                     /locus_tag="VI413_10220"
     CDS             complement(1640..>2665)
                     /locus_tag="VI413_10220"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005781200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEY6915039.1"
                     /translation="ASLRGSVMIVGPLVARYGKASIPKPGGDKIGRRRLDTHFIGIQK
                     LGADFHYDPDAKRYEISAEKLTGCFMLLDEASVTGTANILMTAVMAEGITTIYNAACE
                     PYLQQLCKMLNAMGAKITGVGSNLLTIEGVKSLNGCTHRILPDMIEVGSFIGMAAMTA
                     SEIIIKNVAYDELGIIPDSFRRLGIKLEQQGDDIFIPQQDSYTIESFIDGSIMTIADA
                     PWPGLTPDLLSVFLVVAAKAKGSVLIHQKMFESRLFFVDKLIDMGAQIILCDPHRATV
                     IGQGNQLHLRASTMSSPDIRAGIALLIAALCAEGTSTIHNIDQIDRGYQDIDKRLNAL
                     GANIRRI"
BASE COUNT          880 a          432 c          539 g          814 t
ORIGIN      
        1 aaaaaagaaa agataaatga gtactggaac aacctaaggt ttgccatgcc gaatgtgaaa
       61 gaggggtcta taatagaata tcgttacaaa atcagatcag agtttttgtt tcagtttcgc
      121 gactgggaat ttcaatggaa aattccggtt atttacagta aatatgtagt aaaaatgatt
      181 cctttttatc aatactcgtg gatattgcag ggagccagta aatttacttc tcagaaatcc
      241 tatgaagaca ccggtttgga gcagcagttc ggaagtatta cttttaagga tatggtttat
      301 gagtatgtta tgacagattt accggcgttt actgatgaag aatatatttc atcgataaat
      361 gattatatca tcaaaataga ctttcaattg tcaaaagtaa ttcaggtaaa tggtacagtg
      421 caaaatatcc agacaacatg gccggaaatg attaaagata tgatcaaaag cgatggtttt
      481 ggacagtatg cacttaaatg tgagaagctt gctcccaaaa ttttagatat gactggtttg
      541 ttagcgaaat ctgagcgtga gaaatttgat tcaattatga attatgttaa ggtgaattat
      601 aaatggaata acatgtttgg taaatataca tcaaaaactc caaaagaatt cttgaaagat
      661 aaatttggaa atgatgctga tattaacttg tttgcaattg gcatgttgaa tgctgctggt
      721 gtaaaggcaa gtcctttgtt aataagcacc cgtcaaaacg ggaaaattaa gtatgattat
      781 ccttttagtc atttctttaa ttatgctttg attttagcgg aaatagatgg taaaaaggtt
      841 ttggcagatg ccactgaacc ttttaaattg aatgaccgaa taccagagat gtgtataaat
      901 gacaaagggt taataattca gaaagataaa gtagaatgga ttaatattca atctgttgct
      961 ccaacaaaaa tgcaaaagtt ggttatgatg acattgactg attcaactca gaatgccgtt
     1021 attgaaacgt cggctacaga atatgatgca ttggattaca gaaaggattt tggtgaagat
     1081 aagacattaa tacagaagaa actgactgat aaaggatatt ctgtgattga ttcaactatt
     1141 attgtaaaga atcaaactaa tattattcaa ccatatattt ttaggtatag tattgtgaat
     1201 aaacccgaaa agataaatgg aaaaatctat atttctccat ttatgagcga aactttgaca
     1261 gagaatccgt taaaacaaca ggaaagaaca tatcctattg acatgattta tccggtaaag
     1321 aggaagtatt atgcagatat tcaaattccg gatgggtata gggttgattt tcttccggaa
     1381 aatgataaaa tacaaaatga tcagtttgaa ctcgaatata ctattggtac aaatgataga
     1441 aaattattgg tttcatttgc atattcgttt aagttaccag tttatgatcc agctgaatat
     1501 atgaaaataa aatattattt caatgagatt gtaaaaaagg gaactgataa aatagtattg
     1561 gctaaagagt aggaatgctc taaaggaaaa cgcttcagaa taatttatcc tgaagcgttt
     1621 tttgggttag atccaaaaat tagattcttc taatatttgc tcccagtgca tttaatcgtt
     1681 tgtcaatgtc ctgataacca cggtcaattt ggtctatatt atgaatggtg cttgttcctt
     1741 ctgcacaaag agcagctata agcaatgcaa ttccggcacg aatatccggt gaactcatag
     1801 tggaagctcg tagatgtagt tggttgcctt gtccgataac ggttgcgcgg tgcggatcgc
     1861 aaagaataat ctgcgcaccc atatcaatca gtttatccac gaagaaaagt cggctttcga
     1921 acattttttg atgaataagc acactgcctt tagctttagc tgcaactacg aggaatacgc
     1981 tgagtaagtc gggtgtaagt cccggccaag gtgcgtcggc aatagtcata atagagccat
     2041 ctataaacga ttctatagtg tatgaatctt gttgtggaat gaaaatgtca tcgccttgtt
     2101 gctccagttt tatgcctaat cgacggaaac tgtcgggtat aattcccaat tcatcgtaag
     2161 ctacattttt aatgattatt tcagaagcag tcatagctgc catgccaata aaactgccga
     2221 cttcaatcat atccggtaaa atccggtgtg tacaaccgtt caatgatttt actccttcaa
     2281 tggtcagtaa attagagcca acacccgtta tttttgcccc catggcattc aacatcttgc
     2341 acagttgttg aaggtaaggc tcgcaagcgg cattgtaaat agtggtaatt ccttcagcca
     2401 ttacagctgt catcaggatg ttggcagttc cggttaccga agcttcgtcc aataacataa
     2461 aacaaccagt cagtttttct gcagatattt cgtatcgctt agcatcggga tcatagtgga
     2521 agtctgctcc aagtttttga atgccgataa agtgtgtgtc cagtcggcgg cgaccaattt
     2581 tatcaccacc cggttttggt atactggctt ttccgtagcg ggccaccaac gggcctacaa
     2641 tcattaccga cccacgaagt gatgc
//
LOCUS       DATDNM010000602         4522 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1890010, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000602 DATDNM010000000
VERSION     DATDNM010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4522
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1890010"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VI413_10225"
     CDS             <1..286
                     /locus_tag="VI413_10225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915040.1"
                     /translation="DERLGESVDGQVISRCHQCGKPADTHTNCANNDCHLLFIQCAEC
                     AAKYEGCCSEECQTIYHLPKDEQINLRSVYVDKYAGSKIFKSRLRPKLNN"
     gene            348..1337
                     /locus_tag="VI413_10230"
     CDS             348..1337
                     /locus_tag="VI413_10230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEY6915041.1"
                     /translation="MINFWKQINKPIIALAPMEDVTDTVFREVIRSVSSSEALNVLFT
                     EFTSTDGLCNEIGRKNVSSRLVVSDSEREWLNNTQTKLVAQIWGSDPDKFRQSAQLIS
                     ETRQFDGIDINMGCPVKKVVKSKSCSALINYPELAREIIVATKDGTHLPVSVKTRIGF
                     NTIITEKWIGNLLDENPAAITIHGRTQKMLSTGNAMWDEIGKAVQLRNERNSDTLILG
                     NGDVDSYSKAMEHIVAFGVDGVMVGTGVFKNPWMFNQTQTEISMEMRIDLLIKHITLY
                     DKTWGKTQNFNVLKRFFKIYLNGFDGAAHWRDKLMHTHSCDEALKVIKLLQNG"
     gene            complement(1334..2506)
                     /locus_tag="VI413_10235"
     CDS             complement(1334..2506)
                     /locus_tag="VI413_10235"
                     /inference="COORDINATES: protein motif:HMM:NF025059.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEY6915042.1"
                     /translation="MKTNRELFIEKLQSAIDNKELIKLSLTAPKDKSSDLKKIIITAV
                     ELKKGYCLNFVYRHKTKDITKNFEISEGIDLISKAIDTGFNNAELLATNNNINLYTLP
                     NGKIQLKSATATIVQAPTTFTHDRIKDKLIDLTDNIYLRELGITNAGFELRREMSDKY
                     RQINKYIELLAPNLSELSLRENFHVVDMGSGKGYLTFALYDYLTNKLKYAVNMTGVEF
                     REDLVNTCNAIAEKANFGQLKFEKGTIADTTLEKIDILIALHACDTATDDAIFRGIQS
                     DAALIVCAPCCHKQIRKAMNVTNELGNITKFGILKERQAEIITDTLRAMIMEAHGYKT
                     NVFEFISLEHTPKNVMIVGKKTTKSNPDKQQILNNIAAIKKLYGIEKHYLETLLGI"
     gene            complement(2634..3197)
                     /locus_tag="VI413_10240"
     CDS             complement(2634..3197)
                     /locus_tag="VI413_10240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEY6915043.1"
                     /translation="MRNNFNPWHQVVPHTENKDIVKGIIEIPKGNRAKYELDKESGLL
                     RLDRVLYSSMYYPHNYGFIPQSYCDDHDPLDILILSQIEVVPLCIVEAKVIGVMRMLD
                     NGEADDKIIAVAAGDPSVNHYNDISELPQYLISETMSFFEDYTKLENKTVVIEKFFDK
                     ETALQIMEDSFVMYKKHYGELHKWFFG"
     gene            complement(3284..3880)
                     /locus_tag="VI413_10245"
     CDS             complement(3284..3880)
                     /locus_tag="VI413_10245"
                     /inference="COORDINATES: protein motif:HMM:NF018525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6915044.1"
                     /translation="MESIKPTIYLIPRWAGTIHSDWYDWLHTVIKTKYQIEIIRLEMP
                     NWDQPDINESIVYMNEHVKDIDSQTYFIGHSVGCQAVLRFLNQQLKSKKNLHIGGFLF
                     VAGWFTVDNPWSTLKPWMDTSGINLSLIREQTNFRQVVLSDNDPFTANFNLNKSLWES
                     MLNAKTNIYNNRQHFNRLIEEDILAEVEKMIFHSKANK"
     gene            complement(3885..>4522)
                     /locus_tag="VI413_10250"
     CDS             complement(3885..>4522)
                     /locus_tag="VI413_10250"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEY6915045.1"
                     /translation="YTNRRPENSIVKNGNLLIIARKENFQKKQYTSARLSTDSKFNFK
                     YGKIEARIKTSTGKGLWPAFWLLGQNINDVGSPKCGEIDIMEHVNTENIIHSAMHWDN
                     NGLISLTKTTNCNVQQFHTYAVEWEKSSIKWLLDGKKYFEGKIKAKNQNTDEFQQPFY
                     IILNMAVGGTWPGKPDNTTVFPDTLCVDYVRVYKKTKIQSPKLSILSLLIP"
BASE COUNT         1244 a          864 c          959 g         1455 t
ORIGIN      
        1 tgatgaacgg ttgggcgagt cggttgacgg acaggtgatt tcgcggtgcc atcaatgcgg
       61 aaaacctgcc gacacgcaca ccaactgcgc caataacgat tgccatctgc tgtttattca
      121 gtgcgcggaa tgtgctgcta aatacgaagg gtgttgcagc gaagaatgtc aaactatcta
      181 tcaccttcct aaagatgagc aaattaatct tcgttccgtt tatgttgata agtatgccgg
      241 cagcaagatt tttaagagtc gcttgcgacc aaaactgaat aactagaaaa cctctctgct
      301 acgctcgtcc ccttaatagg ggagatataa aaaataaaaa ataataaatg attaatttct
      361 ggaaacaaat caataaaccc attattgcgt tagcacccat ggaagacgtt acagatacgg
      421 ttttcaggga agtcattcgt tcggtttcgt cgtctgaggc tttgaatgta ctgttcaccg
      481 aatttacctc caccgatgga ctttgcaacg aaattggccg caaaaatgta agcagccgat
      541 tggtagtgag tgattccgaa cgggaatggc tcaataatac acagactaaa ctggtagctc
      601 aaatctgggg ttccgaccct gacaaattcc gccaaagtgc tcaactgatt tcagaaacga
      661 ggcagttcga tggcatagat atcaatatgg gttgcccggt aaagaaagtt gtgaaatcta
      721 aaagttgctc ggctttaatc aattacccgg aactggcgcg ggagattatt gtcgccacca
      781 aagacggaac gcatttgccc gtgagcgtga aaacaaggat tggtttcaat acgattatta
      841 ctgaaaaatg gattggaaat ttgctcgatg aaaaccctgc agccataacc attcatggtc
      901 gcactcaaaa aatgctttcc accggaaatg ccatgtggga tgagattgga aaagctgtgc
      961 agttgagaaa tgaacgaaat tctgatacgt tgattcttgg aaatggcgat gtggacagtt
     1021 attctaaagc tatggagcac atcgtagcat tcggggtgga tggcgtcatg gttggaacgg
     1081 gcgtttttaa aaatccgtgg atgttcaatc aaacgcagac agaaatatcc atggaaatgc
     1141 gtattgattt attgataaag cacattacgc tctatgataa aacctgggga aaaacgcaga
     1201 atttcaatgt gttgaaacgt tttttcaaaa tctatctcaa tggttttgac ggtgctgccc
     1261 attggcgcga taaactaatg catacccaca gttgcgacga agcgctgaaa gtgataaagc
     1321 tgttgcaaaa tggttaaatt cccagcaatg tttccagata gtgtttctca atgccgtaca
     1381 atttttttat ggcggcaatg ttattcagga tttgttgttt atcaggattg gacttggtcg
     1441 tttttttgcc cactatcatt acgtttttgg gcgtatgctc cagcgaaatg aattcaaaaa
     1501 cattcgtttt gtagccgtga gcttccataa tcatggcgcg gagagtgtcg gtaattattt
     1561 ctgcctgacg ttctttcaat atgccgaatt tcgtaatgtt gcccagttcg ttggtcacgt
     1621 tcatggcttt gcggatttgc ttgtggcagc agggcgcaca aacaatcaac gctgcatccg
     1681 actgaatgcc acgaaaaatg gcgtcatcgg tggccgtgtc gcaggcatgc agggcaatca
     1741 ggatgtcaat cttttcgagg gttgtgtcgg caatggttcc tttttcaaat ttcaactggc
     1801 caaaattagc tttttcggca atggcgttgc aggtatttac caaatcctcc cgaaactcaa
     1861 cgccagtcat gttcacagcg tatttcaact tattcgtcag gtaatcgtat agcgcaaaag
     1921 tcaggtatcc tttgcccgaa cccatatcta ccacatggaa gttttcccga agcgaaagtt
     1981 cgcttaaatt gggcgccagc aattcgatgt atttgttgat ttggcggtat ttgtcgctca
     2041 tttcacgacg aagttcaaaa ccggcattgg taatgcccag ttcccgcagg tagatattgt
     2101 ctgtcagatc aatcagtttg tctttgattc ggtcgtgggt gaaagtggta ggtgcctgaa
     2161 cgattgttgc ggttgccgat ttcaattgaa ttttgccgtt aggcaaggtg tatagattga
     2221 tattgttgtt tgttgccaac agttcggcat tattgaaacc ggtatcaatg gcttttgaaa
     2281 tcaaatcaat gccttcgcta atttcaaagt ttttggtaat atcctttgtt ttgtggcggt
     2341 acacaaaatt caaacagtag ccttttttca gttctacagc tgtgataatg attttcttca
     2401 ggtcggatga cttgtctttg ggagccgtaa gcgacaattt aatcaactct ttattgtcaa
     2461 tagctgattg aagtttttca atgaataatt ctctgtttgt tttcacgctg aatctgaatt
     2521 tgaaattggg tacaaagata gctctttcgg acggatatga tggaatataa aaaaacaatg
     2581 agaatctccg gttgtaagat tctcattgat aaaatgttgt gtaaaggttg aaatcaacca
     2641 aaaaaccatt tgtgtaattc gccgtaatgt tttttataca tgacaaagct gtcttccata
     2701 atttgtagcg ctgtttcctt gtcgaagaat ttttcgatca ccaccgtttt gttctccagt
     2761 ttggtgtaat cttcgaaaaa gctcatggtt tcagaaatca ggtattgcgg aagttccgaa
     2821 atgtcgttgt agtggtttac gctggggtcg ccggcagcaa cggcaataat tttatcatcg
     2881 gcctcgccgt tatcaagcat tcgcattacg ccaattactt ttgcctcaac aatgcaaagc
     2941 ggcaccactt ctatttgcga gagaataaga atatccagcg gatcatggtc gtcacagtaa
     3001 ctttgtggaa taaaaccata gttgtgagga taatacatgg aagagtaaag tacgcggtct
     3061 aaccgaagca atccactttc tttatccaac tcatatttgg cacggttacc ttttggaatt
     3121 tcgataatac cttttacaat gtccttattt tcggtgtgtg gcactacctg gtgccaggga
     3181 ttgaaattat ttctcatcta tctttttgtc ttgttttatc aggctgcaaa agtaaataat
     3241 aaaacttact tacagaatga aagtggaatt tatttttttg aatttattta tttgcttttg
     3301 agtggaaaat cattttctct acctcagcta atatatcttc ttcaattaac ctgttaaagt
     3361 gttgcctgtt gttataaatg tttgtttttg cattcaacat gctttcccat agtgatttat
     3421 taagattgaa gtttgcagta aaaggatcat tgtcggatag aacaacctgc ctgaaattag
     3481 tttgctccct aataagtgac agattaatac ccgaagtatc catccatggt ttaagcgtgc
     3541 tccatggatt gtctaccgta aaccaacctg caacaaataa aaagccacca atgtgtaaat
     3601 tctttttgga cttcagttgt tggttcagaa atcgtaaaac agcctgacaa ccaacgctgt
     3661 gtcctatgaa atatgtctgg ctgtcaatat ctttcacatg ctcattcatg taaacaattg
     3721 attcatttat atccggttga tcccagtttg gcatttcgag tcggataatt tcaatctgat
     3781 acttcgtttt tattacagta tgcagccagt cgtaccagtc ggagtgtatg gtgccagccc
     3841 agcgtggaat taaataaatt gttggtttta tactctccat atattcaggg aatcaacaag
     3901 cttagaattg atagtttagg gctttggatt tttgttttct tataaaccct gacataatca
     3961 acgcacagtg tatctggaaa tacagtggta ttatccggtt ttcccggcca tgtgccacct
     4021 acagccatat tcagaataat ataaaaaggt tgttggaatt cgtcggtgtt ttgatttttt
     4081 gcttttatct ttccttcaaa atattttttc ccgtccaaaa gccacttaat actgcttttc
     4141 tcccattcta cagcataggt atgaaactgt tgaacattgc agttagttgt tttggtgagg
     4201 cttatcagtc cgttattgtc ccaatgcatg gcgctgtgaa ttatattttc ggtattcaca
     4261 tgttccataa tgtcaatttc gccacattta ggacttccaa cgtcatttat attttggccc
     4321 aatagccaaa aagcaggcca taatcctttg ccggttgatg tttttatacg ggcttctatt
     4381 ttcccatatt taaaattgaa tttgctgtca gtggataatc gggctgaagt gtattgtttt
     4441 ttttgaaaat tttcttttcg tgctatgata agtaaattgc cgttttttac gatactgttt
     4501 tcgggtcggc ggttagtata at
//
LOCUS       DATDNM010000603         3124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1677009, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000603 DATDNM010000000
VERSION     DATDNM010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1677009"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..786
                     /locus_tag="VI413_10255"
     CDS             58..786
                     /locus_tag="VI413_10255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915046.1"
                     /translation="MRTRLLIAVLLLMTVVTSAKKKKEVFAEASYGVNYTGTTLTIQF
                     EKGKEHNHPLFAIWLADENGKFIQTLYVSESIGKGVFKRASRKTGHWLAGEIQRPASL
                     PYWAHQRGIKNEFGTYLPTPKHPEVDAYTGATPTTSFILHLKTMKQLAGKYKVMLELN
                     QTWDWNEFWTNDMYPNEKEYRTSCQPALVYEADIDTNNPSAEITLKPIGHSHYSGADG
                     SLTADLSTITTALKIAKKITVKID"
     gene            complement(862..2892)
                     /locus_tag="VI413_10260"
     CDS             complement(862..2892)
                     /locus_tag="VI413_10260"
                     /inference="COORDINATES: protein motif:HMM:NF019317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDIG domain-containing metalloprotein"
                     /protein_id="HEY6915047.1"
                     /translation="MKLKFTPIQLQHISRIGLFLCVVAIIVELFPKENKFKYQFEIGK
                     PWTYELITAAFDFPIYKSDQQVAKEREEVLKDYTPFFKLDTTVNALQVNKMFADWQKN
                     HGSQPDFQAIIKNKFKAIYSVGIISIEDYNKLLEGKRNYISCISPNRVTRTVSINEVY
                     TPKTAYEEIIKNAPEALKSYDLNLYLVENLKYDSTTSVLARTDILKNLSLTSGMVQTG
                     ERIIDRGEIVTPVTYQVLHSLKIESEKRSATIHKSSIVAIGEVIMILGLMTLLFLYIY
                     LFRPRIYDSFSNLIFVLLLILMMVSLASLTVRNNALNYYMVPFALIPIIIRVFFDSRT
                     ALFVHIISMLMISFMVDNSFQFILLQITIGMAAVSSLKDMSQRSQLAQTALYIFLSYM
                     LMYLAFEFISEGDVERINWVNIAYFAISSVLLLLAYVLIYFFEKIFNLVSSVTLVELT
                     NINSDLMMEFSERAPGTFQHSLQVSNLATEAAKKINANSLLVRTGALYHDIGKMKHPE
                     YFIENQMGGKNPLIDFDFEVASRIVIDHVTDGVEIARKNHLPQQIINFIGTHHGFCKT
                     KYFYNSYILANPDKKPNDAVFTYPGPLPNNKETAILMMADAVEARSRSLGVYTEESIN
                     EMVETMIDGQIADGQFKEAPISFLDVETVKSVFKEKLKSFYHSRIVYPELKK"
BASE COUNT          994 a          668 c          580 g          882 t
ORIGIN      
        1 attattatta agatataaac gactgcatcc tgcaaaaagg atttaaaata caaatgtatg
       61 agaacaagat tattaatagc agttttactg ttaatgactg tagttacctc agccaaaaag
      121 aaaaaagaag tattcgctga agcaagttat ggcgtcaatt acaccggaac cacgctcacc
      181 attcagtttg aaaaagggaa agagcacaat catccgctgt ttgccatttg gttggccgac
      241 gaaaacggga agtttataca aacgctctat gtctccgaaa gcattggcaa aggggtattc
      301 aaacgcgcca gccgcaaaac aggccactgg ttggccggag aaattcagcg tcctgcttcc
      361 ctaccctact gggcacatca acgcggaata aaaaacgagt ttggaactta tttgcctaca
      421 cctaaacatc ctgaggtgga tgcttacacc ggagccacac caacaacttc gtttattctt
      481 catctaaaaa caatgaaaca gttggcgggc aaatataaag tcatgctgga actcaaccaa
      541 acctgggact ggaacgagtt ttggacaaac gacatgtatc ccaacgaaaa agaataccga
      601 acatcctgtc agccggcact ggtttatgaa gcggatatcg acacaaataa tccttctgcg
      661 gaaataaccc tgaaacctat cggacatagc cattattcgg gcgcagatgg tagtttaacc
      721 gccgatttaa gtacgatcac tacggctttg aaaattgcga aaaagattac tgtgaagatt
      781 gattaggtaa ttggtgataa aaaaacgcta gttttgcaga gcagttctgc aaaactagcg
      841 ttttttttta tccgttagat tttatttctt caactccgga tacacaatcc gcgagtggta
      901 aaagctcttc agtttctctt tgaaaaccga cttcacggtt tcaacatcca aaaacgatat
      961 cggagcttct ttaaattgtc catccgcaat ttgtccgtca atcattgtct ccaccatctc
     1021 attaatactt tcctcggtgt aaactcccag acttcttgaa cgtgcctcca cagcatcggc
     1081 catcataagt attgcagttt ctttgttgtt cggaagcggc cctggatatg taaacacagc
     1141 gtcattcggc tttttatccg gattagccaa aatataggaa ttatagaaat actttgtttt
     1201 gcaaaaccca tggtgtgtac caataaaatt gataatctgc tgcggcaaat ggttcttccg
     1261 ggcaatttca acaccatcgg taacatggtc aataacaatt ctggaagcta cctcaaagtc
     1321 gaaatctatc agcggatttt tgcctcccat ctggttttca ataaaatatt ccggatgttt
     1381 catctttccg atatcgtgat acaacgcgcc ggtacgcaca agtaaactat tggcattgat
     1441 cttttttgca gcctccgttg ccaggttcga cacctgcaac gaatgctgga atgtacctgg
     1501 cgcacgctcg gaaaactcca tcatcaggtc gctgtttata ttcgtcagtt ccaccagtgt
     1561 tacactcgaa accagattaa atatcttttc gaagaaatag attaatacat aagccagcaa
     1621 caaaagcaca ctacttatgg caaaataagc aatgttcacc cagttaatac gctccacatc
     1681 gccctccgaa ataaactcaa aagccagata cattagcata taactcaaaa aaatgtataa
     1741 tgccgtttga gccagctgtg agcgttggga catatccttc aaactggaaa ccgccgccat
     1801 gccaatcgtt atttgcaaca gtataaactg aaacgagtta tcaaccatga atgaaatcat
     1861 cagcatgctg ataatatgca caaaaagcgc cgttcgtgaa tcgaaaaata cgcggataat
     1921 aatcggtatc agtgcgaacg gaaccatgta gtagtttaaa gcattgtttc tgacggttag
     1981 cgaggctagg ctcaccatca tcaaaatcag gagtaataca aaaatcagat tgctaaaact
     2041 atcgtaaatg cgcggacgga aaagataaat atacaaaaag agcaacgtca taaggccaag
     2101 gatcattatc acctcaccaa tggcaactat cgacgattta tgaatggtag cactacgctt
     2161 ttccgattca attttgagag aatgaagtac ctgataagtt accggggtca caatctcacc
     2221 acggtcaata atccgctccc ctgtctgcac catacccgac gtcaacgaca ggtttttcag
     2281 aatatcggtt cttgcaagca cagatgtagt actgtcatat ttcaggtttt cgaccagata
     2341 taaattcaaa tcatacgatt tcaatgcctc tggagcattt ttgataattt cttcgtaagc
     2401 tgttttaggc gtatacactt cattgataga aacagtacgc gtcacacggt tgggcgaaat
     2461 acaagaaata tagttccgct tgccttccag taacttatta tagtcctcaa tagaaattat
     2521 tccgaccgag taaatcgctt tgaacttgtt ttttataata gcctgaaaat ctggttggct
     2581 tccgtgattc ttttgccaat cggcaaacat cttattaacc tgcaaagcat taactgttgt
     2641 atccagtttg aaaaaaggtg tataatcttt caaaacttcc tcacgttctt tggcaacctg
     2701 ttggtcactt ttataaatcg gaaaatcgaa agctgcagta attagttcat atgtccaggg
     2761 ttttccaatt tcaaactggt atttaaactt gttttctttg ggaaaaagct caacaataat
     2821 agccacaaca cacagaaaaa ggccaattct cgatatgtgc tgcaactgta tgggagtaaa
     2881 ttttaatttc atgtgtaaat aattattttg gggtcatatg gaactcgcat gacggatttt
     2941 catctttttt gctgaacata tgcgttcatg ctcgtttcat atctcaattt tatgaagtat
     3001 aacaacagac gtttactaat agtgcggaaa attacgaaaa aaatagctaa cagaagcgtt
     3061 atcaacaaac tttccttatt tttgtcaata aaaggacctt tttcacaatc ctgattttgg
     3121 aatg
//
LOCUS       DATDNM010000604         7448 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1997595, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000604 DATDNM010000000
VERSION     DATDNM010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7448
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1997595"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..487)
                     /gene="ssb"
                     /locus_tag="VI413_10265"
     CDS             complement(65..487)
                     /gene="ssb"
                     /locus_tag="VI413_10265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEY6915048.1"
                     /translation="MSVNKVILVGNVGKDPEVRYLDKNVAVANFTLATTERGYTMQNG
                     TQVPDRTEWHNIVAWRGLAELAEKYIRKGGQLYIEGKIQTRMWEKEGIKRYTTEIYAD
                     TIQLLGKKPESTEALSTVTAPPADSIQAPPPAEDDLPF"
     gene            complement(692..997)
                     /locus_tag="VI413_10270"
     CDS             complement(692..997)
                     /locus_tag="VI413_10270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dabb family protein"
                     /protein_id="HEY6915049.1"
                     /translation="MIKHIVFFGLADNAEGKSKMENAEIIKFELENLINFIPEIKKIE
                     VGINCPNAPKTNFDIALYSEFESLETLDIYQEHPEHKKVAAYIGKVRTSRAAVDYEV"
     gene            complement(1051..1443)
                     /locus_tag="VI413_10275"
     CDS             complement(1051..1443)
                     /locus_tag="VI413_10275"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915050.1"
                     /translation="MKQLYTLLFLFVSITCLFAQNTAKNEPRATGQTTVIRIDGSTQN
                     AWIKGDNDAATTVNTTTSGSETVSFSSTADGIFITILSGTNKIKLFALTGQLLFNGDL
                     TQGRFLIQARKGIYFLKINNKSFKVICK"
     gene            complement(1606..3183)
                     /gene="nadB"
                     /locus_tag="VI413_10280"
     CDS             complement(1606..3183)
                     /gene="nadB"
                     /locus_tag="VI413_10280"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008734 - L-aspartate oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HEY6915051.1"
                     /translation="MTRKFDFLVIGGGIAGISFALKAAKHGKVALLCKTTLDESNTTY
                     AQGGIASVMYAPDSFEKHIEDTLIAGDGHCNLEAVEKVIKEAPGQIEELINWGVDFDK
                     DENGLFNLHREGGHSEHRILHHKDNTGYEIQQSLIRQVKSHPEIEVFEHYFAIEILTQ
                     HHLGQIVTHHTPDIECYGAYVLNQSSNHIHTFLSKVTLLATGGIGNVYSTTTNPEIAT
                     GDGIAMVHRARGIIKDMEFVQFHPTGLYQPGERPTYLITEAIRGYGAVLRCKDGREFM
                     QKYDERGSLAPRDIVARAIDNEMKIRGHEFVYLDVTHKNAEETKEHFPNIYKKCLEEG
                     IDITKDYIPVSPIQHYLCGGIVVDLNGRSSINRLYAAGECSCTGLHGANRLASNSLLE
                     AIVYADAAVKDAVKRIDKLAYNESIPGWNDEGTSLPEEMVLITQSFREVEQIMSTYVG
                     IVRSNLRLRRAMNRLEILYRETENLFEKSVVSREICELRNVISVAYLIIKQALLRKES
                     RGLHYTVDYPERMKNES"
     gene            complement(3355..4488)
                     /locus_tag="VI413_10285"
     CDS             complement(3355..4488)
                     /locus_tag="VI413_10285"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009130187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6915052.1"
                     /translation="MSIIVREVTTKKELKKFIRFGINLYKDCEFAAPPLLMDDLLNLS
                     KGKNPALDFCEVAFFVALRNDKIVGRIAGIINPVSNKTWNQKHARFGWVDFIDDLKVS
                     KALFDTATTWAREKGMTAIHGPLGFTDFDHEGTLIEGYDKLGTLATIYNYPYYPKHIE
                     HHGFVKDIDYKEYLITVPDEYPEKYFRIADIVKQKYNLTSKYFKTRKELIDNYALKIF
                     DLLNLCYKDLYGFTKLNEKQIEFYIKLYFSFFRLDTVSIVVNEKDDVVALGIAMPSFT
                     KALQKAKGDLFPFGWFYMLRALKKNDVVDLYLMAVHPDYQNKGVNSIMFADIMPNSTK
                     NGYKFAESNPELETNTKMSSQWGSFEHVNHKRRRVYVKKIQHN"
     gene            complement(4710..>7448)
                     /locus_tag="VI413_10290"
     CDS             complement(4710..>7448)
                     /locus_tag="VI413_10290"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6915053.1"
                     /translation="NDFQGINIDFENFPLAIKPYLIQFSKDLYETLHPAGYLTTIDLN
                     PTDDQVWYKELAPYYDFIFSMAYNEHYPDGEPGSISSLMSVEKALDDAMKDIPSEKVV
                     LCVAGYGFDWPKKGTAKKVTYQNLISLAKEYEEDVYFNLSQSDIAMCYTDDEGMEHEA
                     HCNDAAGTFNILRTAEDYSAAGVALWYLGSEDQRIWDFYTANLNEDYLKKHPYNYKKL
                     EHIAAIDAVNYDGKGEILEMIHIPDHGLTKFDFDLTDQLITNEQYKSLPSSYMLKRYG
                     AENPKKIALTFDDGPNSEFTPKILDILKQKKVPATFFVTGINIENNIPLIRRIYREGH
                     EIGNHTFTHPNLEVTSDSRERVELRSTRLLLESILGYSTLLFRPPYNTDAEPKNLFQI
                     KSLAVAHDEGFISVTSYIDPNDWQEDVSADTIVARAKASLSLSPDKRGNIVLLHDAGG
                     ERSQTIIALPQIIDYYEKQGYQFVTVSALMGKTRDQVMPVVQSKFKITETLDLLFFSL
                     TYAWDHFLHGFFIVAILLIIFRLLAIAFLAIFQRIKEKRKKTAEIIYTPKVSIIVPAY
                     NEELNAERTVHNLLKANYSDLEVIFVDDGSKDDTYNKVKTTFENNPKVTVLTKPNGGK
                     AAALNFGILQAKGEILVCIDADTVLPSDAIPKMIPYFADPEVGAVAGNVRVGNTLNLL
                     TNWQSIEYTTSQNFDRRAFDAVNAILVVPGAIGAFRKTAMEEIDGFTTDTLAEDCDLT
                     LRLLIAGYRIRTCNEALALTEAPETLNMFLKQRSRWTFGMMQSFWKHRDMLFTSKKLN
                     ISWIALPNLLIFNFIIPFFSPIVDILFIAGLFTYAAPEYIFFYLLYYVIDCLIGFMAY
                     SFDNQKFTFKTALFLFIQRFIYRQLLFYVLFKSYKKAIKGELVSWGVLKRTGNVVE"
BASE COUNT         2133 a         1424 c         1386 g         2505 t
ORIGIN      
        1 tacgatgaac ttaaaaaata ataagccgtt tcagtgtttt gaagcggctt atttgttgtt
       61 tatatcaaaa tggaagatca tcttcggcag gaggtggtgc ctgaatggaa tcggctggtg
      121 gtgcggttac tgtactgagt gcttctgtgc tttcaggttt tttgcccagc aattgaattg
      181 tgtccgcata aatctcggtg gtgtaacgtt tgattccttc tttttcccac atgcgggttt
      241 gaatttttcc ttcaatatac agttgccctc ctttacggat atatttctcg gctaattcag
      301 caaggcctct ccaggcaacg atattgtgcc attcggtacg atcgggaacc tgagtaccat
      361 tttgcatggt gtagcctctt tctgttgttg ctaatgtaaa gtttgcaaca gccacgtttt
      421 tgtctaaata acgaacttca ggatcttttc caacattccc gactaggata actttgttta
      481 cagacataat tcttagattt ttttgagggg ttaatagtta atgttaactc gctgtaaaaa
      541 taaatataat ttctgtatta taaacaaaaa aggccaatta tttttaatca tcttaaaaat
      601 aattgaccaa atattattcg taataattta atgctcacat aatcagcaga ttgtaattgg
      661 catcattttt tcggttttaa aaaatatgaa attatacttc gtaatcgact gctgcccttg
      721 aagttctgac tttgccaatg taagctgcta cttttttatg ctctggatgc tcctgataaa
      781 tgtcaagtgt ttccaagctc tcaaattccg agtataaagc aatatcaaaa tttgtttttg
      841 gtgcattcgg acaattaatt ccaacttcaa ttttttttat ttcaggaata aagttaatca
      901 gattctccag ttcgaatttg ataatttcag cgttttccat tttcgatttc ccttcggcat
      961 tatctgctaa accgaaaaaa acaatgtgtt tgatcataaa aatatgtttg tgttaaatgt
     1021 aaatcggaaa attaaatggc tttcagataa ttatttacag attaccttaa agcttttgtt
     1081 gtttattttt agaaagtaaa taccttttcg tgcttgaatt aaaaagcgtc cctgggtcag
     1141 gtctccgttg aaaagcaact gtccggtaag tgcaaataat ttgattttat ttgttccgct
     1201 tagtattgtt ataaatatcc catcggctgt tgaactgaaa ctaactgttt cactgcctga
     1261 tgttgttgtg ttaactgttg tcgctgcgtc attatcgcct tttatccatg cattttgcgt
     1321 agaaccatct attcgtataa cagtggtctg accggtagct cgaggttcat tttttgctgt
     1381 gttctgagca aacaggcagg taattgacac aaacaaaaac agaagcgtat ataattgttt
     1441 catctgtttg ttttttttag attcactatt gtaatagagt tatggtttca atgcttcaaa
     1501 gttacagcat ttctcgggat taaactcata aaattaattg agtttctact atcgttcact
     1561 atttttcaat tccatttgag ctgttaattg gctgccttgc catatttatg actcattttt
     1621 cattctctca ggataatcaa ctgtataatg taatccacga ctttctttac gtaaaagtgc
     1681 ttgctttata attaaatatg caacacttat aacattcctt agttcacaga tttctctgga
     1741 aacaaccgat ttttcgaata aattttctgt ttcgcgataa agtatttcca atcggttcat
     1801 agctcgtcgt aaacgaagat ttgacctgac gattccgacg taagtactca taatctgttc
     1861 tacttcccga aagctctgcg taatcaatac catttcttcc ggtaaggaag taccttcatc
     1921 attccaaccc ggaatcgatt cattatatgc caacttatca attcttttta cagcatcttt
     1981 tactgctgca tcagcatata ctatggcttc gagcaaagaa tttgaggcta atctgttagc
     2041 accatgcaag cctgtacacg aacattcacc ggcagcataa agtctgttga tggatgaccg
     2101 tccattaaga tcaacaacta tgccaccgca taaataatgt tgaatgggtg agacaggaat
     2161 ataatctttt gtgatatcaa ttccttcttc taaacatttc ttatagatat tggggaagtg
     2221 ttctttggtt tcttctgcat ttttatgagt tacatccagg taaacaaatt cgtgcccacg
     2281 aattttcatt tcgttgtcta tagcccgtgc cacaatatcg cggggagcta gcgaaccacg
     2341 ttcatcatat ttttgcataa actctctgcc atctttgcag cgtaatacag ctccatagcc
     2401 acggattgct tcagtaatca gataggtagg tcgttcgcct ggttgatata gaccggtagg
     2461 gtggaactgg acaaattcca tgtctttgat aattccacgg gctcgatgca ccatggcaat
     2521 tccatcgcca gttgctattt ctgggttggt ggtagttgaa tatacgtttc caatgccacc
     2581 tgtggcaagc aatgtaactt tagataaaaa agtgtggata tgatttgaac tttggtttaa
     2641 aacataagca ccgtaacatt caatatctgg ggtgtgatgg gttacaattt gacctaaatg
     2701 atgttgagtg agaatttcaa tggcaaaata atgttcaaaa acttcaattt ctggatgaga
     2761 ttttacctga cgaattaaac tttgttgaat ttcatatccg gtattgtcct tgtggtgtaa
     2821 aattcggtgt tccgaatgtc ccccttcgcg atgaaggttg aaaagcccat tctcgtcttt
     2881 gtcgaagtca actccccagt tgattaattc ctcgatttgt ccgggcgctt cctttatgac
     2941 tttttctaca gcctcaaggt tgcaatgccc gtctcctgca atcaaagtgt cttcaatgtg
     3001 tttctcaaaa ctatcgggtg cgtacattac cgacgctatc cctccttgcg cgtaagttgt
     3061 gttggattca tccagtgtgg ttttacacag gagggcaact ttcccgtgtt tagctgcctt
     3121 cagggcaaag cttatacctg ctatgccgcc accaatgact aaaaaatcaa atttgcgtgt
     3181 cattttttga aatgttttta gaatcaggaa tcatgactaa agaaacagac agcttaaaaa
     3241 gaagtcttgt caattaaccg atagttagtt taatgaataa gcatccaact aacaaactac
     3301 cggaaagata tgttgaaaaa atttgagcag tagttttatt actgctcaat taatttaatt
     3361 atgctgaatt ttttttacat aaacccgtct tctcttatga tttacatgct caaaacttcc
     3421 ccattgggat gacattttgg tatttgtttc caattccggg tttgattcgg caaacttgta
     3481 tccgtttttg gtactgttcg gcattatatc tgcaaacatg atggaattta cacctttatt
     3541 ttgataatca ggatgtacgg ccatcaggta aagatcaacc acatcattct tttttaaggc
     3601 tcgtaacata taaaaccaac caaatggaaa cagatcacct tttgctttct gcaaagcttt
     3661 tgtgaaactt ggcatggcaa ttcccaaagc gactacgtca tctttttcgt tcactactat
     3721 ggaaactgta tcaagtcgga aaaagctgaa atatagtttg atataaaatt caatttgctt
     3781 ttcgttgagt tttgtaaacc catacagatc tttataacac aaattgagca aatcgaaaat
     3841 ttttaatgcg taattgtcga ttagttcttt tcgtgttttg aaatattttg aagtcagatt
     3901 gtatttctgt tttacaatat ctgctatccg gaaatacttt tcaggatact catcgggtac
     3961 tgtaataaga tattctttat agtcaatatc ctttacaaat ccatgatgct caatgtgttt
     4021 tggataatat gggtagttgt aaattgttgc cagcgtacca agtttgtcat aaccttcaat
     4081 gagtgttccc tcgtggtcga aatctgtaaa tccaagcggt ccgtgaatgg cagtcatgcc
     4141 tttttctctt gcccaggttg tggctgtgtc aaacagagct tttgaaactt tcaggtcatc
     4201 aataaaatct acccaaccaa agcgggcgtg cttttgattc catgttttgt ttgaaacggg
     4261 attgataatt cctgcaattc gacctacaat tttgtcgttt ctcagcgcta caaaaaatgc
     4321 cacttcacag aaatccaggg ctggattctt tcctttgctc agattcaata agtcatccat
     4381 taataatggt ggggcagcaa attcacagtc tttgtaaaga ttaattccaa atcggatgaa
     4441 tttttttaat tcttttttcg ttgtaacctc tcgaactatt atggacataa attattgact
     4501 atttaaatat ctggtcagaa aaaacatgta aaataaagca aaataatcgc aactgacaac
     4561 gatttaagcc tgtttttgat ttttttgaat gtaatgtctt atcagatagt gtgtttctta
     4621 attacttgtc ttttgagatt agtagtcctg aatgtatttt attgaaataa atgtgcaaaa
     4681 atatacatct aacctccatt ttcattgggt tattcaacaa cattgcctgt tcgtttcaat
     4741 actccccagc tcactaattc gcctttgatt gcttttttat atgatttaaa cagtacgtaa
     4801 aataataact gacgataaat aaagcgttgt ataaaaagga ataaggcagt tttaaacgtg
     4861 aatttttgat tgtcaaagct ataagccata aatccaatta aacagtcaat cacataatag
     4921 agcaaataga agaaaatgta ttccggggca gcataggtaa agagtccggc aataaataat
     4981 atatctacta ttggtgagaa aaatgggata ataaagttga aaatcaacaa gtttggcaga
     5041 gcaatccaac tgatattcag tttttttgat gtgaatagca tatcacgatg tttccagaaa
     5101 ctttgcatca ttccaaatgt ccaacgtgag cgttgtttca aaaacatatt caaagtttcc
     5161 ggtgcctcgg taagtgccaa tgcttcattg caagtccgga ttctgtatcc tgctataagc
     5221 aaacgtagag tcaggtcgca atcttcggcc aatgtgtcgg ttgtaaaacc gtcaatttct
     5281 tccatagccg ttttgcggaa ggcgccaatt gcccccggaa caaccaaaat agcattcacc
     5341 gcatcgaacg cacgacgatc aaaattctga cttgtggtgt attcgataga ttgccagttt
     5401 gttagcaaat taagtgtgtt tccaacgcgt acatttcctg ctactgcacc cacttctggg
     5461 tcggcaaaat aaggtatcat tttcggaata gcatccgaag gcaaaacagt gtcggcatca
     5521 atgcatacca gaatttcgcc cttggcttgc aggatgccaa aattcaaggc tgcagcttta
     5581 ccaccattcg gtttggtaag cacagtaact ttcggattat tttcaaaagt tgtttttact
     5641 ttgttgtagg tgtcatcttt agacccatca tccacaaaaa tcacttccaa atccgagtaa
     5701 ttagctttca gcaagttatg tacggttctt tccgcattca gttcctcgtt atacgccgga
     5761 acaatgatgc tgactttagg cgtatagata atttccgctg tctttttcct tttttctttg
     5821 attcgctgga aaatagctaa aaaggcaatt gccagtaatc tgaaaataat cagtaaaata
     5881 gctacgataa agaacccatg cagaaagtgg tcccaagcat aagtaagcga gaaaaacagc
     5941 aagtcaagtg tctctgtaat tttaaatttg ctttgaacca ccggcataac ctggtcgcgc
     6001 gttttcccca ttaacgccga aacggttacg aattgataac cttgtttttc ataataatca
     6061 attatctgtg gcaatgcaat aatggtctgc gaacgctcac caccagcatc gtgcagcaat
     6121 acaatatttc ctcttttgtc aggacttaat gataaacttg ctttagctct tgcaacaata
     6181 gtatcggcac taacatcttc ctgccaatca ttaggatcaa tataagatgt aacgctgata
     6241 aatccttcgt cgtgagcaac agctaatgat tttatctgga aaagattctt gggttcagca
     6301 tccgtattat atggcggacg gaaaagaaga gtagaataac caagaatgct ttccagtaac
     6361 aaacgagttg aacggagctc tacgcgttct ctgctgtctg aagttacttc caggtttgga
     6421 tgtgtaaatg tgtggtttcc aatttcatga ccttctctgt aaatgcggcg gataagtgga
     6481 atgttattct caatatttat tccggtcaca aaaaatgtag caggaacttt tttctgttta
     6541 agaatatcca gaattttggg tgtaaattca ctattaggcc catcgtcaaa agtaagtgca
     6601 attttcttcg ggttctcggc gccgtatcgt ttaagcatgt aagaacttgg gagcgatttg
     6661 tattgctcat ttgtaataag ctgatcggtc aggtcaaaat caaactttgt taatccatga
     6721 tccgggatat gtatcatttc gaggatttct ccttttccat cataattgac cgcatcgatg
     6781 gcagcaatgt gttccagttt cttgtaatta tacggatgtt tttttaaata atcctcgttc
     6841 agatttgcgg tatagaaatc ccagatacgt tggtcttccg aacccaggta ccaaagggca
     6901 actccggctg cactataatc ttcggctgtg cggagtatgt tgaatgtgcc tgcagcatcg
     6961 ttgcaatgcg cttcatgttc cattccctca tcatcggtgt agcacatggc tatatccgac
     7021 tggctcaggt tgaaatatac atcttcttca tattctttgg ccagtgaaat taaattttga
     7081 taagtcactt tttttgcagt acctttttta ggccaatcga aaccatatcc ggctacgcaa
     7141 agcacaacct tttcagatgg gatgtctttc atggcatcgt caagtgcttt ttctacagac
     7201 atgagcgaag aaatacttcc gggttcgcca tcgggataat gttcgttgta ggccatcgag
     7261 aatatgaaat cgtaatatgg agcaagttct ttgtaccaaa cctggtcatc ggtagggttt
     7321 aaatcaatgg tagtgagata tccggccgga tgaagagtct cgtataagtc tttggaaaac
     7381 tggattaaat agggttttat tgccagtggg aaattttcaa agtcaatgtt gatgccctgg
     7441 aaatcatt
//
LOCUS       DATDNM010000605         3425 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1890136, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000605 DATDNM010000000
VERSION     DATDNM010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3425
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1890136"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            15..836
                     /gene="deoC"
                     /locus_tag="VI413_10295"
     CDS             15..836
                     /gene="deoC"
                     /locus_tag="VI413_10295"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004139 - deoxyribose-phosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0009264 - deoxyribonucleotide catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEY6915054.1"
                     /translation="MKQDTERIIAAHYAENDNVAVYKQCLSQIDLTSLNGTDTHAEII
                     SMVEKVNGFNTAFPDLPNVGAICVYPALVPVVKEYLTENIGIASVSAGFPAAQTFIEV
                     KVAETAMAVMEGATEIDVVISIGKFLEGNYQEVYEELSELKATCRDAHLKVILETGAL
                     QTASNIKKASILAMASGADFIKTSTGKIPVAATLEATYVMCNAIKEWNAKTGAKVSYK
                     PAGGIVTTEDAVKHYTLVKEILGNEWLNNTMFRFGASRLANNLLSSIEGKEVKYF"
     gene            complement(929..1915)
                     /locus_tag="VI413_10300"
     CDS             complement(929..1915)
                     /locus_tag="VI413_10300"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEY6915055.1"
                     /translation="MSVPMNFIENIKRPILTEMQLFGKTFAEALSTDNPMLESVNEYV
                     LQKSGKQLRPMMAVLSAKLCGEVNQYTIDGALSLELLHTASLIHDDVVDDTLERRGKP
                     SVNARWTNKIAILSGDYILSKSLSCAVKTNNRPILKAIANIGMQLSDGELLQLVNARI
                     SASSEENYYTIIRKKTALLFSTCTEVGGLSVNATEDELMHLRNFGEYLGICFQIKDDI
                     FDYSPDIQIGKPTGNDIRDGKVTLPLIYGLLNTVGAERDQVLSWIENKDFAPENIQAI
                     TEFTHKSGGVKYAEVQMEAFKNKAIEELNDFADSDVKQSLILCAEYAANREF"
     gene            2166..>3425
                     /locus_tag="VI413_10305"
     CDS             2166..>3425
                     /locus_tag="VI413_10305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007211195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease H3TH domain-containing
                     protein"
                     /protein_id="HEY6915056.1"
                     /translation="MKKLFLIDAYAIIYRAYYAFIRNPRVNSKGLNTSAIFGFVNTLE
                     DVLKREKPTHIAVAFDPKGKTFRHEAYEQYKAQREATPEDIRLAVPIIKDLIKAYNIP
                     ALEVPGYEADDVIGTMAKKAEQAGFEVFMLTPDKDYGQLVSDHIYMYRPKHTGGFEIM
                     GPEEIKAKYELHSHEQVIDLLGLMGDASDNIPGCPGVGEKTAVKLLKEFGSIDALLER
                     TNELKGALKTKIEENKEQIIFSRFLATIKIDVPIDFDEKSLEIEPRNETELRALFDEL
                     EFRTMSAKMGANPFTSLPPDQPTTSIAFAKPKKSMGQMSLFDEPEEHEEKVAPKTQQH
                     AAPVIPVFDENFNGLRTINETPHNYILVDNKIKRSDLVSKLFMQKSFCFDTETTGLDM
                     FTSDLVGMSFCFKAGEAYYVSLPVDKEE"
BASE COUNT         1108 a          697 c          663 g          957 t
ORIGIN      
        1 taagcgacga gagcataaag caagatacgg aaagaatcat tgccgcacat tatgctgaaa
       61 acgataatgt ggcagtttat aaacaatgtc tgagccaaat cgatttgacg tctttgaatg
      121 gaactgatac gcatgcagag attatctcaa tggtcgagaa agtgaatggt tttaacaccg
      181 catttccaga cctgccaaac gtcggagcta tttgcgttta cccggcactg gtacccgttg
      241 taaaagaata tttgactgaa aatatcggaa ttgcatcagt ttcagctgga ttccccgcgg
      301 cacaaacctt tattgaagta aaagtcgccg aaacagctat ggctgttatg gaaggtgcta
      361 ctgaaattga tgttgtaatt tcaatcggca aatttctgga aggtaactat caagaagtgt
      421 acgaagaact ctcggagctt aaagccactt gccgcgatgc ccatttgaaa gttatacttg
      481 aaacgggtgc actgcaaaca gcttcaaata tcaaaaaagc ctctattctg gcaatggcat
      541 caggtgctga ctttatcaaa acatcaacag gcaaaatccc tgtggctgca acgctggaag
      601 caacgtatgt aatgtgtaac gcaataaaag aatggaatgc aaaaacagga gcaaaagtca
      661 gctacaaacc agctggcgga attgtaacca ccgaagatgc tgtcaagcac tacacgttgg
      721 taaaagaaat tcttgggaat gaatggctga ataataccat gtttcgcttc ggagcaagcc
      781 gcttagctaa caatttgcta agttcaattg aaggaaaaga ggtgaagtat ttctaattgt
      841 tgattttaaa tgtgcgattg ccgattgaaa ggagtaaaat tactgaatac tccaatcgta
      901 aatcgcatat ccttaaatct taaatttatt agaattctct gtttgcggca tattcagcac
      961 acaaaataag cgattgtttt acatcgctgt cagcaaagtc attgagttct tcgatcgctt
     1021 tgtttttaaa tgcctccatc tgtacctcag catactttac tccaccactt ttatgcgtaa
     1081 actcagtaat ggcttgtatg ttttccggag caaaatcctt gttttcaatc cacgataaca
     1141 cctgatcgcg ctctgctcca acagtgttta gcaagccgta aatgagtgga agtgttactt
     1201 tcccatcgcg gatatcattt ccagtaggtt ttccaatttg gatatcagga gaataatcaa
     1261 aaatatcgtc ttttatctga aaacagattc caaggtattc gccaaaattc cgtaaatgca
     1321 ttaattcatc ctcagtggca tttaccgata acccaccaac ttccgtgcat gtagaaaaca
     1381 ataaagcagt ttttttgcgg ataatagtat aataattctc ttcagacgat gccgaaatac
     1441 gggcatttac caattgaagc aattcaccgt ccgaaagttg cataccaata ttagcaatgg
     1501 cttttaaaat gggacgatta ttggttttga ctgcacaact tagtgacttc gaaagaatat
     1561 aatccccgga aagaatagct attttgtttg tccaacgcgc atttaccgag ggtttcccgc
     1621 gtcgttctaa tgtatcatca acaacatcgt cgtgaatcaa actggcagta tgtaataatt
     1681 ctaacgataa agcaccatca attgtgtatt gattaacttc cccacataat ttagccgaaa
     1741 gtacagccat catgggacgc aactgtttac cacttttttg aagcacatat tcatttacac
     1801 tctcgagcat aggattatcc gtactgagtg cctccgcaaa tgtttttcca aacaattgca
     1861 tttctgtcaa aattggtcgt ttaatgtttt caataaagtt catcggaacg ctcatattgg
     1921 tgtgctctgc aaaagtaaac aattttgccg tttgtttaac tctttaagat tatttctgta
     1981 taaattttaa ttacttttac agtcgttttg atattacaac ccatttttaa cgatttatcg
     2041 aatagcaaca agtaataaat taacgactaa ataacaaaaa agtttataaa tcagtaacac
     2101 aatatgcatt tttagttgtt acaagatttt aaatcccagc tttccacagt ttacactcag
     2161 attttatgaa gaaactcttt ctcatagatg cttacgccat catatatcgt gcatattacg
     2221 ctttcattcg caacccacgc gtaaattcca aaggactgaa cacttctgca atatttggat
     2281 ttgtaaatac ccttgaagat gtgctcaagc gcgagaagcc tacacacatt gccgttgcct
     2341 tcgacccgaa aggaaaaaca ttccgccacg aggcttacga acaatacaaa gctcagcgcg
     2401 aagcaactcc tgaagatata cggctagccg ttcctataat taaggatttg attaaagctt
     2461 acaatatacc agcactcgaa gttccgggat acgaagccga tgatgtgatt ggtaccatgg
     2521 caaaaaaggc cgaacaggcc ggattcgaag tattcatgct aactcctgat aaagattatg
     2581 gacaactggt ttccgatcac atttatatgt atcgccctaa gcacacaggc ggttttgaaa
     2641 taatgggacc ggaagaaata aaagccaagt acgaactgca tagccacgaa caggtaattg
     2701 atttgttggg gttaatgggt gatgcatctg acaatattcc cggctgcccc ggagttggtg
     2761 aaaaaacagc cgtaaaatta ttgaaggaat ttggcagcat cgatgctttg cttgagcgca
     2821 ccaatgaact taaaggagca ttaaaaacaa aaatcgaaga aaacaaagaa caaatcattt
     2881 tctcgcggtt tctggcaacg attaaaatcg acgttcctat cgatttcgat gagaaaagcc
     2941 tggaaataga acctcggaac gaaaccgaac tgcgtgcatt gttcgatgaa ctggaattcc
     3001 ggactatgtc tgctaaaatg ggagccaatc catttacatc actgccaccg gaccaaccaa
     3061 ctacaagtat tgcctttgct aagcctaaaa agtcaatggg gcagatgtct ctttttgatg
     3121 aaccagagga gcatgaggaa aaagtagcac cgaaaactca gcagcacgcc gcaccagtaa
     3181 ttccggtttt tgatgaaaat ttcaacggat tgagaacaat aaatgaaaca ccgcataatt
     3241 acatattagt cgacaataaa ataaagcgct ccgatttagt ttcaaaactc ttcatgcaaa
     3301 aatcgttttg cttcgacacc gaaacaaccg ggttggacat gttcacgtcc gatttagtag
     3361 gaatgtcttt ttgcttcaaa gcaggtgagg catattatgt ctcattgccg gtcgataaag
     3421 aagaa
//
LOCUS       DATDNM010000606         2233 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_714567, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000606 DATDNM010000000
VERSION     DATDNM010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2233
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_714567"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..373
                     /locus_tag="VI413_10310"
     CDS             <1..373
                     /locus_tag="VI413_10310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013548646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915057.1"
                     /translation="LVISAGSNSNMTKAMSTTSTQPGMYIKSSSLIASSSLLHIENAT
                     GTDIITFKPKNGGYYFHASSASMIKGSSYKIYTGGSYTGGSFVGNTSGYGLYTGGTYS
                     TTGATLKLSPTLSSTANTITF"
     gene            605..1435
                     /locus_tag="VI413_10315"
     CDS             605..1435
                     /locus_tag="VI413_10315"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6915058.1"
                     /translation="MELLQPQHYQLASEPLSQLPINQLFARVVVEGHVSGKIYVDNAE
                     HPTTFLIAHPYGMSLLFGNENNERFNEAFVRYALNESKQRQRTEWLQVYPTTWNEKLS
                     VLLGDKTVKEENRTDRDSGKVELSTRVNFAFNREKYLEFKSAFGQNSYEIVRTDKHLF
                     EEISGTVVPKYFWNSADEFVQKAIGFSLLHEGEVASTAFSAFIIDNKLELGIESVAHF
                     RGKQFAIRTCMALIDYCLENGYEPVWACRLQNTNSFKLAQKIGFEPNLFLPFYKLPEV
                     "
     gene            complement(1421..1627)
                     /locus_tag="VI413_10320"
     CDS             complement(1421..1627)
                     /locus_tag="VI413_10320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915059.1"
                     /translation="MSKLKGLLNALFYRLNCFHELDGTNNGFGFLMRGKYSGGLKKLK
                     MPARNQVPAGIGLLWLNEACLNFR"
     gene            1838..>2233
                     /locus_tag="VI413_10325"
     CDS             1838..>2233
                     /locus_tag="VI413_10325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915060.1"
                     /translation="MKKTILILAIVLSGVNLFGQNISGKWNGLLNIHGRELRIVFDIT
                     KNGRSYSATMDSPDQGAMGIPVKTTSYSDSILTLYIAEAGIEYLGDLSKENTFIGMLK
                     QSGELFPLVLTKEKIKPTKQARVERPTMVA"
BASE COUNT          745 a          425 c          425 g          638 t
ORIGIN      
        1 tttggttatt tcggccggtt ccaattcaaa catgactaaa gccatgagta caacttccac
       61 acagcccgga atgtatatta aatcaagttc actgattgcg tcaagttccc tgttacacat
      121 cgaaaatgcc accggaacgg atatcatcac attcaaacct aaaaacggag gatattattt
      181 ccatgcttcc tcggcatcaa tgataaaagg cagcagttat aaaatctaca caggcggatc
      241 gtacacaggt ggcagctttg ttggaaacac ttccggatac ggtttataca ctggcggaac
      301 ttattcaaca accggtgcaa cactgaaatt gtcgccaacg ctttcaagca ctgcaaatac
      361 aataactttc taagtagaat gatttttaaa aaaatataag attcatagat ttaataaaaa
      421 acagcgataa tctttttttg tagctggata atgtgttttt ttcgacaaaa gcccgatgtg
      481 atatcgggct ttgttttttc ttttaaataa atatgctgat aaaaattggc aggcataata
      541 aactgatttt tatatctatt tttgagacga ttataaaata aatcttattc agtacttata
      601 tttaatggaa ctacttcaac cacaacatta tcaattggct tcagagccac tttcgcaact
      661 tcccatcaac cagctttttg cgcgagtagt ggtggaaggc catgtgagtg gaaaaatcta
      721 tgtggataat gccgaacatc caaccacttt cctgattgcg catccttatg gcatgtcgct
      781 gctttttggc aacgaaaaca acgaacgttt caacgaagct tttgttcgtt atgccctgaa
      841 tgagagcaag caaaggcaac gcactgaatg gttgcaggtt tatcccacga cttggaatga
      901 gaaattatcg gttttgcttg gcgataaaac agtaaaggaa gaaaaccgga cagatagaga
      961 ttccggtaag gttgaactta gcacgcgggt aaactttgca tttaaccgtg aaaagtatct
     1021 tgaatttaaa agcgcatttg ggcaaaatag ctacgaaatt gtgcgtacag ataaacacct
     1081 tttcgaagaa ataagcggaa ccgtagtgcc gaagtatttc tggaactcgg ctgacgaatt
     1141 cgttcaaaaa gccataggat tcagcctgtt gcacgaagga gaagttgcct ccactgcttt
     1201 ttcggcattt ataattgata ataagctgga actgggtatt gagtctgtcg ctcattttcg
     1261 cggaaaacaa tttgccattc gcacctgcat ggcgttaatc gattattgtc tcgaaaacgg
     1321 atatgaaccc gtttgggcct gccggttgca aaatacaaat tcttttaaac tggctcaaaa
     1381 aataggattt gaaccaaatt tgtttcttcc gttttataaa ctacctgaag tttaaacacg
     1441 cttcattcaa ccacaataaa ccaatgcccg caggaacctg atttcttgcg ggcattttca
     1501 attttttcag gccacctgaa tattttccgc gcatcaaaaa tccaaatcca ttattcgttc
     1561 cgtctaattc atgaaaacag ttcaaccggt aaaacaaggc attcaacaat ccttttagct
     1621 tactcactat ctattagttg cgggtgatgt tcggccgaat tacttttgtt tcgtaaacat
     1681 aatgaaacaa gaatccggca attaaaagat aaaaaaagag acgggatgta atatttggaa
     1741 taaaaacaat gtctataatt ttagctggaa gaaataaaag ttttctgttt tcaattaacg
     1801 aataaaacac aaaccaaacc aataaaaatt tacaaaaatg aaaaagacaa ttttaatttt
     1861 agcaatcgtt ttgtcgggag taaatctatt tggacaaaac atctcaggaa aatggaatgg
     1921 attattgaac attcatggac gcgaactcag aattgtgttc gacatcacta aaaacggaag
     1981 aagttatagt gccacaatgg atagccctga tcagggtgct atgggaatac ctgtaaaaac
     2041 aactagctat tcggattcaa tccttacact ttatattgca gaagcaggca tcgaatatct
     2101 gggtgacctg agcaaggaaa atacttttat tggaatgctg aaacagtccg gcgaattatt
     2161 tccattagtg ttgacgaagg aaaagattaa acccactaaa caagcgagag ttgaaagacc
     2221 aacaatggtt gcc
//
LOCUS       DATDNM010000607         3819 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_74210, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000607 DATDNM010000000
VERSION     DATDNM010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3819
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74210"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1222
                     /locus_tag="VI413_10330"
     CDS             <1..1222
                     /locus_tag="VI413_10330"
                     /EC_number="1.1.1.58"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008761512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tagaturonate reductase"
                     /protein_id="HEY6915061.1"
                     /translation="LQGLDKGNKVNSLELMDVISRGLNPYTQFDEYLKLAENPEMRFV
                     VSNTTEAGIAFDPACKLTDAPAKSYPGKLTQLLYHRFKTFNGAADKGLLVFPCELIFH
                     NGTELKKCIEQYIELWELGEEFKNWFETACGIYSTLVDRIVPGYPRETIGEILEKIKL
                     EDKLVVQAEIFHLWVIEAPEWVSKEFPADKAGLNVLFVPSEKPYHERKVTLLNGPHTV
                     MAPVGYLAGFDIVKDIIEDDVMGAFVRKVMFEELLSTLDLPKAELEKFANDVLDRFRN
                     PFVKHFVTSIMLNSFPKFKTRDLPGLKIYLERKGELPSALVLGLAGIVTYYKGGKRGE
                     DQIVPNDDKAIMDLLLELWSTGSVETVAKGVLAAEFIWDEDLNKVNGLTDKLISYLDS
                     IEKNGMLETVKAIL"
     gene            1228..2718
                     /locus_tag="VI413_10335"
     CDS             1228..2718
                     /locus_tag="VI413_10335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase family protein"
                     /protein_id="HEY6915062.1"
                     /translation="MQTKYLKINSDDNVAVAIVNLHTGEKVTVRGIEITLLHDIPAGH
                     KFALKDFAEKDLIVKYGYSIGHARSAIAKGSLVNEKNIKTNLDGVLEYTYKPKLVFPD
                     IENRDLTFSGYRRKNGDVGIRNEIWVIPTVGCVNGTVNKLVEDLKRETNSAGVDAIIG
                     YPHNYGCSQLGDDHENTRKILRNMIKHPNAGGILVVGLGCENNQLTALREFLGDFDAD
                     RVKFMETQKVGDEYEVGISLLREIYEVASKDIRVEVPISELKVGLKCGGSDGFSGITA
                     NPLLGVFSDFLVAHGGTTILTEVPEMFGAETILMNRCETTDLFDKTVDLINDFKEYFI
                     KNEQPIYENPSPGNKAGGISTLEEKSLGCTQKCGKSVVTDVLKYGERTQNNGLNLLSA
                     PGNDLVAATALASAGCQIVLFTTGRGTPFGSFVPTMKISTNSTLANNKPGWIDFNAGV
                     ILENKTIEETHESFIEYIIKVASGELVNNEKKNYREIAIWKSGVTL"
     gene            complement(2790..>3819)
                     /gene="uraA"
                     /locus_tag="VI413_10340"
     CDS             complement(2790..>3819)
                     /gene="uraA"
                     /locus_tag="VI413_10340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HEY6915063.1"
                     /translation="GFSHAQSGFIFFGLFFVLISFVVKKWGIAWIDVVMPPAVMGAVV
                     AIIGLELAPVAAQQAGLAPWPTAVGQIVQPFVVSPNVILVSMFTLCIGIIGSVLFKGF
                     LQVIPVLVAAVTGYTLAFFMGMVDTTVIGKADWFALPTFQAPVFDLNAIVIIAPACIV
                     VLAEHISHLIVTGKITDNDLMKEPGLHRSLLGDGLSNIVSGFAGSPPNTTYGENIGVM
                     AITRVYSVWVIRGAALFAIAFSCIGKVSAAISTIPTPVMGGITMLLYGVIAVQGFRMF
                     VEQKVDFSKNSNMVLGAITFVVGVSGAAINIGTVQLKGMAFAAVVGVVLSLIFWMLGK
                     LGLMNKEA"
BASE COUNT         1269 a          808 c          762 g          980 t
ORIGIN      
        1 cctacaaggg cttgacaaag gaaacaaagt caacagtttg gagttaatgg atgtaatcag
       61 ccgcggactg aatccataca cccagtttga cgaatatctg aaactggctg aaaaccctga
      121 aatgcgtttt gtagtttcca atacaactga agccggcatt gcatttgatc ccgcctgcaa
      181 actaaccgat gcacccgcca aatcatatcc cggaaagctg acccagttgc tttatcatcg
      241 tttcaaaaca ttcaatggtg ctgccgataa aggcttattg gtttttccct gcgaattaat
      301 tttccacaac ggaactgaac taaaaaaatg catcgaacaa tatatcgaac tttgggaact
      361 tggagaagag ttcaaaaact ggtttgaaac tgcttgtgga atttatagca cactggttga
      421 ccgcatagta cccggctacc cacgcgaaac aattggcgag atattagaaa aaattaaatt
      481 agaagacaaa ctggttgttc aggccgaaat tttccattta tgggttattg aagctccgga
      541 atgggtttcg aaagaattcc ctgccgacaa agccggactg aacgtactgt ttgtgccaag
      601 cgaaaaacca taccacgaac gcaaagtaac cttgctgaac ggacctcaca cagtaatggc
      661 tccggtaggc tatctggccg gattcgacat tgtaaaagac attatcgaag atgatgttat
      721 gggtgctttt gttcgcaaag taatgttcga agaattgctt tcgacactag acttaccaaa
      781 agcagaactg gaaaaatttg caaatgatgt actggatcgt ttccgcaatc catttgtaaa
      841 acacttcgtt accagcatca tgctgaactc attccctaaa tttaaaaccc gcgatcttcc
      901 gggattgaaa atttacctgg aacgcaaagg cgaattgcct tcggcattag ttttaggatt
      961 ggcaggaatt gtcacttatt ataaaggtgg taaacgtggt gaagaccaga ttgtaccaaa
     1021 cgacgacaaa gcaatcatgg atttgctact cgaattatgg agtaccggtt cggttgaaac
     1081 tgttgcaaaa ggagttttag ccgcagagtt tatctgggac gaagacctga ataaagtaaa
     1141 tgggttaacc gataaattaa ttagctatct tgattctatt gagaaaaatg gaatgttaga
     1201 aactgtgaaa gctattttat aatatatatg caaactaaat atctaaaaat caactccgat
     1261 gataatgttg ccgtagcaat tgtaaacctg cataccggtg aaaaagttac tgtcagaggc
     1321 attgaaataa cccttctaca cgacattcct gccggacata aatttgcatt gaaagatttt
     1381 gccgaaaaag atctgattgt aaaatacgga tattctatcg gtcatgcacg gtccgccatt
     1441 gcaaaaggct ctttggtgaa cgaaaaaaac attaaaacca atctggatgg cgttcttgaa
     1501 tacacctaca aaccgaaatt ggtttttccg gatattgaaa accgagattt gacgtttagt
     1561 ggctaccgtc gtaaaaacgg cgatgtgggt attcgtaatg aaatctgggt tatccccact
     1621 gttggttgcg taaacggaac tgtcaataaa ttggttgaag acttaaaacg tgaaaccaac
     1681 agcgctggcg ttgatgccat catcggctat ccacacaatt acggctgctc tcaacttggc
     1741 gacgaccatg agaatacccg taaaattctg cgtaatatga ttaaacatcc gaacgctgga
     1801 ggtattttag ttgtaggatt aggttgcgaa aacaaccagc ttactgcgct acgtgaattt
     1861 ttgggagatt tcgatgctga tcgtgtcaaa ttcatggaaa cacaaaaagt aggcgatgaa
     1921 tatgaagttg gaatttcatt attaagggaa atttacgaag ttgcatcgaa agatattcgt
     1981 gttgaagtac caatcagcga attaaaagtt ggtctgaaat gtggtggttc tgatggattt
     2041 tcaggaatta cagccaatcc gctactcgga gtattctcag acttccttgt agctcatggt
     2101 ggaacgacaa ttcttacaga agttccggaa atgtttggag ctgaaaccat attaatgaat
     2161 cgttgcgaaa caaccgatct gtttgacaaa actgttgatt taattaatga tttcaaagaa
     2221 tatttcatca aaaacgaaca gccaatctac gagaacccat ctccgggaaa taaagccggt
     2281 ggcatttcaa cactcgaaga aaaatcgctg ggttgcactc agaaatgtgg aaaatcggtt
     2341 gttacagatg ttttaaaata tggtgagcga actcagaata acgggctcaa cctgttaagt
     2401 gcaccgggga atgacctggt agctgcaact gcactggctt cggcaggttg ccagatcgta
     2461 ttatttacta ccggtcgcgg aacaccattt ggttcttttg ttcctacgat gaaaatttcg
     2521 acaaattcaa cccttgcaaa caataagcca ggttggattg atttcaatgc cggtgttatt
     2581 ctggaaaata aaaccataga agaaactcac gaaagcttta ttgaatatat aatcaaagtg
     2641 gcgagtggcg agctggtaaa taacgaaaag aaaaattacc gtgaaattgc catctggaaa
     2701 tcgggtgtaa cgctctaatt tcaattcata taaaacaaaa aagcagactt tgatagtctg
     2761 cttttttgtt ttatgatcta taaagaaaac taagcctctt tattcatcaa gccaagcttg
     2821 cccagcatcc agaaaattaa tgaaagtaca actcccacca ctgcggcaaa agccattcct
     2881 ttcaactgaa cggttccgat attaatagca gcaccactca caccaaccac aaaggttata
     2941 gctccaagca ccatattgct gtttttgcta aaatctacct tttgctctac aaacatacgg
     3001 aaaccctgaa cggcaatgac accatagagc agcattgtaa ttccacccat aacaggagtt
     3061 ggaatcgttg aaatagcagc ggaaactttc cctatgcacg aaaatgcaat agcaaataat
     3121 gcggctccac gaattaccca aaccgaataa acccgtgtaa ttgccattac cccaatattt
     3181 tctccataag ttgtattagg aggcgaacct gcaaaacccg aaacaatatt actcaacccg
     3241 tctcccagca acgatcggtg cagccccggt tccttcatca aatcattgtc ggttattttt
     3301 ccggtaacaa tcaaatggct aatatgctct gccaaaacca cgatacacgc cggagcaata
     3361 attacaattg cattcagatc aaacaccgga gcctgaaacg ttggtaaagc aaaccaatca
     3421 gccttaccta taacggttgt atccaccatt cccataaaaa atgccaaggt ataacctgtt
     3481 acagcagcaa ccaaaactgg aataacctgc aagaaacctt taaacagaac tgaaccgata
     3541 atacctatgc acaatgtaaa cattgaaacc aatatcacgt taggtgaaac aacaaaaggt
     3601 tgaacaatct gaccaacggc agttggccag ggagctaaac cggcttgctg agctgcaacc
     3661 ggagcaagtt ccaacccaat aattgccaca acagcaccca taacagcagg tggcataacc
     3721 acatcaatcc acgcaattcc ccatttcttt accacaaatg agatcagcac gaaaaacaat
     3781 ccgaaaaaga taaacccaga ttgtgcatgg ctaaaccca
//
LOCUS       DATDNM010000608         2252 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1783054, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000608 DATDNM010000000
VERSION     DATDNM010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1783054"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..852)
                     /locus_tag="VI413_10345"
     CDS             complement(<1..852)
                     /locus_tag="VI413_10345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009319123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HEY6915064.1"
                     /translation="MSSDIIVDVSPSEVVIALLEDKRLVELNREMTGAKFAVGDIYLG
                     RVKKIMPSLNAAFIDVGYEKDAFLHYLDMGPQFSTLNKFLKTASSKNNKIFSISKIQS
                     EPDIDKDGKISDVLKTGQNILVQVAKEPISTKGPRLTSELSIAGRNMVLMPFSEKVSI
                     SQKIESNEEKVRLKKLIQSIRPRKYGVIVRTAAEGKKVAELDQELKRLVTKFETTFQK
                     LKKVNAPALIVGEMDRTTSLLRDIYHPNFNSIIVNDVTACEEITEYLSQIAPEKKNIV
                     KLYKGNQS"
     gene            complement(1076..1360)
                     /locus_tag="VI413_10350"
     CDS             complement(1076..1360)
                     /locus_tag="VI413_10350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009133459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEY6915065.1"
                     /translation="MTKADIVNEVSKNTGIEKVTVQKAVEAFMETVKDSLTEGRNVYL
                     RGFGSFIVKRRAEKTARNISRNTTIIIPEHFIPSFKPAKTFVAQVKDQVK"
     gene            1500..>2252
                     /gene="mutY"
                     /locus_tag="VI413_10355"
     CDS             1500..>2252
                     /gene="mutY"
                     /locus_tag="VI413_10355"
                     /inference="COORDINATES: protein motif:HMM:TIGR01084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEY6915066.1"
                     /translation="MDFFTHQIHHWYSNFKRDLPWRNTDDPYYIWLSEIILQQTRVNQ
                     GWAYYTSFIQTFPSVKDLAKASEDQVLKLWQGLGYYSRARNLHFTAKYIVDQYQGKFP
                     NTYQGLLSLKGIGEYTAAAIASISFHEAVPAVDGNVYRVLSRYFGISEPMDTTQGKKV
                     FMQLAKNLIKGTNPGMHNQAMMEFGALQCTPLKPNCPECPLNNRCFAYLNQKQGELPV
                     KSKKTKQRNRYFNYFVLIHDDSTWIRKRIHKDI"
BASE COUNT          616 a          451 c          419 g          766 t
ORIGIN      
        1 cgattgattt cctttgtata gtttgactat atttttcttt tccggcgcta tttgactcag
       61 atattcggta atttcttcac aggcagtaac atcattgaca atgatactgt tgaagttggg
      121 atgataaata tcccgcaata aagaggtggt gcggtccatt tctccgacaa tgagagcggg
      181 ggcatttacc ttttttaatt tttgaaaggt cgtctcgaac ttggttacca gccgttttag
      241 ttcctggtcc agttccgcca cttttttacc ttcagcagcg gtgcgtacaa tcaccccgta
      301 ttttctgggg cgaatgcttt ggatcagctt tttgagtctt actttttcct cattggattc
      361 aatcttttga gaaatgctca ccttttcgct gaatggcatc agcaccatgt tacggcctgc
      421 tatcgagagt tctgaggtta accggggtcc tttggtcgag atgggttcct tggccacctg
      481 taccagtatg ttttgcccgg tttttagaac atctgagatt tttccatcct tatcgatatc
      541 gggttccgac tggatcttgg agatggaaaa tattttattg tttttcgaag aagccgtttt
      601 cagaaactta ttcagggtcg aaaactgggg ccccatgtcg aggtagtgca gaaaagcatc
      661 tttttcgtat ccaacgtcaa tgaaagcagc gtttaaactg ggcattattt tttttacacg
      721 tccgagataa atatctccga cagcaaattt tgcccctgtc atttccctgt taagttcgac
      781 taaccgctta tcttccaata aagcaattac cacttcagat ggagagacat ctacaattat
      841 atcgctactc actacgtttt ttcctttttt cgtttaaaaa taacagactt aaaaacatat
      901 taaacctaaa gcagccagtg ctttaggttt aatatttaat aatgccttta aaagctaatg
      961 cttagtaaag aaaagactat ttcttctttt tatgtctgtt ttttcttagt ctctttttac
     1021 gcttgtgcgt agccattttg tgtccttttc ttttttttcc gcttggcata atgaattatt
     1081 ttacttggtc tttaacttgt gcaacaaatg ttttcgctgg tttaaaagaa gggataaaat
     1141 gttcagggat aatgatcgta gtattcctag aaatattacg tgcagttttc tctgctcttc
     1201 tttttactat aaaactgcca aaaccacgaa gatacacgtt tcttccttcg gttagagaat
     1261 cttttactgt ttccatgaat gcttcaactg ctttctgtac tgtcactttc tcaatacctg
     1321 tgttcttact cacctcgttt acgatatctg cttttgtcat ttcttaaaat atttagtttt
     1381 caacaattta taaaaccgag acaattggtg tgcaaaaata aaaattattt aaaaattaga
     1441 aacattataa ttagattatt tttgtaattc ataaagattt taaagtagtt agcgaatata
     1501 tggatttttt cactcatcaa attcaccatt ggtattctaa ttttaagcgg gatttgcctt
     1561 ggcgaaacac tgatgatcct tattatatat ggctttccga aatcattctg cagcagacca
     1621 gagtcaatca gggatgggct tattacacca gctttataca gacatttccc agtgttaagg
     1681 atttggcaaa ggcctcagaa gatcaggttt tgaagttatg gcaaggcctt ggttattatt
     1741 caagggccag aaaccttcat ttcaccgcca aatatatcgt ggatcagtac cagggtaaat
     1801 ttcccaatac ctatcaaggg ctgctctcat taaaaggtat tggagaatat accgccgccg
     1861 ccatcgcatc gatttctttt cacgaagcag tacccgctgt cgatgggaat gtctacaggg
     1921 tgctttcccg ttattttgga atttcagagc cgatggatac cacccaggga aagaaagtgt
     1981 ttatgcaact ggctaaaaat cttatcaagg gaaccaatcc gggcatgcat aaccaggcaa
     2041 tgatggaatt tggagccctg cagtgtaccc cgttaaagcc aaattgcccg gagtgccctt
     2101 taaacaatcg ttgctttgct tatttaaatc aaaagcaagg agagcttccc gtaaaatcaa
     2161 aaaagaccaa acagcgcaac cgttacttta attactttgt tctaattcat gatgattcaa
     2221 cctggatcag aaaacgcatt cataaggaca tt
//
LOCUS       DATDNM010000609         3511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1890878, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000609 DATDNM010000000
VERSION     DATDNM010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1890878"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..745
                     /locus_tag="VI413_10360"
     CDS             101..745
                     /locus_tag="VI413_10360"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEY6915067.1"
                     /translation="MKKAIVIGGTGMVGTQLIKQLIEDKNYSEVVSLVRRASGISDPK
                     LNEQVINFDQPDSWKALITGDVLFSTLGTTIAQAKTKDAQYKVDFTYQYNVAKIAAAN
                     GVPSYVLVSSAGATSKSKVFYSNMKGQLEDAVKLLPFKVISIIRPGQLAGERTEKRTA
                     EKIALSIMYGLNKIGLFQRFKPIQGWQVAQSMIRAAEKQQSGSYTMNEVFDLAK"
     gene            921..3365
                     /locus_tag="VI413_10365"
     CDS             921..3365
                     /locus_tag="VI413_10365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019539186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6915068.1"
                     /translation="MKKTKLICLILLTAIGIGKAQNYTISGYITDDKSGETFISASVY
                     DSNTKKGTVSNNYGFYSLTIPKGKVALLYSYVGHAPQELNFDLNKDTVINIRLKESIE
                     LKEVTVTANRKELGVQGSQMSAIEVPVTQLKSVPTLFGETDILKALQLLPGVKAGVEG
                     SAGFYVRGGGPDENLFLLDGIPIYNVNHMGGFFSVFNADAIKSVTLYKGSFPARFGGR
                     LSSVLDIQMNDGNNERLHGNITVGLISSKANLEGPLFDKNTTFSLSARRTYFDILAQP
                     IIKYAATQSGSSGNTSAGYYFYDVNAKITHRFSDKDRLFLSTFMGDDVIYSNIPNDSY
                     NYTNGSYSSKLKLGWQWGNLVTALRWNHVISNKLFMNTTAAYTRYRFNMDIGTTETQK
                     TITPPSTSTQTIDLGYRSGIGDYSAKVDFDYAPNPNHDIKFGANYTYHTFRPGVAVAQ
                     SKLKNDTSTQQMDTIIGDKNIFSHETALYFEDNITINHFIKANAGLHYSAFIVQGQFY
                     NYLQPRLGIRLLVNDKLSFKAGYAAMSQNIHLLSNNNISLPTDLWVPVTKRIRPMNSH
                     QYSAGVFYNLLNLVDLSVEGYYKSMNNLVEYKDGASFIGSSTGWEDKVYMGRGWAYGV
                     EFLAQKSVGKTTGWIGYTWAKSERLFNRPGQIINNGEVFPTKYDIRNFVSIVVSHKFS
                     KRIDVSANWVYGTGISGTLALQNYYPAPLPGELYNYNNSLPYINKRNNFRYPDYQRLD
                     VGINFHKQLKHGIRTWNFSIYNVYNQMNPFLIYPSTKYEYVYTSNSTMLQPTKKVLNK
                     ITIFPIIPSVSYSYKF"
BASE COUNT         1165 a          701 c          687 g          958 t
ORIGIN      
        1 ttgacggtgt attgtacttc ctgggattca gggatataca tattgataac taaaaaagca
       61 gcaagcacta aaaggcaagc agtaaggcaa aagaaaaaat atgaagaaag caattgttat
      121 aggcggaacc ggaatggttg gtacacaact tattaagcaa ttaattgaag ataaaaatta
      181 ttccgaagtt gtttcattgg ttcgccgtgc aagcggtatt tcggatccca aactgaatga
      241 acaggttatt aattttgacc agcccgacag ttggaaagca ttgataactg gcgatgtgtt
      301 attttcaacc cttggaacca ctattgcgca agccaaaaca aaagacgccc aatacaaggt
      361 tgatttcacg tatcaatata atgttgctaa aattgcagct gcaaacggag ttccatcata
      421 cgtgctggtt tcgtcagccg gtgcaacttc taaatcgaaa gtattttatt caaacatgaa
      481 agggcagttg gaagatgccg tgaaattatt gccattcaaa gtaataagca ttattcgccc
      541 cggacaacta gccggcgaac gaaccgaaaa aagaaccgct gaaaaaatag ccctatctat
      601 catgtatgga ttaaataaaa taggattatt tcaacgtttt aaaccaattc agggctggca
      661 ggtagcgcag tcaatgattc gtgctgcaga aaaacaacaa tctggctcct ataccatgaa
      721 tgaagttttt gatctggcca aatagtgcca accattgcaa aactatacgc ctcacatttc
      781 gtttgaatat gtgaggcgtt ttatttatat taacaataaa ggaatttatc cctaataaac
      841 aataaatttc gtacaaaagg caacaaagtt aaataattct cgttaagttt gtataaattt
      901 ctaaacacat tatacatttt atgaagaaaa caaaattaat ctgtctaatt ctccttactg
      961 caattggaat tggtaaagcc caaaattaca caatcagtgg atatattact gatgataaaa
     1021 gcggggaaac atttatcagt gcctcggttt acgattcaaa tacgaaaaaa ggaaccgtga
     1081 gcaacaatta tgggttttat tcgctcacca ttcctaaagg taaagtagcg ttgctttatt
     1141 cgtatgtagg gcatgctcct caggaactaa atttcgatct gaacaaagat actgttatca
     1201 atatccggtt aaaagaatcg atagaactga aagaagtgac tgtaactgcc aaccgaaaag
     1261 aacttggtgt gcaaggctct cagatgagcg ccatcgaagt accggtcacc caattaaaat
     1321 cagtgcctac tttattcgga gaaactgata ttttaaaggc ccttcagtta ttacctggtg
     1381 taaaagccgg agttgaaggc tctgccggat tttatgtccg tggaggtggt ccggatgaaa
     1441 atcttttttt actcgatgga attccaattt acaacgtgaa ccacatgggt ggattctttt
     1501 cggtgttcaa tgccgatgcc atcaaaagcg taacacttta taaaggaagt tttcctgcac
     1561 gctttggagg ccggctctcg tcggtacttg atatacagat gaatgatggg aataatgaaa
     1621 ggctacatgg aaatataact gtaggattaa tttcatcgaa agcaaatctt gaaggcccgc
     1681 tgtttgataa gaataccaca ttcagcttgt cagcccgacg gacctatttt gatattcttg
     1741 cacaacccat tatcaagtac gcagcgacac agagtggtag tagtggtaat acttctgcgg
     1801 gctattactt ctacgatgtg aacgccaaaa tcacgcatcg gttctcagat aaagaccggc
     1861 tttttctgag cacatttatg ggagacgacg taatttacag taatatccca aatgattctt
     1921 acaattatac caacggatcg tactcaagca aattaaagtt aggctggcaa tggggaaatt
     1981 tagtaacagc tctgcgttgg aatcacgtca taagcaacaa gttgtttatg aatacaaccg
     2041 cagcatacac ccgttaccgc ttcaatatgg acattggaac aacagaaact caaaaaacaa
     2101 ttaccccacc aagtacgagt acgcaaacta tagatctggg ctatcgctcc ggcattgggg
     2161 attattctgc gaaagtggat ttcgactatg caccaaaccc gaaccacgat attaagttcg
     2221 gtgccaatta tacatatcac actttccgtc cgggggtggc agtcgctcag tccaaattaa
     2281 aaaatgacac atccacgcag caaatggata caattatcgg ggataaaaat atcttttcgc
     2341 acgagacagc tttgtatttt gaagataata tcaccatcaa tcattttata aaagccaatg
     2401 ccggactgca ttactcggca ttcattgttc agggacagtt ctacaactac ctccaaccac
     2461 ggctgggcat acgattgctg gtaaacgaca aactttcgtt caaagccggt tatgctgcca
     2521 tgagccaaaa cattcatttg ttgtccaata acaatatcag cttgccaacg gatttatggg
     2581 tgcctgtaac caagcggatc agaccaatga actcacacca atactcggca ggtgtatttt
     2641 acaatctcct taacttagta gatctgtcgg tagaaggcta ttataaatcg atgaacaatc
     2701 tggttgaata caaggatgga gcttcattca tcggatccag taccggttgg gaagataaag
     2761 tatatatggg gcgtggctgg gcatacggag ttgaattcct ggctcagaaa agcgttggaa
     2821 aaacgacagg ttggattgga tacacctggg caaaatcaga acggctgttc aacagaccgg
     2881 gccaaattat aaacaatggc gaagttttcc ccacgaaata tgatatcagg aactttgtga
     2941 gcattgttgt ttcgcacaag ttcagcaaac gcattgatgt atccgccaac tgggtttatg
     3001 gtaccggtat atccggcaca cttgcactgc agaattatta tcctgctcca ctgccaggcg
     3061 aactgtacaa ttacaataat tcgctgccat acattaacaa acgaaacaat ttcagatatc
     3121 cggactatca aaggttggat gtaggaatta atttccacaa gcaactgaaa cacggaatcc
     3181 gaacctggaa cttcagcata tacaatgtat ataaccaaat gaatccgttc ctgatttatc
     3241 cgtcaacaaa atatgaatat gtatatacaa gcaattcaac catgctccaa ccaaccaaaa
     3301 aagtgttgaa taaaatcact atttttccga ttatcccgtc tgtaagctat tcgtataaat
     3361 tctaatttta aacctgaaaa acaaaatgaa aacaaattat atatcattca ttatattatt
     3421 ggcatcaacc attgtgtttc actcctgcga aaatgaaatt aatttttccg gagaagttac
     3481 aaaaccgttg ttagtcatta acagtttcat c
//
LOCUS       DATDNM010000610         2743 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_929881, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000610 DATDNM010000000
VERSION     DATDNM010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2743
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_929881"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VI413_10370"
     CDS             complement(<1..183)
                     /locus_tag="VI413_10370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915069.1"
                     /translation="MRKCKATNVLNLCLFVLVTVLPVACKKEKVQEVPLGKVTQGTFY
                     IDIYEEGEIEAIRSTNA"
     gene            complement(205..1455)
                     /locus_tag="VI413_10375"
     CDS             complement(205..1455)
                     /locus_tag="VI413_10375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915070.1"
                     /translation="MSKLHIYTSCILLSMFSYSCKPNEVKPPTTYTVKTTDFEDALEI
                     EGLVQPVQVNTVATPGDVDGVVVYLVEDGTYVKAGDTVCILEDKGLQERYDQIQLQLE
                     NSVAELNKTKADLDLQYALLEAQVKSNAAETDIANLDSVDLRFSSQIQSRIKRLELEK
                     VSIEKFKLQKKLKSMAVINQSEIRKLEIRNKTLTSRLESAKKQLDELKLTAPKDGMAT
                     RAIHWVTRRKVLPTDPVWNRMPLVIIPELDKMKVLISATEGEYKRINVNDSVQYSFDA
                     MPDNKAWGKIQKKAPVGQPVKENSKVKMFEIEASVDKSLLIPGPDLTTRCKIILKHIP
                     DTIVIPQICIFEEDSMKFVYVQKAKTFEKRQITIGTTSVKEAVVTSGLKRNEKIAIIK
                     PESELINGKRLLAIAKNNSKKKTH"
     gene            complement(1850..2527)
                     /locus_tag="VI413_10380"
     CDS             complement(1850..2527)
                     /locus_tag="VI413_10380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915071.1"
                     /translation="MKKSNIILIAFSVFILASILVLFIFGKKHNDEEKINHIRYTQLS
                     PFSVIVTEKGADVHIDFSDTARIGVEYLEKKKSLKLYSIKGDTLFVKGGLRTFVKCPK
                     LTALECRESFWVGVSNYSTDTLKANITGGRVYFYTADNIDEEKGIGKIVKPVLLLHAS
                     QKAEVDIYKLLNTLSVTISDGSFVNNRLQIGKLNAKLIDKSTLQLSASPSQSAVVRDS
                     TSRFRVF"
     gene            complement(2524..>2743)
                     /locus_tag="VI413_10385"
     CDS             complement(2524..>2743)
                     /locus_tag="VI413_10385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY6915072.1"
                     /translation="RTYSILQDAGVIDNKRGIGFFVADNAVELIREKEKKEFFHNELP
                     DFIRKVELLKLTEQDLSELLNLIKSNSK"
BASE COUNT          771 a          523 c          515 g          934 t
ORIGIN      
        1 ggcatttgta gaacgaatgg cctctatttc accttcttcg taaatatcaa tataaaaagt
       61 tccctgtgta actttcccca gaggtacttc ctgcactttc tcttttttgc aggctaccgg
      121 caaaacggta acgagcacga aaagacaaag atttaaaaca ttggtggctt tacattttct
      181 catgtatatc tgattaagtt tctgttaatg agtctttttc tttgaattat ttttagctat
      241 agccaacagt cgtttcccgt ttataagttc gctttcgggt ttgataatgg caattttctc
      301 gtttcgttta agaccagatg ttacaactgc ttcttttaca gacgtggtac caatggttat
      361 ctgccttttt tcgaatgttt tggctttttg gacatataca aatttcattg aatcttcttc
      421 gaaaatacaa atttgcggga tgacaatggt gtcaggaatg tgtttgagaa taattttgca
      481 acgggtagtg aggtcgggac cgggaattaa taatgattta tccaccgatg cctcgatttc
      541 gaacattttt actttggaat tttctttaac aggctggcca accggggctt ttttctgaat
      601 ctttccccag gctttattat cgggcatagc gtcgaaagaa tactgcacgg aatcatttac
      661 attgatgcgt ttatattcgc cttcagttgc agaaataagc actttcattt tatccagttc
      721 gggaataata accaacggca ttcggttcca tacgggatcg gtcggtagca cttttctacg
      781 cgtcacccaa tggatggcac gggtagccat tccgtctttc ggagctgtca gtttcaattc
      841 atccagttgt ttttttgcac tttcaagcct ggatgtaaga gttttgttac gtatttcaag
      901 cttgcgaatc tccgactggt taataacagc catagatttc agctttttct ggagtttgaa
      961 tttttcgatg gatacttttt caagttccaa tctttttatg cgactttgaa tttgtgatga
     1021 gaatctcaaa tccactgaat caagattcgc aatatcagtt tcagcagcat tacttttcac
     1081 ttgagcctcg agtaatgcat attgcaggtc cagatcggct tttgttttat tcagttcagc
     1141 aaccgagttc tcaagttgta gctgtatttg atcataacgt tcttgtaatc ctttatcttc
     1201 cagaatacaa accgtatctc cggctttcac ataagttcca tcttcaacca ggtaaaccac
     1261 tactccatcg acatctccgg gagttgccac ggtattaacc tgtacaggtt gaacaagacc
     1321 ttcaatttcc aatgcatctt caaagtctgt agtttttaca gtgtatgtcg tgggcggttt
     1381 tacctcgttc ggcttacaag agtaagaaaa catggagagc aatatacagc tggtataaat
     1441 gtgtaattta gacaaggatt ggatttttat taagtgatac tgcaaattaa cgtaaattat
     1501 tttgttttat tgagtggcta ttaataatta tatgtttttt tagaaaaata caacttttac
     1561 taaaaaggca cagtcaccca cacaaaacca atcggtttat tttgagtgat ttaaatgtaa
     1621 cgaagaataa ttaaaatcat tacatattta caattttaaa tacaacgatc gagacagaat
     1681 atgtttaact ggaagctaat tatgaggttt aagaggtttt tagtattatc aaaacctcac
     1741 aacccaaatg taaatgtatt atttcagctg aattgatttt atttacaaag catctctcct
     1801 gtacgcatta gcatacaaga gagatgaaaa aatcgccagg gagggattgt taaaaaactc
     1861 gaaacctact tgtcgaatcg cgcactacag cagattgaga cggcgatgca gaaagctgaa
     1921 gagtagattt atcaattaat tttgcattaa gtttcccgat ttgcagtctg ttgtttacaa
     1981 aacttccatc agaaatggtt acacttaatg tattcaacaa tttgtagatg tccacttctg
     2041 ccttttggga tgcgtgaagc agaagtacag gtttcacaat tttgccgata cccttttctt
     2101 catcgatatt gtcggctgta taaaaataaa cccttccacc tgtaatattt gctttcaagg
     2161 tgtcagtgct gtaatttgaa actcctaccc agaagctttc acggcactct aaagctgtaa
     2221 gtttagggca tttcacaaaa gtgcgcaagc cgcctttcac aaacaaagtg tcgcctttta
     2281 tactatagag tttaaggctt tttttctttt caagatactc gacaccaatt ctggctgtgt
     2341 ccgaaaaatc gatatgtaca tcagctcctt tttccgttac aattacactg aacggtgaca
     2401 gttgggtata cctgatgtgg ttgattttct cttcgtcgtt gtgctttttt ccaaaaatga
     2461 agagtaccag aatactggcc agaatgaaca cagagaaggc tatgaggatg atattacttt
     2521 ttttcatttt gaatttgatt taataaggtt caataattcc gataaatcct gctcagtgag
     2581 tttaagtagt tccactttgc ggataaaatc gggtaactca ttgtggaaga attctttttt
     2641 ctctttttcg cgaatcagtt ccacagcgtt gtcggccaca aaaaagccga tgccacgttt
     2701 gttgtctatt acacctgcat cctgcaggat ggaatacgtg cgg
//
LOCUS       DATDNM010000611         3144 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1783596, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000611 DATDNM010000000
VERSION     DATDNM010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3144
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1783596"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..312
                     /locus_tag="VI413_10390"
     CDS             <1..312
                     /locus_tag="VI413_10390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005844159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide synthetase C
                     domain-containing protein"
                     /protein_id="HEY6915073.1"
                     /translation="NLNEKTVEFDERAAVTVVLVSGGYPEEFEKGKVITGFENVEGSI
                     VFHAGTTQKGDDIVTSGGRVMAVSSYGATKTEALAASFANAQKLTYENKYFRSDIGFD
                     L"
     gene            530..1681
                     /locus_tag="VI413_10395"
     CDS             530..1681
                     /locus_tag="VI413_10395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY6915074.1"
                     /translation="MAKILVIDDERSIRNTLKDILEFEKHQVTLAENGKLGLEAAQNG
                     IFDLIFSDIKMPEMDGIELLGHLIESNIEAPIVMISGHGNIETAVECIKKGAFDFIVK
                     PIDLNRLLITVRNALERNTLVVETKTLKKKVAKRHQMIGESPAIEKVRMMISRVAPTD
                     ARVLITGENGTGKEVVARLLYEGSNRTDAPFVEVNCAAIPSELIESELFGHEKGAFTS
                     AIKQRIGKFEQADGGTIFLDEIGDMSLSAQTKVLRVLQESELTRVGSDKSIKVNVRVL
                     AATNKNLKKEIEAGNFREDLFHRLNVIPIHVPSLDERKDDIPLLVKHFCELICGEQGI
                     QPKNFEEAAIEALKLRSWTGNIRELRNVVERLIILGGNAITKEDVEMFG"
     gene            1778..2689
                     /locus_tag="VI413_10400"
     CDS             1778..2689
                     /locus_tag="VI413_10400"
                     /inference="COORDINATES: protein motif:HMM:NF022720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3078 domain-containing protein"
                     /protein_id="HEY6915075.1"
                     /translation="MKTRITIFMVLICNLFIAAKAQVTEGESKLKSLATDTISGWKKG
                     GATSINLAQTALSNWAGGGENSFALSGVLGLFANYKDTTAVWDNSLDIGYGVLKQGTG
                     GLRKTDDRLEINSKYGKKAFTNFYYAALINFKTQFAPGYNYTVNQKISNFLAPGYLVG
                     AIGLNYQPNSYFSAFLAPFTGRLTIVKDTALSNSGAFGVDPGKSSRMEFGGYARILFN
                     KQDFKGELMKNVSITSKLDLFTNYLKDPQNVDVSWENIIFLKVNKYIVVSLNTNIVYD
                     ADVKDPVDNVAKVQFKEILGVGFAYKF"
     gene            complement(2825..>3144)
                     /locus_tag="VI413_10405"
     CDS             complement(2825..>3144)
                     /locus_tag="VI413_10405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007661265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF933 domain-containing protein"
                     /protein_id="HEY6915076.1"
                     /translation="VGLTESGVARLIRAAYHLLDLQTYFTCGVQEVRAWTFGRGWKAP
                     QCAGVIHTDFEKGFIRAEVIKYTDFTTLGSEAACKEAGKMNVEGKEYVVQDGDIMHFR
                     FNV"
BASE COUNT         1007 a          651 c          680 g          806 t
ORIGIN      
        1 aatctgaacg aaaaaacagt tgagtttgat gaacgcgctg ccgttacagt agtattggtt
       61 tcgggaggat atcctgaaga atttgaaaaa ggaaaggtaa tcaccggctt cgaaaacgta
      121 gaaggaagta tcgtcttcca cgccggaact actcaaaaag gtgatgatat tgtaaccagc
      181 ggtggccgcg ttatggctgt gagttcatac ggtgctacga aaactgaagc actggcagct
      241 tcatttgcta atgcgcaaaa actcacctac gaaaataaat atttcagaag tgatattgga
      301 tttgatttat aaaacaacct ttaacctccg tcagttgacg gactagctct aaaggggaat
      361 aagaccaaat atctgaatag tccataaaat ttcgagccct ctttgcaaaa tccgcaaaga
      421 gggctttctt attgtaagca ttatggcact ttatttgttt caataaaaaa ctcttgctta
      481 ttgatttttt aaaactattt ttgcaaataa acccacacgc acaatactta tggctaaaat
      541 attggttatc gacgacgaac gcagcatccg caatacgctg aaagacattc tggaatttga
      601 gaaacatcag gtaacgctcg ccgaaaacgg caaactgggg ctggaagccg ctcaaaacgg
      661 aatcttcgat ttgatcttct ctgatatcaa gatgcccgaa atggatggta tcgaattgct
      721 cgggcacctt atcgaatcaa atattgaggc tcccattgtt atgatttccg gccatggcaa
      781 tatagaaact gcggtggaat gtatcaaaaa aggagcgttt gattttatcg ttaaaccaat
      841 agatctcaac cgtttgttga ttaccgttcg gaatgcgttg gaaagaaaca cattggtagt
      901 agaaaccaaa acgctgaaaa agaaagtagc caagcgccat caaatgattg gcgaatcgcc
      961 cgctattgaa aaagtccgca tgatgattag ccgtgtcgct ccgaccgatg cgcgtgtact
     1021 cattaccggc gaaaacggaa caggcaaaga agtcgtagca cgcctgcttt acgaaggcag
     1081 caaccggact gatgccccgt tcgtagaagt aaactgcgcc gccatccctt cggaactaat
     1141 tgaaagcgaa ttgttcggac acgagaaagg agcttttact tcggctatca agcaacgtat
     1201 cggaaaattt gaacaagccg atggtggaac catttttctg gacgaaattg gcgacatgag
     1261 cctttcggct caaaccaaag tactccgcgt attgcaggaa agtgaattga cacgcgtagg
     1321 tagcgacaaa agcataaaag taaatgtacg cgtgttggcc gccaccaaca agaacctgaa
     1381 aaaagaaatt gaagcaggga atttccgcga ggacttattc caccggttaa atgtgattcc
     1441 tatccacgtg cctagcctcg atgaacgcaa agatgatatt ccattattgg taaaacattt
     1501 ctgcgaactg atatgtggag aacaaggcat tcagccgaaa aattttgaag aagcagctat
     1561 tgaagcactt aagctacgct cctggaccgg caatatccgt gaactaagaa atgtggtaga
     1621 gcgtttaata attttgggtg gaaacgcaat tacaaaagag gatgtagaaa tgttcggata
     1681 actcaggcaa gacggggaaa gattttgcgt tattcttagg ttggaatttg tattaatttg
     1741 agtatataat atattaatta tcaaattatt ttagcttatg aaaacaagaa tcacaatctt
     1801 tatggtactc atctgcaatt tgttcattgc agccaaggca caagtcaccg aaggcgaaag
     1861 caagctaaaa agcctggcaa ctgacactat cagcggttgg aaaaaaggag gtgcaacaag
     1921 tattaatctc gcccaaacag cattatcaaa ctgggctggt ggtggcgaaa attcgtttgc
     1981 attaagcgga gtactggggc tctttgccaa ttacaaagac actacagcag tctgggataa
     2041 ctcgttggat attggctacg gtgttttaaa acaaggcact ggcggtctac gaaaaacgga
     2101 tgaccgactg gaaatcaact ccaagtatgg gaaaaaagcc tttacaaatt tctattatgc
     2161 cgcattgata aatttcaaaa cacaatttgc acccgggtat aattacaccg tcaaccagaa
     2221 gatatccaac tttctggctc cgggttatct ggttggtgca atcggactaa actatcagcc
     2281 caatagctat ttcagtgctt ttcttgcacc tttcaccggc cggttaacga ttgtaaaaga
     2341 tacggcatta tctaattccg gcgcatttgg tgttgacccc ggaaaaagtt cacgcatgga
     2401 atttggcgga tatgcccgta ttttattcaa caaacaagat ttcaaagggg aattgatgaa
     2461 aaacgtaagc attacttcca agctggattt attcaccaat tacctgaaag acccgcaaaa
     2521 tgtagacgtc agttgggaaa atattatctt cctgaaagta aataagtata ttgtggtaag
     2581 cctgaatacc aatatcgttt acgatgctga tgtgaaagat ccggtagaca atgtggcaaa
     2641 agttcagttt aaagagattc tgggagtggg atttgcctat aaattctgag acgggcccca
     2701 aacccctaaa ggggcttaaa tcaagacatt cataaaaaaa taaagttgcc aataactcat
     2761 agattattgg caactttatt actccccttc agagcctgtc cgtctactga cggaggttag
     2821 gggtctacac attaaacctg aagtgcataa tatcaccatc ctgcaccaca tattcttttc
     2881 cttccacgtt cattttaccg gcttctttac aagcggcctc agagccaagc gtagtaaaat
     2941 cggtatactt gataacctcc gcacggataa atcccttttc gaaatcggta tgaataacgc
     3001 ccgcacattg tggagctttc cagccgcgtc cgaaagtcca ggcacgcact tcctgcacac
     3061 cacaggtaaa ataggtttgt aaatccagca aatgataagc tgcacgaatt aagcgagcaa
     3121 cacccgattc agtcagacca acct
//
LOCUS       DATDNM010000612         2306 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1677909, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000612 DATDNM010000000
VERSION     DATDNM010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1677909"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VI413_10410"
     CDS             complement(<1..185)
                     /locus_tag="VI413_10410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004353674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 family protein"
                     /protein_id="HEY6915077.1"
                     /translation="MKIKRVYEKPEMEDGLRILVDRLWPRGLTKEKAHVDLWLKDIAP
                     TTELRKWFGHEPARWNE"
     gene            complement(226..417)
                     /locus_tag="VI413_10415"
     CDS             complement(226..417)
                     /locus_tag="VI413_10415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005854237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEY6915078.1"
                     /translation="MAIAKVWIEDGCTSCGVCEDVCPQVFLIKDISTIIEGVNYSEYE
                     AKIKEAADNCPVEVIKFSE"
     gene            complement(580..1638)
                     /locus_tag="VI413_10420"
     CDS             complement(580..1638)
                     /locus_tag="VI413_10420"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEY6915079.1"
                     /translation="MRLLAGLVIHFFGDPGEINLIVNNIRFNKGKLEPKNNPSMILSS
                     LLCIASGGSLGPEAPLVQVTGSTGSWLGKMFRLKGEELRSLSIAGMASGFTALFGAPL
                     GGSLFSLEILHHKHALEYYKAIIPALVASCFSYVIFALIIHLGLGPIWHLSSYEYSGI
                     FDFGYAILFRIAATAIGWGFIYSTKALKFLFEKRRLPIFIKTLIGGILLGIIAFYFPL
                     TRYFGHQQLNSLLTDGLPINLLIAILIFKIITIAITVTSGWRGGFIIPLFFVGATLGL
                     IIHHLFPGTNLTLTIISCMAAINACVTRTPMSTTILLATLTGFSYFVPILFASLTGYF
                     LAPKRPFISSQLENHSIV"
     gene            complement(1584..1850)
                     /locus_tag="VI413_10425"
     CDS             complement(1584..1850)
                     /locus_tag="VI413_10425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915080.1"
                     /translation="MKLKRRIIRYSTILDKYETHNPFVFSRMFLLWALLGLIGGLIAG
                     LYWIVLEFLTHEIAFFEGWLVIPVMATCGYWQDWLSISLAIRAR"
     gene            complement(1900..>2306)
                     /locus_tag="VI413_10430"
     CDS             complement(1900..>2306)
                     /locus_tag="VI413_10430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915081.1"
                     /translation="WNYKTGDVYDLIKKQRYVRPVKMGPPVGDYKVSGFSSDFQHQPV
                     AFEYEKGAINIDKGIAFSAMPENVNTKSPMSLWNLALEVHTGRIYGAFLGMFYILVIP
                     LGGMLVLFTLITGIVIWFKYHLKSKKGTKRIE"
BASE COUNT          719 a          511 c          411 g          665 t
ORIGIN      
        1 aattcattcc atctggcagg ctcatgccca aaccatttcc ggagttcagt agttggcgca
       61 atatccttta gccataaatc tacatgagct ttctctttgg tcaacccacg tggccataac
      121 ctatccacaa ggatgcgcag accatcttcc atttcaggtt tttcatatac acgtttaatc
      181 ttcatgtcca tgttatatct tcaggtatgt gccatgaaaa catacctact ctgaaaattt
      241 gatgacttct acaggacagt tatctgctgc ttcctttatt ttggcctcgt actccgaata
      301 gttgacacct tcaattattg tcgatatatc tttaatcaga aaaacttgtg gacaaacatc
      361 ttcgcacacg ccacaagaag tacagccgtc ttcaatccaa acttttgcta ttgccatgat
      421 ttcttttatt ttgaaattta attatttgct tttcgatata ttaattgtac tctattcaac
      481 aaactacgca atctttagtt ctcggaattt cataatagaa tttatttaaa acaattctta
      541 gattcttcaa ttgaagctca aaaaatgatt tcctgtttat tacacaatac tatgattttc
      601 cagttgcgag cttataaatg gtctcttcgg agccagaaaa tatcctgtta aactggcaaa
      661 taaaatagga acaaagtacg agaaccctgt aagcgtagcc agcaaaatag tggtactcat
      721 aggagttcgt gtcacacagg catttattgc agccatgcaa ctgatgatag tcaaagtgag
      781 gttggtaccc ggaaataaat gatgaatgat taagcctagt gttgctccta caaaaaacag
      841 aggaatgata aaaccacctc tccagcccga agttacggta atggcaatgg taataatttt
      901 aaaaatcagg atagctatca acaggttgat gggcaagcca tccgtcaaaa gagaattcaa
      961 ctgctgatgt ccgaaatacc ttgtcaatgg gaaataaaat gcaattatgc ccagcaaaat
     1021 gccaccaatc aatgttttta tgaatatcgg taggcgcctt ttctcaaaca gaaacttgag
     1081 ggcttttgtg ctgtaaatga atccccaccc tattgcagtg gcagctattc taaaaagaat
     1141 agcataacca aagtcaaaaa tcccggaata ctcgtacgac gacaaatgcc atattggacc
     1201 aaggcccaaa tgaatgatca gagcaaagat tacatagcta aaacaacttg ctactaaggc
     1261 cggtatgatt gccttgtaat attcaagggc gtgtttgtgg tggagaattt ccaacgaaaa
     1321 taagcttccg cctaacgggg cgccaaacag cgctgtaaac cccgaagcca ttccggcaat
     1381 gctcaacgac cttaattcct ccccttttag cctgaacatc tttccgagcc agctgcctgt
     1441 tgaaccggtg acctgcacca gtggagcttc cggacccagg ctaccacccg aagcaatgca
     1501 aagcagggaa gacaaaatca ttgatgggtt atttttgggc tccagtttcc ctttattaaa
     1561 gcggatattg tttacaatca ggtttatctc gcccggatcg ccaaagaaat ggataaccaa
     1621 tcctgccagt aaccgcatgt tgccattacg gggataacca accagccttc aaaaaatgca
     1681 atttcatgtg tcagaaattc aagaacaatc cagtacaaac cggcaattag tccgcctatc
     1741 aagcccaaaa gtgcccacaa tagaaacatt cgactaaata caaatgggtt atgagtttcg
     1801 tatttatcca gaatagttga gtatctaatt attcttcgtt tgagcttcac gttgctgcgt
     1861 tgattttaga aatataaaaa tgctatcccc tttataatgc tattctatcc gttttgttcc
     1921 tttttttgat tttaaatggt atttaaacca aataacaata cctgtaatca gcgtgaaaag
     1981 caccaacatg ccgcccaatg gaatcaccag aatataaaac attcctaaga atgcgccata
     2041 aattctaccc gtgtgaactt ccagggcaag attccagagt gacatgggtg atttggtatt
     2101 tacattttca ggcatagcac tgaatgcaat acctttatcg atatttattg cacctttttc
     2161 gtattcgaaa gctacaggct gatgttggaa atcggagctg aaaccggata ccttataatc
     2221 tccaacaggc ggacccattt ttaccggacg aacataccgt tgctttttaa tcaaatcata
     2281 cacatcgccc gttttgtaat tccacc
//
LOCUS       DATDNM010000613         2025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_289902, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000613 DATDNM010000000
VERSION     DATDNM010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289902"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VI413_10435"
     CDS             complement(<1..508)
                     /locus_tag="VI413_10435"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HEY6915082.1"
                     /translation="MKSSLKIALSAALFLVISVTSFSQKKPQFFTAKDASNWFYVLND
                     KKLNATDVFKMKDGVLSVTGESSGYLRTKKSYKNFTLSLEWRWTKVPANSGVLVHIQP
                     KDTVWPVCYQVQQKADAAGDIICMNGLWAKECTDSVKFTVKKMQASNEKPMGEWNTMK
                     IISKNKTLK"
     gene            complement(588..1145)
                     /locus_tag="VI413_10440"
     CDS             complement(588..1145)
                     /locus_tag="VI413_10440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915083.1"
                     /translation="MTLREHLDQFYLKYNIPVNGGVDDKTFEVPLPAFTLTLPNFPWR
                     KRMLYIHDLEHILNEQDTTWAGEIFIASWEVSTGYYKNFPIIFFPLWTMAWGFWKYPS
                     TVLRGFRKGFSDKGIARLNMEQEKLLELELPQLQILTLNKRANRSKINYHFRLWGWLL
                     ISQLVFLSPVAASACLLSISFKLLF"
     gene            complement(1147..1875)
                     /gene="pgl"
                     /locus_tag="VI413_10445"
     CDS             complement(1147..1875)
                     /gene="pgl"
                     /locus_tag="VI413_10445"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR01198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HEY6915084.1"
                     /translation="MNPNLHIFETTEETAHAVAEVILVKAKEKNKKSLPFNIALSGGS
                     TPKLLFTLLVNEYADQMPWHILRLFWVDERCVPPTHAESNFGMTYNSLLKHVPIHDYN
                     IFRMLGEDDSEKEAQRYEGLLDAQLVKKNGIPQFDLILLGMGDDGHTASIFPDNMGLL
                     HAEQTVAVAVHPTSGQKRITLTGNVINHAEQVIFLVTGLAKSTVLRQIFKREPDFKNY
                     PASYIHSQCGAASFYLDKAAANEL"
BASE COUNT          598 a          430 c          379 g          618 t
ORIGIN      
        1 ctttgagggt tttattttta ctgataatct tcatcgtgtt ccattcgccc attggttttt
       61 cgtttgaagc ctgcattttc ttcactgtaa acttcaccga atcggtacat tcttttgccc
      121 aaagtccgtt catacaaata atatcacccg ctgcatctgc tttttgctga acctgataac
      181 aaacgggcca aacagtatct tttggttgaa tatgaactaa cacaccactg ttagccggca
      241 cttttgtcca gcgccattcc aaactcaacg tgaaattttt atagcttttc tttgttctca
      301 aataaccgct tgactcacca gtgacagaca aaacgccatc tttcatttta aaaacgtcag
      361 tagcattcaa tttcttatca ttcagcacat aaaaccaatt tgaagcatct ttggccgtaa
      421 aaaactgagg cttcttttga gaaaaagagg tgacggaaat tactaaaaac aatgctgctg
      481 acaatgcaat ttttaaactt gatttcatgt ctgtttgatt cattatgagt attaattact
      541 ttcttactgg cgtcaaaatt agcaaataac tttcactaaa gccaacttca aaataataat
      601 ttgaaggaaa ttgacagtaa gcatgccgaa gcagcaaccg gagatagaaa taccaattgg
      661 ctgattagca accagcccca aagtctgaag tgataattaa ttttagaacg gtttgcacgt
      721 ttattcaacg taagaatttg aagttgaggc aattcaagtt cgagcaattt ttcttgttcc
      781 atgtttaagc gggcaatgcc tttgtctgaa aatcctttgc gaaagccgcg taataccgtc
      841 gaaggatatt tccaaaatcc ccaggccata gtccagagcg gaaaaaaaat tatcggaaaa
      901 tttttgtaat acccggtaga aacttcccac gaagcgataa aaatttcacc tgcccaggtt
      961 gtatcctgtt cattcagaat atgctccaaa tcgtggatat acaacattct tttcctccag
     1021 gggaaattag gtaatgtaag cgtaaaagca ggtagtggca cttcgaatgt tttatcatcg
     1081 actccgccat ttacgggaat attgtatttg aggtaaaatt ggtctaaatg ttcgcgtaaa
     1141 gtcatgctaa agctcgtttg cagcagcttt atccagataa aaagaagctg caccacattg
     1201 ggaatgaata taagaagcag gataattttt aaaatccggt tcgcgcttaa aaatctgtct
     1261 cagaactgtt gattttgcca gtcctgtaac cagaaaaatt acctgttcgg catgattaat
     1321 tacatttccg gtaagcgtaa tccgtttttg gccgcttgta gggtgtacag ccacagccac
     1381 ggtttgttcg gcatgaagca agcccatatt atcaggaaaa atggacgctg tatgtccatc
     1441 atcgcccatt ccgagaagaa ttaaatcaaa ttgcggaatt ccatttttct taacaagctg
     1501 cgcatcgagt aatccctcat aacgctgtgc ttctttttct gaatcatcct cgccaagcat
     1561 ccgaaatata ttgtaatcgt gaatgggaac gtgcttcaac aggctattat aagtcattcc
     1621 aaaattgctc tcggcatgtg ttggcggcac gcaacgctcg tctacccaaa acaaacgaag
     1681 aatatgccac ggcatctggt cggcatattc gtttaccaac aaagtgaaca gcagtttagg
     1741 cgtactaccg ccggacaaag cgatattgaa cggaagcgat tttttgttct tttctttcgc
     1801 tttcaccaaa attacttcag ccacagcatg cgctgtttct tcggtggttt cgaatatgtg
     1861 aagattcgga ttcataatta tttatatttc cctgtaggga caggtcgcga cctatcccta
     1921 caggatatga cggatttatt cagtcttgaa ttttttgaac ggtgcacgcc atttcaattc
     1981 aggattacca aacagagcat ttgcttcttt tggcccccaa gtatt
//
LOCUS       DATDNM010000614         2537 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1678108, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000614 DATDNM010000000
VERSION     DATDNM010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1678108"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..459)
                     /locus_tag="VI413_10450"
     CDS             complement(<1..459)
                     /locus_tag="VI413_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY6915085.1"
                     /translation="MAFKSKAAYLPGNSTVVFKDVEFPTPGHGEVLLKVKSSTICGSD
                     IRAIYREHLGKGPEGYQNKICGHEPAGQIIACGPGMKRFKEGDRVVVYHISGCGCCND
                     CRRGYMISCKSESRAAYGWQRDGGMAEYMIAEEKDLVLLPDSLTYTDGAQI"
     gene            complement(492..926)
                     /gene="fucU"
                     /locus_tag="VI413_10455"
     CDS             complement(492..926)
                     /gene="fucU"
                     /locus_tag="VI413_10455"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016854 - racemase and epimerase activity
                     [Evidence IEA];
                     GO_function: GO:0042806 - fucose binding [Evidence IEA];
                     GO_process: GO:0042354 - L-fucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HEY6915086.1"
                     /translation="MLKGISPLISPELLAVLARMGHGEEIILADAHFPAESFNGRVLR
                     ADGLRIPDLLAAILPLFELDAYVPHPLTMMAAVPGDTLDPKVEEAYLKSIHISNPDVP
                     AIERIDRFAFYDRAKTAFAVVMTGETAKYGNILLKKGVTPIN"
     gene            complement(994..2004)
                     /locus_tag="VI413_10460"
     CDS             complement(994..2004)
                     /locus_tag="VI413_10460"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY6915087.1"
                     /translation="MKKRITIKDIAKELNVHHSTVSRALRNDPRVNVATRDQVLAYAR
                     EHEYQTNMNAVQLRGTSNNAIALIVPNINHTFFSDIISELTNLAYQKGYVISVFQTNE
                     KYQLEKEIVNTIIQHNFAGVIVSKAKDTINSEHFALLNKFGIPVVFFDRICDDLQTPR
                     VIINNFEITAEATEYLIKKGYRSIAHLTGTTSNNVFRDRQNGYESMIDKYKMEYHQSI
                     AIEDDFSVEIGKRIFAKLQNLPVKPDAIISSSVHIAIGIMLEARKSGVRIPQDLGLIT
                     FGSLLSSEIIEPRITYVDQPETEIAQLSFDLLEKMINREIPIGELIEKTVKAQIIFKE
                     SC"
     gene            complement(2103..>2537)
                     /locus_tag="VI413_10465"
     CDS             complement(2103..>2537)
                     /locus_tag="VI413_10465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915088.1"
                     /translation="DSLSIDSTGSLIGMGQYLFLEDIYVPSIQTTLPAGTYTINSSGL
                     PYTVSPGKNDTVDTLVFPVGATISYYEENTSKSKLKFITEGTFTLTKSKLNSIYTIVC
                     NFKTDDKKELKGTFTGELRYSDESLQLQRSSPRKLIHSISHF"
BASE COUNT          721 a          508 c          513 g          795 t
ORIGIN      
        1 aatctgagca ccatcggtat aagtcaggct atctggcaat aatacaaggt ctttttcttc
       61 ggcaatcatg tattcggcca taccgccatc gcgttgccag ccataagccg cacgcgattc
      121 gcttttgcac gaaatcatgt atccgcgacg acaatcgttg caacatccgc aacccgaaat
      181 gtggtaaact accacacggt cgccttcttt gaaacgtttc atgcctggtc cgcaagcgat
      241 aatttgtccg gcaggttcgt gaccacaaat tttattttgg tatccttcag gaccttttcc
      301 aaggtgctca cgatagatag cgcgaatgtc gctaccgcaa atagttgatg attttacttt
      361 gagcagaact tctccatgtc cgggtgttgg aaattctaca tctttaaaaa ctacggtgct
      421 gtttcccggt aaataagcag cttttgattt aaatgccatt gttgtgatta tgaattgtga
      481 attattaatt atcagttgat tggtgtcact ccttttttaa gcagaatatt tccatatttg
      541 gctgtttcac cggtcatgac tactgcgaaa gcagtttttg cacggtcgta aaacgcaaaa
      601 cgatcgatac gttcaatagc tggtacatcc ggattggaaa tgtgaatgct tttcaaataa
      661 gcctcttcca ctttcgggtc tagcgtatcg cccggtacgg cagccatcat agttaacgga
      721 tgtggaacat acgcatcgag ttcaaaaagt ggcagaattg ctgcgagcaa atccgggatg
      781 cgaagaccat cggcacgcaa cacacgacca ttgaaggatt ctgctggaaa atgggcatcg
      841 gccagaatga tttcctcgcc atgacccatg cgagccaaaa ctgccagcag ttcgggacta
      901 attagtggtg aaattccttt aagcataaga ttttgtttta aaagcacacg tgtgcattat
      961 tatttgaatt gtttgaattt cgattaaaat aaactagcaa gattctttga aaataatttg
     1021 agcttttacc gttttctcga ttaattcgcc aatgggaatt tcccgattta tcattttttc
     1081 gagcaagtca aatgacaatt gggcaatttc agtttccggc tgatcgacat aagttatcct
     1141 cggttcaata atttctgacg acaacaaact gccaaaggtg ataagcccca aatcttgcgg
     1201 aatgcgaaca ccgcttttgc gggcttcgag cattattcca atggcaatat gcacagacga
     1261 tgatataatg gcatcgggtt taaccggcaa attctgcaat ttcgcaaaga ttctttttcc
     1321 aatttccacg ctgaaatcat cttcaattgc aatggattga tgatactcca ttttatattt
     1381 gtcaatcatc gactcgtaac cattttgccg gtcgcggaac acattattac tggtagttcc
     1441 ggtaagatga gcaattgacc tgtatccttt ttttatcaga tattctgttg cttcggcggt
     1501 aatttcaaaa ttattgataa tgactctggg agtttggagg tcgtcacaaa ttcggtcgaa
     1561 aaaaaccacc gggatgccga atttattcaa caaagcgaaa tgttcactat taattgtgtc
     1621 tttggctttg gaaacaataa ccccagcaaa attatgttga ataatggtat tgacaatttc
     1681 tttttcgagc tggtatttct cgttggtttg aaaaaccgaa ataacgtagc ctttttgata
     1741 agcaaggttg gtcaactcac tgattatatc tgaaaagaat gtgtggttga tgttaggaac
     1801 gataagcgcg atggcattat tgctggttcc gcgcaactga acggcgttca tattagtctg
     1861 atattcatgc tcacgagcat aagccagcac ctggtcgcgt gtcgcaacat tcacccgtgg
     1921 atcattgcgc aaagcgcgcg acacggtaga atgatgcaca ttcagttctt tggctatgtc
     1981 ttttatagtg attctttttt tcattccaca gaaaatacaa acgtgtgcaa agataatata
     2041 tttcataaaa aaaggcactc tttgtgcctt ttttttgatt atttaactcc tgattaacgt
     2101 tttcagaaat gacttatgct atgaatcaat ttgcggggtg aactgcgttg aagttgcaat
     2161 gactcgtcag aatatctcaa ttctccggta aaagtacctt tcaattcttt tttgtcatct
     2221 gttttgaaat tgcaaacaat cgtataaata ctattcaatt tagatttagt aagagtgaaa
     2281 gtgccttcag ttataaactt tagttttgat ttggaagtat tttcttcgta gtacgaaatt
     2341 gttgctccaa caggaaaaac cagtgtgtca acagtatcat ttttacccgg cgaaacagta
     2401 taaggcaatc cggatgaatt aatggtgtaa gttccggcag gcaatgtagt ttgtatcgaa
     2461 ggaacataaa tatcttccaa gaacagatat tgtcccattc cgataagact tccggtgcta
     2521 tcaatactta atgaatc
//
LOCUS       DATDNM010000615         4115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_609787, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000615 DATDNM010000000
VERSION     DATDNM010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4115
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_609787"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1344)
                     /locus_tag="VI413_10470"
     CDS             complement(<1..1344)
                     /locus_tag="VI413_10470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008648253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEY6915089.1"
                     /translation="MNSLQNLNRAADNIRILAASAVEKAKSGHPGGAMGGADFINVLY
                     SEFLEYDPQNPTWEGRDRMFLDPGHMSPMLYSVLACTGKYTMEELGQFRQWGSPTPGH
                     PEVDIMRGVENTSGPLGQGHTYAVGAAIAAKFLKARFGEVMSQTIYTFISDGGIQEEI
                     SQGAGRIAGHLGLNNLIMFYDSNDIQLSTETKEVTSENVAQKYLAWGWKVIEINGNDA
                     VEIRTALKEAKAETTHPTLIIGKTIMGKGALKADGSSFERQCATHGMPLSEGGASYAE
                     SIKNLGGNPENPFVIFEETKALYAKRAEELKDIVAKKQAAKAEWAKSNPELATKLDFF
                     FSGKTNMNWDAVVQKPGQATRAASATVLGELAKQVENMIVTSADLSNSDKTDGFLKNT
                     KAFAKNDFAGAFLQAGVSELTMAAISIGMSLHGGVIAACATFFVFSDYMKPAVRMA"
     gene            complement(1375..2022)
                     /locus_tag="VI413_10475"
     CDS             complement(1375..2022)
                     /locus_tag="VI413_10475"
                     /inference="COORDINATES: protein motif:HMM:NF039966.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6048 family protein"
                     /protein_id="HEY6915090.1"
                     /translation="MTAYTVRAQKKIIESADTVHVALYNGFTIQADIASLATSALSKG
                     ETYSYEAALQVDLKHKYYPILELGVAGANKTTADLIGFTTNAPFGRIGVDFNILKKKK
                     DSKPTNNMFLVGLRVGMSNFKYRITNATISNDYWGGNEVVDYSNIPATTKVWWEITAG
                     VRVEVIKNIYMGWTVRTKNLLTPDTEGQVAPWYIPGFGISASGNWGLNYTIGYHF"
     gene            complement(2036..2521)
                     /locus_tag="VI413_10480"
     CDS             complement(2036..2521)
                     /locus_tag="VI413_10480"
                     /inference="COORDINATES: protein motif:HMM:NF040109.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6452 family protein"
                     /protein_id="HEY6915091.1"
                     /translation="MKHIINIILLLAILIAVSCGNDEQCRKDRYVKMQLGIYHVTYNA
                     VSKTRTVTYLSIDSLTAKGIGVDSILYKNTKRISSITLPLNKLDTVSKFQVTFNNITD
                     TVTILHTNYDTYLSLECGCIKTHTIDSVITTNHFLDSVSISIHDVNTSTSAKEHIKLY
                     N"
     gene            complement(2551..3069)
                     /locus_tag="VI413_10485"
     CDS             complement(2551..3069)
                     /locus_tag="VI413_10485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915092.1"
                     /translation="METMDILKIVLPALLVLLTAYLLIDKLLRNEEKRRNFELRKTSS
                     STITPIRLRAYERLMLVLERTTPATLILNVAKPGMTNLEFHAQLLASVRQEFSHNLSQ
                     QIYVSDEAWNYIRGAQESLLQLINSCAAKCNPNDSAAVLAELIIHVYGVTEQPPTELA
                     IDKLKKEVRTYF"
     gene            complement(3070..3438)
                     /locus_tag="VI413_10490"
     CDS             complement(3070..3438)
                     /locus_tag="VI413_10490"
                     /inference="COORDINATES: protein motif:HMM:NF014677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF190 domain-containing protein"
                     /protein_id="HEY6915093.1"
                     /translation="MSFSEKSTLKICACATDKIGGNLLYEYLVSMANEQGITGTTVYR
                     GIKGFDKNSIFEKLCFWKPAKKCPVIIEMIDKTEVLEEFFKTIETDLRQIPNGCLVTL
                     NPIEVKIQKEGNKNQIDQKN"
     gene            complement(3616..>4115)
                     /locus_tag="VI413_10495"
     CDS             complement(3616..>4115)
                     /locus_tag="VI413_10495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6915094.1"
                     /translation="DMNCGLKAYRQEVVKNIEVYGEMHRYIPFLAKNAGFTNIGEKVV
                     EHRKRQFGETKFGLNRFVNGYLDLLSLWFLSKFGKKPMHFFGLYGSLMFLLGFLAVVV
                     VGVNKLIAIFEHVKAPLVTDSPYFYLAILAMIVGTQLFLAGFLGEIVARNSSERNNYQ
                     IEKEI"
BASE COUNT         1148 a          858 c          777 g         1332 t
ORIGIN      
        1 agccatacgt acagctggtt tcatgtagtc ggagaataca aagaatgtag cacatgcagc
       61 aatcacacca ccgtgcaggc tcataccaat actgatagca gccatagtca attcacttac
      121 accggcctgt aaaaatgcac ctgcgaaatc gttctttgca aatgctttcg tatttttcag
      181 gaagccgtca gttttgtctg aatttgacaa gtcggcactg gtaacaatca tgttttccac
      241 ttgttttgct aattcgccca acacagttgc cgaagcagca cgggtagcct gaccaggttt
      301 ttgcaccact gcatcccagt tcatatttgt ttttccggag aagaagaagt caagttttgt
      361 agctaattcc ggatttgatt tcgcccattc agctttagct gcttgtttct tagcaacaat
      421 atctttcaat tcctctgcac gtttagcata caatgctttt gtttcttcga aaattacaaa
      481 aggattttcc ggatttccac ccaggttttt gatactttca gcataagaag caccaccttc
      541 gctcaaaggc ataccgtgag ttgcgcattg gcgttcgaag cttgaaccat cagctttcaa
      601 agcaccttta cccataattg ttttaccaat gataagggtt ggatgtgtag tttctgcttt
      661 ggcttctttc agggctgtgc gaatttctac agcatcattt ccattgattt caatcacttt
      721 ccaaccccag gcaaggtatt tctgagctac attttcgctg gttacttctt ttgtttcagt
      781 agaaagttgg atgtcgtttg aatcgtagaa cataatcagg ttattcaatc caaggtgacc
      841 tgcaatacgt cctgcaccct gagagatttc ttcctgtata ccaccgtcag aaatgaaagt
      901 gtatatcgtc tggctcatta cttcaccaaa acgggctttc aaaaatttag cagcaatagc
      961 agcaccaact gcataagtat ggccttgtcc gagtggacca gaggtgtttt caacaccgcg
     1021 cataatgtct acttcaggat ggcccggagt tgggcttccc cattgacgga actgacccaa
     1081 ttcttccatg gtgtatttgc ctgtgcaggc aagtacggaa tataacattg gtgacatgtg
     1141 tcccggatca aggaacatac ggtcgcgacc ttcccaggtt gggttttgtg gatcatattc
     1201 cagaaattcg gaataaagta cgttaataaa atctgctcca cccatggcac cacccgggtg
     1261 tcctgatttt gctttctcaa ctgccgatgc agccaggata cggatattgt ccgctgcacg
     1321 gtttaagttc tgtaatgaat tcataaattt attaattggt tgttaattgg ttttttaaaa
     1381 atggtaacct atcgtataat taagccccca gttgcctgaa gcacttatgc caaatcccgg
     1441 aatataccag ggtgcaactt gtccttctgt gtcgggagtc aatagatttt ttgtgcggac
     1501 tgtccagccc atatatatgt tttttattac ttcaacacgc actcctgctg taatttccca
     1561 ccaaacttta gtagtggcag gtatatttga atagtctact acttcattac caccccagta
     1621 gtcattggaa atagttgcat ttgttattct gtatttgaag ttcgacattc ctactcttaa
     1681 ccctactaag aacatgttgt tcgttggttt tgaatctttt ttctttttta ggatattaaa
     1741 gtcaacaccg attcgtccaa atggtgcatt tgtggtaaag ccaataaggt cggcagttgt
     1801 tttgttggca cctgcgactc ccagctccag aataggatag tatttgtgct tcagatcaac
     1861 ctgaagagcg gcttcgtatg aatatgtttc accttttgac agcgccgagg ttgccagcga
     1921 tgcaatatca gcctgaattg taaaaccatt atacaatgcg acatgaactg tatcggccga
     1981 ttcaatgatt ttcttctgtg cccggactgt atatgcagtc atacacagca aaatactaat
     2041 tatataattt aatatgttct ttggcactgg ttgaggtgtt tacatcgtgg attgagatac
     2101 ttactgaatc gagaaaatga ttggttgtaa ttaccgaatc gatggtatgc gtttttatgc
     2161 aaccacattc aagcgataaa taagtatcgt agttggtatg caaaatagtt actgtatccg
     2221 taatattatt gaatgttacc tgaaattttg atacagtatc aagtttgttt agtggtaagg
     2281 ttatactgga tattcttttt gtatttttgt ataaaatgga atcaactcca atcccttttg
     2341 ctgtcagact atcaatactc aggtaggtta cagttctggt tttacttacc gcgttatatg
     2401 taacatggta aatgccaagc tgcattttta catatctgtc tttcctgcat tgctcgtcgt
     2461 tgccgcatga cacagcaatc aggatagcaa gtaaaagaat tatgtttatt atgtgtttca
     2521 tttaaaatat attgattgaa tgctgaaact ttaaaaatag gttcttactt ctttcttgag
     2581 cttgtctatt gctaattctg tcgggggctg ttcagtaact ccgtaaacat gaataataag
     2641 ttcggctaat acggctgctg aatcattagg gttgcatttg gcagcacagg agtttattaa
     2701 ttgtagcagg ctttcctgag ctccacggat gtaattccat gcttcatcac tgacataaat
     2761 ttgctgtgaa aggttatgcg aaaattcctg acgaacactg gctaatagct gtgcatgaaa
     2821 ctcaaggttt gtcattccgg gttttgcgac gttcagaatc agggtagcag gagttgtacg
     2881 ttccaacacc aacataaggc gctcgtaagc cctgagcctg ataggagtaa tggttgatga
     2941 actggttttc cgaagctcaa aattgcgccg tttctcttca ttgcgaagca atttgtcaat
     3001 cagcaaatag gctgtcagca aaacaagtaa tgcgggtagt actattttaa gaatatccat
     3061 tgtttccatt tagtttttct ggtctatctg gtttttattt ccttctttct gaatttttac
     3121 ctcaatcggg tttagagtaa ccaaacagcc attgggaatt tgacgtaaat cagtttcaat
     3181 tgttttgaaa aattcctcca gaacttcagt tttgtcgatc atctcaataa ttacagggca
     3241 ttttttagct ggtttccaga aacataactt ctcaaatatg ctgtttttat caaaaccctt
     3301 tattccccgg taaactgtgg tacctgtaat tccttgttca tttgccatcg aaaccaaata
     3361 ttcataaagc agattacccc cgattttgtc ggtagcacaa gcgcaaatct ttagagtact
     3421 tttttcagaa aaactcatat ttacaataaa aattaggtgt aaggtcgttc ttaaaaaaca
     3481 gcaaaagaca tgcaaacaat aatgtttttg ccggaaaaag cattaaagct atatttctcc
     3541 aatacggctc atactaacag acgttctaca ggcaaaatta tctcactttc atttctcggt
     3601 tgctcaaaag gaaaattaaa tttccttttc aatctggtaa ttatttcgct cactcgaatt
     3661 ccttgcaact atttctccaa ggaatcctgc cagaaaaagt tgcgtaccta ctatcattgc
     3721 caaaattgcc agataaaagt aagggctgtc ggtaaccagt ggagctttaa cgtgttcgaa
     3781 gatagcaatc aatttgttca caccaactac aactacagct aaaaatccca gcaaaaacat
     3841 taaacttccg tacaatccga aaaagtgcat gggttttttg ccgaatttag acagaaacca
     3901 caaactcaac aaatccagat atccattcac aaaccggttc aaaccaaact tggtttcgcc
     3961 aaactgacgc ttgcgatgtt ccaccacttt ttcgccaata ttggtaaaac cggcattttt
     4021 tgctaaaaat ggtatgtacc ggtgcatttc gccataaact tcaatgtttt taaccacttc
     4081 ttgtctgtag gctttcaaac cgcaattcat gtcat
//
LOCUS       DATDNM010000616         2030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_823384, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000616 DATDNM010000000
VERSION     DATDNM010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_823384"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VI413_10500"
     CDS             <1..364
                     /locus_tag="VI413_10500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008153958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF349 domain-containing protein"
                     /protein_id="HEY6915095.1"
                     /translation="GHVPFKEKDKVYKEYRDAVDKQFEALNVDSSNRRMDNFRSNVKD
                     MVGKGENKLYREREKLVRAYEHMKSEIATYENNIGFFSSNSKKGGGLIKEMERKIEAL
                     KEESKLIEQKINLIDENI"
     gene            complement(436..1761)
                     /locus_tag="VI413_10505"
     CDS             complement(436..1761)
                     /locus_tag="VI413_10505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007753198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6915096.1"
                     /translation="MKNNSLQIDNTLRSMGIESLNAMQLATLEANEKDQDIILLSPTG
                     SGKTLAYLLPVLMSLNPEIQKVQALILAPTRELAQQIEQVWRSMSTGYKVNTCFGGRP
                     SNGEKRELAIPPAVLIGTPGRLQDHIERGNVEVDDIRTLVLDEFDKSLEMGFTEQMES
                     IISRIPSIQKRILTSATDAVTIPDFTGISNPVKLDFSEKDNALKGLKTFLVKGDTNDK
                     FDLLYRLLCHLGNDSTLVFCNQRDAVEKVSAYLTQRKLANEFFHGKLEQPERERALSK
                     FRNGSCSAFISTDLASRGLDIPEIKNVIHFDIPVRLDEYVHRNGRTARMEAEGSAFSL
                     LAVNEELPGFITPNPAPYSLPLLTSAPPKSEWATIYIGKGKKDKLSKMDVVGFMFKKG
                     QLAREELGMVEVKDYYSYVAVKLNKVKEVLRLVSNEKIKNMKTRIELAE"
BASE COUNT          641 a          434 c          364 g          591 t
ORIGIN      
        1 aggacacgtt cctttcaagg aaaaagataa agtgtacaaa gaataccgcg atgctgtaga
       61 caaacaattt gaagcattga acgtagattc ttctaaccgc cgcatggaca atttccgcag
      121 taatgtaaaa gatatggttg gaaaaggcga aaacaagtta taccgcgaac gcgaaaagct
      181 ggtacgtgcc tacgaacaca tgaaatctga aattgccact tacgaaaaca atatcggttt
      241 cttctcttcg aattcgaaga aaggcggagg tttgattaaa gaaatggaac gcaaaattga
      301 agcattaaaa gaagaaagta agctgataga acaaaaaatt aatctgattg acgaaaatat
      361 ttaatcggct atatcatatc acaaaaaaaa tcctcaacca aaacggttga ggattttttt
      421 attaggtcta ctctcctatt ctgccaattc tatcctggtc ttcatatttt tgattttctc
      481 attgctgacc aagcgaagta cttcttttac cttatttaat ttaacggcca cgtatgaata
      541 ataatccttc acctccacca ttcccagttc ttcccgggct aattgccctt tcttaaacat
      601 aaaaccgacc acgtccattt tactcagctt atctttcttt ccttttccaa tataaattgt
      661 ggcccattca gattttggag gcgccgaagt cagtaaaggc aacgaataag gagctggatt
      721 tggcgtaata aaaccaggca actcttcgtt gacagccaac aaagaaaaag cagaaccttc
      781 ggcttccata cgtgccgtgc gcccgttacg atgaacgtat tcatccaaac gtacaggaat
      841 atcaaaatga attacatttt ttatttccgg aatatcaagt ccgcgtgaag ccagatcggt
      901 agaaataaac gcactgcaac tgccatttcg gaatttggaa agcgcccgtt cacgttcagg
      961 ttgctccagc ttgccatgaa aaaactcatt agccagttta cgttgtgtta aatatgcgct
     1021 caccttctcc acagcatctc gctgattaca aaaaacaagg gtagaatcat tacccaaatg
     1081 acacaacaaa cggtaaagca aatcaaattt atcattagta tcccctttaa ccagaaatgt
     1141 ttttaatccc ttcaaggcat tgtctttttc agagaaatca agtttgacag gattgctgat
     1201 tcctgtaaaa tcaggaatag ttacagcatc tgtagcagaa gtaagaattc gtttttgtat
     1261 agacggaata cgactaatga tagactccat ttgttctgta aagcccattt ccagtgattt
     1321 atcaaattca tcgagtacta aagtccgaat atcgtccact tccacatttc cacgttcaat
     1381 atgatcttgc aagcgtccgg gtgtaccaat aagcacggca ggcggaatag ccagttcgcg
     1441 cttttcacca ttagacggac ggccaccaaa acaagtattt actttgtaac cggtgctcat
     1501 actgcgccac acttgctcta tttgttgagc caactcacgc gtaggagcca aaatcagagc
     1561 ttgtactttc tgaatttctg gattcaggct cattaacaca ggtaaaaggt acgcgagtgt
     1621 ttttccagaa ccggtgggtg ataaaaggat tatgtcctga tctttttcat ttgcttcaag
     1681 cgtagccaac tgcatggcgt taagcgattc gatacccatg cttctcagcg tgttatcaat
     1741 ttgtagagaa ttatttttca tgctgcaaag atagttcaaa tttatatgga tagttactat
     1801 caggtaaaaa tcagcatcca aagcttttaa taatctactt attcggcaaa caatctattc
     1861 ttttctgttg ttaatcaaaa tatgaattca caatctacaa atttagagat taagcggctt
     1921 ttggacagtc gcgttctcca atacaatagc cttgatttta tccactccga ccctattcaa
     1981 attccacatc gcttttcgcg aaaagaagac atcgaaattg caggttttct
//
LOCUS       DATDNM010000617         2332 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1784311, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000617 DATDNM010000000
VERSION     DATDNM010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2332
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1784311"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..459)
                     /locus_tag="VI413_10510"
     CDS             complement(19..459)
                     /locus_tag="VI413_10510"
                     /inference="COORDINATES: protein motif:HMM:NF033749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HEY6915097.1"
                     /translation="METIKNSRHTWNDSYLVHIPMIDKQHIKFFKIFDQLAALSNSED
                     SYYQLSEIIDELDKYTQIHFQTEEALMRKAKTPDYDLHLFQHSIFRKKIEEFKIAYSY
                     HNSVLQQQMVNFMRKWFLMHISDVDGKYADSVHEFMNEKGWAIE"
     gene            complement(491..1921)
                     /locus_tag="VI413_10515"
     CDS             complement(491..1921)
                     /locus_tag="VI413_10515"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6915098.1"
                     /translation="MNDFNWIDIFNSIFFIYACILFGIYIFNAVLSILELRKYTSKNK
                     YVDYKSMLSFQKLPSVSVIAPAYNEERTIVDNIECLLSLHYMDFEIIIVNDGSTDKTL
                     DKITKHFDLVKVNKVYELEIECAPIKAIYQSRNPAYYNLVVVDKINGGKADSLNAGVN
                     ISEKDLFMAIDVDCIIESDAILKMVKPFIDDNKRIVIASGGVIRIANSSQISEGRIVK
                     VNYPKNFWAKFQVLEYFRAFTLGRMAWSKLNGLLIISGAFGLFDRKRVIKVGGYDKSS
                     VGEDLELVVRLRRYMHEVEKKKYRVAFIPDPLCWTEVPESYAMLSRQRNRWTRGAIDT
                     IIKHRRMFLNPKYGLIGMMSFPNWVFFEWLGPIIQSIGLIYFAFLLIFGLVNYQVFLT
                     LLIFVLSFSVMYSLFAIFFEAYTFNKYKGVSYLSQAISFIFLEMFIYQPLNMFFSLSG
                     HIDFYFRKEDKNKWGDMTRKGFTKFN"
     gene            complement(1933..>2332)
                     /locus_tag="VI413_10520"
     CDS             complement(1933..>2332)
                     /locus_tag="VI413_10520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915099.1"
                     /translation="LGIMLARFNKQYIFKNVILTKIGNSDNLLNEEAFLALTALAESK
                     DDYKFLIDNFDLATEKAQLEIIQTIASSTEETEAIQFLNWVVENKHYKQKVEALTLLL
                     DLDLDSITRFKKSEKKLIRKSCLQILDFNI"
BASE COUNT          750 a          418 c          347 g          817 t
ORIGIN      
        1 ttccagcggg ctttctattt attctattgc ccaacctttt tcattcataa attcatggac
       61 agaatcggca tattttccat ccacatccga aatgtgcatt agaaaccatt ttcgcataaa
      121 attaaccatc tgttgctgta aaacagaatt atggtaacta tatgcgattt taaattcttc
      181 aatttttttt cgaaaaatag aatgttggaa tagatgtaaa tcgtaatcgg gagtttttgc
      241 tttgcgcatc aaggcttctt ctgtttggaa atgaatttga gtgtatttgt ctaattcatc
      301 aatgatttca gagagctgat aataactgtc ttcgctgtta cttaatgctg caagttggtc
      361 aaaaatttta aaaaacttta tgtgttgctt gtctatcatt ggaatgtgta ccagataaga
      421 gtcattccaa gtgtgccggg agtttttaat cgtttccata ttagggttta tttgaaatag
      481 ttaatagttg tcagttaaat tttgtaaaac cttttcgtgt catatctccc catttatttt
      541 tatcctcctt tctaaaatag aaatcaatat gaccgcttaa tgaaaaaaac atatttaaag
      601 gctggtaaat aaacatttct aaaaatataa atgatatggc ctggcttaaa tagctgacac
      661 ccttgtattt gttgaaagta tatgcttcga agaaaatcgc aaatagagaa tacattacag
      721 agaatgacaa tacgaaaatt aatagagtca gaaagacctg ataattcaca agtccaaaaa
      781 ttaataagaa tgcaaaatag atgagtccta tagattgtat aattggaccc aaccactcaa
      841 aaaataccca gtttggaaaa ctcatcattc cgattaatcc atactttgga tttaagaaca
      901 ttctcctgtg tttaataata gtgtcaattg cgcctcgagt ccaacgattc ctttggcgtg
      961 acaacattgc ataggactcg ggaacctcag tccaacacag tgggtcagga ataaatgcca
     1021 ccctatactt tttcttttct acttcgtgca tatatctgcg cagccttact accaattcaa
     1081 gatcttcccc aacactgctt ttgtcatatc ctcctacttt tattactctt tttcgatcaa
     1141 aaaggccaaa tgcaccagaa atgattaata aaccattcaa tttactccag gccattcgtc
     1201 ccaacgtaaa tgcgcggaaa tattccagta cctgaaattt agcccaaaag tttttcggat
     1261 aatttacttt cacaattctt ccttcagaaa tctgacttga attggcaata cgaataacac
     1321 cgcctgaagc aataacaatt cgtttattgt catcgataaa tggcttaacc atttttaaaa
     1381 ttgcatccga ttcaataatg caatcaacat cgattgccat aaataaatct ttttccgaaa
     1441 tatttactcc tgcattcaaa gaatctgctt tcccaccatt tattttatca acaaccacca
     1501 gattgtaata tgccgggttt cgggattggt agattgcttt tataggtgca cattctatct
     1561 ctaattcata aaccttgttt acttttacta aatcgaaatg tttggttatt ttatctaaag
     1621 tcttgtcggt acttccatca tttacaataa taatttcaaa atccatgtaa tgcagtgata
     1681 ataggcattc tatattgtct acgattgttc tttcttcatt gtaagcaggt gcaataacag
     1741 aaacagaagg taatttttga aatgatagca tcgatttata atcaacgtat ttattcttac
     1801 tcgtgtattt gcgcaactct aaaattgata gaactgcatt gaaaatataa atcccaaata
     1861 agatacaagc atagatgaag aagatgctgt taaatatatc tatccagtta aaatcattca
     1921 tagtgctata ttttatatgt taaagtcgag aatttgtaaa catgatttac gaatcagttt
     1981 tttctcggat tttttgaatc gtgtaattga gtctaagtct aaatccaata gtagtgttag
     2041 tgcttcaact ttttgtttat aatgtttgtt ctctactacc caatttaaaa actggatagc
     2101 ctctgtctct tctgtagagc ttgcaatagt ttgaataatc tctaattgag ctttctccgt
     2161 tgcgagatcg aaattatcaa ttaaaaattt gtagtcatct ttactttctg ccagtgcagt
     2221 cagtgcaaga aaggcttcct catttaataa attgtcacta ttaccaattt tagtcagaat
     2281 tacattttta aaaatatatt gtttgttaaa tctagccaac attatcccga gt
//
LOCUS       DATDNM010000618         9373 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1252443, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000618 DATDNM010000000
VERSION     DATDNM010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 9373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9373
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1252443"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3409)
                     /locus_tag="VI413_10525"
     CDS             complement(<1..3409)
                     /locus_tag="VI413_10525"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA14 domain-containing protein"
                     /protein_id="HEY6915100.1"
                     /translation="MRKHFIALLFLSVFSVSVMAQFTPKVTPIKTPWTDKVDKNNPLP
                     EYPRPQLVRTDWMNLNGYWEFKSGAAGDVVPVNQSLGGQIVVPFAPEATLSGVVKHDE
                     RVWYRKLFTVPTAWTGKRVLIHFGAIDWESEVYVNGVSMGIHKGGYDEITYDITDKLI
                     GTGQQEIIVRVYDPTRDFGQPRGKQTTAPGGIMYTCVTGIWQTVWLEPVAQQNIATIK
                     ITPDIDNNVLKLTVNSPNGTGLTVKATAKDASASVGSVSGAANTELIIPVPNAKLWSP
                     ESPFLYDLDIKLMSGNVVVDSVSSYFGMRKITMVRETPTPQLYLNNKAVYMMGPLDQG
                     FWPDGIYTAPTDEALKSDIEAEKALGFNMVRKHIKVEPQRWYYWADKLGIMVWQDMPS
                     PNSYDAPSGMAIEKAQFDTELTRMINTHYNSPSIVTWVIFNEWQAEFESPRHTLMVRA
                     LDPTRLINQGSGHERAEEQCDMFDVHYYPHPSCDISTTHAVVCGEYGGIGLAVSGHLW
                     STAGNPYGNAGNADGLVNIYSGYLDMLLKFKKDRGMSAAVYTEITDVESEINGFMTYD
                     RTWKVDPDRIKVLNEKIINDNVSSAADVLPTSNVVAQTWKYTTNTPASTWNTPTFDDS
                     SWASAVGGFGSLKDANGNQIGTLWNTTTIWIRKTFTVGNLTPTQIKNMKMSVFHDENC
                     VIYINGELAASLSGYTTGYVNVEISTAAKNAIKINDVNTIAIRCIQTTGGQYIDAGLS
                     YMTLTSDDDNNLKGAVTAYSDCDYANKAARIDVGEYTLSKLQALGLANDDISSLKIAS
                     GFKVQLFADDNFAGSMVELTSSSACLSSISWDNKVSSLKVIPNGVTGLKGIFTIQNKK
                     SGMNMEVYNSGLTNGTNVQQNTATQATNQQFIVTHQGNGVYKIMGVQSLKLLDVNDLQ
                     IVDSANVQIWQDGSSPDQQFILVDAGDSCYKMVALYSGRVIDVALGSTSARANVQTYV
                     DNNQESAQWKFTPATVSEDGDGLLCRMYNGMNFENMAGITKHPKVDFNWGNGNADPML
                     KADKTSMRWTGQIKPNYSEKYTFYIDSDNGRRLWINNQLVIDKWISDWGTEYSGTIDL
                     EAGKKYDIKVEYFEEIGGASIRLRWSCPSQIKQIVPQANLFSNSIPTV"
     gene            complement(3733..4581)
                     /locus_tag="VI413_10530"
     CDS             complement(3733..4581)
                     /locus_tag="VI413_10530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915101.1"
                     /translation="MKTPIITSLLLMLCLGISAQEAFVSNKLVKVWSTPAGLNVPESS
                     HYNPSDKTIYVSNIVGKHNVKDGEAYISKLNTKGEFIEKEWVKGLNAPKGISCTKTKL
                     YVTDIDRVVEISLSTGKILKEYRNAKSKSLNDVCVAANGRVYVSDSEGDCIFYVGKDS
                     LEVLIQSKNLGNMNGIYASGNLLYLGSKGNFISVDQKTKAIAVLQEKVGYLDGIEQIA
                     PTVFVTSDWSGHVQLIRVGKGVEKLLDTTPLKINAADLGYIPSQKLLLVPTFLDNKVV
                     AYKLNF"
     gene            4715..5257
                     /locus_tag="VI413_10535"
     CDS             4715..5257
                     /locus_tag="VI413_10535"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEY6915102.1"
                     /translation="MINFLQIGTRIRNLRLTQNRTLQDIANACDLSKSMVSKIETNAV
                     VPSVATLVKIAKSLGTNVSVLMEENDTQSSVMISSEKANDNITQTDRGYHIFPFASEF
                     KDKKMQPFLFVANKGEVKEHHLTHEGEEFIHVLEGEMKLQVGTLEYSLKQGDSVYFNS
                     LEQHGIMPVSDTVKYINIFV"
     gene            5372..7048
                     /locus_tag="VI413_10540"
     CDS             5372..7048
                     /locus_tag="VI413_10540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009130807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-xylosidase"
                     /protein_id="HEY6915103.1"
                     /translation="MKFNILLLSILCSLSLFSQNNAIKINVDLTKEKGPMKPIWAWFG
                     YDEPNYTYMKDGKKLLSEIAALSPVPVYVRAHNLMNTGDGTAALKWGSTNMYTEDKDG
                     NPIYNWTIVDSIFDTYIQRGMKPLAQIGFMPEALSTHPQPYQHSWKPGVKYSEIETGW
                     AYPPKDYNKWAELIYQWVQHSVNRYGKSEVESWYWELWNEPNGAYLITPNVFAEYCKM
                     YDYASDAVKRALPTARIGGPHVTGGATKFLRNFITHCLKDSNAVTGKIGAPLDFVAFH
                     AKGSPRVVNDIVRMGMMNQLRDMNDHFKVIASFPEIKNIPVIIGESDPEGCAACGMQT
                     DPQNAYRNGTMYSSYTAASIAREYDLAEYHGVNLIGAVNWSFEFENQPWFFGFRDLAT
                     NGVDKPVLNVFRMLGMMGGKRVDVSGDLAYDFKAIRDSSVRGVRTDINALSAKTTDNT
                     TILVWNYHDDDIQGEGSLVNLSIKGLKNGKATLYHYRIDAEHSNSYEVWKKMGSPQQP
                     TEKQYKVLEKSGQLELLSKPRKVNIKNSELTVNFQLPRQAVSFLKIEYKN"
     gene            7055..8683
                     /locus_tag="VI413_10545"
     CDS             7055..8683
                     /locus_tag="VI413_10545"
                     /inference="COORDINATES: protein motif:HMM:NF015948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF362 domain-containing protein"
                     /protein_id="HEY6915104.1"
                     /translation="MNKIKTFFFKICPKSGRIRGLRTDSMYHKLIFPIVGLVALVWVI
                     VRVAPKPSRAEYPCQQAAIPVAFSFLAWISASTLGVFLVRISRNYFNKKRIIIAGALC
                     VLGLGVFGVAQLFNSSDLSAATQSAIDLSVFSTKPNQPIGTAKGIYPGRVTWVRDISA
                     TPWDGKTGKWWEAGNINEQALASMISKSVRSLTGATNDTKAWTRLFQYYNRTHGKGNR
                     GWKPGELIAVKININNTYQANDVDNDIDQSPQATRALLKQLTGPAGVAQKDIIIYDAS
                     VGWKVRAIPDRIYKPLHEEFPEVRWMDGQGSPGREKPEWVANAITYTSPDVELGNELP
                     KAVVEAAYLINIALLKGHEIAGVTLCAKNHFGSIRYPQKDHGKYVSQMNGAKGDYSAF
                     VDLMGSPNLGGKTLLYIVDGLYGMQTNVGAPQPERDRWKRLFNGEWSASYFMSQDPVA
                     IESVCLDFLYAEFQGELGYSGAKAFPKGSSRNSDNYLIEAAKGTNAKLGPYMPNGFKI
                     GSLGVHEHWNNVMDKKYSRNLHTGRGIELIKIGQ"
     gene            8823..>9373
                     /locus_tag="VI413_10550"
     CDS             8823..>9373
                     /locus_tag="VI413_10550"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6915105.1"
                     /translation="MEHTQKTTEPNNTAVRTALWRALHVQIDAQPHILEDEIGFKLIA
                     PNADWRQRPDMDIDFTRRVRASMVARARFIEDLIIEQAKQGIKQYVILGAGLDTFAQR
                     RLEIASKLTVFEIDEPVTHQWKKQRLVELGYGIPEWLRFVSVDFEAGSSWWEALINEG
                     FDANQPAVIACTGLSMYLTREAN"
BASE COUNT         2784 a         2010 c         1912 g         2667 t
ORIGIN      
        1 gtactgttgg gattgaattt gaaaacaagt ttgcctgagg aacaatttgt ttgatttgag
       61 aaggacatga ccaacgcaaa cgaatactag cccctcctat ttcttcgaaa tactcaactt
      121 ttatatcata ctttttgcca gcttccaaat caattgttcc tgaatactca gtaccccagt
      181 cgctaatcca tttgtcaata accagttggt tgtttatcca caagcggcgt ccgttatcgc
      241 tatcaatata gaaagtatat ttttctgaat aattcggctt aatttgccct gtccagcgca
      301 tcgaagtttt atcagcttta agcatgggat cagcatttcc gttaccccag ttgaaatcca
      361 ctttgggatg tttggtgata ccagccatgt tttcgaaatt cataccattg tacatgcgac
      421 aaagcaatcc atctccatct tcgctgaccg tagcgggcgt aaatttccat tgggcacttt
      481 cctgattatt gtctacatag gtttgtacat tagcgcgagc cgaagtggaa cctaatgcaa
      541 catcaataac ccgtccactg tatagtgcaa ccattttata gcaactatct ccggcatcta
      601 caagtataaa ttgctgatcg ggagacgaac catcctgcca gatttgcaca ttggcactgt
      661 ccacaatctg aaggtcgttt acatccaaca atttcagact ctgcacaccc atgattttgt
      721 acactccatt accctgatgt gtaactataa actgttgatt ggtagcctgt gtagccgtat
      781 tttgctgaac atttgttcca ttggtaagtc cggagttata aacttccata ttcataccac
      841 tttttttgtt ctgaatggta aaaatacctt tcagcccggt aacaccgtta gggatcactt
      901 tcaacgaact aaccttattg tcccatgaaa ttgaactcag gcaggcagaa gaggatgtaa
      961 gttccaccat acttccggca aaattatcat ctgcaaataa ctgaaccttg aatccggaag
     1021 caattttcag cgatgagata tcatcattgg ccagtcccag tgcctgaagt ttactcaagg
     1081 tatattcacc cacgtcaatc cgggctgctt tattggcgta atcacaatcg gaatatgcag
     1141 ttacagcacc ttttaaatta ttatcatcat cgcttgtaag tgtcatatat gaaagtccgg
     1201 catcgatata ctgtccaccg gtggtttgta tacatctgat tgctatcgtg ttgacatcat
     1261 ttattttaat ggcattttta gccgctgtgc ttatttcaac atttacataa ccggtagtat
     1321 atccactcag gctggctgct aactcaccat taatgtatat aacacaattt tcatcgtgga
     1381 aaacactcat tttcatattt ttgatctgag taggagtcag atttccaacc gtaaacgttt
     1441 tgcgaatcca aatagtcgtt gtattccaaa gtgtgccgat ttggttacca tttgcatctt
     1501 taagcgatcc aaaaccgcca acagcagatg cccacgaact atcatcgaag gtaggtgtat
     1561 tccaggtgga agctggtgta ttagtagtat atttccaggt ttgggcaaca acgttggatg
     1621 ttggcagcac atcggcagcc gatgaaacat tgtcatttat aatcttttca ttcaacactt
     1681 taatgcgatc aggatcaact ttccatgtac gatcgtaggt cataaatcca ttaatttctg
     1741 actctacatc ggtaatctcg gtataaacag ctgccgacat acctctgtct ttcttaaatt
     1801 taagtaacat atcaaggtag ccagagtaga tatttaccaa accatcagca ttacctgcat
     1861 ttccataagg gttaccggct gtactccaaa gatgtccgga caccgccaac ccgattccgc
     1921 catattcgcc gcaaactaca gcgtgagtag tactgatatc gcagctggga tgaggataat
     1981 agtgcacatc aaacatatcg cactgttctt cagcacgttc gtgtccactt ccctgattaa
     2041 tcaaacgggt aggatccaat gcacgcacca tcaatgtatg tcttggagat tcaaactcag
     2101 cctgccactc gttgaaaata acccaggtta caattgacgg actattgtaa tgcgtgttga
     2161 tcattcgcgt caactcggta tcgaattgtg ctttttcaat agccattccc gatggagcat
     2221 cgtaagaatt tggagaaggc atatcctgcc aaaccatgat tccaagttta tcggcccaat
     2281 aataccagcg ttgcggttct actttgatgt gtttacgcac catgttgaac ccgagcgctt
     2341 tctccgcttc aatatctgat ttcaaggctt cgtcggtagg agcggtataa attccatcag
     2401 gccagaatcc ctggtccagt ggacccatca tgtaaacagc cttgttgttg aggtataact
     2461 gaggtgtggg agtttcgcgc accatcgtta ttttacgcat gccaaaatag ctcgacaccg
     2521 aatccacaac tacatttcca ctcatcagtt tgatatccag atcgtacaaa aacgggcttt
     2581 cgggagacca tagttttgca tttggaacag gaataatcaa ctcggtgtta gcagcgccgg
     2641 aaacagaccc aaccgaagct gaagcatctt ttgcagtagc ttttactgta agtccggtgc
     2701 cattgggcga atttacagtc agtttaagta cattgttgtc aatatccggg gtaattttga
     2761 tagttgctat attttgttgt gccacaggtt cgagccatac agtttgccag attccggtaa
     2821 cacaagtgta cataatacct ccgggcgctg tggtttgttt accgcggggt tgcccgaaat
     2881 cacgggttgg gtcatataca cgcacaatga tttcctgttg gcctgtgcct atcaacttat
     2941 ctgtaatatc atacgttatt tcatcgtaac cacctttgtg aatacccata ctcacaccat
     3001 tgacatacac ttccgattcc cagtcgattg caccaaagtg aattaaaact ctctttccgg
     3061 tccatgccgt tggaaccgta aaaagttttc ggtaccacac tctttcatca tgtttcacca
     3121 cacccgaaag tgttgcttca ggagcaaatg ggactacaat ctgcccgcca agagattgat
     3181 ttacgggtac cacatcacct gccgcaccgc ttttaaattc ccagtaacca ttcaggttca
     3241 tccaatctgt acgtaccaat tgaggacgcg gatattccgg caacggattg tttttatcca
     3301 ctttgtcagt ccagggagtt ttaattggtg ttactttcgg cgtaaattgt gccatcaccg
     3361 acaccgaaaa aactgaaaga aataataatg caatgaaatg ttttctcata aattgttttt
     3421 tgatttaatc ataaagtaag ctcagattat cctgcttatt taaaatacac taacacacat
     3481 ataaaaacaa gcagaagtaa ctatgcaaat gtatgcataa ttacttccgc taaataaaag
     3541 ataaatttca atttacaaca gaaactaacc aattatggct tgtttttgtt gtccggcaac
     3601 aaagaagtca tttgaaagcc aaaaaagctt aacctgagtt tctctttgct gatttgtcac
     3661 gacaaaaaca tgaaattcct gtaattgctt ttagttacaa ctccaacctg caaagccgtg
     3721 attatttatt tactaaaagt tcagtttgta tgctactact ttattatcca aaaaggttgg
     3781 aactagcagt aacttttggg atgggatata acccaaatcg gctgcattaa ttttcagagg
     3841 agttgtatcc agtaattttt caacaccttt acccactcta atgagctgaa catgtccact
     3901 ccaatcggaa gtgacaaata cggttggtgc tatttgctca ataccgtcca aatagccgac
     3961 cttttcctgt aaaacggcga tggcttttgt tttttgatca acagaaatga aattcccctt
     4021 cgaacccaaa taaagcaaat tgccactggc gtaaatacca ttcatgtttc ccaggttttt
     4081 actttgaata agtacttcca acgaatcttt tcctacataa aaaatacaat cgccttccga
     4141 atcggaaaca tatacccgcc cattagcagc aacgcataca tcattcagac ttttcgattt
     4201 tgcgttgcga tactctttca gaattttgcc ggttgataaa cttatttcca ctaccctatc
     4261 aatatccgtt acgtacaatt ttgttttcgt gcagctgatt ccctttggag cgttcagtcc
     4321 tttcacccat tctttttcga taaactcacc cttcgtattt agcttagaaa tataggcttc
     4381 gccatctttt acattgtgtt tcccaacaat attcgataca taaatagtct tatcagaagg
     4441 attgtaatgt gatgattccg gtacatttag cccagcagga gtactccata cttttactaa
     4501 tttattgcta acaaaagctt cctgagcact gatacccaaa caaagcatca ataaaagcga
     4561 ggtaataata ggtgttttca ttttcttaga tttaccggta gattataaat ttttgttcaa
     4621 aactcaattt tgatagttat tcattctatt attctacaaa aatacaatac ttttgcaatt
     4681 caacaaggtt gaataataat aaactcaaga taatatgata aattttttgc aaataggaac
     4741 acgcattcgt aatttacggt tgactcagaa ccgaacttta caggatattg ccaatgcttg
     4801 cgacttgtct aaaagtatgg tttccaaaat tgaaaccaat gcggtagtgc catcagtagc
     4861 cactttagtg aaaattgcca agtcgttggg cactaatgtc tcggtactaa tggaagaaaa
     4921 tgacacgcaa tcgtcggtga tgataagttc ggaaaaagcc aacgacaaca ttacacaaac
     4981 cgaccgtggt tatcatattt tcccttttgc ctccgaattt aaagataaaa agatgcagcc
     5041 atttctcttt gttgccaata aaggcgaagt gaaagagcat catttgacgc acgaaggcga
     5101 agaatttatc catgtgctgg aaggtgaaat gaaattgcag gtgggaacat tggaatactc
     5161 gctcaaacaa ggtgacagcg tatatttcaa ttcattggaa caacatggta ttatgccggt
     5221 ttcggacacg gtaaaataca tcaatatctt tgtttagaaa accttatata aatacattca
     5281 catgaaacga gcatgaacgc agaggttcat caagggtaat gaaaatctga tatgcgagtt
     5341 ccatatgaca actaaaaaca attatttcca tatgaaattc aacatcttat tactgagcat
     5401 actttgtagc ctgtctttat tttcccagaa taatgctatc aaaattaatg ttgatctgac
     5461 aaaagaaaaa gggccaatga aacccatttg ggcctggttt ggttacgacg aaccaaatta
     5521 cacctacatg aaagatggca aaaaactgct ttcggaaatt gcggcattaa gtccggtgcc
     5581 ggtgtatgtg cgggctcata acttaatgaa cacaggtgat ggtacggccg cactcaaatg
     5641 gggttctacc aatatgtaca ccgaagataa agacggaaat ccgatttaca actggacgat
     5701 tgttgattcc attttcgaca cttacattca acgtggtatg aagccattgg cacagattgg
     5761 gtttatgccc gaagcactat caacccaccc acaaccctac cagcatagct ggaagccggg
     5821 cgtaaaatat tccgaaattg aaaccggatg ggcttaccca ccaaaagatt acaacaaatg
     5881 ggcggaactg atttatcaat gggtgcagca ctcggtaaat cggtatggaa agtcggaagt
     5941 ggaaagttgg tactgggaat tgtggaacga acccaatggt gcgtatctta ttactccgaa
     6001 tgtatttgct gagtattgca aaatgtacga ctatgcttcg gatgctgtaa aaagagcttt
     6061 accaaccgca cgcatcggag gaccccacgt aacgggtggt gctaccaaat ttcttcggaa
     6121 ttttattacc cactgcctga aagatagcaa tgctgtaacc ggaaagattg gtgctccgct
     6181 ggactttgtc gcatttcatg ctaaaggttc accacgggta gtaaacgaca tagtgcgcat
     6241 gggcatgatg aaccaactcc gtgacatgaa cgaccatttc aaagtaattg cttcatttcc
     6301 tgagattaaa aatataccgg taattattgg cgagtcagat ccggaaggtt gtgctgcttg
     6361 cggtatgcaa accgatccgc aaaatgccta tcgcaacggc actatgtatt cgagttacac
     6421 cgcagcatcc attgcccgcg aatatgacct ggccgaatat catggggtga acctgatcgg
     6481 ggctgtcaac tggtcgtttg agttcgaaaa tcaaccatgg ttctttggat tcagggatct
     6541 ggcaacgaac ggtgtggaca aacctgtgct aaacgttttc agaatgttgg gaatgatggg
     6601 tggaaaacgg gttgatgttt cgggcgacct ggcttatgac ttcaaagcaa tccgagattc
     6661 gagtgttcgg ggcgttcgta cagacattaa tgcactgtca gcaaaaacta ccgataatac
     6721 caccattctt gtttggaatt atcatgatga cgatattcag ggagaaggtt cgctggtaaa
     6781 cttaagcata aaaggcctga aaaatggcaa agccacgttg tatcattatc gcattgatgc
     6841 cgaacatagt aactcgtacg aagtatggaa gaaaatggga tcgccacagc aaccaaccga
     6901 gaaacaatat aaggttttag aaaaatccgg acaactggag cttttatcta agccacgaaa
     6961 agtgaacatc aaaaactcag aactgactgt caactttcaa ttgccacggc aagctgtctc
     7021 gtttctgaaa attgaatata aaaactaact tacaatgaat aagataaaaa cctttttctt
     7081 taaaatctgt cccaaaagtg gacgaatcag gggcctacgg accgattcca tgtatcacaa
     7141 actaattttt ccaatcgttg gtttggtggc gttggtttgg gttatcgtcc gcgttgcccc
     7201 caaaccttcg cgggcagaat atccctgtca gcaagcggca attcctgttg ctttttcatt
     7261 tctggcctgg atttcggcaa gtacattggg ggtattcttg gtgagaatat cccgaaatta
     7321 cttcaataaa aagagaatta taattgccgg ggctttgtgt gtacttggat taggtgtttt
     7381 tggagttgcg cagcttttca acagttcaga cctctcggca gctactcagt cggctattga
     7441 tttatcggtt ttttcaacca agcccaatca acctattggt acagccaaag gtatttatcc
     7501 gggacgtgtc acctgggttc gcgatatttc agctacgccc tgggatggca aaacaggaaa
     7561 gtggtgggaa gcaggaaata tcaacgagca agcacttgcc tcaatgattt caaaatcagt
     7621 acgttcatta accggtgcta ccaatgatac taaagcatgg acgcgtcttt ttcagtatta
     7681 caaccggaca catggaaaag gtaacagagg gtggaaacca ggagaactaa ttgccgtaaa
     7741 aataaatatc aacaacacct accaagccaa tgacgtggac aatgacattg atcaatctcc
     7801 acaggcaacc cgggcattat taaagcaatt aaccggtccg gccggagtgg cgcaaaaaga
     7861 tataattata tacgatgcat cggttggctg gaaagtaagg gccatccccg atcgtattta
     7921 caaaccgctt cacgaagaat ttccggaagt gcgttggatg gacggacagg gaagtcctgg
     7981 acgagaaaag cctgaatggg ttgccaatgc aattacttac acttcgcccg acgtagaact
     8041 tggaaacgag ttacccaaag cagtggttga agctgcctat cttataaaca ttgctttgct
     8101 gaaaggacat gaaatagccg gtgtaacgct ttgtgccaaa aatcatttcg gctctatccg
     8161 ctatccgcaa aaagaccatg gtaaatacgt cagtcaaatg aatggtgcaa aaggggacta
     8221 cagtgcattt gtagacctga tgggttcacc aaacctgggt ggaaaaacac tgctttatat
     8281 tgttgatgga ctttatggta tgcaaaccaa tgtaggcgca ccgcagccgg aacgtgaccg
     8341 ctggaaacga ctctttaacg gtgaatggag tgccagttac tttatgtcgc aagatccggt
     8401 tgccattgaa tctgtttgtc tcgattttct gtatgcagag tttcagggcg aacttggtta
     8461 cagtggtgca aaggctttcc cgaaaggttc cagccgcaac tctgacaact atttaattga
     8521 agcagccaaa ggaacaaacg cgaagttggg tccttacatg ccaaacggct ttaagatagg
     8581 tagtttgggt gttcatgaac attggaacaa tgtaatggat aaaaagtaca gtcgcaattt
     8641 gcatacaggc agaggaattg aattgataaa aatcgggcaa taatgagtca gtcgactttc
     8701 tctcgttgaa gaaacactgt aattccggta gaaccatgta aatgttggtt gttttcaaac
     8761 atctggctgt tttcttttgt tacaaacgag acagaaaaga taatactcca cgacaaaata
     8821 atatggaaca tactcaaaaa acaacagaac cgaataatac agccgtacgc accgctttat
     8881 ggagagcttt acatgttcag atagatgcgc aaccacatat cctcgaagat gagattggat
     8941 tcaaacttat agctcccaac gctgactgga ggcaacgccc cgatatggac attgatttca
     9001 cgcggcgggt aagagcatct atggtagcac gcgcccgttt tattgaagat ttaattattg
     9061 aacaggccaa gcagggtata aagcaatatg ttattcttgg agcgggactg gatacatttg
     9121 cccaacgccg actggagatt gcgtcaaaac taacagtatt cgaaattgat gaaccagtca
     9181 cgcatcagtg gaaaaagcag cgattggttg aactgggcta tggaattccc gaatggcttc
     9241 gatttgtttc tgtcgatttt gaagctggct cttcctggtg ggaagcctta ataaatgagg
     9301 gtttcgatgc aaaccaaccg gccgtcattg cctgcacggg tcttagcatg tatcttacca
     9361 gagaagccaa ttt
//
LOCUS       DATDNM010000619         3867 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_716154, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000619 DATDNM010000000
VERSION     DATDNM010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3867
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_716154"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..663)
                     /locus_tag="VI413_10555"
     CDS             complement(<1..663)
                     /locus_tag="VI413_10555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006744825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEY6915106.1"
                     /translation="MELNYRNQKFEKLYSFLDRLEGRVNPGVLLLMVALVTIIIANSS
                     LHDWYESIWKINFFLGTEHFNVFSHQGHPFTTLQMVNDALMAIFFFTVGLEIKREILV
                     GELSSFKQAILPFIAACGGMIFPVLVFFTAGKLHNFSPEEFKGMAIPMATDIAFSIGV
                     LSLLGKRVPLSLKIFLLALAIVDDIGGIVVIAIFYSHFSTASLIYLLVSALLFGILML
                     GNY"
     gene            complement(700..2487)
                     /gene="lepA"
                     /locus_tag="VI413_10560"
     CDS             complement(700..2487)
                     /gene="lepA"
                     /locus_tag="VI413_10560"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004325757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HEY6915107.1"
                     /translation="MNNIRNFCIIAHIDHGKSTLADRLLEYTNTVAGKEMQAQVLDNM
                     DLERERGITIKSHAIQMNYKLNGEEYIFNLIDTPGHVDFSYEVSRSIAACEGALLIVD
                     ATQGIQAQTISNLYMAIEHDLEIIPIMNKMDMDNAMPEEVEDQIVELLGCKPEDIIRA
                     SGKTGMGVMDILEAIVTRVPAPKGDPEAPLQCLIFDSVFNSFRGIIAYFKIENGTINK
                     GDLVKFVNTEKEYSAEEIGILKLDMSPTKTLSAGNVGYIISGIKTSKEVKVGDTITHV
                     KRPCAKSIEGFQEVKPMVFAGVYPIETEDFEDLRSSIEKLQLNDASLTFEAESSVALG
                     FGFRCGFLGMLHMEIIQERLDREFDMNVITTVPNVSYKVYTKKDELIEVHNPSGLPDI
                     MAIDRIEEPYIRASIITRTDYIGQIMTLCLGKRGELVKQNYISGNRMELIYDLPLGEI
                     VFDFYDRLKSISKGYASFDYHMNGFRPSKLIRLDILLNGEPVDALSCLIHQDNAVTLG
                     KRMCEKLKELIPRQQFDIAVQAAIGAKIISRETIKAVRKDVTAKCYGGDISRKRKLLE
                     KQKKGKKRMKQIGNVEVPQKAFLEVLKLD"
     gene            2708..3799
                     /locus_tag="VI413_10565"
     CDS             2708..3799
                     /locus_tag="VI413_10565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915108.1"
                     /translation="MGLKFNYIFLLVLTVLLSACNDMKDVPTPVDLPLTPRETGKMYV
                     LSEGLFNMNNSTLSLLNFDTRTIYSDFFLFQNNRGLGDTGNDIKAYGSRLWIVINVSS
                     QVEVVDLHSGLSIKRIPIFNSNNVPRQPRYIAFSGPKAYVCSFDGTVARIDTTTLTIE
                     AITTAGRNPDGITVANGKLYVSNSGGLDLPNYDNTVSVIDLDTFTEIKKDIVGLNPYK
                     METDSKGDVYVVVRGNNGNIKAKFVRIDSKTVEVVQTFDNLPVVNFTIRNDTAYLYNY
                     DFTKNTFWVKTFDCKTEQVISDNFITDGTILERPFGIYVHPTNGNVYLTDARNYITKG
                     DLLCFNRKGKLIYKIESVGLNPNTIIAIP"
BASE COUNT         1252 a          835 c          662 g         1118 t
ORIGIN      
        1 gtaattgcca agcattaaaa ttccaaacaa tagggccgaa accagcagat atattaatga
       61 cgcagttgaa aaatggctgt aaaaaatagc aatcacaaca atgccaccaa tatcatcgac
      121 aatagccaat gccagcaaga aaattttaag actcaacgga actcttttcc ccaacagact
      181 taaaacgcca atcgaaaacg cgatatcagt agccattggt atcgccattc ccttaaattc
      241 ttcaggtgaa aaattatgca atttcccagc agtaaaaaat acaagtaccg gaaaaatcat
      301 acctccacaa gcagcaatga aaggcagaat ggcctgctta aatgaagaaa gctctcctac
      361 gagtatttcc cgttttattt caaggccaac tgtaaaaaag aaaatagcca tgagcgcatc
      421 attcaccatt tgaagagtgg taaatggatg accttgatgg ctaaaaacat taaaatgctc
      481 tgttcctaaa aagaaattta ttttccagat agattcgtac caatcatgaa gcgacgaatt
      541 agcaattatt atagttacca atgccaccat aagcagcaag acgccggggt ttacacgccc
      601 ctccaatcta tcgaggaagc tatacagttt ctcaaatttc tgatttctat aattcaactc
      661 catgattcac aacaacaaaa gagattaatt aaatcaaact taatccaatt tcaacacttc
      721 caaaaatgct ttctgaggaa cttccacatt accaatttgt ttcatgcgtt tttttccttt
      781 tttctgtttt tcgagcagtt tacgcttacg actaatatca ccaccgtaac atttggcagt
      841 cacatcttta cgcacagctt taattgtttc gcgcgaaata attttagctc cgatagccgc
      901 ctgtacagca atatcaaact gttggcgcgg gattagctct tttagctttt cgcacatgcg
      961 tttgccaagc gtaacagcat tatcctgatg gatcagacac gaaagcgcat ccacaggttc
     1021 accattcaag agaatatcca ggcggattaa tttcgacgga cggaatccgt tcatatgata
     1081 atcgaacgaa gcataacctt tggagatgct tttcagacga tcgtaaaagt cgaatacaat
     1141 ttcacccaat ggcaaatcgt aaatcaactc catacggttt ccagaaatat aattttgctt
     1201 taccaactca cctcgtttac ccaggcaaag agtcataatc tggccaatat aatcggtacg
     1261 ggtaatgatg gaggcgcgga tataaggctc ttcgatacgg tcaatagcca taatatcagg
     1321 caatccggaa gggttatgaa cctctatcag ctcatctttc ttcgtataaa ctttatatga
     1381 aacgtttggc actgtggtaa tcacgttcat gtcgaactcg cggtccagtc gttcctgaat
     1441 aatttccatg tgtagcattc caaggaatcc gcaacggaag ccaaagccaa gcgctacaga
     1501 cgattcggcc tcgaaagtca acgatgcatc attcaactgc aatttttcaa tagacgaacg
     1561 taagtcctca aaatcttcag tttcgatagg atacactccg gcaaaaacca ttggttttac
     1621 ttcctggaac ccttcgatcg attttgcaca aggacgcttt acatgcgtaa tggtatcacc
     1681 cacttttact tctttcgacg ttttgattcc cgaaataata tatccaacat ttcctgcact
     1741 aagtgtttta gtcggcgaca tatccaactt cagaatacct atctcctctg cggaatactc
     1801 tttctctgtg ttcacaaatt tcaccaaatc acctttatta atcgtaccat tttctatttt
     1861 aaaataagca atgataccac ggaatgaatt gaaaacagag tcaaaaatta aacattgtaa
     1921 cggtgcttca ggatcacctt ttggagcagg aacacgagta acaatagcct caagaatatc
     1981 cattacaccc ataccggttt taccactggc acggataata tcttcaggtt tacagcccag
     2041 cagctccaca atttgatctt caacttcttc aggcatggca ttatccatat ccattttatt
     2101 catgatcggg ataatttcca aatcgtgctc aatggccata tataaattag aaatggtctg
     2161 tgcctgaatt ccctgagtag catctacaat gagcaatgcc ccttcacaag ccgctataga
     2221 gcgtgatact tcgtacgaaa aatcaacgtg tcccggagtg tcaatcagat taaaaatata
     2281 ttcttctcca ttgagcttat aattcatctg aatggcatga ctcttaattg tgataccacg
     2341 ttcacgctcc agatccatgt tatcaagtac ctgtgcttgc atttccttac cggctacggt
     2401 gtttgtatat tctaaaagtc ggtcggctaa ggtacttttc ccatgatcaa tatgggctat
     2461 aatacagaaa ttgcggatat tattcattcg taattttctt caattttttg agtttggttt
     2521 gcaaaaatac acaaaaaaga tgaaattgag tgattcacag aagttatgaa ttacgaatta
     2581 agatttattt attgtttcac aatggcttat cccgttttcc ttcaaaaatc acaatttgag
     2641 aattggcaaa ttggtcattt ttgattttgt tgttgtattt ttgcagaaca ttttgataat
     2701 tacaaaaatg ggactcaaat tcaactacat tttcctttta gtattgactg tacttctttc
     2761 ggcatgcaac gacatgaaag acgtgcccac tccagtcgac ttaccactta ctccgcgtga
     2821 aacaggcaaa atgtatgtgc tttctgaagg acttttcaac atgaacaaca gcacattaag
     2881 cctgctgaat ttcgacaccc gcaccattta ttccgatttt ttcttatttc agaacaaccg
     2941 tggacttggc gacaccggca acgatataaa agcctatggc agcaggttat ggatagtgat
     3001 aaatgtttca tcgcaagtag aagtagtgga tttgcactct ggtctttcta tcaaacgcat
     3061 tccaattttc aattccaata atgtgccccg acaaccacga tacattgcat tttccggccc
     3121 caaagcctat gtttgttcgt tcgacggaac cgtggctcga atcgacacca caacattgac
     3181 aattgaagcc ataactactg ccgggcgaaa tcctgacgga ataactgttg caaatggtaa
     3241 attatacgta tccaattccg gcggtttgga tttaccgaac tatgacaata ctgtctccgt
     3301 aatagattta gatacattta ccgaaataaa aaaagatata gtcgggctga acccttacaa
     3361 aatggaaact gacagcaaag gtgatgtata tgtagttgtg cgtggtaaca atggaaacat
     3421 aaaagccaaa tttgttcgaa tcgacagtaa aacagttgaa gttgttcaaa cattcgacaa
     3481 tctacctgta gtaaatttca ccattcgtaa cgacacagct tacctataca attacgattt
     3541 tacgaaaaac acattttggg ttaaaacttt tgattgcaaa acagaacaag tgatttcaga
     3601 caactttatt acagacggaa caatcttgga acgtccgttt ggcatatacg ttcaccctac
     3661 caatggcaat gtatacctga ccgatgcacg gaattatatc acaaaagggg atctgctgtg
     3721 ctttaatcga aaaggaaaac ttatatacaa gatagaaagt gtgggattaa atccaaatac
     3781 gatcattgct attccgtaaa aattgattct gaacaacctt aattgaaaaa aaattacact
     3841 tttcagacaa aaaaaacaag caaatat
//
LOCUS       DATDNM010000620         2494 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1143557, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000620 DATDNM010000000
VERSION     DATDNM010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1143557"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..942
                     /locus_tag="VI413_10570"
     CDS             <1..942
                     /locus_tag="VI413_10570"
                     /inference="COORDINATES: protein motif:HMM:NF021942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008239 - dipeptidyl-peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0070009 - serine-type aminopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S46 family peptidase"
                     /protein_id="HEY6915109.1"
                     /translation="SLSSGAEMPRIALVTENLIKKNISQDSLLKVVAKQYKDYYPAVD
                     EATLAAMLDVYKKSVDGDALPEVYKTIQNRFKGDYSKYAKYLYKKSAFSSLEKITKAI
                     KSGQIQFSADPAIVFAQDIRKTMELIKRPEYTEAMEKIRDAERLYENGLKAMAAEKGI
                     ALAPDANSTMRMTFGKVGGYNPADAVEYKYYTTTKGILEKEIPGDYEFDVPVKLKQAI
                     EGNNYGAYLDKKTGEMHVAFLSNNDITGGNSGSPIFNAKGELIGLAFDGNWEAMSGDI
                     VFEPDLQRTINVDIRYVMFVMDKVGDATRLIEELNIK"
     gene            1281..>2494
                     /locus_tag="VI413_10575"
     CDS             1281..>2494
                     /locus_tag="VI413_10575"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6915110.1"
                     /translation="MFRQTLVSICLLISIFSSQAIPSPVRFSFEKFSYNDKLPSNSVI
                     RIYNDKEGYMWFGTKDGVCRFDGYDMKVFRSSALTPGKLSNNEIRCIAEDNEQQLWIG
                     TYEGINIINKKNYSIKPLENKYIKKELINSIFTDSKGYVWIGTSSYGVLRMNSKTGEF
                     TRYSTDNDSPLKLKGNNVTNIYEDRNGRIWISLWKGGLCYIDVDRKHIYYSPKVGNDD
                     NPFRVYQDKDGVYWICTWGNGIFTMNYDYKAKMTLQPLKLSKNSTTKVDDIVYSITQD
                     DKYGYIWVVTFSGLNLIEKEPDGSYKILDTNSYFSENTSKLFHEISKDRRGNLWIGSV
                     GDGLYKLDFNKLSIQNYPLSEIKSTLNVQSYVTRFCETNTGDVFIVINRIGLFHFNQR
                     TGEVTRPTDNAS"
BASE COUNT          835 a          491 c          499 g          669 t
ORIGIN      
        1 tcactttcga gcggagccga gatgccgcgc atagcattag tcacagaaaa cctgattaaa
       61 aagaatattt cacaggactc acttttaaaa gtggtagcca agcaatacaa agattactat
      121 ccagccgtag atgaagccac attagctgca atgcttgatg tgtacaaaaa atcggtagat
      181 ggtgatgcac tgccggaagt ttacaaaacc attcagaata ggttcaaagg cgattacagc
      241 aaatatgcaa aatatctgta caagaaatcc gcattttctt cgctggaaaa aataaccaaa
      301 gccattaaga gtggccaaat tcaattttcg gccgatcctg caatcgtttt tgcacaagat
      361 atccgtaaaa caatggaatt aatcaaacgt ccggaatata ctgaggcaat ggaaaaaata
      421 agagatgcag aacgattgta tgaaaacgga ctcaaagcca tggctgcaga aaaaggcatt
      481 gcccttgctc ctgatgcaaa ttcgactatg cgtatgactt tcggcaaagt gggcggatac
      541 aaccccgccg atgctgttga atataaatat tacactacca ccaaaggaat cctggaaaaa
      601 gaaattccgg gcgattatga attcgatgta cctgtaaaac tgaaacaggc cattgaaggc
      661 aataactacg gtgcttatct cgacaagaaa actggtgaaa tgcatgtggc attccttagc
      721 aacaatgaca tcacaggcgg aaattcagga agtccgattt tcaatgccaa aggagaatta
      781 atcggcctgg catttgatgg aaactgggaa gctatgagcg gcgatatcgt tttcgaaccg
      841 gacctgcaac gcacaatcaa cgtggacatt cgctatgtta tgttcgttat ggacaaagtg
      901 ggcgatgcaa cacgtctcat tgaagaactg aatattaaat aagactgtta ttcacacttg
      961 attataaaag cgtttgcatt agattgcaag cgctttttta ttcccggcaa acagactgaa
     1021 agcgtacaat atcagttgat tttcatatgt tttctaccca cgttacaatt attcatgttc
     1081 agtatttatt aattgtttac actttaacaa ctgcacagca tttaaatttc cacttattgt
     1141 actacttttg cagtagtatg ttcgtgtaaa ttagaaaact aattattcag taagcgaaca
     1201 attagaagtc aaagcaacaa cctttatctc acagattgca tttcaataaa tgccatctta
     1261 attaaattcc gggaagaacc atgtttagac aaactttagt ctctatctgt cttttaataa
     1321 gtattttcag ctctcaggct attccttcac cagtccgttt cagcttcgag aaattttcat
     1381 acaacgataa acttccatcc aattcggtta tccgcattta taacgataag gaaggctata
     1441 tgtggttcgg aaccaaggac ggagtgtgcc gtttcgatgg atacgacatg aaagtgttca
     1501 gatcgagcgc attgactccg ggaaaactat ccaataatga aatccgttgc atagctgaag
     1561 ataacgaaca gcaactatgg atagggactt atgaaggtat caacattatc aacaaaaaga
     1621 attactctat taaaccgctg gaaaataagt atatcaaaaa agaattgata aactccattt
     1681 tcactgattc caaagggtat gtgtggattg gtacatccag ctatggtgtg cttcgaatga
     1741 attccaaaac cggagaattt acccgctact caaccgacaa tgattcccca ttaaaattaa
     1801 agggaaataa cgtaaccaat atttatgaag accgcaacgg gcggatatgg atttcgcttt
     1861 ggaaaggcgg gctatgctat atcgatgtcg accggaagca tatttattat tccccaaaag
     1921 tgggcaatga tgataatccg tttcgtgttt atcaggataa agatggagtt tactggattt
     1981 gtacgtgggg aaacgggatt ttcactatga attatgatta caaggctaaa atgaccttgc
     2041 agccgctgaa attgtcgaaa aactcaacaa ctaaagtaga cgacattgtg tacagtatca
     2101 cacaggatga caaatatggc tatatatggg tagttacatt cagtggtttg aatttaattg
     2161 agaaagagcc cgatggctct tataaaatac tcgatacaaa ttcctatttc agcgaaaaca
     2221 ccagcaagtt atttcatgaa ataagcaaag accgccgcgg aaacctttgg ataggttccg
     2281 ttggggatgg actgtacaag ctcgatttca acaagctttc catacaaaat tacccgttaa
     2341 gcgaaatcaa aagcacgctc aatgtgcagt cttacgttac ccggttctgc gaaacaaaca
     2401 ccggcgatgt ttttatcgtc attaaccgga tcggattgtt tcacttcaac cagagaaccg
     2461 gtgaagtaac acgcccaacc gacaatgcct caag
//
LOCUS       DATDNM010000621         2026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1571097, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000621 DATDNM010000000
VERSION     DATDNM010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1571097"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            670..930
                     /locus_tag="VI413_10580"
     CDS             670..930
                     /locus_tag="VI413_10580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915111.1"
                     /translation="MKKFVAFFFCLFFSFLFAFSQAGHQSFTTQCERTGFTSQGDCYG
                     CADFCAGFFIQTNSFNTIHDVSAVNLFTDDALLHPVFTDYHH"
     gene            979..>2026
                     /locus_tag="VI413_10585"
     CDS             979..>2026
                     /locus_tag="VI413_10585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6915112.1"
                     /translation="MKNYFKGTFYRYAKLFIGIAVGSFLFVSCDTYQYDDKEPDWLGA
                     SIYDYLRTDGHFTNYTRLIEDLGYTEVLSKTGSKTLFVANDSAFNEFYKSNQWGVTGY
                     DHLTLAQKKLILNFGMINNAYLVDMLSNYNNGGLKEGAAMRRVTAISVLDSLPFNTND
                     QLPASTYWQYYKTKGLYLLKDNTPWTLVCFTQKHLDQAQITNEDFSIITGLSRVQNDA
                     HVFGIKIIKKDITCKNGYLNVLERVMIPPVNMAEYVTTNPDMSMFSSLLERFSAPFFD
                     AASTLQYSQLHPEFGDSIFVKKYFARAGGMTRYPSGSTTVPSDLLLPFDPGWNSYERT
                     TSGYALESDMAAMFV"
BASE COUNT          601 a          374 c          399 g          652 t
ORIGIN      
        1 agtagctcaa ctttcagtat ttactatcca gggagcattg gtttctgatg agaaattcac
       61 agcccttgca ggtagaaacc gcaaagttat taatgcaaat cttccttcag gaatgtatat
      121 tgtaagaatg actcagaatg gtcaatcaag tttcagaaaa gtgattaaat aagctcacga
      181 aaataatcta aataaaaagg ctgtctctgt tttgagacgg ccttttttgt tggattttac
      241 cagttatgta attagaagga aatgcctgtt tgaaatgacc tgatttaatt tcagaaaggc
      301 ttttgtgtcc ggacgttata tggttgtttg tgagttgttt gtatgagctt ctgcctattt
      361 caggcctttg tgtttttacg gataattaaa ctgcgaaaat acagaattta tctcccttaa
      421 ttactcaaat gtccaccttc ctgaaatacc attaatacta tatttgcact gtgtaagtaa
      481 gcaaaattac aatcgggtat ttaccgcttt tcgctgagaa tgaaatgtgg gttcaacttg
      541 aacaaaatcc atttgaaatt gcttataatc ataagcttgt ttctgacaaa acgagtagct
      601 aaaaccttaa attccagttc tgaagtattt gtacttttga tttgataaaa agacaataca
      661 attcatatta tgaaaaaatt tgtagcattc tttttttgct tatttttctc atttctgttt
      721 gcctttagcc aggccggaca ccaaagcttc acaactcaat gtgaaagaac cggttttaca
      781 tcacaaggcg actgctacgg ttgtgcagat ttttgcgcag gcttctttat ccaaacaaat
      841 tcatttaata caatacacga tgtttcggct gtaaatttat ttacggacga cgcattattg
      901 cacccggttt ttacagatta tcatcattga gcacctatat acaaatatat tgacttcatt
      961 ttttaaattt aagatataat gaaaaattat tttaagggaa cattttatcg atatgccaaa
     1021 ctgtttatcg gcattgccgt aggtagtttt ttgtttgttt cctgcgacac ttatcagtac
     1081 gacgacaaag aaccggattg gctgggagcc agcatttatg actatctgag aaccgatggg
     1141 cattttacca actatacccg gttgattgaa gatttgggtt ataccgaagt attgagtaag
     1201 acaggaagta aaactctttt tgtggccaat gactctgctt ttaatgaatt ctataaaagc
     1261 aaccaatggg gcgtaacggg ctatgaccat ctgacgctgg cccaaaagaa acttatcctg
     1321 aactttggta tgataaataa tgcctatctg gtggatatgc tttccaacta caataatggc
     1381 gggctgaaag aaggtgcggc gatgagacgg gtaacagcca tttccgtttt agacagtttg
     1441 ccgtttaaca ccaacgacca gttgcctgcc agtacttatt ggcagtatta taaaaccaaa
     1501 ggtttgtatc tgcttaaaga caataccccc tggacgttgg tttgtttcac ccaaaaacat
     1561 ttagaccagg ctcagataac caatgaagat ttcagcatta tcactggctt gagtcgcgta
     1621 cagaatgatg ctcatgtttt tggtatcaaa ataatcaaaa aagacataac ctgtaaaaat
     1681 ggttacctga acgtacttga acgagtaatg attccgcccg ttaatatggc cgaatatgtt
     1741 acgacaaatc cggacatgag catgttctca tcgttactgg aaaggttcag tgcgccattt
     1801 ttcgatgctg ccagtacgct tcaatacagt cagttgcatc ctgaatttgg cgattctatt
     1861 tttgtgaaga aatattttgc ccgtgcaggt ggtatgaccc gctacccgtc gggatcaaca
     1921 actgtgcctt cggatttatt gttgcctttc gatccgggat ggaatagtta cgagcgtacc
     1981 accagtggat atgcattgga atctgatatg gcagctatgt ttgtac
//
LOCUS       DATDNM010000622         2568 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1784667, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000622 DATDNM010000000
VERSION     DATDNM010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1784667"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(655..1098)
                     /locus_tag="VI413_10590"
     CDS             complement(655..1098)
                     /locus_tag="VI413_10590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915113.1"
                     /translation="MDFRHIGKPVRRPQMKRALLLTLMVIVAFSLGWLANDAFTFSKA
                     MRNDRFADYRLKPKNVPAGAFWAGGVDGGNWFVVKQINNLRNEASIEVYNDQDGSLLL
                     SKSFILTCPTDNQILIDSLKEQINFFDGTKIFLTSDKKRSPCYLQ"
     gene            complement(1221..2510)
                     /locus_tag="VI413_10595"
     CDS             complement(1221..2510)
                     /locus_tag="VI413_10595"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY6915114.1"
                     /translation="MFPTGRVSTSVENDEFENIAGRENLAYISGNTTVSAKLHHTQSL
                     IMKNINLQFLLLTTLQFLGFSLSAQKHFNFTVQLPQGINIEKVQVWLQDGKTLNQVIP
                     QSKTGNQLVLTGDYYSIYAAINLQYNLEPPNRAFASTFFIQEKPALVKVYPPDSAEYP
                     FANYSLENAFDFKKEKEQMQDYVFAERQTALDYEYEYGDKIFGRDTAIRNTYVKLNNA
                     LKEKELGYIVSHLNSYYSFYSFREDVARYRIVSADSLLTVFNAFPDNFKYSDEGNFLN
                     QFLHGKQLVQNNGNAIDFITRDINKKKVTLSDYKGKKLVLLHFWATWCTPCMKEIPAI
                     KEISDQYKSKDLQIISIALPSSKYADYLATINKLQMDWINVYNDDALQNRYGRQPTPR
                     LCLIDKTGKVIYDSVGVEKNDFQLNELKKKLKEVMNN"
BASE COUNT          732 a          491 c          494 g          851 t
ORIGIN      
        1 ttgatcacgg tgtctacttc tccggtcgta ttgacaatag atagcttttg ctgacccaaa
       61 ttgcttcgat ttgaaacgtt cgcacaggat ataaaaatta ttgcagttag aaagtatttc
      121 atcaattgtt gcgtataatg aacaggtttt ttaatagtac aggtatttaa aatactgctg
      181 gttcccttat tcaaaagcaa aatagttatt cttataatga gatcatattc ttagccatat
      241 gttccgatgt gaaaaaacct ttggctcacg gtagaaaacc ttataacctt agtagcaata
      301 gttccacatc acctactcac aaccttatta ccttattgcc ggttgaataa gctaataagg
      361 ttagacccca ggggtggcga cgctttctac taaggtaata aggtgggtct tcgtgcgaga
      421 ccgtgttggt atctcaacat cccggatgat agatgacgcg ttcgtacttc tcgattctca
      481 tggcgtcaat gagtttacac ttcttctttc cagaatagcc tcaaacgttc aaagtctgtg
      541 attgttacga tttcaatgaa gttgacaact ctaatcttcg ctgaaacatt gtattacccg
      601 gccgtatttg tcagccggca tgacgcagaa tccatgtaag aagcagtgtt caaatcactg
      661 caagtaacat ggtgaccttt tcttgtcaga agtcaaaaat atctttgtcc catcaaagaa
      721 attgatttgt tcttttaaac tgtcaattag tatttgattg tcagtcgggc aagtcagtat
      781 gaatgactta gaaagcaata gacttccgtc ctggtcattg tagacttcga tacttgcttc
      841 gtttctcaaa ttatttattt gttttactac aaaccaatta ccgccatcta caccgccagc
      901 ccaaaaagcc ccggctggaa cgtttttcgg tttgagtcga taatctgcaa atcgatcatt
      961 tcgcatagcc ttgctaaagg tgaaggcgtc gttagcaagc cagccgaggg agaaggcaac
     1021 tatgaccatt aatgtaagta gaagtgctcg tttcatttgt ggccgacgga cgggcttgcc
     1081 gatgtgccgg aagtccatga ttcgtctgtt tggaaagtta gataaagttg aataaagaac
     1141 aaatgctgaa tggttattcg tcagcaggta tattggcaaa cttttgttag aggtacatag
     1201 cggcatcaaa ccttagggtt tcaattattc ataacttctt tcaacttttt tttaagttcg
     1261 tttaattgga aatcattttt ttctacacca acgctgtcat aaattacttt tcctgttttg
     1321 tcaataaggc aaagtctggg cgtaggttgt ctgccatatc tattttgcag agcatcatca
     1381 ttatatacgt taatccaatc catctgaagc ttgtttatag ttgccaggta atccgcgtat
     1441 ttcgatgacg gcaaggcaat ggaaataatt tgcagatctt ttgatttgta ttgatcgctg
     1501 atctctttta ttgccggtat ttctttcatg caaggtgtgc accaagtagc ccaaaaatgt
     1561 aacaatacca atttctttcc cttgtaatca gaaagcgtca ccttcttttt attaatatcc
     1621 cttgttataa aatcaatggc gttgccatta ttctggacta attgtttccc gtgtagaaat
     1681 tgattcagaa aatttccttc atcgctgtat ttaaaattat cgggaaaagc attgaatacc
     1741 gttagcagtg aatcagcgga aacaattcta tatctggcta catcctctct aaagctgtaa
     1801 aaagagtaat aagagtttag atggcttact atatacccca attctttttc ttttaaagcg
     1861 ttattgagtt ttacataggt attgcgaatg gccgtatccc tgccaaaaat tttatctcca
     1921 tattcatact cgtagtctaa tgccgtttgt ctttcagcaa aaacatagtc ctgcatttgc
     1981 tctttttctt ttttaaaatc aaaagcattt tccaatgaat aatttgcaaa aggatattcg
     2041 gctgaatcag gtgggtaaac ttttacaagc gctggttttt cttggataaa aaaagtactt
     2101 gcaaatgctc tgttgggcgg ctctaagttg tattgtaagt ttatcgcagc atatatcgag
     2161 taataatcgc ctgttaatac taattggttt cctgtttttg actgaggaat gacttgattt
     2221 aaagtttttc cgtcttgaag ccatacttgc actttctcga tattaattcc ctgtggcagt
     2281 tgaactgtaa aattaaaatg cttttgagca gacaaagaaa aacccaaaaa ttgtaaagta
     2341 gtaagaagta gaaattggag gtttatattt ttcattataa gactttgggt gtggtgcagc
     2401 ttggcgctaa cagtagtatt gccgctaata tacgcgaggt tttcccgacc cgcaatattt
     2461 tcaaattcat cattttcaac tgaagtggag acccgaccgg ttggaaacac gtgcaaccga
     2521 aataacaggc ctttcagatt atgtcacggg gtcggctgcg ccagaccc
//
LOCUS       DATDNM010000623         3499 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_504106, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000623 DATDNM010000000
VERSION     DATDNM010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504106"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1027
                     /locus_tag="VI413_10600"
     CDS             <1..1027
                     /locus_tag="VI413_10600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005945354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEY6915115.1"
                     /translation="RAGKKKATDLKEDERDYYLERRYPAFGNLVPRDVASRAAKERCD
                     AGYGVGNTGLAVYLDFSAAIERLGENVVRARYGNLFQMYEKIVDDNPYRTPMMIYPAI
                     HYTMGGIWVDYELQTSVKGLFCIGEANFSDHGANRLGASALMQGLADGYFVLPYTIQN
                     YLADQIQTPRMSTELPEFEQAEKDIHAKIEKIMKIQGTKSVDSIHRELGLIMWDFVGM
                     GRNKAGLETALEKIKAVRHEFWTKVYVPGVSTDVNVELEKALRVADFIEIGELMARDA
                     LMREESCGGHFREEYQTPEGEALRNDEEFSFASCWKFAGEGKEPELLKEALDYEFIHR
                     QQRNYKS"
     gene            1055..1810
                     /locus_tag="VI413_10605"
     CDS             1055..1810
                     /locus_tag="VI413_10605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005859980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEY6915116.1"
                     /translation="MEKNINLTLKVWRQAGPKVKGEFETYKVENVSTDSSFLEMLDVL
                     NEKLIKERKEPIVFDHDCREGICGMCSLYINGHPHGPDGEITTCQLHMRNFKDGQTIT
                     VEPWRSAAFPVIKDLMVNRGAFDKIIQAGGYVSVNTGGIPDGNAIPIGKVDADEAMDA
                     ASCIGCGACVAACKNGSAMLFVSAKVSQLALLPQGRVEAAHRAKLMVAKMDELGFGNC
                     TNTGACEAECPKNVSISHIARMNREFIGAKLKD"
     gene            complement(2042..2539)
                     /locus_tag="VI413_10610"
     CDS             complement(2042..2539)
                     /locus_tag="VI413_10610"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEY6915117.1"
                     /translation="MRQLPVQSKPSYGFCETPFGECCIAFSNDGICALIFPESREAAY
                     ADLDHRFPETDFLQNDEKVAELVRRIFEKGEKPLLHPIGTDFQLSVWHALQRIPAGKT
                     TTYAIIAEAIGRPKAVRAVGTAVGANPIGFLIPCHRVIRTDGGLGGFRWGLDCKKKML
                     EWEKR"
     gene            2685..>3499
                     /locus_tag="VI413_10615"
     CDS             2685..>3499
                     /locus_tag="VI413_10615"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: protein motif:HMM:NF013071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HEY6915118.1"
                     /translation="MEKINSAVAIFWFRRDLRLEDNASLYHALQCGLPVLPLFIFDSD
                     ILSLLDDKHDKRVDLIHQALESIDVKLKSMGSSLCVKAGRPIDVFEKLCTEYDIKTIF
                     TNRDYEPYALKRDTEIRDFLRSKEIEFLTFKDQVIFEHDEILKSNGEPYTVFTPYSKV
                     WKQRLQESNYKSHPSESIQNYFQFTAQLPEIEEIGFFKTKLIFTPPTIDTNLIRNYDQ
                     TRNSPALKGSSELSVHVRFGTVSIRRLVAIAVKSNEIWLNELIWREFFMSILM"
BASE COUNT         1093 a          704 c          731 g          971 t
ORIGIN      
        1 ccgtgcagga aagaaaaaag caactgacct gaaagaagac gaacgcgatt attatttgga
       61 gcgccgttac cctgctttcg gtaacctggt tccacgcgac gtagcttcac gtgctgctaa
      121 agaacgttgc gatgccggtt acggtgttgg aaacacaggc ttggctgttt atcttgattt
      181 ctctgcagct atcgaacgtt taggtgaaaa cgtggttcgc gcccgttacg gtaacctttt
      241 ccaaatgtac gaaaagatcg ttgacgataa tccatacaga actccgatga tgatttaccc
      301 tgccattcac tacacaatgg gtggtatctg ggttgattac gaactacaaa cttctgtaaa
      361 aggattgttc tgtattggtg aggctaactt ctccgatcac ggtgctaacc gcttgggtgc
      421 ttcggcattg atgcaaggtt tggccgatgg atatttcgta ttgccatata ctattcaaaa
      481 ctatttggct gatcagattc aaactccacg catgagcaca gagttgcctg aatttgagca
      541 agctgaaaaa gatattcatg ctaaaatcga aaaaatcatg aaaatccagg gaactaaatc
      601 ggtagattct atccaccgtg aacttggctt aatcatgtgg gattttgtag gaatgggtcg
      661 taacaaagcc ggcttggaaa ctgcattgga aaaaatcaaa gctgtacgcc acgaattttg
      721 gaccaaagtt tatgtaccgg gtgtaagcac tgatgtaaac gtcgaattgg aaaaagcact
      781 tcgtgtagct gactttattg aaattggcga gttgatggca cgtgacgcgt tgatgcgcga
      841 agaatcatgt gggggccact tccgcgaaga gtaccaaact cccgaaggtg aagcattacg
      901 taacgacgaa gaattctcat ttgcttcatg ctggaaattt gccggcgaag gcaaagaacc
      961 agaattgctt aaagaagcgt tggattatga atttatccac cgtcaacaac gtaattataa
     1021 atcataattc agaaattcgt aattagtata tccaatggaa aaaaatataa atttaacgct
     1081 aaaagtttgg cgtcaagccg gtccgaaagt taaaggcgaa ttcgagacct ataaagtgga
     1141 aaacgtatcc acagacagct cattccttga aatgttggac gttttaaacg aaaaattaat
     1201 caaagaacgt aaagaaccta tcgtgtttga ccacgattgt cgcgaaggaa tttgcggtat
     1261 gtgtagctta tacattaatg gtcatccaca tggaccagac ggtgaaatca ctacttgcca
     1321 gttacacatg cgtaacttca aggatggtca aaccattact gttgagcctt ggcgttcggc
     1381 tgcattccct gttatcaaag acttaatggt gaatcgtggt gctttcgaca aaatcattca
     1441 ggcaggcggt tacgtttcgg taaatacagg tggtattcct gatggtaatg caattccaat
     1501 cggaaaagtt gatgctgacg aagctatgga tgctgcttca tgcattggct gtggcgcttg
     1561 tgttgcagca tgtaaaaacg gttcggctat gttgttcgtt tcggcaaaag taagccagtt
     1621 ggcattgctt ccacaaggtc gggttgaggc tgctcaccgt gccaaattga tggttgctaa
     1681 aatggatgaa cttggttttg gtaactgtac taacaccgga gcttgcgaag cagaatgtcc
     1741 taaaaacgtt tctatttcgc acattgcccg tatgaaccgc gagttcattg gtgcaaaact
     1801 gaaagactaa aaactttttc ccaagataga aaaagaggcc gtccaatttc ctggacagcc
     1861 tcttttagta taacacactc ccacccaatt gcatttatgt aaataaagtc atctaatacg
     1921 aaaaatattg tcacacacca gtaacgttat tttgaacttt tcaaaataaa ttaacaagaa
     1981 aagaaaaagg ctgaatttcg aattgaaatt cagccttttt tgtatcatct cgattgaaag
     2041 tttatctctt ctcccactcc aacattttct ttttacaatc caatccccaa cggaaaccgc
     2101 caaggccacc gtcagtacgg ataacacggt gacacggaat cagaaaacca atcgggttag
     2161 ctccaacggc tgttcccacc gctcgcacag ctttcggacg gccaatagct tcggcaatta
     2221 tcgcgtaagt agttgttttt cctgccggaa ttcgctgcaa agcatgccag actgataatt
     2281 gaaaatctgt gccaatggga tgaagcaacg gtttttcgcc tttttcaaaa atccgacgta
     2341 ccaattcggc taccttttca tcattttgta gaaaatccgt ttcaggaaag cggtgatcca
     2401 aatcggcata agcagcctct ctgctctccg gaaaaatcaa agcacaaatt ccatcgtttg
     2461 aaaaggcgat gcaacattcg ccaaaaggcg tttcacaaaa cccatatgaa ggtttggact
     2521 ggacgggtaa ttgtctcatt ttactcaaaa ttatgtatag aaaaataaaa gacggcttgt
     2581 tttcgataat tttacctaaa aaatatttta agcacaaaat actaccaaaa actccattac
     2641 atttgtggca aatttaagca taataaatca gcattgttca agatatggag aaaattaatt
     2701 ccgcagtggc tatattctgg tttcgacgcg atttgcgact cgaagataat gctagcttat
     2761 atcatgcctt gcagtgcggt ttacccgtct tacctctgtt tatttttgac tccgatatcc
     2821 tttcattact tgacgacaag catgataaac gtgttgactt aatccatcag gcacttgaat
     2881 caatagatgt gaaattaaaa tcaatgggaa gctcactatg tgtgaaagct ggtagaccta
     2941 ttgatgtttt tgaaaaactt tgtactgaat atgatataaa aaccattttc acgaatcgtg
     3001 attacgaacc ttatgcattg aaacgggaca cagaaataag agacttttta agaagcaaag
     3061 aaattgagtt tctaaccttt aaggatcagg ttatttttga acatgacgaa atactgaaaa
     3121 gcaacggaga gccttacaca gtcttcacgc cctattcaaa agtatggaaa caaagacttc
     3181 aggaaagcaa ttacaaatcc cacccatctg agagtattca gaattatttt cagtttacag
     3241 cccaacttcc ggaaatagaa gaaattggat ttttcaaaac gaaactcata ttcactccgc
     3301 caacaatcga cacaaacctg atcagaaatt acgaccaaac gcgcaattcc cctgctctaa
     3361 aaggaagctc tgagttaagc gtacatgtac ggttcgggac ggtgagtatt cgtagactgg
     3421 ttgctattgc agttaaaagt aacgaaatat ggttgaatga actcatttgg cgggagtttt
     3481 ttatgagcat acttatgaa
//
LOCUS       DATDNM010000624         4004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_824237, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000624 DATDNM010000000
VERSION     DATDNM010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4004
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_824237"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(577..1506)
                     /gene="nadA"
                     /locus_tag="VI413_10620"
     CDS             complement(577..1506)
                     /gene="nadA"
                     /locus_tag="VI413_10620"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEY6915119.1"
                     /translation="MNKTELISEINRLKKEKNAVIMAHYYQMGDIQDIADVVGDSLAL
                     AQKAAQTDADIIVLCGVHFMGETAKILSPTKKVLVPDLEAGCSLADSCPADAFEAFTK
                     AHPDHTVISYVNTTAAVKALTDVVVTSTNAKKIVDQFPKDAKLIFGPDRNLGDYINSV
                     TGRSMLLWDGACHVHEQFSVEKLVKLKSEHPGSLILAHPECKKPVLLMADFIGSTQAL
                     LNYATSSDAKSFLVATESGILHEMQKHNPTKEFIPVPPNDSTCACNECNFMRLNTLEK
                     LYNCLKNESPEILVDEEIRVKAVKPILRMLEMS"
     gene            complement(2044..2862)
                     /locus_tag="VI413_10625"
     CDS             complement(2044..2862)
                     /locus_tag="VI413_10625"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6915120.1"
                     /translation="METKVVLITGASAGIGLAAAVQMMNKGIKVYAASRRGGISQKAS
                     NGVGELVHVTMDVNNETEIAAVVAQILKENKSLDAVICNAGFGIAGSIEDSSSEEIKS
                     QFETNFFGAVKTIQACLPVFRAQGYGKIITTSSVAAVVPIPFQAFYSASKAALSVFMQ
                     ALAMEVKPFGIQCCIVLPGDTKTDFTSARKYTEGSQCTKSVYFEKMKVSVGKMEKDEQ
                     NGMSPDSIATEMVNQVTRKNMNMVVIPGFQYKVICWLFNRLPTKVSLWIVGMLY"
     gene            2980..3960
                     /locus_tag="VI413_10630"
     CDS             2980..3960
                     /locus_tag="VI413_10630"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY6915121.1"
                     /translation="MKVLVTGANGLLGHHVVFELLRNKHDVSIVVRSTSNIYFDATVV
                     HVSEGNFTDYETLKNAADGCDAIIHIAAVTATDLLHYSDYSQINVEGPAQIIRVANEL
                     NIKRLVFVSTANTIGFGTEELSANETFPIQFPFTESFYAQSKLEAEQLFVQASLLPDR
                     HVIIINPTFLIGAFDTKPSSGKLMLMGYKKRLMFAPQGGKNFVPVRDVATAVYNALTQ
                     GRNGERYLASGTNLSFSEFYKLQKQTANYKQHLIEIPDSVLLVVGKIGDLIRKLGIKT
                     EVCSMNLRQLIVREYYTNAKAKTELSMPQTELKTAISEAIDWFKMNGMVE"
BASE COUNT         1185 a          760 c          819 g         1240 t
ORIGIN      
        1 gtataccacg ctgatgcaga ttatttacaa acgcatcgag gaaagcacta cccgtagggc
       61 gaaaaccggt tgtaggtact tctattgagc tgtcagcttc gagtgtttcg ggttgctcca
      121 agttcagata caactcagcg ggggtgtatt gtttgaatgt tgctttcata catgatgatt
      181 ttcggttatt tcctgacaaa aataacaata atttttatac aaaataacaa tgtatgaaat
      241 ataatattgc ggatgatata tcgttggcaa tatccggaac atgggaaatt gcgtctgaca
      301 gttcattggc aatttccgaa ggataaaata ttgccgttga ttactcattg gcacattccg
      361 aaagttggaa aattgcggat gatagttcat tggcaatatc cgaaacttcg gaaattgcag
      421 ttgagtactc agcagcaatt ttataaaatt atttatgggc taatgactta taaaaggcaa
      481 tattaaaatg aaataaataa aaaatgcagg ctaaaatgag tggttcatta tagcctgcat
      541 ttttaaatca cgcggttaga aaccgcgaaa cccttgttaa gacatttcca gcatcctcaa
      601 aataggtttc actgctttta cccgtatttc ttcgtccacc agaatttcag gagattcatt
      661 tttcaggcaa ttatagagct tttcaagcgt gttcagacgc ataaaattac attcgttgca
      721 ggcgcaggta ctatcgtttg gaggtacagg aataaactct tttgtagggt tatgtttctg
      781 catttcgtgt agaattccac tttcggtagc taccaaaaat gattttgcat ccgaactggt
      841 ggcgtaattg agcaaagcct gtgtgcttcc aataaaatcg gccatcagca acacgggttt
      901 cttacattcg gggtgagcca aaataagcga accgggatgt tcggatttta atttcaccag
      961 tttttcaaca gagaattgct cgtgtacatg gcacgctccg tcccatagta acatcgaacg
     1021 tccggtgaca ctgttgatat aatctcctaa gtttctgtca ggcccaaaga ttaatttcgc
     1081 atctttgggg aactggtcca caattttctt tgcattggtc gaagtcacca ccacgtcagt
     1141 aagcgctttc acggctgctg tggtgtttac gtacgaaata accgtatggt cagggtgagc
     1201 ctttgtaaat gcttcaaacg cgtcggcagg acaactgtcg gccaacgagc aaccggcttc
     1261 caggtcagga acaagtactt ttttggttgg agaaagaatt ttggctgttt cgcccataaa
     1321 atggacgccg caaagcacaa tgatgtcggc atctgtctgg gcagcttttt gggccagcgc
     1381 cagactgtcg cctaccacat cggcaatatc ctgtatatcg cccatttggt agtagtgagc
     1441 catgatgacg gcattctttt cttttttgag tcggttgatt tccgatataa gttctgtttt
     1501 attcatctgt tcgaaaattt gaaatttgaa aagtttgaag ttttcaaata gatattataa
     1561 ttattctttt aaatttttca aaaaacttta tagagataat aataggctgt tgatagagtt
     1621 gataaaaata ttgtgaaatg cttgtgtata tccgttatca aagttgcata tatccttttc
     1681 aacaattttc aacaatctat tattattgaa atacagtaaa atacaaactt tatcaacacg
     1741 ctgttaataa ctgcaaagtt agaaactttt tactaaccca cctgctgata actgcataaa
     1801 acaggttaaa aaatacctgt aaaaaaagtg ctaactattt tggttgtatc aaaacaatgg
     1861 atatgcaacg atagttttca attctccaaa taaagttgtt atatttctat caagggtttt
     1921 cagcaagttt tcaacaggtt gttgataggt tttcagacac gaaaaaaagg gaaggaaaaa
     1981 gcaaaaaaaa agcttgccgg agaattcact ccggcaagct ttttataaat cagaattgta
     2041 gttttagtag agcataccca ctatccacaa acttactttt gtaggcaagc ggttgaatag
     2101 ccagcaaatt actttgtatt ggaaaccggg aataacaacc atattcatat ttttacgggt
     2161 aacctgattc accatctcag tggcaataga gtcgggcgac atgccgtttt gttcgtcttt
     2221 ttccatttta cccaccgata ctttcatttt ttcgaaataa accgatttgg tgcattgcga
     2281 cccttcggta tatttacggg ccgaagtgaa gtcggttttg gtatcgccgg gcaatacaat
     2341 gcagcattgg ataccaaatg gttttacttc catggcaagt gcctgcataa ataccgataa
     2401 agctgcttta ctggccgaat aaaaggcctg gaaaggaatg ggaactacgg ctgcaaccga
     2461 cgatgtggtt ataattttac cgtagccctg tgctctgaaa actggtaaac aagcctggat
     2521 tgttttcaca gctccaaaga agttggtttc aaactgcgat ttaatttctt ccgaagagga
     2581 atcttcaatt gaaccggcaa taccgaatcc ggcgttgcaa ataacagcat ccagactttt
     2641 attttctttt aatatctgtg ccaccacagc tgcaatttct gtttcgttgt tcacatccat
     2701 ggttacatga accaactccc ctactccatt cgatgctttt tgggaaatgc cacccctgcg
     2761 cgatgcggcg tacactttta ttcccttatt catcatttgc actgctgcag ccagcccaat
     2821 gccggcactt gccccggtaa tcaatactac ttttgtttcc ataattttaa aaatgcatag
     2881 tttttcgggg tgcaaatata ctgattatta aattgattct gatttatgaa tctgaaagaa
     2941 ttgttacttt tgcatgtcac catattaaac aatagtaaaa tgaaggtttt agttacaggc
     3001 gcaaacggat tattggggca tcatgtggtt tttgagttac ttaggaataa acatgacgtt
     3061 agtattgttg tgcggagtac aagcaatatt tatttcgatg caacagtagt ccatgtttcc
     3121 gaaggtaatt ttaccgatta tgaaacgctt aaaaatgctg ctgatggttg cgatgccatt
     3181 attcatattg cagctgttac ggctaccgat ttgcttcatt atagcgatta tagccaaata
     3241 aatgtggaag gaccggcgca aataatcagg gttgccaatg aattgaatat taaacggctg
     3301 gtttttgtaa gtactgctaa tactatcggt tttggcactg aagaactttc tgccaacgaa
     3361 acctttccta ttcagtttcc ttttaccgaa tcgttttacg cgcaaagcaa actggaagcc
     3421 gaacagcttt tcgttcaagc ctccctcctg cccgaccgtc atgtgattat tatcaatcct
     3481 actttcctga tcggtgcttt tgataccaaa ccaagttccg gaaaattgat gttgatgggt
     3541 tataaaaaac ggttgatgtt tgcacctcag ggtggtaaaa actttgtgcc ggtgcgcgat
     3601 gtggcaacag cagtttacaa tgcattgact cagggcagaa atggtgaaag gtatctggct
     3661 tcaggaacaa atctatcatt cagcgaattt tacaaacttc aaaagcaaac ggcaaattac
     3721 aagcagcatt tgattgaaat acctgattct gtattgcttg tagttggaaa aattggagat
     3781 ttaatccgca agctgggaat aaaaaccgaa gtttgcagca tgaatctgcg tcagttgata
     3841 gtgagggaat attatacaaa tgccaaagcc aaaacggaac tttctatgcc gcagacggaa
     3901 cttaaaacgg ccatttcgga agcgattgat tggtttaaaa tgaatggaat ggtggagtaa
     3961 atcagctgtt tatttgatta taaacgattt tcgttcggtg gtgt
//
LOCUS       DATDNM010000625         3285 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1999808, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000625 DATDNM010000000
VERSION     DATDNM010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3285
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1999808"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..263)
                     /locus_tag="VI413_10635"
     CDS             complement(<1..263)
                     /locus_tag="VI413_10635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEY6915122.1"
                     /translation="MEQQYIDLYKEQHESIKKHSAAVMNDLRDASFALFEELRFPTAA
                     LENYKYSDLKAPLAIDYGLNINRIPIPVNPYEVFKCDVPGIHS"
     gene            complement(350..1105)
                     /gene="sufC"
                     /locus_tag="VI413_10640"
     CDS             complement(350..1105)
                     /gene="sufC"
                     /locus_tag="VI413_10640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004307398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEY6915123.1"
                     /translation="MLEIKNLHANINGKEILKGLDLVVRPGEIHAIMGPNGAGKSTLA
                     SVLTGNQAFEVTHGDVTFYGKNLLELNPEDRSREGIFLSFQYPVEIPGVSMVNFMRAA
                     VNEHRKYKNLEPISATDFLRLMREKKELVEMDNKLANRSVNEGFSGGEKKRNEIFQMA
                     MLDPRLSILDETDSGLDIDALRIVANGVNKLKRPDNASIVITHYQRLLDYIIPDFVHV
                     LYDGRIVKSGGKELALELEERGYDWIKKEVDGE"
     gene            complement(1238..2674)
                     /gene="sufB"
                     /locus_tag="VI413_10645"
     CDS             complement(1238..2674)
                     /gene="sufB"
                     /locus_tag="VI413_10645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEY6915124.1"
                     /translation="MSADILHEVTQGDYKYGFTTDIETDIIPIGLSEDVVRLISAKKN
                     EPEWMLEFRLKAYRHWLTMKMPEWAHLDIPKIDYQSIAYYAAPRKNAPKSLDEVDPEL
                     LKTFEKLGIPLHERMALSGVAVDAVMDSVSVKTTFKDSLSELGIIFCSFSEAVEHHPD
                     LVQKYMSSVVPYTDNFFATLNSAVFSDGSFVYIPKGVRCPMELSTYFRINAMNTGQFE
                     RTLIIADEDSYVSYLEGCTAPMRDENQLHAAIVEIVALKNAEVKYSTVQNWYPGDKNG
                     VGGIYNFVTKRGICKGESSKISWTQVETGSAITWKYPSCILLGDNSSAEFYSVAVTNH
                     HQQADTGTKMLHIGKNTSSHILSKGISAGLGQNSYRGLVKVNAAAENARNFSQCDSLL
                     LGDKCGAHTFPYMEVNNDTAIVEHEATTSKINEDQIFYCNQRGISTEDAVGLIVNGYA
                     KEVLNKLPMEFAVEAQKLLQITLEGSVG"
     gene            3079..>3285
                     /locus_tag="VI413_10650"
     CDS             3079..>3285
                     /locus_tag="VI413_10650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915125.1"
                     /translation="MKKTLLLTSALVIAAAFSLNAQKKVAYITDTITANTPYVNDTKI
                     LPMFKADPNFVVTKIQATVSGQDLT"
BASE COUNT          990 a          703 c          600 g          992 t
ORIGIN      
        1 tacgaatgaa tgccgggcac atcacatttg aacacttcat acggatttac aggaatagga
       61 attctattga tattcagccc ataatcaatg gcaagcggtg ctttaagatc agaatattta
      121 taattttcca acgcagcagt aggaaaacgg agttcttcga acaatgcaaa agaagcatcg
      181 cgcaagtcgt tcatcaccgc agccgaatgc tttttaatgc tttcgtgttg ttctttatat
      241 aagtcgatat attgttgttc cataatattt tagcagtaag aggcaagcag taagtggtaa
      301 gcgtagaatt ttccaaacca atgaactgat aaaccaataa accagttaac tattctccgt
      361 caacttcttt tttaatccag tcatagcctc tttcttcgag ttccaatgcc aattcttttc
      421 ctcccgattt tacaatgcgt ccatcataaa gtacatgcac aaagtcagga ataatataat
      481 ccaacaaccg ctgatagtgg gtaattacaa tacttgcatt atccgggcgt ttgagtttat
      541 tcaccccatt ggcaacaata cgcaacgcat cgatatccag tcctgaatcg gtttcgtcaa
      601 gaatggataa acgcggatcg agcatcgcca tttggaaaat ctcgttacgt ttcttttcac
      661 ctccagagaa accttcgttt acagaacgat tagccagttt gttgtccatt tccaccaact
      721 ctttcttttc acgcatcaaa cgcaaaaagt cagtcgcaga aataggttcc aggtttttat
      781 atttgcgatg ctcatttacg gcggcacgca taaaattaac catacttaca cccggaattt
      841 caacaggata ctggaagctg agaaaaattc cttcacggga acgatcttcg ggatttaatt
      901 ccaagaggtt ttttccataa aatgtcacat cgccgtgtgt cacttcaaaa gcctgattac
      961 cggtaagcac cgaagccagt gttgattttc cggcaccgtt aggtcccatg attgcatgta
     1021 tttctccggg acgaacaacc aggtccaacc ctttcaatat ctctttgccg ttgatattgg
     1081 cgtgtaagtt tttaatttct agcataatgt attaccccta acccctaaag ggaaattaag
     1141 ttagttattc tctttgtatt tgagtataaa ttgttttata aatagtataa atcgactcca
     1201 gaaaagcccc cataaagggg ttgggggtcg ttttgtttta tccaaccgaa ccttcaagtg
     1261 ttatctgaag tagtttctgt gcttctacag caaactccat tggcagtttg tttagcactt
     1321 ctttggcata accgtttaca atcaagccca ctgcatcttc ggttgatata ccgcgttgat
     1381 tgcaataaaa tatctgatct tcattaattt ttgaagtggt tgcttcgtgt tctacaatag
     1441 ccgtatcgtt attcacttcc atatacggga atgtgtgtgc accacatttg tcaccaagca
     1501 acaagctgtc gcattgcgag aagttacgtg cattctcggc tgcagcattc actttcacca
     1561 atccacggta actgttttgg cccaatccgg ccgaaattcc ttttgacaaa atatgactgc
     1621 tggtattttt accaatatga agcattttgg ttccagtatc ggcttgttgg tggtgattgg
     1681 ttactgctac agaataaaat tcggcagaag aattatcgcc caacaaaata caacttggat
     1741 atttccaggt aatggccgaa ccggtttcta cctgcgtcca cgaaattttt gaactttcgc
     1801 ctttgcaaat accacgcttg gttacaaaat tgtaaatacc accaacgccg tttttatcac
     1861 cgggatacca gttttgaaca gttgagtatt ttacttcagc atttttcagt gctacaattt
     1921 ccacaatagc tgcgtgtagt tgattttcgt cacgcatcgg agccgtacaa ccttcgaggt
     1981 atgaaacata actgtcttcg tcggcaataa tcagggtccg ttcaaactgc ccggtattca
     2041 tggcattgat acggaaatat gttgaaagtt ccatggggca acgaacgcct tttggaatat
     2101 atacaaatga tccgtctgaa aacacggcgg aattcaatgt tgcaaagaaa ttatcggtat
     2161 aaggaaccac cgaactcatg tatttctgca caaggtcagg gtggtgttca acggcttcgc
     2221 tgaacgaaca gaaaataatg cccagctccg acaaactatc cttgaaagta gttttaaccg
     2281 aaacactatc cataaccgca tcaacagcta ctccggataa agccatacgt tcgtgaagcg
     2341 gaatacccag tttctcaaac gtcttgagca attcggggtc cacctcatcc agacttttcg
     2401 gtgcattttt gcgcggagcg gcataatagg caatgctttg gtagtcaatc ttcgggatgt
     2461 cgagatgcgc ccattcaggc atcttcatcg ttaaccagtg gcgataagct tttaagcgaa
     2521 attcgagcat ccattccggc tcatttttct tggcggaaat aagtcgaaca acatcttcgc
     2581 taagcccgat aggaataata tcggtttcaa tatcggttgt aaatccgtat ttgtaatctc
     2641 cctgggtgac ttcgtgtaat atatctgctg acataatgat tttaattcta atttaaccat
     2701 ttataattcg caatacaatc atattctgaa tcataaataa atttgaaagt gcaaaggtac
     2761 aaaaaaatgt gtttttaagc atagttttgg tgtctttaat cgcgactaca taacacatca
     2821 aaacttgttt ttgttttcaa aagtcctgat attgacattt tttttgagat tgtcgtcaga
     2881 cgcaatgaat cggacaccat aaatcgacaa gaaagcttgg tttgcattaa tttaccgaaa
     2941 aaacacaact gcgtaaaaaa tcataataag cagtcataca atcaaaatga atatgatttt
     3001 agttgtaaga ctcgagttta tttgtcacaa tctaaaacag ataacaaaaa ccgaatatta
     3061 atcttaaaat taaatcacat gaaaaaaaca ttactcttaa catctgcctt agtaattgct
     3121 gccgcattta gtttaaatgc ccaaaagaaa gtagcctaca taacggacac cattacagca
     3181 aacacacctt acgtaaacga cactaaaatt ctgcctatgt tcaaagcgga tcctaatttt
     3241 gttgtcacca aaattcaggc aactgtaagc ggtcaggact taacc
//
LOCUS       DATDNM010000626         3333 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1037984, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000626 DATDNM010000000
VERSION     DATDNM010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3333
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1037984"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..1125)
                     /locus_tag="VI413_10655"
     CDS             complement(70..1125)
                     /locus_tag="VI413_10655"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6915126.1"
                     /translation="MKTIQLNGIIYSNENLDQLLAVAESSNSWQYAIYQFLQNWFDDS
                     DFILSQTSGSTGKPKSIKLPKQSMINSARMTNEFFGLDENKTALLCLPATYIAGKMML
                     VRALVGGFNLVTVEPSANPFEKLETDIDFVAITPYQLLHSVGSLKNMPIGNIIVGGGH
                     VNSRMEELVADIPASMYETYGMTETASHIALRCFNGENKSDCFTVLDGVDIRLDERGC
                     LAIYAPHLYPNELITTDIVELLGNRSFRWLGRIDSVINSGGVKIFPEQIERKLERIIP
                     SNFFIASLPDDVLENKVVLLIESDKYNALDETKLLEQMRSVLAKYEFPKEIFYLRAFV
                     YSSGNKILKNETLQLLD"
     gene            complement(1122..2162)
                     /locus_tag="VI413_10660"
     CDS             complement(1122..2162)
                     /locus_tag="VI413_10660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HEY6915127.1"
                     /translation="MIKAKYKTLDLQFKFPAGTSRGVLMNKPSSFLILEKDGFTGIGE
                     CSTIPDLSIDPQDSYYVKLDEVCQLLNDGSEPDSIYLSAYPSIAFGLETALLDLKAKG
                     SKCLFPSEFTDGKTGIPINGLVWMGDKDFMQKQIREKIAAGYHCIKLKVGAIDFETEL
                     EIISGIRQQFPASDIELRLDANGAFSPANALEKLDKLARFDIHSIEQPICQGQHEAMA
                     SVCLQSPIPIVLDEELIGVNSPKKETILASIKPAYIILKPSLLGGFHESEEWIRLAEK
                     QNIRWWITSALEANIGLNAIAQWTYSLHSSLPQGLGTGQLYHNNIPSPLEIENAKLFY
                     KPLQNWDLTSIL"
     gene            complement(2215..3111)
                     /locus_tag="VI413_10665"
     CDS             complement(2215..3111)
                     /locus_tag="VI413_10665"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: protein motif:HMM:NF004750.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0046428 - 1,4-dihydroxy-2-naphthoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEY6915128.1"
                     /translation="MIKHWIAAFRLKTLPLALSNTILGSCLAAADEKFRWPVFGLAAL
                     TTILLQILSNMANDYGDFVNGKDTAERIGPKRMVQSGEITPKTMLRGIIVIGILCAVS
                     GASLILIGTAGIDITNILIFGVLGIAAIAAAIKYTVGKNPYGYRGLGDIFVFIFFGLV
                     GVLGTYFLHAQTLCWDLLLPASAIGFLSTGVLNMNNMRDYEADKNAGKKTIIVAMGTK
                     NGAFYHLFLVGGAALLAIIYTLMNYETAWQWLFLLSFPILFLNLKKVFMYKDALELYP
                     ELPRLSMASLIFSITFGIGLLL"
     gene            complement(3229..>3333)
                     /locus_tag="VI413_10670"
     CDS             complement(3229..>3333)
                     /locus_tag="VI413_10670"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002561903.1"
                     /note="catalyzes the formation of
                     1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HEY6915129.1"
                     /translation="NATMLYYMTEEAHEGKHAFLEKRKPDFGKYPKLP"
BASE COUNT         1011 a          761 c          638 g          923 t
ORIGIN      
        1 tggaacatac attcgcccga aacagggcat taaacacatt taaagctaca ttaaaagaaa
       61 ggccgtaaac taatccaaaa gttgaagcgt ttcgtttttc aatattttat tccctgaaga
      121 ataaacaaat gccctgaggt agaaaatttc tttaggaaat tcatactttg ccaaaaccga
      181 gcgcatttgc tccagaagtt ttgtctcatc caaggcatta tacttatctg attctataag
      241 caaaacaact ttattctcga gcacatcatc gggcaaagag gctataaaaa agttggaagg
      301 tatgattctc tccagtttcc tttctatctg ttcgggaaaa atcttcacac ctcccgaatt
      361 aatcaccgaa tcgatccgac ccagccatcg gaacgaacgg tttccaagca gttctacaat
      421 atcggttgta attagctcgt taggatacaa atgcggagca taaatagcca ggcagccacg
      481 ctcatcaagc cggatatcaa ccccatcaag caccgtaaaa caatctgatt tgttttctcc
      541 gttgaaacac cgcagcgcga tatgcgaagc tgtctcggtc attccataag tttcatacat
      601 cgaggccgga atgtcggcaa ccaactcctc catcctggaa tttacatgac ctccaccaac
      661 tataatattt ccaatcggca tgttctttaa actcccgact gaatgtaaaa gttgataggg
      721 agtaatggcg acaaaatcaa tgtcagtttc cagcttttca aaagggttag ccgaaggttc
      781 aactgttacc aggttaaatc ctcccaccaa agcccgcacc agcatcattt ttcctgcaat
      841 gtaagtagcc ggcaagcaaa gcaaagccgt tttattctca tccaatccga agaattcatt
      901 tgtcatccgg gcagaattga tcatgctttg cttgggtagt tttatgcttt tgggttttcc
      961 cgttgaacct gaggtttgag acagaataaa gtccgaatca tcgaaccagt tttgcagaaa
     1021 ctgataaata gcgtattgcc acgaattgga agattcagcc accgcaagca gttgatccag
     1081 attttcattc gaataaatta ttccgttgag ctgtatcgtt ttcataaaat cgaagtcaaa
     1141 tcccaatttt gtagcggttt ataaaataat tttgcgtttt caatttccag tggcgaagga
     1201 atattattgt ggtacaattg gccggttccc aagccctgcg gaagcgatga atgaagtgag
     1261 taagtccatt gggcaatggc gttaagtccg atattggctt cgagtgccga agtgatccac
     1321 caacggatat tctgtttttc ggccaaccga atccattctt ccgattcatg gaaaccaccc
     1381 agcaaacttg gtttcagaat aatataagca ggtttaatgc tggctaaaat tgtttccttt
     1441 ttcggtgaat ttacgcctat tagttcttcg tccaaaacaa ttggaattgg cgattgaagg
     1501 caaactgaag ccatagcttc atgctgcccc tgacagatag gttgttcaat agaatgaata
     1561 tcgaatcttg ccaatttatc cagtttttca agggcatttg ccggactaaa agcgccatta
     1621 gcatccagcc ggagttcaat atcggaagcc gggaattgct ggcggatacc ggaaataatt
     1681 tccagttccg tttcaaaatc tattgcccca actttaagtt taatgcaatg ataaccggca
     1741 gcaattttct cgcggatttg cttttgcatg aaatccttat cgcccatcca caccagacca
     1801 ttgatcggaa ttccggtttt tccgtcagta aattcagaag gaaaaaggca cttagaaccc
     1861 ttggctttca aatcaagcaa agcagtttcc aacccgaaag caatagaagg ataagcagac
     1921 aaataaatgg aatcaggttc actaccatca tttagcaact gacaaacttc atctagtttt
     1981 acataatatg aatcttgcgg atcaatgctt aaatcgggaa tagtggaaca ctcgccaata
     2041 ccagtaaaac catccttttc caatatcagg aacgaagatg gcttgttcat caaaacgccc
     2101 cgcgaagtac cagcggggaa tttgaattga agatcgagag ttttgtattt tgccttaatc
     2161 atatcaaaca caaacgcacg gagacacgga gttggtggct tcgtgtccct gtgtttatag
     2221 tagaagtcct attccaaaag ttatcgaaaa tattaagctt gccatagaca aacgtggcag
     2281 ttccggataa agttccaatg catctttata cataaaaacc tttttgaggt ttaaaaacaa
     2341 aatggggaac gacagcaaaa acaaccattg ccaggctgtt tcataattca taagcgtata
     2401 aattatggcc agcaaagctg ctccacccac taaaaacaaa tggtaaaaag ccccgttttt
     2461 cgtacccatg gccactataa ttgttttctt ccctgcattt ttatcggctt catagtcgcg
     2521 catattgttc atattcagaa cacctgtact caaaaatccg attgccgaag cgggtaacaa
     2581 caaatcccaa cagagcgttt gcgcgtgcag aaaataagta ccaagcactc cgaccaaccc
     2641 gaaaaaaata aacacgaaaa tatcgccaag cccccgataa ccgtacggat ttttgccaac
     2701 ggtgtatttg atggcggcag caatcgctgc tattcccagt acgccaaaaa tcagaatgtt
     2761 ggttatatca attccggctg ttcctatcag gataagtgaa gcacccgaaa cagcacacaa
     2821 aataccaatt acgataattc cgcggagcat cgtcttcggg gttatctcgc ccgattgcac
     2881 catccgcttc gggccaatcc gctcggcagt atctttgcca ttcacaaagt cgccgtaatc
     2941 gttggccata ttcgacagaa tttgcaataa aatagttgtc aaagccgcca aaccaaatac
     3001 cggccaacgg aatttttcat cagccgctgc cagacacgat cctaaaatcg tgttcgacaa
     3061 tgccagcggc aacgttttta agcgaaaagc tgcaatccaa tgctttatca taagttgaga
     3121 gatttaccac taaggcacta agagcacata gcctcactaa gcttttgatt tttcttgata
     3181 tatttcctta gtctttctta ctgtccttag tgccttagtg ttgattaatt acggtaattt
     3241 cggatatttt ccaaaatccg gtttacgttt ttcaaggaaa gcatgtttcc cttcgtgcgc
     3301 ctcttcggtc atgtaataaa gcatggttgc att
//
LOCUS       DATDNM010000627         2281 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1038046, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000627 DATDNM010000000
VERSION     DATDNM010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2281
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1038046"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            291..614
                     /locus_tag="VI413_10675"
     CDS             291..614
                     /locus_tag="VI413_10675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915130.1"
                     /translation="MKDIEQIQKLSILHCVYQLIASADGGIDEKRDNNVIDLALSELG
                     LTSVYSWDSALKLNPHDCFLHVSLLNDDNKNMCRALLLRIANMAGNTTSRIICANHLF
                     QFCSI"
     gene            913..1278
                     /locus_tag="VI413_10680"
     CDS             913..1278
                     /locus_tag="VI413_10680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY6915131.1"
                     /translation="MKNENEKIVLSELNENLRKLMSVPSYKLGGYTFDVEKRLLSINN
                     ESVKLTRKESYLFVLFAANVNNFLERKEMLVTIWMEDTYYNSRSMDVYICKLRKLLSK
                     DPKITIINIHGKGYKIIVS"
     gene            complement(1362..1586)
                     /locus_tag="VI413_10685"
     CDS             complement(1362..1586)
                     /locus_tag="VI413_10685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915132.1"
                     /translation="MRKLNCPQCEIHRFFVKNQKEETLLVNVTDQYDVVPVHPDQSLE
                     GFDLNLLYCLGCSWKGSPKSLKNGSHKKRY"
     gene            complement(1591..>2281)
                     /locus_tag="VI413_10690"
     CDS             complement(1591..>2281)
                     /locus_tag="VI413_10690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6915133.1"
                     /translation="GEFIYLLGKVGSGKTSLLKSMYHEVPVSSGVAGVLGYDLTELKL
                     NEVPFLRRKIGIVFQDFQLLTDRTVSQNLDFVLRATGWKDQNSIDEQIDSVLTQVGMR
                     AKGYKMPHQLSGGEQQRIVIARALLNSPEMILADEPTGNLDPQTGSELVELLYNIRLS
                     GTTVIMATHNMSWLDKFPGRVFRCEGEKLEEITDNSPAEKKVAAEKPAVADNSEVVID
                     EFPENINVLLD"
BASE COUNT          798 a          424 c          350 g          709 t
ORIGIN      
        1 cataaatcga aacaacatta aagattaatt cgtttatata aaaaaggaaa tttaaagatt
       61 acatgtgtac aacaaacaca agtgatatgc gaaaaaaata aataaaaaga gttatgacaa
      121 atactgtaaa gcaaaaatta attatgggta aaaactgcat tcgcttcaaa aatcctgaca
      181 atatcctttg tgactaattg ctgaacttac aaaaaagaat agcaaccgaa gagtagatta
      241 aaatttatga agacacaatt aaattatcta acaacaaata attattcagc atgaaagaca
      301 ttgaacaaat tcagaaatta tctattttac attgcgttta tcagctcatt gcatccgcag
      361 atggtggtat cgacgaaaaa agagataata acgtcattga tttagctcta tctgaattag
      421 gcctaacctc tgtctattca tgggattcag ccctaaaact caatccacac gattgtttct
      481 tacatgtctc attactaaat gacgacaaca aaaacatgtg tagagctttg ttgcttagaa
      541 ttgccaatat ggccggaaat actacttcca gaataatttg cgccaatcat ttatttcaat
      601 tttgttctat ttaatgttat tgtaaaaaaa tcaattgtcc gactactttt aaaactgaat
      661 acattggtct aaagattgac tttttttgta acatagctac atattcacct gcctttttgt
      721 taaatcttca ataaaaacca ctttttgata aaaaaaaatg attcattgta aacaatgtga
      781 aaacaattat tgttattttt gtaagcaatt aaattaaaaa tgttctacta aatcatttag
      841 tcaaaaacag aacaacaata tattattaat cactatcact atcactatac taacttttta
      901 aaaattacaa gtatgaaaaa tgaaaatgaa aaaatcgtgt taagcgaatt gaatgaaaat
      961 ctcagaaaac tgatgtcagt tccatcttat aaattgggtg gatatacatt tgatgtagaa
     1021 aagagattac tttcaatcaa taacgaatcg gttaaactaa cccgcaaaga atcgtattta
     1081 tttgttttgt ttgccgcaaa cgttaacaat ttcctggaac gtaaggaaat gctggtgacc
     1141 atttggatgg aagacactta ttacaattcg agaagcatgg atgtatacat ttgcaaattg
     1201 cgtaagctcc ttagcaaaga tccaaaaata acaatcatta atatccacgg aaaaggatat
     1261 aaaatcattg ttagctaatt gacaggaata tattttcaaa taaatttcct atttagttat
     1321 taaagaaatc cccgaaatcg tttgattccg gggattttca tttaatatcg ttttttgtga
     1381 ctgccattct taagcgactt tggcgaacct ttccaagagc acccaagaca atacaacaag
     1441 tttaagtcaa aaccttccaa cgattgatcc ggatgcaccg gaaccacatc atattgatct
     1501 gttacattca ccaatagagt ttcttctttt tgattcttca caaagaaacg gtgaatttca
     1561 cattgaggac aatttagttt tcgcattggc tcagtctagc aacacattaa tattttcagg
     1621 aaactcatcg attactactt ctgaattgtc agctacagca ggtttttcag cggctacttt
     1681 tttttcagcc ggactgttgt ctgtaatttc ttcgagcttc tctccttcgc aacggaaaac
     1741 tcgcccgggg aatttatcca accacgacat attgtgcgta gccataataa ctgtagttcc
     1801 tgaaagacgt atattgtaaa gtaattcgac taattcacta cccgtttgtg ggtctaggtt
     1861 tccggttggt tcatcggcca gaatcatttc gggcgaatta agcaaagcac gggcaataac
     1921 tatacgctgt tgctcaccac ccgataattg atgtggcatt ttgtaacctt ttgctctcat
     1981 accaacctga gtcaacacac tatcaatctg ttcatcaatt gagttttggt ctttccaacc
     2041 tgttgcccgc aacacaaaat ccaggttctg gctcactgtt ctatcggtaa gcaattgaaa
     2101 atcctgaaac acaataccaa tcttacgacg aaggaatgga acttcattta atttcaattc
     2161 ggtcaaatca tagccaagaa cgcccgccac accagaagaa acaggaactt cgtgatacat
     2221 tgatttgagc agcgatgttt ttccactgcc aactttgccg agcaaatata taaattcacc
     2281 t
//
LOCUS       DATDNM010000628         3361 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_931432, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000628 DATDNM010000000
VERSION     DATDNM010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3361
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_931432"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1289
                     /locus_tag="VI413_10695"
     CDS             <1..1289
                     /locus_tag="VI413_10695"
                     /inference="COORDINATES: protein motif:HMM:NF042769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6915134.1"
                     /translation="KLFLFRRPKASLNFVRRPEIAVKPTDRYQKEIFSNIQVVSDRLY
                     GKAKGYWTHVPYSNDPYITTLSKGLVKSFNDPELLDLKLDIYYPKTDLFKNRPCVMLI
                     HGGAFYIGSKESAAERELATTFAKRGYVVASIDYRLGFKLLPADIELSAYRAIQDAHA
                     ALRFLAHNAQGLGIDPNQIYVGGTSAGAMASLNVAFMDNDERPERIKQAYREGRLGRI
                     EESGNMYPEKFTIKAVANLWGGLSDLTIIDRDEKIAVLSIHGTADEIVPYENDYPFKN
                     AGMINRLVVDKMYGSKMIDDRLKILGLREKLVTLNGLGHEPELDNYKTLNRWMDTIKG
                     YCSQFFYEETAPEIKLPVNQLTVSPTDDIKPFYYEVNNGTVVEITVNGGVKTKADPKD
                     ASVIWLNNTEKNRTIEFLSTNKFEAWNKKKFSVIIK"
     gene            1491..1865
                     /locus_tag="VI413_10700"
     CDS             1491..1865
                     /locus_tag="VI413_10700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915135.1"
                     /translation="MIKIKLFFLVLFLFVFQLTFSYAQNADMMLIIMENNIEDQLLYE
                     NTSITQKVSGELQKNQFDALYNKQLLKCFLSNNNSKDFHFSIVQGDLLLNSVTPGHLF
                     NSCLNKKVMNVPIYLQTEKIRL"
     gene            2082..2891
                     /locus_tag="VI413_10705"
     CDS             2082..2891
                     /locus_tag="VI413_10705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005934642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEY6915136.1"
                     /translation="MKSNKKSSKGIKGVFSGAVIPTALVVSILVYIFVFGDGSNFVGG
                     NNANVPIPGNYYGIIYKGGPIVPIIITLLLTVLAFGVERFLAINKAAGKGKVISFVAD
                     INAKLDAGKIDEAKAACNTQKGSVANVIFSGLTKYQEMEREKTLPKDQKLVSIQKEIE
                     EATSLELPALEQNLVVLSTIASVATLMGLLGTVIGMIKAFSALANAGAPDSVQLAAGI
                     SEALINTALGIGTSAFAIIFYNFFTTKIDKLTYSIDEAGFTIVNTFAAKNN"
     gene            2906..>3361
                     /locus_tag="VI413_10710"
     CDS             2906..>3361
                     /locus_tag="VI413_10710"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEY6915137.1"
                     /translation="MPKVKVPRKSTTVDMTAMCDVAFLLLTFFMLTSNFVAKEPITVA
                     VPASVSEIKIAESDIITVLIDAQGKVFVGLDAQPDRKELLKKLGEAYQIDFTDKELTE
                     FSKIGMSGVPIHQMKGFLALPSEQRDSKEAAIGIPADSINNEFEQWIRNA"
BASE COUNT         1093 a          566 c          687 g         1015 t
ORIGIN      
        1 agaaattgtt tctattccgg cggccaaaag catccctgaa ttttgtgcgc aggccagaaa
       61 ttgccgttaa gccgaccgat cgttatcaaa aagagatttt cagcaacatc caggtggtga
      121 gcgatcgttt atatggaaag gccaaagggt actggaccca tgttccttat tcaaacgacc
      181 cgtatattac aacgctcagc aagggattgg tcaagtcgtt taatgatcct gaacttttgg
      241 acctgaaact ggatatttat tatcccaaga ccgacttgtt taaaaaccgg ccctgcgtga
      301 tgttgattca cgggggtgct ttttatatcg gcagcaagga atcggcggct gagcgtgaat
      361 tggcaacaac ttttgccaaa agaggctatg tggtggcttc tatcgactac cgcttaggat
      421 ttaaattgtt gcctgccgac attgagctga gcgcttaccg ggcgatccag gatgcccatg
      481 ctgcccttcg gtttttagcc cataatgcac agggactggg aattgatccc aatcaaatat
      541 atgttggggg caccagcgcc ggagcaatgg cctcgctcaa cgtggccttc atggataatg
      601 atgaacgccc tgaaagaatc aagcaggctt accgcgaagg caggctgggc cgtattgaag
      661 aatcgggaaa tatgtatccc gaaaagttta ccattaaagc agtggccaat ttgtggggag
      721 gcttgtctga ccttaccatt attgacaggg atgagaaaat agcggtactg tcaattcatg
      781 gcactgccga cgagattgta ccctatgaaa acgattatcc ctttaaaaat gctggtatga
      841 tcaatcgcct ggtagttgat aaaatgtatg gttccaaaat gattgacgac cggttaaaga
      901 tactggggtt acgcgagaag ctggtcacat tgaatggtct gggccatgag ccggaactgg
      961 ataattataa gactttgaac agatggatgg atactatcaa ggggtattgt tcccagttct
     1021 tctatgaaga aacagcgccg gaaattaagt tgcctgtaaa tcagcttact gtttcaccca
     1081 cagacgatat caaacctttt tattatgaag ttaataatgg aacagtcgtt gaaattaccg
     1141 taaacggggg agttaaaaca aaagcggacc ctaaggatgc ttcggtgata tggcttaata
     1201 atactgaaaa aaatcgtacc atagagtttt tgagtacaaa taaatttgaa gcatggaata
     1261 aaaagaagtt ttcagttatt ataaaataaa ggatgcaata ttttaaaaat attaattttg
     1321 tgtgtgttat tagagtttta tttataattt tgagctgaaa acattgaata atttatacaa
     1381 tttaaatgtt aaatttagat taataaattt ataagtaaca atcggtaatt taagaattaa
     1441 ataacttggc ggccagtttt gtaaaacaga ggcggataga tttaatagaa atgatcaaga
     1501 ttaaattgtt ttttttggta ttatttttgt ttgtttttca attaaccttt tcatatgcac
     1561 aaaatgcaga tatgatgtta atcattatgg agaacaatat agaagatcaa cttctatatg
     1621 aaaatacatc cataacacaa aaggtatctg gagagcttca aaagaatcag tttgatgcct
     1681 tatataacaa acaactatta aaatgttttt tgtcgaataa taattctaag gattttcatt
     1741 tttcaattgt tcaaggcgat ttgctgttaa attctgttac gcccggtcat ttatttaatt
     1801 cctgtctcaa caagaaagta atgaatgtgc cgatttatct tcaaacagaa aaaatccgtc
     1861 tatagccact ttctgtaacg gcaattgaac agtgaatatt tactatggat tatgaagaaa
     1921 atgctgttca tttaaacatt cattattcgg ctcaaaaaaa ataagtctgt tgaatatcaa
     1981 ccaatcatgg cattatcatg ttaaagaaaa ataagtaata ttagtatata acaattaaaa
     2041 gcatttttaa aaattaaatt ctcatattta aattaaactc aatgaaatca aacaaaaaat
     2101 cttcgaaagg aattaaagga gttttttcag gtgctgtaat accaacagct ttggttgtgt
     2161 caattctagt gtacattttt gtattcggtg acggatcaaa ctttgtaggt ggtaacaatg
     2221 caaacgttcc aatacctgga aactattatg gtatcatcta taaagggggt ccaatcgtgc
     2281 caattatcat tactttgttg ttaactgtat tggcttttgg tgttgagcgt tttcttgcca
     2341 tcaacaaagc tgcaggtaaa ggtaaagtaa ttagtttcgt agctgacatc aacgcaaaac
     2401 ttgatgctgg taaaattgat gaagctaaag ctgcttgcaa tactcagaag ggttcagtag
     2461 ccaatgtaat tttcagcggt ttgacaaaat accaggaaat ggaaagagaa aaaacccttc
     2521 caaaagatca gaagttagta tctattcaga aagaaattga agaagctact tctttggaat
     2581 tgccagcttt ggaacaaaac cttgttgtat tatcaacaat tgcttccgtt gctactttga
     2641 tgggtctgtt aggaacagtt atcggtatga tcaaagcatt ctcggctttg gctaacgctg
     2701 gtgctcctga ctcagtacag cttgctgcag gtatctctga agctttgatc aacacagctt
     2761 taggtattgg tacttcagct ttcgctatta tcttttataa tttctttact actaaaattg
     2821 ataaactgac ttattcaatt gacgaagccg gtttcactat tgtaaataca tttgctgcaa
     2881 aaaataatta agctaatata agaaaatgcc aaaggttaaa gtacccagaa agagcacgac
     2941 agtcgatatg actgctatgt gtgatgtggc tttcttattg cttacttttt ttatgcttac
     3001 gtctaatttc gttgcgaaag aacctattac cgttgcagta cccgcatcag tttcagagat
     3061 caagattgct gaaagtgata ttatcacggt actgattgac gcccagggaa aagttttcgt
     3121 aggattggat gcacaaccgg acaggaaaga attgttgaaa aaattgggag aagcttacca
     3181 gatcgatttt acagataagg agcttaccga attcagcaaa atcggaatgt caggagttcc
     3241 aattcatcag atgaaaggct ttttagccct tccaagcgaa caaagggaca gtaaagaagc
     3301 agcaatagga attcccgctg attcaataaa caatgagttt gaacaatgga tcagaaatgc
     3361 c
//
LOCUS       DATDNM010000629         3070 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1892617, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000629 DATDNM010000000
VERSION     DATDNM010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3070
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1892617"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..893)
                     /locus_tag="VI413_10715"
     CDS             complement(162..893)
                     /locus_tag="VI413_10715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915138.1"
                     /translation="MKINYLKLLLVFLCIVFVKIVAVAQVVNDTTVLKPENADSTYHW
                     TEPVLQPVNIDSIRQQKLDSENYLKSIEILEDRLKSNRKELRLSTDQANDEAKAISNE
                     RKTLAEKKKFAKDEEKFLKTEKNLRDKEIKQMISERKELNNKSKELYKDDFRDRIESL
                     DDKDRQIKNLESQWNEKRNDLKKSFDDIAEDERKLNLREVDVKNRLMELNRTKSALDL
                     KAKQLEVEKQQTKLEIKKSKALLKK"
     gene            1237..2844
                     /locus_tag="VI413_10720"
     CDS             1237..2844
                     /locus_tag="VI413_10720"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005820521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEY6915139.1"
                     /translation="MKDTKYIFVTGGVTSSLGKGIIAASLGKLLQARGFKVTNQKLDP
                     YINVDPGTLNPYEHGECYVTVDGHEADLDLGHYERFLGVETHKANNVTTGRIYQNVIN
                     KERRGDYLGKTVQIIPHITDEIKRNIKLLGSKGDFDFVITELGGTVGDIESLPYIESV
                     RQLRWELGNKCLIVHLTYVPYLAAAKELKTKPTQHSVKALQEQGVQADILVLRTEHNI
                     SMEMRKKVALFCNVEAGAVMQSIDVPTIYRVPLNMQEERLDEVVLTKMGYDLEKTPKA
                     DMEKWTAFVEKLENAKEEVRIAIVGKYVQLPDAYKSIIESLIHASAYNNRKLKLELIL
                     SDKLTDENIDKKLQKVDGIVVAPGFGQRGMDGKFEALKYARENNIPCLGICMGMQTMS
                     IEFARNVLGYVDANSTEIDANTTHNIVDIMDEQKNILDLGGSMRLGAFKCKLKKGSKA
                     YDIYKKENISERHRHRYEFNNAYKEEFEKAGMICSGMNVESDLVEIIELKSHKWYIGV
                     QFHPEYSSTVVNPHPLFISFVKAAIEK"
BASE COUNT         1023 a          578 c          528 g          941 t
ORIGIN      
        1 catctcacga ttagctaatc tgcgagtgcc accaccaaaa tttgtttatt gtcaaaatcg
       61 tgttcatttc tttttgattt attttcgggt gcaaagatga taaatttatt ttaattgagc
      121 aagaaaaata tcatttttcc caaactaatc tataaaacta attacttttt cagtaaagct
      181 ttcgacttct ttatttcaag ttttgtttgt tgtttttcca cttccagttg ctttgctttc
      241 agatcgaggg cactttttgt tcgattcaac tccatcaaac ggtttttcac gtcaacctcc
      301 cgtaagttca acttgcgttc atcctcagct atatcatcaa aacttttttt caaatcattg
      361 cgcttttcat tccattgact ttccagattt tttatttgcc tatccttatc atccaaactt
      421 tcaatccgat ccctaaaatc gtctttatac agttctttag acttattgtt caactcttta
      481 cgttctgaaa tcatttgttt aatctcctta tccctgagat ttttttcagt tttcaggaat
      541 ttttcttcat cctttgcaaa cttctttttc tcagccagag tttttcgttc gttacttatt
      601 gctttggctt catcatttgc ttgatcagta cttaatctta actcttttcg attactcttc
      661 aacctatctt ctaaaatttc gatacttttc agatagtttt cagaatctaa tttttgttgc
      721 ctgatagaat caatattcac tggctgtaaa actggctctg tccagtgata agtagaatct
      781 gcattctcag gctttaatac tgtggtatca ttcacaactt gtgcaaccgc aacgattttc
      841 acaaatacaa tacaaagaaa cactagcaat aactttaaat aattaatttt catagtagta
      901 aatgtttagg atcgacgaat aatcagataa tcttagcgtt tatttgaaac gttagaataa
      961 tcaaaaagtt caatatgtat tatcactttt cataacaatt tgaatttcaa acggacttcg
     1021 acatctcccc actttacttc gcgaaaaaaa cacctaaata tcaagcagtt acacaaataa
     1081 atattttaca attaaacttt ctacagcttg aaattaatcg gataactgac agaaacacaa
     1141 aagctgttat ttttctttcg ttattcagtt ttttttccga actttgcgga cttaaaaata
     1201 cgcaaaaaaa gacagtaatt ttaagaaaaa tttaaggtga aagatacaaa gtacattttc
     1261 gttaccggtg gagttacttc atcgttgggc aaaggaatta ttgccgcatc tcttggcaaa
     1321 ttattacagg cccgtggttt taaagttact aatcaaaaat tggatccgta tatcaacgtg
     1381 gatcccggaa ctttgaatcc atacgaacac ggcgaatgct acgtaacagt ggacggacat
     1441 gaagccgacc ttgacctcgg tcactacgaa cgctttttag gcgttgaaac tcacaaagca
     1501 aataacgtta ccaccggacg tatttatcag aatgtgataa ataaagaacg tcgtggtgat
     1561 tatttgggaa aaaccgttca aattattcct cacattaccg acgaaattaa gcgtaacatc
     1621 aaactgttag gcagcaaagg cgacttcgac tttgtaatta ccgaacttgg tggaaccgtt
     1681 ggcgatattg agtcattacc atacatcgaa agcgtacgtc agttgcgctg ggagcttgga
     1741 aataagtgtc tgattgtcca cttaacctat gttccttatt tggcagctgc caaagaatta
     1801 aaaacaaaac caacccaaca ctccgttaaa gcacttcagg aacaaggagt tcaggcggat
     1861 attctcgttc tgcgcaccga acacaacatt tcaatggaaa tgcgcaaaaa agtagctctt
     1921 ttctgtaatg ttgaggccgg agctgttatg caatctatcg acgttcctac tatttatcgc
     1981 gttccattaa acatgcagga agaaagactg gatgaagtgg tactgacaaa aatgggttac
     2041 gatctggaga aaacgccaaa agcggacatg gaaaaatgga ctgcatttgt cgaaaaactg
     2101 gaaaatgcca aagaagaagt acgtattgcc atcgtaggga aatacgtaca actacctgat
     2161 gcttacaaat ctataattga atcgttaatt catgccagcg cttacaacaa tagaaaatta
     2221 aaactggaac tgattttatc tgacaaactg acagacgaaa atattgataa aaaacttcaa
     2281 aaagtagatg gcattgttgt tgcaccggga ttcggccaac gtggaatgga tggaaaattt
     2341 gaagccctga aatatgcacg cgaaaacaac attccttgcc tgggaatttg tatgggaatg
     2401 caaaccatgt ctattgaatt tgcgcgtaat gtattaggat atgtcgatgc aaacagtacc
     2461 gaaattgatg caaacaccac acacaatatt gtggatatta tggatgaaca aaaaaacatc
     2521 ctcgatttag gtggaagtat gcgtttggga gcatttaaat gcaagctaaa aaaaggcagc
     2581 aaggcttatg acatttataa aaaagaaaat atcagcgaac gccatcgcca tcgctacgaa
     2641 ttcaacaatg cttacaaaga agaattcgaa aaagccggaa tgatttgcag cggaatgaat
     2701 gtagaatcgg atttggttga aatcattgaa ctaaaatcgc acaaatggta tatcggcgta
     2761 caatttcacc cggaatacag cagtacggtg gtgaatccgc atccattatt tatcagtttc
     2821 gtgaaagcag caatagaaaa ataaaatgtc ccaatgaaca atacaataat tgaaaattgg
     2881 aaactataaa attggaaatt tattaaacat ggataaaaat acgattatcg gatttgtact
     2941 gatactagca attgtaattg ggtacacaca gctgaacaag cctagtgagc aagaaattgc
     3001 aacacagcga tacaatgatt caattgcact tgttgagcaa aataaagttg aaagcaaaat
     3061 tgcaactaac
//
LOCUS       DATDNM010000630         2069 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2106678, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000630 DATDNM010000000
VERSION     DATDNM010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2106678"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2069)
                     /locus_tag="VI413_10725"
     CDS             complement(<1..>2069)
                     /locus_tag="VI413_10725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915140.1"
                     /translation="LGYTEVLSKTGSKTLFVANDSAFNEFYKSNPWGVTDYNRLTLAQ
                     KKLILNFGMINNAYLVDMLSNYNNAGLKEGAALRRETAISVLDSLPFNSNDQLPATAY
                     WQYYKTKGLYLLKDNTPWTLVYFTQKHLEQAQITNEDFNIITGLSRNQNDAHVFGIKI
                     IKKDITCKNGYLNVLERVMIPPVNMAEYVLTNPDMSRFSSLLERFSAPFFDAASTLQY
                     RQLHPEFADSIFVKKYFARAGGMMRYPSGSTAVPLDLLLPFDPGWNSYERTTSGYALE
                     SDMAAMFVPSNDAMNTFFNSGAGAVLKDRFGSWDDVPTDILPLFIKRHMRSSFVESVP
                     SRFSTMVDEDNSPLPVSKGDIEKVYVGSNGVVFQTNKVYPPDDYSSVYGPVLLSANDA
                     SPVNKTKIWKWAITQNDFRLYLNSLVSRYSFFVPTDEYFKNYIDPVAIAKDVPGALKF
                     WYNTKTSAVNATVYKFDKATGQLGDSVAIITSPAFLTNRMSDMLNSHIVVGNVESGKN
                     YYLTKGNVALKVSGTGTAMTVQGGENMKLGETVNVTRAYNQSNGNTYFIDRPIQSPLT
                     SVYKVLSETPAFSSFFSLLIGFPASSSSVIFVSKSNYFGIDFNVKFFNTFNYTVYVPT
                     NAAIDQAIQDGIIKPWESQGSIVGINALTNATEKAAAISNLERFIRYHFQDNSVFVDN
                     QSFERVY"
BASE COUNT          623 a          457 c          392 g          597 t
ORIGIN      
        1 tggtaaactc tttcgaacga ctgattatca acaaacaccg aattatcctg gaagtggtaa
       61 cgaataaacc gttccagatt agatatggca gcagcctttt cagtagcatt cgttaaggca
      121 ttgataccaa caatcgagcc ctgagattcc catggtttga taattccatc ttgtatggcc
      181 tgatcaatag ctgcatttgt cggaacatat accgtataat taaatgtgtt gaaaaacttg
      241 acgttaaaat caattccgaa ataattcgat ttgctgacaa aaatcacaga actgctcgac
      301 gccggaaatc caatcagaag agagaaaaat gagctgaatg caggtgtttc gctcaacact
      361 ttgtataccg aagttaaagg cgactgtatt ggacgatcga tgaaatatgt atttccattt
      421 gactggttgt aggctcttgt tacatttacg gtttcaccca gtttcatatt ttcacctccc
      481 tgaacagtca ttgcagtacc cgttcccgaa actttcagtg ccacatttcc tttggtcaga
      541 tagtaatttt taccagactc tacatttcct acaactatgt gggagttgag catgtccgac
      601 atgcggttcg tcaaaaacgc cggagacgtt attatggcta ccgaatcgcc taactgcccg
      661 gtggctttat cgaatttata tacggtagca tttacagccg acgttttggt gttgtaccaa
      721 aatttcaagg ctcccggaac atcttttgca atagccacag gatcaatata attcttgaaa
      781 tactcatcag ttggcacaaa gaaactatat ctgctcacta atgagtttag gtataaccgg
      841 aaatcgtttt gagtaatagc ccatttccag attttggttt tatttaccgg ggatgcatcg
      901 ttggcactca acaataccgg accataaacc gaactataat catccggcgg atatacttta
      961 ttggtttgga ataccacccc gtttgaaccc acatacactt tctcaatatc cccttttgaa
     1021 actggtagcg gagaattatc ctcgtccacc attgtagaaa aacggcttgg aaccgattca
     1081 acaaaggaac tgcgcatgtg acgtttaata aacaatggca aaatatcggt cggaacatcg
     1141 tcccacgaac caaaacgatc ttttaataca gctccggcac ctgagttgaa aaatgtgttc
     1201 atagcatcat ttgatggaac aaacatagcc gccatatccg attccagcgc atacccactg
     1261 gtagtacgct cgtaactatt ccatcccgga tcgaaaggca acaataagtc cagcggtaca
     1321 gctgttgatc ccgacggata acgcatcata ccacctgcac gggcaaaata tttcttcacg
     1381 aaaatagaat cagcaaattc aggatgcaac tgacggtatt gaagtgtgct ggcagcatca
     1441 aaaaatggcg cactgaaccg ttccaatagt gatgaaaacc tactcatatc cggattggtc
     1501 aaaacatatt cagccatatt aaccggtgga atcattaccc gttcaagtac attcaggtaa
     1561 ccatttttac aggtaatgtc ttttttgatt attttaatac caaaaacatg agcatcattc
     1621 tgattacgac tcaaccctgt gataatattg aaatcttcat tcgttatctg agcttgttcc
     1681 aaatgtttct gggtaaaata aaccagcgtc cagggcgtgt tgtctttaag tagatacaat
     1741 cctttggttt tataatactg ccaataagca gtagcgggta actggtcgtt agagttaaat
     1801 ggcaaactgt ctaaaacaga aatagctgtt tcccttctca acgctgcgcc ttctttcagc
     1861 cctgcgttat tgtaattgga aagcatatcc accaggtagg cattatttat cataccaaag
     1921 ttcaggataa gtttcttctg ggccagcgtc agacggttat aatccgttac gccccatggg
     1981 ttgcttttat agaattcatt aaaagcagag tcattagcca caaaaagagt tttacttcct
     2041 gtcttactca atacttcggt ataacccaa
//
LOCUS       DATDNM010000631         4341 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1571733, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000631 DATDNM010000000
VERSION     DATDNM010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4341
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1571733"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1871
                     /locus_tag="VI413_10730"
     CDS             <1..1871
                     /locus_tag="VI413_10730"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY6915141.1"
                     /translation="TVADIPLTAGKHVLKIAFSAGEFNLGKMTFTRTGDLTNSYPSAN
                     AGTDLKVVLPATSATLNGSASYESSGKALAYRWKQIYGPTTAVISDSTATKPIVSGLA
                     EGMYSFRLIVKNTDLRYSTDEVLVMVTSTANVAPTVSLTSPANNSTFTEGKPVTLSAN
                     ASDFDGTISQVDFYQGTTLISSVTTAPYSATWNPAAGNYAITAKATDNGGGVSTSQAA
                     NVTISPLMSCTTTSTTATQGSFAVGYKCTFETVGTDVTITFEMLDDKAGVIAYLWRET
                     PFGESAMANVSGKIFSTTISGQTSGSTISYACKFAYTGGMSVTKYMTYVVGTNCGSTT
                     NDTQAPTGFSATLGAVTANSVELLLNATDNSGNVVYNVSYGSNTASTSTASGTQKSLL
                     ITALTAGTPYTFSVTASDLAGNQAGNNPIVISATTAANTNTDCAGTASEASQGTFSVG
                     YKYGFVTTGTDVSISFELLDDKTGLVAYLWNYTSGFAESAMTNGGGKKFTKTLTGQTA
                     GSVIKVACKFAYAGGMVVTKQFSYTVGNACAGTAVETVNSSEPFFYPNPFQNVLHIEL
                     PDENSRLMLYDIVGNKVFDGQVPSMYNLDMSGLKTGIYFLKAESSRGIMDGKVVKK"
     gene            2158..3066
                     /locus_tag="VI413_10735"
     CDS             2158..3066
                     /locus_tag="VI413_10735"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEY6915142.1"
                     /translation="MNKGIKSMIAAFLLLSALPAFAQADGSDKYKLVWEDNFSKPVLD
                     EANWTIVVNGKGGGNRELQYYRKENISIGKEPVSGENCLIITAKKENYRCKKATSGRL
                     STQGKASVKYGKIEARIKLPKTANGLWPAFWMLGSDYPKAVWPKCGEIDILEMGNANG
                     IEAGTQDKLFNGACHWGERFNHGRYPNFAKATTNPFSLQEDFHLFTLIWDEKNIKMYL
                     DLDKNPAAIPYFEMPVNGENVANNPARYFHKEFFVIFNLAVGGNFTKIRNIDNITALK
                     EGDAKMYVDYVRMYQKGVDGESFNSK"
     gene            3085..>4341
                     /locus_tag="VI413_10740"
     CDS             3085..>4341
                     /locus_tag="VI413_10740"
                     /inference="COORDINATES: protein motif:HMM:TIGR00792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6915143.1"
                     /translation="MEKTATKLSFKEKVGYSLGDTASHFVWDMVGFWLLFFYTDVYGI
                     SAAAAGTIMLIARFWDMAIDPIIGVVSDRTNTRWGKFRPYILFGAVPYAILAILTFTT
                     PDFGEVGKIIYAGATYVLLMTAYAFINLPYSALGAVMTDDTYERAGLNTYRFIAGFSG
                     QFIVTGLALTLANFFGHGNKAQGFQYTVFLFAALSLVFFFITFQTTKERVKPPKEQKN
                     SLKEDLKNLFANKAWRILAIVGIVSFIMFAMQNAAIAYYFKYYLGKEDNVQLFNVIGT
                     VALIVALPLSKPLAKRFGNKNVFIGSSLISGLFFILIYLARVQDIYTIYAFNIIAKMA
                     YAPAVPLLWTMIADSADYGEWTTGRRATGLYFSAAVFAQKAGWGIGAAIAGWILTLSQ
                     FVPNVTQTDTAITGIKLLVSVIPGVLY"
BASE COUNT         1240 a          806 c          990 g         1305 t
ORIGIN      
        1 aaacggtggc tgacattccg cttacagccg gcaaacatgt tttgaagatt gctttttctg
       61 ccggagaatt taatcttggt aaaatgactt tcacacgcac cggtgatttg actaacagtt
      121 atccatcggc caatgcaggt acagatctaa aagtcgtttt gccggcaact tcggcaacac
      181 ttaatggttc ggcaagttac gaatcttcag gaaaggcact ggcttatcgc tggaagcaga
      241 tttatggacc gacaacggct gttatttccg attccaccgc tacaaaacct atagtttcag
      301 gccttgcaga aggaatgtac agttttagac tgatagtgaa aaatacagat ttgagatact
      361 cgaccgatga agtattggtt atggtaacca gtaccgcgaa tgtagcccca accgtttcgt
      421 tgacttctcc ggcaaataat tcaacattta cggaaggaaa accggtaact ctttctgcta
      481 atgcaagtga tttcgacgga acgatttctc aggttgattt ttaccaggga acaactttga
      541 tttcgagtgt aacaactgct ccgtattctg caacctggaa tcctgctgcc ggtaattatg
      601 cgattactgc caaagctact gataatggcg gaggagtaag cacttcgcaa gcagccaacg
      661 tgacaatttc tccgttaatg tcctgtacaa ctacttcaac cacagccaca caaggctcat
      721 tcgcagttgg ctataaatgt acttttgaaa cggtaggcac cgatgtgact ataacttttg
      781 aaatgctgga tgacaaagcg ggcgtaattg cttatttgtg gagagaaact ccgtttggcg
      841 aatcggctat ggcgaatgtt agcggaaaaa ttttctccac tacgattagt ggtcaaactt
      901 ccggttcgac aataagctat gcctgtaagt ttgcttatac tggcggaatg tcggtcacca
      961 aatacatgac ttatgtggta ggaacaaatt gcggaagcac gaccaatgat acgcaagcgc
     1021 caactggctt ttcggctaca cttggtgctg taacggccaa ttcggttgaa ttactgctca
     1081 atgccaccga taattcggga aatgtcgttt acaacgtgag ttatggctct aatactgcaa
     1141 gtacgtcgac tgcttccgga actcaaaaat cgctgctgat tacagctctg actgcgggta
     1201 cgccttatac tttcagtgtt actgcaagtg atttggcagg caatcaggcg ggaaataatc
     1261 cgattgtgat ttcggcaaca actgctgcga atacaaatac tgattgtgcc ggaactgctt
     1321 cagaagcatc gcagggaaca ttcagcgtgg gttataaata tggtttcgta accacaggaa
     1381 cggatgtgtc tatcagtttt gaattgctcg atgacaaaac aggacttgtg gcttatttgt
     1441 ggaattacac ttccggtttt gcggagtcag ctatgacaaa tggtggtggc aagaaattta
     1501 ctaaaaccct gactggtcaa actgcaggtt cggttataaa agtggcttgc aaatttgctt
     1561 atgccggagg catggtggtt actaagcaat tctcgtacac ggttggaaat gcctgtgccg
     1621 gaactgctgt tgaaactgta aactcgtcag aaccattctt ctatccaaat ccttttcaaa
     1681 atgtcttgca tatagaactt ccggatgaga actcccgatt gatgctttat gatattgttg
     1741 gcaacaaagt ttttgatggg caggttcctt caatgtataa tcttgacatg agcggactga
     1801 aaacaggaat ttatttctta aaagcagaaa gctcacgtgg aataatggac ggaaaagtag
     1861 ttaaaaaata aagtgatttt cagcaactgt tttatagact acaaccataa aacagttgcc
     1921 ttaaaaacga tcaattttag taaaaatgga ctattgaatt gtggactaag atgtgtttca
     1981 aaacagcata agatctatat gcctgaaaat caattgaact gaatgatctt ttgtagtgat
     2041 tttgtgtagt ttaaagcgct ttgtaatgag tttttgtgag gagaaaaatt gctctgctaa
     2101 tttgaataaa tttaattttg tgtttgaaaa ataggtcttg aaataaaatt taaaagtatg
     2161 aacaaaggaa ttaaaagtat gatcgcagct ttccttctgc tttcggcact tcctgctttt
     2221 gcgcaggcag atggatcgga taagtataag ctggtgtggg aggataattt tagcaagcca
     2281 gttttggatg aggcgaactg gaccattgta gtaaatggaa aaggtggtgg taaccgtgag
     2341 ttgcagtatt accggaagga aaacatctcg ataggcaaag aacccgtttc aggtgaaaac
     2401 tgccttatca taactgcaaa aaaagaaaat tatcgatgca aaaaagcaac ttccggtcgt
     2461 ctttccacac aaggtaaagc gtcggtgaaa tacggtaaaa ttgaagcacg tattaaatta
     2521 ccaaaaactg ccaatggttt gtggccggca ttttggatgc ttggtagcga ttatcccaaa
     2581 gcagtatggc ctaaatgtgg cgaaattgat attcttgaaa tgggaaatgc aaatggaatt
     2641 gaggctggaa cccaggataa attgtttaac ggtgcatgcc attggggcga acgttttaat
     2701 catggacgtt atccgaactt tgcaaaagca acaaccaatc ctttttcttt gcaagaggat
     2761 tttcatctgt ttacattgat ttgggatgaa aaaaacatca aaatgtattt ggatctggat
     2821 aaaaatccgg cagcaattcc ttatttcgaa atgcccgtca atggtgagaa tgtggccaat
     2881 aatccggcac gttattttca taaggaattc tttgtgattt tcaatctggc ggttggtggc
     2941 aattttacta aaatcagaaa tattgataat attacagctt taaaagaagg ggatgccaaa
     3001 atgtatgttg attatgttcg catgtatcaa aagggtgtgg atggtgagtc gtttaattcg
     3061 aaataaaatt ttagatcaaa gtatatggaa aaaacagcaa cgaaattatc tttcaaagag
     3121 aaagtcggat atagtttagg cgacaccgct tcgcattttg tgtgggacat ggtcgggttt
     3181 tggcttttgt ttttctacac ggatgtctat ggtatttcgg ccgctgcagc cggtaccatt
     3241 atgctgattg cacgcttctg ggacatggct atcgatccga ttattggtgt tgtttctgac
     3301 cgcacgaata cacgttgggg gaaattccgt ccatacattt tatttggggc tgttccatat
     3361 gccattttgg ccattttgac gtttaccacg cctgattttg gcgaagttgg aaaaatcatt
     3421 tacgccggag caacttatgt gcttttaatg acggcttatg catttatcaa tctgccatat
     3481 tcagccctcg gagctgttat gaccgatgac acttacgaac gtgccggatt gaatacctat
     3541 cgttttattg ccggtttcag cgggcagttt attgttacag gattagcact aactttggca
     3601 aacttttttg gacatggaaa caaggcacag ggattccagt ataccgtatt tttatttgcg
     3661 gcgctgagtt tggtgttctt ttttattact ttccagacca ccaaagaacg cgttaaaccg
     3721 cctaaagaac agaaaaattc gttgaaagag gatttgaaaa acttgtttgc aaataaggca
     3781 tggagaattc ttgctatcgt cggcattgtg tcgtttatca tgtttgccat gcaaaatgcc
     3841 gccattgctt attattttaa gtattatctg ggcaaagaag ataacgtgca gttattcaat
     3901 gtgattggaa ctgtagcgct tatcgtggct ttgccattat ccaaaccatt ggcaaaacga
     3961 tttggaaata aaaatgtatt tatcggcagt tcgttgatct cgggattgtt ttttatactc
     4021 atttatttgg ctcgggtgca agatatttat acaatttatg cattcaatat tatagctaaa
     4081 atggcttatg cacccgctgt tccgctgctg tggaccatga ttgccgattc ggctgattac
     4141 ggcgaatgga ctaccggtcg ccgcgccacg ggattgtatt tttcggctgc cgtttttgct
     4201 caaaaagcag ggtggggaat aggtgccgcc attgccggct ggattctgac tctttcgcag
     4261 tttgtgccga atgtaactca aaccgatacc gccattacag gtatcaaact gttggtttca
     4321 gttattccgg gtgttttgta t
//
LOCUS       DATDNM010000632         2179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1466300, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000632 DATDNM010000000
VERSION     DATDNM010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1466300"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(193..447)
                     /gene="rpsT"
                     /locus_tag="VI413_10745"
     CDS             complement(193..447)
                     /gene="rpsT"
                     /locus_tag="VI413_10745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005830420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEY6915144.1"
                     /translation="MANHKSSIKRIRQTDKKKLHNRYYAKTARNAVRKLRGTADKTVA
                     TEMLPKISAMLDKLAKRNIIHKNKASNLKSKLAVYVNKLA"
     gene            complement(488..559)
                     /locus_tag="VI413_10750"
     tRNA            complement(488..559)
                     /locus_tag="VI413_10750"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(524..526),aa:Glu,seq:ttc)
     gene            777..1499
                     /gene="recO"
                     /locus_tag="VI413_10755"
     CDS             777..1499
                     /gene="recO"
                     /locus_tag="VI413_10755"
                     /inference="COORDINATES: protein motif:HMM:TIGR00613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEY6915145.1"
                     /translation="MQVKTTGIVLHSIKHTDSSSIITVYTRQFGRVSYMIHGANKKKS
                     LVRAALVQPLSLIDLDVFHTPGKDIQRIKDIRMEYQFTGIPFDPVKNSLALFISELLF
                     RTLRQTEPDDSLFLFLDNSIQQLDCCETGIANFHLVFLLKLSRYLGFEPNRDEDDANY
                     FDLMNGVFLKNKPLHIHYLLPDVSVDFNKVLLADYANMGNLAFTRARRVKLLESMIEY
                     YRLHIPEFHGLHSLAVLQSLFE"
     gene            complement(1512..>2179)
                     /locus_tag="VI413_10760"
     CDS             complement(1512..>2179)
                     /locus_tag="VI413_10760"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEY6915146.1"
                     /translation="VPATASTQITSPVDATEAAPVVSSGTTRAESSSSKSELKQKPTT
                     YKVRKGDNLNTIASKFNISIDDLKEINNLQKNKITVGQELKISQTVAASNSKESVQKP
                     ESPANAVTHKVRKGENLASIAEKFNMTVDELKDLNGLTSSKINYGQQLVVSQLSSEKT
                     KKAALKAEPKQKTIHHKVKSGESYYSIAHKYDCSVNDLKEWNRKSSTKIQPGDVIIIK
                     AKK"
BASE COUNT          592 a          416 c          404 g          767 t
ORIGIN      
        1 taatctaatg cacacaactt ttccgattga tccaaaaaat tattattttt aatctaatgc
       61 acacaacttt tccgattgat cccaactttt ccgattgatc caaaataata acttgcataa
      121 atccaaatat agcgatgaca aaaaggccct tttccaattg gaaaagggct tctgtatata
      181 agtgagaagc tattatgcta atttgttcac gtaaacagct aactttgatt tcaagttgct
      241 tgctttgttt ttgtgaatga tattgcgttt agctaattta tcaagcattg cactgatctt
      301 aggtagcatt tcagtagcta cagtcttatc agcagtacca cgtaatttgc gcacagcgtt
      361 acgagctgtt tttgcataat aacgattgtg caattttttc ttgtcagttt gacgaattct
      421 cttgatagat gatttatgat ttgccatcgc agcttttttt taatctgtaa atttcttatt
      481 tctttagtag tccctagggg agtcgaaccc ctctttccag gatgaaaacc tggcgtccta
      541 accgatagac gaagggacca aatggtcagt tgtgctagtg agtagttgtt ctcaattgcg
      601 ggtgcaaata tacggcactt ttttgaattg gcaaagcctt taaaagaaat atttctatct
      661 tttttctaat ttgctatcta tcaggctatc atattttagt tgatttgcaa ttttagggat
      721 aaatgctgcc ttcgacctga attattgctt atatttgtag tcttatcata ctttttatgc
      781 aggtaaaaac caccggaatc gtacttcact cgataaaaca taccgattct tcatcaatta
      841 ttacagtata cacacgacaa tttggccgcg tgtcgtatat gattcatgga gcaaacaaaa
      901 agaaatcatt ggttcgcgca gcgctggtgc aaccattgtc tctgattgat ttggacgtat
      961 tccacactcc aggcaaggac atacagcgca taaaagacat tcgaatggag taccagttca
     1021 ccggcattcc gtttgaccct gtaaagaact cgcttgccct atttatttca gaattacttt
     1081 tccgaacgtt acgacaaacc gaacccgacg atagtttatt cttgtttctt gataattcga
     1141 tacagcaact ggattgttgt gaaacgggaa ttgcaaattt tcatttggtc tttctgctca
     1201 aactttcgcg ttatttgggg tttgagccaa accgggatga agatgatgcc aattattttg
     1261 atctaatgaa cggtgtattt ctaaaaaaca aaccgctgca tatacattat cttttaccgg
     1321 atgtttcagt ggacttcaac aaggtgttgt tggcagacta tgccaacatg ggaaatctgg
     1381 catttacaag ggccaggcgg gttaaactac tggaaagcat gatagagtac tacagattac
     1441 atatccccga atttcacggg ctacattcac ttgcggtgct tcagagttta tttgagtaag
     1501 aaaagcagtt actatttttt agctttaatg attataacat ctccgggttg gattttagta
     1561 ctggattttc tattccattc cttcagatca tttacactac agtcgtattt gtgagcaata
     1621 gaataataag attcacctga ttttacctta tgatgaatcg ttttttgttt tggctctgct
     1681 tttaatgcag ctttttttgt tttttcggag gacagttggc ttactacaag ctgttgcccg
     1741 taattaatct tactacttgt aagtccgttc aggtctttca attcatcaac agtcatattg
     1801 aatttctctg caatacttgc cagattttcg ccttttctta ctttatgggt gactgcattt
     1861 gcaggtgact caggcttttg aacactttct ttcgagtttg acgcagcaac tgtctgagaa
     1921 attttcaact cctgtcctac agtaatcttg ttcttttgaa gattatttat ctcctttaag
     1981 tcatcaatgg atatattgaa tttgctggca atggtgttta aattatctcc ttttctaacc
     2041 ttataagtag ttggtttttg tttcaactcc gatttagagg atgatgattc tgcacgagta
     2101 gtacctgaac ttacaacagg agctgcttcc gtagcatcaa ccgggcttgt aatctgagtt
     2161 gaagccgtag ctggcacag
//
LOCUS       DATDNM010000633         3540 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1038560, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000633 DATDNM010000000
VERSION     DATDNM010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1038560"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1090
                     /locus_tag="VI413_10765"
     CDS             <1..1090
                     /locus_tag="VI413_10765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004560 - alpha-L-fucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEY6915147.1"
                     /translation="KYKLPFGISVHASHAWTFYEPAQGADTSGVYKGVPYDGKLTKAD
                     GKGTWWEGLDPQELYAQNHALSKGWGWEWQKWVTPPSQEYCDKFYNRTMDLINKYNPD
                     LVYFDDTALPLYPVSDAGLKIAAHYYNHNMATHHGKLEAVLFGKILTEEQKKCMVWDV
                     ERGAPDKGQDLAWQTCTCIGDWHYNRGRYTGNYYRSTANVIYTLIDIVSKNGNLLLNI
                     PVRGDGTIDDKEVAVLEGIAKWMKINKESIFDTRPWNVYGEGPSVEEKNPMKEQGFNE
                     GKIKFSAKDIRYAQKDKTLYVSLLGIPTEDIYMKSLGKSNLKEKIRSVKLLGSNEKLI
                     WKQNADSLVIQKPKNFPNDISVVFVIQK"
     gene            1228..>3540
                     /gene="xyl3A"
                     /locus_tag="VI413_10770"
     CDS             1228..>3540
                     /gene="xyl3A"
                     /locus_tag="VI413_10770"
                     /EC_number="3.2.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009130085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009044 - xylan 1,4-beta-xylosidase
                     activity [Evidence IEA];
                     GO_process: GO:0045493 - xylan catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xylan 1,4-beta-xylosidase"
                     /protein_id="HEY6915148.1"
                     /translation="MRKSVLIAMFILTSLAGWAQQFPYQNPALNSDQRAADLIPRLTL
                     QEKAALMCDESEAVPRLGIKKFYWWSEALHGIQHGYNVTVLPQSIGMAASFDDKLVFD
                     AFTAISDEFRAKYHEAIRTGRENGKFQSLSVWTPNINIFRDPRWGRGQETYGEDPYLT
                     SRIGVAVVNGLQGPADSKYKKLLACAKHFAVHSGPEWSRHSLNVNNVNPRDLWETYLP
                     AFKTLVQEAGVREVMCAYQRVDDEPCCGSTRLLQKILREDWGFKYLVVSDCGAITDFY
                     STHKVSSTDVHAASKAVLSGTDVECGWGYAFKKLPQSVDKGLIDEKEMDKSLARVFAG
                     RFDLGEMDNDSIVPWSKIPMSVVDCQQHKDIALRMAQESQVLLQNKNNILPLSKSVKK
                     IAVIGPNADDKPMLLGNYNGFPSSITTILEGVKTKLPADKILYDKGCDLVEDKITQSL
                     FDNCLFEGKAGLKSTYWNNKEFSGEAVAVEQLTSPVHLTTAGQNRFARGVILRNFSGK
                     YQTVYQATKSEEIVIRLEFAGKSHVIVNNDTLFNKEVWQIAPIRLPFKVEKGKDYKIE
                     VGYSAIYKDMDASLKLNIGKEIPVDNTALIQKLKGIEEVIFVGGISPKVEGEEMPVEF
                     QGFKGGDRTNIELPESQRKCLQALKKAGKKVIFVNCSGSAVALTPETESCDAILQAWY
                     GGQSGGQAVADVLFGDYNPSGKLPVTFYKNSDKLGDFEDYSMKGRTYRFTDDALFPFG
                     YGLSYTTFKIGEAKLSKTTIKTDESIQLTVP"
BASE COUNT         1094 a          645 c          831 g          970 t
ORIGIN      
        1 aaaatataaa cttcctttcg gtatcagcgt gcacgcttct catgcctgga cattctacga
       61 acccgctcag ggcgcagaca cttccggagt gtacaaaggt gtaccttacg atggaaaatt
      121 gaccaaggct gatggaaaag ggacctggtg ggaaggattg gatccgcagg agctttatgc
      181 gcaaaaccat gcgttaagta aaggttgggg ctgggaatgg caaaaatggg taactccgcc
      241 ttcgcaggaa tactgcgata agttctacaa ccgcaccatg gatttgatta ataaatacaa
      301 tcctgatttg gtctattttg acgatacggc gttgccgctc tacccggtaa gcgatgccgg
      361 tttgaaaata gctgcacatt attacaacca caatatggcc actcaccacg gaaaattgga
      421 agccgtattg tttgggaaaa tccttaccga agagcaaaaa aaatgtatgg tttgggatgt
      481 ggaacgtggc gcaccggata agggtcagga cttagcctgg caaacctgta cctgtattgg
      541 tgattggcat tataatcgtg gacgttatac gggaaattat tacagatcta cagctaatgt
      601 tatctatacg ctgattgata ttgtcagcaa gaatggaaac cttctgctta atattcctgt
      661 acgtggcgat ggtacgatcg atgataagga ggtggcagta ttggaaggta ttgcaaaatg
      721 gatgaaaata aacaaggaaa gtattttcga cacccgacca tggaatgttt atggcgaagg
      781 accaagtgta gaagaaaaga atccgatgaa agaacagggt tttaatgaag gtaaaatcaa
      841 attttcagcg aaagacattc gttatgcaca gaaagacaaa actttatatg tatcattgtt
      901 agggatacca acggaggata tttatatgaa atcacttggt aaatccaatt taaaggaaaa
      961 aatcaggagt gtgaaacttc ttggcagtaa tgaaaaactc atttggaaac aaaatgctga
     1021 ttcattagta attcaaaaac ccaaaaactt tccaaatgat atttcggtag tatttgtgat
     1081 acaaaagtga ccctttgatt caaattaaat tttgtttttt tgtaaaggaa aactggaata
     1141 ggtctgttcg gaaatttcgt tcagaccatt tccattcttt ttaagatttg aaacctgaaa
     1201 aatataattc taactacgca taaaaagatg agaaaatcag tgttgattgc aatgtttatt
     1261 ttaacctcat tggcaggttg ggcacaacag tttccttatc aaaatcctgc attaaattca
     1321 gatcagcgag cagctgattt aattccacgg ctgactttac aagaaaaagc agcgttgatg
     1381 tgtgacgaat cggaagctgt tccgcgtttg ggtatcaaaa agttttactg gtggagcgaa
     1441 gccttgcatg gcatacagca tggatataat gttacggttc ttccgcaatc tatcggaatg
     1501 gctgcatcgt ttgacgacaa acttgttttt gatgctttta ctgcaatatc cgatgagttt
     1561 agagctaaat accacgaagc tatcagaact ggtcgcgaaa acggcaaatt ccagagcttg
     1621 tcggtttgga ctcccaatat aaacattttt cgtgatccgc gctggggacg cggtcaggaa
     1681 acttatggcg aagacccata cctgacttcc cgaatcggag ttgcagttgt aaatggtctg
     1741 cagggccctg ctgattcaaa atacaaaaaa ctgttggcct gtgccaaaca ttttgcggtt
     1801 cattcgggtc cggaatggag ccggcatagc ttgaatgtca ataatgtaaa tccacgtgat
     1861 ttgtgggaaa cctatctgcc tgctttcaaa actctggttc aggaagctgg tgtgcgcgaa
     1921 gtaatgtgcg cctatcaacg tgtagatgat gaaccttgct gtggaagtac ccgcttgttg
     1981 caaaaaattc ttcgggagga ttggggtttc aaatacctgg ttgtttccga ctgtggagct
     2041 attaccgatt tttacagtac gcacaaagtt tcctctactg atgttcatgc tgcttcgaag
     2101 gcagtcctat ccggaaccga tgtggagtgt ggctggggat atgcattcaa gaagttgcca
     2161 cagtcggtag ataaaggatt aattgatgaa aaggaaatgg acaagagtct tgcccgggtt
     2221 tttgcaggcc gtttcgattt gggcgagatg gacaacgatt caatagttcc ctggtcgaaa
     2281 atccccatgt cggtggtgga ttgccagcaa cacaaagata ttgcactcag aatggctcag
     2341 gaatctcagg ttttgctcca aaataaaaac aatatccttc ccttgtctaa atcagtaaaa
     2401 aaaatagctg ttattgggcc taatgccgac gacaaaccta tgctattggg caattataat
     2461 ggtttccctt ccagtattac cactatttta gaaggcgtta aaactaaact tccagctgat
     2521 aaaatattgt acgataaagg ttgtgatttg gttgaagata aaataaccca aagtcttttt
     2581 gataattgtt tgttcgaagg aaaagcaggt ctgaagtcaa catactggaa caacaaagag
     2641 ttcagtggtg aagcagtggc tgttgaacag cttacaagtc cggtacattt gacaactgcc
     2701 ggtcagaacc ggtttgctcg tggggtcatt ctcagaaact tctcagggaa atatcaaacg
     2761 gtttatcagg ctaccaaatc cgaagaaatt gtaataagat tggaatttgc cgggaaaagc
     2821 catgtgattg taaataatga cactttgttt aataaagaag tgtggcaaat tgcgcctatc
     2881 aggcttccgt ttaaagtaga aaagggcaaa gattataaaa ttgaggtcgg atattctgca
     2941 atttacaaag atatggatgc cagcctgaaa ttaaatatag gcaaggaaat cccggtagat
     3001 aatacggcat tgattcaaaa actgaaagga atagaagagg tgatttttgt gggtggaatt
     3061 tctcctaaag tagaaggtga agaaatgcct gtcgagtttc aaggctttaa aggaggcgac
     3121 cgaaccaata tcgaacttcc tgaatcgcaa cgcaaatgtt tgcaggcatt gaaaaaggct
     3181 ggcaaaaaag tgatatttgt aaactgctca ggttcagctg tagctttgac acctgaaacc
     3241 gagagttgcg atgccattct tcaagcgtgg tatggtgggc aatcgggcgg gcaagccgtg
     3301 gccgatgtct tgtttggcga ttacaaccct tcgggaaaat tgcctgtaac attttacaaa
     3361 aattcggaca aactgggcga ttttgaggat tactcaatga aagggcgcac ctaccgtttc
     3421 actgacgatg cgcttttccc ctttggatat gggttaagct ataccacgtt caaaattgga
     3481 gaggctaaat taagcaagac tacaatcaaa acggatgaat caattcagtt gactgttcct
//
LOCUS       DATDNM010000634        11021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_931869, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000634 DATDNM010000000
VERSION     DATDNM010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 11021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11021
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_931869"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..390
                     /locus_tag="VI413_10775"
     CDS             <1..390
                     /locus_tag="VI413_10775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915149.1"
                     /translation="LSHLEDILTNQRNSTAFLAIDDTDDGVTIKRGGGYYNRRAIFVY
                     VLKKFNTKSQEDREEKVAETRLIHKSLLSKLIIDKNSVDGLMFLDENRIPYHEVPGMF
                     VAETCGLYFSFTIEEPTNLVYDANDWE"
     gene            368..736
                     /locus_tag="VI413_10780"
     CDS             368..736
                     /locus_tag="VI413_10780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915150.1"
                     /translation="MMQTTGNKNDYYRAWAKMMVTIWLDKIAALNIRDTGELFKSFDT
                     ELTMQANGDVDKIVFSYLYYGRMVDMGVRRGIKMDEAGKKGKPWYNKAWYHSIKVMTE
                     KRSELYGEEFQAIIFETLNF"
     gene            793..2310
                     /locus_tag="VI413_10785"
     CDS             793..2310
                     /locus_tag="VI413_10785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915151.1"
                     /translation="MTLNELLVLAGIIKAETGVEKNTHTRIGQMFLDIINYFQQNGGA
                     GGSGDVTFDPTSTAPVYEVGQSAFGGTIGYILQPGDYGYDAAFQKGIIVAEADLDDAK
                     WSADRLNDIATTGEMGDNSKFGDGLLNTDLIVNALGAGAYAAKLCYDLELNGFSDWYL
                     PVMEEIFAVRAAAPTLMNSSLGYWISSQASDSRLAYVTMAGGAEGDWKDSIHKVRPFR
                     NFSEPAPTPIRDGEIVVFSDTDGKKITGSGKTIAELGGGTGTGDMLASEYAGPGATKS
                     VRTADYAAGVKAGSALDTALAGKVDKNGTDRLMTQSEGDKLAGINEHWRGTFISLEAL
                     KAAIPVGVSGNKATIDGGIGTQPQEAIWDVSDEDWFIGSGIPITVDQSINEGSINAVS
                     GGSVFSALLGKLSATKAAIESLLTGLITSHWHSTYVDCTLVRANWIPGTLRQTINVAG
                     VLTASKIFIYPNTERNNYLEYAACQISAVEKTDGTVTFETSLIPDSDLSLTIEIR"
     gene            2312..4135
                     /locus_tag="VI413_10790"
     CDS             2312..4135
                     /locus_tag="VI413_10790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915152.1"
                     /translation="MSDIFNTINSSTPNSVARAIANEIVAGKNAIAASIVNKGQTAEV
                     TDTFESMAAKILNITGEVNVTPIQGIPSDWHDLAQVVAQNTLAEFPYSFAILLSKAMQ
                     SIQLTGSNRYITSDGGFFSGDRMHTFDVSKDTVGGDTYARFLGTLCGVATSVTVTANN
                     VGSVGNVKLTGNGTSINALIAAWNTAHPTNQLTLTSGDGTQIPTAGFKGLVAGMTTVV
                     EICENAGGDFGNITLVANGVKTIATLISEWNAANATKQLTLVSGSGTQIPTSNITLLT
                     EDIQLTGGVIGNIGKSTRWVIFLNNVDNIKPSYAFNTTTNNEGVTAQIAMNQILINGI
                     DMGNLNLNGVKISDLIIASCPNVLNLSTQGQLSGTIISKLIIPANVIALTIGYQCLMS
                     STIQSIVLPAGLKSLILPDSSFVSSSLRSLYIPDGVEAFSASYSALSVATLGYLRIGV
                     PLTSFSISNNVFTACTRLYIVELGGNWNWTISLVQGLVLPLSHESILQNFNALVDYRA
                     DGVNIPTLQTNTANNVCIGTNTQFTKTHRLGDTFYVNGVAKVISSITDDTHIVMTTNG
                     TSTASGLSYGSGKTYTVGAANLAKMSAAEKLIATNKGWTLA"
     gene            4147..4317
                     /locus_tag="VI413_10795"
     CDS             4147..4317
                     /locus_tag="VI413_10795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915153.1"
                     /translation="MITNEDGLRKQTASDGMLLVNGESFTKEVYLGNGMPELEEVPDD
                     GKLEPIPAEVIE"
     gene            4338..4835
                     /locus_tag="VI413_10800"
     CDS             4338..4835
                     /locus_tag="VI413_10800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915154.1"
                     /translation="MTNYDFFRALCISALTGVAAFFDSTFSFLFALFIGFAFNIIAGF
                     RADEVKFKLVRLIPPKFLHNFQGNKFKDSLMELFLIMTVTYVLKGIIDLNKYEAKSSY
                     VVQFLIAIACYFYLRNGLRNFHKVYPRNKFISVVYFLLAFEFRKLVGSDVADELDKIE
                     KEAQK"
     gene            4832..5287
                     /locus_tag="VI413_10805"
     CDS             4832..5287
                     /locus_tag="VI413_10805"
                     /inference="COORDINATES: protein motif:HMM:NF014600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEY6915155.1"
                     /translation="MSKIDTLHPLIREDVRSLVNKINTDVLKGNVKMVVTQGLRTFAE
                     QDALFAQKPKVTNAKGGQSIHNYGLAFDFCLVDGGRTIWDTVKDFDGDKVPDWMEVVK
                     AFKAAGFAWGGDFRSIVDKPHFEKTFGHTWQQLLAIKQSGKTENGYVVI"
     gene            5294..5881
                     /locus_tag="VI413_10810"
     CDS             5294..5881
                     /locus_tag="VI413_10810"
                     /inference="COORDINATES: protein motif:HMM:NF042453.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6549 family protein"
                     /protein_id="HEY6915156.1"
                     /translation="MVETLYRSISIGLFILLVMASVALFVTKAKNERLTADNARFTKN
                     IEVLNKNFVSYKTAYGHSAAKVEALTYTKKEASTYAKRPIEQAKELNIKPKDIVSTTE
                     IGMQTDTHVTATIQPVDSCFTYKDSFNTVYGCIHPKFVTLDIHTRDSLTTFVNRIPKH
                     HFLWWSWGTKAIELNIIAQNPKTTFNYLRYIELKK"
     gene            6187..10257
                     /locus_tag="VI413_10815"
     CDS             6187..10257
                     /locus_tag="VI413_10815"
                     /inference="COORDINATES: protein motif:HMM:TIGR01760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016032 - viral process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEY6915157.1"
                     /translation="MQNEQATSTVLLNGEQAKSELTALAQKAQNLKARLVEANEAGDG
                     KAFEKLSKELRQTQKEMKQMTKESFDLKRVLDNLSGASMRDLTRAKKELDKQLNSPAI
                     ERNSKEWKKLRDQLVDVKTEMSNLNNENKVGESGFSRMANGINKYFAMFTAGLAAVTG
                     LTLGLKKFMDARNELEDSKANLKALTGLGDSDIEWLTDQAKMLSSEMTKAGVRVRASA
                     KEIVDAFTIVGSAKPELLKDRDGLKEVTEAALVLATASKMEVVDSAKAVTIALNMYGA
                     SAKEAAKYTNVLGAGAKEGAAEVSSQTESILKSGVAAARAKIPIEQLVGSIQALADKG
                     IKDEIAGTGLKTFFIKLQSGAKETNPAIVGLQTALENLQKQHLSSAEIQKRFGLETFT
                     VAAAMIDSAKKVDFYTKAVTGTNVAWEQAAINSNTVAAKVAQAQNAFNLAGQELVKNL
                     NPALLHATDFGVAFLKMLVQTPKWLAENKGLLATLATTMVVYTVAVTGNTIAKKANDI
                     ATKALDSSTVKFFKTLLTNPYVAIGAILAGVTIAIYKFATAQTEAQKAWKQFNAESQQ
                     QSIELNNVFEAYKRANEGTSEKSRLLKIIKEQYGPYIQNLIDEKGNITDIEKAQTQAN
                     TALREQIALKIKNAAVNEITTKEVEKQSEIFGSMRDEIAKQKGDAIANVVTQEIGRIF
                     SSGKDMNKAFKEAFSFMQKYGIDAMNNKGLFSGSLTDDLRDLGTSFYRLSAGTRAIEN
                     QFVGIIKSASTAADIANGGTGTDTNNDAAGNPEDKAALQKKKVNQALQKLENDHLKKL
                     TEIKQQYVDGEITSEFDYNQAMQDQQEKYDKNQLRVLRKFLNDKSITDLSLRLELNQK
                     IGEIEKRALDRTIDQQNKLRKILLDADPIEAEKQSYENRLKELGLFGLKKELMTKEEK
                     EAFELLETQHNENLRKLSTKEAVIKLRQIEKDQQDAETVLGKEREQGLWNEQQYKDKL
                     LEIEIEFLKKKLKIQGLSANEIDKITKQLTQHSIQQMDKNAQEMSSFMERYGLDEVNR
                     FKTQKALELKLLQDYLKKGILSEKDAARVRAVLASEEFRKKTKDIVAFAEEAGKITAN
                     FSNAFQGFQQAEEEAITNKYQVEIDAASKAGKDTTKIEEQKNKELAELRAENADAMFA
                     LQVASIIASTAVSAIDAYASALKVPGIGLVLAPIAAGAAVLYGASQVAVAEAAREKAK
                     AGYFAGGYTGGSDPSEVRGYFPDGSPYHGKEYVADHVATANQPLRKVFNMIEYAKKTN
                     TVARITDEDIIRTVSGKSGYYDGGYHSTATSGANQTTTIDLSAINATMQAMNATNAAL
                     VAELQKGIKAKYKISGNDGVVQGIDQYNKLIKNAKG"
     gene            10254..>11021
                     /locus_tag="VI413_10820"
     CDS             10254..>11021
                     /locus_tag="VI413_10820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915158.1"
                     /translation="MIQFFVNNNEIVLPEDFYFSWTEENPLVTSDGEFSLDMTVSLLE
                     PKNAIAFKFLNRLNIQTIEKKADAKLIDDGRVHSGTILITRNNDIEVIFQFLAGNSEL
                     KYIARNEKKIWQFDWGTESEIDFTKAMFTLNHPGYGEVSFGGSVLGFNNYVCAPVKVG
                     DVIINDYLIDSQTENFAIISEYYNVTQQIPLPVGEFYMLTTAVEAIPAGLRKGAFALI
                     FSTDDILVEGYQYTLIDTSTALWNDVANWKAFEPKRIM"
BASE COUNT         3639 a         2066 c         2427 g         2889 t
ORIGIN      
        1 ttatcccatt tagaagatat tctgactaat cagagaaatt caactgcatt tttggcaata
       61 gatgataccg acgatggtgt gacaattaaa agaggtggtg ggtactacaa tcggagagcc
      121 atttttgtat atgtgctgaa aaaattcaat accaaaagtc aggaagatcg cgaagaaaaa
      181 gtagctgaaa cacgattaat tcataaaagc ctgttatcga aacttataat agataaaaat
      241 tcggttgatg gattgatgtt tctggacgaa aatagaatcc cttaccacga ggttccaggc
      301 atgtttgttg ccgaaacctg cggattatat ttctcattta ccattgaaga accaaccaat
      361 ctggtatatg atgcaaacga ctgggaataa gaatgactat tatcgagcct gggccaaaat
      421 gatggtgacc atttggctcg ataagattgc agcgcttaat atacgcgata caggtgaatt
      481 attcaagtca tttgatactg aattgactat gcaagccaat ggtgacgtgg ataagattgt
      541 attctcatac ttatattacg ggcgaatggt agatatggga gtaaggcgag gcattaaaat
      601 ggatgaagcc ggtaaaaaag gaaagccctg gtacaataag gcatggtacc attccataaa
      661 agtaatgacc gaaaaacgct ctgagctcta cggagaagaa tttcaagcaa taatttttga
      721 gacactcaat ttctgagtgt cttttttttt gccttcctac cttagtttat ttgtatcaaa
      781 aatacaaaag ctatgacttt gaatgaactt ttggtgcttg ccggcataat aaaagccgaa
      841 acgggtgtag aaaagaacac tcacacccgc atcggccaga tgtttctcga cataataaac
      901 tacttccagc aaaatggtgg cgcaggtggt tccggagatg tcacctttga ccccacatct
      961 accgcacccg tttacgaagt tggccaatct gcatttggtg gaacgatagg ttacatactg
     1021 cagccgggag attacggtta tgacgctgca tttcaaaaag gaataattgt ggccgaggcc
     1081 gacctggatg acgctaaatg gagcgctgac cgccttaatg atatagccac taccggcgaa
     1141 atgggtgata actctaaatt tggagatggg ctattaaata ctgacctcat tgtgaacgca
     1201 cttggtgccg gtgcttatgc agctaagctg tgttacgatc tggaattgaa cggtttttcc
     1261 gattggtatc ttccggttat ggaagagata tttgccgtaa gagctgcagc gcctacgctg
     1321 atgaatagtt cgctgggtta ctggatatca agccaggcat ccgatagccg actggcttac
     1381 gttactatgg ccggtggtgc tgagggagac tggaaagatt ctatacataa agtgcgtcca
     1441 ttccgcaatt tctcagaacc cgctccaacg ccgatccgcg atggtgaaat agtagtcttc
     1501 tcagataccg acggaaaaaa aattaccgga agcgggaaaa caattgctga acttggtggt
     1561 ggaacaggta ccggtgacat gcttgcctca gaatatgccg gaccaggagc aacaaaatcg
     1621 gttagaactg cagattatgc agcgggagta aaagccggaa gtgcgctgga tactgcgctt
     1681 gccggaaaag tagacaagaa tggtactgac cgcctaatga ctcaatccga aggtgataag
     1741 cttgccggta ttaatgagca ctggcgtgga actttcataa gccttgaagc actaaaagca
     1801 gctattcctg taggtgtatc cggaaataaa gcaactattg atggtggtat aggaacgcaa
     1861 cctcaggaag ctatatggga tgtatctgat gaagattggt tcattggttc gggtattccg
     1921 attactgtag accagtctat caacgaaggc agcattaatg ctgtttctgg aggttctgtt
     1981 ttttcggctt tactcggtaa actttcagca acaaaagcag ctattgaatc actgcttaca
     2041 ggattaatta cttcacattg gcattcaacc tatgtcgatt gcacattagt acgtgccaac
     2101 tggattcctg gaacgctacg gcagacaatc aatgtagccg gagtacttac tgcctcaaaa
     2161 atatttattt atccaaatac agaaagaaat aactacctgg aatacgcagc ttgtcaaatt
     2221 tctgcagtcg aaaaaacgga cggaactgtg acctttgaaa ctagtttaat ccccgattca
     2281 gatttatcac taaccataga aatcagataa tatgtcagat atttttaata ccataaacag
     2341 ctcaacgcct aacagtgtgg cacgcgcaat agccaacgaa attgtagctg gtaaaaatgc
     2401 gatagcagct tcaatcgtaa ataaaggcca aacagccgaa gtgacggata catttgaaag
     2461 tatggctgca aagattctga atatcaccgg tgaagtaaac gtaactccaa ttcaaggaat
     2521 tccgagcgat tggcacgatt tagcacaagt agtggcgcaa aacacattgg ctgagtttcc
     2581 atattcgttt gccattttgc tttcaaaggc gatgcaatca attcagttga caggttctaa
     2641 ccgctatatt acttcagacg gtggattctt ttcaggtgac cgaatgcaca cctttgatgt
     2701 aagtaaagac actgtaggtg gtgatactta tgcccgattc ttaggtacac tttgcggagt
     2761 tgccacatcg gtaactgtaa ccgcgaataa cgttggttcg gttggcaatg tgaagctaac
     2821 cggcaacggt acttctatta atgcactcat tgctgcatgg aatacagctc acccgactaa
     2881 tcagctcacg ctaaccagtg gagacggaac tcagattcca acggctggat ttaaagggtt
     2941 ggtggcagga atgacaacgg tggtggaaat ctgcgaaaat gcaggtggtg actttggaaa
     3001 tattaccctt gtggccaatg gggtaaaaac aattgcaaca ctcatttcag aatggaatgc
     3061 agccaatgcg acgaaacaac taacgttagt ttcgggaagt ggaacgcaaa ttccgacgtc
     3121 aaatattaca ttattgacgg aagatattca attgacaggt ggtgtaattg gaaatatagg
     3181 taaatcgaca aggtgggtta ttttcttgaa taatgtggat aatattaagc ctagttatgc
     3241 atttaatact accactaata acgaaggtgt tacggcacaa atagccatga atcaaatatt
     3301 gattaacggc attgatatgg gtaatttgaa tctaaatggg gtaaaaattt cagacctgat
     3361 aattgccagt tgccctaacg tactcaattt atctacgcaa ggtcagctaa gcgggacaat
     3421 aatatcaaaa ctgataatac ctgctaacgt aattgcatta acaatcgggt accaatgctt
     3481 aatgtcaagc actatccaaa gcatagtgct acccgcaggg ttaaaaagct taatccttcc
     3541 ggattcgtca tttgtcagta gcagtttaag gagcttgtac atacccgatg gcgtggaggc
     3601 gtttagcgca tcttattcag cactctcggt ggccacactt gggtacctta ggataggagt
     3661 tcctctaaca tcttttagta tctcgaataa cgtgttcacg gcatgcacaa ggttgtacat
     3721 tgttgaactt ggcggaaatt ggaattggac aatcagttta gttcaggggc ttgtacttcc
     3781 actatcccat gaatccatac tacaaaattt caacgccttg gttgattatc gggccgatgg
     3841 agttaacata ccgactttac agacaaacac agcaaataac gtttgcattg gaaccaatac
     3901 gcaatttaca aaaacgcaca gattagggga cacgttctac gtaaatgggg tggcaaaagt
     3961 aattagctct ataacggacg acactcacat cgttatgaca acaaacggaa catctacagc
     4021 atccggtcta agctacggca gcggtaaaac gtatacggta ggagccgcaa atctggctaa
     4081 aatgagcgca gcagaaaaac tgattgcaac aaacaaagga tggacacttg cttaaaataa
     4141 attaatatga taacaaatga agatggatta agaaaacaaa ctgcctcaga tggcatgttg
     4201 cttgtaaatg gtgaatcatt tactaaagag gtttatctgg gcaatggcat gccggaactg
     4261 gaagaagtac cggacgatgg caaactggag ccgattccgg ctgaagtgat agaatagaaa
     4321 ttttaaaata caacaatatg accaattacg atttcttccg agctctttgc atctccgcat
     4381 taaccggagt tgcagcattt ttcgacagta catttagttt tttgtttgcg ctgtttatcg
     4441 gatttgcatt caatatcatt gcgggctttc gtgccgacga agtaaaattt aaacttgtca
     4501 ggttgattcc acctaagttt ttgcacaatt ttcaagggaa taaatttaag gatagcctta
     4561 tggagctatt ccttataatg actgtaacgt atgtactaaa agggattatt gacctgaata
     4621 aatatgaagc aaaaagctct tatgtagttc aattcctcat tgctattgct tgttatttct
     4681 atttacgaaa tggcctgcgt aattttcata aggtataccc acgaaataaa tttatatctg
     4741 tggtatattt tctacttgca tttgaattcc gtaaactggt tggttctgac gtggctgacg
     4801 aacttgataa aattgaaaag gaggcacaaa aatgagcaaa atagatacac ttcacccgct
     4861 gatccgcgaa gatgttaggt cgctggtaaa taagatcaac accgatgttt tgaaaggtaa
     4921 tgtaaaaatg gtggttactc aaggcttgag aacctttgct gagcaggatg cacttttcgc
     4981 acaaaagccg aaagtgacaa acgcaaaagg tggtcaatca atccataatt acggccttgc
     5041 ctttgacttt tgcctcgttg atggtggtcg caccatttgg gatacggtaa aagatttcga
     5101 cggtgacaaa gttccggact ggatggaagt agtgaaagct ttcaaagctg ccggcttcgc
     5161 ttggggtggt gatttccgga gtattgtgga taaacctcat ttcgaaaaaa catttggaca
     5221 tacctggcag caattattgg caattaaaca atctggcaaa accgaaaacg gttatgtcgt
     5281 aatataaaat aatatggtag aaacgcttta cagatcaatt tcgattggac tatttatttt
     5341 gttggttatg gcttccgtag cgttgtttgt aaccaaagcg aaaaacgaac ggctaacggc
     5401 tgataatgcg agattcacga agaatatcga agtattgaac aaaaattttg tgagttataa
     5461 aacggcttac ggtcactcgg ctgcaaaagt tgaagcattg acgtatacaa aaaaagaggc
     5521 ttcaacctac gccaaacgcc ccattgaaca ggcgaaagaa ttgaacataa agccgaaaga
     5581 tattgtatct acaaccgaaa ttggtatgca aacagatacg cacgtaacgg ctactattca
     5641 accggttgat tcttgcttca cttataagga ttcattcaat acggtttacg gttgtattca
     5701 ccccaaattt gtgacactcg atattcatac acgagatagt ttgacaactt ttgtcaatcg
     5761 gattccaaag caccattttt tatggtggag ctggggcaca aaagcaatag aattaaacat
     5821 tattgctcaa aatcccaaaa caacatttaa ttatttgagg tatatagagt tgaaaaaata
     5881 gtttgttact tttttgtttt ccatagaatt agatttaaag ttaagttgat aaaccgttcc
     5941 cgttgtgata acgtggacgg ttttttttat atttgcagca tgtatgagcc cgaaaatata
     6001 aaaagcagaa taaagcgtga cctggtatta ctcctgattg taataccaat tatagctatt
     6061 ttgtatattt caacccactt ttccgaaatt atatcctacc tgcgaaacct gctaaactag
     6121 caggtttttt tgtctttttt ccctcccttt tacttgattt catttgcata actaatttga
     6181 aaagttatgc aaaacgaaca agctaccagt accgtattgc tcaatggaga gcaggcaaaa
     6241 agcgaattaa ccgcactggc acaaaaagcc caaaatttaa aagcccgatt ggtcgaagcc
     6301 aatgaagccg gtgacggaaa ggcttttgag aaactatcca aagaactccg gcagactcaa
     6361 aaagaaatga agcaaatgac taaggagtca tttgacttga aacgtgtact cgataatctg
     6421 tcaggtgctt ccatgagaga tttgacacgt gcaaaaaaag agcttgacaa acaacttaat
     6481 agccctgcaa tagaacggaa ctcgaaagag tggaaaaagc tgagggatca attggttgat
     6541 gtgaagactg aaatgtcaaa cctcaataac gaaaataaag ttggtgagag cggtttttcc
     6601 cggatggcaa atggcataaa taagtacttt gccatgttta ctgcagggtt ggcagctgtc
     6661 accgggttga cacttggact gaaaaagttc atggacgcca ggaacgaact ggaagattca
     6721 aaagcaaacc tgaaggcatt gaccgggcta ggtgatagtg atattgagtg gttgacagac
     6781 caggctaaga tgctatcttc agaaatgaca aaagcgggtg ttcgcgtgag agcttccgcc
     6841 aaagagattg tcgacgcttt tactattgtc ggctctgcaa agcccgaatt acttaaagat
     6901 agagatgggc tcaaagaagt aaccgaggct gctttagtgc ttgcaacagc gtcgaaaatg
     6961 gaagtagttg attcggctaa ggctgtaact attgcgctga acatgtacgg agcttcggcc
     7021 aaagaggctg caaaatatac caatgtgctc ggtgccggag caaaagaggg tgccgccgaa
     7081 gtttccagcc aaacagaatc aattctaaaa tctggtgtgg cagctgcccg ggcaaaaata
     7141 ccaattgagc aattggtagg atcaatccag gcactggcag acaaaggtat caaggatgaa
     7201 atagccggta caggattgaa aacatttttc attaagctgc aatccggagc aaaagaaact
     7261 aatccggcta ttgtaggact tcaaacagcc cttgaaaacc ttcagaaaca acatctctct
     7321 tctgcagaaa ttcaaaaacg ctttggactt gaaactttca cggtagcagc tgctatgatt
     7381 gacagcgcca aaaaagtaga cttttacacc aaagccgtaa cagggacaaa tgtagcctgg
     7441 gaacaagctg caattaatag taataccgtt gctgctaaag ttgcccaggc gcaaaatgcg
     7501 ttcaatcttg ccgggcaaga attggtaaag aacttgaatc cggcattgct tcacgctacc
     7561 gatttcggtg ttgccttcct gaaaatgctt gtgcaaactc caaaatggtt ggccgaaaat
     7621 aaaggtttat tggccacact tgccactaca atggttgttt atacggttgc tgttaccgga
     7681 aatactattg ctaaaaaagc caatgacatt gcaacaaaag ccctggatag ttcaactgtt
     7741 aagtttttca aaacattgct cacgaatcct tatgttgcca tcggggcaat tcttgccgga
     7801 gtaactattg ctatatacaa atttgcaaca gctcagactg aagcacaaaa agcatggaag
     7861 caattcaatg ctgaatcaca acagcaaagc atcgaattaa ataatgtttt tgaagcctat
     7921 aaacgtgcta acgaaggaac ttcagaaaaa agccggttat tgaaaataat taaagaacaa
     7981 tatggcccat atatacagaa tttaattgat gaaaaaggaa atataactga tattgaaaaa
     8041 gcgcaaacac aagccaatac agcattgaga gagcaaattg cacttaaaat aaaaaatgca
     8101 gctgtaaatg aaattacaac caaagaagtt gaaaaacaat cagaaatctt tggctccatg
     8161 cgggatgaaa ttgctaaaca aaaaggcgat gccattgcta atgttgtgac tcaagaaata
     8221 ggcaggatat tttcttcagg aaaagacatg aataaagctt tcaaagaagc tttttcattc
     8281 atgcaaaaat atggcattga tgccatgaat aataaaggct tgttctcagg atcattaacc
     8341 gatgatttgc gtgacttagg gaccagcttc tacagattga gcgcaggaac ccgggcaatt
     8401 gaaaaccaat tcgtaggtat tataaaaagt gcgagtactg ccgccgatat cgctaatggt
     8461 ggaaccggta ctgatacgaa taatgacgct gccggtaatc ctgaagataa agcagctctc
     8521 caaaaaaaga aagtcaacca ggcattgcaa aaactggaaa atgatcacct taaaaagttg
     8581 actgaaataa agcaacaata tgttgatggt gaaattacaa gtgagttcga ttataatcag
     8641 gcaatgcagg atcaacaaga gaaatacgat aaaaaccaac ttcgtgttct tcgtaaattt
     8701 ctaaatgata aatcaattac agatctttct ttacgcctgg aattgaatca aaaaattgga
     8761 gagattgaaa aacgtgcgtt ggaccgtaca attgaccaac aaaataagct tcgaaagata
     8821 cttcttgatg cggatccgat tgaagccgaa aaacaatcgt atgaaaatag actcaaggaa
     8881 cttgggttat ttggtctcaa aaaagagctt atgaccaaag aggagaaaga agcttttgaa
     8941 ttgcttgaga cgcaacacaa tgaaaatttg cgtaagctgt caaccaaaga ggcagtaatt
     9001 aagctccgcc aaatagagaa agatcaacaa gatgctgaaa cggtccttgg aaaagagcgt
     9061 gagcaaggtc tatggaacga acagcaatat aaagacaagt tacttgaaat tgaaatcgag
     9121 tttttaaaaa agaaacttaa aatacaaggt ttatctgcaa atgaaataga taagatcaca
     9181 aagcaattga ctcagcactc tatccaacaa atggataaga atgctcagga aatgtctagt
     9241 ttcatggaaa gatacggact tgatgaagta aaccggttta aaactcaaaa agccctggag
     9301 ttgaagttac ttcaggacta tttgaagaaa gggatccttt ccgagaaaga tgctgcccgc
     9361 gttcgtgcag tcctggcttc tgaagagttc cggaagaaaa caaaggacat tgttgcgttt
     9421 gcagaggaag ctggaaaaat tacagcaaat ttctccaatg cgttccaggg atttcaacaa
     9481 gccgaggaag aagcaatcac caataagtat caggttgaaa tagatgcagc ttcaaaagca
     9541 ggcaaggaca caaccaaaat tgaagagcag aaaaacaagg aactggcaga gctccgggcg
     9601 gagaatgccg atgctatgtt tgcccttcag gttgcttcca ttattgcttc gacagcggtt
     9661 tcagctatcg atgcttacgc cagtgctttg aaagtaccag gcatcgggtt agtacttgcc
     9721 ccgattgccg ccggagctgc tgtcctatat ggagcttctc aggtagccgt tgctgaagct
     9781 gcacgggaaa aagcgaaagc cggttatttt gccggaggtt ataccggtgg cagtgatcca
     9841 agcgaagtgc gtggatattt cccggacgga agcccctacc acggcaagga atatgtggcc
     9901 gaccacgtgg caacggcaaa tcaaccgctt cggaaagtat tcaatatgat tgaatatgca
     9961 aagaaaacaa acacagtagc acggatcacg gacgaagata ttattaggac cgtaagtggg
    10021 aaaagtggat attatgatgg cggatatcat tctacagcta ccagcggtgc aaatcaaact
    10081 acaacgatag acctatcggc cattaatgcc acaatgcagg caatgaatgc tactaatgcg
    10141 gcgttggtgg ctgagttgca aaaagggata aaagccaagt ataagatttc cgggaatgat
    10201 ggagtagttc agggaattga tcaatacaac aaactaatta aaaacgcaaa aggatgatcc
    10261 agttttttgt aaacaacaac gaaatagttc tccctgaaga tttttatttt tcgtggactg
    10321 aagaaaatcc attggtaact agcgatgggg aattctcact cgacatgacg gtgtctctat
    10381 tagaacctaa aaatgcaatt gcctttaaat ttctcaatag attgaatatt caaactattg
    10441 agaaaaaagc ggatgcaaaa ctgattgatg acggtagagt acactccgga actattttaa
    10501 tcacaaggaa taatgacata gaagttatct ttcagtttct tgcaggaaat tccgaactca
    10561 aatatattgc caggaatgaa aaaaaaatat ggcaatttga ctggggtact gaatctgaaa
    10621 ttgactttac aaaggcaatg tttacactta atcatcccgg ttatggtgag gtttcctttg
    10681 gtggatcagt attaggattc aataactatg tttgcgcacc agtaaaagtc ggtgacgtga
    10741 taataaatga ttatcttatt gattctcaaa cagaaaattt tgcaatcatt tcagagtatt
    10801 ataatgtaac ccaacaaata ccattgccag tgggtgaatt ttatatgttg acaactgcag
    10861 ttgaagcaat acctgcaggt ttacgtaaag gagcatttgc acttatattt tcaaccgatg
    10921 acattttggt agaaggctac caatacacac taattgatac gtcaactgct ttatggaatg
    10981 atgttgcaaa ctggaaagcg tttgaaccaa agcgaattat g
//
LOCUS       DATDNM010000635         2704 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1144658, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000635 DATDNM010000000
VERSION     DATDNM010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1144658"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..403
                     /locus_tag="VI413_10825"
     CDS             <1..403
                     /locus_tag="VI413_10825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915159.1"
                     /translation="SSAHLSAILLGGSQTDHFRFLSRDYNMGSGFSSKLNFEFRFDSK
                     VRFLLNLEDYRIYSWTGINPADNSIVSNVQGDVCNSSLDVFRAYFCYNLAKHLLLTAE
                     TSYYYRRNIYKYFPNVIHGVFGNTLSIGYTF"
     gene            662..2251
                     /locus_tag="VI413_10830"
     CDS             662..2251
                     /locus_tag="VI413_10830"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY6915160.1"
                     /translation="MVEFLINYWWIVLIIVCIVLYKYILRFLFGMIIVPEDRVGLVTK
                     KFVLFGADKSLPDGRIIATKGEAGFQAKALAPGLYFGKWFWQYDVTMEQFMVIPEGKI
                     GLVMSKDGAPIPTGNILAQSVDCDNFQDAEKFLLNGGQRGRQTAYITTGSYRINTMLF
                     QVSITDMVRIQESKVGIITTLDGMPIEPGQIAGKLVEGHNNFQDFDIFLKNGGNRGLQ
                     PQVILAGSYNLNPWAVQVEEIPMTEISIGFVGVVISFIGTEGRDLTGSDFKHGNIVNK
                     GEKGVWIEPLGPGKYPINTYIMKVELVPTTNLVLNWASARSEAHNLDKNLSTITVRSK
                     DGFPFNLDVAQIIHVPTTEAPKVIARFGNMVNLVSQVLEPTIGNYFRNSAQDSDVIAF
                     LSTRKERQESAKEHIKKVLDEYNVNAVDTLIGDIVPPDSLMKTLTDRKIAEEQKITYE
                     TEKKAQETRQGMEKETAIADMQKEIVKAQQGVEIAERIANATVKKSEGDATSVKLAVS
                     AEATATKMRAEAEAEAIKVKA"
     gene            2309..2575
                     /locus_tag="VI413_10835"
     CDS             2309..2575
                     /locus_tag="VI413_10835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915161.1"
                     /translation="MGKSTAEAYELAVKALGGENFTRYKITEELSRGNVKLIPDILIG
                     GNNGNGGTAIDGLLGLKLMEMMDPEKKKELKEKVSETRPPIKDK"
BASE COUNT          863 a          513 c          576 g          752 t
ORIGIN      
        1 tagttcagct catctgagcg ctatcctgct gggtggaagt cagaccgatc attttcgttt
       61 tctaagccgg gattataata tgggaagtgg cttcagctca aaattgaatt ttgaattcag
      121 atttgactcc aaagtcagat ttttactgaa tctggaagac taccggattt attcgtggac
      181 gggaatcaac cctgcagata atagtatcgt ttcaaatgtt cagggcgatg tttgcaattc
      241 gagccttgat gttttcaggg catatttctg ttacaacctt gcaaaacatc ttttacttac
      301 cgctgaaacc agctattatt atagaagaaa tatctacaaa tatttcccca atgtgattca
      361 tggcgtattt ggaaacacac tgagcattgg ttatacgttc tgacaagatg ccaataattg
      421 gctaaaggta gttgaagtcg tgtgatttca actgcctttt atttttaatt atcagcacgt
      481 tgaaaacaca aatcaattta ttttaaaatt gttgataaat atttcgattt atttcagtta
      541 aacccaaaga ataattttac ttttgggtct gtcaaaacag acagtagaat aatcttatat
      601 attactaata tactggtatt taaaaataaa ataatgttta acttttctaa ttaaaaaaat
      661 tatggttgaa tttctgatta attattggtg gattgtactg ataattgtat gtattgtact
      721 ttacaagtac attttacgct tcctttttgg gatgatcatc gtacccgaag atcgtgttgg
      781 actcgttacc aaaaagtttg tattattcgg agcggacaaa tcgttacccg atgggcgcat
      841 tattgccacc aaaggagaag ccggtttcca ggccaaggca ttagctccgg gactttattt
      901 cggaaaatgg ttttggcaat atgacgtgac catggaacaa tttatggtta ttcccgaagg
      961 aaaaatcgga ttggttatgt ctaaagatgg tgcgcccatt cctaccggta atatccttgc
     1021 acaaagtgtt gactgtgaca attttcagga tgccgaaaag tttctgctga acggagggca
     1081 acgtggtcgc caaacagctt atatcaccac cggttcatac cgtatcaaca ccatgctttt
     1141 tcaggtttca ataactgata tggttcgcat tcaggaaagc aaagtgggta ttattaccac
     1201 gcttgacggt atgccgattg aaccggggca aattgccggt aaattggttg aagggcataa
     1261 taactttcag gattttgaca tatttcttaa aaatggtggt aaccgcggct tacaacctca
     1321 ggtaattctg gccggttcgt ataacctcaa tccatgggca gtgcaggtag aagaaatacc
     1381 tatgactgag atttcaattg gatttgttgg cgtggttatt tctttcatcg gtactgaagg
     1441 ccgtgatttg actggctccg attttaaaca cggcaatatc gtaaacaaag gcgaaaaagg
     1501 tgtttggatt gaaccactcg gacccggaaa atatccaatc aatacgtata taatgaaagt
     1561 ggaactggta ccaacaacca accttgttct caactgggca tcggctcgca gcgaagcaca
     1621 taacctcgat aaaaacctat cgaccataac ggttcgttcg aaagacggtt tcccattcaa
     1681 cctggatgtt gcacaaatta tccacgttcc gactacggaa gcgccaaagg ttattgcccg
     1741 tttcgggaat atggtaaacc ttgtttcgca ggtattggaa ccaactattg gcaactactt
     1801 ccgtaattcg gctcaggaca gcgatgtaat tgctttcctc agcacccgta aagaacgtca
     1861 ggaatcggcc aaagagcata tcaaaaaagt actcgatgaa tacaacgtta atgcggttga
     1921 tacgctgatt ggtgatattg ttccaccgga ttcgctgatg aaaacgctga ccgaccgtaa
     1981 aattgccgaa gagcaaaaga taacttacga aacagagaaa aaagcgcagg aaacccgtca
     2041 gggaatggaa aaagaaactg ccattgccga tatgcagaaa gaaattgtaa aagcacaaca
     2101 gggtgttgaa attgccgaac gtattgccaa tgcaaccgta aaaaaatcag aaggtgacgc
     2161 taccagcgta aaattagctg ttagcgcaga agccacagcc accaaaatgc gtgcagaggc
     2221 tgaagctgaa gctataaagg taaaagcata ggctcaggca gaacaaattt cgcttacggg
     2281 cgctgctgaa gccggaaaaa ttctggctgt gggtaaatca actgctgaag catacgagct
     2341 tgctgtaaaa gcactgggag gtgaaaactt tacccgatat aaaattactg aagaactgtc
     2401 gagaggcaat gtaaaactga ttccggatat tttgattggc ggaaacaatg gaaatggcgg
     2461 tactgccatc gacggactct taggcctgaa actaatggaa atgatggatc ctgaaaaaaa
     2521 gaaagaactg aaagaaaaag tttcagaaac cagaccaccg attaaagata aataattaaa
     2581 atctccagat tctgataata aatgaaattc acggctgaac ctcccaacag aagttcagcc
     2641 gtttttcttt aaatagattt attcacatca ttccttttct gcaataatca aagtagatgg
     2701 aatc
//
LOCUS       DATDNM010000636         2057 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_504948, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000636 DATDNM010000000
VERSION     DATDNM010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504948"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VI413_10840"
     CDS             complement(<1..276)
                     /locus_tag="VI413_10840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEY6915162.1"
                     /translation="MMLSKSKIKLINSLSQKKFRDETGLFVAEGTKLVLDLASSFHCS
                     MLVATADWLKSNPTIKTDELIESTENELNKISNQKSPQGVLAVFVKPD"
     gene            476..>2057
                     /locus_tag="VI413_10845"
     CDS             476..>2057
                     /locus_tag="VI413_10845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915163.1"
                     /translation="MKLRVWSSFVVFVLLLSACNMTKYVPDGEFLLDKFDIKTDTKDL
                     DKAELEEYLRQTPNAAVFGTFKMQLGIYNLAPTDTTKKFSRFWHRTFMKIGDPPVIYN
                     PTLTSISVQQLQRLAENKGYINAKVESNVVTKGKKAEVKYIVTSNKPYRLREYGVDLK
                     NEQLAEIAADTSKSLIRQNMLFDTDVFNAERERITSQFRKLGFYNFNKDYLTYSADSA
                     LNSHKIDVTLGLRDYLKHSNDSVNKIIFKQFSIRKVIYYINTDASLSTDLANKDKLDT
                     VQFRDFILVTPKNRILTLDALVQNTFINPNTLFSDDAVGRTYQSLNSLGPIKYVNISF
                     KESESNLLDCYIIIVPSKTVSLSTELEATYTDGFWGGAASVNTVNRNVFKGAETLSIL
                     LRGAFEKQDSTIWAQEFGIQAGLKFPRVLLPFGSYDFKRNIHANTEFTGALSYLNRPG
                     EFTTTNAGAGINYSWNRQQYHNVFQPFDLSYVRFLDVNEVFRSTYLNDTAPRYNPYNY
                     KDHLIMRMGYTGSYSTFNA"
BASE COUNT          633 a          420 c          384 g          620 t
ORIGIN      
        1 atcgggttta acgaaaacag ctaaaactcc ctgagggctt ttctgattgg aaattttatt
       61 caactcattt tcggtcgact caatcagctc atcagttttt attgttggat tgctttttag
      121 ccagtcagca gtcgcaacca gcatggaaca atggaatgat gaggctaaat cgagaaccag
      181 tttggttcct tcagcaacaa atagtccggt ttcgtcacga aatttctttt gcgagaggct
      241 attgataagt tttatcttgc ttttggataa catcatttgg tcagtttata caaacctcaa
      301 agtttgtatt tttacttttg agcttttttt ttgaattaat ttttaaacgc ttttgtccct
      361 ttccaaagac aaaaagtttg aaaatcgatt tgaaatttgt tgatacaaag ctaacaaaga
      421 aaacgataaa aagctatatt tgcaaaatat tttaattcat tttattaacc ttggtatgaa
      481 gttgagagtt tggagttctt tcgttgtatt tgtgttgttg ctttccgctt gcaatatgac
      541 caaatacgta cctgatggcg aattcctgct tgataagttt gatattaaaa cagataccaa
      601 ggacctggat aaggctgaat tggaagaata tctgcggcaa acacctaatg cggctgtttt
      661 cgggactttc aaaatgcaat tgggcattta taatctggcg ccaaccgaca ctaccaagaa
      721 atttagcagg ttctggcaca gaacttttat gaaaatcggt gatccaccgg ttatttacaa
      781 ccctaccctt acgtctattt ccgttcagca acttcaacga cttgctgaaa ataaaggcta
      841 tatcaacgct aaagtggaaa gcaatgtggt gacaaaaggc aaaaaagccg aagtgaaata
      901 tattgtaact tccaataaac cataccgcct gcgtgaatat ggcgtcgacc tgaaaaatga
      961 acaactggcg gaaattgcgg cagacacttc taaatccctg attcgccaga acatgctgtt
     1021 cgacactgat gttttcaacg cggaacgcga acgcatcact tcccaattcc gcaaactggg
     1081 cttttataat ttcaacaaag actacctgac ttattcggcc gacagtgctt taaactcgca
     1141 caaaattgat gtaacacttg gactacgcga ctacctgaaa cactccaacg attcagtcaa
     1201 taaaatcatt ttcaagcaat tttccattcg caaagttata tattacatca acactgatgc
     1261 gtcattatca actgatttag ccaataaaga caagttagat acagttcagt tccgtgattt
     1321 tattctggtc acacccaaaa atcgtattct aacattggat gcattggttc agaatacgtt
     1381 tatcaatccg aacactttgt tcagcgacga tgccgttggg cggacctatc agtcgttaaa
     1441 ctcactcggt cctattaaat acgtaaatat cagcttcaaa gaatctgaaa gcaatctatt
     1501 ggattgttac atcatcatag ttccatcaaa aacagtttca ctttctacag aattggaagc
     1561 aacatacact gatggtttct ggggaggtgc agcaagcgta aacactgtaa accgaaatgt
     1621 atttaaaggg gctgaaacac tgtctatcct gttacgtggg gcttttgaaa aacaagacag
     1681 tacgatttgg gcccaggaat ttggcataca agccggcctg aaatttcctc gggttttact
     1741 tccatttggc agctatgatt tcaaacggaa tattcatgcc aataccgaat tcacaggtgc
     1801 attgagttat ctgaatcgtc cgggtgagtt taccaccacc aatgcgggtg ccggaatcaa
     1861 ttattcatgg aaccgccagc aatatcacaa tgtgttccaa ccgtttgact taagctatgt
     1921 tcgattcctg gatgttaatg aagtgtttcg tagtacctat ctaaatgaca ccgccccaag
     1981 atacaatcca tacaattata aagatcacct tattatgcgt atgggttata caggttcata
     2041 ttcaactttc aacgcaa
//
LOCUS       DATDNM010000637         2734 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1679891, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000637 DATDNM010000000
VERSION     DATDNM010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2734
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1679891"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..963
                     /gene="cysK"
                     /locus_tag="VI413_10850"
     CDS             16..963
                     /gene="cysK"
                     /locus_tag="VI413_10850"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009001235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HEY6915164.1"
                     /translation="MAKIAKNLTELIGNTPLVQLSNYSINKGLEATVIVKLESFNPAG
                     CVKERIALSMIEDAEAAGILKAGAEIIEPTSGNTGIGLALVAAVKGYKLTLTMPETMS
                     VERRNLLKALGANLVLTPGATGMKGAIARALELHEENPNSYIPQQFENASNPQVHKRT
                     TGVEIWNDTDGKVDIFVAGVGTGGTVSGVGAYLKEKNPNIKIIAVEPADSPVLSGGAP
                     GPHKIQGIGAGFIPKNYDASVVDEIIAVSNDNAILTSRQLAQQEGLLVGISSGAAAYA
                     ATLLAQRPENKGKNIVALLPDTGERYLSTLLYAFEEYPL"
     gene            1132..2430
                     /locus_tag="VI413_10855"
     CDS             1132..2430
                     /locus_tag="VI413_10855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEY6915165.1"
                     /translation="MSEYKFETLQVHAGQVVDGTTKARAVPIYQTSSYVFDDAADGAD
                     LFALRKFGNIYTRLMNPTTDVFEKRIAALEGGVSALATSSGQSAQFIALNNILAAGDN
                     FVSTSHLYGGTYNQFKNQFKRLGVDVKFTADDKPETFEALIDESTKALYLETIGNPDL
                     NIPDFEAIAAVADKHGIPLIVDNTFGAGGAIFRPLEHGASVVVESATKWIGGHGTSLG
                     GVIVDSGKFNWGNGKFPAFTEPSDSYHGLVFWEVFGFDGPFGNIAFNIRARVEGLRDW
                     GNAISPFNSFLLLQGLETLSLRVDRHVQNALELATWLENHPAVEYVNYPGLKSSPYHA
                     LANKYLKRGFGGVLSFKLKGNAEKADKLIDSLKLISHLANVGDAKSLIIHPAATTHEQ
                     LSPEDKISAGVFPGALRISVGIENILDIKADLEQAFELIK"
     gene            complement(2486..>2734)
                     /locus_tag="VI413_10860"
     CDS             complement(2486..>2734)
                     /locus_tag="VI413_10860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004316009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyltransferase beta-barrel
                     domain-containing protein"
                     /protein_id="HEY6915166.1"
                     /translation="GNDFTMRDFHFITENPWENASSEIDITFKIRHTPEFTPGKILKT
                     PNGFHLVSDQKLQGIAPGQFGVIYDAESKICIGSGEII"
BASE COUNT          801 a          557 c          597 g          779 t
ORIGIN      
        1 ataaagaata tcgttatggc aaaaattgca aaaaatctca ccgaattaat tggaaacact
       61 ccactcgtac aactctcgaa ttacagtata aataagggtc ttgaagctac tgtaattgta
      121 aaacttgaat cgttcaatcc agcaggttgc gtaaaagaac gtatcgccct gtcaatgatt
      181 gaagatgctg aagcagccgg aattttgaaa gccggagctg aaattattga accgacaagt
      241 ggcaacaccg gtatcggact ggctttagtc gcagcggtaa aaggatacaa acttacgctt
      301 actatgcctg aaaccatgag cgtggaacgc agaaacttat tgaaagcatt gggtgcaaac
      361 ctggtgttga ctcccggagc tacaggaatg aagggtgcca ttgccagggc attggaactt
      421 cacgaagaaa atccgaattc atatatccct caacaatttg aaaacgcttc aaacccacaa
      481 gtgcataaac gtactacagg tgttgaaatc tggaacgaca cagatggcaa agtagatatt
      541 tttgttgcag gtgttggaac cggtggaaca gtaagcggtg ttggtgctta tttgaaagaa
      601 aaaaatccaa acataaaaat tattgccgta gagcctgccg attctcctgt actttcaggc
      661 ggtgcaccgg gtcctcacaa aattcaggga atcggagccg gatttattcc gaaaaactat
      721 gacgccagcg tggttgatga aattattgcg gtaagcaatg ataacgctat tctgacttca
      781 cgccagttgg ctcagcaaga aggtttattg gttggaattt cgtcgggtgc tgctgcttat
      841 gctgccactt tgcttgctca acgtcctgaa aacaaaggca aaaacattgt tgcacttctt
      901 cctgataccg gcgaacgcta tttgtcaaca ttgctttatg catttgaaga atatccgttg
      961 taattaaaag ccgtaagagg caagaggtaa gaatgcaagt aatttgtttt tctacctctt
     1021 ttcctcaata aaaaaaataa aactaagtat ttactcggtt tgaaattaag ataggtcttc
     1081 ggtttcccga tgcttagctc ttgttttctt accttttacc cctaaaataa tatgtcagaa
     1141 tataaatttg aaacgctgca ggtacatgca ggacaagtag ttgacggaac aaccaaagca
     1201 cgtgcagttc ccatttatca aacaagctct tatgttttcg acgatgcagc cgatggcgct
     1261 gatctcttcg cacttcgtaa attcggtaat atctacaccc gtttgatgaa cccgaccacc
     1321 gatgtgttcg aaaaacgtat tgctgccctc gaaggtggtg tgtctgcgtt ggcaacttca
     1381 tcgggccaat cggctcagtt tattgccctg aataatattc tggctgcggg agataatttc
     1441 gtatctactt cgcatttgta cggaggtacc tacaatcagt tcaaaaatca attcaaacgt
     1501 ttgggcgttg acgtgaaatt cactgccgat gacaaaccgg aaaccttcga agcactgatt
     1561 gatgagagca ccaaagcact ttatctggaa acgatcggta atcccgattt gaatattcct
     1621 gatttcgaag ctattgcagc cgttgccgat aaacacggta tcccattaat tgtcgataat
     1681 acttttggtg ccggtggagc tatcttccgt ccgttggaac acggagcaag cgttgtagtt
     1741 gaatcggcaa ctaaatggat tggcggtcat ggcacttcat tgggtggcgt aattgtcgac
     1801 agtggaaaat tcaactgggg caatggcaaa tttccagcat ttaccgaacc atcagatagc
     1861 tatcatggat tagtgttttg ggaagtattc ggttttgatg gcccgtttgg caatatcgct
     1921 ttcaacatac gtgcaagggt agaaggtctt cgcgattggg gtaatgctat tagtcctttc
     1981 aactcattcc tgctgttgca aggtctggaa acactttcat tgcgtgtgga ccgtcatgtt
     2041 cagaatgcat tagaattggc tacatggttg gaaaatcatc cggcagtaga atatgtaaac
     2101 tatccgggct tgaaaagcag tccttaccat gcattagcta ataaatacct gaaacgtggt
     2161 ttcggtggtg tgctttcgtt caaactgaaa ggtaatgctg aaaaagctga taagcttatc
     2221 gatagcctca aactgattag ccacctggca aacgttggtg atgcaaaatc attgattatc
     2281 cacccggcag ctacaaccca cgaacaactt tcaccggaag ataaaatctc tgcgggtgta
     2341 ttcccgggag cacttcgtat atctgttgga attgaaaata tacttgatat taaagcagac
     2401 cttgaacaag ctttcgaact gattaaataa ttggtttggt atttggaacg aaaagagcct
     2461 ctcaaattct tgagaggctc tttttttata ttatttcacc gcttccgata catattttcg
     2521 attcggcatc gtaaattact ccaaattgac cgggagcaat tccctgtagc ttttggtcag
     2581 aaaccaaatg aaaaccgttt ggcgttttca atatcttacc gggagtaaat tccggcgtat
     2641 gccttatttt aaatgtaata tctatttcgc tggaagcatt ctcccatgga ttttccgtaa
     2701 tgaaatgaaa atcacgcatg gtaaaatcat ttcc
//
LOCUS       DATDNM010000638         2799 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1038850, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000638 DATDNM010000000
VERSION     DATDNM010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1038850"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /locus_tag="VI413_10865"
     CDS             complement(<1..737)
                     /locus_tag="VI413_10865"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008658294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEY6915167.1"
                     /translation="MTEDFLDEIEEDELDEVGEGQELFEHFRFVVDKGKAILRIDKYL
                     VNCMSNTSRNRIQEAADAGNILVNGKPVKSNYRVKPLDVITIVLAYPPNEFEIIPQDI
                     PLDIVYEDDDIMLVNKQPDLVVHPGFGNFDGTLLNAIAWHMKDNPGFDANDSRIGLVH
                     RIDKDTSGLILIAKTEEAKTLLGKQFFDKTTQRRYHALVWGNVKENEGTIIGSLARDP
                     RDRMLFTVFPEGENPAAKHAVTHYKVI"
     gene            complement(759..1595)
                     /locus_tag="VI413_10870"
     CDS             complement(759..1595)
                     /locus_tag="VI413_10870"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEY6915168.1"
                     /translation="MDIKKFWKETFGGFVLKNLLIAIGIIVALSWIALIGADYYTNHG
                     ESEVIPDLRGMYIEEAQVLLAKKGLYPQVIDSVYVRGKKLGTIISQTPGPNANVKTNR
                     AVYIIINSRNVKQVALPEINDVSYRQADAMLQSLGLSVSNVEYAPSEYKDLVIEVKYK
                     GRSILPGTRVPEGSSLVLVVGNGLSVGAEMEVPALKGMSMDEAIQNVQAASFIIGAVE
                     YDVPPSGNESDYIIYRQRPAAGGSLPAGTRIDVYLTTDKARLNEVFEEEKKPEETEEQ
                     FF"
     gene            complement(1765..1923)
                     /gene="rpmH"
                     /locus_tag="VI413_10875"
     CDS             complement(1765..1923)
                     /gene="rpmH"
                     /locus_tag="VI413_10875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005840676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEY6915169.1"
                     /translation="MKRTFQPSVRKRKNKHGFRERMATANGRRVLAARRAKGRAKLTV
                     ADEARHKH"
     gene            complement(2089..>2799)
                     /locus_tag="VI413_10880"
     CDS             complement(2089..>2799)
                     /locus_tag="VI413_10880"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY6915170.1"
                     /translation="KGYDMLPLSIEAQKMFVDLSVLEADSARRNVKMLIDTGAELNAW
                     FQTFKTESVHIPQNYIRGTIGQGLNGEIKGKIGRIPQICFGAHCLQNSIVSFPDSACI
                     ADIVGNSERDGTIGSQILSRFNYIIDYGQKTFYFKPNANFRNKFSYNIAGIEVTQIFP
                     FLPQAEVWKVWEESPAAKAGVLAGDQILEVNGKKSFELNINEIKAIFQTPSKIPLKIV
                     LFRDNKEISLEIEMDNKI"
BASE COUNT          777 a          607 c          503 g          912 t
ORIGIN      
        1 tcaataactt tataatgtgt aacggcatgt ttggcagcag gattttcgcc ttcgggaaaa
       61 acggtgaaca acattcggtc gcgtggatca cgggccagcg atccaataat ggttccttcg
      121 ttttccttta catttcccca aaccaatgca tgataacggc gttgcgtggt tttatcaaag
      181 aattgtttgc caagcaaggt ttttgcttct tctgttttgg caatcagaat taaaccggaa
      241 gtgtctttgt caatccgatg taccagtccg atacgcgaat cattggcatc aaaacccgga
      301 ttgtctttca tgtgccacgc aatggcattg agcaacgttc cgtcgaaatt gccaaatccg
      361 ggatgcacaa ccaaatccgg ttgcttattg acaagcatta tgtcatcatc ttcgtataca
      421 atgtccagcg gaatgtcctg cggaataatt tcaaattcat tgggggggta agcaagtaca
      481 atggtaatca catccaatgg tttgaccctg taattagact ttaccggttt cccgttaacc
      541 agaatatttc cggcatcagc cgcttcctga atcctgttgc gcgatgtatt ggacatacag
      601 ttaaccagat acttatcgat gcgtaaaatg gctttacctt tgtccaccac aaatctgaaa
      661 tgttcgaaaa gctcctgccc ctctcctact tcatccaatt catcttcttc tatttcgtcc
      721 aaaaaatctt ctgtcacgtg ttgatgatta agtgagtttt agaaaaactg ttcttcagtt
      781 tcttccggtt ttttttcttc ttcgaaaact tcgtttaagc gcgctttatc ggtagtcaga
      841 tacacatcta tcctggttcc ggcaggcaac gaacctccgg cagccggacg ctggcggtaa
      901 atgatataat ccgattcatt tcctgacggc ggaacatcat attcaacggc tccaattatg
      961 aacgacgccg cttgaacatt ctggatagct tcatccatac tcattccttt aagagccggt
     1021 acttccattt ctgcacctac gctaagccca tttcctacaa ccaataccag cgagcttcct
     1081 tccggaacac gcgttccggg caaaatgctc cggcctttgt atttaacttc tataaccaga
     1141 tctttgtatt ccgatggagc atattccaca ttggaaacgc tcaggcctaa agattgtaac
     1201 atagcatctg cctgacgata agatacatcg tttatttcgg gtaaagccac ctgcttgaca
     1261 ttgcgggaat tgataataat ataaaccgca cgatttgttt ttacattggc attaggaccc
     1321 ggagtttgtg aaataatagt tcccagtttt ttgccacgca cataaaccga atcaatcacc
     1381 tgcggataaa gtcctttttt ggctaataaa acctgagctt cttcaatata catccctctt
     1441 aaatcgggaa ttacttccga ctcgccatga ttcgtataat aatcggcacc tattaatgca
     1501 atccatgata atgccacaat aataccgatt gcaatcagca aattttttaa tacaaaacca
     1561 ccaaaagttt ctttccagaa tttttttata tccatagccg attgtaatta tatatcttga
     1621 ttatcagtga aataaaccgt acgaaaagca ttttaaattt gatgccaaaa ataatcaatt
     1681 tattgcttcg taaaggcata aaaacaaaaa aagtaaaaac ttacatgaag tctttacttt
     1741 ctttatactg ttttggcaga ttgattagtg tttgtgacgt gcttcatctg caactgtaag
     1801 ttttgctcta cctttggcac gacgggctgc taatactctg cgtccgttag ctgttgccat
     1861 tctttcacgg aatccgtgtt tgttttttct ttttctaaca gaaggttgga atgtcctttt
     1921 cattgctttg tgtattttgc gttattatta ttccatctcg gagtttggga gtgcaaaaat
     1981 agatgttttt tccgaaactg caaactgttg ataacttttt attgctaaaa tacaaaaata
     2041 acacttttat tattcctcaa ttatgatttt ttcaaaaact caggcacttt aaatcttgtt
     2101 atccatctct atctcgaggg atatttcctt attatctctg aacaacacta ttttcaaggg
     2161 tattttggat ggagtctgga aaatagcctt aatttcgttt atgtttagtt caaatgattt
     2221 tttaccgttg acttccaaaa tctgatcacc agcaagtaca ccggctttgg ctgcaggaga
     2281 ttcttcccaa accttccata cttcggcctg aggtaaaaag ggaaatatct gggttacttc
     2341 aattccggca atattatagc tgaatttatt tctgaaattt gcattaggtt taaagtaaaa
     2401 tgtcttttgc ccataatcga ttatgtaatt aaaccggctg agaatctggc ttccaatagt
     2461 tccgtcacgt tctgaattac ctacaatatc tgcaatacat gctgaatccg gaaacgaaac
     2521 tatcgaattc tgtaagcaat gtgctccaaa acaaatttgt ggaatgcgac cgatttttcc
     2581 tttgatttca ccattgaggc cctgccctat tgtaccgcga atataatttt gaggaatatg
     2641 aacagattcg gttttgaaag tttgaaacca ggcattcagt tctgcaccgg tatcgatgag
     2701 catttttaca tttcttcggg cggaatcagc ttcgagaacc gataagtcga caaacatttt
     2761 ctgggcttcg atgcttagcg gcaacatatc atacccttt
//
LOCUS       DATDNM010000639         2980 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_505036, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000639 DATDNM010000000
VERSION     DATDNM010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2980
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_505036"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2058)
                     /locus_tag="VI413_10885"
     CDS             complement(<1..2058)
                     /locus_tag="VI413_10885"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6915171.1"
                     /translation="MKKTKLICLILLTTIGIGKAQNYTISGYITDEKSGETFISASVY
                     DSNTKKGTVSNTYGFYSLTIPKGKVSMIYSYVGHAPQELNFSLNKDTVINIHLKESIE
                     LKEVTVTANRKELGVQGSQMSAIEVPISQLKTVPTLFGETDILKALQLLPGVKPGVEG
                     AAGFYVRGGGPDENLFLLDGIPIYNVNHMGGFFSVFNADAIKSVTLYKGSFPARFGGR
                     LSSVLDIQMNDGNNQKLHGNLTVGLISSIANLEGPLFDKNTTFSLSARRTYFDILTQP
                     IINYAARQNGSGEKASAGYYFYDVNAKVTHKFSDTDRLFLSTFMGDDVIYSNIQSSNS
                     NYSNGSNSSRLKLGWQWGNFVTALRWNHIINNKLFMNTTAAYTRYRFNMDIGTTDVEK
                     TLVPTNSTTRSTNLGYRSGIEDYSAKVDFDYTPNPNHDIKFGCSYTYHTFRPGVTVTQ
                     FKFQNDTSKSQMDTVIGDKNIFSHETALYFEDNITINHFIKANAGMHYSAFFVQGKFY
                     NSLQPRLGVRLLVNDKLSFKAGYAAMSQSIHLLSNNNISLPTDLWVPVTKRIKPMNSH
                     QYSVGVFYNLLNLVDLSVESYYKSMNNLVEYKDGASFIGSSTGWEDKVCMGRGWAYGV
                     EFLAQKSIGKTTGWIGYTWAKSERLFDRPGEVLNYGEVFPTKYDIRNYLSIVVSHKFN
                     KKID"
     gene            complement(2236..2880)
                     /locus_tag="VI413_10890"
     CDS             complement(2236..2880)
                     /locus_tag="VI413_10890"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEY6915172.1"
                     /translation="MKKAIVIGGTGMVGTQLIKQLIEDKNYSEVVSLVRRASGISHPK
                     LNEQVIDFDQPDSWKTLITGDVLFSTLGTTIARAKTKDAQYKVDFTYQYNVAEIAAAN
                     GVPSYVLVSSAGATSKSNVFYSNMKGKLEDAVKQLPFKVISIIRPGQLAGEREEKRTT
                     EKIALSIMNGLNKMGLLQRYKPIQGREVAQAMIHAADKQQSGSYTLNEVFDLAK"
BASE COUNT          821 a          577 c          586 g          996 t
ORIGIN      
        1 atcaattttt ttattgaatt tgtgggaaac tactatgctg agatagtttc ggatatcata
       61 tttcgtagga aaaacttcgc cataatttaa aacttcgcca ggcctgtcga ataaccgttc
      121 agatttagcc caggtatagc caatccaacc ggttgttttt ccaatacttt tttgcgcaag
      181 gaattcaact ccataggccc agccgcgtcc catgcaaact ttgtcttccc agccggtact
      241 ggatccaata aatgaagctc catctttgta ttcaaccaga ttattcatgg atttgtaata
      301 actttcaacc gataaatcga ccaggttcaa cagattgtaa aacaccccaa cagaatattg
      361 gtgtgaattc attggtttaa ttcgtttggt cacaggaacc cataaatctg ttggcaggct
      421 gatattatta ttcgacaata agtgaatgct ttggctcatg gctgcgtaac cggccttgaa
      481 agagagtttg tcatttacta ataagcgtac tccaagtctg ggttgaagtg aattgtaaaa
      541 cttgccctga acaaaaaaag ctgagtaatg catcccggca tttgctttta taaaatggtt
      601 gatagtgatg ttgtcttcaa aatacaaggc tgtctcgtgt gagaagatat ttttatcgcc
      661 tatcactgta tccatttgtg atttagaagt atcgttttga aatttgaatt gagtcaccgt
      721 aacacccggg cgaaaagtat gataggtgta actgcagcca aattttatat catggtttgg
      781 atttggtgta taatcgaaat caactttggc cgaataatct tcaatgccgg agcgataccc
      841 cagatttgtc gatcgtgtgg ttgagttggt gggaacaagt gttttttcta cgtcggttgt
      901 tccgatgtcc atattgaacc ggtatcgcgt ataggctgcg gttgtgttca taaataactt
      961 attgttaata atatgattcc aacgaagtgc tgtgacaaag tttccccatt gccagcccag
     1021 ttttaatctg cttgagtttg aaccgttgct ataattagaa ttactgcttt gaatattact
     1081 gtaaataaca tcatctccca taaatgtact cagaaaaagc cggtcggtgt ccgaaaattt
     1141 atgagtaact ttagcgttta catcatagaa atagtatcct gcagaagctt tttcgccact
     1201 accattttgt ctggctgcgt aattgataat tggttgtgta agaatgtcga aataggtacg
     1261 gcgggctgat aaactgaatg tggtgttttt atcaaaaagc ggtccttcaa gattagctat
     1321 cgatgaaatc aaccctacgg ttaagtttcc gtgcagtttc tgattgtttc catcattcat
     1381 ttgtatatca agtacagacg ataaccgacc tccaaaacgg gccggaaaac ttcctttata
     1441 caatgttaca cttttgatag catcggcatt aaatacagag aagaagccac ccatgtgatt
     1501 tacgttgtaa ataggaatgc cgtcgagcaa aaataaattc tcatccggtc cacctccgcg
     1561 gacatagaat ccggctgcac cttctactcc gggttttact cccggaagca gttgaagcgc
     1621 ttttaaaata tcagtctcac caaataaagt gggcacggtc ttcaactggc tgattggtac
     1681 ttctattgca ctcatctgtg aaccttgtac gcccagctct tttctgttgg ctgttacagt
     1741 aacttctttc agttcaatgg attcttttaa gtggatatta ataactgtat ctttattcag
     1801 gctgaaattt aattcctgtg gagcatgtcc aacgtaagaa taaatcattg agactttgcc
     1861 tttggggata gtcagcgaat aaaatccgta cgtgttgctc acagttcctt ttttcgtatt
     1921 tgaatcgtaa accgaggcac tgataaatgt ttccccgctc ttctcatcag taatatatcc
     1981 actgattgtg taattctggg ctttaccaat cccaattgta gtaaggagaa taagacagat
     2041 taattttgtt ttcttcataa agtatataat gtgtttggaa atttatacaa acttaacgga
     2101 agtgttttaa ctatgttgct ttttgaactt aaatttattg tttattaaga gtttattacg
     2161 atgtagttaa cataaataaa aacgcctcac atattcaaac gaaatgtgag gcgtatagtt
     2221 ttgcaatgat tggcactatt tggccaggtc aaaaacttca ttcagggtat aggagccaga
     2281 ttgttgttta tcagcggcat gaatcattgc ctgtgctact tcccggccct ggataggttt
     2341 gtaacgttgc aacagtccca ttttatttaa tccgttcatt atagataaag caattttttc
     2401 agttgttcgt ttttcttcac gttcgccggc tagttgtccc gggcggataa tgcttattac
     2461 tttgaatggt agttgtttta cagcatcttc cagtttgcct ttcatgttac tgtaaaatac
     2521 gttcgatttt gaagttgcac cggctgacga aaccagcacg tatgaaggaa ctccgtttgc
     2581 agctgcaatt tcagcaacat tatattgata ggtgaaatca accttgtatt gggcatcttt
     2641 tgttttggcc cgggcaatgg tggttccaag ggttgaaaat aatacatcgc ctgttatcag
     2701 tgttttccaa ctgtctggct ggtcaaaatc aatgacttgt tcattcagtt tgggatgtga
     2761 aatgccgctt gcacggcgaa ccaatgaaac aacttcggaa taattcttat cctcaattaa
     2821 ttgcttaata agttgtgtgc caaccattcc ggttccgcct ataacaattg ctttcttcat
     2881 attttttctt ttgccttact gcttgccttt tagtgcttgc tgctttttta gttatcaata
     2941 tgtatatccc tgaatcccag gaagtacaat acaccgtcaa
//
LOCUS       DATDNM010000640         3231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1039026, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000640 DATDNM010000000
VERSION     DATDNM010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3231
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1039026"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..973
                     /locus_tag="VI413_10895"
     CDS             <1..973
                     /locus_tag="VI413_10895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4-phosphoerythronate dehydrogenase"
                     /protein_id="HEY6915173.1"
                     /translation="EKLLAGSSVKFIATATIGFDHIDTDYCEANGIQWTNAPGCNSKS
                     VEQYIASTLMVLAEKNGWNLSEKCIGVVGVGNVGSKVARICETFGMKVLLNDPPRERA
                     EGSEQFVSIHTIMEEADIITLHVPLNIRGEDVTFHLGNESFLSALKKKPVLINSCRGE
                     VIETNAVKVALKLGQLSGFVCDCWENEPDIDLDLLALTEIATPHIAGYSKDGKATGTL
                     MSVQAINDFFSLGLNNWQPSGVELPLNPVIEIDGAGLSEQEILSKAILHTYDIRNDDC
                     DFRKDTSLFEQLRGDYPTRREFPAFTIKAKNVDGNTLEKLKQVGFKI"
     gene            1115..2569
                     /gene="gnd"
                     /locus_tag="VI413_10900"
     CDS             1115..2569
                     /gene="gnd"
                     /locus_tag="VI413_10900"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018109684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HEY6915174.1"
                     /translation="MKQKADIGLIGLAVMGENLVLNMESKGFTVGVFNRSVEKVDKFI
                     AGRGAGKNFIGAHSIKELCDSLEKPRKVMMLVKAGQAVDDFIEQLIPHLEPGDIIIDG
                     GNTHFPDTIRRAKYVESKGLLFVGTGVSGGEEGALLGPSMMPGGSPAAWPAVKEIFQA
                     VSAKVEDGTPCCDWVGEGGAGHFVKMVHNGIEYGDMQIINEAYQIMKDLLGLSADEMH
                     EVFKEWNKGDLDSYLIEITRDILAVKDVDGTPLVEKILDTAGQKGTGKWTGVSALDLG
                     VPLTLIGESVFSRCLSAQKDIRVKASKVISGPVVNFTGDKKQLIDDLKDALFGAKIIS
                     YAQGYNLMMEAANEYKWNLNYGGIALMWRGGCIIRSTFLGDIKKAFDVNPGLENLLLD
                     PHFKAIVENAQAGWRRVCAAALTNGIPAPALTSALCYFDGFRSERLPANLLQAQRDYF
                     GAHTYERIDKPRGEFFHTNWTGRGGDTASTTYVV"
     gene            3032..>3231
                     /locus_tag="VI413_10905"
     CDS             3032..>3231
                     /locus_tag="VI413_10905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915175.1"
                     /translation="MKKTYMIVCLAMMLGISGQTMAQTDPGTVNLTHKWTFEDGTAND
                     VVGTLNGTLIDGATVSGGALNTT"
BASE COUNT          975 a          589 c          718 g          949 t
ORIGIN      
        1 cgagaaattg cttgccggtt cttcagtgaa gtttattgcc actgctacta ttggtttcga
       61 tcatatcgat accgattatt gtgaagcaaa cggcattcag tggacgaatg cacctggttg
      121 taattccaaa tcagtggagc aatatattgc ttccacatta atggtgctgg ccgaaaagaa
      181 tggttggaat ctgagtgaaa aatgcatcgg tgtagtggga gtgggcaatg ttggaagcaa
      241 ggtagcccga atttgcgaaa ctttcggaat gaaagtactg ctaaatgacc caccccgcga
      301 acgtgccgaa ggttcggagc aatttgtttc tatccacacg attatggaag aagcagatat
      361 cattacgctg catgttccgc tgaatataag aggcgaagat gtcactttcc atttgggaaa
      421 tgagtccttc ttaagtgccc tgaaaaagaa acctgtgctg attaactctt gccgtggcga
      481 agtaattgaa accaatgctg taaaagttgc gctgaaatta ggacaacttt caggttttgt
      541 ttgcgactgt tgggaaaacg aaccggatat tgaccttgac cttttagcat tgactgagat
      601 cgcaacgcca catattgctg gttactctaa agacggcaaa gcgaccggga cgttgatgag
      661 tgttcaggca ataaacgatt ttttttcact cggactgaac aactggcagc cttcaggggt
      721 tgaattacct ttgaatccag ttatcgaaat tgatggagca ggtttgagtg aacaggaaat
      781 cttgtcaaaa gccattttgc atacatatga tatccggaat gatgactgtg attttaggaa
      841 agatacttca ttattcgaac aattgcgtgg tgattatcct acccgcagag aatttcctgc
      901 atttacgatt aaggcaaaga atgtagacgg aaatacttta gaaaaattaa aacaagttgg
      961 gtttaaaatt taaaccacat agacacatag aaatcatagg aaactgtgtc ttggtggttc
     1021 aagaaattat aataacaaat cattaataaa caaaatcata gaaatatcag aacttaatga
     1081 gttctatgtg tctatgtggt tcaaaaaaag aattatgaaa caaaaagcag acattggatt
     1141 aatcgggttg gctgtaatgg gcgaaaacct ggtattgaac atggaaagca aaggcttcac
     1201 tgtaggcgtt ttcaaccgtt cggtagaaaa agtggacaaa ttcatagccg gacgtggtgc
     1261 aggtaaaaac tttatcggag cacactctat caaagaactt tgcgattcac tggaaaaacc
     1321 tcgcaaagta atgatgttgg taaaagcagg ccaggctgtt gatgacttta tcgaacaact
     1381 tattcctcat ttggagccgg gagatatcat tattgacggt ggtaacacac atttcccgga
     1441 tactattcgt cgtgccaaat acgttgaaag caaaggtctt ttgttcgtag gtaccggtgt
     1501 ttcgggtggt gaagaaggtg ctttgttagg accatctatg atgccgggcg gttctcctgc
     1561 tgcatggcca gctgtaaaag aaattttcca ggcggtatct gctaaagtgg aagatggtac
     1621 tccatgctgc gactgggttg gtgaaggtgg cgcaggtcac ttcgtaaaaa tggttcacaa
     1681 cggtattgag tatggcgata tgcaaattat caacgaagct taccagatta tgaaagattt
     1741 gttgggctta agtgctgacg aaatgcatga agtattcaaa gaatggaaca aaggtgatct
     1801 ggattcatac ctgattgaaa ttacccgtga cattctggct gtaaaagacg ttgacggaac
     1861 tccattggtt gaaaaaatac tcgatacagc aggacaaaaa ggaaccggta aatggacagg
     1921 cgtttctgca cttgacctgg gtgtgccatt gacattgatt ggagagtcgg tattttcacg
     1981 ttgtttgtca gctcagaaag atatccgcgt aaaagcttct aaagtaatca gcggacctgt
     2041 tgtaaatttc accggtgata aaaaacaact gatcgacgat ttgaaagacg ctttattcgg
     2101 agctaaaatt atttcatatg ctcaaggcta caatctgatg atggaagctg cgaatgagta
     2161 taaatggaac ctcaactacg gaggtatcgc attgatgtgg cgtggtggat gtattatccg
     2221 ttctactttc cttggcgata ttaagaaagc atttgatgta aatcccggtc ttgaaaactt
     2281 attgctcgac ccacacttca aagctattgt tgaaaatgct caggccggct ggcgtcgtgt
     2341 ttgtgctgct gcacttacta acggtattcc tgcacctgca ttgacttcag cgctttgcta
     2401 tttcgatggt ttccgcagtg aacgtcttcc tgctaacttg ctgcaggcac aacgtgacta
     2461 ctttggagct catacttacg aacgcattga caaacctcgt ggcgaatttt tccatactaa
     2521 ctggaccggc cgtggtggtg atactgcttc cacaacgtat gttgtataac ctttatatct
     2581 gattattact gatggtgtga ccaaagtcag ctcctcagtc gattcaaaaa aatccctttg
     2641 ttcaaccgaa caaagggatt ttttttagta tcacttcgac aacatgattt tccgcaattt
     2701 ttcttagaac taaggtgatt agaacagtaa aatggaacat taaggagcta aatacaccga
     2761 ttgtaccaat atctgtcctt tttcggtcat tttttttcta aaacatattt agtgaaattc
     2821 tatctttgtt ctgttgattt taatggaaaa tgccttatta gaatggcatc ttcctgaaat
     2881 aaatattcaa ccctatggag ccagatacct ttaaatttct tttctatgaa gtttgaaatc
     2941 tgacattatg ctcttattac ctaaaagtat aaaataattt actaaatgtt attcattgat
     3001 ttataatatt caccttttaa ttaattatta catgaaaaag acttacatga ttgtatgcct
     3061 tgctatgatg ttgggcataa gtggacaaac aatggctcaa actgatccgg gaacagtaaa
     3121 cctgacccac aagtggacat ttgaagatgg aacagctaat gacgtggttg gaactctaaa
     3181 cggaacttta attgatggcg caaccgtctc cggtggtgct cttaatacta c
//
LOCUS       DATDNM010000641         3329 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_717647, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000641 DATDNM010000000
VERSION     DATDNM010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3329
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_717647"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(654..2312)
                     /locus_tag="VI413_10910"
     CDS             complement(654..2312)
                     /locus_tag="VI413_10910"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6915176.1"
                     /translation="MKKEKDILSETDLLRKKAEEKLNKKDSGNSQALSEVDTLKLLHE
                     LEVHQIELEMQLEELQVARSKAEIANERFTDLYDFAPAGYFTIDRDSKISELNLSAAK
                     MLGAGRSNLINKKISQFVTQDTLPVFNSFLLKVFEPNPKATCDIALNISGKPTSYLHL
                     EGMIFDDENKCQITAIDISENKRSEELLRFSEMRYRRLFESAQDGILILDAINQEIID
                     VNPSVIKKLGYFYDELLGKQLWEEGIFKNSEEFTNTFTELHNKGSIRIEDLSVETKNG
                     NLIVVEFVSNIYVVDELKVIQCNIRDITKRKQAEEALKESEARLRELNATKDKFFSII
                     AHDLKSPFNAINGFCNLLISQIKEKDYLGIEQYAGIILDSSQRAMDLLINLLEWSRSQ
                     TGTMNFNPERIDLISLIHQVTEISNDIALQKSISILTHLPDHVIAFADKDMLNAIFRN
                     LISNAIKFTHPGGEIIISVEQEDEDWKVTIADNGVGIKKEALDNLFRIDTSYKTTGTK
                     NEIGTGLGLILCKEFIDKHGAKIWVESKVGVGSRFYFTIPNTTA"
     gene            complement(2393..>3329)
                     /locus_tag="VI413_10915"
     CDS             complement(2393..>3329)
                     /locus_tag="VI413_10915"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY6915177.1"
                     /translation="DLQNTRDEMMISQEELQSANEELQSTNEELQSANEELTTSKEEM
                     QSMNEELHIVNVELQSKIDDSARVNNDMNNLLNSIEIATMFLDRDLKIRQFTPSATRI
                     FKLIQSDIGRPFSDQATDLVYPELYEDAREVLRTLVFIEKARQTIDGRWYNIRIMPYR
                     TFEDKIDGLVITFVDITKSKQLEQALKKNQTMLQSFIQTVPGVIVGLSLDGKIIEFNP
                     EAEKLFSCKREDVMSKKYVDLFIHKSLRKQVEEDMKNLLAGQLPNQFINIVKTLNNVE
                     LKIEWSAHQLLDDQGKPIGLIAIGVNIFNNEMSQP"
BASE COUNT          971 a          662 c          528 g         1168 t
ORIGIN      
        1 tacatttaca ttaaaattca actacactca ttaaatcgtt taaaaattct caattatcag
       61 cattaggcaa tattccattt tccacaattt ctataaacct ttatgcattg ccatcaagtt
      121 ttttaaagct cttttactca gcactatcaa ttaacgaaca tcggatgacg taaataatta
      181 attcatattc aacgttttat gtttataaat cattctcctt caacaccttt aatcgcttaa
      241 cagtgtgtaa atatattctc tgataataac tttttaatca atttttctaa atagctacta
      301 tttttttgtt ttataattca ggaatgagtg ctaaggtaat aaataaagaa acagttagtt
      361 acaataatcc aaaaaaaata tgaatataaa atatccataa tgtattttgt ttcctgacta
      421 taataaaagc tgcagtagat aatgcgttca taacttttga tgttattata cttgaagtga
      481 ttaggggaaa ataggcatat gaaaatttaa ataactggga atcttgccct caaattggca
      541 aaatcgcatg tgctttgggc aaaaacgaag tccatttata caaaacagga gaataatttc
      601 ctgagaaatc atcgatatct atttatatct atctgatatt atttttcttt cagctatgct
      661 gtcgtattgg gtattgtaaa ataaaacctg ctcccaaccc ctactttact ttccacccat
      721 attttagcac catgtttgtc tataaattct ttacaaagta ttaaaccaag gccggttccg
      781 atttcatttt tagtgcctgt ggttttgtaa ctggtatcaa tacgaaacaa attatccaaa
      841 gcctcttttt ttatacccac cccgttatcg gcaatggtta ccttccagtc ttcgtcctcc
      901 tgctcaacag aaatgataat ctcacctcca gggtgagtga atttaatcgc atttgaaatc
      961 aggtttctga aaatggcatt caacatgtct ttatcagcaa aggctattac atgatcgggc
     1021 aaatgagtaa gtatagagat tgatttttgt aaagcaatgt catttgatat ttctgtaacc
     1081 tggtgaatca aagaaatgag atcaatccgc tcgggattaa agttcatggt tccggtttgc
     1141 gaacgcgacc attccaataa attaatcagt aaatccattg cccgctgtga ggaatcaaga
     1201 ataattcccg catattgctc tatgccaagg tagtctttct ccttaatctg actgatcaat
     1261 aggttgcaaa aaccattaat agcattgaag gggcttttca gatcatgagc gatgatggag
     1321 aaaaacttgt ctttcgtagc atttagttct cgtaaacgtg cctcactttc cttcagggct
     1381 tcttctgcct gcttgcgttt ggtaatatcc ctgatattgc attgaattac ctttaattcg
     1441 tcaacaacat aaatattgct gacaaactcc actacaataa ggtttccatt ttttgtttca
     1501 accgacaggt cttctatgcg aatagaacct ttattatgca attcggtaaa ggtatttgta
     1561 aattcctcgc tatttttaaa aatgccctct tcccaaagtt gtttgcccaa taattcgtcg
     1621 taaaaatatc caagcttttt aatcacactc gggtttacat ctataatctc ttgattgatg
     1681 gcatccagaa tcaatatacc atcctgtgca gattcaaaca gacgcctgta tcgcatttca
     1741 gaaaaccgta ataattcttc cgatcgctta ttttcagata tatcaatagc cgttatctgg
     1801 catttgtttt catcgtcaaa aatcatccct tccagatgaa ggtagcttgt tggtttgcct
     1861 gaaatattta atgcgatatc gcaggtagct tttggattag gttcaaagac tttgagtaaa
     1921 aagctattga acaccggtaa ggtgtcctgg gttacaaact gactgatttt tttgtttatc
     1981 aaattggaac gccccgcccc aagcattttg gcagcactta aattcaattc gctgatctta
     2041 ctgtcccggt cgattgtaaa atatcctgcc ggtgcgaaat cataaagatc agtgaacctc
     2101 tcgttggcaa tttcggcttt acttcttgct acctgcaatt cctcgagctg catttccagt
     2161 tctatctgat ggacttccag ttcatggagc agttttaatg tatccacttc cgaaagagcc
     2221 tgactattgc ctgaatcctt cttatttaat ttctcttcag cttttttgcg aagcaaatcg
     2281 gtttcagata atatgtcttt ttctttcttc attggtaaat tattagtttt tcaaacaaaa
     2341 ctatggtaat gcacaaatct ccaaagaatt tatttttcta taaacgaaat gtttatggtt
     2401 gactcatttc attattgaaa atattaacgc ctattgcaat cagtccaatt ggctttccct
     2461 ggtcgtccaa aagctgatga gccgaccatt caattttaag ctcaacatta ttaagcgttt
     2521 ttacaatatt tataaactga ttgggtaatt gtcctgccag taaatttttc atatcctcct
     2581 ccacttgttt gcgtaaagat ttatgtataa acaaatcaac atactttttg ctcatcacat
     2641 cttcccgctt acagctgaac agcttttcag cttcagggtt aaattcaatt attttaccat
     2701 ccaacgacaa acccacaata acacctggca ccgtctgtat gaatgattgg agcatggtct
     2761 ggtttttctt aagagcctgt tccaattgtt ttgattttgt aatgtcaacg aacgtaatta
     2821 caagtccatc aattttatct tcaaaagtac ggtagggcat gatacggatg ttataccatc
     2881 ttccgtcaat ggtttgtctg gctttctcaa taaaaacaag ggtgcgtaat acttccctgg
     2941 catcctcata caattcaggg taaaccagat cggtcgcctg atctgaaaaa ggcctgccga
     3001 tatcgctttg tattaattta aatattcgtg ttgcactcgg ggtaaattgc cggattttca
     3061 aatccctgtc caggaacatg gttgcaattt caatactatt gagcaagtta ttcatatcgt
     3121 tatttaccct tgccgaatca tctattttac tttgaagttc tacattgaca atatgcagtt
     3181 cttcgttcat gctctgcatt tcttccttgg aagtggtcag ttcttcattg gctgattgta
     3241 actcttcatt agttgactgc aattcctcat tagctgattg tagttcttcc tgtgaaatca
     3301 tcatttcatc ccgtgtattt tgaaggtct
//
LOCUS       DATDNM010000642         2586 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_398537, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000642 DATDNM010000000
VERSION     DATDNM010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2586
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398537"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            250..441
                     /locus_tag="VI413_10920"
     CDS             250..441
                     /locus_tag="VI413_10920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915178.1"
                     /translation="MGAIVIKSDSKSLKLIMEIAKRMGGQVAKLDDDQLEDFTFGEML
                     KEAKTGISVSRETIMQKLK"
     gene            438..710
                     /locus_tag="VI413_10925"
     CDS             438..710
                     /locus_tag="VI413_10925"
                     /inference="COORDINATES: protein motif:HMM:NF016876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEY6915179.1"
                     /translation="MNVIFDRSFNKSIDKINDKSVKERLLALIVSMEQANSISELTAI
                     KPMKGHTGYYRIRIGDYRVGFELINSNEILLILVAHRKDIYKRFPK"
     gene            complement(787..1326)
                     /locus_tag="VI413_10930"
     CDS             complement(787..1326)
                     /locus_tag="VI413_10930"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY6915180.1"
                     /translation="MKALKIAGLVLLGIIILALIAGLFINGKYAVEREITINKPKQEV
                     YDYVKYLKNQNNYSVWAKTDPAMKKEFTGEDGTVGFISAWDSQNPDVGKGEQKIIKIS
                     DGERIDYEIHFIKPFESTDYAYMTTEAVSDSQTRVKWGFNGEMKYPMNLMLLFMNMEK
                     MLAPDLENGLSSLKGIMEK"
     gene            complement(1346..1813)
                     /locus_tag="VI413_10935"
     CDS             complement(1346..1813)
                     /locus_tag="VI413_10935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018052548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEY6915181.1"
                     /translation="MQSKATTPDEYINEVADHQKEAVIQLRKTIIDNLPEGFEEQMSY
                     GMIGYVVPFSIYPKGYNVKPKVPLPLMNLAAQKNFIALYHTGIYANKELLDWFTEEYP
                     KHSKLKLDMGKGCIRFKKLDQIPYALIGELATKMGVNDWVQLYEATFLKSKMN"
     gene            complement(2278..>2586)
                     /locus_tag="VI413_10940"
     CDS             complement(2278..>2586)
                     /locus_tag="VI413_10940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915182.1"
                     /translation="TITTYRRMFYLAVIILLINICVSFTAGMYAGLKFTFGNASGGMD
                     HIPATKILAMIGIGLAILIPLVAAVFFILRWGFNKLYGRYLISLQETMKELDDTSALE
                     "
BASE COUNT          798 a          465 c          477 g          846 t
ORIGIN      
        1 gtagattggt taaatgcttg taagggtatt aacagaatca atatattaat aatcttactc
       61 atagcggtct ttttttagtg ccatttacct tgaatatatc cctaaatgta tccttctttg
      121 ttgattatcc aaaaatagta accatattta ttttattcct tttggcattg gtgtgtagtt
      181 aagtaaccga tccaactgat tacaataaaa agttgtattt ttgaatagtt caaatttaaa
      241 aattaaaaca tgggagctat tgtaataaaa tcagactcaa aaagccttaa gttgattatg
      301 gaaatagcca aacgcatggg gggacaagtc gcaaagcttg acgatgacca attggaggat
      361 tttacttttg gggaaatgtt aaaagaggct aaaactggca tatcagtcag tcgtgaaaca
      421 atcatgcaga aattaaaatg aatgtcattt tcgatcgttc attcaataaa agcattgaca
      481 agatcaatga caaatctgta aaggaaaggc tacttgcttt aatcgtttca atggaacaag
      541 caaatagcat ttctgaactt actgcaataa aaccaatgaa aggacataca ggctattacc
      601 gtatcagaat aggcgattat cgtgtaggtt ttgaattaat taacagcaat gaaatattat
      661 taatattggt cgcccaccgt aaggatattt acaaacggtt tccaaaataa ctatagtgct
      721 taagcaaaaa gccacttaga aattatctca gtggctttac tatttttttt gattatgagt
      781 ttatttctac ttttccataa tccctttcaa gctgcttaac ccattttcca ggtcgggagc
      841 aagcatcttt tccatattca taaaaagcag catcaggttc atggggtatt tcatctcccc
      901 gttaaagccc cattttaccc tggtttggct atctgaaaca gcctccgttg tcatataggc
      961 ataatcggtt gactcaaatg gcttgataaa atgaatttca taatcaatac gttcaccatc
     1021 tgaaattttg ataatctttt gttcaccttt acccacatca gggttttggc tgtcccatgc
     1081 tgaaataaat ccaacagtgc catcttcacc ggtaaactct tttttcatgg ccgggtcagt
     1141 cttagcccat acgctgtagt tgttctgatt tttcaaatac ttcacatagt cgtaaacttc
     1201 ctgtttgggc ttattgatag taatttccct ttcaaccgcg tatttgccat tgataaaaag
     1261 tcctgcgatt aatgccaaaa taatgatacc taacaatacc agtcctgcaa tctttagcgc
     1321 tttcataagt tttattttag ggtgattaat tcattttgct tttaagaaag gtggcttcat
     1381 aaagttgtac ccaatcgttg actcccatct ttgtggccaa ttcaccaatc aaggcatagg
     1441 gaatctggtc aagtttcttg aaacgaatac accctttacc catatccagc tttaatttac
     1501 tgtgtttggg atattcttcg gtgaaccaat ccaacaattc tttattggca taaatgcccg
     1561 tgtggtaaag agcaatgaag tttttctgag ctgccaggtt cattaggggc agcggtacct
     1621 tgggttttac gttatagcct ttggggtaaa ttgaaaaagg caccacatag ccaatcatgc
     1681 cataactcat ttgttcttca aaaccttcag gcaggttgtc aatgattgtt tttcggagtt
     1741 gaataactgc ttccttttga tgatcggcaa cctcattgat gtactcatcc ggagtggtgg
     1801 cttttgactg catagtaatt aattagttta gagaattgtt aaattaacaa ttgagtaaat
     1861 ataaaggttt tataatgatg tttagtttgg taaggtattt ctcctgaaat tataaaggat
     1921 caggtacaaa agttggttga taaaataaag aatcagtcaa aggcaatcca ccggattctt
     1981 aaatcggatc cccctggtat ttccacaaag gctaagtaaa ggctatattg atcctatatt
     2041 aaaattatat ttttgaaaac tttatttaaa cccagtatag ccttgacata gggttaatat
     2101 aagccttatg gaaaactttg ctgatttaca ttttaaatgg cttgtagttt atgatgacgg
     2161 gattaaccta aagtgtaata acttttaggc agtcgaataa ttgtacttcg ccctatgaac
     2221 ttgatccact gtaaaaaacg gttgattaat aagatactta tagcctggtt ttgattttta
     2281 ctccagggca gaagtgtcat ccagttcttt cattgtttcc tgaaggctaa tcagatagcg
     2341 gccgtagagt ttattaaatc cccaacgcag aataaagaat actgctgcga ccaggggaat
     2401 cagaatggcc aatccgatac caatcatggc gagtattttt gttgccggga tatgatccat
     2461 accaccggaa gcatttccaa aggtgaattt taaccctgca tacataccgg cagtgaaact
     2521 tacgcagatg tttatcagca gtatgattac cgccaggtaa aacatgcggc gataggtggt
     2581 gatggt
//
LOCUS       DATDNM010000643         2073 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_825804, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000643 DATDNM010000000
VERSION     DATDNM010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_825804"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..309)
                     /locus_tag="VI413_10945"
     CDS             complement(<1..309)
                     /locus_tag="VI413_10945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006800691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEY6915183.1"
                     /translation="MCAFLLTSFFSNAQDWPNLNRYRAENALVGLPSKGEKRVVFIGN
                     SITQGWKETRPDFFSKNPYICRGISGQTTPQMLVRFRQDVISLQPKVVVILAGTNDIA
                     G"
     gene            complement(382..810)
                     /locus_tag="VI413_10950"
     CDS             complement(382..810)
                     /locus_tag="VI413_10950"
                     /inference="COORDINATES: protein motif:HMM:NF024170.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEY6915184.1"
                     /translation="MLFKEDISIEKANELFNDSEKVLKLIADIKWKDGFACRNCGHTN
                     FCEGKTPSSRRCTRCKKEESAAANTIFHNIKFPINKAFYIAYNVCVLGSDFSTYNYSD
                     QLGLNQMTCWKFRKRIQNCISKLEGNEKSKIQTILLSEYK"
     gene            964..1278
                     /locus_tag="VI413_10955"
     CDS             964..1278
                     /locus_tag="VI413_10955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY6915185.1"
                     /translation="MIETLKKLFGVAPKVDLGELVREGATIIDVRTKSEYAGGHIRGS
                     VNIPLDKLVANMNKLKKNKAIITCCASGARSASAKGILTSHGFTNVHNGGSWFSLDRK
                     IS"
     gene            1285..1908
                     /locus_tag="VI413_10960"
     CDS             1285..1908
                     /locus_tag="VI413_10960"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY6915186.1"
                     /translation="MITEAINERYTSLSETTCCLSCGGAINHAKPQPGETCVDLGSGR
                     GNDVIRLAEEVGVTGFVFGIDISEGMIAKANANLEKFEVRNSKILKAELESLPLRNDS
                     VNLVISNCTINHATDKPAVWNEIYRILKKDGRFVVSDIYATQPIAEEYKNDPAAVAEC
                     WAGSVTRAEYLTMLEDAGFIDIKIFEESEPYAKGQAEVASFTISGRK"
BASE COUNT          648 a          341 c          460 g          624 t
ORIGIN      
        1 accggcaata tcgtttgttc cggccagaat taccaccact ttgggttgca gcgaaattac
       61 atcctgacga aagcgaacca gcatttgagg agtggtttgt ccgctgatac cacggcatat
      121 ataaggattt ttagagaaaa agtcgggccg tgtctctttc caaccttgtg tgatggaatt
      181 tcctataaaa accacccgtt tttcgccttt ggatggtaac cctaccaatg cattttcggc
      241 acggtaacgg tttagattag gccaatcctg cgcgtttgaa aaaaaggaag taagcaaaaa
      301 tgcacacata aagaatagtt ttgtagcttt tcttgaattc ataataatca gattttaaat
      361 gaacatcaaa gttaaagaaa actatttgta ttcagacaat aaaatagttt gaattttact
      421 tttctcgttg ccttccagct tcgaaatgca gttttgaatt cgcttacgaa atttccagca
      481 tgtcatttgg ttcaaaccca gttgatcgga ataattgtat gtagaaaaat cacttcccag
      541 cacgcaaacg ttataggcaa tgtaaaatgc cttgttgatg gggaatttta tgttgtggaa
      601 aatggtattg gccgctgccg attcttcttt tttgcaacga gtacagcgcc gggatgaagg
      661 cgtttttcct tcgcaaaagt tggtgtgccc gcagttgcgg catgcaaaac cgtctttcca
      721 tttaatgtcg gcgattaatt tcagtacttt ttcgctgtcg ttaaaaagtt cgttggcttt
      781 ctcaattgag atatcttctt taaatagcat gtatatcagt gtgttttgtc tttttgttga
      841 ttaattcgtt gacaaagata gaaaatattt tagtgataac aaaataattt attggtgata
      901 ctattgtaat ttaaaagaat gtgtttatct ttgcgacata aaactgaatt aggtagaaaa
      961 aatatgattg aaacattaaa aaagttattt ggagttgctc caaaagtaga tttgggagag
     1021 ttggtaaggg aaggcgcaac cattattgac gttcgtacga aaagcgaata tgccggtggc
     1081 catatcagag gttcggtaaa tattccgctg gacaaattgg ttgccaatat gaataagcta
     1141 aaaaagaaca aggctattat tacttgttgt gcttcgggtg cacgcagcgc ttcggccaaa
     1201 ggaattctga cttcgcacgg ttttacaaac gttcacaatg gaggcagttg gtttagtctg
     1261 gatcgtaaaa ttagttgatt taaaatgata acggaagcaa ttaacgaacg atatacaagc
     1321 ctgagcgaaa caacttgttg cttgtcgtgc ggtggtgcca ttaatcatgc aaagcctcaa
     1381 ccgggagaaa cttgtgttga tttagggagt ggtcgtggaa acgatgtgat acgattggcc
     1441 gaggaggttg gcgtgacagg ttttgttttt gggattgata tttcggaagg aatgattgcc
     1501 aaagcgaatg caaacctcga aaagtttgag gtgagaaatt ctaaaatact gaaagctgaa
     1561 cttgaaagtt tacccttgcg aaacgatagt gtgaatctgg taatatccaa ctgtactatc
     1621 aatcacgcca ccgataaacc tgccgtgtgg aatgaaattt atcgtatact aaaaaaagac
     1681 ggacgttttg ttgtcagtga tatttatgcc actcaaccga tagctgaaga atacaaaaat
     1741 gatcctgcag cagtggccga atgttgggcc ggttcagtaa cacgggccga gtatctgact
     1801 atgttggaag atgcaggatt catcgatata aagatatttg aagaatcgga gccttacgca
     1861 aaagggcagg cagaagttgc cagttttact atttcaggaa gaaaatgatt caaaccacaa
     1921 taggtacaat agaattatta aactgttgtt tctgttgtgg ttaatgataa aaggtttaat
     1981 tttaaaccgt tattcacaac taaaataatt atttatgaaa agtgtcgtga aaaaaagttg
     2041 ctgttcaggc aacaaagaat cgaaagttgc aca
//
LOCUS       DATDNM010000644         2561 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_825875, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000644 DATDNM010000000
VERSION     DATDNM010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2561
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_825875"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..379
                     /locus_tag="VI413_10965"
     CDS             <1..379
                     /locus_tag="VI413_10965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY6915187.1"
                     /translation="LAEFKGKPFQERFKGKLEFDKVLTFDKATDVYFSGVNHDEQQVP
                     HVKVNNPESFAAINIKQYGAPCQFFCSSEVYELHTDKNGHQELRIHAENCMHCKTCDI
                     KTPGDGITWSVPNGGNGPDFQNM"
     gene            406..2349
                     /locus_tag="VI413_10970"
     CDS             406..2349
                     /locus_tag="VI413_10970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEY6915188.1"
                     /translation="MALTIISLIKQVPLATEMRMGEDGLMDRTKAKSIINIDCQFGLE
                     AGLQLKKQYPDARLIACSMGPGSFEVALRTAISMGYDDAYLLSDRKLGGSDTYATGLA
                     ISTMLKHLGFSKDSKEPFIILAGRQTSDGDTAHVPSQVAESLGIPQATFVETVKADGE
                     GNVIAKRIIEGGYQMMKLPMPCTISLTPTGIPPRKPSLTGAIKARNAKITVFGIDDIG
                     LGTEKIGLSGSPTIVANVVNIVSERAPIIMSQGHNETTLVDSLISNYKKGANVLEKKE
                     TAEKKSSEKPEFPLYDNRNGAKGILTWAEIANGKITRPSIELLTPARHLADQLGEDTK
                     IMTLLIGKNVKDLAQVLFEHGSDEVIVVEDDKLEEYLVLPFSSIFEQVIKERNPEIAL
                     FAATTSGRELAPRIGMKTGSGVTADCTGLEIGEYVNRKDKVINKPILHSRRPTYGESK
                     LATILGFVYPQISTARAGTFEVPAKVEGRTGVVSTFKPELTEDEFKVEILQTVRGEGS
                     SVNLFDADIIISGGRGTTNDGLELIKKLAEALKEKGVKAEWACSRVVVDEGFSEYARQ
                     VGQTGKTVRPKVYVGVGISGAIQHIAGMKESEKIIAIDHNPKASIFHFADFGIVGEYT
                     DILPELIERVKGGFTFGIEPAKN"
BASE COUNT          784 a          547 c          589 g          641 t
ORIGIN      
        1 attggccgaa ttcaaaggca aaccattcca ggagagattc aaaggcaagt tggaatttga
       61 caaagtgttg acattcgata aagctaccga tgtatatttc tcaggagtga accacgacga
      121 acaacaggtt cctcacgtga aagtcaataa tcctgaatca tttgcagcca ttaatatcaa
      181 acaatacggt gctccgtgcc agttcttctg ttcgtcggaa gtgtacgaac tgcacaccga
      241 caaaaacggg catcaggagt tacgcattca tgccgaaaac tgcatgcatt gtaaaacctg
      301 cgatattaaa acaccgggtg acggaattac ctggagtgtt ccaaacggtg gcaatggccc
      361 tgattttcaa aacatgtgat taattcataa ttcataatta aagaaatggc tctaacaatt
      421 ataagtttaa taaaacaagt acccctcgcc accgaaatgc gcatgggcga agatggattg
      481 atggacagaa caaaagctaa gtcgattatc aatatcgact gccagtttgg tcttgaagcc
      541 ggtttacaac tcaaaaaaca atatcccgat gcacgtctaa ttgcttgctc catgggaccc
      601 ggatctttcg aagtagcact gcgcacagct atatctatgg gttacgacga tgcgtacctc
      661 ctctccgacc gtaaactcgg tggtagtgat acgtacgcca cagggttggc tatctctacc
      721 atgctgaaac atttgggttt cagcaaagat tcgaaagaac cgtttatcat tctggccggc
      781 cgacaaacca gcgatggaga tactgctcac gtaccttcgc aagttgctga aagcttaggc
      841 attccgcagg caacattcgt agaaacagta aaagccgatg gcgagggaaa tgtaattgcc
      901 aaacgcatta tcgaaggtgg ttaccaaatg atgaaactgc ctatgccctg cactatttca
      961 ttgacaccaa ccggcattcc accgcgcaaa ccatcgctaa cgggagcaat aaaagcacgt
     1021 aatgccaaga ttactgtgtt tggcatcgac gatattggat tgggaactga gaaaatcgga
     1081 cttagcggat cgccaacaat tgtagctaat gtggtgaata tcgtgagcga aagggctccg
     1141 attatcatgt cacaaggtca taatgaaaca acgctggttg atagtcttat ttccaactac
     1201 aaaaaaggcg caaacgtact cgagaaaaaa gaaacggctg aaaagaaaag ctcggagaaa
     1261 cccgaatttc ctctttacga taaccgcaac ggagctaaag gcattttgac ctgggccgaa
     1321 attgccaatg gtaaaattac ccgtccgtcc atagaattgc ttacgcctgc gcgccatttg
     1381 gcagatcaat tgggtgaaga tactaaaatc atgaccctgc tgattggtaa aaatgtaaaa
     1441 gacctggctc aggtactgtt cgaacatgga tccgacgaag taattgtggt ggaagacgac
     1501 aaactggaag aatatctggt acttcctttt tcatccatct ttgaacaggt aatcaaagaa
     1561 cgcaatcctg aaattgctct ttttgcagct accacttccg gccgggaact tgctccacgc
     1621 atcgggatga aaaccggcag tggtgttact gccgactgta ccggactgga aataggcgaa
     1681 tacgtgaacc ggaaagataa agtaatcaac aaaccgattc ttcactcacg ccgcccaaca
     1741 tatggcgaaa gtaaactggc tacgattctg ggattcgttt atccgcaaat ttcaactgct
     1801 cgtgcgggaa ccttcgaagt acctgccaag gtagaaggac gtacaggcgt tgtatctacc
     1861 ttcaagcctg agcttaccga agacgaattt aaagtggaaa ttctgcaaac ggtacgtggt
     1921 gaaggcagct ctgtaaacct gttcgatgct gatattatca tttcgggtgg tagaggaacc
     1981 acaaatgacg gtttggaatt aataaaaaaa ctggccgaag cgctcaaaga aaaaggtgtg
     2041 aaagccgaat gggcttgcag ccgcgtggtg gttgacgaag gtttctcgga atatgcacgc
     2101 caggttgggc aaacgggtaa aacagttcgt ccgaaagtgt acgtaggcgt tggtatttca
     2161 ggagcaatcc agcatattgc agggatgaag gaatctgaaa aaattattgc catagaccat
     2221 aaccccaaag catcgatttt ccattttgcc gatttcggta ttgttggtga atataccgat
     2281 attctacccg aattaataga acgtgtaaaa ggtggattta cctttggaat agagcccgct
     2341 aagaattaag ggtttaagcc ttgaatagta tctattcaaa acgaaaaatg gagttgtacg
     2401 atttgtgcaa ctccattttc tatttattca gttcatatta tttcgcctca gtcgcaactt
     2461 cctttttggt atatccggct gcgcggtcaa taattttgcg ggcaattttg aattcgccgt
     2521 atagtgtcgg attcaggatt ttaaattgca gcatcaacgg g
//
LOCUS       DATDNM010000645         3011 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1573314, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000645 DATDNM010000000
VERSION     DATDNM010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1573314"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..699
                     /locus_tag="VI413_10975"
     CDS             <1..699
                     /locus_tag="VI413_10975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEY6915189.1"
                     /translation="LPAECGVNRALIRSTTEAGKVTITATSEGLKPTTLSFSTVPFMT
                     ENGLSLILPSDSLPSNLMRGETPSTPSFKVTRKAIDVVSATAGANADKLALSYDDNEL
                     SEWTNDGKISTGWVTYQFAKPAIVSEVCLKLSGWRSRSYPIEILVDKKVVWKGETTQS
                     LGYVNIPVTPAKGKSLTIRLTGSGSEKDAFQNMIEVNGQKELDGFKDPKNASTKGQLR
                     IVEVEIYEKSKIQD"
     gene            717..1460
                     /locus_tag="VI413_10980"
     CDS             717..1460
                     /locus_tag="VI413_10980"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan acetylesterase"
                     /protein_id="HEY6915190.1"
                     /translation="MKKIKPLLILIILAVTVLSFKSSDKVNIWMIGDSTMANKKPDAA
                     PETGWGMVFNEFVKTNVIVHNHAVNGRSSKSFLSEGRWRAIYDSIQPGDYVIIQFGHN
                     DEKDEEKLHTDPFTTYKQLLKKYIDETREKGANPIICSSIVRRHFDANGNLKDTHGAY
                     INAAREIALETNTPYIDMEAKTRKLVSKLGPEKSKSLYLFTKAGEYPNRPKGVQDSTH
                     LNGVGARKFAGLFAKEVKRQKLPLRGLLK"
     gene            1487..2857
                     /locus_tag="VI413_10985"
     CDS             1487..2857
                     /locus_tag="VI413_10985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015532398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 28 protein"
                     /protein_id="HEY6915191.1"
                     /translation="MKNTGISLLFVLVVFLCSFTNDKNSVRISTIKVNAPFEMPDIKV
                     PDFSKCKTFPIIEFGAVQGDKAQNSRAIASAISAANEAGGGIVVIPAGEWLTGKVHFK
                     SNVNLHLSKGAVLLFDDDPNDYLPAVNTSWEGMECMNYSPLIYAWQCKNIAITGEGTI
                     TAKMNLWTSWAGRPRPHMESLKRLYNMSYQNVPTEERMMVNDTAHLRPHLIQFNRCEN
                     IRFECFSIVNSPFWTIHMYLSKNILLRKLNVYAHGHNNDGFDPEMSQNILVENCRFDQ
                     GDDAIAIKSGRNQEGWRIQVPTKNLVIRNCTVKNGHQLIAIGSELSGGIENVYVHDCV
                     VNKGAKMFHVVFIKTNERMGGYVNNIYVKNIKAGKMDLGILGIETDVLYQWKDLVPTY
                     VRKLTPIKNIYLGNIKATNVKFESRILGQKELPVENIFLKSVEADTIRDKKQIHENVI
                     NFKREK"
BASE COUNT          969 a          561 c          681 g          800 t
ORIGIN      
        1 cttcctgccg aatgtggagt gaaccgtgca ttaatccgta gcaccaccga agccggaaag
       61 gtaacaataa cggctacttc cgaaggactc aagccgacaa ccctatcatt tagtactgtg
      121 ccttttatga ccgaaaatgg actcagcctg atattaccat cggatagttt gccatcgaat
      181 ttgatgcgcg gcgaaacacc ttcgactccg tcgtttaaag ttacccgcaa ggccattgat
      241 gttgtttcag ctacagccgg agccaatgcc gataaacttg ctttaagcta cgacgacaac
      301 gaactgagtg aatggaccaa cgatggcaaa atctcaactg gttgggttac ttatcagttc
      361 gccaaaccgg ctattgtttc agaagtttgt ctgaaattaa gcggatggag aagccgtagc
      421 tatccaatcg aaattctggt tgataaaaag gttgtatgga aaggcgaaac cactcagagt
      481 ctgggctatg tgaatatacc ggtaactcct gcaaaaggaa aatcgctcac cattcgcctg
      541 acaggttcag gaagcgaaaa ggacgcattc cagaatatga ttgaagtaaa cggacaaaag
      601 gaactggatg gtttcaaaga cccgaaaaat gcaagtacta aggggcagct tcgcattgtg
      661 gaagtggaaa tttacgagaa aagtaaaata caagattaat tttttatatg ctggaaatga
      721 aaaagattaa accacttttg atactgataa ttttagctgt cacagtttta tcattcaaaa
      781 gttcagataa agtgaatata tggatgattg gcgattcaac catggcaaat aaaaagccgg
      841 atgcagctcc cgaaaccggt tggggaatgg tatttaacga atttgtaaag acgaatgtaa
      901 tcgttcataa ccacgccgta aatggccgca gttccaaaag ttttttgagc gaaggccgtt
      961 ggagagctat ttatgatagt atccaaccgg gcgattatgt gattatccag tttggacaca
     1021 atgatgaaaa ggacgaagaa aaattgcata cagatccttt caccacctac aaacaattgt
     1081 tgaaaaaata tattgatgaa acacgggaaa aaggtgcgaa tccgattatt tgttcttcca
     1141 ttgtccgacg tcatttcgat gccaacggaa acctgaaaga tacgcatgga gcatacatca
     1201 atgcagcccg ggaaattgcg cttgaaacca atacgcctta cattgatatg gaagcaaaaa
     1261 cccgtaaact tgtttcgaaa ctgggtccgg aaaaatcaaa atcgctgtat ttgtttacta
     1321 aagcgggaga atatccaaac cgccccaaag gagttcagga ttccacgcac ttaaatggag
     1381 taggggcacg caaatttgcc ggattatttg caaaagaagt gaaaaggcaa aagttaccgt
     1441 tgagaggact tttgaagtaa aattatattg tttagtaatt ggaaatatga aaaatacagg
     1501 tatatctctt ttgttcgttt tggtagtctt tttatgctcc tttacgaatg acaaaaactc
     1561 cgttcggata tcgacgatta aagtcaacgc tccgtttgaa atgccggaca tcaaagtccc
     1621 ggatttcagc aagtgtaaaa cgttcccgat tattgaattc ggagccgtgc aaggcgataa
     1681 agcccaaaat tcacgggcaa ttgccagcgc catttcggct gctaacgaag cgggaggcgg
     1741 aattgtagtg attcctgcag gtgaatggct gacgggtaaa gtgcatttca aaagtaatgt
     1801 aaacctgcat ctaagcaaag gagctgtttt gcttttcgac gatgatccga acgactattt
     1861 gccggctgta aataccagtt gggaaggtat ggagtgcatg aattattcgc cgctcattta
     1921 tgcctggcag tgtaaaaata ttgctattac cggtgaagga actatcacag ccaaaatgaa
     1981 tttgtggact tcgtgggcag ggcgcccccg tccgcacatg gaaagtctga aacgccttta
     2041 caatatgtct tatcaaaatg tacctaccga agagcgcatg atggtgaatg atacggctca
     2101 tctgcgtccg catttgattc agttcaaccg ctgtgagaac attcgtttcg aatgtttctc
     2161 cattgtcaat agcccgttct ggactatcca catgtatttg tcgaaaaata ttttgcttcg
     2221 taaattgaat gtatatgctc atggtcataa caacgatgga ttcgatccgg aaatgagtca
     2281 gaatattctg gttgaaaatt gcagattcga tcagggtgac gatgctattg ccattaagtc
     2341 gggccgtaac caagaaggat ggcgaattca ggtgcctacc aaaaatcttg tgattcgtaa
     2401 ctgtactgtg aagaacggac atcagttaat cgcgattgga agtgaactgt cgggtggtat
     2461 cgaaaatgtg tatgtgcatg actgcgttgt gaataagggc gcaaaaatgt ttcatgtcgt
     2521 gtttatcaag acaaatgaac gtatgggcgg ctacgtgaac aatatctacg taaagaatat
     2581 caaagcaggt aaaatggatt tgggtatttt gggcatcgaa acggatgtgc tttatcaatg
     2641 gaaagatctg gtaccaactt atgtacgcaa actgacacct ataaaaaaca tatatctcgg
     2701 aaatataaaa gctacaaatg taaagttcga atccagaatt ttagggcaaa aagaattgcc
     2761 ggttgagaat atctttctga aaagtgtgga ggcagatacc attcgggata agaaacaaat
     2821 ccatgaaaat gtgattaatt tcaaaaggga aaaataaata gattaatttg taatagaagt
     2881 actatacatt gttttaaatt catgaaaacc acgcgatacg ttacgctcct cattgttgct
     2941 ttatttcctg taagtttagt cttaaatgca caaattggca agcgttttcc gtccgaacgg
     3001 aaagaaatta a
//
LOCUS       DATDNM010000646         3417 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_506122, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000646 DATDNM010000000
VERSION     DATDNM010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506122"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..200)
                     /locus_tag="VI413_10990"
     CDS             complement(<1..200)
                     /locus_tag="VI413_10990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915192.1"
                     /translation="MKLNDTDIRLNASAEKLNDTDIRWNATAEKLNASAVKLNDADIR
                     WNATAEKLNDADIRLNATAEKL"
     gene            728..3349
                     /locus_tag="VI413_10995"
     CDS             728..3349
                     /locus_tag="VI413_10995"
                     /inference="COORDINATES: protein motif:HMM:NF021445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol lysyltransferase
                     domain-containing protein"
                     /protein_id="HEY6915193.1"
                     /translation="MRNTQIANIKPLFGKNKFSFIAENKKMIIQFIFTIFFIAVAIWF
                     VKHEGAELGKVKNTLVTARGLWVLTGVLLTVAYLWLQGLMYSCAFRATESRVSVKDAT
                     ILFIKRNFISVFVPAGGVTSYMFFTDSLVSKGISKSKIIFASSVYGFVGTLSLVMVAI
                     PVFIYSIFEGTISSGEWYALGVVLILIVALFLFYHSIVRKTIVYKLLTKYFPQAEVFL
                     NDIQYNKIDLKNLLLSFMVSLLIDLCGVAFLYVAMLALGYPPSLYAALMGYLVSVIFM
                     IASPFLRGLGAIEVSMTFILIRLGYGNIEAIALTFLYRFFEFWLPLFIGVLTFLSKMS
                     KLLMRVLPAFFLMALGIINIISVITPAIPERLERLADFLPIELIHASNYLVLTVGFFL
                     LVTATFMLKGLRSAWLFAIALTVLSFVGHITKAIDYEEASAALFVLIVLMVTHKEYYI
                     KNNPKLRYVGLQTSLLLTFATILYGVAGFYFLDKKHFDIDFSFLQSLRFALQNFFLIQ
                     SSELVPADQFARDFLYSINVSGFFSIVFLIYTLVRSYVPGKNVTDEELSLARELLKSY
                     GNSSLDYFKVYGDKLIFFSESKKSFLSYGLSGNYAVVLEDPVAANNDEKRKCIVEFDK
                     YCSETGLMSLFFRVPEETLGLYRELRKKELFLGQESVVDVSTFSLEGRSKKTLRNAVS
                     KVTEMGYKVTIHVPPVKDGVLQKIKLVSDEWLKESNRTELKFSQGRFVWEELKQQTIL
                     TVESKEEKVVAFLNIIPDYAKAEGTYDLMRKTKDAPNGVMDFILIELFNYLKSQGFIY
                     VNLGFAPFSGITDPHKFTEKSMKFAYEKIKALAHHKGLREYKEKFEPVWYNKYLIYQN
                     DYDLLKAPAVLSKVIKV"
BASE COUNT          931 a          604 c          723 g         1159 t
ORIGIN      
        1 ttcaatttct ctgcagttgc gttcaagcga atgtcagcgt cgttcaattt ctctgcagtt
       61 gcgttccaac gaatgtcagc gtcgttcaat tttactgcag atgcgttcaa tttctctgca
      121 gttgcgttcc aacgaatgtc agtgtcattc aatttctctg cagatgcgtt caagcgaatg
      181 tcagtgtcat tcaatttcac ggcagaagta tttgctttgg taatcagcac aacctaattt
      241 cacattaagt tgggctgatt catgtctaaa ctaaaaactg tattgcgctt atttgattta
      301 tataggttga agacttttga taaatgcacc ggatagtctt caagatcttc cgcaatgttc
      361 tttatttttt ccaactttat tttttgttta taactaattt ctttttcgat gtaaatttca
      421 acctcagggt tgggcattgg ctttttatac tgatttaatc agggggtact tttgtctgat
      481 ttatagataa ttatcttatg atatgtaaac ttttttttga taaagaatgt ttattattga
      541 gtggcattta gatagagcca gatactataa aaaacgagga gaaccgaaaa taaggaacca
      601 ttattcccca ttttttacga aaagctgtag gtctgaaagg gactaattgc aatggaagtt
      661 attcttttct ataaatacct cttccggagt tcttttttcg cgtctcaatt attttaaaag
      721 ccagcgtatg agaaacacac agattgccaa tataaagccg ctgtttggca aaaataagtt
      781 ctcatttatt gccgaaaata aaaagatgat tattcagttt atttttacca tcttttttat
      841 tgccgtggcc atatggtttg tcaaacatga aggagctgaa cttggaaaag taaaaaatac
      901 cctggttaca gcgcggggcc tatgggtatt gaccggtgtt ctgttaactg tagcttatct
      961 ctggctgcaa ggtttaatgt attcctgcgc ctttagggcc actgaaagca gagtgtcggt
     1021 caaggatgcc accatccttt ttataaaacg aaatttcata agcgttttcg ttcccgccgg
     1081 cggggttact tcctacatgt tttttaccga ttcgttggtc agtaagggca ttagcaaatc
     1141 gaaaatcatt tttgcctctt ctgtttatgg tttcgttggg acattatctt tggtaatggt
     1201 ggcaattccg gtcttcatat attcaatttt tgaaggcacc atcagttccg gcgaatggta
     1261 tgcattagga gtggtgctta ttttaattgt tgctttattc ttattctatc attcgatagt
     1321 caggaaaacc atcgtctata agttgcttac aaaatatttc ccgcaggcag aagtgttcct
     1381 gaacgatatc cagtataaca aaatcgacct gaagaatcta ttgcttagct ttatggtatc
     1441 cctgttaata gacctttgtg gggtagcttt cttatatgtt gccatgttgg cgctgggtta
     1501 tcctccatcg ctctatgccg cattaatggg atatctcgtt tctgtgattt tcatgattgc
     1561 ctcgccattc ttaaggggac tcggagctat tgaggtttcg atgaccttta ttctgattcg
     1621 cctgggttac gggaacatag aggctatagc cctgactttt ttatatcgtt tttttgaatt
     1681 ctggttgccg ttgtttatcg gggtgctcac attcctgtcg aaaatgagca aattgctgat
     1741 gcgggtttta ccggcatttt tcctgatggc tctgggaatt atcaatatca tttcggtaat
     1801 aacgcctgct attcccgaac gattggaacg attggctgat tttctgccca ttgagctaat
     1861 ccatgcttcc aattacctgg tacttactgt gggcttcttt ttgctagtta cggccacctt
     1921 tatgctgaaa ggcttacggt cggcctggtt gtttgcaatt gctctgactg ttttgtcgtt
     1981 tgtagggcac atcaccaaag ccatagatta cgaagaggcc agtgctgctt tgtttgtgct
     2041 catcgtttta atggttaccc ataaggaata ttacatcaag aacaatccaa aattacgata
     2101 tgtaggattg cagacttctc ttttactcac ttttgcaaca attttgtatg gagtagcggg
     2161 tttttatttt ctggataaaa agcattttga tattgatttt agtttcctgc aatcactgcg
     2221 gtttgcctta cagaattttt ttctgataca aagttcggaa ttggtgccgg ccgaccaatt
     2281 tgcgagggat tttctttatt caattaatgt cagcggtttt ttctcaattg tttttttgat
     2341 atacaccttg gtgcgatcgt atgttcccgg aaagaatgtt acggatgaag aactatcttt
     2401 agccagggaa ttgctgaaat catacggaaa ttcgtcactc gattatttca aggtttatgg
     2461 cgacaagttg attttctttt cggaaagcaa aaaatcattt ctgtcttatg gattgtcggg
     2521 aaattatgcc gtagtactcg aagatccggt tgctgcgaat aacgatgaaa aaaggaaatg
     2581 cattgttgaa tttgacaagt attgtagtga aacgggactc atgagtcttt tctttcgcgt
     2641 tccggaagaa acgctcggtc tttatcgtga gctcaggaag aaggaattat ttcttgggca
     2701 agaaagtgtg gtggatgttt ccacattcag cctggaaggg agaagcaaaa aaacattacg
     2761 aaatgccgta tccaaagtta ctgaaatggg gtacaaagta accattcatg ttcctcccgt
     2821 gaaagacggg gtacttcaaa aaattaaact tgtcagcgat gaatggctga aagaaagcaa
     2881 ccggactgaa ctgaaatttt ctcaaggtag gtttgtttgg gaagagctaa agcaacaaac
     2941 gattttgaca gtggaatcga aggaagaaaa agttgttgcc ttcctgaata ttatccctga
     3001 ttatgcaaaa gcggaaggaa cttatgattt gatgagaaag acaaaggatg cgcctaacgg
     3061 agtaatggat tttattttaa tagaattgtt caactacctg aaatctcagg gattcatata
     3121 tgtaaatctt ggattcgctc cttttagtgg catcaccgat ccacataagt ttaccgaaaa
     3181 gtcgatgaaa tttgcttatg agaaaattaa ggccttagca caccataaag gcctgcgcga
     3241 atacaaggaa aagttcgaac ctgtgtggta taacaaatat ctgatttatc agaatgacta
     3301 tgatttgttg aaagcgccgg ctgttttgtc taaagtaatt aaagtgtaaa agcatatgga
     3361 aaagaaaatt tatatattat tgaccggact gttgattttt gggttaagcg cacatgc
//
LOCUS       DATDNM010000647         3601 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_78144, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000647 DATDNM010000000
VERSION     DATDNM010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3601
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78144"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VI413_11000"
     CDS             complement(<1..806)
                     /locus_tag="VI413_11000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915194.1"
                     /translation="MPDIINYIIRFLLGEDLPAKTVAQVGYTADPEKFHKYKLVILPS
                     PFFSDEVYGTAASIPNIPLQIWEEAPILFGNPIAEQVNNTLVLHADLIASTYFLISRY
                     EEMVQADKRDVHGRFPGKESVPYRAGFIDSPLVDEYGKLLRTQLRGTGCKVPEPPQKI
                     RKIYLTHDVDQLSHYRSLRGFMGGLLRGIQRPKEGNKAIKSYFGGLKNDPWYTLPWLF
                     KLDNSVRQVLGADRCQPIAFIKVGGGKRKEDKPFVTHHIQDFQTLINLCK"
     gene            complement(817..1029)
                     /locus_tag="VI413_11005"
     CDS             complement(817..1029)
                     /locus_tag="VI413_11005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915195.1"
                     /translation="MTVPPKLKPVLYGIGVFIVFTTLMVILKLITHRVPSDAEYFGLF
                     TNQDLFLGVVVAVVLTFSHERKKKLK"
     gene            1555..2412
                     /locus_tag="VI413_11010"
     CDS             1555..2412
                     /locus_tag="VI413_11010"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007559817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEY6915196.1"
                     /translation="MKKIIASSAILLLAVGFNGYAQQVTQAAAPKVTITSSEKTTNSQ
                     WQGKRVAYLGDSMTDKRKVGTACVYWEYLNELLGIKPSVYGISGNQWDGIYRQALKLH
                     EEKGTDVDAILIFAGTNDYNHSIPMGEFFSETTKETNHNGNMVTRKYRTPIMNDSTFC
                     GRINKVMSYLKNNYPRQQIIIMTPIHRGFAQFSDKNVQPDENYSNALGLYIDSYIAAL
                     KQAASYWAVPLIDLYSASGLFPLADAQSQYFNNKETDRLHPNALGDYRLAKTIQYQLL
                     ALPSTFVLK"
     gene            3331..3564
                     /locus_tag="VI413_11015"
     CDS             3331..3564
                     /locus_tag="VI413_11015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915197.1"
                     /translation="MKRRKWPVSKSEWFTFEVAKPQKASDEYRSRGGFAVRNVSAKTQ
                     SLAESETIPIAGSPEGRNDNAQNFIGMHLHWKQ"
BASE COUNT         1128 a          646 c          737 g         1090 t
ORIGIN      
        1 tttttgcaaa gattgataag tgtttgaaaa tcctgaatgt gatgtgttac aaaaggtttg
       61 tcttctttcc tttttccacc acccacttta ataaaagcga taggctgaca acggtctgca
      121 cccagcactt gtcttacaga attatccagt ttaaataacc aaggcaacgt gtaccatgga
      181 tcatttttta atcctccgaa ataacttttt attgccttgt ttccttcttt cggacgttga
      241 atgcctcgca aaagcccgcc cataaaccct ctcaggctac ggtaatgcga taactggtct
      301 acatcgtgtg tcaggtatat ttttcgaatt ttttgaggtg gttcgggaac tttacagccg
      361 gttccccgaa gctgtgttct cagtaatttg ccatattcat ccaccagcgg tgaatctata
      421 aatccggcgc ggtaaggtac agactccttc cccggaaacc ggccatgtac atctctttta
      481 tctgcctgta ccatttcctc gtatctgcta ataagaaaat aggtacttgc aatcaggtcg
      541 gcatgcaata caagtgtgtt attcacttgc tctgcaatcg ggttaccaaa caatatcgga
      601 gcttcctccc atatttgtaa tggtatattg ggtattgagg ctgctgttcc gtaaacctca
      661 tccgagaaaa aaggcgaagg aagtataacc agtttgtatt tgtggaactt ttcaggatca
      721 gccgtgtagc caacctgtgc cactgttttg gcgggtaaat cctcacccag tagaaaacga
      781 attatataat tgataatatc aggcatctat cagtctttat ttcagtttct tttttcgctc
      841 atgcgaaaag gtcaatacta cagctacaac aactcccaaa aataaatcct gatttgtaaa
      901 tagcccaaaa tactcagcat cggaaggaac ccggtgtgtt atcaatttta atattaccat
      961 aagggtagta aaaacgataa agacgcctat tccgtataat acgggtttta attttggagg
     1021 tacagtcata aatttgtaat ttcttgtttg ttatctattt tttcgttttg tcgcataata
     1081 aatgaagtgg aatccgaatt tgcatcttca tattacattc acgttacgta cgaaacgaac
     1141 tgccaaaagt actcaataaa ttgaaattct atttgtgtaa gttgaaaaaa tatggctcaa
     1201 caattattaa ttaactgaat gccagttgta aacggtctgc gtaatctagt gaagttctca
     1261 actgccaggg tctaaactgt gcgtttatat aatgtaatat atggttgcac cggtgatgat
     1321 aggtagatgg cctttgatga atttctgact ttgacggcaa gtgtaatcaa agaacttttg
     1381 catctgatta tagctattgg gatattaaac tactgattat gtattatttc cctgattgta
     1441 gtaacgttca ggttaaatac aaggagtatg atctgctgat aaatgctttg acagaaaaat
     1501 ggaatttttg aaaataaata tttaattttg aagtttgaaa ataattattc ccatatgaaa
     1561 aaaataatag caagctcagc cattcttttg ttggcagtag gttttaatgg atatgcccag
     1621 caggtaactc aggcagctgc tcccaaagta acaataacgt caagtgaaaa aacaacaaat
     1681 tcgcagtggc agggtaagcg ggtggcttat ctgggcgatt cgatgacgga taagcgtaag
     1741 gttggtactg cctgtgtgta ctgggagtat ctcaacgaat tgcttgggat aaaaccttcg
     1801 gtatatggca tcagcggtaa tcagtgggat ggcatttaca ggcaagcgct aaaactgcat
     1861 gaagaaaaag gaacggacgt tgatgctatc ctgatttttg ccggcacaaa tgattacaac
     1921 cacagtattc caatgggtga gtttttcagt gaaacaacaa aagaaaccaa ccataacggt
     1981 aatatggtta cgcgtaagta ccgcactccg ataatgaatg actccacatt ttgcggacgt
     2041 attaataaag taatgtctta tctgaagaac aattatcccc ggcaacagat tattattatg
     2101 actcctatcc acaggggttt tgctcagttt agcgacaaaa atgtgcaacc tgacgaaaat
     2161 tatagtaatg cactgggatt gtatatcgat tcatatattg ctgcattgaa acaagcggca
     2221 tcttattggg ctgttccgtt aatcgatctt tattctgcaa gtgggttgtt tccactggcc
     2281 gatgcccaat cgcaatactt caataataaa gaaacggatc ggctgcatcc caatgcgttg
     2341 ggtgattacc ggttggctaa aaccattcaa taccagttgt tggcattacc ttcgactttt
     2401 gtgcttaaat aagccgctga cttctgctat caattctttg tctttcgttt ctaacgaagt
     2461 ttagaaagaa atttatggtg gataaaacta attatcattt gtagttatca acaattgtgt
     2521 ttgaggtgta ttgataatca gacaattgtc ctgttcataa cttttgttca taagttgttc
     2581 ataacaacgg tagaaaatag ttgtaaatcg catattcaat acattatatt tgcagcatga
     2641 gtttaggctc ataacatgaa acgatatgtt gaacggtctt tgaaatactg atacatcaaa
     2701 agaagtcaat agttaaatgt ctgaatccaa attcagaggt gaagttatat tttatgtaaa
     2761 gaacgcactg actattaagt caggttatct ccgtaattgt atgcgcaagc gtgcaatgag
     2821 atgcataaca aatgctgatg gtcttacggt ctctggcaaa aatataaatc cctgtgggtt
     2881 agactctcca aatataatta tggtacgttt gaataaaacg taaccctgtc tgtccctcag
     2941 acaggtaagc cgggtagtcg ggatgggaat ccatagacag taattcgtta cttatattca
     3001 tttccggcca caaaagtaaa agcagcaatg ttttgaacgt gtgacaaaaa gttccgggcg
     3061 atgcagtaca aaaaaattaa aagtcgagga gttcggagtt taacaatttg aatgagttta
     3121 taattgaacg aattttattt tttggtataa tgccaactga gtaaaagagt caagagtaaa
     3181 atgctgtata ggtgcatact taatagtaat gttgagattg tactgtaaag ataaagctgg
     3241 tgaaatcagc taatctgaat gctgaaaatt ggataccgta ccacagaatg aacggaaatc
     3301 cccataaaac gggacagaag tttgaacggt gtgaaacgga gaaaatggcc ggttagcaaa
     3361 agcgaatggt tcacattcga agtagcaaag ccgcaaaaag cgtcagatga ataccgttcg
     3421 cggggtggtt ttgcagtaag gaatgtgtct gcaaagacgc agtcattagc agaatccgaa
     3481 actatcccaa tagcgggtag tcctgaaggc cggaatgata acgctcagaa ttttatcgga
     3541 atgcatttgc attggaaaca atgaaaaagc atatacagaa tttcaattcc tattgactta
     3601 t
//
LOCUS       DATDNM010000648         2858 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1894213, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000648 DATDNM010000000
VERSION     DATDNM010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2858
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1894213"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..373)
                     /locus_tag="VI413_11020"
     CDS             complement(<1..373)
                     /locus_tag="VI413_11020"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443692.1"
                     /note="lipoyl/octanoyltransferase; catalyzes the transfer
                     of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto
                     lipoate-dependent enzymes like pyruvate dehydrogenase and
                     the glycine cleavage system H protein; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HEY6915198.1"
                     /translation="MNRTIQYIDWGLIEYNAAWQNQEKLFNNSIEKKTQELETDNYLV
                     FCEHPHVYTLGKSGDEHNMLLNYIQLQAKDASFVKTNRGGDITYHGPGQIVGYPIFDL
                     ANFGLGLKQYIYNIEEAIIKTL"
     gene            complement(370..1152)
                     /gene="mtgA"
                     /locus_tag="VI413_11025"
     CDS             complement(370..1152)
                     /gene="mtgA"
                     /locus_tag="VI413_11025"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: protein motif:HMM:TIGR02070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HEY6915199.1"
                     /translation="MKKQNNTSVNQAKKTKSKGFWGRFFKFCRNLFLLFIIISVGWVV
                     VDRFVPVFFTPLMIIRSVESVSKGEMPRNKKEWMPLDKISPNMAQAVVASEDNLFLTH
                     HGFSFNDMTKAFEHNLKGRRIRGGSTISQQTAKNVFLFPQRSYIRKGLEAYFTVLIEL
                     IWSKERIMEVYLNSIEMGDGVYGVEAAAQEHFGVHASQLSKSQAALIAACLPNPRRFD
                     AGNPTGYIQRRKSKIVSLMGKLGPLDFDNPTPVKKTRKHKRI"
     gene            complement(1212..1670)
                     /locus_tag="VI413_11030"
     CDS             complement(1212..1670)
                     /locus_tag="VI413_11030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005857662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915200.1"
                     /translation="MEEPILNEAKKLYNEPMHTCEHILNQTMVRMFGCSRSVNAHIER
                     KKSKCDYLLAKVPTDRQLIEITDKVNEIISSNLPVYVELMSREDAAEIVDLSKLPDDA
                     SEMLRIIRVGDYDACACIGQHVENTSELGRFKIISHDFENGRWRVRFKLV"
     gene            complement(1773..>2858)
                     /locus_tag="VI413_11035"
     CDS             complement(1773..>2858)
                     /locus_tag="VI413_11035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEY6915201.1"
                     /translation="HGDLSQAQRDTVMQKFRIRNIQLLVATDVAARGLDVSDLTHVIN
                     YNLPDDVEVYTHRSGRTGRANKKGIAVSIIHSKEKFKIKDIERMLKKSFVQEQIPNGL
                     EVCKKQLFFMIDRMQNVEVNDEQIEQYIPQIMKQLEDLSKEELLKRFVSLEFNRFLDY
                     YKDAEDLNYHEHHKERGERGERAERGERGGKSGGNRIRLKMNIGDREGIDPKRFLGII
                     NDVTGDKSISIGAIEVTNKFTFFDVFSDQVEKVVTAFAGETDYIVSEAKGSKSFEGGG
                     SRKPEYRSRGSYGGGESRSGGGYRGGDRGGDRGSRPSASAGGGDKPWRNREAGDRGSR
                     PSAGGGERRGSGGSGYKGGGGSSYKRR"
BASE COUNT          826 a          655 c          461 g          916 t
ORIGIN      
        1 aaagagtttt gattattgcc tcttctatat tatatatgta ttgcttcaaa ccaagtccga
       61 aattagctaa atcgaaaatc ggatatccga ctatttgccc cgggccatga taagtaatat
      121 ctcctccacg attcgttttt acaaaacttg catcttttgc ctgaagttga atgtagttta
      181 acaacatatt atgttcatcg ccacttttgc ctaaggtgta cacatgcggg tgttcacaaa
      241 aaacaagata attatctgtt tccaactctt gcgttttttt ttcaatagag ttgttgaaca
      301 atttttcctg attttgccag gcagcgttat attctatcag cccccaatct atatattgta
      361 tggtacgatt catattcttt tatgtttgcg ggttttcttt acaggagtgg gattatcgaa
      421 atctagcgga ccaagctttc ccattaaact aactatttta gattttcgac gttgaatata
      481 acctgttgga tttccagcat caaaacgacg aggattggga agacaagctg caataagtgc
      541 agcttgtgat tttgatagtt gagaagcatg aactccaaaa tgttcctgag ccgcagcttc
      601 aacgccataa acgccgtcac ccatttcaat ggaattcaaa tacacttcca taatccgctc
      661 tttcgaccaa attaattcta ttaataccgt aaaataggct tccagtcctt tacgaatata
      721 tgaacgttga ggaaatagaa aaacattttt agcagtttgt tgcgagattg tgctgccacc
      781 acgaattcta cgccctttca ggttgtgttc aaatgctttt gtcatatcat taaaagaaaa
      841 tccatggtgg gttaaaaata aattatcttc cgatgcgact acagcctgag ccatattggg
      901 tgaaattttg tccaatggca tccattcttt tttattcctg ggcatttctc cttttgaaac
      961 agattctaca gaacggataa tcattaatgg agtaaaaaaa acagggacaa agcggtcgac
     1021 aaccacccaa ccgacactaa ttataataaa cagtaaaaaa agatttcgac aaaatttaaa
     1081 aaatcgtccc cagaaaccct ttgatttagt ttttttagct tgattaactg aggtattatt
     1141 ttgttttttc attcaataaa ttctaacaat tacacgaatt tgaagattaa atactgatat
     1201 tttggcgcag attataccaa tttaaacctt acacgccaac gtccattttc aaagtcgtga
     1261 cttataattt tgaaacgtcc taactccgaa gtattttcaa catgttgccc aatacaagca
     1321 caagcatcat aatcaccaac acgaattatt cgaagcattt ctgaagcatc gtcaggtaac
     1381 tttgacaaat caacgatttc agcagcatct tccctactca taagctcaac ataaacaggc
     1441 aaattactac taattatttc atttacttta tcggtgattt caattaattg tctatcagtc
     1501 ggaactttgg ccaataaata atcacattta ctttttttcc tttcgatgtg tgcatttact
     1561 gaacggctac atccaaacat gcgaaccatc gtctgattca gaatgtgttc gcaggtgtgc
     1621 attggctcat tatataattt cttggcttcg ttgagtatcg gctcttccat tttctacaaa
     1681 tttggctgca aagataatca ttcagtttga aatctataaa aaacggataa tccatttctg
     1741 aattatccgt cttatcattt atattgcttt gcttatcgtc ttttgtatga agatccgcct
     1801 ccgcccttat agccagaacc accactacct ctacgctcac cgccacctgc tgacggacga
     1861 ctgcctctgt cacctgcttc acgattacgc caaggcttat caccaccgcc cgcacttgct
     1921 gaaggacgac tgccacgatc tccgcctctg tcgccaccac gataaccgcc acctgaacgt
     1981 gattcacctc caccgtaact tcctctcgaa cgatattccg gcttacgact gccaccacct
     2041 tcaaacgatt tacttccttt agcttccgaa acaatataat cagtttctcc ggcaaatgca
     2101 gtaaccactt tttcaacctg atcggagaat acatcgaaga aagtaaactt attcgttact
     2161 tcaatagctc caatactgat tgatttatcg ccagtcacat cgtttataat acccagaaag
     2221 cgtttcggat caattccttc gcgatcaccg atattcattt tcagacgaat gcggttacct
     2281 cctgatttac ctccgcgctc acccctttcg gcacgttcgc cacgctcacc acgttctttg
     2341 tgatgctcat gatagttcaa atcttcagca tctttgtagt aatccagaaa acggttgaat
     2401 tccaacgaaa cgaaacgttt caaaagttct tcttttgata gatcttccaa ttgtttcata
     2461 atctgcggaa tatattgttc aatctgctcg tcgttcactt ccacattttg catgcggtcg
     2521 atcataaaga atagttgttt tttacaaact tccaatccgt ttggaatttg ttcctgcaca
     2581 aagctctttt tgagcatgcg ctcaatatct ttgattttga atttttcttt ggaatgaata
     2641 atcgatacag caataccttt tttgttggca cgaccagtac gaccactacg gtgcgtatac
     2701 acctctacat catccggcaa attatagttt ataacgtgag tcaaatcgct tacatccaag
     2761 ccacgggcag ctacgtccgt agccaccagc aattggatat tgcggatacg gaatttttgc
     2821 ataactgtat cacgctgagc ctgagacaaa tctccatg
//
LOCUS       DATDNM010000649         2310 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_718593, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000649 DATDNM010000000
VERSION     DATDNM010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_718593"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..789
                     /locus_tag="VI413_11040"
     CDS             103..789
                     /locus_tag="VI413_11040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915202.1"
                     /translation="MNRREMNLSGTFQTLEEFLNDNLSSFDGNEPILGVIGELKIKNT
                     KIRSLNELQAKSTEADYAIKSQDEHILIDIAIKVSDGLKVIAASRKDTRLKIEAKVSR
                     WELGRMREGDMFIRLKQLYVAALPFVEDLLSLRVSKDEIDSLNIDESELAKSTPAIQN
                     VKAKTKQATAELRQTIADTNNLIRETLDPLMLEYKIKNPTLYGEFKMARKIIDRAAGQ
                     AKKEVVVETK"
     gene            complement(862..>2310)
                     /locus_tag="VI413_11045"
     CDS             complement(862..>2310)
                     /locus_tag="VI413_11045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEY6915203.1"
                     /translation="KRIIEGGYQMMQLPMPCTISLTPTGIPPRKPSLTGAIKARNAQI
                     TVFGIDDIGLGTEKIGLGGSPTIVANVVNIVSERAPIIMSEGHNETALVDSLISNFNK
                     GANVLEKKEAAEKKASEKPEFPFYDNRNGAKGILTWAEVANGKIVRPSIELLTPARHL
                     ADQLGEGTKIMTLLIGKNVKDQAQVLFEHGSDEVIVVENDKLEEYLVLPFSSIFAQVI
                     KERNPEICLFAATTSGRELAPRIGVKTGSGVTADCTGLEIGEYVNRKDKVINKPILHS
                     RRPTYGESKLATILGFVYPQISTSRAGTFEVPARVEGRTGVVSTFQPTLTDDEFKVEI
                     LKTVRGEGSSVNLFDADIIVSGGRGTTTDGLALIKKLAEALKEKGVKAEWACSRVVVD
                     EGFSEYARQVGQTGKTVRPKVYVGVGISGAIQHIAGMKESEKIIAIDHNPKASIFHFA
                     DFGIVGEYTDILPELIERVKGGFTFGIEPVKN"
BASE COUNT          657 a          494 c          501 g          658 t
ORIGIN      
        1 gtatttgagc tgttttcaat tgacgttaca aaaacataaa acaggtctgt caggcttgtt
       61 caatcataga ttttaattat aaacttaaaa attacattgt ttatgaaccg tagagaaatg
      121 aatttatcgg gaacgtttca aacattagaa gaattcctga acgacaattt gtcaagcttt
      181 gatggcaatg agccaattct gggagttatt ggtgaattga aaataaaaaa taccaaaata
      241 agaagtttaa atgaattgca ggcgaaaagc acggaagccg actacgccat taagagtcag
      301 gatgaacata tattaattga tattgctatt aaagtatcgg atggactgaa agttattgcg
      361 gcttcccgta aagacacccg cctgaaaata gaggccaaag tatcccgttg ggaattgggc
      421 cgtatgcgcg agggtgatat gtttataaga ctaaaacaac tttatgttgc ggcattgccg
      481 tttgtggagg atttgttgtc tttgagagtg tcgaaagatg aaattgattc attgaatatc
      541 gatgaaagtg aattggctaa aagcactcct gctattcaaa acgtaaaggc aaaaaccaaa
      601 caggcaacag cagagctcag gcaaacaatt gcggatacaa ataacttgat acgcgaaacg
      661 ctcgaccctc tgatgttgga atataagatt aaaaatccta cgctgtatgg tgaatttaaa
      721 atggcccgca aaattattga ccgcgccgcc ggacaagcca aaaaggaagt tgtggttgaa
      781 acgaaataat atcaactgaa taaatagaaa atggagttgt acaatttgta caactccatt
      841 ttctatttaa accatatcca ttcaattctt tacaggttct atcccaaagg taaatccgcc
      901 ttttacccgt tcgatcaatt cgggcagaat atcggtatat tcacctacga taccaaagtc
      961 ggcaaaatga aaaatcgatg ccttgggatt atgatcgatg gcgatgattt tttcggactc
     1021 tttcatgccg gcaatgtgct gaattgcacc tgaaatgccg acgcctacgt acactttcgg
     1081 acgaacggtt ttaccggttt gcccaacttg tcgtgcgtat tccgaaaaac cttcgtcaac
     1141 taccacgcga ctgcacgccc attcggcttt cacacctttt tctttcagtg cttcggccag
     1201 tttttttatt aatgctaagc cgtctgtagt ggttcctctg ccaccggaaa caataatatc
     1261 ggcatcgaac aggtttacag agctaccttc gccacgtact gtttttagaa tttccacttt
     1321 aaattcatca tcagtcaggg tgggctggaa tgtagataca actccggtgc gaccttccac
     1381 tctggcagga acttcgaaag tgcctgcacg ggaagtggaa atttgcggat aaacaaatcc
     1441 cagaatcgta gccagtttac tttcgccata tgtagggcgg cgggaatgta gaattggttt
     1501 attgataacc ttatctttgc ggttcacata ttcgccaatt tccagtccgg tacagtcggc
     1561 agttacgccg ctaccggttt tcacgcctat acgcggagca agctctcgtc cggaagtggt
     1621 ggctgcaaaa aggcaaattt ccggattacg ttccttgatt acctgcgcaa aaatagaaga
     1681 gaacggcagc accaggtatt cttccagttt gtcattttcc accacaatta cttcgtccga
     1741 accgtgttca aacaatacct gagcctgatc tttcacattt ttaccaatca gcagtgtcat
     1801 gattttggtt ccttcgccca gttgatcggc taaatggcgg gcgggagtca gcaattcaat
     1861 cgaaggacga acaattttac cgttggcaac ttcggcccac gtcaaaattc ccttggcacc
     1921 attgcggttg tcataaaacg gaaattcagg tttttcggag gctttctttt cggctgcttc
     1981 ttttttctcc aatacgtttg cacctttgtt gaaattggaa atcaaactgt ctaccagtgc
     2041 tgtttcgtta tggccttcgg acatgataat cggggcacgt tcgctcacga tattcaccac
     2101 attggctaca atagtaggcg aaccgccgag tcctattttc tctgttccca ggccgatatc
     2161 gtcaattccg aaaacggtaa tttgagcatt ccgggcttta attgctcccg ttagcgatgg
     2221 tttgcgtggc ggaatgccgg ttggagtcag cgaaatggtg cagggcatag gcaattgcat
     2281 catttggtaa ccaccttcga taatacgttt
//
LOCUS       DATDNM010000650         2207 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1787437, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000650 DATDNM010000000
VERSION     DATDNM010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1787437"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1635)
                     /locus_tag="VI413_11050"
     CDS             complement(<1..1635)
                     /locus_tag="VI413_11050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HEY6915204.1"
                     /translation="MEANKTGHLSKFGFWGVIVTLGIVYGDIGTSPLYVMKAIIGANI
                     HFDADYIIGAVSCIIWTITLQTTVKYVLITLRADNKGEGGILALYALVRKSKKKWLYV
                     IAIIGASTLIADGIITPSITVVSAIEGLRGINPNTPVVPISILIISALFIIQQFGTKV
                     IGKSFGPMMVIWFSMLGILGLRQIVEFTPILKAFNPYYAIHLLIHFPNWFLIMGAVFL
                     CTTGAEALYSDLGHCGIKNIRVSWIFVKSTLLLNYLGQGAWILTHMSEVNESTNPFYT
                     MMPESFLIFGVIMATIAAIIASQALISGSFSIFSEGMSLNFWPRQRIKYPTEVKGQLY
                     IPFVNWFLYTFCVLTVLFFQTSSAMEAAYGLSITITMLMTTMLLASYLKSKKLNMTFV
                     VGIVGFFLTLEFSFLIANMFKFMHGGWVTILIAGTIFSVMLVWYNARIIKNKHLQFLK
                     IESFFKILSDIRADITIPKYSTNLVYLSKADMKTDIEGKIIYSIINKQPKRADNYWIL
                     HIDHVDDPTTLEYTFEKLIPDTLYRVNIKLGFQVQPL"
     gene            complement(1846..>2207)
                     /locus_tag="VI413_11055"
     CDS             complement(1846..>2207)
                     /locus_tag="VI413_11055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007758067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HEY6915205.1"
                     /translation="QLDKGVNQLMDEGVAQLFVNQYNGRKIIGTVGQLQFEVIQYRLL
                     HEYGAQGRWEPISLYKACWIESDDAAELDNFKKRKAQYMAKDKEGRDVFLADSGYVLQ
                     MAQNDFKNIKFHFTSEF"
BASE COUNT          682 a          401 c          410 g          714 t
ORIGIN      
        1 taaaggttgt acttggaatc cgagtttaat atttacacga tacaacgtat ccggaatcaa
       61 cttctcaaat gtgtattcca atgttgttgg gtcatctaca tggtcaatat gaaggatcca
      121 ataattatct gcacgcttgg gttgtttgtt gataatagaa tagataattt tcccctcaat
      181 gtctgttttc atatccgctt tactcaggta taccagattt gtagagtatt taggaatggt
      241 tatgtcagct ctgatatccg aaagaatttt gaagaacgat tctattttca ggaattgcaa
      301 atgtttgttt ttgatgattc gggcattgta ccaaacgagc ataaccgaaa aaatagttcc
      361 tgctatgagt atggttaccc aaccaccgtg cataaacttg aacatgttgg caatcaggaa
      421 agagaattca agtgttagaa aaaatccaac aattccaaca acaaatgtca tgtttagttt
      481 ttttgacttc aggtaggagg caagtaacat agttgtcatc aacattgtaa tggtgattga
      541 caatccgtaa gctgcttcca tggcacttga cgtttggaaa aacaaaacag ttaatacgca
      601 aaacgtgtac aagaaccagt ttacaaacgg tatatacagt tgtcctttta cctcggtagg
      661 atatttaatc cgttggcgtg gccagaagtt caagctcata ccttcactga aaatagagaa
      721 ggaaccgctg ataagtgcct ggctggcgat gattgcggct atagtagcca ttattactcc
      781 aaaaataagg aaactctccg gcatcatggt gtaaaatgga ttggttgatt cattaacctc
      841 actcatgtgt gtaagtatcc atgcgccttg tcctaagtag tttaacagca gtgttgattt
      901 tacaaaaatc caacttaccc gaatgttctt aattccgcaa tgtcccaaat cggagtataa
      961 tgcttcagct cctgtcgtac ataggaatac agctcccatt attaaaaacc agttaggaaa
     1021 atggattaga agatgtatgg cgtagtaggg gttaaatgct ttcaaaatgg gcgtaaactc
     1081 tactatttgt cttagtccca atatgcctag catggaaaac caaataacca tcattggccc
     1141 aaatgatttt ccgataactt ttgtgccaaa ttgctgtata atgaaaagag cagatattat
     1201 aaggatgctt attggtacaa caggagtatt aggattaatt cctcttaaac cttcgatagc
     1261 tgaaacaact gtaattgaag gagtaatgat accgtcagca attagtgtgc tggctccgat
     1321 aattgcaata acataaagcc attttttctt gcttttgcgg accaatgcgt aaagagctaa
     1381 tatgccacct tcccctttat tatcggccct gagggtgata agtacgtatt ttacagtggt
     1441 ttgaagcgtt attgtccata taatacacga aactgctcca ataatgtaat cggcatcaaa
     1501 atggatgttt gctccgataa ttgctttcat tacatacaga ggagaggttc caatgtctcc
     1561 ataaacaata cctagtgtga caattacgcc ccaaaaacca aatttactta agtgaccggt
     1621 tttattcgct tccataattt tttaatcttt tactaaataa ctatacctaa tttgaagttg
     1681 taatgaaaat gctgcaaagc tttaattttc tgcatccaaa tttatatgaa tgagaaattg
     1741 ttgttgaaat gagttgcttt gtcctgagat tgtgtttttc gagatattag gtttagtgtt
     1801 taaaagtaaa aatcggatct tttaattttt taaaactaaa attcgctaaa actcagatgt
     1861 gaaatggaat tttatatttt tgaaatcgtt ctgagccatt tgaagcacat aacctgaatc
     1921 agctaaaaag acatcgcgtc cttccttgtc tttggccata tattgtgctt tacgtttttt
     1981 gaaattatcc agttcggctg catcatcact ttcaatccag catgctttat aaagtgaaat
     2041 tggctcccaa cggccttgcg cgccatattc atggagtaaa cggtattgaa ttacttcaaa
     2101 ctgaagttga ccgacggttc cgataatttt acgtccgtta tattgattta caaataattg
     2161 tgctacgcct tcatccataa gttggtttac acctttgtcc aattgct
//
LOCUS       DATDNM010000651         4081 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1255626, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000651 DATDNM010000000
VERSION     DATDNM010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4081
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1255626"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VI413_11060"
     CDS             <1..331
                     /locus_tag="VI413_11060"
                     /inference="COORDINATES: protein motif:HMM:NF024863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEY6915206.1"
                     /translation="TKPQNWHADTYERDYQALIDTFKTISSKPRIYLCLPVPVFKTRW
                     GINDSTVVNGVIPIVEKLAQKNNLTVIDLYHGMSNQGINFPDNIHPNEKAAKAMAGII
                     ANTLKEK"
     gene            358..2553
                     /locus_tag="VI413_11065"
     CDS             358..2553
                     /locus_tag="VI413_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6915207.1"
                     /translation="MKKLKTALLCLLAIAGLQAQTKPVYLDNTQPIEARVKDALSKMT
                     LEEKVKLCTAQSKFSSHGVPRLGIPELWMSDGPHGVRMEIMWDSWDHAGWSNDSCTAF
                     PALTCLAASWDPSVSHLFGNAIGEEARYRRKDVLLGPGVNIYRSPLNGRNFEYLGEDP
                     YLASRMVIPYIQGVQENGVSACVKHFALNNQERWRDRIDVQISDRALYEIYLPAFKAA
                     VTEAKVWSIMGSYNKIRGQYACENELTLNKILKGEWKFDGCVITDWGGAHNTKEAALN
                     GLDIEMGTWTNGFSFSKSNAYDNYFLAAPYLKMLRSGEIPVSNVDEKATRILRLIFRT
                     AMNVNKPYGSLASEEHHNAGRTIAEQGIVLLKNTANLLPIDAAKYKTIAVIGENATRK
                     LTEGGGSSELKPKREISALQALTEKLGADKIKYAIGYGSGKVSYDKVYKSPYDAAVIR
                     KEAVELAAKSDIVIFVGGLNKNTQQDSEGDDRRSYSLPFGQNELIAELQKVNKNIVLV
                     MLSGNAYEMPWLPKATTLVQGWYGGSEAGHALANVLTGAVNPSGKLPFTFAAKLNDYG
                     AHSFGAIAFPGDSIKEEYKEDILVGYRWFDTKKIKPLFPFGYGLSYTTFEYGKMAADK
                     KTYTADETIKLSFTVKNTGKIEGKEAVQVYASQTKASVVRPVKELKAFKKVFLKAGET
                     QTVELEVKVKDLAFFNEITHDWTVEPGEFVLCNAASSADVKSQVKIQVQ"
     gene            complement(2632..3054)
                     /locus_tag="VI413_11070"
     CDS             complement(2632..3054)
                     /locus_tag="VI413_11070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008763237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6249 domain-containing protein"
                     /protein_id="HEY6915208.1"
                     /translation="MMDFITIPLVVGIITLGIYRLFDLFVRKKERLTIIDKIGDKFDS
                     SMIENKFSFPFISQSPATFGTLKIGCLLLGVGFGLLVGFFICQVYVYGAIPNININHD
                     AYEISGVIYGASVLLFGGLGLLAAFLIEMKYRKDKKEE"
     gene            3198..3743
                     /locus_tag="VI413_11075"
     CDS             3198..3743
                     /locus_tag="VI413_11075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005848200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6915209.1"
                     /translation="MNNQDEINYIERILAGETNLFSYFVNSYSNSIYSLIVRIVLTNE
                     DAEELTQDSFLKAFKKLDSFKGDCSFSTWLFRIAYNTAISATRKKKIVFPTVDEAMIE
                     SVPDEAIETFFDPDENEIKLQKLEEAITKLNVEEKTLITLFYTEDKSVAELARVLDLS
                     PENVKVKLYRVRKKLYVLMTK"
     gene            3746..>4081
                     /locus_tag="VI413_11080"
     CDS             3746..>4081
                     /locus_tag="VI413_11080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915210.1"
                     /translation="MNNDKAIIKVLQSTEIPRLSADFNSRLMAEVYRTVERKKKRAYV
                     LGLCLISGVSLALIGLAVYVFYTYFSMDFKFELPKLPKMQLSSETKSIYAFSTYIALL
                     SLMLICLDNY"
BASE COUNT         1269 a          857 c          885 g         1070 t
ORIGIN      
        1 cacaaagcct caaaactggc atgccgatac ctacgaacgg gattatcagg cattgattga
       61 tacgtttaaa accatttcat cgaaaccaag aatttacctg tgcctgcctg tgccggtatt
      121 caaaacccgt tggggaataa atgactcaac agtagtcaat ggcgttatcc caatagttga
      181 aaaacttgca cagaaaaaca acctgacggt gatagattta taccatggca tgagtaatca
      241 gggaattaat ttcccggata atattcaccc caacgaaaaa gcggcaaaag ccatggcggg
      301 cattatcgcc aacacattga aggaaaaata actacaaact ataataatta agcacagatg
      361 aaaaaactaa aaacagcctt actctgcctg ttggcaatag caggactgca agctcaaaca
      421 aaacccgttt atctcgacaa cacacaaccg attgaagcgc gggtaaaaga tgccctttcc
      481 aaaatgacat tggaagaaaa agtaaaacta tgcaccgcac aatcgaagtt tagttcccac
      541 ggtgttccac gccttggcat tcctgaactt tggatgagcg atggcccgca tggggttcgt
      601 atggaaatta tgtgggacag ttgggatcat gcgggttggt ctaacgactc atgtacggcc
      661 tttccggcgc taacttgcct cgctgcctcg tgggatcctt ccgtttccca cttgtttggc
      721 aatgccattg gcgaagaggc ccgttaccgt cgtaaagatg tgttgctcgg accgggtgta
      781 aacatttacc gctcgccgtt gaatggtcgt aacttcgaat acctcggcga agacccttat
      841 ctggcttccc gcatggtgat tccgtatatc cagggagttc aggaaaatgg tgtttcggct
      901 tgtgtgaaac attttgcact gaataatcaa gaaagatggc gcgaccgcat tgatgttcaa
      961 atcagcgacc gtgctttgta cgaaatttat cttcctgcat tcaaagcagc agttaccgaa
     1021 gcaaaggttt ggtctatcat gggttcgtac aacaaaattc gcggtcaata tgcctgcgaa
     1081 aacgagttga cgctgaataa aatcctcaaa ggcgaatgga agtttgacgg ttgtgtgatt
     1141 accgactggg gtggggcaca caataccaaa gaagctgctc ttaacggact cgatattgaa
     1201 atgggaacct ggacaaatgg ttttagcttc agcaagtcta atgcgtacga caattatttt
     1261 ttggctgctc cctatttaaa gatgcttcgt tcgggtgaaa ttcccgtttc caacgtagat
     1321 gaaaaggcta cacgtatcct gcggcttatt ttccgcaccg ctatgaacgt aaacaaacct
     1381 tatggttcat tggccagcga agaacatcac aatgcagggc gcaccattgc agagcaggga
     1441 atcgtattgc tgaaaaacac agccaacctg ttgcctattg atgccgcgaa atacaaaacc
     1501 atcgctgtaa tcggtgaaaa tgccacccgt aaacttactg aaggcggcgg ttcgtcggaa
     1561 ttgaaaccaa aacgtgaaat ctcagctttg caggcgttga ccgaaaagct gggtgccgat
     1621 aaaatcaaat atgccattgg atatggttcg ggaaaggttt cgtacgataa ggtatataaa
     1681 tcgccttacg atgctgcggt tatcaggaag gaagctgtgg aactggctgc aaagtcagac
     1741 atcgtcatct ttgtgggtgg attgaacaag aatacgcaac aggacagcga aggggatgat
     1801 cgccgttctt atagcctgcc tttcggacaa aacgaattga ttgccgaact gcaaaaggta
     1861 aataaaaata tcgtgctggt tatgcttagc ggcaatgcgt acgaaatgcc ctggttacca
     1921 aaagccacca cgcttgtgca gggttggtat ggcggttcgg aagccggtca tgctcttgcc
     1981 aatgtgctta caggcgcagt aaatccaagt ggcaagttgc cgtttacctt tgcggctaag
     2041 ctcaacgact acggcgcaca ttcgtttggt gctattgctt tccccggcga cagtataaag
     2101 gaagaatata aggaagatat tctggtaggt taccgctggt tcgataccaa aaagattaaa
     2161 ccgctgttcc cgtttggcta cgggctttcg tataccacct ttgaatacgg aaaaatggct
     2221 gctgacaaaa aaacgtatac ggccgacgaa accatcaagc tttcgtttac agtaaaaaac
     2281 accggaaaaa tagaaggtaa agaagctgtt caggtttacg cttctcaaac caaagcatct
     2341 gttgtgcgtc cggttaaaga attgaaagca tttaaaaagg tattccttaa agccggcgaa
     2401 acacaaacgg tggaattgga agtgaaggta aaagacctgg catttttcaa cgaaatcacc
     2461 catgactgga cagtggaacc gggagagttt gttctttgta atgccgcctc ttcggctgac
     2521 gtaaaaagcc aggtaaagat tcaggtgcaa taaatatctg acttctatag acacaaacag
     2581 tcccaaaatt tagtattttc ggactgtttg tgttttttga acatgcttgt tttattcttc
     2641 ttttttgtct tttcggtatt tcatttcgat aagaaaagca gccaataatc ctaagccacc
     2701 aaataacaat accgaagctc catagattac acctgaaatc tcataagcat catgattaat
     2761 attgatatta ggaatagccc cataaacata aacctgacaa ataaagaatc caacgagcaa
     2821 tccaaaccct acgcccagta ataaacaacc gatctttaat gttccgaaag tggccggtga
     2881 ctgagaaata aaaggaaatg aaaacttgtt ttcaatcatg gaagagtcaa atttatcgcc
     2941 aatcttatca ataatagtca aacgctcttt tttgcgtaca aacaaatcaa acaatctgta
     3001 aataccaagg gttataattc caacaaccaa tggaatagta ataaagtcca tcataatttt
     3061 ttgttttaaa gtaaataatt tcgttctttg tactgtttga cgcagcaacc cgaaaatggt
     3121 tacacatttc ccccgttttt atttcttctt taaaaaagtg taaccaaaac cgactgcctg
     3181 cgtcttatac aatatatatg aataatcagg acgagataaa ctacatagaa cgcatacttg
     3241 ccggcgaaac gaatttattt tcgtatttcg tcaactcgta cagcaactct atctactcgt
     3301 tgattgttcg tatagtactg acaaatgaag atgcagaaga actgacgcag gatagttttc
     3361 taaaagcatt caaaaagctg gacagtttca aaggcgattg cagtttctct acctggctgt
     3421 ttcggatagc gtataacacc gctatttcgg ccactcgaaa gaaaaagatt gtctttccaa
     3481 cggtggacga agcaatgata gaaagcgtgc ccgacgaagc aattgaaact tttttcgatc
     3541 ccgatgaaaa tgaaatcaaa ctgcaaaagc tcgaagaggc tattaccaaa ctgaatgtgg
     3601 aggaaaaaac gctaataacg cttttttata ccgaagataa atcggtggca gagctggccc
     3661 gggtgttaga cctaagcccc gagaatgtaa aggtaaagct ttacagagtg agaaagaaat
     3721 tatatgtttt aatgacgaaa tgaatatgaa caacgataaa gcaattataa aagtgttgca
     3781 atcgaccgaa atcccccgac tttctgccga tttcaattca cgccttatgg ctgaggtgta
     3841 tcgcaccgtg gaacgaaaga agaaacgagc gtatgtactt ggactatgcc ttatttcggg
     3901 ggtttcactg gcgttgatag ggttggctgt ttacgtgttc tatacctatt tttcaatgga
     3961 ttttaagttc gaacttccca agttaccgaa aatgcagctc tcgtcggaaa ccaaatcaat
     4021 atatgcattc agcacctata tcgctctgct ctcgttgatg cttatctgtt tggataatta
     4081 t
//
LOCUS       DATDNM010000652         4132 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1787640, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000652 DATDNM010000000
VERSION     DATDNM010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4132
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1787640"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..670)
                     /locus_tag="VI413_11085"
     CDS             complement(<1..670)
                     /locus_tag="VI413_11085"
                     /inference="COORDINATES: protein motif:HMM:NF016903.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnan synthesis F family protein"
                     /protein_id="HEY6915211.1"
                     /translation="MRRIAFYLFYDEFGEVDDYIPTKLTALQEFVEDIVVVSNSKMTV
                     AGRAKLENIGATVFCRENVGFDVWGYKEGMETIGYDELASNYDEVILLNYTFFAPIFP
                     FAELFNEMDSRDCDFWGISEHNEMVPNPFTGTGILARHIQSHFIAIRKKLLSTIEFKK
                     YWQDMPMIKSYTDSVLSHESRFTSHFQSMGFTSSVYISNDDYPSDYPTFIDVKRTIEN
                     RCPIL"
     gene            complement(684..1418)
                     /locus_tag="VI413_11090"
     CDS             complement(684..1418)
                     /locus_tag="VI413_11090"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6915212.1"
                     /translation="MNSEIVLNNVGLQFELYHNKSSSLKEMFADLFSRTHQKKNDTFL
                     ALNNINLKINHGDRLGIIGHNGAGKSSLLKVLCKIYTPTSGTISIKGKVAPLLEIGAG
                     FNPELSGRENIYLNGTILGYNLKRLREIEPDIVEFAELEQFIDMPVKYYSTGMYMKLA
                     FSIATATQPDILILDELFAGGDADFIQKAQARMKAMIEDSNIMVFVSHQMDLLHELCN
                     RVIWVDHGNIIADGRPDEIINQYLNK"
     gene            complement(1421..2197)
                     /locus_tag="VI413_11095"
     CDS             complement(1421..2197)
                     /locus_tag="VI413_11095"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6915213.1"
                     /translation="MNSFINEIIEYRQVLRQLIHQQITMRYRRTFFGFLWTLLNPLLN
                     MAIIAVVFSLVMKFQVNEYAIFLFAAMIPWSVFSNSLNQGGGALLANESLFKKIYLPK
                     QLFVISVVISTLVDSLLSTACLFIIALILGAKISAALLFLPVAFLLLVMFSLGVTFIL
                     SIVTVYYRDVQYLIGVVLQALYFATPIIYPITAIPEKFHAIFTWNPLVYYIDLFRSPI
                     YFGTLPDAHSLIICSVCSLLSIVCGVIYFRRNDAKVIFRL"
     gene            complement(2194..3057)
                     /gene="rfbD"
                     /locus_tag="VI413_11100"
     CDS             complement(2194..3057)
                     /gene="rfbD"
                     /locus_tag="VI413_11100"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: protein motif:HMM:TIGR01214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HEY6915214.1"
                     /translation="MRVLLTGAKGQLGQSLCRHIPKDWVVLAADKIFLDIANESNVYD
                     IISDFKPDVVINTAAFTSVDDAETNVEFSESVNNLGAKYVAQASSRYGAKLIHVSTDY
                     VFDGTSTVPYIEEDIVKSLNVYGSTKRKGELEVLKHHAEAIIIRTSWVYSEYGKNFLK
                     TIYNLVENNKDIKVVSDQVGAPTYAPDIAHLIVNIIKEGTLLPGLYHYSGDTVMSWYD
                     FASKIAAAVASSGSKVEPISSEEYKAIARRPKYSVLNCDKIEKFGYKRSCFSQGFEQS
                     VRALIDESKKI"
     gene            complement(3054..3590)
                     /gene="rfbC"
                     /locus_tag="VI413_11105"
     CDS             complement(3054..3590)
                     /gene="rfbC"
                     /locus_tag="VI413_11105"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019150446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HEY6915215.1"
                     /translation="MKVIDTAIHDVKIIEPKVFGDERGFFLETFEKKRYQEMLNISLD
                     FVQDNHSRSTKDVLRGLHFQKINPQGKLVRVVSGAVFDVAVDIRPDSKTYGKWVGVEL
                     SAENKNQLWIPPGLAHGFCVLTDTADFEYKCTDYYYPEHEGCLLWNDETVGIEWPVIN
                     PKLSEKDKKGLTLANLYK"
     gene            complement(3814..>4132)
                     /locus_tag="VI413_11110"
     CDS             complement(3814..>4132)
                     /locus_tag="VI413_11110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005863000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEY6915216.1"
                     /translation="AKQVKPSARGELEITTLNQMYLDQGNLQVELLGRGFAWLDTGTH
                     DSLVEASQFIHTIEKRQGMKVACLEEISYRNGWMSKAQVEEQAKKLAKTDYGRYLKIL
                     ISE"
BASE COUNT         1327 a          852 c          686 g         1267 t
ORIGIN      
        1 tcagtatcgg gcatctgttt tcaatagtcc gcttaacatc aataaacgtt ggataatctg
       61 aaggataatc atcattactg atatagacag atgatgtgaa tcccattgac tgaaagtgag
      121 aagtaaagcg tgattcatga ctcaatacag aatcagtata gcttttaatc attggcatat
      181 cttgccaata ttttttaaac tctattgtgc ttaacagctt tttgcgaata gcaataaaat
      241 gagactgtat atggcgagct aatattccag ttcctgtaaa aggatttgga accatttcgt
      301 tatgttcgct aattccccag aaatcacaat ccctgctatc catttcattg aacagttcag
      361 caaaagggaa aatcggtgca aagaaagtat aattgagtag aatcacctca tcataattac
      421 tggctaattc gtcatagcca atagtttcca ttccttcctt ataaccccat acatcaaagc
      481 ccacattttc gcggcagaaa acagtagcac cgatgttttc aagttttgcc cttcctgcga
      541 ctgtcatttt cgaattcgaa acaacaacaa tatcttcgac aaattcctgt aaagctgtta
      601 gtttcgttgg aatataatca tcaacttcac caaattcatc ataaaaaaga taaaaggcaa
      661 tcctgcgcat taaataccac cacttattta ttcaaatatt gattaataat ctcgtcgggt
      721 ctaccatcag caataatatt cccatggtca acccaaataa cgcgattgca aagttcatgc
      781 aaaagatcca tctggtgaga aacaaacacc attatattgg aatcctctat catcgccttc
      841 attcttgcct gtgctttttg aataaaatca gcatcgccac cagcgaagag ttcatcaaga
      901 attaaaatat caggctgagt agcggtcgcg attgagaatg ccagcttcat atacatcccc
      961 gtcgaatagt atttcactgg catatcaatg aattgttcaa gttcagcaaa ctctacgata
     1021 tcaggctcaa tttctctcaa tcgttttaaa ttataaccaa gaatagtacc attgaggtaa
     1081 atattttccc tgccactcag ttccgggtta aaccccgcac cgatctcaag cagtggcgca
     1141 actttacctt ttatgctaat agtaccgctt gttggcgtat aaattttaca caaaactttt
     1201 aataaagagc tcttgcctgc accgttatgt ccaataatac ctaatctatc accgtggtta
     1261 atttttagat tgatgttatt taaagctaaa aaggtatcat tttttttctg atgagttctg
     1321 gaaaataaat cagcaaacat ctctttcaaa ctcgaacttt tattgtgata aagttcaaat
     1381 tgcaatccaa cattattgag aactatttca gaattcatat ttacaaccta aatatcactt
     1441 ttgcgtcatt gcgtctaaaa tagattacac cacatacaat acttagcagt gaacaaacag
     1501 aacatattat tagcgagtga gcgtcaggta atgtcccaaa ataaattgga gagcgaaaga
     1561 gatcaatata atatacaagc ggattccagg tgaatatcgc atggaacttt tccggtatag
     1621 ccgttatcgg atagatgatt ggtgtggcaa aatataatgc ttgtaatacc accccaataa
     1681 gatattgaac gtcacgataa tacacagtca caattgaaag tatgaatgta accccaaggg
     1741 aaaacattac caacagcaga aatgcaacag gtagaaataa aagtgcagca gaaattttag
     1801 cgccaaggat taaggctata ataaacaaac aggcagtgct aagtaatgaa tccaccaatg
     1861 tcgagataac gacggatatt acaaacaatt gttttggaag atatattttt ttgaacaaag
     1921 attcatttgc cagtaatgcc ccgccgccct ggttaagaga gttggaaaaa accgaccaag
     1981 gtatcattgc agcaaataaa aatatagcgt attcattaac ctgaaacttc attactagcg
     2041 aaaacactac agcgataatc gccatattca ataatggatt cagtaaggtc cagaggaaac
     2101 caaagaaagt tcttctgtac ctcatagtaa tctgttgatg aataagttgt cttaaaacct
     2161 gtcgatactc aattatctca ttaataaacg aattcatatt tttttacttt catcaataag
     2221 agcacgaaca ctctgttcaa agccttgtga aaaacaggaa cgtttgtaac caaacttttc
     2281 tattttatcg caatttaaaa cactatattt tggtctcctg gcgatagctt tatattcttc
     2341 agaactaatt ggctcaactt ttgatcctga cgatgccacc gctgctgcta ttttactggc
     2401 aaaatcatac caactcatta cagtatcacc actgtaatga tagaggccag gtaaaagtgt
     2461 tccttctttg attatattga caatcaaatg tgcaatatct ggcgcatacg taggtgcacc
     2521 aacctggtct gatacgactt tgatatcttt attgttctca actaaattat aaatagtttt
     2581 taaaaaattt ttgccatatt cgctgtatac ccaggatgtt cttattataa tcgcttcagc
     2641 atgatgttta agtacctcta gttctccctt acgttttgta ctgccatata cattaaggga
     2701 ttttacgata tcttcttcga tatacggtac agtgctagta ccgtcgaaaa cataatctgt
     2761 ggatacatgg ataagtttag ccccatatct cgatgatgct tgggcgacat attttgcgcc
     2821 caaattattt acgctttcag aaaattcaac attcgtttcg gcatcatcta cagaagtgaa
     2881 ggctgctgta ttgataacga catcaggctt aaaatcggaa ataatatcat aaacattgct
     2941 ttcgttagca atatccagga atattttatc tgccgccagt acaacccagt ctttcgggat
     3001 atgtctgcaa agactctgtc ctaactgacc tttagctccg gttagcaata ctctcattta
     3061 taaagattcg ccaaagtaag acctttttta tccttttcag ataattttgg attgatcacg
     3121 ggccattcaa taccgaccgt ttcatcattc caaagcaaac atccttcatg ttccggataa
     3181 tagtaatcag tacatttata ttcaaaatct gcggtatctg tgagaacgca aaaaccatgt
     3241 gcaagtccag gtgggatcca aagttgattc ttattctcgg cagaaagttc tacaccgacc
     3301 catttgccat aggtctttga atccgggcgg atatcaacag caacatcaaa tactgcaccg
     3361 ctgacaacgc gaactaattt accctgtgga ttaatttttt ggaaatgcag gccacgcaac
     3421 acatctttag tggaacggga atggttgtcc tgcacaaagt caagactgat attgagcatt
     3481 tcttgataac gtttcttctc aaaggtttca aggaaaaatc cgcgttcgtc cccaaaaact
     3541 tttggctcga taatttttac atcgtgtatg gctgtatcaa tgactttcac aaaactgccc
     3601 cttcataaga aattatttat aacacttgtt tgttgcgttt atacacaatc cctgcagatg
     3661 tttctttagt tagtgaattt aacgttggat agtttttatg tttatatttt tttatttaaa
     3721 acatatcttc aataacgcaa agaacggtca aataaagata acccccccat atggattgaa
     3781 atggacatta cataacgggg aggaaaatat tatttattcg ctaattaaaa ttttgagata
     3841 acgaccatag tctgttttag caagtttctt agcttgttcc tcaacttgag ccttgctcat
     3901 ccatccatta cgatatgaga tctcctcaag gcaagccact ttcatgccct gacgcttttc
     3961 aatggtatga ataaactgcg acgcttccac aaggctgtca tgggtgcccg tatccaacca
     4021 agcaaatcca cggcctaata gctcaacctg caaattaccc tgatcaagat acatctggtt
     4081 gagcgtagta atctcaagtt ctccacgcgc tgatggctta acctgttttg cc
//
LOCUS       DATDNM010000653         3127 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2002597, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000653 DATDNM010000000
VERSION     DATDNM010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3127
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2002597"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..487
                     /locus_tag="VI413_11115"
     CDS             <1..487
                     /locus_tag="VI413_11115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915217.1"
                     /translation="LFGLYWLISSVFSIGQIVYFSTTTNTGWSGLLYSFIVLIVLILL
                     FYLLIFKADTIINKLKLDKGFDEDRIEFQNFNVENILVLAIVIIGATMILDSIATFLN
                     QVYLSVKVLMSNQSDIVTVNGQSNYHLVLSFTKIVLGYVLLTNYPAVSKFLLKIPEKK
                     A"
     gene            578..1153
                     /locus_tag="VI413_11120"
     CDS             578..1153
                     /locus_tag="VI413_11120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubrerythrin family protein"
                     /protein_id="HEY6915218.1"
                     /translation="MKSIKGTETEKNLLKSFAGESQARMRYTYFAKVAKTEGFEQISA
                     IFLETAEQEKQHAKKFFSYLEGGMVEITASYPAGIISTTAENLREAANGENEEWTDLY
                     PHFADVAEAEGFPNIAATWRKIAAVEAQHEKRYRTLQARVEAGTVFSREEETTWQCRE
                     CGHVHVGKEAPKACPTCAHPQAYFEVEKTNY"
     gene            1297..1959
                     /gene="mnmD"
                     /locus_tag="VI413_11125"
     CDS             1297..1959
                     /gene="mnmD"
                     /locus_tag="VI413_11125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD"
                     /protein_id="HEY6915219.1"
                     /translation="MNSELKITSDGSHTLFVPEIDECYHSSHGAIQESRHIFIEAALK
                     QCVKTDIRILEVGFGTGLNALLAFAEAKKAVKRIHYTTLEKFPVSPKKALLLNFPDLI
                     DNNLKEVFEHMHGCNWNELKQISPFFEIEKLETDFTTYEHTGQYDVIFFDAFSPEKQP
                     EMWTEEQFRKIAARCNPRAILTTYCAKGAVRRAMQAAGFTVERLPGPPGKREILRGTY
                     LM"
     gene            2026..2664
                     /locus_tag="VI413_11130"
     CDS             2026..2664
                     /locus_tag="VI413_11130"
                     /inference="COORDINATES: protein motif:HMM:NF025736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY6915220.1"
                     /translation="MKKYAAFYIPYILFALILSALLLFNSKADLHLWLTSFHTPANDV
                     FFHYYTYVGDWIPYAIAGGLLFYQYRMPLFIVLTQLATGLASQIIKHALNEPRPLLYF
                     KQNFSAIRLHEVAGEHLHSTHSFPSGHTTTAFAFFLVLAFYTKKPALHFLYFILAALV
                     GYSRIYLSQHFALDVFAGSIIGVSVTILCKYYFDKQPLKWADGSLRDVFSRK"
     gene            2786..3055
                     /gene="rpsO"
                     /locus_tag="VI413_11135"
     CDS             2786..3055
                     /gene="rpsO"
                     /locus_tag="VI413_11135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007763600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEY6915221.1"
                     /translation="MYLTAEKKQEIFGQYGKSNTDTGSPEAQIALFSFRINHLTDHLK
                     SNKKDYSTERALVILVGKRRRLLNYLKDNDIMRYRAIIKELGIRK"
BASE COUNT          982 a          646 c          577 g          922 t
ORIGIN      
        1 actatttgga ttgtattggc tgattagttc tgtcttttca attggtcaaa ttgtatattt
       61 ctcaacaaca accaatacag gttggtccgg cttgctttat tcattcatcg tgttaattgt
      121 actgattctc ttgttttatc ttttaatttt caaagcggac acgataatca ataaattaaa
      181 actcgataaa ggtttcgatg aagatcgtat tgaatttcaa aattttaatg tggaaaatat
      241 tttagttctt gctatcgtta taattggagc aactatgata ttggatagta ttgctacatt
      301 tctgaatcag gtatacctga gcgtaaaggt tctcatgtcc aaccagtcgg acattgtcac
      361 cgtaaacgga caaagcaact atcatctggt attgagtttt acaaaaatag ttctcggata
      421 tgtactgctc acaaattatc cggctgtaag caaattttta ttgaaaattc ccgagaagaa
      481 agcttaaaac attcaattgc attattagca cttttatata tctttgtaaa catataaaat
      541 tgaagtaaaa atctattcat ccataaaatt tacgaatatg aaaagtatta aaggtacaga
      601 aacagaaaaa aatctgctga aatcgtttgc cggcgaaagc caggcacgta tgcgctacac
      661 ctattttgct aaagtggcaa aaactgaagg ttttgaacaa atttcagcta ttttcctcga
      721 aactgccgag caggaaaaac aacatgcaaa aaaattcttt agctacctgg aaggtggaat
      781 ggttgaaatt accgcctctt atcctgccgg aatcatttct actactgcag aaaacttaag
      841 agaagcagca aacggcgaaa atgaggaatg gactgatctt taccctcact ttgccgacgt
      901 ggccgaagct gaaggttttc caaacattgc tgccacctgg cgcaaaattg ctgccgtaga
      961 agcacaacac gaaaaacgct accgcaccct acaagcccgc gttgaagcag gaacagtttt
     1021 ctctcgcgaa gaagaaacaa cctggcaatg tcgcgaatgc ggtcacgttc atgtaggcaa
     1081 agaagctcca aaagcttgtc ctacctgcgc gcatccacaa gcttacttcg aagtggaaaa
     1141 aacaaactac taaattaatg cataattcat aatgcatagt ttataattta agcaaccatt
     1201 attcaccgaa gaataatggt tgctttgctt tatgcttttc agtacttttg ttcagcaata
     1261 attatgaatt atcaattatg cattatgaat taaataatga attctgaatt aaaaattacg
     1321 tctgatggtt cgcacacgct attcgtgccc gaaattgacg aatgctatca ttcgtcgcac
     1381 ggagccattc aggaatcgcg acatattttt atcgaagctg cactcaagca atgcgtaaaa
     1441 actgacattc ggattctgga agtgggcttt ggtaccggat tgaatgctct attggcattt
     1501 gccgaagcca aaaaagcagt caaaagaata cattatacca cactcgaaaa attccccgtt
     1561 tcaccgaaaa aagcacttct actgaatttt ccggatttga ttgacaataa tttgaaagaa
     1621 gtctttgagc acatgcacgg ttgtaactgg aacgaactga aacaaatcag cccgttcttc
     1681 gagattgaga aactggaaac cgacttcact acctacgagc ataccggaca atacgatgtg
     1741 atatttttcg atgctttttc gccggaaaag cagcccgaaa tgtggacaga ggaacaattc
     1801 cggaaaatag ccgctcgttg caatcccaga gccatcctga ccacatattg tgcaaaaggt
     1861 gctgtcagac gcgccatgca agctgccgga tttacagttg aacgcctacc cggccctccc
     1921 ggaaaaagag aaatactcag aggaacttat ttaatgtgat aatgagctga tacgttgatg
     1981 tgataatatg ttgatgtgat aatgttgcaa tacaaatgtt aacaaatgaa gaaatacgcc
     2041 gctttttata ttccctacat tctgtttgcg ctgatacttt cagcactttt gttgtttaat
     2101 tcaaaagccg atctgcacct ttggcttaca tcgttccaca cgcccgcaaa cgatgttttc
     2161 ttccattatt acacctatgt gggcgattgg attccgtacg caattgcggg tggactgctt
     2221 ttttaccaat accgcatgcc gctttttatc gttcttaccc aacttgccac cggcctggct
     2281 tcacaaatca taaaacatgc gctgaatgaa ccccggcctt tattgtattt caaacaaaat
     2341 ttttcggcaa tacgcctgca cgaagttgcc ggagagcacc tgcacagcac tcatagtttc
     2401 ccatccgggc acactaccac ggcatttgca tttttccttg tattggcttt ttacacgaaa
     2461 aaaccggcat tgcatttttt atattttatt ttagctgctt tggtcggata ctcccgcatt
     2521 tatctttcgc aacattttgc actggatgta tttgccggat ccatcattgg cgtctcggtc
     2581 acaatcctat gcaaatacta ctttgacaaa caaccactaa aatgggcaga tggctcatta
     2641 agagatgttt tttcaagaaa ataacccgga aacatttgtt gcttcgaata aaaaacgtat
     2701 ctttgcaagc tcaaaatcga acgtgtagtt ttgtgatgtg tacaaggcta agtttgtatt
     2761 ttaaaacatt tattactaat aaattatgta tttaaccgct gagaaaaagc aagaaatctt
     2821 cggacaatac ggcaagtcta acactgatac tggctcacca gaagcacaga ttgcattgtt
     2881 ttcgttccgt atcaaccatt tgacagacca tctaaagtca aacaaaaaag attatagtac
     2941 agaacgcgct ttggttattt tggtaggaaa acgtcgtcgt ttgctcaatt atttgaaaga
     3001 caacgatatc atgcgctacc gtgcaatcat caaagagtta ggtatcagaa agtaattctg
     3061 gctttcaaaa cttaaaaaag gcgtttcaaa agctattttg aaatgccttt tcttttaccc
     3121 aaacacc
//
LOCUS       DATDNM010000654         2706 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_934092, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000654 DATDNM010000000
VERSION     DATDNM010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2706
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_934092"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..425
                     /locus_tag="VI413_11140"
     CDS             <1..425
                     /locus_tag="VI413_11140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015546878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY6915222.1"
                     /translation="LRQVDNLIKTQNELKVLYSKKFIAEPSKVTISSMDEKLLEKAMD
                     HIEQNMSNCDYNVESFVSDMAIGRTLLYQKINDITGMSIKEFIMDIRLKRSAQLLKES
                     DLTISEIADLTGFVNPKYFSVCFKKHFELTPSEFKKKS"
     gene            878..>2706
                     /locus_tag="VI413_11145"
     CDS             878..>2706
                     /locus_tag="VI413_11145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019150052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6915223.1"
                     /translation="MEIHRNLKKRLLIATLFLVSALQMYAVQDVIKVTGKVVDGNGEA
                     LVGVTVRIKDGNTGTVTDIAGKYTMQVKPSSVLVFTYVGFVAQEVEVKSSGVVDVTMK
                     DNGEQLDEVVVVGYGTQRKKDLTGGLSVVGKEQLEMVSTNNLMDRLVGQVAGLSITTS
                     NAAPGSDQSLLIRGQNSLSASNDPLIILDGIPYSGSFADLDPNIIESLSVLKDASAAA
                     IYGSRGSNGVILIQTKRGVLGKPQVTYKGQFGVSQPMQRIQVMGPNEFIRFKQDIGRL
                     KNGYTGDQLDPIAGNIISVSERENYINGITYDWQDLIFRTGNTMDHQIGISGGTETTK
                     YMAAIAYLNEEGVVYNSNLSRSNISANIDQIFNKWLTIGVGTQFVQKDNGGITPNIEH
                     AIKQSPYGKYKDESGYYVPEPMEYSLIVNPMNNVNADQDKTSRNFFLNAYANILFPVK
                     GLSFRMNYGYNYRSGFTGTYYGRDTYEGREKAGLVGGKASISNSHYNDYTWENVLRYE
                     REIGSHRFDATGLFSMQQTKSVSSSQSAEGFVTDDTSYFMMGTAERNQTISSGLSETA
                     MLSYMLRLNYAYKGKYMATLTGRSDGASVFGKNNKYAFFPSAAL"
BASE COUNT          876 a          451 c          565 g          814 t
ORIGIN      
        1 tgctcagaca ggtagataat ctgataaaaa ctcaaaatga gctaaaagtg ctgtacagta
       61 agaaatttat tgcagaacct tcaaaggtta ctatatcttc gatggatgaa aaacttttgg
      121 agaaggcaat ggatcacata gagcaaaata tgagcaattg cgattataat gtcgagtcat
      181 ttgtgtcgga tatggctatc ggacgtacgc ttttatatca aaaaattaat gatataacgg
      241 gaatgtctat caaagagttt atcatggata tccggcttaa aagaagcgct cagttactaa
      301 aagaatcgga tttaaccata tcagagattg cagacctgac cggatttgtt aatcccaaat
      361 actttagcgt ttgctttaaa aaacactttg aattaacccc ctcagaattt aaaaagaagt
      421 cgtgataatt tctttttcat gaattgttca aattgagtaa ttccgtacaa actgaaactg
      481 tttttgaata aaactgatca ggggaaaata ggtttagggt gtttcacact ctaagcctat
      541 ttttttagct ggttatttcg cccaatctat tgagtttcct gtgatagtat ttaatgcttt
      601 acagggtttg tttttaacca ttctgtacaa actgaaacta tttttgaata aaccgataac
      661 cttgtgtgtt tgcacttagg ctacctttgc tgcacagata aagggatttg tcttcacttt
      721 ttattttata ttgatcaaaa atctgaatca aattaaaaat aaaaaaatac atgagaaaaa
      781 cactatgcta tgctgatatt cgatctccct ctttaaagta ttatcaatat aaaatgtaaa
      841 tgcaatacat aatttaaata tatcttaaat ataaaaaatg gaaatacaca gaaatttaaa
      901 aaagcgctta ttgattgcga ctctgtttct tgtttctgca ttacagatgt atgcggtgca
      961 agatgttatt aaagtgaccg gaaaagtcgt agatggaaat ggtgaagctc tggttggagt
     1021 cacggttcgg attaaagatg gtaataccgg aacagttacc gatatagccg gaaaatacac
     1081 tatgcaggtc aaaccttctt cagttttagt ttttacgtat gtaggttttg tcgcacaaga
     1141 agttgaagtg aagtcttccg gagtggttga cgtaacaatg aaagataacg gtgagcaact
     1201 tgacgaagtg gttgtagtag gttacggtac ccagcggaaa aaagatttaa ccggaggcct
     1261 ttcagtggta ggtaaagaac aattggaaat ggtttcaacc aataatttaa tggatcgttt
     1321 ggtgggtcag gttgcaggtt tgagcattac cacttctaat gcagctccag gaagcgacca
     1381 atctcttctt atccgtggtc agaactcatt atccgcaagc aatgatccat tgattatttt
     1441 agatggaatt ccttacagtg gatcattcgc cgatcttgat cctaatatta ttgaaagtct
     1501 ttctgtgttg aaagatgctt cggcagctgc aatttatgga tcgcgtggtt cgaacggtgt
     1561 aattcttatt cagactaaaa gaggtgttct tggaaaacct caggtaactt ataaaggtca
     1621 gttcggagtg tcgcagccga tgcagaggat acaggtaatg ggacccaatg aattcatacg
     1681 tttcaagcag gatataggcc gtcttaaaaa tggatacaca ggcgatcagc tggatcctat
     1741 cgcgggaaat attatcagtg ttagtgaacg tgaaaattat atcaatggaa taacctatga
     1801 ctggcaggat ctgatcttca gaaccggtaa tacaatggat caccagattg gaatatcagg
     1861 aggtactgaa acaactaagt acatggctgc tattgcttat ctcaatgagg aaggggttgt
     1921 atacaattcg aaccttagtc gatcaaacat ttcagctaat atagatcaaa tcttcaataa
     1981 atggttaaca atcggtgttg gtacccagtt tgttcaaaaa gacaacggcg gcataacccc
     2041 gaatatcgaa catgccatta aacaaagccc ttacggaaaa tataaagatg agtccggcta
     2101 ttatgtaccc gaacctatgg agtactcgct tattgtcaat ccgatgaata atgtgaatgc
     2161 ggatcaggat aagacaagcc gaaacttttt cctgaatgcg tatgctaata ttttgtttcc
     2221 tgttaaaggg ttgagtttcc ggatgaatta tggatataac tacagaagtg gctttaccgg
     2281 aacatattat ggacgtgata cttacgaagg aagagagaaa gctggtctgg taggtggaaa
     2341 agcaagtatc agcaatagtc actacaatga ttatacatgg gaaaacgtac tccgctatga
     2401 acgcgaaatt gggagtcacc gttttgatgc aacaggatta tttagtatgc aacaaaccaa
     2461 aagcgtttca tcttctcaga gtgcagaagg ttttgtgaca gatgatacga gttatttcat
     2521 gatgggtact gccgaacgta atcaaacaat atcttccggt ttatcagaaa cagcgatgtt
     2581 gtcatatatg cttcgtttga attatgctta taaaggtaaa tatatggcta ccctgaccgg
     2641 acgttccgac ggtgcctctg tttttggcaa aaacaacaaa tatgcatttt ttccatctgc
     2701 tgctct
//
LOCUS       DATDNM010000655         3491 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_79162, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000655 DATDNM010000000
VERSION     DATDNM010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3491
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79162"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..511
                     /locus_tag="VI413_11150"
     CDS             <1..511
                     /locus_tag="VI413_11150"
                     /inference="COORDINATES: protein motif:HMM:NF012524.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEY6915224.1"
                     /translation="GYTVGKYNLMNDLLKGLTENPFGRRHILNLYQYADLSETKGLYP
                     CAYETLWSARKVDNEIYLDATLVQRSSDYLVANYINKTQYVALMLMVCSHLGYKPGVF
                     GHFVQNLHIYDRHFDAVNELLNREPLEVQPIIRLTENKPFSEFTVDDFIIENTDKINK
                     IKSKLELAI"
     gene            716..1213
                     /locus_tag="VI413_11155"
     CDS             716..1213
                     /locus_tag="VI413_11155"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005858889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEY6915225.1"
                     /translation="MSKISIIAAVADNYAIGKSNNLPWHLPADLKHFRQLTTGHAVVM
                     GKRTFESLPKGPLPNRRNIVLTSVMSEGVNQGYFEADSFEDAVYLCEHEEHVFIMGGA
                     TVYRQCIDKVDAMYITWIHQSFSADTFFPEIDFSKWEEVSREDHEADEQNPYPYSFTE
                     YKRKL"
     gene            1392..2429
                     /gene="asnA"
                     /locus_tag="VI413_11160"
     CDS             1392..2429
                     /gene="asnA"
                     /locus_tag="VI413_11160"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005678753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004071 - aspartate-ammonia ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HEY6915226.1"
                     /translation="MSYLIKPADYSPILDLQQTELGITKIKDFFQANLAAELRLRRVT
                     APLFVLRGTGINDDLNGTERAVSFPIKDVGDAVAEVVHSLAKWKRLTLGTYGIKSGYG
                     IYTDMNAIRADEELGNLHSLYVDQWDWERVMTAEERNIEFLKSIVRKIYASFLRTEYL
                     VCESFPEIKPYLPQEITFVHAEELRQMYPKLAPKERENEFTKIHKAVFIIGIGGALGD
                     GQKHDGRAPDYDDWSTVAENGLAGLNGDILFWNPILEMAFEVSSMGIRVDKTALLRQL
                     EIEGKQERKELYFHKRLIEGSLPLSIGGGIGQSRLCMFFLRKAHIGEIQSSIWPAQMY
                     KDCLKENIILM"
     gene            2596..3189
                     /gene="hisIE"
                     /locus_tag="VI413_11165"
     CDS             2596..3189
                     /gene="hisIE"
                     /locus_tag="VI413_11165"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEY6915227.1"
                     /translation="MNIDFQKTGGLVPAIIQDEWTSKVLMLGYMNEEALAKTQETGQV
                     TFFSRTKNRLWTKGEESGNFLNVVSITPDCDNDTLLVKVHPVGPVCHTGTDTCWGEKN
                     EGDIAFLKYLQDFITTRYNEMPEGSYTTSLFKKGVNRMAQKVGEEAVETVIEACNGTE
                     EGFVYEASDLIYHLIVLLTSKGLSLDTLANELKKRHK"
     gene            3259..>3491
                     /locus_tag="VI413_11170"
     CDS             3259..>3491
                     /locus_tag="VI413_11170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6915228.1"
                     /translation="MEKKLLIKYVDVDICQQDVAVLSNVQLEVHSGEFIYLLGKVGSG
                     KTSLLKSMYHEVPVSSGVAGVLGYDLTELKLNEV"
BASE COUNT         1108 a          561 c          723 g         1099 t
ORIGIN      
        1 tggatacacc gtgggaaagt ataatttgat gaatgacctg ttgaaagggc tgactgaaaa
       61 tccttttgga cgccggcata ttttaaatct gtatcagtat gctgatttaa gtgagactaa
      121 gggcttgtac ccttgtgctt atgaaacact gtggagtgcc agaaaagttg ataatgaaat
      181 atacctggat gcaacgcttg ttcagcggag ttctgattat ttggtggcaa attatattaa
      241 taaaacccaa tatgtggctt tgatgttaat ggtatgttct catttagggt acaaaccggg
      301 tgtttttggc cattttgtgc aaaatctcca tatatacgac aggcactttg atgcggtaaa
      361 cgaattgctt aacagagagc ctctggaagt tcaaccaatc attagattga cggagaataa
      421 gccattcagt gaatttacgg tcgacgattt tattatagaa aatacggata aaataaataa
      481 aatcaaaagc aagcttgagt tagctatctg attatgtaca tagtcgaact ggttaaaatt
      541 tgtaccctta cttctaacat tgtggctgtt taatgcaaaa atatgtttta tttatacagt
      601 taaatgatat tctaaaagcg gatagtcgga atcgattatc cgtttttttt tgtagttttg
      661 caagcctgtg tcaaaagcac attattgata cgatagtttt attaatttat atattatgtc
      721 aaaaatttcg attattgccg ctgttgccga taattacgct atcggtaaat caaacaatct
      781 accttggcat ttgccggcag acttgaagca ttttagacaa ctcacaaccg gacatgctgt
      841 tgtgatggga aaacgtacat ttgaaagctt gccaaaaggt ccacttccaa acagaagaaa
      901 tatcgtgtta acttcagtta tgtccgaagg agtcaatcag ggctatttcg aagctgattc
      961 ttttgaagat gcggtgtatt tgtgcgaaca cgaagaacat gtgtttataa tgggtggtgc
     1021 cacagtttac agacaatgca ttgataaggt tgatgcaatg tacattacat ggattcatca
     1081 atcgttctct gcagatactt ttttccctga aattgacttc tcgaaatggg aagaagtgag
     1141 ccgcgaggat catgaagccg atgagcaaaa tccttatcca tattcattta cagaatataa
     1201 gcggaagtta taaaatgtaa taattatata gaaatgccat tttcaattcg agaatggcat
     1261 tttttaatgc atatatacat aatcaactac attttaatat atttttagct gtaaaattac
     1321 taaaatccat atcataatga ttatctttgt ttcaatttta aacaatagct aaaaaacata
     1381 aatcgattat catgagttat cttattaaac cggctgatta tagcccgata cttgatcttc
     1441 agcaaactga gttaggtatt accaaaatta aagacttttt tcaggcaaat ctggcggcag
     1501 aattacgtct tcgtcgtgta accgctccac tttttgtact tcgtggtaca ggtatcaacg
     1561 atgacttgaa tggtactgaa cgtgctgtta gtttccctat taaagatgtg ggcgatgcag
     1621 tggcagaagt ggttcattca ttagcaaaat ggaaacgcct tacgctgggt acttatggca
     1681 taaaaagcgg atatggaatt tacactgata tgaacgctat tcgtgctgat gaagaattgg
     1741 gtaatttaca ttcgctttat gttgaccaat gggactggga gcgtgtaatg actgctgaag
     1801 agcgcaatat tgaatttttg aaaagcattg tccgtaaaat ttatgcatca tttttgcgta
     1861 cagaatacct ggtgtgcgaa agttttccgg aaattaaacc atacttacca caggaaatta
     1921 cttttgttca tgccgaagaa cttcgtcaga tgtatcctaa acttgcacca aaagagagag
     1981 aaaatgaatt tactaaaatt cataaagctg tatttataat tggtattggt ggtgcgcttg
     2041 gcgacggtca gaaacatgac ggacgtgcac ctgattatga tgattggtcg acggttgctg
     2101 aaaatggatt agccggctta aacggtgata ttcttttctg gaatcctatt ttggaaatgg
     2161 catttgaggt ttcatctatg ggaattcgtg tagataaaac tgctctttta cgacagctgg
     2221 aaatagaagg aaaacaagaa cgtaaagagt tgtatttcca taaacgtttg atcgaaggtt
     2281 cattgccact ttcaattggt ggtggtatcg gacaatcgcg cttgtgcatg ttctttttac
     2341 gcaaagctca tattggcgaa atccagtcga gcatatggcc agctcaaatg tataaagact
     2401 gtttaaaaga aaatatcatt ttgatgtaag actttttatc tgagatacaa aatcccgaaa
     2461 tacatttagg tgtttttcgg gattttattt tctatacatg ctaacatttc aaacttttca
     2521 atcttttgca cctaattttg agctattttt tgtaatttcg cacattatta ataagataag
     2581 caaattcaaa atacaatgaa catagatttt cagaaaacgg gtggtttagt acccgctatc
     2641 attcaggacg aatggacatc taaagtgtta atgctgggtt acatgaacga agaagcatta
     2701 gccaaaactc aggaaaccgg acaggtaacc ttttttagcc gtacaaaaaa ccgcttgtgg
     2761 acaaaaggtg aggagagtgg taacttcctg aatgtggttt caattacgcc tgattgcgat
     2821 aacgatacat tgttggtaaa agtacatccg gttggcccgg tttgtcatac tggtactgac
     2881 acttgctggg gcgaaaaaaa tgaaggcgac atcgcttttc taaaatatct tcaggacttt
     2941 atcacaacgc ggtacaatga aatgccggaa ggatcgtata ccacttcgct tttcaaaaaa
     3001 ggagtgaacc gtatggcaca aaaagtaggt gaagaagccg tagaaacagt aattgaggct
     3061 tgtaacggta ccgaagaagg ttttgtatat gaggcttcag atttaattta tcacctcatt
     3121 gtgttgctta catcgaaagg attaagcctt gatacgttgg ctaatgagtt gaaaaaaaga
     3181 cacaagtaga tttacaattt atcaatttac aatttacaat tgggaattga aaattaatta
     3241 attggaaatt aaactcccat ggaaaaaaaa ctattgataa aatatgttga tgttgacatt
     3301 tgccagcagg atgttgccgt attgagcaat gttcagctcg aagttcattc aggtgaattt
     3361 atatatttgc tcggcaaagt tggcagtgga aaaacatcgc tgctcaaatc aatgtatcac
     3421 gaagttcctg tttcttctgg tgtggcgggc gttcttggct atgatttgac cgaattgaaa
     3481 ttaaatgaag t
//
LOCUS       DATDNM010000656         2781 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_79315, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000656 DATDNM010000000
VERSION     DATDNM010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79315"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(298..651)
                     /locus_tag="VI413_11175"
     CDS             complement(298..651)
                     /locus_tag="VI413_11175"
                     /inference="COORDINATES: protein motif:HMM:NF024953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEY6915229.1"
                     /translation="MKTEISKTNKIIAWVISGLLTALFLFSASGKLFLHPEQMEQIHL
                     GNWRVIIAIGEITSALLFLIPRTNKLGTILLSSYMGGAIIIHMTGGTSILMPVVILIL
                     VWLTGIIRNPELLKL"
     gene            complement(822..1577)
                     /locus_tag="VI413_11180"
     CDS             complement(822..1577)
                     /locus_tag="VI413_11180"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6915230.1"
                     /translation="MNKTLKSILIGLGIIIAILVLILAGFWLKMKSELKNMHVSETKE
                     VVSGVFAIKDSYVNMFMVKDSDNYIAIDAGADIKIVRNELNKLNIDSSKVVAVLFTHC
                     DGDHTAALSMFENAVVYLSRLEEQMINGKTAKMMFVHNSISRKDYNLLEDKQDLTMKN
                     THIKCIATPGHTPGSMCYVVNSRYLFVGDAFGLKDGKIDRPNKFFSADMKMAVQSLSK
                     IANLFNVQYIFTAHNGYSNDYKKAMTDWEKIQY"
     gene            complement(1624..2541)
                     /locus_tag="VI413_11185"
     CDS             complement(1624..2541)
                     /locus_tag="VI413_11185"
                     /inference="COORDINATES: protein motif:HMM:NF018649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HEY6915231.1"
                     /translation="MNLLLQIFHGIKWQLVANDDSVFGQVFNTWITVLLVSIVICFLV
                     GELTNNYSQVDKVWSLMPIIYSFITLSAFPSSPRIWLMTFLVTFWGLRLSYNFYRKGG
                     YNIIPWKGEEDYRWNILRQHPKLKGFRMVLFNLFFISFYQQVLILLFSTPLLLAAKNS
                     ELELTVLDFVAAGFMLLFILIETVADNQLFNFHLQKQHKVIPDGRFNESLSKGFMIDG
                     FWKYVRHPNFAAEQSIWISFYFFGVAASGNWFNWSLAGPVLLILLFVGSSDFTESISI
                     KKYPDYVNYKQEVPKFIPLSFRLKQRVKA"
BASE COUNT          959 a          488 c          429 g          905 t
ORIGIN      
        1 cctacaacca accggaccaa tatcatcttg ttgttgctca cattattttt attaatatcg
       61 gtgagccatt ttgtaaattt catagtagtg cttatttaat tgtaatgcta actttgaatt
      121 agcattgatt ttttctctga ttttaattat ataacaaata agtaagtgtt gtgttttaag
      181 ttttaccata agtaggagga aagccttgaa aacaaaaaag actatcagtt atgaatgata
      241 gtctttaaaa gattaaaaaa tgataataga attattttca ttccaatttt tgttgggtta
      301 taacttcaat aattccgggt ttctgataat tccggtaagc catacaagaa ttaaaataac
      361 taccggcatc aaaatactcg ttccaccagt catgtggatg ataatagcgc cgcccatata
      421 agaacttaac aaaatagttc cgagtttatt tgttctagga attaaaaaca ataaggctga
      481 ggtaatttct ccaatagcaa taattaccct ccaattgccc aaatgtattt gttccatctg
      541 ttcgggatgt aaaaataatt ttccgcttgc actgaataaa aacaaagcgg ttaataaacc
      601 tgatataacc caggcgataa ttttatttgt tttactgatt tctgtcttca taaaatttaa
      661 tttgaaattt aaataacaat ttttgtagta agtttccggg ttaaaaacat atctatcata
      721 aaattgttca acacttttgg agcgttgaac aattttagtc ggaattttct ttatgatatt
      781 aactaattaa atgactctat tttaggctgc gccacattca tttagtattg aattttttcc
      841 caatcagtca tggccttttt ataatcattg ctataaccgt tatgtgcggt aaaaatatac
      901 tgaacattaa aaagattggc aatttttgaa agcgattgaa cagccatttt catatcggca
      961 ctgaaaaatt tgtttggcct gtctatcttt ccatctttta atccaaatgc atcgccgaca
     1021 aagagatatc tgctattcac cacataacac atcgagcctg gagtatgtcc tggagtagca
     1081 atacatttta tatgtgtatt tttcatagtt aaatcttgtt tatcctcaag caagttataa
     1141 tctttacggg aaatactgtt gtgcacaaac atcatttttg cagttttacc attaatcatc
     1201 tgctcttcca gtcgcgatag ataaactacc gcattttcaa acatactaag cgctgctgta
     1261 tgatctccat cgcaatgcgt aaaaagtact gcaactacct tcgatgaatc aatattaagc
     1321 ttattgagct catttcgaac gattttgatg tctgctccgg catcaatggc tatataatta
     1381 tcgctgtctt tcaccataaa catattgaca tacgaatctt tgattgcaaa aactcccgag
     1441 actacttcct ttgtttctga aacgtgcata tttttcaatt ccgatttcat ttttagccag
     1501 aagccggcga gtattaaaac caaaatggca attataatac cgagtccgat taaaatactt
     1561 tttaatgttt tgttcataag tctttatatt taaaggtgta atataaattt gaatctaaaa
     1621 tatttaggct ttcacccgtt gtttcaatct gaatgacagg ggaataaatt ttggcacttc
     1681 ctgcttataa ttcacgtagt cgggatattt ctttatgcta atgctttcgg tgaaatcaga
     1741 actaccaaca aacaaaagaa ttagcaaaac cggccctgcc aacgaccagt tgaaccaatt
     1801 tcctgaagcg gccactccga aaaaataaaa tgaaatccaa atagattgtt ctgcagcaaa
     1861 attagggtga cgcacatatt tccaaaaacc atcgatcata aaacctttac tcaaggactc
     1921 attgaatctg ccatcaggaa ttactttatg ttgtttttga agatgaaaat tgaaaagctg
     1981 attatcggcc acggtctcaa tcagaataaa caaaagcata aagccggcag ctacaaaatc
     2041 caatacggta agttccaatt cggaattttt tgcagctaat aggagtggag tggagaaaag
     2101 caagatcaac acctgctgat aaaaagatat aaagaacaag ttaaacaaaa ccattcgaaa
     2161 acctttcagt ttagggtgtt ggcgtaatat attccagcgg taatcttctt cgcctttcca
     2221 aggaattatg ttatatccac cttttcgata gaaattgtaa cttaaacgga gtccccaaaa
     2281 agtaactaaa aaagtcatca gccaaatacg aggagaagaa ggaaatgcag acaaagtaat
     2341 aaagctataa atgatgggca taagactcca caccttatct acctgactat aattgttggt
     2401 taactcaccc actaagaagc aaataactat tgaaacaagc aatacagtta tccatgtgtt
     2461 gaaaacctga ccaaaaacag aatcgtcatt tgcaactaat tgccatttta ttccatgaaa
     2521 gatttgtaaa agtagattca tttttgttgt tataagattt accgaattaa acttgcttaa
     2581 tgctgtcgat taactaaaca actcgaacac taaatatgtt gaaaaaaata ttcaaaataa
     2641 aaagggaata aacattttgg ttcgtttcat ataattctcg tatttctctc caaaatagct
     2701 tacacattct ttttcatcaa gtttagaggt aaaataaaga aaaatggttg ctaataagga
     2761 tattatgagc aatgctattt g
//
LOCUS       DATDNM010000657         3088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1256101, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000657 DATDNM010000000
VERSION     DATDNM010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3088
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1256101"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2628
                     /locus_tag="VI413_11190"
     CDS             <1..2628
                     /locus_tag="VI413_11190"
                     /inference="COORDINATES: protein motif:HMM:NF017183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig domain-containing protein"
                     /protein_id="HEY6915232.1"
                     /translation="SFVAAATSKEDVVFTDYQPAISEVVDNDGFKHPGVGLTKELLEN
                     VRQKVRQKIEPWNTYFNAMLECPAASRSVSSKNQNASDPTKPLSDAFDSQPFNGRFIG
                     DGLTAYTQALLYFISGDEQYRRNAMHIIRIWSQMDISKYKYFSDAHIHTGIPLNRMVM
                     AAEILRYTDCQSEDLKWTENDTKNFVRNLITPVIENFQHSPNRFMNQHLYPLIGSISG
                     YIFTGNRSRYNEAVEWYTVNSTANNQGFNGSIKQLFRWVDQEDIVGKKVGEGNPVPGH
                     VQHVEMGRDQAHGGGDLTNTAIINRLLLAQGTKVDPLKGTASTSSNAVGPYEFLNDRM
                     LAAANYFWQFMLGYDTPWTPVAYSISPEGVVKDTYNSISANYKGRFQTANFWDFYAYY
                     TYTRKVDVSKIAPYYYEAFTKKLTPDGPGWKNVDGGTDFWLYLPKEAEKDAITFLPNN
                     KSAGTLLELEDRYTKLDTNSATIHEGATSFIRFNATETGSKIAILSFGNGEKRYGVRF
                     RTNGVARLSIAGSTVVLPDTGNEWKYVAVNATIGNFEQVSVVGEAGVIVDIDHINTSD
                     EGLKRLKFKSGELDLKFTGYVGQPIRFDFSSNDSIKNDSITYKAINLPKGATFDVKTG
                     ELKWSPRNVCTTQMTVVITDGTTFVAKNVFINITHDRASAIKAIASAYDSAKIYSPKS
                     VRLFNERYKDAVKNIKKTKDAAFSEKLTALTLAAQNLKLTTPLCADDGSIDYSQKVVY
                     STCGKELKYWLDGVSSTFVGFYLAPKSYHILDFGADCRVSATAFGFQSNIFADRTAGS
                     VVFGSNDNENWIRITSQETAFTKNFQKIQVDDKFKNSKFRYLKIEKIHRYPDLLGGNT
                     SHLFELSEFRIYGQCHEIE"
BASE COUNT          914 a          560 c          676 g          938 t
ORIGIN      
        1 tcatttgttg cagctgccac atcgaaagaa gatgttgttt ttaccgatta tcaaccggct
       61 atcagtgaag ttgtcgataa tgatggattt aaacatccgg gcgttggcct gaccaaagaa
      121 ttgcttgaaa atgtaaggca gaaagtccga cagaaaattg agccatggaa cacctatttt
      181 aatgcaatgt tggaatgccc ggccgcatca agatctgtaa gttccaaaaa tcagaatgcg
      241 tccgacccta cgaaaccatt gtcggatgct tttgatagcc agccattcaa tggacgattc
      301 attggtgatg gattaacggc ttatacgcaa gcgttattgt attttatcag cggcgatgaa
      361 cagtaccgac gtaatgcgat gcacatcatt cggatttggt ctcaaatgga tatttctaaa
      421 tacaagtatt tttctgatgc tcatatccat accggcattc cattgaacag aatggtgatg
      481 gccgcagaaa tattaagata taccgattgt cagtcagagg atttgaagtg gaccgaaaat
      541 gatacaaaaa actttgttag gaatctcatt actccggtaa ttgaaaattt tcagcatagc
      601 ccaaaccggt ttatgaatca gcatctttat ccactgattg gatctatttc gggttatatc
      661 ttcaccggaa acagaagccg gtataacgaa gcggtggaat ggtacacggt aaatagtact
      721 gctaataatc aaggattcaa tggctcaatt aaacagcttt tccgctgggt tgatcaggaa
      781 gatattgttg gcaaaaaagt aggagaaggt aatcctgttc ccgggcatgt tcagcatgtg
      841 gagatgggca gggatcaggc tcatggcggg ggcgatttaa ccaatactgc cataattaac
      901 cgactgcttt tagctcaggg aacaaaagtt gatccattga agggtacagc ctctacttct
      961 tcaaatgctg ttggacccta tgaattttta aatgacagaa tgttggcagc ggccaactat
     1021 ttctggcaat ttatgcttgg ctacgatact ccatggacac cggttgcata ttccatatct
     1081 cctgagggcg ttgtaaaaga tacttataac tccatttctg ctaattacaa gggcagattc
     1141 caaacggcca atttctggga cttttatgca tattatactt acacccgaaa ggtggatgtg
     1201 tcgaagatag caccttatta ttacgaagca ttcacaaaaa agttgactcc cgatggaccg
     1261 ggttggaaga atgtggatgg cggtaccgat ttctggcttt atctgcctaa agaggccgaa
     1321 aaagacgcaa ttacattttt gccaaacaat aaatctgccg gtactttgct tgaacttgaa
     1381 gaccgttaca caaagctgga tactaattcg gcaactatcc atgaaggagc cacctctttt
     1441 attcgtttca atgccaccga aaccggaagc aagattgcta ttttgagttt tggtaatggc
     1501 gaaaaaagat atggtgtacg attcagaacc aatggggttg ccagactttc tattgctggt
     1561 agcaccgtag tgttgcccga taccggtaat gagtggaaat atgtggctgt aaacgccact
     1621 atcggtaatt tcgaacaggt gtcggtagtg ggtgaagcag gagttatagt tgatattgac
     1681 cacattaaca cctcggatga agggttgaaa aggttgaagt ttaagtcagg agagttggat
     1741 ctgaaattca caggctatgt aggtcaacct atccgttttg atttttcttc aaatgattcc
     1801 ataaagaatg acagcataac ttataaagct atcaacttac caaagggtgc aacctttgat
     1861 gtcaaaacag gtgagctgaa gtggtcaccc cgaaacgtat gtactacgca aatgactgtt
     1921 gttattaccg atggaaccac ttttgttgca aaaaatgtat ttataaatat cactcacgac
     1981 agggcttctg ccataaaggc cattgcctcg gcgtatgatt ctgcgaagat ttattcaccg
     2041 aaatctgtcc gattatttaa tgagagatat aaagatgctg tgaagaacat aaaaaaaacg
     2101 aaggatgctg cattcagcga gaaacttaca gcattgacgt tagctgctca aaatttaaaa
     2161 ctgacgactc cattgtgtgc cgatgatgga agtattgact acagccaaaa ggtggtttat
     2221 tctacctgcg gaaaagaact aaagtattgg ttggatggtg tttcgagcac ttttgtaggt
     2281 ttctatttag cgccaaagtc atatcatatt ctcgattttg gggcagattg cagagtttcg
     2341 gcaacagcat ttggttttca aagcaatata ttcgctgatc gcactgcggg ttccgttgtg
     2401 tttggttcga acgataatga aaactggata agaattacgt cgcaggaaac tgcatttaca
     2461 aagaactttc aaaaaataca ggtggatgat aagtttaaaa actcgaaatt ccggtatctg
     2521 aaaattgaga aaatacatcg gtaccccgat ctgttgggtg gcaatacaag tcacttgttt
     2581 gaactcagtg agtttcgaat ttacggacag tgtcatgaaa tagaataatt tgatttttgg
     2641 gctgggtata tttgatattc tgctcaaata atcgtttgtc ggatgttctt aaaccacgct
     2701 cgtaaaaaat ccggggttgg gtgttccttt ttatgtacta catcatttaa ggaaactttt
     2761 gaaatagatc attcgttctt gcttatgtta ctctatgtta gatttaattt ccttccgagt
     2821 taaagccaaa atccctgcaa aattctcacc cgtcccgaaa aattagaccc tattaattct
     2881 tgctttgtac aatagttggt aaggctgttc cgcttaacgg cttttttttg ataattaaat
     2941 tcgtcgtaaa acgagaattg gttttgtttg cttgttgttt tagtgaatat cctgagtttt
     3001 acgactaatt gacttcttgt gcttgggttt taatgctaac tcttaatttt atgtaatatt
     3061 ttttatggct tgtgtggtat tttgaatt
//
LOCUS       DATDNM010000658         3142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1147213, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000658 DATDNM010000000
VERSION     DATDNM010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3142
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1147213"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1223)
                     /locus_tag="VI413_11195"
     CDS             complement(<1..1223)
                     /locus_tag="VI413_11195"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEY6915233.1"
                     /translation="MYAIITISIVAIIVLFFGSIQKKGPLLPIVYIGLTVAFILNLLC
                     WNKSVHYYNEMLIADNFSIAFNAVLIFTTLLVFIFAPVYYKPVKRPLEDIYALILFAL
                     VGSLIMTAFGNLLMLFVGIETLSLSLYILAGSKKFDPNSNEAAMKYFLTGSFASGFLL
                     FGIALIYGASGSMNLEEIKQYVILNQGNMPGMLNIGLLLLAIGMTFKIGAAPFHFWAP
                     DVYEGSPTLITTFMATVGKVAAIAAFFRLMQSSFGEVESIWKTTLTVFSIATILIGNL
                     SAFYQDNVKRMFAYSGIAHAGYMLIAIIALKQDAAGVLLLYSMSYTIATITAFAVLIL
                     VREETGTFSIKAFNGLAKQNPTEAFAMTIAMLSLAGIPPLIGFAAKYNLFVSAIEQGN
                     LPLVIVAIIGSMISV"
     gene            complement(1244..2668)
                     /locus_tag="VI413_11200"
     CDS             complement(1244..2668)
                     /locus_tag="VI413_11200"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEY6915234.1"
                     /translation="MIIILLLIIPLFSSLLLFTGKLGKHSRNFALVASLVEFAVTVVA
                     GYAFTFADNKILNLSLNLKQLLDIDIIIYIDAVSLMMVMLTSLLIPVIIASNNDREVR
                     NHNFYALILLMEMALIGVFTSSEMVLFYIFWELAMMPIFLITAIWGGENRKKISVKFL
                     IYTVVGSFAMLIAILYLYTLTTTPHSFSFESFYQLKLPYEVQVPVFLAFFLAFAIKIP
                     LFPFHSWQAETYNVSPVQGSMILAGIMLKMGLYGIIRFILPICPDVVANGSLIFLPLI
                     LFGVIYGAIIAIRQPKLKKMIAFVSLSHVGIIALGLLSNNHYGVEGAVLQMFSHGVNV
                     VGFFLCYQMIVIRTGTDMIDDLGGIAKVAPKFATIFMIILLANVALPLTNSFVGEFLI
                     LLGVFQFNKTIAIIAGLTIILGAVYMLRMYQKIMYGPKNAATEKFADLTTGEVMLFVP
                     IIVSIFLVGIYPSFVLQLLQGAVK"
     gene            complement(2674..>3142)
                     /locus_tag="VI413_11205"
     CDS             complement(2674..>3142)
                     /locus_tag="VI413_11205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915235.1"
                     /translation="KLFSETQGFDNFLSPVFEKANSLVVVSEHALDVQAEWLIFLVPL
                     LIIAALVFISYKRFVNDKELSEPTGLSKVPAGKFYFDEIYDFCVVKPLGFISDIFREL
                     IDQTIINSFVNAVGNGTLFVGKKLRLLQTGNVGFYLVIMVLSIIAILFFNIIL"
BASE COUNT         1119 a          682 c          578 g          763 t
ORIGIN      
        1 tacacactaa tcattgagcc aataatagcc acaataacaa gcggcaagtt tccctgctca
       61 atagccgaaa caaataaatt atattttgct gcaaacccaa tcaacggagg aattccggcc
      121 agcgaaagca tggcaatggt catggcaaaa gcctcagtag gattctgttt tgccagccca
      181 ttgaacgctt tgatagaaaa agtcccagtt tcttctctaa ccagaataag caccgcaaaa
      241 gcagtgatag ttgcaatggt atacgacatc gaataaagca gtagcacacc tgcagcatcc
      301 tgtttcaggg caataatggc aataagcata taaccggcat gtgcaatccc cgaatacgca
      361 aacatccgtt tcacattatc ctgataaaaa gccgaaaggt taccaatgag aatggtagcg
      421 atagaaaaca cggtaagcgt tgttttccag attgactcca cttcgccaaa actggactgc
      481 attaagcgga aaaatgcagc aatagccgcc actttaccca cggtagccat aaaagtggta
      541 atcagcgttg gtgagccttc gtatacgtcc ggcgcccaaa aatgaaacgg tgccgccccg
      601 attttaaacg tcataccaat agccagcaac agcaaaccga tattcagcat accaggcata
      661 ttaccctggt tcaaaatcac atattgcttg atttcttcca ggttcatgct tccgctggca
      721 ccataaatga gggcaattcc aaacaacagg aagcctgatg caaacgaacc ggtaagaaag
      781 tatttcatag cagcttcatt ggagttggga tcaaactttt tactaccggc cagaatataa
      841 agcgaaagcg aaagggtttc aatacccaca aacaacatca acagatttcc aaaagctgtc
      901 ataatcagac tacccaccaa tgcaaaaagt attagtgcat aaatatcttc tagtggacgt
      961 tttactggtt tataatacac cggagcaaaa ataaacacca gtaatgtggt aaaaatcaat
     1021 actgcattga aggcaatact aaaattatct gcaatcagca tctcattata gtagtgaaca
     1081 gatttgttcc aacacaataa attgagaata aaagccactg taagcccaat ataaacaatg
     1141 ggtaaaagcg gtcctttctt ttgaatagag ccaaagaaaa gaacaataat agcaacaata
     1201 gaaatggtaa ttatggcgta cataaatctg ttgggttata tatttatttt actgctccct
     1261 gaagcaattg caatacaaac gaaggataaa tacctactaa aaatatagaa actataatgg
     1321 gcacaaaaag cattacttca cccgttgtca aatcagcaaa tttctctgta gctgcatttt
     1381 tgggtccgta cattattttc tgatacattc tcagcatata aactgcaccc agaataatag
     1441 tcagcccggc aataattgca atggttttat taaactggaa aacacccagc aaaatcaaaa
     1501 actcgcccac aaaactgttt gtaagcggaa gcgccacatt ggccagcaga ataatcataa
     1561 aaatagtagc aaactttggt gcaaccttgg caattccacc caaatcgtct atcatgtcgg
     1621 ttccggtcct gattacaatc atttggtagc aaaggaaaaa tccaactaca ttcacaccgt
     1681 gcgagaacat ttgcaataca gcaccttcaa cgccatagtg attattcgaa agtaaaccca
     1741 gggcaatgat acccacgtgc gaaagtgaca caaaggcaat catttttttt aatttcggtt
     1801 ggcggatagc aataatggct ccgtaaatca ccccaaaaag tatcagcggt aaaaatatga
     1861 gcgatccatt tgcgaccaca tccggacaaa taggaagtat aaacctgatt ataccgtaca
     1921 atcccatttt gagcatgata ccggccagta tcattgagcc ctgaaccgga gagacgttat
     1981 aagtttcggc ctgccaggaa tggaacggga acaacggtat tttaatggca aaagccagga
     2041 aaaaagcgag aaagaccgga acttgcactt cgtaaggcag ctttagctga taaaaacttt
     2101 cgaaactaaa cgagtgcgga gtagtagtaa gcgtatataa ataaagaata gctatcaaca
     2161 tggcaaaact acctacaacc gtataaataa gaaacttgac acttattttc tttctgtttt
     2221 cgccgcccca aatagccgta atcaggaaaa ttggcatcat ggcaagctcc cagaaaatat
     2281 aaaaaagaac catttccgag gaggtaaaaa cgccaatcag agccatttcc atcaacagga
     2341 taagcgcgta aaagttatgg tttcggactt cccgatcgtt attggaagca ataataaccg
     2401 gaattagcaa agacgtaagc atgaccatca ttagcgaaac ggcatcgata tatatgataa
     2461 tgtctatgtc cagcaactgc tttaaattca ggctcagatt aagaatttta ttgtcagcaa
     2521 aagtaaaagc gtaacctgcc actaccgtaa cggcaaattc taccagcgaa gcaaccagcg
     2581 cgaagtttct actatgcttc ccaagtttgc ctgtaaacaa gagcaacgac gaaaataacg
     2641 gaataataag taaaagtatg ataatcatct cttttatagt ataatattaa aaaatagaat
     2701 ggcaataata ctgagcacca tgataaccag ataaaatcct acgtttccgg tttgcaacaa
     2761 ccttagcttt tttccgacaa acaacgttcc gttacccaca gcatttacaa agctgttgat
     2821 aatggtttga tcaatcaatt cacggaagat atcggaaata aacccaagcg gcttcacaac
     2881 gcagaaatca tatatttcat cgaaataaaa tttgcctgca ggcactttcg acaaacctgt
     2941 gggttcagac aattctttgt cgtttacaaa gcgtttgtaa ctaataaata ccaatgcggc
     3001 aataatgagt aacggaacca gaaaaatcaa ccattcggcc tgaacatcca atgcatgttc
     3061 cgatacgaca acaaggctgt ttgctttttc gaacactggc gacaggaaat tatcaaagcc
     3121 ctgcgtttcg gaaaaaagct tc
//
LOCUS       DATDNM010000659         2338 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_187325, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000659 DATDNM010000000
VERSION     DATDNM010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187325"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..118
                     /locus_tag="VI413_11210"
     CDS             <1..118
                     /locus_tag="VI413_11210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010539055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HEY6915236.1"
                     /translation="FVAIVGETEMNEGKVMLKNMKTGEQTLVSVEELLIRIC"
     gene            224..1090
                     /gene="purU"
                     /locus_tag="VI413_11215"
     CDS             224..1090
                     /gene="purU"
                     /locus_tag="VI413_11215"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEY6915237.1"
                     /translation="MKGNDNTAVLLMHCPDRPGILAVVTEFINQHKGNILYLDQYVNR
                     EEKVFFMRVKWELDAFQIPKEKIEEYFETLIASRFNMVFRLYFSDTKPRMAIFVSKMS
                     HCLYDLLARYAAGEWHVEIPLIISNHPDMESVARRFDIPYYVFPITKENKAEQEAKQL
                     ELLKEHGVTFCVLARYMQVLSADFIEHFPNRVINIHHSFLPAFAGAKPYHAAHERGVK
                     VIGATSHYVTSDLDAGPIIEQDVTHISHKDTVEELVKKGRDLEKIVLSHAVEKHIERK
                     ILAYKNRTIVFQ"
     gene            1141..>2338
                     /locus_tag="VI413_11220"
     CDS             1141..>2338
                     /locus_tag="VI413_11220"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6915238.1"
                     /translation="MEVTRLFDLPDNYLEKYPNQDAALACKREGNWLKFSIQEYVNSI
                     NNISYGMLKMGIEPGDKIGIVSSNRPEWNMLDFAIMQIGAVSIPIYPTISQDDYRHIL
                     NHAEMRMIFIEGKELLKKLKPIFDEATSLKYVFTFDKQEDEYPHLNELIESGSQNSQA
                     EKLAQIKAGIKENELATIIYTSGTTGYPKGVMLSHSNIVNQLKSLESIPAKWSNTALS
                     FLPLCHAYERMLVYLYQYLGMSVYYAESLGTIAENIKEINPTMMSCVPRLLEKIYDKL
                     YLSGKKLPLISKMLYYWAFNLATHYQLEGRSWSYNLKFKLADKLIYSKWRAAIGGNFD
                     IVVSGGSAIQPHIASFFSAIGMPVFEGYGLSETSPVIAVSQRGKHGRKFGTVGLPLPG
                     VEVKLGE"
BASE COUNT          763 a          522 c          473 g          580 t
ORIGIN      
        1 atttgtcgca attgttggcg aaactgaaat gaacgaaggc aaagtaatgc tgaaaaacat
       61 gaaaaccggc gagcaaacac tggtttcggt agaagaatta cttataagaa tctgctaaca
      121 agttcacgtt ttttcgtcta aaatctcaat tcagaaacaa cacaacaaca ataaaagaaa
      181 cactatcttt gcatttcgtt tattgtagaa aaaagaaaat tgaatgaaag gaaatgataa
      241 tacagcagta cttttaatgc actgccccga caggccgggg attctggctg tagttacgga
      301 atttattaat caacataaag gaaatatcct gtatctggat caatatgtaa accgcgaaga
      361 aaaagtattc tttatgcggg tgaaatggga actggatgca tttcagattc cgaaagaaaa
      421 aatcgaagag tatttcgaaa cacttattgc cagccggttt aatatggttt tcagacttta
      481 cttctcggac accaaaccac ggatggccat attcgtttcc aaaatgtcgc actgcttgta
      541 cgacttgctg gcacgatatg ccgcaggcga atggcatgtg gaaattccgc ttattatcag
      601 caatcacccc gacatggaaa gtgtggccag acgcttcgac ataccctatt atgtatttcc
      661 aattaccaaa gagaataaag ccgaacagga agccaaacaa ctggaactcc tcaaagaaca
      721 cggcgttaca ttttgtgttc tggcgcgcta catgcaagtc ctttcagccg actttattga
      781 gcatttccct aatcgggtta tcaatataca ccactcattc ctacctgctt ttgccggagc
      841 aaagccatac catgcagctc atgagcgcgg cgtaaaagta attggcgcaa caagccatta
      901 tgttacaagc gatttggatg caggtccaat tatcgaacaa gatgtaacac acatttcaca
      961 caaagacacg gtagaggaat tagtcaaaaa aggacgcgac ctggaaaaaa tagttctttc
     1021 acatgctgtt gaaaaacata tcgagcgcaa aattctggca tacaaaaata gaacgattgt
     1081 tttccaataa aaatcaaggg tctcgactcc tggcccccgc tcttaaataa aatttgcaac
     1141 atggaagtaa cacgtttatt tgatttaccg gataattatc tggaaaaata ccctaatcaa
     1201 gacgcagccc tggcctgcaa gcgcgaaggc aactggctaa aattcagcat tcaggaatac
     1261 gtaaactcca tcaacaacat cagctacggc atgttgaaga tgggtattga accgggcgac
     1321 aaaattggaa ttgtcagcag caaccgcccc gaatggaaca tgcttgattt tgccatcatg
     1381 caaattggcg ccgtatcaat cccaatctac ccaaccatta gccaggacga ttaccgccac
     1441 atactgaacc acgctgaaat gaggatgatt ttcatcgagg gaaaagagct actcaaaaag
     1501 ctgaaaccta ttttcgatga agccacttct ttaaaatacg ttttcacttt cgacaaacag
     1561 gaagacgaat atccccatct gaatgaactt attgaaagcg gcagtcaaaa ttcacaagca
     1621 gagaaactag ctcagataaa agccggaatc aaagaaaatg agttggccac tatcatttac
     1681 acctccggta ccaccggcta cccgaaaggc gtgatgcttt cgcacagcaa cattgtaaac
     1741 caactgaaaa gcctcgagtc aatccctgcc aaatggagca atacagcatt aagcttttta
     1801 ccactttgtc acgcctacga gcgaatgttg gtttacctat accaatacct cggcatgtca
     1861 gtttattacg ccgagagcct gggtaccatt gccgaaaaca tcaaagaaat taatcccacc
     1921 atgatgtcgt gcgtaccacg gctacttgag aaaatttacg acaaactcta tctgtcgggg
     1981 aaaaagctac cactcatcag caaaatgctt tactattggg ctttcaacct ggcaacacat
     2041 tatcaattgg aaggtagaag ttggtcgtat aatttaaaat tcaaactggc cgataaactc
     2101 atttattcaa aatggagagc agcaattggc ggcaatttcg atattgttgt ttcaggcggc
     2161 tctgctattc aaccacatat cgcgtctttc ttttcagcca ttggcatgcc ggttttcgaa
     2221 ggatatggcc tgagcgagac ctcaccggtc attgccgtta gccaacgcgg caaacatggc
     2281 aggaagtttg gaactgtcgg tttgccatta cccggtgtgg aagtaaaact gggagaac
//
LOCUS       DATDNM010000660         2020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2109741, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000660 DATDNM010000000
VERSION     DATDNM010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2109741"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..613
                     /locus_tag="VI413_11225"
     CDS             <1..613
                     /locus_tag="VI413_11225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HEY6915239.1"
                     /translation="KNRCVTYEPIAPVVADLNRISRDETIPKFATHLVYVTRAKYPND
                     MESKIIFSLLNKQPKRADTYWFVYLHRSDEPYQFRYTVKTYVPEKIFRLDIFSGFKQG
                     VHMDTFVHLICKDLEENGKVDLQSRYPSLRERKIEGDFRFVVVERIIRNLDLPPVKKT
                     ILTLYYMIKRFSTSDTQILDLDPSMVTLEYVPLKHLRTLDKKK"
     gene            complement(862..>2020)
                     /locus_tag="VI413_11230"
     CDS             complement(862..>2020)
                     /locus_tag="VI413_11230"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013547270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY6915240.1"
                     /translation="TKVFDYKHGEKDTTLSVMDSIRYMNHFMHSSFVAMEPESGQVKA
                     WVGDINFKYWQYDKVAQSKRQPGSTFKLFVYTAAMMHGKSPCDMMTDKPVTWTYDEKG
                     AKKSWNPRNANGNFMYYPVSLKNAFAQSINTIAVQLAQEVGIPEVIKYAHLLGVRTPL
                     EDKPSTCLGSSDVSLLELVNSYGTVVNEGVYHNPVLVTRIEDKDGNVIYEPKMEQRRV
                     IPYETAWLMTELLKGGMTEPGGTSQALWGWDLFHYNTDFGGKTGTSSNHSDAWFVGVT
                     PKLIGGAWVGGEHRSVHFRTGQLGQGSRTALPIFGTFMEKVLKDESLKQYRGKFPAKP
                     KEKISKDYSCHTYLRPDSTATDSTVLDEGVENIDELPAEEAVPTETNQSEE"
BASE COUNT          617 a          460 c          333 g          610 t
ORIGIN      
        1 taaaaaccgt tgtgttacct atgaaccaat cgcaccagtg gtggctgacc tgaacaggat
       61 aagcagagat gaaaccatcc ccaagtttgc aactcatctg gtgtatgtta cccgtgccaa
      121 atatccgaat gacatggaaa gtaaaattat tttttcactt ctgaacaaac aacctaaacg
      181 ggctgacaca tattggtttg tttacttgca cagaagcgat gaaccttacc aattccggta
      241 tactgtaaaa acctatgttc cggagaaaat attcaggctg gatattttct ccggcttcaa
      301 acagggtgtt catatggaca cttttgtaca cctgatttgt aaagacttag aagaaaatgg
      361 caaagttgat ttacaaagtc gttatccgtc actcagggaa agaaaaatag aaggagattt
      421 cagatttgta gttgtagaac gcatcattcg taatctggac ttgccgcctg tcaagaaaac
      481 gattctaacg ttatattata tgattaaaag attttcaacc tccgacacac aaattttgga
      541 cctggaccca tccatggtca cattggagta tgtaccactt aagcacctca gaacgttaga
      601 taaaaaaaaa taaatcatat ttgtgcctaa ctaaacagga tataatttta ggttatatcc
      661 tgtttagtaa caaacatttc accattcctc cccatatcaa caaaaaaata ctaacattct
      721 atctcttcat gatacaaaaa cttaaacaat tcaacccact tgtatccttc aaacttattt
      781 attgaaatga aacaacttaa tgctataaaa caagaaggag acacaaatat tgcatctcct
      841 tcttgtttta aactctttat tttactcctc tgactggtta gtttcagttg gaactgcttc
      901 ttcagcaggt aattcatcta tattttcaac accttcgtcc agcacagtag agtcagttgc
      961 cgtagaatca ggtcttaaat atgtatgaca gctataatct ttgctgattt tctcttttgg
     1021 tttggccgga aatttacctc tatactgctt caggctttca tctttaagca ctttttccat
     1081 aaacgttcca aatattggca aagcagttcg acttccctgg ccaagttgcc cggtgcgaaa
     1141 gtgtacgctc ctatgttctc ctcccaccca ggcaccacca atcaatttag gtgttacacc
     1201 aacaaaccac gcatctgagt gattagaaga agtcccggtt ttaccaccaa aatcggtatt
     1261 ataatgaaat aaatcccaac cccacaaagc ctgcgatgtt ccacctggtt ctgtcatccc
     1321 gccttttagt agttctgtca taagccacgc tgtttcgtaa ggaattacac gtcgttgttc
     1381 cattttcggc tcatatatca catttccatc cttgtcctca atacgtgtaa ccaaaaccgg
     1441 attatggtaa acaccttcgt ttacaactgt gccgtaagaa tttacaagct caagcaacga
     1501 aacatcagat gacccaagac atgttgatgg tttatcttct aagggcgttc ttactcccaa
     1561 caaatgagca tatttaatga cctccggaat gcccacctct tgcgccaact gaacagcaat
     1621 agtgttgata gattgagcaa acgcattttt caacgaaact ggataataca taaagttacc
     1681 gttagcattt cgcgggttcc atgatttttt cgcgcctttt tcatcataag tccatgttac
     1741 cggcttatct gtcatcatat cacaaggcga cttaccatgc atcatggcgg cagtatatac
     1801 aaaaagctta aaagtagaac ccggctgacg ttttgattgt gcaactttat cgtattgcca
     1861 gtatttaaaa ttgatatcgc caacccaggc ttttacctgc ccactttctg gttccatagc
     1921 cacaaaactg ctatgcataa agtgattcat ataacggatg gagtccatta cactcaacgt
     1981 agtatctttc tctccatgct tataatcaaa cactttcgtc
//
LOCUS       DATDNM010000661         3146 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1361758, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000661 DATDNM010000000
VERSION     DATDNM010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3146
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1361758"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1972
                     /locus_tag="VI413_11235"
     CDS             <1..1972
                     /locus_tag="VI413_11235"
                     /inference="COORDINATES: protein motif:HMM:NF012961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 9 protein"
                     /protein_id="HEY6915241.1"
                     /translation="QMNPASFTDRYDAFGKSGSNGIPDILDEARWGLDWLLKMYPAKE
                     VLYHQIAAEGQDNNSFRSPVENKIDNASGNVRPAFLATGKAQGLSDNKNQSTGIASIA
                     GKYSSAFGLGAEIFAKFNPNYADTLKSKALEVYKFGKKHPGTCQSIGNSAGLYEEDNW
                     ADDMELAANQLYRLTYEGNYLKEAADFGRMEPVAPWMCSDTARHYQWYPFINLGHYML
                     ANVENPRYQKEFGQNLHNGIQRMSLYAENNPFNVGVPFIRCSNNLVVALSTQCRLYRT
                     ITNDSTYIDMETGLVDWLFGRNPWGTSMIVGLPKIGDTPSQPFSSSKQNNQISASGGL
                     VSGPVQAKVIKSLKNAQQSKVDNYKRFQSDWATYHDENTDFITNTPTIDGTASLTYLL
                     STKQQEGVPSKTADNNQYTCGGITRTDVSQKQISLAFCGNEFADGYKTIRKTLKKLNI
                     KAAFFFTGDFYRNRKFKSVIKGLIDDQHYLGGNSDKQLLYCSWRNRDSLLVSKSQFLN
                     DIRANYAAMEKFGIKKNQTPFFLPSNEWYNDSISLWCKEIGIQLVSATPGTLSSADNS
                     LPEMRDRYFSTNEIYNKILQVESQQEGLNGDILLFHIGSDKRRQDKFYPRLYSLLIEL
                     SKAGYNFVDLYKATDVADKNLIISDKKQKRKN"
     gene            complement(2005..2080)
                     /locus_tag="VI413_11240"
     tRNA            complement(2005..2080)
                     /locus_tag="VI413_11240"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2043..2045),aa:His,seq:gtg)
     gene            2194..2880
                     /locus_tag="VI413_11245"
     CDS             2194..2880
                     /locus_tag="VI413_11245"
                     /inference="COORDINATES: protein motif:HMM:NF020296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEY6915242.1"
                     /translation="MKFYISNPELDSKIAEIRRTIRLSMNGIVSDQMKNSGIIYKRNY
                     GVSIPRIKEIAKVYSPNHDLAQRLWLLQIRETMIMATLLEPIDKFSPELAQSWVESFN
                     QIEIIEQSCMNLFCKLPFANKLVADWIQSNELWIQITGYILAARLVDKLSNSEIIEIV
                     NKATESSATSELHLYKSLALCLSRFCRKDKEVATYILKETEAFSQNSSIGQQYIYNEV
                     KQEMLFLGIS"
     gene            2930..>3146
                     /locus_tag="VI413_11250"
     CDS             2930..>3146
                     /locus_tag="VI413_11250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEY6915243.1"
                     /translation="MKEENSYESIKEVFTEYLKKHKHRKTPERYAILEHIYSYDGHFN
                     ADILFNKMKADYRVSLATVYNTLDLLLE"
BASE COUNT         1086 a          666 c          606 g          788 t
ORIGIN      
        1 tcaaatgaat ccggcatcat ttaccgacag atatgatgct ttcggaaaat caggctcaaa
       61 cggaattccc gacattttgg atgaagcaag atgggggttg gattggttgc ttaaaatgta
      121 tcctgccaaa gaagtattat atcaccagat tgcagccgaa ggccaggaca ataattcatt
      181 tcgttcgcca gttgaaaata aaatagataa tgcttcaggc aacgtccgtc ctgcttttct
      241 ggcaacagga aaagcacaag gcttatcaga caataaaaac caatcgacag gaattgcatc
      301 cattgcaggg aagtattcat ccgcttttgg attgggagca gagattttcg ccaaatttaa
      361 tcccaactac gccgacacac tcaaatcgaa agcactggaa gtgtataaat tcgggaaaaa
      421 acatccgggg acttgccaaa gcattggtaa ctctgcagga ctttatgaag aagacaactg
      481 ggcagacgat atggagctgg cagccaacca actttaccga ctgacttacg aaggcaatta
      541 cctgaaagaa gcagccgact ttggacgtat ggaacctgtc gcaccctgga tgtgctcgga
      601 cactgcccgt cattaccaat ggtatccgtt tatcaacctc gggcattaca tgcttgcaaa
      661 tgttgaaaat ccacggtatc agaaagaatt cggtcaaaat ctacacaacg gaattcaacg
      721 catgagttta tatgccgaaa ataatccgtt caatgtcggt gtaccattta tcagatgctc
      781 aaacaacctc gtcgtagcgc tgtcaactca gtgcaggcta tatcgtacca tcacaaacga
      841 ctcaacctac atcgacatgg aaacaggatt agtggattgg cttttcggac gaaatccatg
      901 gggaacaagc atgatcgtag gattacccaa aattggcgac actccttccc aaccgttctc
      961 ttcgtcaaag caaaacaatc aaatttctgc ttccggcggc ttagtcagcg gacccgtgca
     1021 ggcaaaagtc atcaaaagcc tgaaaaatgc acaacaatca aaagttgata actacaaacg
     1081 tttccagtct gattgggcta cataccatga cgagaataca gatttcataa caaacacacc
     1141 aaccattgat ggaacagcat cactcacgta tttactttcg accaaacaac aagaaggcgt
     1201 accttcaaaa actgccgaca ataaccaata cacttgtggt ggaattacac ggacagatgt
     1261 aagccaaaag caaatctcac ttgcattctg cggaaatgaa tttgccgatg gatataaaac
     1321 catccgaaaa acattgaaaa agctcaacat caaagcagct ttctttttta cgggtgactt
     1381 ctaccgaaac cggaaattca aaagcgtgat taaaggactg attgacgacc agcattattt
     1441 aggtggaaat tcggacaagc aattgctcta ttgctcatgg agaaaccgcg actctctgct
     1501 tgtttccaaa agccaattcc tgaacgacat aagggcaaat tacgccgcta tggaaaaatt
     1561 cggtatcaag aaaaaccaaa caccattctt cctgccatct aacgaatggt acaacgacag
     1621 tatcagcttg tggtgtaaag aaattggaat tcagctggtg agtgctacgc ccggaactct
     1681 ttcaagcgca gacaacagcc tgcctgaaat gcgtgacaga tatttttcaa caaatgaaat
     1741 ttacaacaag attttgcagg tagaatctca gcaagaagga ctgaacggag atatcttatt
     1801 gtttcacatt ggaagtgaca agcgccgaca ggataaattt tatccgcggt tatattcatt
     1861 attaatcgaa ttatcgaaag ccggatacaa ttttgtagac ctctacaaag cgacagatgt
     1921 agcagataaa aacctgataa taagtgacaa aaaacaaaaa aggaagaact aaattgttct
     1981 tccttttttg agcattttaa aaatgggtgg gagacggggc tcgaacccgc gactttcgga
     2041 accacaaacc gacgctctaa ccaactgagc tacaaccacc atgtttagcg agtgcaaaga
     2101 taatacagca attgattttg tgcaactttt tttcaaaaaa aacaagctat ttttacaagc
     2161 agctaattac caacgaataa aaaacagaat aaaatgaaat tttacatatc aaaccccgaa
     2221 ttagacagca aaattgcaga aataagacgc acaatccgcc tttcgatgaa cggaattgtg
     2281 tccgaccaaa tgaaaaatag cggaattatc tacaaaagaa attatggtgt ttccattccc
     2341 cgcatcaaag aaattgcaaa agtatactcg cctaatcacg atttagccca acgtctctgg
     2401 cttcttcaga tacgcgaaac tatgattatg gcaactttac tggaacctat tgataaattt
     2461 agtccggaat tagctcaaag ctgggtcgaa agtttcaacc agattgaaat aatagaacaa
     2521 tcgtgcatga acctgttttg caaactgcct tttgcaaata agcttgtagc agattggatt
     2581 caatcgaatg aactttggat acaaataacc ggttatattc tggcagcacg ccttgttgac
     2641 aagctaagca acagtgaaat tattgaaatc gtcaacaaag ccactgaatc atcagcaacc
     2701 agtgaattac atctttacaa atcattggca ctttgtttaa gtcgtttttg cagaaaagac
     2761 aaggaagtag ccacttacat tctgaaagaa actgaagcat tttcgcaaaa ttcatcaatc
     2821 ggacagcagt atatttacaa tgaagtgaaa caagaaatgt tatttttggg catttcatag
     2881 caaaaaacag cgtaaaagtt gtacttttgt tggtcccttt tttaccctaa tgaaagaaga
     2941 aaattcatac gaatccatca aagaggtttt cacggaatac ctcaaaaagc ataaacatcg
     3001 gaaaacaccc gaacgctatg ctattttgga gcatatatat tcgtatgatg gacatttcaa
     3061 tgctgacata ttgttcaaca aaatgaaagc tgactaccgt gtaagtctgg ctacggttta
     3121 caatacgctc gacttattgc tcgaag
//
LOCUS       DATDNM010000662         2964 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1041567, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000662 DATDNM010000000
VERSION     DATDNM010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2964
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1041567"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(184..711)
                     /locus_tag="VI413_11255"
     CDS             complement(184..711)
                     /locus_tag="VI413_11255"
                     /inference="COORDINATES: protein motif:HMM:NF016060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEY6915244.1"
                     /translation="MRKVFETVGRWISLAIDFFYPPFGKYMTIQFFRYGFTGAVNVGF
                     SLLLYFIIYNFVLRQQMLPLGLFTLSSHIAALVITFPFSNFFGFLLQKYVTFTESELR
                     GHVQLYRYFIIVFVNLGVNAVVLKILVDGFHFWTTPSQAAATFVCVLISYFSQKKFTF
                     KIPKGTAPNPKRGVR"
     gene            976..1764
                     /gene="rsmA"
                     /locus_tag="VI413_11260"
     CDS             976..1764
                     /gene="rsmA"
                     /locus_tag="VI413_11260"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009124765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEY6915245.1"
                     /translation="MTQVKAKKYLGQHFLKDMEVARRIAGSLTLDGHTSVLEIGPGMG
                     VLTQFLLQNPLIDLTAVELDGESVEYLHQHYPALNVIEADFLKMDLKNLFPGKFCIIG
                     NFPYNISSQIFFKMLDNKDSIPCLAGMIQKEVAERIAAPAGSKTYGILSVLMQAYYKI
                     EYLFTVHEHVFDPPPKVKSAVIRFTRNNVSQIDCNEQLFKTVVKTAFNQRRKTLRNSL
                     KPLGLGDSPIFADPLFNMRPEQLDVPAFIDLTNRIDTEIKSRSI"
     gene            1927..2853
                     /locus_tag="VI413_11265"
     CDS             1927..2853
                     /locus_tag="VI413_11265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018338737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEY6915246.1"
                     /translation="MKTFYKNSNGLVPCKNWEPDCWVHVEKPTDEEVKYLVDELKMPI
                     SFYNDIEDVDERPRIELEDGWTFIIIRIPHKIENNNVPFSTVPLGIIFKGEVFISICF
                     YSTEMIADFAQYTIRKNIDKSNNFDFVLRLLLSSSVWFLKYLKQINNDINSAEKKLEN
                     SIRNQELQTMLKIEKCLVYFTTSLRGNDVLTHRIKNYKDLRKACDPELVEDVEIELRQ
                     ALETTKIYSDILSGLMDAYASVISNNVNEIMKQLTSISIILMIPTLIASMYGMNVHNN
                     LEEAKYGFWIVLFISFLLSGLGVLLFRRKNWF"
BASE COUNT         1027 a          584 c          528 g          825 t
ORIGIN      
        1 ggcatctgcc gccaccaggc aagaagttgg tcgtaatgag taaatgtaat caacttatac
       61 gccaaaaacg aataagcagc aatcataata aaccatttca agaggacctt ccaaccacca
      121 aagaaaagtt taaaaacatg agtcttaccg ttattcatag ccactccaaa aaagaaaatt
      181 gagttacctt actcctcttt tgggatttgg agcagttcct tttggaattt taaaggtaaa
      241 ctttttctga gaaaaatagc ttattagcac acacacaaac gtcgctgctg cctgagatgg
      301 agtagtccaa aaatgaaaac catcaaccaa tattttcaaa acgactgcat taactccaag
      361 attgacaaat acaattataa aataacggta caattgtaca tgaccccgca attctgactc
      421 agtgaaggtt acatactttt gcaataagaa tccgaaaaag ttagagaatg ggaatgtgat
      481 tacaagtgca gcaatatgcg agctgagcgt aaaaagaccc aaaggcaaca tttgttgacg
      541 taatacaaaa ttatagatga taaagtatag caataacgaa aagccaacat tgactgcccc
      601 ggtgaaaccg tagcgaaaaa actgaatggt catatattta ccaaaaggag gataaaaaaa
      661 atcaatggcc agactaatcc aacgacctac agtttcgaat acttttctca tatttggaat
      721 gaaatcaata atgcagtggg ttaataaaac agaaaaagta ggataatcga acaattatag
      781 ctacttttgt gcgctattaa aaatagggtt ctttcgcaca agttgcaaag atacaatata
      841 agaatttaca ttttacaatt tataattccc aatttattta tttggaatta tttaacacaa
      901 aattcgaatt ctaaacaaat ttcccgcaga caataaccat tttcacaacg aatatgcccg
      961 acgactatca tagttatgac acaagtaaaa gcgaaaaaat acttgggcca gcacttcctc
     1021 aaagatatgg aagttgcccg tcgtattgcc gggagcttaa cgctcgacgg gcatacatct
     1081 gtacttgaaa ttggtccggg aatgggcgtt ctcacccaat ttttgttaca aaatcctctc
     1141 attgatctca cagctgtcga actagatggc gaatcggttg aatatcttca ccaacattat
     1201 cccgcattga acgttatcga agctgacttt ttgaaaatgg atttaaaaaa tctgtttccg
     1261 ggtaaattct gcatcatcgg taattttcca tataatattt ccagccaaat cttctttaaa
     1321 atgcttgaca acaaggattc aattccatgt ctcgccggca tgatacaaaa agaagtggcc
     1381 gaacgcattg cagctccggc aggaagtaaa acctacggta tactcagcgt actgatgcag
     1441 gcgtactaca aaattgaata tcttttcacg gtacacgagc acgtttttga ccctccgccg
     1501 aaggtcaaat cggctgttat tcgctttacc cgcaacaatg tgtcgcaaat tgactgcaac
     1561 gagcaactct tcaaaacggt agtgaaaaca gcctttaacc aacgtcgcaa aaccttacga
     1621 aattcgctga aaccattagg cctgggtgac agtccaatat ttgccgatcc gcttttcaac
     1681 atgcgcccag agcaattgga tgtgcctgca tttatcgatt tgacaaacag aattgatact
     1741 gaaattaaaa gccgcagtat ttaagatgaa ttgactacat atatttataa aatatagctc
     1801 aagactttgc gcaaaaatta aaaaattaat ccaactatgg acgactatca ttccgattta
     1861 ttgtaaacct gaatagaagg cttttattat gtgccctcta ttcaaaaagt atggaggaaa
     1921 aacaacatga aaactttcta taaaaacagc aacggattag ttccatgcaa aaactgggaa
     1981 cccgactgct gggttcacgt agaaaaacct accgacgaag aagtaaaata tcttgttgac
     2041 gagcttaaaa tgccaatatc tttttacaat gatattgaag acgttgacga acgcccgcgt
     2101 attgaacttg aggatggttg gacatttatt atcattcgca ttccgcacaa aatagaaaac
     2161 aataacgttc ctttttcaac agttccttta ggcattatat ttaaagggga agtttttatt
     2221 tcaatttgct tttacagcac tgaaatgatt gctgattttg cccaatatac aattcgaaaa
     2281 aatattgaca agagcaataa tttcgacttc gttctccgtt tgcttttgtc gtcaagtgtt
     2341 tggtttctga aatacctgaa acaaataaac aacgatatca attctgcaga aaagaagctt
     2401 gaaaattcta tccgcaacca ggaacttcaa accatgttga agattgagaa atgcctcgtg
     2461 tatttcacca cttcgctcag aggtaacgac gtcctgactc atcggattaa gaattacaaa
     2521 gatctgagaa aagcctgcga cccggaattg gttgaagatg ttgaaattga actacgccag
     2581 gcactggaaa caactaaaat ttacagcgac attttaagtg gattaatgga tgcatatgct
     2641 tcagttattt cgaataacgt aaacgaaata atgaaacaac tgacttcaat ctccattatt
     2701 ttaatgattc ctacattgat tgccagcatg tacggaatga acgtacataa caatctggaa
     2761 gaagcaaaat acggtttctg gatagtgctg tttatctcgt ttctgctttc ggggctcgga
     2821 gttcttttgt tccgacgaaa gaactggttc taaacaacca atgcttacct gcagtcaatc
     2881 tctctcgcgt attagcaaag cattaatcta aggattctaa atgaaaatcg cttatgtctg
     2941 aactaagaat tttttaccac gagg
//
LOCUS       DATDNM010000663         2001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1256546, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000663 DATDNM010000000
VERSION     DATDNM010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1256546"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(236..784)
                     /locus_tag="VI413_11270"
     CDS             complement(236..784)
                     /locus_tag="VI413_11270"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEY6915247.1"
                     /translation="MNFTAIDFETAHADFPCEIGLTRVVAGQITESKSWLIKPACYPY
                     MNPWNQRVHGISSANVSNAKTFEELWTELRLWLEDQYLVAHNAAFDMRVLRSVLAYYD
                     LAVPWAECFCSVSLSRKTWKHLPSHSLGVVSEYHNIQFNHHRAGDDVEACAKIALKAF
                     ETVEAENVSLGLKKLGVALKKL"
     gene            1041..>2001
                     /locus_tag="VI413_11275"
     CDS             1041..>2001
                     /locus_tag="VI413_11275"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009596251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HEY6915248.1"
                     /translation="MNNLKIGNLTARLPIIQGGMGVGISLSGLASAVANEGGVGVISC
                     AGLGLIYRHTAKDYMEACICGLKEELKKAREKSSGIIGVNIMMALTNFSDLVKTAIAE
                     KADVIFAGAGLPMDLPKYRTEGCTTKLVPIVSSARAAKIICEKWKTLYDYLPDLVVVE
                     GPKAGGHLGFKTNQLDDPNFSLEQLIPAVVKEVAVFEEKYNQEIPVIAAGGIYTGEDA
                     YKIMQLGAKGVQIASRFVTTHECDADIKFKESYLKASKDDVEIIQSPVGMPGRALKGE
                     FLEKVKQGLTAPKSCPYDCLHTCDYKKVPYCIIVALYNAYRGQM"
BASE COUNT          654 a          383 c          352 g          612 t
ORIGIN      
        1 tctcaaagta ttccaaaatc ccttctggca atattaattc caacaactga tgttcggctg
       61 atttcaatcc tgtctctttt tccatgagac aaaattatta tttttaatct aatgcacaca
      121 acttttccga ttgatcccat acaattagtt atttattgat aactatattt tcgactgaat
      181 tataaaaata gatttatgac caattgtcaa gccaactaac catctaatca accacctaca
      241 atttcttcag cgccacgccc aactttttca accccaaact aacattctca gcttcaacag
      301 tttcaaaagc tttaagagca atttttgcac atgcttcgac atcatcacct gcccggtgat
      361 gattaaactg aatgttatga tactcgctta caactcctaa tgaatggctt ggtaaatgct
      421 tccatgtttt cctggaaaga ctcacactgc aaaaacactc tgcccaagga acagccaaat
      481 cgtaatatgc caataccgaa cgcaacacac gcatatcaaa agcagcatta tgcgccacca
      541 gatattgatc ttcaagccat aatctcaact cagtccacaa ttcttcgaat gttttagcat
      601 tcgacacatt tgctgatgaa attccatgta cacgctgatt ccatggattc atatagggat
      661 agcacgccgg ttttatgagc catgatttcg actctgtgat ctgccccgct acaactcgag
      721 taagtcctat ttcgcacggg aaatcggcat gagccgtttc aaaatctatt gcagtaaaat
      781 tcattaattt caatttgata tttcgtttca aagatatata aattcagatg aataccagct
      841 tatagaacaa aattcagtca aaatattatt atatataacc acattattta ggagcatttt
      901 tattgataaa tttccaatat ttatacacat tcctataaaa aatacagttt cctgttaaat
      961 atagattaga tacacattga caaacgcttt ttttgggtaa ttatgagtac ttttgcacac
     1021 aaatagttaa aatgtgcaat atgaataatt tgaaaatcgg aaatcttaca gctcgtttac
     1081 ccattataca aggtggtatg ggtgttggaa tttctttgtc aggattagcg tctgcggttg
     1141 caaatgaagg gggtgtaggc gttatttctt gtgcggggct tggtcttatt tatcgccata
     1201 cagcgaaaga ctatatggaa gcttgtattt gtgggttgaa agaggaattg aaaaaggcaa
     1261 gagaaaaatc gtcgggaatt attggtgtaa acattatgat ggcattgaca aatttcagtg
     1321 accttgtaaa aacagctatc gctgaaaaag cagatgttat ttttgctggt gccggattac
     1381 caatggattt acccaaatac cgtacagaag gctgtaccac aaagttggtt cctatcgttt
     1441 cttcagcaag agctgcgaaa ataatctgcg aaaaatggaa aactctttac gactatctgc
     1501 ctgatttggt agtggttgaa ggtccaaaag caggtggtca cctgggtttt aaaactaatc
     1561 agttagacga tccgaatttt tctcttgagc aacttatacc agctgtagta aaagaagttg
     1621 ctgttttcga agaaaaatac aatcaggaaa ttccagttat agctgccggt ggaatctata
     1681 ccggtgaaga tgcatataaa attatgcaat taggtgccaa aggcgtacaa attgccagcc
     1741 gttttgtaac tacacatgaa tgtgatgctg atataaaatt caaagaatca tatttaaaag
     1801 caagtaaaga tgatgttgaa attattcaaa gccctgtagg aatgcctggc cgtgctctta
     1861 aaggtgaatt tttggaaaaa gtaaaacaag gtttaactgc accaaaatca tgcccttacg
     1921 attgcctcca tacctgtgat tacaaaaaag taccttattg cattatcgtt gctctataca
     1981 atgcatacag aggacaaatg g
//
LOCUS       DATDNM010000664         2683 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1470089, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000664 DATDNM010000000
VERSION     DATDNM010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1470089"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..734)
                     /locus_tag="VI413_11280"
     CDS             complement(<1..734)
                     /locus_tag="VI413_11280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4980 domain-containing protein"
                     /protein_id="HEY6915249.1"
                     /translation="MKKTIYFLLAGLLMVSASCNSQKKSTGDNSLESKVITYQVNTSF
                     ILLPIEEKAPEIQVNVQVASQKFNETYNVRLAQNKADYWMPLKVSKFKGKELTLTFSN
                     YKGSEQGISGIKESDKFDFDYDETYRPQFHFTPEYGWMNDPNGMVYLVGEYHLFYQYN
                     PYGNMWGNMHWGHAVSTDLVSWTYLPTVLTPDSLGAIFSGSAVVDANNTAGFGKNAIV
                     AIFTSAGKVQAQSIAYSTDKGRTFIK"
     gene            complement(955..1659)
                     /locus_tag="VI413_11285"
     CDS             complement(955..1659)
                     /locus_tag="VI413_11285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915250.1"
                     /translation="MKKTILLSLFCVAFLALNAQTMVISNGEDTGINWWQAGSTGVEY
                     VDWHPKEGNPSAKAMTIWISPNSDAWSGGGLSGLNINVSTYNKISVLVFKNVAGTVRL
                     ELQDGGPNQFVSANYTTPGVWQKLEFAIPAGMGNITTLLIAPFIDYNLSTIVGEQSRC
                     FWDDVIAFSGSTGLSNATTTKEIVKTEIFTMTGKLLETLNQSQKVPYSSMLKGMYILK
                     QTDVEGNIACSKISIK"
     gene            complement(1711..>2683)
                     /locus_tag="VI413_11290"
     CDS             complement(1711..>2683)
                     /locus_tag="VI413_11290"
                     /inference="COORDINATES: protein motif:HMM:NF027665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase domain-containing protein"
                     /protein_id="HEY6915251.1"
                     /translation="IRDGKGVFVRYTSPDLLSWTMISPLTDFDSDAQILECPDIFKMG
                     NKWYLVFSRINRDEHRKTFYRIADTPDGPWKICADASGHHETFDGLFLYAAKTATNGT
                     TRYVSGWCSTGQEVNGNNELDWAGTLVTHKLVQQPDGRLYPSIPDAVDKKFSKPINYA
                     KIKSSGNATGVDGNYTISSISGRSYAMFNRNTTPVKISLKIDASQSNSFGFSFGAGGS
                     MSEIYSVAFDLTSTNHYSIPVLFMNKESNFVTGSYSKELNFTPLIVPEDKIFNVKIII
                     EKSICILYVNDNVAFTNRIYKMDQNPWTIFADNGTIKISNFTINKIP"
BASE COUNT          805 a          503 c          498 g          877 t
ORIGIN      
        1 tatttgatga aagtgcggcc tttatctgtg ctgtaggcaa tgctttgagc ctgaactttt
       61 ccggcactgg tgaaaatggc aacgatggca ttctttccaa aaccggctgt gttatttgca
      121 tccaccaccg cgcttccaga aaaaatagct cccaaactat cgggggtaag cactgttggc
      181 aaatacgtcc acgaaaccag atcggtactt acggcatgtc cccaatgcat atttccccac
      241 atgtttccat aaggattgta ttgataaaaa aggtggtatt caccaaccag ataaaccatt
      301 ccgttggggt cgttcatcca gccgtattcg ggagtgaaat gaaattgtgg acggtaagtt
      361 tcgtcataat caaagtcaaa tttatcggat tctttaatgc cgctgattcc ctgctctgaa
      421 cctttataat tgctaaaagt aagggtgagt tcttttcctt taaatttgga gactttcaac
      481 ggcatccagt agtcggcttt attctgagcc aaacgtacat tataagtttc gttgaatttt
      541 tgagaagcta cctgcacatt cacctgaatt tcaggggctt tctcttctat tggaagcagg
      601 ataaacgaag tatttacctg ataggtaatg actttactct ctaatgaatt gtcgccggta
      661 ctttttttct gagagttgca actggcactc accatgagta gtcctgccag gaggaagtaa
      721 attgtttttt tcatatatat tttaaattgg gctaactgaa accgttgcaa aaatagagga
      781 agcatcatcg ttttactgtc aaatttgttg cattatcgtg taattttgat acaaactata
      841 ggctaaataa gggtatttca aaaatgtttt aatttatttg aaactatttc aaatccattt
      901 tgccaaacct atataaagtc ggacaaaatg gatagaatga aagaatgcaa atacttattt
      961 aatagatatt ttagaacaag cgatatttcc ctctacatcc gtttgtttaa gaatatacat
     1021 tcctttcaac atagatgaat aaggtacttt ttgactttga tttaaagttt ccaagagttt
     1081 gccagtcatt gtaaagattt cagttttgac aatttctttt gttgtcgttg catttgaaag
     1141 tcctgttgat ccgctaaaag caatcacgtc atcccagaaa cagcgacttt gttctcctac
     1201 tatggttgat aaattataat cgataaaagg agcgatgaga agagttgtaa tatttcccat
     1261 tccggcagga atcgcaaatt ctaatttttg ccagacaccg ggtgtcgtgt aattagctga
     1321 aacaaattga tttggaccac catcttgtaa ttccaaacga acagttccgg ctacattttt
     1381 gaaaaccaaa actgatattt tattataggt acttacattg atgttgagac cacttagtcc
     1441 accacctgac catgcatcgc tgttcggact tatccaaatt gtcatggctt tggctgatgg
     1501 attaccttct ttgggatgcc agtccacgta ttcaacacct gtagagccgg cctgccacca
     1561 gtttatgccg gtgtcttcac cgttactgat aaccattgtt tgtgcattca aagctaaaaa
     1621 tgcaacacaa aataatgaga gtaaaattgt ctttttcata aaattgtttt ttaattgtga
     1681 ttaaattgaa agtaactatt taaatctatt ttaagggatc ttattaattg taaagtttga
     1741 tattttaatt gttccgttgt cggcaaatat cgtccatgga ttttgatcca ttttgtaaat
     1801 ccgattggta aatgcaacat tatcattaac atacaaaata caaattgatt tttcaataat
     1861 tatcttcacg ttaaatattt tgtcttcagg aactattaat ggagtaaaat tcaactcttt
     1921 actgtaagat ccggtaacga agttagattc tttattcata aatagaacgg gaattgaata
     1981 atgatttgtt gatgttaaat caaaagcaac ggaatatatc tcagacatgc tgccaccggc
     2041 tccaaatgaa aatccaaaac tattggattg gcttgcatca attttcaaag aaatctttac
     2101 aggagttgtg ttacggttaa acatggcata gcttctgcct gatatggaag aaatggtgta
     2161 attcccatca acacctgtgg cgtttccgct tgattttatt ttagcataat tgattggttt
     2221 gctgaatttc ttatcaacag catcaggaat tgaaggatac aaacgaccat cgggttgttg
     2281 caccagctta tgcgttacta aagtgccagc ccagtccagt tcattattac cattcacttc
     2341 ctgcccggtt gagcaccaac ctgaaacata acgggtagtt ccgtttgttg cagtttttgc
     2401 tgcgtacaga aataagccat cgaaggtttc atgatgtccg gaagcatctg cgcaaatttt
     2461 ccatgggcca tcaggcgtgt cggctatgcg atagaatgtt ttgcgatgtt catctctgtt
     2521 gattcgggaa aatacaagat accatttgtt acccatttta aaaatatccg ggcattccag
     2581 aatttgagca tccgaatcaa aatcagtaag cggagaaatc attgtccagc ttaataaatc
     2641 aggtgaagta taacggacaa aaactccttt accatctcta att
//
LOCUS       DATDNM010000665         3220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1896516, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000665 DATDNM010000000
VERSION     DATDNM010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3220
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1896516"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3220)
                     /locus_tag="VI413_11295"
     CDS             complement(<1..>3220)
                     /locus_tag="VI413_11295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007216495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6915252.1"
                     /translation="NTPGVSTTGENDISAFDYTRFKTYLDQVFIPMAEYAISKGMYVI
                     MRPPGVCPEKIAVGDSYNKYLLKVWGYVSQHSKLRNNPGIMFELANEPVNILGTDGTY
                     GAGSQGNFDNLKKYFQAVVDTIRSNGSQNVLWVPGLGYQSLYKGYAVNPIEGSNIGYA
                     VHIYPGWFGSGSGYANFQKGWDDDIKPIANVAPICVTEMDWAPAKYNSSWGKDSTGVA
                     GGMGFGANFQKITDASKNVSWLLFTDPSLLAKYTGVPPAAGDTCTFLNDPQACPLPCF
                     NWYKEYATVNYPRSDYSYKSKSDNGNGTYTNPVIFGDFPDPDVIRVGNVYYMSTTTMH
                     LFPGATILKSYDLVNWEYCSNPLEKIESTDCYNLDGCNRYSHGQWASSLKYNNGKYYL
                     HFNTLDEGSYMLTATDPAGPWTKKKLPSSFYDAGLFFDDDGSTYVVYGIGNLNIAKVD
                     SNFNVIKSQAITYGTIQSGLDIKAQEGSHLYKINGYYYIYATTGGYYATQVALRSTSI
                     FGPYDEKEVFNSARVHQGALIQTQTGQWWTMLFADKGAYGRLPMLEPVTWVDNWPIVG
                     VNGAGVTTYTKPNVGKVYPMTNLPTNDNFRNYKFAPQWEWNHNPDNSKWSLIRRPGFL
                     RLATANVTDSIQRAKNTLTQRILGYPANSNMSYGTIKMHINNMAEGDVAGLCVFQEPY
                     AFIGVKQENGQKNIIMLNEGTKTQQVGPAVTDSVVYLRALVNYATSKVDFYYSADNVT
                     YTLFGNSLSMQYNLSIFVGNRFHIFNYATKALGGYVDIDWFSTEKDYTENKFFDNSFV
                     GYSEDALTLTDLKIDKTNIDILTGGSKSFTLTAVYKDGHTEDVTMSANYTISNPAVVN
                     IKNGQLLGKGNGTATITATYQGGLGNPITITLNINSTYFPLTKDLLNPSIYSSGTYNE
                     TTKTLITGQYGFGGWSYSSGIDISAYKYLVVKLASTTYSNAVFKLFDENNYWSTPSET
                     AFGSNKQIVVNLTTITKAKTTTKINTSHIYIAGIWSSGGVSIVLSDVYLTNNSDYSKP
                     TAVEDVPYMIYNENEPVDVYTIMGIRIRSKVLRKEAVRGLPRG"
BASE COUNT          911 a          703 c          613 g          993 t
ORIGIN      
        1 tcctctgggc aacccacgaa ctgcctcttt acgtaacact ttacttctga tacgtatacc
       61 cataattgtg tatacatcca ccggttcgtt ttcgttatag atcatgtaag gcacatcttc
      121 aacagcggtg ggttttgaat aatcactatt gttggtcaga taaacatcgc ttaatacaat
      181 ggagactcca cctgacgacc aaattccggc tatataaata tgcgaggtat taatcttcgt
      241 tgttgttttt gctttagtta tcgttgttaa attcactaca atttgcttat tcgacccaaa
      301 tgctgtttcg gaaggcgttg accagtagtt attttcatca aacagtttga acacagcatt
      361 gctataagta gtactcgcaa gcttcacaac aaggtacttg taagcagaaa tatcaatacc
      421 cgaactgtac gaccatcctc caaaaccata ttgaccggta atcagcgtct ttgtcgtttc
      481 gttgtaagtt cctgaagaat agatcgaagg attaagcaaa tcctttgtca acgggaaata
      541 ggtagaatta atattgagcg ttattgttat cggatttcca agtccaccct gataagttgc
      601 agtaatggtt gcagttccgt tgccttttcc aagcaattgt ccgtttttta tgtttactac
      661 cgccggattg gaaatagtat aatttgcact catagtaaca tcttcagtat gtccatcttt
      721 ataaacagct gtaagtgtga agctttttga accgccggtg agtatgtcaa tattcgtttt
      781 gtcgattttc aaatcagtta gagtcagtgc atcttcgctg taacccacaa atgagttgtc
      841 aaaaaatttg ttttccgtgt agtctttttc tgttgagaac cagtcaatat ctacatatcc
      901 gcccaacgcc ttggtggcat aattgaatat gtggaaccgg tttccaacaa aaatggataa
      961 attatattgc atgcttaaag agttcccgaa aagcgtatag gtcacattat cggcactata
     1021 ataaaaatcg actttacttg ttgcataatt aaccagcgca cgaagataaa cgaccgaatc
     1081 ggtaaccgca ggtccaactt gttgagtttt ggttccttcg ttgagcataa taatattctt
     1141 ctgaccattt tcctgtttca cgccaataaa tgcataaggt tcctgaaaca cgcacaaacc
     1201 ggcgacatca ccttcagcca tgttgtttat gtgcattttt atggtaccgt atgacatatt
     1261 tgagttcgca gggtatccga gaatacgttg ggtcagtgta tttttagctc gctgaatgct
     1321 atcggtaaca ttggcagtag ccaaccgcaa aaatcccgga cgacgaatca acgaccattt
     1381 tgagttgtcg gggttgtgat tccattccca ttggggtgca aatttgtaat ttctaaaatt
     1441 atcattagtt ggcaggttcg tcatggggta aactttccct acattgggtt ttgtgtaggt
     1501 tgttacgcca gcgccgttca ctcctactat tggccagtta tccacccagg taaccggttc
     1561 gagcattggt aaccgcccgt atgctccttt gtcagcaaaa agcatggtcc accactgacc
     1621 tgtttgtgtt tgaatcaaag ctccctgatg aacacgagca ctgttaaaca cctctttctc
     1681 atcgtacggt ccaaaaatag aagttgagcg caatgccacc tgtgttgcat aatatccacc
     1741 ggttgtggca tatatgtaat aatatccatt aattttatac aaatggctac cttcctgagc
     1801 cttgatatcc aatccggatt ggatagtgcc gtaagtaata gcttgacttt taatgacatt
     1861 aaagttgctg tctacctttg caatattcag attgccaata ccatacacaa cataagtact
     1921 tccatcatca tcgaagaata aaccggcatc gtaaaacgaa gaaggtaatt tctttttcgt
     1981 ccatggtccg gcaggatcgg ttgcagttag catataactg ccttcatcaa gggtattaaa
     2041 atgtaaataa tacttgccgt tattgtactt caaactactt gcccattgtc catgactata
     2101 cctgttacat ccatcaagat tataacaatc ggttgattca attttttcca acgggttact
     2161 acaatattcc cagttaacca gatcgtacga ttttaatatt gtagcgcccg gaaacaaatg
     2221 catagttgtg gttgacatat agtacacgtt acctactcgg atcacatctg gatcgggaaa
     2281 atcgccaaaa attaccgggt tggtatatgt tccgtttcca ttatcgcttt tcgatttgta
     2341 agaataatct gaacgtggat agttcacggt tgcatactct ttgtaccaat taaaacatgg
     2401 aagcggacaa gcctgtgggt cattcaggaa agtacaagta tcaccagcag caggtggcac
     2461 accagtatat ttagccaaaa gagaaggatc tgtaaataaa agccagctta catttttcga
     2521 agcatcagtt attttctgaa agttagcacc aaatcccata cctccggcta ctccggtact
     2581 gtcttttccc cacgaagaat tgtatttggc aggcgcccaa tccatttctg ttacacaaat
     2641 tggagcaaca ttggcaatcg gcttgatgtc gtcatcccaa cctttttgaa aattggcata
     2701 tcctgaacca ctaccaaacc atcccggata tatgtgtaca gcgtaaccga tatttgaacc
     2761 ttcgatagga ttaaccgcat agcctttgta caaggattga taccccaatc ccggcaccca
     2821 cagtacgttt tggctaccgt tcgaccgaat tgtatctacc actgcctgaa aatacttttt
     2881 gaggttatca aaatttccct gcgaacccgc accataggta ccatcagtgc ctaaaatatt
     2941 gactggttca ttcgcaagtt caaacataat tccaggatta tttctcaatt tcgagtgctg
     3001 tgacacatat ccccaaactt tgagaaggta tttattgtag gaatctccaa ctgcaatttt
     3061 ctccgggcaa actcccggag gtcgcattat cacatacatt cctttagata tggcgtattc
     3121 ggccattggt ataaaaacct gatcgagata ggttttaaac cttgtgtaat cgaacgcaga
     3181 aatatcgttt tcgccagttg tagatacacc cggtgtgttg
//
LOCUS       DATDNM010000666         3332 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_508470, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000666 DATDNM010000000
VERSION     DATDNM010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508470"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1661)
                     /locus_tag="VI413_11300"
     CDS             complement(<1..1661)
                     /locus_tag="VI413_11300"
                     /inference="COORDINATES: protein motif:HMM:TIGR03296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M6 family metalloprotease domain-containing
                     protein"
                     /protein_id="HEY6915253.1"
                     /translation="MRIFLRLILVFTISIFPISNIFAVRATPYPVTITQADGTKITFR
                     LRGDEHFHYKTTLDGYALVPDSKDILMYAQPDKKGNLISTNIKASDITRRSAKEKQLL
                     KTLTKSISISRVSQAQRIMRAPATTAATTPQKTFPLTGSPKSLVILVSFSDLGFITSN
                     PKTAFTNLLNQKGYSANGGTGSAKDYFRDNSMGVFDPQFDVAGPFTLPQKMEYYGKND
                     ASGDDVNPQQMVIDACTLAAASGVDFSQYDTDKDAIVDNVFIYYAGYNEAEGAPANTV
                     WPHRWSLNNYGTKFNNVSVFGYACTSELKYASGTSMCGIGTFTHEFGHVLGLPDFYNT
                     DNQDSFTLSDWDVMDAGPYLNFGRTPPSYSSYERFFLNWLVPTELKGGGNFSLETLGT
                     SNKAYLISQTANHNLNGASPSSSEFFMLENRQKTGWDTYLPGHGMLVTHVNYNAATWA
                     ANTPNNDPNAPGVEIVEADGIASENSFSGDPFPGTSKAAYFMPVLQDGSAIKRMAQNI
                     KETSGLITFHWDSIKVNVVPPVANIAKDTTYTSFKASWNAVDFATG"
     gene            complement(1904..2272)
                     /locus_tag="VI413_11305"
     CDS             complement(1904..2272)
                     /locus_tag="VI413_11305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004289767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family protein"
                     /protein_id="HEY6915254.1"
                     /translation="MNALYTILLLIVSNIFMVIAWYGHLKLQQTGVTHNLPLYGIVLF
                     SWLVALAEYAFQVPANRIGFIGNGGTFTLMQLKVIQEVVTLIVFVIFSSIVFKTGGLQ
                     WNHLAAFACLVLAVYFVFMK"
     gene            complement(2361..3110)
                     /locus_tag="VI413_11310"
     CDS             complement(2361..3110)
                     /locus_tag="VI413_11310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004309769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6915255.1"
                     /translation="MEEISKADLKILQSIKNKFKKGINDYRLIDNDDHILIGLSGGKD
                     SLALVELLGERMKIFVPRFKVTAVHITVENIAYQSDFEYLKSHCEQFGISFVHHATRF
                     DDTTDTRKSTCFLCSWHRRKALFAVAKELGCNKIALGHHLDDMTETLLLNLFYQGSFG
                     TMPPKLKMKKFDMTIIRPLALISEKEMKEMERIREYHKQIKNCPHEKDSSRRDAKNLI
                     TELEKWNPDVRQSIWAAMENIKTEYLPKKLN"
BASE COUNT          968 a          674 c          654 g         1036 t
ORIGIN      
        1 cccgttgcaa aatcaacagc attccaggat gctttaaaac tggtatatgt agtatcttta
       61 gcaatgttag caacgggtgg aacgacattg actttgatag aatcccaatg aaaagtaatt
      121 agtccgctgg tttctttaat gttttgtgcc atcctcttaa tggcactgcc atcctgtaaa
      181 acgggcataa aataagctgc tttcgaggtt cccggaaatg gatcgccgga gaatgagttt
      241 tcgctggcaa ttccatctgc ttccactatc tcaactcccg gtgcattggg gtcattgttt
      301 ggtgtgtttg cagcccaggt agctgcatta taatttacgt gggtaactaa catgccatgt
      361 ccgggcaggt aagtgtccca gcctgttttt tgtctgtttt caagcataaa gaactcagag
      421 gaagacggac ttgctccgtt cagattgtgg ttggctgttt gcgaaatcaa ataagcctta
      481 ttgctggttc ctaacgtttc caaactaaag ttacctccgc ctttcagttc ggtgggcaca
      541 agccagttta gaaaaaagcg ctcgtacgaa gaataagaag gaggggtgcg accaaaattt
      601 aaataaggac ccgcatccat tacatcccag tcggaaaggg taaaactgtc ttgattatct
      661 gtattgtaaa aatcgggaag tccgagtaca tgtccgaatt catgcgtaaa tgtacctatt
      721 ccgcacatgc ttgttccgga cgcatattta agttccgagg tgcatgcata tccgaaaaca
      781 gagacattat tgaacttagt tccgtaatta tttaacgacc aacggtgtgg ccataccgtg
      841 ttggcaggag cgccttcagc ttcgttatat ccggcgtaat aaataaatac gttatcaaca
      901 atcgcatctt tatcagtgtc atattgggaa aaatcgacac cacttgctgc ggctaacgta
      961 caggcatcga taaccatttg ctgaggattg acgtcatcgc cacttgcatc gtttttaccg
     1021 taatactcca tcttttgtgg tagggtaaac ggcccggcaa catcaaactg aggatcaaaa
     1081 actcccattg aattatcgcg gaaatagtct tttgcagaac cggtgcctcc gtttgcagaa
     1141 taaccctttt gattcagcaa attcgtaaaa gctgttttag ggttcgatgt gataaaaccc
     1201 agatcggaga aactcaccag aataaccaac gacttgggtg aaccggttaa tggaaatgtt
     1261 ttttggggag tggtagccgc agttgttgcg ggtgcacgca taatccgttg agcctggctt
     1321 accctgctta tgctgatgct ttttgtgagc gttttaagaa gctgcttttc ttttgccgac
     1381 cgcctggtaa tatcggaagc tttaatgttt gtactaatca gattcccttt tttatcgggt
     1441 tgtgcataca tcaatatatc tttgctgtcc ggtacgagcg catagccatc cagggtggtt
     1501 ttatagtgga aatgctcatc tccccgaagc ctgaacgtta ttttagttcc atcggcctgg
     1561 gtaattgtaa cgggataggg agttgcacgt actgcaaata tgtttgatat ggggaaaatt
     1621 gatattgtaa atacaagtat caaccttaaa aatattctca tataaaaatg tttagaaggc
     1681 aaaggtaact aaattctgaa tagctaaatg tgataattca gcctttatac agataaaaat
     1741 catgatctta ctggaagaaa acagtttatt tcctgaaaaa taaactcaaa caataggttg
     1801 aacgaacttc attcattgtt catttcatga tctgcaaaag ccttgctttt atgtaagttg
     1861 gcattacaac ccgcttgagg agtgaatgaa agtatcggct ttattatttc ataaaaacga
     1921 aatatacagc aagaaccagg caggcaaaag cagccaaatg attccactga agaccacctg
     1981 ttttaaaaac gatggaagag aatatgacaa atacaattaa tgtcacaact tcttgaatta
     2041 cttttagttg cataagtgtg aaagttccgc cgttaccaat aaaaccaatc cggtttgcag
     2101 gcacctgaaa agcatattcc gcaagtgcca ccaaccacga aaacaggacg atgccatata
     2161 aaggcaaatt atgcgttacg cccgtctgtt gaagttttaa atgaccgtac caggctataa
     2221 ccatgaaaat gtttgatact attaagagca gtattgtata taatgcattc atttttgtgc
     2281 tttagttttt ttttgtaaaa tatttcattc aatcatcaca ttaccacatc atcacatcat
     2341 cacattacct catcatcaca ttaattcaac tttttcggta aatactcagt tttaatattc
     2401 tccatggccg cccaaatgct ctgccgtaca tccggattcc atttttcaag ttctgtaatc
     2461 aggttcttag catcgcgacg tgatgaatct ttctcgtgtg gacaattttt aatctgtttg
     2521 tgatattctc tgatccgctc catttctttc atctcttttt ccgaaatcaa cgccagtgga
     2581 cgaataatag tcatgtcaaa ctttttcatt ttcaactttg gtggcattgt tccaaatgat
     2641 ccctggtaaa acaggttcaa cagcagagtc tcagtcatgt cgtccaaatg atgtcccagt
     2701 gcaattttgt tacagcccag ttcttttgcc accgcaaaca aggccttgcg tcgatgccac
     2761 gaacacagga agcaagtgga cttacgtgtg tcggtggtgt cgtcaaaacg cgttgcgtga
     2821 tgaacgaatg aaatgccaaa ttgttcacag tgacttttca gatattcaaa atccgattgg
     2881 taagctatat tctcaactgt aatatgaact gcagtaactt tgaaacgcgg aacaaagatt
     2941 ttcatacgtt cgcccagcaa ttcaaccaat gccagagagt ctttacctcc cgatagtccg
     3001 ataaggatat gatcatcatt gtcaatcaac cggtaatcgt taatgccttt tttgaatttg
     3061 ttttttatgc tttgaagtat ttttaaatct gctttgctta tttcttccat gtttcattta
     3121 ttttttagga gcacaaaatt actataatca atgcaattct gatcaatgtg gggcaatgta
     3181 ttcggttttt tatcattttt tgatgaattc aactgcttgt tatcttgttt attaagcaaa
     3241 gaagctacaa ataaatgaca aaaaatagat aattttttgc ttcagatatt tgcaaattct
     3301 caaaaacgca ctatctttgc accgcaattg ag
//
LOCUS       DATDNM010000667         2296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_828608, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000667 DATDNM010000000
VERSION     DATDNM010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_828608"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1052)
                     /locus_tag="VI413_11315"
     CDS             complement(<1..1052)
                     /locus_tag="VI413_11315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008772161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY6915256.1"
                     /translation="MNIKEYISDNKNRFFEELFSLIRIPSVSSHLHRQPEIRQCAEKW
                     CEILFESGVDTAEIMATEGNPVVFASKLINPAYPTIMIYGHYDVMPAEPLELWTSNPF
                     EAEIRDGKIFARGADDDKGQSFMHAKAFEYLVKTNQLKCNVKFLLEGEEEIGSPSLEK
                     FCNENKELLKCDTILVSDTSMLSAQTPSITTGLRGLAYWEIEVTSASRDLHSGIFGGA
                     VANPIMELAKILATLTNEDGKITIPHFYDDVEEVSDYERELIAKIPFDEEEYKKNLNI
                     KTVSGEKGYSTIERTGIRPALDICGIWGGYTGEGSKTVLPSKAFAKLSARLVPHQRQE
                     KIARLVSDYLIKIAPS"
     gene            1352..1960
                     /locus_tag="VI413_11320"
     CDS             1352..1960
                     /locus_tag="VI413_11320"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY6915257.1"
                     /translation="MENQYEVIVSTASHLFEQFGIRSVSIDNVCAELHISKKTFYNYF
                     PQKEDLVDAVLTYQRAATLEKYGKLLKNKNAIDSLILIIREIKKNVEHESLSMCYDLE
                     KYYPKINEKFELEKREGIRAGFEMNLRQGIEEGYYRDDLDVELISFFHSIQIKNTFEQ
                     MSQDSKKYSKKRLIDFFIDLMIHLIANEKGLKYMEENYNKTE"
BASE COUNT          705 a          373 c          447 g          771 t
ORIGIN      
        1 tttgagggtg caatttttat caaataatct gaaacaagtc tggcaatttt ttcctgtcgt
       61 tggtgtggaa ccagacgtgc agatagtttg gcaaatgctt ttgacggcaa tactgttttt
      121 gaaccttcgc cggtatagcc accccaaatt ccgcaaatgt ccagtgccgg tcgtattccg
      181 gtgcgttcaa tagtgctata gcctttttcg cccgaaacgg ttttaatgtt caggttcttt
      241 ttgtactctt cttcgtcaaa agggattttg gcaattaact cacgttcata atccgaaact
      301 tcttccacat catcgtaaaa atgtggaatg gtgatttttc catcttcgtt ggttaatgtt
      361 gcaaggattt ttgctagttc cataatggga tttgccactg ctccaccaaa aattcccgaa
      421 tgcagatcgc gggaggcaga agtaacttca atttcccaat aagcaagtcc gcgcagcccg
      481 gtggttatgc tgggtgtttg cgcagatagc atgctggtgt cggaaaccag gatggtgtcg
      541 catttaagca attctttatt ttcgttgcaa aatttttcga ggcttggtga gccaatttct
      601 tcctcacctt cgagtaaaaa cttgacattg cattttaatt gattcgtttt gacaagatat
      661 tcaaatgctt tggcgtgcat aaacgattgg cctttgtcat cgtccgcacc acgggcaaat
      721 atctttccat ccctgatttc tgcttcaaat gggttagacg tccataattc caacggttcg
      781 gcaggcatca catcgtaatg tccgtatatc ataatagtag ggtaggcggg attgatcaat
      841 tttgaagcaa atacgaccgg attgccttct gttgccataa tttctgctgt gtcaaccccg
      901 gattcaaata atatttcgca ccacttttca gcacattggc gaatttccgg ttggcgatgc
      961 agatgcgaac ttacacttgg gatgcggatc aggctgaata attcttcaaa aaaacgattt
     1021 ttattgtcgg agatatactc ttttatattg atatccatat tgatttgcta tttttttgtt
     1081 gtattttaat tcaaaactca ataaaaatac gaaatgtttt attaaaactt cgttatttat
     1141 tcaataattg aacatttttt atttcgcttt tgttttgttt aggaaactca gaaactttaa
     1201 aactataata gtttccaaga agtgatattt atttgtttgt ttattaggcg catatgtatc
     1261 tgatttagtt ctgagatata aatatatctg tgtttttgat atacaagcca atattttata
     1321 taattttgca cggatttaat taaatatata catggaaaac caatatgaag taatagtcag
     1381 tacggccagt catttgtttg agcagttcgg gatacgaagt gtttctatcg acaatgtgtg
     1441 tgctgaatta catatttcaa aaaaaacctt ttataattat ttccctcaga aagaagattt
     1501 ggtagatgcc gttttgacat atcaacgtgc tgcgacttta gaaaaatacg ggaaactgtt
     1561 gaaaaataaa aatgcaattg attcgctaat tcttatcatt agggagataa agaaaaatgt
     1621 ggagcacgag tcattatcaa tgtgttatga cctggaaaag tattatccga agattaatga
     1681 gaaatttgaa cttgaaaaaa gagaaggaat tcgggccgga tttgaaatga atttacgtca
     1741 ggggattgaa gagggttatt accgggatga tttggatgta gaactgattt ctttttttca
     1801 ttcaattcaa ataaaaaata cattcgaaca aatgagtcag gatagcaaga aatactcaaa
     1861 aaaacggtta attgactttt ttattgattt gatgattcat ctcattgcca acgaaaaagg
     1921 attgaaatac atggaagaaa attataacaa aactgaataa gagttgtact caaaaataaa
     1981 tatagtctaa ttggtgtgtt tgatgagcat ttcaactaat taaaatcttc tttcatcggg
     2041 taaaaacagg atttcaacga ttttattttt atagtcctgt taaaacagaa taattttgca
     2101 ttataatgta aatgaaaaag tattaatttc taaataattt aaaaattgtg aaacagttta
     2161 gtagaacatt tgtattggca gctgctttga tgtgcgtgtt gcctacagct ctggtacaag
     2221 cgcaggatac gttaaccgtg tctttgtcga aagcactgga aatagctatg agcgaaagcc
     2281 cgacgataaa agtggc
//
LOCUS       DATDNM010000668         5238 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_80641, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000668 DATDNM010000000
VERSION     DATDNM010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5238
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80641"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1591
                     /locus_tag="VI413_11325"
     CDS             <1..1591
                     /locus_tag="VI413_11325"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6915258.1"
                     /translation="TDPQTGHFNLDIPLNLSDVSRVEILQGSSARVLGPNAFSGAINI
                     VTESNKKRGLNAELTAGSYNTFGQSVSGNVGNDKFNTFASVSHKSSAGYMANTDFDLS
                     SAYIQSVLKTSNAGKFDLQLAGQLKDFGENGFYSLKYPNQREANKAFFTALDWGLSKG
                     DFSYSAQASWKRHYDRYELNHGAVAGYKYHLTDVTGGRLSGSYKSIIGKTTVGLSVRN
                     EHIFSNSLGLAMSSPDSVINPFESNFYFKKSYNRTVYNGMIDHSVSVGRWYFSAGVAT
                     SYSEDFKSTTYGGFDIAYSMNDDVKVYASANSASRLPTFTDLFFSNPAQQGNPALKPE
                     QSKTIEFGTKMNQKAWGLNADIFYRKGENVIDWVKLNSSSAKYEAMNLSSVNALGGDF
                     TFDYRFTNLFVKRAAFSYSYLNLDKAAVGFDSKYALDYLKHKITLTVDHSIYKKLSAS
                     WKLGYLDRSGSYDANTIIGSPAIITNYTPYTNVDCRLLWADKHFDVFGDVNNILNTKY
                     ADYGGLTQPGINFNVGVRLKL"
     gene            complement(1717..3348)
                     /locus_tag="VI413_11330"
     CDS             complement(1717..3348)
                     /locus_tag="VI413_11330"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HEY6915259.1"
                     /translation="MAKEFKYQETFPLGKDKTEYYLLTKEHVSVSEFDGHEILKVEPE
                     ALTVLARAAMRDCSFLLRPAHQRQVAAILSDPEASENDKYVALTMLRNAEIAAKGILP
                     FCQDTGTATVYAKKGSNVWTNGTDEEALSKGIYETYTEENLRYSQNAALNMYDEVNTG
                     TNLPAQIDLVAGHGNEYKFLFIAKGGGSANKSYLFQETKALLNPTSLEKFLTEKMKTL
                     GTAACPPYHIAFVIGGTSADACMKTVKLASTKYYDELPTEGNELGQAFRDVEMEQKIL
                     KQAQASGFGAQFGGKYFAHDVRIIRLSRHGASCFVGMAVSCSADRNIKGKINKDGVWI
                     ERMEDNPGALIPEELRNEGEGNAVKIDLNLPMKEILATLSKYPVATRLSLNGTIVVGR
                     DIAHAKLKELIDAGKPLPQYVKDHPIYYAGPAKTPKGMPSGSFGPTTAGRMDSYVDLF
                     QENGGSLIMIAKGNRTQQVTDACKKYGGFYLGSIGGPAAILAQQNIKKVECLEYPELG
                     MEAIWKIEVENFPAFILVDDKGNDFFKQIKPSMVC"
     gene            complement(3505..>5238)
                     /locus_tag="VI413_11335"
     CDS             complement(3505..>5238)
                     /locus_tag="VI413_11335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445284.1"
                     /note="decatenates newly replicated chromosomal DNA and
                     relaxes positive and negative DNA supercoiling; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase/topoisomerase IV subunit A"
                     /protein_id="HEY6915260.1"
                     /translation="QKGELQEQLFFTSLEKIFIENRIYKDKGFEDSTSQDEVIAHIDK
                     RLEPFKKDFIREIVRDDFIKLLEIKMMRITRFDSDKANDTLISIQKKIDEIDHHLANL
                     VDYTIAWYEGLKAKYGKDHPRLTEIRNFETIVASKVVEANEKLYVNYDEGFIGTSLRK
                     DEFVCNCSDIDDIIIFFKDGKYKIVKVADKIFVGKNILHLDVFKKNDKRTIYNAVYRD
                     GKTGPHYIKRFAVNGITRDKEYDITQGTAGSKVVYFTSNPNAEAEVIRVTLKPKPRLF
                     KMVFEKDFSDIAIKGRQSMGNLLTKNEVQKIALKTKGGSTLGGRQVWFDRDVLRLNYD
                     NRGEHLGEFLSEDTILVVSSKGTFYTSNFDLNNHYDKDILVIEKFDSNKVWTVALWDA
                     DQKFYYLKRFQLEPSAKPQNFLGDNPESRLILMSDVDYPRFEVIMGGNDAYREALVVD
                     AEEFIGVKSYKAKGKRLTTFEVETINELEPIRFAPPKEENTNGGEESGDNPEETEVSL
                     VVTEDTEESNSETNKATPETPKVEDTEEKSAKPKKEKTIKTIPNDSVLPDDIIDQGKE
                     LDDITGQLSLF"
BASE COUNT         1363 a         1074 c         1113 g         1688 t
ORIGIN      
        1 taccgaccct caaacgggtc acttcaacct ggacattcca ttgaatctat cagatgtcag
       61 tcgcgtggaa attttgcaag gctcgtcggc acgtgtactt ggcccaaacg cttttagcgg
      121 agcaataaac attgtaaccg aaagtaataa gaaacgtggg ttgaatgccg agctgaccgc
      181 cggaagctac aatactttcg ggcagtccgt ttcgggaaat gtgggcaacg ataaattcaa
      241 tacgtttgct tcggtttcgc ataagagcag tgcaggttac atggccaata ctgattttga
      301 tttgagcagt gcctatattc aatcggtttt aaaaacgagt aatgcaggca agtttgattt
      361 acaactggca gggcaactaa aggatttcgg agagaacggt ttttattcgc ttaaatatcc
      421 gaatcaacgt gaagctaata aggcattttt tacagcactt gactggggtt tgagcaaagg
      481 tgatttttcg tatagcgctc aagccagttg gaagcgtcac tacgacagat atgaacttaa
      541 tcatggggct gttgcaggtt acaaatatca cttgactgat gtcactggag gtaggctgtc
      601 ggggagttat aaatcgataa taggaaaaac aactgtcggg ctgagtgttc gaaatgagca
      661 tatttttagc aattcattgg gtctggctat gtcatcccca gattctgtta taaatccgtt
      721 cgaatcaaat ttctatttca aaaagagtta taatagaacg gtttataatg ggatgattga
      781 tcattcggta agtgtgggta gatggtattt ctcggcagga gttgccacaa gctacagtga
      841 ggatttcaaa tcaacgactt atgggggctt tgatattgct tattcaatga atgatgatgt
      901 gaaggtatac gcttcagcta actctgcatc tcgcttacca actttcaccg acttattttt
      961 ctcaaatcct gcccaacaag gcaatcccgc gttaaagccg gaacaatcaa aaacaattga
     1021 atttgggact aaaatgaatc agaaagcctg gggcttaaat gctgatattt tctatcgaaa
     1081 aggcgaaaat gtgattgact gggtgaagct aaactcttct tcggctaaat atgaagcaat
     1141 gaatttatcg agcgtgaatg cattgggtgg cgattttacc tttgattatc gtttcacgaa
     1201 tttgtttgta aaaagggctg catttagcta ctcttatttg aatcttgata aagctgcagt
     1261 tggttttgat tcaaagtatg cattagatta tttaaaacac aaaattacat tgactgtaga
     1321 tcattctatt tataaaaaac tatcggcttc gtggaagctg ggctacctcg atcgttcggg
     1381 aagctatgat gctaatacga taattggctc accggcaatt attaccaatt acacacctta
     1441 tactaatgta gattgccgtt tgctttgggc tgacaagcac tttgatgtat tcggagatgt
     1501 gaataacata ttgaatacga aatatgccga ttatggcggg ctgactcagc cgggaatcaa
     1561 ttttaatgtc ggtgtgagat taaagctata atcggaatca aaaaataacc tttctaacta
     1621 tctctcaaaa atttatcaat ctctctaatt tgcaaaaaga aatcggctgt ctaacaaatg
     1681 gacagccgat tttgatttaa cgcgagtagt ttctttctag caaaccattg atggttttat
     1741 ttgtttgaag aagtcatttc ctttgtcgtc taccaggata aacgcaggga aattttccac
     1801 ttcaattttc cagatagctt ccatgcctaa ttcaggatat tccaagcatt ccactttttt
     1861 aatgttctgt tgagccaaaa tagctgccgg accaccgatt gaaccaagat agaaacctcc
     1921 gtacttttta caagcgtcgg tcacctgttg tgtgcggttt cctttggcaa tcataatcaa
     1981 gctgccacca ttttcctgga ataaatctac atacgaatcc atacggccgg cagtagtagg
     2041 gccaaacgag cctgaaggca tgcctttagg cgttttagcc ggacctgcgt aataaatcgg
     2101 atggtctttt acatactgag gaagtggttt gccggcgtcg atcaattctt tcagtttggc
     2161 gtgtgcaata tcacgaccca ccacgatagt tccattcaat gaaaggcgcg ttgcaacagg
     2221 atatttagac aaagtagcca aaatttcttt cattggcagg tttaaatcta tttttacagc
     2281 gttaccttcg ccctcgttgc gtaattcttc aggaatcaat gcgcccggat tatcttccat
     2341 gcgttctatc caaacgccgt ctttgttgat tttaccttta atgttgcggt ctgccgagca
     2401 agaaacagcc atacctacaa agcaggaggc gccgtggcga gacaagcgga tgatgcgaac
     2461 gtcatgtgca aaatacttac cgccgaattg agcgccaaag cccgaagctt gtgcttgttt
     2521 caggattttt tgttccattt ccacgtcgcg gaaagcttgt ccaagctcgt ttccttcggt
     2581 aggcagttcg tcgtagtatt tggttgaagc cagttttacg gttttcatac aagcatcagc
     2641 cgacgttccg ccaataacga aagcaatatg gtacggagga caagccgcag tacccaaagt
     2701 tttcattttt tcggttagga atttttccaa tgaagttggg ttcaacaacg ctttagtttc
     2761 ctggaaaagg tatgatttgt tggcagagcc accacctttg gcgatgaaca agaatttgta
     2821 ttcgttacca tgtccggcta ccaggtcgat ttgcgcagga aggttggtgc cggtattcac
     2881 ttcgtcgtac atgttcaacg ccgcattttg tgagtagcgt aggttttctt ctgtgtatgt
     2941 ttcgtagatt cctttcgaca atgcttcttc atcggttccg tttgtccata cgttgctgcc
     3001 ttttttagca taaacggtag cggttcctgt atcctggcag aaaggtaaaa tgcctttagc
     3061 tgcaatttca gcgttgcgaa gcatggtcaa cgccacgtat ttgtcgtttt cgctggcttc
     3121 agggtcggag aggatagcag ccacttgtct ttgatgtgcc ggacgaagca aaaatgagca
     3181 gtcgcgcata gctgcacgag ccaatacagt caatgcttcc ggttctactt tcaggatttc
     3241 atgtccatca aattccgata ccgatacgtg ctctttggta agcaaataat attcggtttt
     3301 gtcttttccc agtggaaatg tttcctggta cttaaattct tttgccattt tatatatttt
     3361 aatcagttat aattgacgtt tgaaatgagc tgcaaaatta cggaaatttt tctgtaatca
     3421 attgttctgt tttgatattt tagccgttta aatacaattg acggggtgaa ctcaaagtca
     3481 ccccgtcaat cagaaaatgt tattttagaa caaggataat tgcccggtta tatcatccag
     3541 ctcctttccc tggtcgataa tgtcatcggg cagtaccgag tcatttggga ttgttttgat
     3601 tgttttttct ttcttcggtt tggctgactt ttcttcggtg tcttcaactt ttggagtttc
     3661 aggagttgct ttgtttgttt cagaatttga ctcttctgtg tcttcagtta ccactaaact
     3721 aacctctgtt tcttctggat tatccccact ctcttcaccg ccatttgtgt tttcctcttt
     3781 tggaggtgca aaacgaatcg gttccagttc gttgatagtt tccacctcga atgtggttaa
     3841 gcgctttcct ttggctttgt aacttttcac cccgataaac tcttcagcgt caaccaccag
     3901 tgcttcacgg tatgcatcat tgccacccat aatcacttca aagcgtggat aatcaacatc
     3961 agacatcaat attagccggg attcaggatt gtcgcccagg aagttttgag gtttagccga
     4021 tggctccagt tgaaagcgtt tcaggtaata gaatttttga tcggcatccc atagggctac
     4081 tgtccaaact ttatttgaat cgaatttctc aataaccaga atgtctttgt cgtaatggtt
     4141 attcaggtcg aaattgctgg tgtagaaagt tcctttgctt gatacgacca aaatagtgtc
     4201 ttcgctcaaa aattcgccaa ggtgttcccc gcgattatcg taatttaggc gcaatacatc
     4261 ccggtcgaac caaacctgcc ggccacccag cgttgatccg ccttttgttt ttagggctat
     4321 cttttgtact tcgttttttg tgagcaggtt acccatcgac tggcggcctt tgatggcaat
     4381 atcgctgaag tctttttcga aaaccatttt gaataatctc ggtttcggtt ttagcgttac
     4441 acggattacc tcagcttcag cattcgggtt tgaagtgaaa tataccactt ttgaaccggc
     4501 ggttccctgt gtgatgtcat attccttatc tcgcgtaata ccgtttacgg caaagcgttt
     4561 tatgtaatga gggccggttt ttccatccct gtaaacagca ttgtagattg tacgtttgtc
     4621 gtttttcttg aatacgtcga ggtgtaaaat gttcttaccc acaaatatct tgtcggctac
     4681 ttttacaatt ttatattttc cgtctttgaa gaaaatgata atatcgtcaa tgtcggaaca
     4741 attgcataca aattcatctt tacggagcga agttccgata aatccttcat cataattcac
     4801 gtagagcttt tcgttggctt ccaccacttt cgatgcaacg atggtttcga agttgcgaat
     4861 ttcagtcaga cgaggatgat cttttccgta tttggctttt aacccttcgt accaggcaat
     4921 ggtataatcc actaaattag ccaggtgatg gtcaatttcg tcgattttct tctgaatgga
     4981 aatcaacgta tcattcgctt tgtcggagtc gaatctggtg atacgcatca tttttatttc
     5041 gagcaacttg ataaagtcat cacgcactat ttcgcgaata aaatcttttt tgaatggctc
     5101 taatcgtttg tcgatatggg caattacttc gtcctgcgat gtgctgtctt cgaaaccttt
     5161 atccttgtaa atgcgatttt cgataaatat cttttcgagc gaagtgaaga acaattgttc
     5221 ctgcaattcg cctttctg
//
LOCUS       DATDNM010000669         2673 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1257496, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000669 DATDNM010000000
VERSION     DATDNM010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2673
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1257496"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..217)
                     /locus_tag="VI413_11340"
     CDS             complement(<1..217)
                     /locus_tag="VI413_11340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915261.1"
                     /translation="MDNYLEQFEQDIQEKPINWREIFEKIIINWKWFVLSAIIALIIG
                     VVYARKQDVVYELRSSVQIIDQTRSGQM"
     gene            complement(367..1188)
                     /locus_tag="VI413_11345"
     CDS             complement(367..1188)
                     /locus_tag="VI413_11345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HEY6915262.1"
                     /translation="MKNFILSILLVFFFTGCNAYKAVVYVQNAGNAVSYADSIPSVIP
                     DPTLKIGDLLIITVNSSTPESAMPFNLPLLPGSEGLKNYSNVSSNMSISNGGSGLQNY
                     LIDTHGDIIFPIIGKIHASGMTKTALADYLKNKIYPFYIKDEPIISIRYTNYKVSVLG
                     EVGHPGVFDIQNEKINIFEAIALAGDLSLFGKRDNVLLIREKANGKRETLRIDLRDAR
                     LIDSPYFYLQQNDVLYVQPNEPKSRSGFFSTAESLSLSVVGTLISLTTLIISLSK"
     gene            1825..2241
                     /gene="ruvX"
                     /locus_tag="VI413_11350"
     CDS             1825..2241
                     /gene="ruvX"
                     /locus_tag="VI413_11350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEY6915263.1"
                     /translation="MGRILAIDYGQKRVGLAVTDMLHITANGLDTVLAHEVLDYLAKY
                     IAKEPVEKFVIGLPKQMNGQESDSMQYIRPFVTGLQRRFPDIELVYVDERFTSVLAHK
                     AMLDGGLKKKDRQNKELVDKISATIILQSYLESQNY"
     gene            2298..>2673
                     /gene="def"
                     /locus_tag="VI413_11355"
     CDS             2298..>2673
                     /gene="def"
                     /locus_tag="VI413_11355"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010537701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEY6915264.1"
                     /translation="MILPIYTYGNAVLRKVAEPINADYSNLSSLINNMFDTMYHAEGV
                     GLAAPQIGLPIRLLVIDLAPFKEDDPELGAFKVVMINPEMLDRSEEQVAGEEGCLSIP
                     GIHETVLRAQKIKIKYVDTDFKE"
BASE COUNT          824 a          478 c          516 g          855 t
ORIGIN      
        1 tcatttggcc gcttcgggtc tggtcaataa tctgtacgga agatctcaat tcataaacaa
       61 catcctgctt acgggcataa accactccaa taataagagc aataatggca gataaaacaa
      121 accatttcca gttaatgata attttttcga atatttctct ccagttgatt ggtttttcct
      181 gaatatcctg ttcaaattgc tctaaataat tatccatttg tttggtgttc aatgtttagc
      241 gattattgtt tagcgtttgt tggagttgat ttactataaa ctacaaacta tttatccatt
      301 tgtttttgtg ttcaatgttt acgtttggag ttgatttatt attaaccaca aactataaac
      361 tattcactat tttgaaagac tgattatcaa tgtagtcagc gatataagcg ttccaaccac
      421 agaaagtgaa agggattccg ctgtgctgaa gaaacctgac cttgatttgg gttcattggg
      481 ctgtacatat agcacatcgt tttgttgcag gtaaaaatag ggtgaatcga tcaggcgggc
      541 atcccgtaaa tcaatacgga gtgtttcccg tttgccgttt gccttttcac ggataagcag
      601 cacattgtcg cgttttccga acaacgataa atcgcctgct aatgcgatgg cttcgaaaat
      661 attaattttc tcattctgaa tatcaaatac tcccggatgt cctacttccc ctaatacaga
      721 cactttgtaa ttagtatacc gaatggaaat aatcggttca tcttttatgt agaatgggta
      781 aatcttgttt ttcagataat cggcaagggc tgttttagtc attcctgatg catgaatttt
      841 tccgataata ggaaatataa tatcaccatg agtgtcgatt aaatagtttt gtagccccga
      901 accaccatta gaaatactca tattagatga cacgttgctg taattcttaa gtccttcgct
      961 gccgggtaat aagggtaggt taaaaggcat tgcggactct ggtgtgctgg agttgacagt
     1021 tataataagc aagtcaccaa tttttaaagt tgggtcaggt ataacagatg gaatggaatc
     1081 ggcatagctt acggcatttc cggcattttg cacatataca actgctttgt atgcgttaca
     1141 gcctgtaaaa aaaaacacca acaggatgga caaaataaaa tttttcacta ttcgtttttt
     1201 ttagaagata ttaagtaaaa ttgttttagc aaaccagctc aattttactg ctttgcagaa
     1261 ttactacaag cgcagaattg tatacagcac tttaatttgt aaataaatat gcagttttta
     1321 acgcaagtgc aaagatatat aaaaactttt aattttacga atttattcct aaaagcgagc
     1381 gggttcgatt cgtgtttttt tttagtaaat tcatctaatt acaacagtca caaaatggcg
     1441 taaacaacca ggataaagac taaattcagc ttcggtattc tttcgataca acatgctgtg
     1501 aagaattgta agcaccagga aaaagataat accgtattgt caatatgatt tctacctatt
     1561 cacccgtccc ataaattgat ggacaattaa tactaatact acgatattat atttttcctg
     1621 tttataatta ataggtaaat aaataatact gtttacattg gattggtaaa gggactccgt
     1681 aaggattaaa tgaggaaatt tcgtcgtaag acgcgtccaa aaactgtttt agagttaaat
     1741 aacaacacct tgaaaactct gcattacata tattttccca catgacctgt tttttgtacc
     1801 tttgccgttc aattcaagat aactatggga agaattctgg ctattgatta cgggcaaaaa
     1861 cgtgttggac tggcagttac cgacatgctt catatcacgg ccaatgggtt ggacaccgta
     1921 ttggcacacg aagtgcttga ttatctggcg aaatacattg ctaaagagcc ggttgaaaaa
     1981 tttgttatcg ggctgccaaa acaaatgaac ggccaggaat cagattccat gcagtatatc
     2041 cgtccttttg ttaccggcct gcaaagacgt tttccggata ttgaacttgt ttatgtagat
     2101 gagcgtttta cttcggtatt ggctcacaag gctatgctgg acggtggttt gaagaaaaaa
     2161 gaccgccaga ataaagaact ggtggataaa atttcagcta ccattattct gcaaagctat
     2221 ctggaatcac aaaattattg aactattcta ttattgtacg gacaggttgc gacctgtccc
     2281 taacttatta ctaaataatg attttaccaa tttacactta tggcaatgct gttttacgta
     2341 aagtagcaga gccgattaat gctgattatt ccaatttaag ctcattgata aacaacatgt
     2401 ttgataccat gtatcatgcc gaaggagttg gtttggcggc tcctcaaata ggtttgccca
     2461 tccggttgct ggtgattgac ctggcaccgt ttaaggaaga tgatcccgaa cttggcgctt
     2521 ttaaagttgt catgattaat ccagaaatgc ttgacagaag cgaagaacag gttgccggcg
     2581 aggaaggttg tcttagcatt cccggcattc acgaaacggt tttgcgtgca caaaagatta
     2641 aaatcaagta tgttgatact gatttcaagg aac
//
LOCUS       DATDNM010000670         5018 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_80995, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000670 DATDNM010000000
VERSION     DATDNM010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5018
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80995"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..635)
                     /locus_tag="VI413_11360"
     CDS             complement(<1..635)
                     /locus_tag="VI413_11360"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY6915265.1"
                     /translation="MKKYIVYNICFLLFLLLLPFGISSCLPPPVDEFDDTENGVVLEK
                     TDKVTALTPDSTVVVMTWNIRFGIGRGPWFGDACGYKVVYNSDEVLRNLQLLVDRIEL
                     IRPDILLLQEVDINSNRSGYTDQFTWLLNHTYFNYASYGSQWKAQFIPSDGLGRLQEV
                     NAIYSRWPITECTRTQLALRKDQIAIEKYFYERCCMVTSKVEIPGFEPLYVV"
     gene            complement(1080..4394)
                     /locus_tag="VI413_11365"
     CDS             complement(1080..4394)
                     /locus_tag="VI413_11365"
                     /inference="COORDINATES: protein motif:HMM:NF020337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CotH kinase family protein"
                     /protein_id="HEY6915266.1"
                     /translation="MSNNVSAIMDDSYNYSMWVEIYNPSTTYSYNQAAYYFTDKKSVP
                     LKWHPVSKSIVPGGFSVLWFERDERAGHASFKLDPEGGKLYMYNQFIQLIDSVIYPAQ
                     YRNISYGRQTDGGNNWVYFEDFSTGTSNNGKKTATVRCSNPVFATPGGFYPSTINVKF
                     VTPSAGDTIYYTLTNVEPTRQNGIRYVPGYVISLTHTAAVRAKCFSGSKLSSNVVTST
                     YFIGERDFQLPVVSIITNQANLTDNTIGIYVAGTNGLTGNGSNSPVNWNQDWDRPVNF
                     ELFDTANVCRLNQELDISISGGWSRLNAQKSLKISPRNKFGNNRLPYDLFPMNKPNRK
                     YKDIQLRNSGNDFGYSMMRDAFMESLIINRMDIDYLAYEPAVCFMNGVYYGIQNLRER
                     SSKEYIYSNYGYDEDDIHLLESAEIATDTSFTPLSNYISNNDITKADVYDKVCSMMDV
                     DNFANYMISQIYYGNTDWPDNNIKVWKKKAGGKWRWILYDTDFGYNLYDTNLHYHNSL
                     SMALGEKADDVLPAWSTLLLRRLVLNDTFRNKFIDRFCVQLSSTFETNRANHILDSMA
                     AKIQNEIVYHKAKWGSSRTLAADITNMKVFSANRPTTMLGFLSSRFVSSAAIQTVKLS
                     ANVAGASYKMNNEPVIDSNVSLKYFNGRTMALEARPVAGYKFKQWEISGASAATTVFA
                     MGSSWKYYDGSAIPAENWYSPAYADAAWKSGAAPLGYVSTGVATIISYGGVTANKYPT
                     AYFRKIINVTGLSSKSNFVITGFVDDGAAVYVNGTEIGRYNMPAGTLAFSTVATTYNN
                     GASFTLAIPQNLLKEGDNVIAVEVHQNAVNSSDMIFDMSLAYTQAGAPTVITTPVYTT
                     ALTKDIELKAIYEISSVNPDETPAVYINEVMGNNTLIADEAGGFDDYIELYNAGDKAV
                     NVAGWYITDMPVNRMLCQIPKTDSTKTNIPAKGRLILWADDEATQGILHVGLKLSKDG
                     ETLILSKKNALDNIVLVDSVSFTALGYNITYSRVPDGAANWMLRPATFNATNGMISAV
                     ESPQSEVQVYPTLVKENFTVNNAAGLMLTITDLTGKVVLQKKCMADHETTQVGFLQRG
                     MYILTVGSNSLKLIKM"
     gene            4737..>5018
                     /locus_tag="VI413_11370"
     CDS             4737..>5018
                     /locus_tag="VI413_11370"
                     /inference="COORDINATES: protein motif:HMM:NF040322.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HEY6915267.1"
                     /translation="MKNFILSFILLFAWSYSVAQQVERQNFKIMWYNVENYFDCVNDS
                     LTDDSEFLPGGMRGWNYNKYLTKQAHISKVITAIGGWEAPALVGMCEVES"
BASE COUNT         1452 a         1117 c         1009 g         1440 t
ORIGIN      
        1 acaacataaa gcggctcaaa gcccggaatt tcaactttag atgtcaccat gcaacagcgt
       61 tcgtaaaaat acttttcgat ggctatctgg tccttcctca gcgctagttg agttcgggta
      121 cattcggtaa tgggccaacg cgaataaatg gcatttactt cctgcaatcg tccgagtccg
      181 tcgctgggaa taaactgtgc tttccactgc gaaccatagg aagcataatt gaaataggtg
      241 tgattcaaga gccatgtaaa ctggtcggta tagccggagc ggttagaatt gatatccact
      301 tcctgaagaa gcaaaatgtc cggcctgata agctcaatcc ggtcaacaag caattgcagg
      361 tttctcaaaa cctcatccga attgtaaacc actttgtaac cgcaggcatc gccaaaccac
      421 gggccacggc ctatcccgaa acggatattc caggtcatta ccaccaccgt tgaatcgggc
      481 gtgagtgcag taactttatc tgttttttcg agaacaacac cgttctctgt atcatcaaat
      541 tcatcaacag gaggaggtaa gcaggaagag attccaaaag gtaataaaag caggaaaaga
      601 agaaaacaga tgttgtaaac aatgtatttt ttcatggtta agttgattac atgttatacc
      661 ccgataccgt tctgatggca ttcaacaacc acaatcctcc ggaccatggt gttttttgca
      721 cgtttaggca caatacacgc ctgtattgca atgctccgtt cccggccaaa caacaatttt
      781 attattcagc cacttatatc attcaatgga aaaaaggaaa gtatttactc cgcatgagaa
      841 ccggttcacg tcctcattat aaacagaata aatatattat aaaacaattc agggatagaa
      901 taagtttcag caaaatgatt gtaggatcgg tgggatttat gagcaagcca ggcggcaaac
      961 cgggaagata taatgtcgga tttatacatc aactgccgtc ccattttaca ggacggcagt
     1021 tgatatacat cttctcaata aaatcaagat acggcattag ttacttccac ttactgaagt
     1081 tacatcttaa tcaatttcaa actattactt cctaccgtca gaatatacat tccccgctgc
     1141 aggaatccaa cctgagtagt ttcatggtcg gccatacatt ttttctgcag cactactttt
     1201 cctgtcaaat cggtaattgt caacataagt ccggcggcat tattcacggt gaagttttct
     1261 tttacaaggg taggataaac ctgaacttcc gattgcggtg attccacagc ggaaatcatg
     1321 ccattggtgg cattgaaagt tgccgggcgc agcatccaat tcgcagcacc gtccggcacg
     1381 cgcgagtaag ttatattata cccaagtgcc gtaaacgaaa ccgagtctac aagcacaata
     1441 ttatccaatg cattcttttt ggacagaatc agcgtttctc catccttgct cagcttcagc
     1501 cctacatgta atataccctg agtggcttca tcgtcagccc agagtatcaa tcgtcctttg
     1561 gccggaatat tggttttggt agaatccgtt tttggaatct ggcaaagcat gcggtttacc
     1621 ggcatatcgg tgatatacca acctgcaaca tttaccgctt tgtcgccggc attatacagt
     1681 tctatatagt catcgaaccc gcctgcttca tcagcaataa gcgtattgtt acccattacc
     1741 tcgttgatat acacagccgg agtttcgtcc ggattaacag atgaaatctc gtaaattgct
     1801 ttcagttcaa tatctttagt caacgctgtg gtataaaccg gcgtggttat cacggttgga
     1861 gcgccggcct gtgtataagc caggctcata tcaaaaatca tatctgaact attaactgca
     1921 ttttgatgca cttccacggc aatcacattg tcgccttctt tcagcaggtt ttgcggaatg
     1981 gccaatgtaa atgaagcacc attgttataa gttgtggcaa cggtagaaaa agccagcgtt
     2041 ccggcaggca tgttgtagcg gccaatttcg gtgccattta catacaccgc cgccccatca
     2101 tcaacaaacc cggtaattac aaaattggat ttgctgctta gcccggtaac attaattatt
     2161 ttccggaaat aagctgtcgg atatttattt gcggttactc caccgtaact gataatagta
     2221 gccacacctg tactaacgta gcccaacggt gctgccccac tcttccatgc agcatcagcg
     2281 taagccggcg agtaccagtt ttcagccgga atagcgcttc cgtcgtaata tttccagctg
     2341 cttcccatag caaaaaccgt ggtcgcagcg cttgcaccag aaatttccca ttgcttgaac
     2401 ttataaccgg caacaggcct ggcctccagt gccattgtcc ggccattgaa atacttcagt
     2461 gaaacgttgg aatcaattac aggttcgtta ttcatcttat acgatgcgcc cgccacgttt
     2521 gcactcagtt tcacagtttg tatagctgct gagcttacaa aacggctgct caagaagccc
     2581 agcattgtag tcggcctgtt agccgaaaac actttcatat tggtaatgtc agcggccagg
     2641 gtccggctcg aaccccattt tgctttatgg tatacaattt cgttctgaat tttggcagcc
     2701 atactgtcca gaatatgatt ggcacggttc gtttcaaatg ttgatgaaag ctgaacgcaa
     2761 aagcggtcga taaatttatt gcggaaagta tcgtttaaaa ccaggcggcg aagcaacaag
     2821 gtagaccatg caggtaacac atcatcggct ttttcgccca gagccattga taatgagttg
     2881 tgataatgaa gatttgtgtc atacaaatta tagccaaaat cagtgtcgta caaaatccag
     2941 cgccatttgc caccagcttt tttcttccac actttaatgt tattgtcggg ccaatcggta
     3001 ttaccgtaat aaatctggga aatcatatag ttggcaaaat tatccacatc catcatggag
     3061 caaactttgt catatacatc cgctttggtg atatcgttat tgctgatata attgctcaat
     3121 ggagtgaagc tcgtatcggt tgcaatctca gccgattcaa gcaaatgaat atcatcctcg
     3181 tcgtatccgt agtttgaata aatatattct ttgctgctcc gttcccgaag attttgaatg
     3241 ccgtaataca caccgttcat aaaacaaacg gctggttcgt aagccagata atcaatgtcc
     3301 attcggttaa ttatcaacga ttccataaat gcatcgcgca tcatggaata accgaaatca
     3361 tttcctgaat tccgtaactg gatatcttta tacttccggt ttggcttatt catcggaaaa
     3421 agatcataag gcaagcggtt gtttccaaac ttgttgcggg gtgatatttt cagggatttc
     3481 tgtgcgttta aacgcgacca accaccggaa atagaaatat ccagttcctg atttaaacgg
     3541 cacacattcg cggtatcgaa caattcgaag ttaaccggac gatcccagtc ctggttccag
     3601 ttgacaggag aattagaacc gttaccagta agcccgtttg ttcccgcaac gtatatccca
     3661 atcgtattat ctgtcaaatt tgcctggtta gtaattattg aaaccaccgg aagctggaag
     3721 tcacgttcgc ctataaaata agttgacgta accacattgc ttgataattt ggaaccggaa
     3781 aaacatttgg cacgaacagc cgccgtatgt gtcagggaaa ttacataacc cggaacatag
     3841 cggattccat tttgccgggt tggttccaca ttggtaagtg tgtagtaaat ggtatcgccg
     3901 gctgatggag taacgaattt tacattaatg gttgaaggat aaaatccgcc gggagtggca
     3961 aaaacaggat ttgaacaacg taccgtggcc gtttttttcc cattgttgga agttcctgta
     4021 ctgaagtctt caaaataaac ccagttattt cctccatctg tctgtcttcc gtacgatata
     4081 tttcggtatt gggccgggta aataacacta tcaataagct gaataaactg attatacatg
     4141 tagagttttc cgccttcggg gtcaagtttg aaggaggcat gccctgcccg ttcatcccgc
     4201 tcgaaccaaa gaacgctgaa accacccggt acaattgatt tcgacaccgg atgccatttc
     4261 aacggcacac tttttttatc ggtaaaataa taggctgcct gattgtaact atatgttgta
     4321 cttggattat aaatctccac ccacatgctg taattatacg aatcgtccat aattgccgaa
     4381 acattatttg acatgatctc gttaatcctt aactgtgcgc ttaataaaag aggaaggaat
     4441 aataaactga tacaaaaaat tcttttcatt tgggaatgtg atttttacat attattagca
     4501 gtactcgatt tatccctcaa agataattca aattctggat atttattcac aaacaatgtg
     4561 tcggatacac acgattgcgc taaaatgata ttttaatcca cttttgtgcg atatatgtgc
     4621 ttttttcatt cagaaagcga atcttgtaac aaattcaaat tattatattt tttttctacc
     4681 tttgtacatc atgtaaaacc aatagctcac agcccacaac tgtatacaag tccggtatga
     4741 aaaattttat tctgtctttt attttacttt ttgcatggag ttattctgtg gcacaacaag
     4801 tcgaaaggca aaatttcaaa atcatgtggt acaatgtcga aaattacttc gactgcgtaa
     4861 acgattcact aaccgatgac agtgaatttc ttccgggcgg catgcgtggc tggaattaca
     4921 acaaatacct cacaaaacaa gcgcatattt ccaaagtcat tactgctatt ggtggctggg
     4981 aagcaccggc gctggtagga atgtgcgaag tagaaagt
//
LOCUS       DATDNM010000671         2243 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1257904, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000671 DATDNM010000000
VERSION     DATDNM010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1257904"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VI413_11375"
     CDS             <1..330
                     /locus_tag="VI413_11375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEY6915268.1"
                     /translation="ILAELGDHKVQYAELSKFPEVKRDLALLLDKNITFAEIEKIAFE
                     TERKLLKKVNLFDVYEGKNLEAGKKSYAVSFLLQDDSKTLTDTQIDGIMKKLQNNYET
                     KLGAKLR"
     gene            474..1709
                     /locus_tag="VI413_11380"
     CDS             474..1709
                     /locus_tag="VI413_11380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007658219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEY6915269.1"
                     /translation="MDKDLSFDGKILHTPYAKPDAYNALSMPVYNSAAYEFETAEDME
                     AAFTGRSANHTYSRITNPTVQYFEDRVRTITGAFSATALNSGMAAITNAIITVAQTGS
                     NIVTSRHLFGNTYSFFASTLAAFGVEIRFCDLTNADEVDSHIDANTCALFLEIITNPQ
                     LEVADLKAISKIAKQKGVPVIADTTIVPFCAFKAKDFGVNIEIVSSTKYISGGATGLG
                     GLIIDYGNFDWLSSPKLHVMAKEFGPAAFTAKLRKEIHRNMGAYMTPQVAYMQTLGME
                     TLTIRYERATDTCLKLVEKLEALPEVESVNYTGLPSNKYYELSRTQFGEKPGAMFTFN
                     LASREACFSFMNKLKLVKRATNLFDNKTLAIHPASTIYGTFTAEIRKEMNVSDKTIRI
                     SVGLEDVEDLLKDFVQALS"
     gene            complement(1783..>2243)
                     /locus_tag="VI413_11385"
     CDS             complement(1783..>2243)
                     /locus_tag="VI413_11385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008625346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar nucleotide-binding protein"
                     /protein_id="HEY6915270.1"
                     /translation="GEQALMEVCPQSVILRTAWLYSSFGNNFVKTMMKLGAERDSLNV
                     IFDQVGTPTYAADLADAILTMLSHETFVPGIYHFSDEGVCSWYDFTKTIHRIAGITCD
                     VRPIETKDYPARTPRPHYSVLNKAKIKATYGIVIPHWEESLERCIEILKG"
BASE COUNT          685 a          504 c          468 g          586 t
ORIGIN      
        1 attcttgccg aacttggcga ccacaaagtt cagtatgcag aattatcaaa attccctgaa
       61 gtaaaacgtg atttggcttt attgctggat aaaaatatca cttttgctga aattgaaaag
      121 atagctttcg aaacagaacg caagttgctg aaaaaggtaa acctgttcga cgtgtacgaa
      181 ggcaagaacc tggaagccgg caagaaatca tacgccgtaa gcttcctgtt gcaagacgac
      241 agcaaaactc ttaccgacac gcaaattgac ggtatcatga aaaagctgca aaacaactac
      301 gaaacaaaac tgggagcaaa actcagataa aaacagagac aacaacttag aaatttgttt
      361 ttaccattca gtgcacacct accaggtttt aaaaacctga taggtgttta caagcgataa
      421 caaattgtac aaatttctta cctcttactc cttgcctctt acctcttatt attatggata
      481 aagatttatc attcgacgga aaaatattgc atactcccta tgccaaaccc gatgcataca
      541 atgcattgag tatgcctgtt tataattcgg ctgcctatga atttgaaacg gcagaagata
      601 tggaagcagc atttaccggg cgttctgcaa accacacata ctcacgaatt accaatccga
      661 cggttcaata ttttgaagac cgtgtgagaa ctattaccgg tgctttcagt gccacggctc
      721 tgaattcggg aatggcggca ataaccaatg ccattattac ggtagctcaa acgggtagca
      781 acatagttac ttcgcgccat ttgtttggaa atacatattc attcttcgcc tctaccctgg
      841 cagcttttgg tgtggaaatc cggttttgcg acctgaccaa tgcagatgaa gtagattcgc
      901 acattgatgc aaacacctgc gcactctttt tagaaataat caccaatcct caattggaag
      961 tggccgattt gaaagccatt tcaaaaattg cgaaacaaaa gggcgtacct gtcattgcag
     1021 acaccaccat tgttccgttt tgtgctttca aagcaaaaga ttttggggtg aacatagaaa
     1081 ttgtgtcgag cactaaatat atttcgggcg gtgcaaccgg attgggagga ttgattatcg
     1141 attacggtaa tttcgactgg ctttcgtcac caaaattgca cgttatggct aaagaattcg
     1201 gaccggcggc atttacagcc aaacttcgca aagaaataca ccggaacatg ggcgcataca
     1261 tgactcccca agtagcttat atgcaaacat tgggtatgga aacgttgact atacgctacg
     1321 aacgcgcaac cgacacctgc cttaaactgg ttgaaaaact ggaggcgctt cccgaagtgg
     1381 aatcggtaaa ttacaccggg ttaccgtcca ataagtacta cgagctaagc cgaacacagt
     1441 ttggcgagaa accaggcgcc atgtttacgt ttaatctggc atcgcgcgaa gcctgcttta
     1501 gcttcatgaa caaactcaaa ctggtaaaac gtgccaccaa cctgttcgac aataaaacac
     1561 tggccattca cccggcaagc accatttacg gaacatttac tgccgaaata cggaaagaaa
     1621 tgaacgtatc ggacaaaacg attcgtattt cagttggact tgaagacgtg gaggatctgc
     1681 tcaaagattt tgtgcaggca ctatcgtagc agtacagcat cataaagtaa aaaacctcga
     1741 atcaactaac atgattcgag gttttttact ttatgcccgg aattatcctt ttagtatttc
     1801 aatgcatcgt tccaggcttt cctcccaatg tggaattaca attccgtaag tagcttttat
     1861 ttttgctttg ttcagcacgc tatagtgcgg acgtggcgtg cgggccggat aatccttcgt
     1921 ttcgataggt cgaacgtcgc atgtaattcc ggcaatgcgg tgaatggtct ttgtaaaatc
     1981 gtaccatgag caaacgcctt cgtcggaaaa atgatatatg ccgggcacaa atgtttcgtg
     2041 gctcaacatc gttagaatag cgtcggccag gtcggcagca tatgtcggcg ttcccacctg
     2101 atcgaaaatc acattcagag aatcacgctc agcaccaagt ttcatcattg ttttcacaaa
     2161 gttgttgcca aacgaagaat acaaccatgc tgtgcgtaaa attaccgatt gcgggcaaac
     2221 ttccatcaac gcctgttctc ctg
//
LOCUS       DATDNM010000672         2446 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2111331, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000672 DATDNM010000000
VERSION     DATDNM010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2111331"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VI413_11390"
     CDS             <1..364
                     /locus_tag="VI413_11390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HEY6915271.1"
                     /translation="EERKANSGDSDFDSMIAYVDEYGNITSTPPDPTKKKKIDASTIE
                     IGVSRREEVAEPTERTGKIDFFDDSKGFGFIKEINSQDKFFVHVKGLLQEVKEGDTVT
                     FELERGLKGMNAVRVKKI"
     gene            412..1158
                     /locus_tag="VI413_11395"
     CDS             412..1158
                     /locus_tag="VI413_11395"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006844540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEY6915272.1"
                     /translation="MSFLSKTVIVTGSGKGIGRSIAMAYAAEGAAVIIAEKDRIAGMK
                     TESDIRQASGTALFVETDVSCETEIIKLVNTAIEKYGRIDILISNAGISRWKSPYELT
                     VEEWDEILNTNLRGMFLLAREAARHMRLTGGGSIVNIASTRAFMSEPNTEAYAASKGG
                     ILALTHALAASFAPDRIQVNSISPGWIETGDYTQLRDIDHTQHFAQRVGKPEDIARAC
                     LFLTARNNEFITGTNLTIDGGMTRKMIYEP"
     gene            1581..>2446
                     /locus_tag="VI413_11400"
     CDS             1581..>2446
                     /locus_tag="VI413_11400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915273.1"
                     /translation="MTQNIVRIRIITYFSVLCLLTIFAAQAYVVFNNYKITRDFLTRE
                     SDAILETAFRTDLSIRNKKFKHLRNEDTITVIPPPTKKNTIKVDMSKMNDLGNNTLGA
                     IDLAINYAISTLVPLNVNQLDSVTGDILQSRYINSTYIINIVDTKSNKIVAHSDKKFR
                     ISVFQIQSKPLLVDFQRNNALQLVLINPFESIFKRMGILLSASFLLSIFCFYGLWVLF
                     RTLARQKKLIEVKNEFFGQTAHELKRPVAHLHMALEALSNPAIDQNTAKKERYLSISK
                     EATKDMSEKITM"
BASE COUNT          813 a          509 c          467 g          657 t
ORIGIN      
        1 agaagaacgc aaagccaata gtggcgatag cgacttcgac agcatgattg cctacgtaga
       61 tgagtatggc aacatcacca gcactccgcc ggatcctacc aaaaagaaaa aaattgacgc
      121 ttcaactatc gaaataggtg tttcgcgtcg cgaagaagta gccgagccaa ctgaacgcac
      181 tgggaaaata gactttttcg acgattctaa aggatttggt tttatcaaag agattaactc
      241 acaggataaa ttttttgtac acgtaaaagg attattgcag gaagtaaaag aaggcgacac
      301 agttactttt gaactggaac gcggactgaa aggcatgaat gcagtacggg taaaaaagat
      361 ctaaaaccac cctctatacc aattatctct tcataaacta acagacttag tatgtcattt
      421 ctatccaaaa ccgttatcgt tacaggttcc ggaaaaggaa tcggacgtag tattgcaatg
      481 gcttatgctg cagagggagc agcggtaatt attgcagaaa aagaccgaat cgcaggaatg
      541 aaaaccgaat cggacattcg gcaagcaagt ggtactgctt tattcgtaga aacggatgtt
      601 agttgtgaaa cagagattat aaaactggta aacaccgcca ttgagaaata cggccgcata
      661 gatattctta tcagcaatgc cggcatttcg agatggaaat caccttatga actgaccgtt
      721 gaagagtggg atgaaattct caataccaac cttcgcggca tgttcctgct tgcccgcgaa
      781 gcagcacggc acatgcgcct gacgggtggc ggttctattg tcaacattgc atcaacgcgc
      841 gcttttatgt ccgaacctaa caccgaagcc tatgctgctt ccaagggcgg catactggca
      901 ttgactcatg cactggcagc atcattcgct cccgatcgta ttcaggtaaa cagcataagt
      961 cccggatgga ttgaaacggg cgattacaca caattgcgcg atattgacca cacacaacat
     1021 tttgctcaac gggttggcaa gccggaagac attgccagag cttgcctgtt tctgactgcg
     1081 cgtaacaacg aatttatcac cggcaccaac ctcaccatcg atgggggcat gacacggaaa
     1141 atgatttacg aaccgtaaag gatatttctt ataaaagaaa tatcagatta gtgagaaaat
     1201 caaaactgaa agtgtactaa actacaattc ctcccagaaa gcaaattttg agttaaccac
     1261 aataacaccg atagatattg gtgttattag aaatcaagcg gtacagccaa cacaaaatta
     1321 cgagttgaat ttgtctgttg gttattataa tgttcaggtt aaatagacaa atttttgtag
     1381 ttcactatcc taaaaaagcc gtaccgccga ttttcacgat taatagaatt gacagtgcaa
     1441 tattactctc tttcaattta accaactcta atttttttct catttatttc taataaaact
     1501 ctaatatttt gtacttttga cgttaaatat caggtttttc ataaaaaaga gtgcgttatt
     1561 attgctcaag tctactttat atgactcaaa acattgtcag aattcgaatt atcacctact
     1621 tttcagtatt gtgcttactc accatttttg cggctcaagc ctacgtggta ttcaacaatt
     1681 acaaaattac acgcgatttt ttaacccggg aatcggatgc aattcttgaa actgctttcc
     1741 gaacagattt aagcattcga aataaaaaat tcaagcattt aagaaatgaa gatacaatca
     1801 ctgtaattcc acctccaaca aagaagaata cgatcaaagt tgacatgagt aaaatgaatg
     1861 accttggcaa caatacgctg ggagccatag atttagcaat aaactacgct atcagcactt
     1921 tagttccact aaacgtcaac cagctggata gtgttaccgg tgatatcctt caatcacggt
     1981 atatcaattc aacatacata ataaacattg ttgacactaa atcaaataaa atagttgctc
     2041 attccgataa gaaatttcga atatcagtct ttcagataca atcaaagcca ctactcgttg
     2101 attttcaacg aaacaatgca ttgcagcttg tgttgataaa tcctttcgaa agcattttca
     2161 aacgcatggg aattctactg agtgcttcat ttttactctc catattttgt ttttatggac
     2221 tttgggttct tttccgtacg ctggcacgcc agaagaaact aattgaagtg aagaacgaat
     2281 tctttggaca aaccgcccat gaactaaaac gcccggtagc tcatttgcac atggcattgg
     2341 aggccttatc taatccggcc atagaccaaa acacagcaaa gaaagaacga tacctgtcca
     2401 tttccaaaga agcgaccaaa gatatgtcgg agaaaataac catgat
//
LOCUS       DATDNM010000673         3281 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1363241, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000673 DATDNM010000000
VERSION     DATDNM010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3281
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1363241"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1154
                     /locus_tag="VI413_11405"
     CDS             <1..1154
                     /locus_tag="VI413_11405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006799911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6915274.1"
                     /translation="LLLEKEVYNDPDFKTKLTDAVTSIQTGSAWFGGNIVGPMITNEN
                     DKLLHAIDNLEDGEWWLVRPEFVDEKCYILKPCVKWGVKPGSYTFQNELFAPLLGVVC
                     IDDLDHGIKLMNSSEYGLTSGLQSLDETEQLRWKNGIEAGNLYINRGITGAIVNRQPF
                     GGMKRSAFGGGIKAGGRNYVSCFVNITENPPTDNVTTEYKSFKSYSAILESSEKVRFL
                     KAVESYQYNMENEFSQELDINNILGERNTFRYLPLKKMALRVQSSDNLCDVFMVLAAA
                     KIAKTNLTISISKYDPKLATIQKCAGKDFTIIVQTEPEFLVEMDKYERIRTCSLLQDE
                     CYRKAAKIGKYIASQSPLIEGRLELLHYVKEQSIAFEYHRYGSITEEVK"
     gene            complement(1222..2334)
                     /locus_tag="VI413_11410"
     CDS             complement(1222..2334)
                     /locus_tag="VI413_11410"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HEY6915275.1"
                     /translation="MKEKKRSVFIILASIFLLSVLAQKNDYRLLIGTYTNAGKSLGIY
                     SYDIDMHAGVFTQKSVATGISNPSYLAIAPDKRFVYSVNESPDGSGANAFAFDKKNGK
                     LTKLNSSLTQSAGPCFISVAPKHVFTANYGGGSVSVFGRAADGSLTDILQLIQHSGKS
                     INTERQNEPHVHQVILSPDKKYLVANDLGTDNVTVYKYNPDSKTEILIPYDTLAAKPG
                     SGPRHAVFSKNGRRLYLVQEIDGTVSVLGVKNGKLTNIQETTVDYKAGTVNRGADIHL
                     SSDEKFLYVTNRGNANNITCFSVAKDGKLSFKQQVLSGGDGPRNFAITPDGQYVFVAH
                     QFTDNIVIFKRDKKSGELTDTGKRIEVGAPVCLVFY"
     gene            2467..2892
                     /locus_tag="VI413_11415"
     CDS             2467..2892
                     /locus_tag="VI413_11415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEY6915276.1"
                     /translation="MSDKHIVKTEWKGDMAFEADVNGHKVMMDATVEGGGQDSGPSPK
                     KLQLVALSGCTGMDVVSILKKMRVEIEKCSIEVQGDVTTEHPKHYYKMHVIYKFTGKN
                     LPLEKLEKAVKMSEDTYCGVEALYRKAIEVTSEIRIIES"
     gene            2945..>3281
                     /locus_tag="VI413_11420"
     CDS             2945..>3281
                     /locus_tag="VI413_11420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEY6915277.1"
                     /translation="MEIKHIFRNNQKWILEKLKTDKDYFKKLSVTHNPEILYIGCSDS
                     RVSAEELMGVQPGEVFVHRNIANMVPNTDLNVMSVINFAVSHLKVKHIVVCGHYYCNG
                     VKSAMESADL"
BASE COUNT         1098 a          611 c          652 g          920 t
ORIGIN      
        1 tattactact cgaaaaagaa gtgtacaacg accctgattt caaaacaaaa ctaactgatg
       61 ccgtaacaag tattcaaacc ggcagcgctt ggtttggcgg caatattgtt ggcccaatga
      121 ttaccaatga aaatgataaa cttctgcatg ccatcgacaa ccttgaagat ggcgaatggt
      181 ggttagtaag accggaattt gtggacgaaa aatgctatat tctgaaacct tgtgtaaaat
      241 ggggtgtgaa accgggaagt tatacattcc aaaacgagtt gtttgcacca ttgttgggtg
      301 tggtttgtat cgatgattta gatcatggaa ttaaactgat gaattcaagt gaatacggcc
      361 tcacatcagg tcttcaaagc ttagatgaaa cagaacaatt gcgctggaaa aacggaattg
      421 aagccggaaa tctctatatc aaccgtggaa ttaccggagc catagtgaac cgacaaccgt
      481 ttggcggcat gaaacgttca gcctttggtg gtggcatcaa agccggtggg cgaaattatg
      541 tgtcttgttt tgtaaatatc actgagaatc caccaacaga caatgtaaca actgaatata
      601 aatcatttaa gtcatattca gcgattcttg aatcgtcaga aaaagttcgt tttttgaaag
      661 ctgtggaaag ttatcaatat aacatggaaa atgagttttc acaagagctg gacataaata
      721 atatactagg ggaacgaaac acattcagat atctgccttt gaaaaaaatg gcattaaggg
      781 tacaatccag cgataatttg tgtgatgtat ttatggtgct tgcagctgcg aaaattgcta
      841 aaacaaacct gacaatcagc atcagcaaat atgacccaaa actggcaaca attcagaagt
      901 gcgctggtaa ggattttact attattgtac agacagaacc ggaatttttg gttgaaatgg
      961 ataaatacga acgtatccgg acatgcagtt tgttgcaaga cgaatgctac cggaaagcag
     1021 ccaaaatagg gaaatacatt gcttcgcaaa gtccacttat tgaaggccgc cttgaattac
     1081 ttcattatgt aaaagaacaa agtattgctt ttgaatatca tcgctacggt agcattacgg
     1141 aagaagtgaa atagcgtaat atttaggaac taagaaaaag agagcgactc gataatttac
     1201 attgagccgc tctctttata ttcaataaaa aaccaaacat accggtgctc caacttcaat
     1261 tcgctttcct gtatcggtga gttctccgga ttttttatct cgtttaaata tcacaatatt
     1321 atcagtgaat tgatgagcaa caaacacata ttgaccatca ggggtaatcg caaaattccg
     1381 gggaccatca cctccgctca aaacctgttg tttaaaagaa agcttgccat cttttgccac
     1441 agaaaagcag gtaatattat ttgcatttcc acgattagta acgtataaaa acttttcatc
     1501 tgacgaaaga tgaatgtcag ctccccgatt cacagttcca gccttataat cgacagttgt
     1561 ttcttgaata ttagtaagct taccattttt cacccccaac acggaaacag ttccatcaat
     1621 ttcctgaacc agataaagcc ttctgccatt cttgctgaaa actgcatgcc gcggaccact
     1681 tccgggtttt gcagcaagcg tatcataagg aattaatatt tcagttttcg aatcgggatt
     1741 gtacttgtaa accgtcacat tatctgttcc tagatcattt gccacaaggt attttttatc
     1801 tggcgacaaa atcacctgat gcacatgtgg ctcattttgg cgttcggtat ttatactctt
     1861 gccggaatgc tggataagct gtaaaatgtc tgtcagtgaa ccatcagccg cccgtccaaa
     1921 aacagaaaca cttccaccac cataattggc tgtaaaaaca tgttttggag ccacggaaat
     1981 aaaacaagga ccagcacttt gagtcaacga ggagtttagt ttcgtcagtt ttccgttttt
     2041 cttatcaaaa gcaaaagcat tggcaccact tccatccgga ctttcattca cagaataaac
     2101 aaatctctta tcaggcgcaa tagccagata actggggttt gaaattccgg tagcaactga
     2161 tttttgagtg aaaacacctg catgcatatc aatatcatag gagtaaattc ccaaactctt
     2221 accggcatta gtgtaagtac ctattaataa gcgataatca tttttttgag ctaaaaccga
     2281 aagcaagaat atggaagcaa gaataataaa aactgacctt ttcttttctt tcatttttgt
     2341 tttaatagtg aattcatttt caaattgacc accaaatgta cgtttttttt aggaataatt
     2401 tcatttgaaa aaacaatgtt gcgagaattt gcgttacttt cgtaggcaat taataaaaca
     2461 aaatatatgt cagacaaaca cattgttaaa acagaatgga aaggcgatat ggcattcgaa
     2521 gcagatgtaa acggccataa agtaatgatg gatgcaactg tagaaggtgg tggccaggat
     2581 tcgggtccaa gccctaaaaa actgcaactg gtggcattaa gcggttgtac gggaatggat
     2641 gtggtttcta ttttgaaaaa aatgcgggtg gaaattgaaa agtgttctat cgaagtacag
     2701 ggcgacgtaa caaccgagca cccaaaacac tattataaaa tgcacgtgat ttataaattc
     2761 acaggtaaaa atttgccgct tgaaaagctt gaaaaagccg tgaaaatgtc tgaagatacc
     2821 tactgtggag ttgaagcgct ttaccgcaaa gctatagaag ttacatctga gataagaata
     2881 attgaatctt aaaaattcat gcagctagtt tagaattaaa acagccctgc aaacatcaaa
     2941 taatatggag ataaaacaca ttttccgcaa taatcaaaag tggattcttg aaaaactcaa
     3001 aacagataaa gattatttta agaaattatc agtaactcac aatcctgaaa ttctgtacat
     3061 tggctgttct gatagtcggg tttctgccga agaattaatg ggggtgcaac ccggtgaggt
     3121 ttttgtgcac cgtaacatag ccaacatggt tcccaatact gatttaaatg tcatgtcggt
     3181 aatcaacttc gctgtcagcc acctgaaagt aaagcatata gttgtttgcg gacattatta
     3241 ctgcaacggg gtaaaatcgg caatggaatc tgccgatttg g
//
LOCUS       DATDNM010000674         4917 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1684253, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000674 DATDNM010000000
VERSION     DATDNM010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4917
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1684253"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..660)
                     /locus_tag="VI413_11425"
     CDS             complement(<1..660)
                     /locus_tag="VI413_11425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 10 glycosylhydrolase"
                     /protein_id="HEY6915278.1"
                     /translation="MRAVWIATVANIDWPSQRNLTSKAQRDEMRAMLDGLAKNNINAV
                     IMQIRPTADAFYPSALEPWSNWLTGKQGAKPNPYYDPLQFIIEEAHKRCIEVHVWLNP
                     YRVTNSENLNILNKNHLYFKNKDLFLKYGDKYYFNPGLDETREFLNHVVEDVVERYDI
                     DAIHFDDYFYPYRVPGEEFPDEAAFRANPRGFAPNQKDDWRRNNVNMVISELQQTIKN
                     LK"
     gene            888..1331
                     /locus_tag="VI413_11430"
     CDS             888..1331
                     /locus_tag="VI413_11430"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009316617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008929 - methylglyoxal synthase activity
                     [Evidence IEA];
                     GO_process: GO:0019242 - methylglyoxal biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HEY6915279.1"
                     /translation="MNKQLTIALVAHDRRKADMVEWAVFNADMLSKHKLICTGTTGGL
                     IQKALEEKGVEADITCMNSGPLGGDAEIAALVVRKQINLAVFLIDDLNAQPHEADIQM
                     LLRQCRVHNVPIACNRYSADLMITSTLWDNDEYTPSEPRYIKFDR"
     gene            1510..2871
                     /locus_tag="VI413_11435"
     CDS             1510..2871
                     /locus_tag="VI413_11435"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915280.1"
                     /translation="MKHILSALFIAVLFSVSQPVIARSADGNQLITELKVFDNDSTFR
                     YVYLYDNDGKKMLETRYYKQTNSWTRISQTEWLYEAGNCKHQIERNWKNNEWADSYKI
                     DYNYLNGVLDNEIHKNYIDKAEQQLKKVVYQYDQTKLTSKKEYSGKSNVWTLMLQTDF
                     KCSQTASVDSVITSVYQSGNLINQYLAVNSYSVDGHLESQLQKEKASNNDWTNTQFVS
                     WFYSPGYSRLLTERTKTWSPETSDWENYQRTDYEYDDNKQLVSETYQHWKMMFWESDL
                     RYYYQHDADGNEIKKTLSKPIYHEWRDLISINYSDFTGNKANLMESKYEFWGGNTGEL
                     VSSFIPFNFNNETVIQRGRSLQISYLDVAADTVSYIPETKNSIQSIPVYPNPSDGIYY
                     INTQEYGVQSWVIADLDGRTLKNHVQSISSGVIDITDLPKGIYILKVITQTGQFTQKL
                     IKQ"
     gene            2972..>4917
                     /locus_tag="VI413_11440"
     CDS             2972..>4917
                     /locus_tag="VI413_11440"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HEY6915281.1"
                     /translation="MAALSVAGTALAANPLLETYKTPHQTIPFNEIKTEHYFPAFEEA
                     MKQHSFEVDAIITNPQAPTFENTIVALENTGKLLSKVSSPFYNLLSSETPDELQDIAE
                     KISPLLTEHSNSISLNEKLFARVKAVYDQKEKLKLTPEQQMLLQNTYDGFADNGANLS
                     EADKAIYRELSKDLNMLTLQYGQNVLKETNKYSLLITDKKLLGGLPADFMDMLASNAK
                     KAGKEGWMLNLKTTTYVPFMKYADNRDLRRELYIASSTRCMIGGEYDNREIIRKIANT
                     RLKIANVLGRKSYAEHVLKHRMAESKQHVYDLLDKLLAAYKPAAEKEYAEVQEYADNH
                     GAYFKLQPWDWSYYSEKLKDEKYSVNDEMLKPYFELEHVKKGVFGLATRLYGIHFTKN
                     TKIPVYNPEVDAYDVTDENGKFLAVLYTDFHPRDGKRAGAWMNDFKAQWLDGKTDSRP
                     HITIVMNFTRPTSTKPALLTFDELTTFLHEFGHSLHGMLTKCTYESLSGTSVYRDFVE
                     LPSQVMENWGSEKEFLDGFAVQYLTGEKIPAELIQKIKASENFNIAYFCLRQLSFGYL
                     DMAWHTLEKPFDGDVIDFEKEAMASTQILPVIPNTGMSPTFSHIFSGGYAAGYYSYKW
                     AEVLDADAFSVFSKNGIFDKKTAES"
BASE COUNT         1570 a          903 c         1029 g         1415 t
ORIGIN      
        1 tttcaggttt ttaatggttt gttgcagttc ggaaataacc atattcacat tattccggcg
       61 ccaatcgtct ttctggtttg gggcaaaacc acgtggatta gccctgaatg ctgcttcgtc
      121 tgggaattct tcgcccggaa cacgataagg ataaaaatag tcgtcgaaat ggatggcgtc
      181 aatgtcatac cgttcaacca catcttcaac cacatgattc agaaattcac gtgtttcgtc
      241 cagtcccgga ttgaagtagt atttgtcacc gtattttaaa aacaagtctt tgtttttgaa
      301 atacaaatga tttttgttga gaatattcag gttttcagaa ttagttaccc gataaggatt
      361 cagccacaca tgtacttcta tgcaacgttt gtgagcttct tcaataatga attgcaatgg
      421 atcgtaataa ggatttggtt ttgcgccttg ttttcctgtc agccagtttg accacggttc
      481 caatgccgaa ggataaaaag catcggcagt aggacgaatt tgcattatga cggcattaat
      541 attatttttt gccaagccat cgagcatggc gcgcatttcg tcgcgttgcg ctttcgaagt
      601 cagattgcgt tggctaggcc agtcgatatt ggcaacagtt gcaatccata cggctcgcat
      661 ttcgcgtttt ttttgttgtg cagacaaagt tgtcagaaat aggagggaga ctaggagaaa
      721 gctgatactt tttttcatgg aattttaatg tgtgaataca aaagtagaca aaattggcaa
      781 atgcagcaac ctgtgtatcc atttttcaat aacttttgct gtgaactgtt gtttaaaaca
      841 agaaaaaaaa gtaattttgt gaaatgaata aagaaaatag agatcgtatg aataaacagc
      901 tgacaattgc cttggttgct catgacagac gtaaggcaga tatggttgaa tgggcggtat
      961 ttaatgccga catgttatcg aagcacaaat tgatttgtac cggaactacc ggtggtttaa
     1021 ttcaaaaagc cctcgaagaa aaaggagtgg aggcagatat tacctgcatg aattccggac
     1081 cgcttggagg tgatgccgaa attgctgcat tggtagtgcg taaacaaatc aaccttgccg
     1141 tgtttttgat tgatgacctg aatgcgcaac cgcacgaagc cgatatacaa atgttgcttc
     1201 gccagtgccg cgttcataat gtgccaattg cctgcaatcg ttacagtgcc gatctaatga
     1261 taaccagtac gttgtgggat aatgatgaat atacgcccag cgaaccgagg tacattaagt
     1321 ttgaccgtta atacagacaa gatattgttc aaccagcact gccggataag ttcggcggtg
     1381 ctttttattt gcttgtgaaa gtacatgaaa atggtttata atgaggccga aatgtattaa
     1441 cgtggtctat tttgcaacat tgaataatta tatgtatttt tgacgaattt tagaccagat
     1501 ttctattaaa tgaagcatat tctttcagcc ttattcattg cagtattgtt ttcggtatct
     1561 cagccggtta tagcccgttc agcagatgga aatcaattaa ttaccgaact caaagtgttt
     1621 gataatgatt ccacattccg ttatgtttat ttatacgaca atgatggaaa aaaaatgcta
     1681 gagacccgat attataaaca aacaaattcc tggacccgaa tttcccaaac tgaatggctg
     1741 tacgaagctg gcaattgtaa acaccagatt gaacgaaact ggaaaaataa cgaatgggca
     1801 gactcatata aaatcgatta taattatttg aatggtgttt tagataacga aatacataaa
     1861 aattatatcg ataaagcaga acagcaactc aaaaaggtag tatatcaata tgatcagaca
     1921 aagctcactt ccaaaaaaga gtattccggt aaatcgaatg tttggacttt gatgcttcag
     1981 acagatttta aatgctctca aaccgcttca gtcgattctg taattacttc ggtttatcaa
     2041 tcgggaaatc tgataaacca gtatttagct gtgaattcat attcggttga tggtcattta
     2101 gaatcacaac ttcaaaagga aaaagcaagc aacaacgatt ggactaacac acaatttgta
     2161 agctggtttt atagcccagg ttactccaga ttgttgaccg agcgcactaa aacatggagt
     2221 cctgaaacct cggattggga gaattatcaa cgtaccgatt atgaatacga tgataataaa
     2281 cagttagtct cagagacata tcaacattgg aaaatgatgt tttgggaaag tgatttgcgt
     2341 tactattatc aacacgatgc tgatggcaat gagataaaaa agaccctttc gaagccgatt
     2401 taccatgagt ggagagacct gatttcaata aattattcag attttacagg taataaggca
     2461 aacctgatgg aatcgaaata tgaattctgg ggtggaaata caggagaact tgtaagttca
     2521 tttattccgt ttaattttaa taacgaaact gtcattcaac gcggtagaag tttgcaaata
     2581 agttatttgg atgtggccgc ggatacggtg tcgtacatac ccgaaaccaa aaattctatc
     2641 cagtcaatac ctgtgtatcc gaatccttcc gacggcattt actacatcaa cacacaggaa
     2701 tatggtgtgc aatcatgggt tatagccgat ttggatggac gcacattgaa aaaccatgtt
     2761 caatcaatca gttcaggtgt tattgacata acagatttgc ctaaagggat atatattctg
     2821 aaggtaatta cccaaactgg acagtttacc cagaagttaa ttaagcaata gttgaacttt
     2881 actaaatatt taatgttttg ttatcgattg tctgatacca gaaaaaatca acacgtattt
     2941 taagatgaaa acaattaaaa caattttttt tatggccgca ttatcggtag caggaactgc
     3001 attggcagct aatcctctct tagaaactta taaaactcct catcaaacta ttccgtttaa
     3061 tgaaattaaa acggagcatt atttccccgc ttttgaagag gcaatgaaac agcattcgtt
     3121 cgaagtggat gctatcataa ctaatccaca ggcaccaact ttcgaaaata cgatcgttgc
     3181 gttggaaaat accggaaaat tattgagcaa agtaagttca cctttctata atttactaag
     3241 ctccgagaca cctgatgaat tacaggatat tgctgagaaa atttctccgc ttttgaccga
     3301 acacagcaat tctatcagtc tgaatgagaa actttttgcg cgagtaaaag cagtttatga
     3361 tcaaaaagag aagctcaaac ttactcccga gcaacaaatg cttttgcaaa acacgtatga
     3421 tggatttgcc gacaatggcg caaacctatc agaagcagac aaagccattt accgcgagct
     3481 atccaaagac ctgaatatgt tgacgcttca atacggacaa aacgtgttga aggaaaccaa
     3541 taaatacagt ttgcttataa cggataagaa gttgctgggt ggtttgcctg ccgacttcat
     3601 ggatatgttg gcatcgaatg ccaaaaaagc aggaaaagag ggttggatgc ttaatctgaa
     3661 aacaaccact tacgttccgt tcatgaaata tgccgataac agggatctac gacgtgaatt
     3721 gtatatagcc agttctaccc gctgcatgat cgggggcgag tatgataacc gtgaaatcat
     3781 tcggaaaatt gccaataccc gattgaaaat tgctaatgtt ttgggacgta aatcctatgc
     3841 cgagcacgtg ttgaaacaca ggatggcaga gagcaagcaa catgtttacg acctgctcga
     3901 caaattgctt gcggcctata aaccggcagc tgaaaaagaa tatgccgaag ttcaggagta
     3961 tgccgacaat catggagcgt attttaaact tcaaccctgg gattggtcat attattccga
     4021 gaaattgaag gatgaaaaat attcagtgaa cgacgaaatg ctgaaacctt attttgaact
     4081 ggaacatgta aaaaaaggag ttttcggact tgctacccgc ttatatggca ttcattttac
     4141 aaagaataca aaaattccag tttataatcc cgaagttgat gcatacgatg taactgacga
     4201 aaacggtaaa ttcctggcag tgctttacac cgatttccat ccgcgcgatg gcaaacgtgc
     4261 cggtgcgtgg atgaatgatt tcaaagcgca atggttggat ggcaaaaccg acagccgtcc
     4321 gcacatcact atcgtaatga actttacccg tccgacaagt acgaaaccgg ctttgcttac
     4381 atttgatgaa ttgactacgt tcctgcacga attcggtcat tcattgcacg gaatgcttac
     4441 taaatgtact tacgaatcgc tttcaggaac aagtgtatat agggattttg tggaattgcc
     4501 ttcacaggtt atggagaatt ggggttcgga aaaagaattt ctggatggtt ttgcagtaca
     4561 atacctcaca ggagagaaga ttcctgctga attgattcaa aagattaaag cttctgagaa
     4621 tttcaatatt gcctatttct gtcttcgcca gttgagtttc gggtatctgg atatggcatg
     4681 gcatacattg gaaaaaccgt ttgacggtga tgtaattgat tttgaaaaag aagctatggc
     4741 atcgactcaa attttgccgg taattccaaa tacaggcatg agcccgactt tcagccatat
     4801 tttctcagga ggttatgctg ccggttatta cagctacaag tgggctgaag tgcttgatgc
     4861 agatgcattc tctgtattct cgaaaaatgg aattttcgat aaaaaaacgg ctgaatc
//
LOCUS       DATDNM010000675         2306 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_509252, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000675 DATDNM010000000
VERSION     DATDNM010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_509252"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..803)
                     /locus_tag="VI413_11445"
     CDS             complement(<1..803)
                     /locus_tag="VI413_11445"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004316194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008880 - glucuronate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006064 - glucuronate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HEY6915282.1"
                     /translation="MKNFLDENFLLQTETAQKLYHEHAAKQSIIDYHCHLIPSMVAND
                     HQFKSLTEAWLGGDHYKWRAMRTNGVDERFCTGKDTSDWEKFEKWAETVPHTMRNPLY
                     HWTHLELKTAFGVEKLLSPKTAREIYEECTAKLQTPEFSARNLMRHYKVEAVCTTDDP
                     IDTLEHHIKTRQDGFEVKMLPTWRPDKAMAVESSANFCNYVEQLAKISGVTISTFDDM
                     ILALRKRQDFFAEQGCKLSDHGIEEFYAEDYTEAEIKAIFNKVYGGQELT"
     gene            1157..2230
                     /locus_tag="VI413_11450"
     CDS             1157..2230
                     /locus_tag="VI413_11450"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY6915283.1"
                     /translation="MKEINTKIRIKDIATLAGVSEGTVDRVLHQRGDVSEKSRIAVTK
                     VLEEMNYTPNLFARSLASKKQYRFVCLFPQYEQGEYWEIVDRGFNMAAKDFIHHNVHI
                     DKRCFNQFDANSFITVSNEILNNEPDAVLISPIFREETIEFTSELAARDIPFSFIDST
                     IDDVDFLTYYGQNSFKSGYIAAKLLLESMSEKAQILVIRTQRKGSVSNQTLSRNNGFL
                     QYIQEFNLENQYELINVEFKNDDEESNRKILSEVFNANSNIKGAITFNSKVYRLAMHL
                     DALNHTDVRLIGYDLLDQNVNYLQQGVISYLIAQRPDKQAYFTVRDMCKELIFKQEIK
                     KINYVPIDILIKENIEDYMHFTE"
BASE COUNT          721 a          380 c          424 g          781 t
ORIGIN      
        1 gtcaattctt gcccaccata taccttatta aagatagctt tgatttcagc ttcggtataa
       61 tcttctgcgt aaaactcttc aattccgtgg tccgaaagtt tacagccttg ttcggcaaag
      121 aaatcctgac gtttgcgcaa tgccagaatc atatcgtcga aagtagaaat agtaacccct
      181 gagattttag ccagttgctc cacataattg cagaagtttg cagaactttc cacagccatt
      241 gccttatcag ggcgccatgt aggcaacatt tttacttcaa aaccatcctg acgtgtttta
      301 atatggtgct ccagtgtatc aataggatcg tcggtagtac aaacggcctc aactttataa
      361 tggcgcatta ggttacgggc cgaaaattca ggagtttgta atttagctgt acattcttcg
      421 taaatttcac gagctgtttt tggagaaagt aatttttcaa ctccaaaagc agttttcaat
      481 tccaaatgag tccagtgata aagcgggtta cgcatggtgt gcggaactgt ttcagcccat
      541 ttttcaaatt tctcccagtc ggaagtatct tttccggtgc aaaaacgttc gtcaacaccg
      601 ttggtacgca ttgctcgcca tttataatgg tcaccaccca gccatgcttc ggttaatgat
      661 ttgaactgat ggtcgttagc caccatcgat ggaattaagt gacagtgata gtcaataatt
      721 gattgttttg cagcgtgctc gtgataaagt ttctgagccg tttcggtctg aagtagaaaa
      781 ttttcgtcta agaagttttt catgattgta tgttttttat agttttttta tgtctttaac
      841 caagatgatt taacgcttat cggcgaacta atctgttgtt tttatgtttc tgacaagcaa
      901 aaaactttat gtttgaatag ttttttgtct ttaaaaacat gtttttgaat atatttttca
      961 gtgttttttg tttctgtaaa aatgaaagtg tatttgtaat gtactggtgg ataatttaat
     1021 aggtgttttt aaactgacaa aatcactttc cgtgttcgcc cacgaagata caaataattt
     1081 tatatttacg aaatatgtac tacttttgtg tgaaattttt attgtgtgcg aacacggaat
     1141 tattgtttat atataaatga aagaaataaa taccaaaata cgaataaaag acatagccac
     1201 attggccggt gtatctgaag gaactgttga cagagttttg catcaacggg gcgacgtttc
     1261 cgaaaaaagc cgtatcgctg taacaaaggt tcttgaagaa atgaattata ctccaaattt
     1321 gtttgcgcgt tcactggcat caaaaaagca gtatcggttt gtttgtttat ttccgcaata
     1381 cgaacagggc gaatactggg agattgtgga ccggggattc aatatggctg caaaggattt
     1441 tatacatcat aatgttcata tcgataaacg ttgttttaat cagtttgatg caaattcatt
     1501 cataactgtt tctaatgaaa ttctgaataa tgaacctgac gctgtattaa tttcgcctat
     1561 tttcagggaa gaaaccatag aattcacatc agaacttgct gcccgcgata ttccgttttc
     1621 atttattgac tctactattg atgatgtaga ttttctgaca tattatggac agaactcatt
     1681 taaaagcgga tacattgctg ccaaactatt attagaatcg atgtctgaaa aggcacagat
     1741 attagtaatc agaacacagc gaaaaggctc cgtttcgaat cagactcttt ccagaaataa
     1801 tggtttcttg caatatattc aggaatttaa tcttgagaat cagtacgaat taattaatgt
     1861 agagttcaaa aatgatgatg aggaatcgaa ccggaaaata ttatctgaag tttttaatgc
     1921 aaattccaac attaagggag ctataacgtt taattccaag gtgtacagac ttgcaatgca
     1981 cttagatgct ttaaatcata ccgatgttcg tttaataggt tatgatttgc tggatcaaaa
     2041 tgttaactat cttcagcaag gagttatttc ttatttaatt gcacaacgtc ccgacaaaca
     2101 agcttatttt actgtgcgcg atatgtgtaa agaacttata tttaaacagg aaatcaaaaa
     2161 aataaattat gtaccaattg atattttgat taaagaaaat attgaggatt acatgcattt
     2221 taccgaataa ttttcaatat taaattgtaa tacattaacc attaaatttt tttatcatga
     2281 aattaggaaa attcagttta ggtatt
//
LOCUS       DATDNM010000676         2964 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1576732, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000676 DATDNM010000000
VERSION     DATDNM010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2964
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1576732"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            263..>2964
                     /locus_tag="VI413_11455"
     CDS             263..>2964
                     /locus_tag="VI413_11455"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEY6915284.1"
                     /translation="MNSFLYRIAQTYYSQHKESISDFSFVFPNRRAGLFFQRYLSEIA
                     QKPIFSPEILTINECFSSASSWQSADRLSSLFLLYRIYKEQSGSDESFDSFVFWGEML
                     LSDFNDVDKYRVDAKQLFTNITELKQIDQLFNVFSEKQVEAIRQFWSNFVPVTEGKTQ
                     EDFVATWKILLPVYEQFRAELLVENTASEGMICRDVADRLRAKEDIPEFAGKQFVFVG
                     FNALNPCERTLMAELQKREQADFYWDYDAEELRDTDNQASRFYTENLHVFPSKYPLEP
                     IIESLKDKEIELIAVPSAVGQSKQIYSILNKLYPRENTDKSWINTAVVLPDESLLVPL
                     LHSLPTQIGKVNVTMGFPLKSTPVSGLIEHIFELQRRMRVSGERISFYHQTVSNILNH
                     QYISLLCNAEANRLTHQMAVNNWIYIDANELNKNELLSTIFVPQTDTQAFLPYLMQIL
                     RSLQNGWQQASDETHNYQLECDFLYQYYVTINRMSDILKAKPVEVDMNMDTLVRLTRQ
                     LTAGITIPFVGEPLDGLQVMGVLETRGLDFENLIITSFNEGIFPTKNSTNSFIPYNLR
                     RGFELPTTEHQDAITAYNFYRLIHRAKRIFFLYDSRTEGMQTGEVSRFMHQLYYHYGV
                     EAKKKSISFDIGFDNAQAIQVEKTPAVMEKLLRFTSTEEYSPSLSASSINTYIDCPLQ
                     FYLTKVEVVEQAEEVVETVEANMFGSLFHKVMENLYLPYKGQMIQSDDFDLMIKNTLK
                     IDNEIHSAFNTEYFKRKTGTFIPLEGNNLLIASVLRKYILQVLKVDKKHAPFRYISSE
                     ERCSIQYPIHSGELNVNLKGFIDRIDEKEGRLRILDYKTGTGKLDFKNLNEVFEHNKE
                     NRPKFVLQTFLYGIFYKEQAEGKKITPGIYYIRDVFKDEFDTEL"
BASE COUNT          910 a          622 c          589 g          843 t
ORIGIN      
        1 ttgcaggcga attcttttta ttttggtttt tccctatcgg agtctggatt gtacaaccaa
       61 aaatcaataa aatgattgaa gaaccgattg tcgaataatc ttagccatag ttcattctac
      121 tttcgcttct gggatgcaca ggttaataac ataaacggtt tttcaatcgt ttcaaatgtc
      181 aatgcaaatt tctgacaaca aaaaaaaatt gtcggattca attcaaaatt gtaaatttgt
      241 aaattgaaaa aatccaaaac gcatgaattc ttttctctac cgcatagctc aaacttatta
      301 ttcacaacac aaggaatcca ttagtgattt tagttttgtt tttccaaatc gtcgcgcagg
      361 gctatttttc cagcgctatc tttccgaaat agcgcaaaag ccaattttct cacctgaaat
      421 actcaccatt aacgaatgtt tctcgtctgc ttcaagctgg caaagtgccg accggctgag
      481 ttcgcttttc ctgctgtacc gtatttacaa ggagcaaagc ggcagcgacg aaagcttcga
      541 ttcctttgta ttctggggcg aaatgttgct ttccgatttc aatgatgtgg ataaataccg
      601 cgtggatgcc aaacagcttt tcaccaacat taccgaatta aagcaaatcg atcaactttt
      661 caatgtattt tccgaaaaac aggtagaagc cattcgccag ttttggagca actttgtgcc
      721 ggtaacggag ggaaaaacac aggaagattt tgtagccacc tggaaaattc tgctaccagt
      781 ttacgaacaa ttcagggctg aactactagt tgaaaataca gctagcgaag gcatgatttg
      841 ccgcgatgtt gctgaccgct tgcgtgcaaa agaagatatt cccgaatttg ccggcaagca
      901 atttgtattc gttgggttca atgctctcaa tccctgtgaa cgcacgttga tggctgaact
      961 tcagaaacgg gaacaagctg atttttactg ggattatgat gccgaagaac tccgcgacac
     1021 ggacaatcag gcttcccggt tttatactga aaacctgcat gtttttccgt caaaatatcc
     1081 gttggagcca attatagaat ccctgaaaga caaggagatt gaactgattg ccgtcccatc
     1141 ggctgtgggt cagtccaaac agatttattc tattctgaat aaattgtatc caagggagaa
     1201 tacggacaaa tcgtggataa ataccgccgt ggtgctcccc gacgaaagtt tgctcgttcc
     1261 cctgctccat tctctgccca ctcaaattgg caaagtgaat gtaactatgg gttttccact
     1321 taaatctacg cctgtttcgg gtctgattga acatattttc gaactgcagc gccgcatgag
     1381 agtttcgggc gaacgcattt cgttttatca ccaaactgtt tccaatatcc ttaaccatca
     1441 atacatttct ctgctttgca acgcagaagc caatcgatta acccaccaaa tggctgtcaa
     1501 caactggatt tacattgatg ccaacgaact gaataaaaac gaattactgt caactatctt
     1561 tgttccgcaa actgatacac aggctttttt gccatattta atgcaaatcc tccgcagttt
     1621 gcaaaacggc tggcagcaag cttctgacga aacacacaac tatcagttgg aatgtgattt
     1681 tttatatcaa tattacgtga ctatcaaccg tatgtccgat attctcaaag ccaaaccggt
     1741 ggaagtggat atgaacatgg atacattggt acggttgaca cgacagctga cagcgggcat
     1801 taccattcca ttcgtaggtg aaccgctcga tggacttcag gttatgggcg tattggaaac
     1861 ccgtggcctg gactttgaaa atctgatcat tacctcattc aacgaaggta tttttcctac
     1921 aaaaaatagt acaaacagtt ttattccgta taatctgcgc cgcggttttg aactgcctac
     1981 tactgagcat caggacgcca ttaccgccta taacttctat cggttgattc acagggctaa
     2041 acgtattttc ttcctttacg attcgcgtac agaaggtatg cagaccggcg aagtaagccg
     2101 atttatgcat cagctgtatt accattacgg tgtcgaagcc aaaaagaaaa gtatttcgtt
     2161 tgacattggt tttgataatg cgcaagccat tcaagtagaa aaaacaccag ctgtaatgga
     2221 gaaactgctc cgattcacct ctacagaaga gtacagtcca tcactttcgg ccagttccat
     2281 aaacacttat atcgattgtc cgttgcagtt ttatcttact aaagtggaag tcgtggagca
     2341 agctgaagaa gtggtggaaa cagtggaagc caatatgttt ggcagcttgt ttcataaggt
     2401 tatggagaat ctctatctgc cttacaaagg acagatgata caatccgatg attttgacct
     2461 aatgattaaa aatacattaa aaattgacaa tgaaatacat agcgccttca acactgagta
     2521 tttcaaacga aaaaccggca catttattcc gctcgaggga aacaatttac taattgccag
     2581 tgttctgcgg aagtatattt tgcaggtatt gaaagtagac aaaaaacacg ctcctttccg
     2641 ctatattagt tccgaagagc gttgcagcat tcaatatccg attcatagtg gagaactgaa
     2701 cgtaaatcta aaaggattta tcgaccgtat tgacgaaaag gaaggtagac tgcgcattct
     2761 ggattataaa accggaacag gcaaactgga ctttaaaaac cttaacgaag tatttgaaca
     2821 caacaaagaa aaccgtccta aatttgtatt gcaaaccttt ttgtacggca tattctataa
     2881 agaacaagca gaaggaaaga agattacacc cggcatttat tatatcaggg atgtgtttaa
     2941 agatgagttt gacactgaac tgaa
//
LOCUS       DATDNM010000677         2355 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_402435, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000677 DATDNM010000000
VERSION     DATDNM010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402435"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..815
                     /locus_tag="VI413_11460"
     CDS             <1..815
                     /locus_tag="VI413_11460"
                     /inference="COORDINATES: protein motif:HMM:NF028443.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5108 domain-containing protein"
                     /protein_id="HEY6915285.1"
                     /translation="LNMYVAYHLFNQQISYSSLAYFAQTDTKRSKNYNTMATDQLLNI
                     SELNKVLYANYNTTTSTGVKFLAVNKNCKNGVVHIVDGVLPVRIPKPTTVQWELTDYS
                     VLASTLSKYRTAGLTSNYSSQLLPEIATCYKWLSVPDSKPGLYYVIANKNDATPYKAL
                     NYDYLRLNLGTYGWVEMTSPTIVAGTYKVTIEHYNLLAPQAQGKIWFIIDGVYFGSQV
                     ATQGASKTANQFLKTQIGTGTITFSTTTKHTVRILASDNYTSDLDCLTFTPN"
     gene            871..>2355
                     /locus_tag="VI413_11465"
     CDS             871..>2355
                     /locus_tag="VI413_11465"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6915286.1"
                     /translation="MKKIYYLICMVLLLTSCNERWGEYFGAAATEEELDMTIVEYLNT
                     HPEYSKFYNMLKKTGLDKELSKDQQITVWVVKDSAMDVSGVSENDTLRMQYHMNHLPF
                     LRTDLKTGLRIRSLNGIYFQITKNDDLIFANASLVKKSVKLKDGVVHELSSLMKSRIN
                     IYEYLKNLDDDYSIIRDTIFKYNVEKFDRANSTPIGVDKTGNTLYDSIFYTYNPLFET
                     VQFNSEFQQFSVFLPSNDVINNCFETLKSTYAKMGKTVAKSDSTIALKWIKEAMFYKG
                     ELKSTDFNTKDINSAFARVWRPTVQQLDLNNPEYMSNGIVYKMTKVKIPNNVILSRIK
                     SLVEYWEYQDKVYPDPEDLYTFVGVKGNPSIYVADATPKPAILPNYIVLNVPGDASVE
                     NELSVEFPPLEKYFSAEDGKYHARVMQVPTGEYNLYMGFWSSSHPFVNIYFNGNLVKS
                     NIKVTDTTPWNYDRVTETDKDLNPVNGVAKWDGLGGLVGVVTVDG"
BASE COUNT          773 a          437 c          467 g          678 t
ORIGIN      
        1 cgttgaacat gtatgtggct tatcacttat tcaatcagca aatatcttat tcgtcgctgg
       61 cttattttgc acaaacagat accaaacgct cgaaaaacta caacacaatg gcaacagatc
      121 agctcttgaa catttcggag ctgaacaaag tgctttatgc caattacaat actacaactt
      181 caaccggagt aaaattcctt gcggttaaca agaattgtaa aaatggtgtg gtacatattg
      241 tggatggagt attgccggtt agaattccta aaccaacgac tgtacaatgg gaattgactg
      301 attattcagt gcttgcatcc actttatcga aatatcgcac tgccggtttg acttcgaatt
      361 attcaagcca gttattgccc gaaatagcaa cttgctacaa atggctatcg gttcctgatt
      421 caaaacccgg attatattat gtaattgcca ataaaaatga tgcaacacct tataaagcgt
      481 tgaattatga ttacttgcgc ctgaatctcg gcacatacgg ttgggtggaa atgaccagtc
      541 ccacaattgt agccggaacg tataaggtca ccattgaaca ttacaacctg ctggctccac
      601 aagctcaggg aaaaatatgg ttcattattg atggcgtgta tttcggaagc caggttgcaa
      661 cgcaaggcgc ttcgaaaaca gccaatcaat ttctgaaaac ccagattggt acgggaacaa
      721 ttactttcag caccacaacg aaacatacag tgcgaatatt agcgtcagat aattatactt
      781 ccgatctcga ttgtctaaca tttactccta attgattttt attgtattcg ttctaaaagt
      841 cataagtgta aaaaaataaa tttaaaacaa atgaaaaaaa tatattattt gatttgtatg
      901 gttctgctgc tcacttcgtg taacgaaagg tggggcgaat attttggtgc tgctgcaaca
      961 gaagaagaac ttgatatgac catcgtagaa tatctgaata cacatcctga gtattcaaaa
     1021 ttttataata tgctcaaaaa aacagggctg gacaaggaac tttccaaaga tcagcaaatt
     1081 actgtttggg tagtaaaaga cagtgcaatg gatgtatccg gagtatcgga aaacgatacc
     1141 ctgaggatgc aatatcacat gaatcatttg ccatttttgc gcaccgattt aaaaacgggg
     1201 ttacgcattc gctcgctcaa cggcatttat tttcagatca ctaaaaatga tgatttaata
     1261 tttgcgaatg cttcattagt aaagaaatct gtcaagctaa aagatggcgt cgtgcatgag
     1321 ctttcatcgt taatgaaatc gagaatcaat atttacgaat acctgaaaaa tctggatgac
     1381 gattattcaa ttatccgtga tactattttc aagtacaatg tggagaaatt cgacagggct
     1441 aactccactc ctattggtgt ggataaaaca gggaatactc tttacgattc aattttctat
     1501 acctacaatc cattattcga aacagttcag ttcaattcgg agtttcaaca attttccgtt
     1561 tttcttccaa gcaacgatgt tataaacaat tgtttcgaaa cgctcaaatc tacctatgcg
     1621 aaaatgggaa aaacggtggc caaaagcgat tccacaattg ctctgaaatg gataaaagaa
     1681 gccatgtttt ataaaggtga attgaagtca actgatttta atacaaaaga tatcaactcg
     1741 gctttcgcac gggtttggag gccaacagtt cagcaattgg atttaaacaa tcctgaatat
     1801 atgagcaatg gtattgttta caaaatgaca aaagtgaaaa taccaaacaa cgttattttg
     1861 tccagaataa aatcgttggt ggaatactgg gaatatcagg ataaagtata tcccgatccg
     1921 gaagatttat acacgtttgt aggagtaaaa ggaaatccgt ctatttatgt ggcagatgct
     1981 acgcctaaac cggctattct ccccaattac atcgtgttga atgttccggg tgatgcgtca
     2041 gttgaaaatg agttatccgt tgagtttcct cctttggaaa aatactttag cgccgaagat
     2101 ggaaaatacc acgcacgtgt aatgcaggta ccaaccggag aatataacct gtatatggga
     2161 ttctggagtt caagtcatcc atttgtcaat atttacttca acggaaacct ggtaaaaagt
     2221 aatattaaag tgactgacac cacaccctgg aactacgacc gtgttactga aacggataaa
     2281 gacctgaatc cggtcaatgg tgttgccaaa tgggatggac ttggtggtct ggttggggta
     2341 gttactgttg atggt
//
LOCUS       DATDNM010000678         2534 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_81394, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000678 DATDNM010000000
VERSION     DATDNM010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81394"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..111)
                     /locus_tag="VI413_11470"
     CDS             complement(<1..111)
                     /locus_tag="VI413_11470"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005859889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEY6915287.1"
                     /translation="MKRIQIINGPNLNLLGKREPTVYGNQTFEAYYEELKT"
     gene            complement(108..389)
                     /locus_tag="VI413_11475"
     CDS             complement(108..389)
                     /locus_tag="VI413_11475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET transporter"
                     /protein_id="HEY6915288.1"
                     /translation="MAFDIVIVGYLAGFCTAVAQFPQAYKVIKTGETQSISAGMYTIM
                     TLGIFFWFTYGVLIPDLPMIIANGICLIPSIYILYITIRNTQRTKKQNL"
     gene            613..1080
                     /locus_tag="VI413_11480"
     CDS             613..1080
                     /locus_tag="VI413_11480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915289.1"
                     /translation="MSFQKKIELFRPGIPKRYLLFVAALMWTVGGGMLFMRGFSMLLL
                     FHRLLWLKVFIGIIAGLMFYFLLFSKISFKHTQRIIRMNVEKPFIFSFFNLRSYVLMA
                     LMISMGVMLRSTGIVPAEYLSVLYVTMGVPLTISAFRFYYYGFRFQLAVALLG"
     gene            1171..>2534
                     /locus_tag="VI413_11485"
     CDS             1171..>2534
                     /locus_tag="VI413_11485"
                     /inference="COORDINATES: protein motif:HMM:NF020337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CotH kinase family protein"
                     /protein_id="HEY6915290.1"
                     /translation="MKQNLLCFLTLFFFSTFFAFSQELPHYELTILPANLDSMNAHPA
                     DEVYYPAVFKVGDLSYNVEARYKGSTTLNYPKKSWAIKFNNSTNYFGVSRINLHADYK
                     DHSSMRNFLIMKLFAFMGSPASQIKHVTYRVNGEEYGVFTQVEQIDNEYLARNGRSVV
                     SLYKSNNHAALMAPAVRDEYYRIIWDIEAGGDPTYNELRVLFNKCLYWSKADFDANIS
                     NEIDVDNFLNFFAVHFVFTDMDNFTKNIFLNKNSTSSKFELFPWDNEGSFGNSAYGVF
                     DSTFVNYNMRDSHTPEYEVVFQRLLENPTYKSIFRDKVNRILTDGFSYVDTLMDNTYQ
                     KIKSSVYADTHKEATNEEFETEFTRLKWFMANRKASLQSNELPQRNVLTDFYCSNPFP
                     NSANPLVTFRIVSPVKQPVNMFFADSVNFDSMGQPFKFSRFELFDDGLHDDLQANDLI
                     YGNT"
BASE COUNT          757 a          440 c          485 g          852 t
ORIGIN      
        1 agtctttaat tcttcgtaat acgcttcaaa ggtctgattc ccatatacag tcggctcacg
       61 tttccccaac aggttgaggt ttggtccgtt aataatctga atgcgtttca taaattttgt
      121 tttttggttc gttgcgtatt acgaatggta atatagagaa tatatataga aggaattaag
      181 caaattccat tcgctatgat cattggcaag tcgggaataa gtacaccgta agtgaaccaa
      241 aagaaaatcc ctaacgtcat tattgtatac attccagctg aaatactttg ggtttcacct
      301 gtttttatca ctttgtaagc ttgaggaaac tgcgctacgg ccgtgcaaaa gccagctaaa
      361 taaccaacaa taacgatgtc aaatgccata gaactaattt tgcgcaaaag tacaaaaaaa
      421 atagcaaggc acaaaatctg taagaatgtg cagtttatga atttcaatta tttgtagttt
      481 ctgtaacaaa atagcattaa aatttcccgg ataataataa attcaaacct ttatgccatg
      541 aatatggtat ttttatgcgt aaatattatc aaaaaaaagt gtatttttga agaacaaaaa
      601 tttatcatac taatgagttt tcagaaaaaa atagaacttt tccgaccggg tattcccaaa
      661 cgttatttac tttttgtggc tgcactcatg tggaccgttg gcggtggcat gttattcatg
      721 cggggattca gcatgttgtt gctttttcac cgtctgctct ggctcaaagt ttttattggt
      781 attatcgccg gattaatgtt ttattttttg ctcttctcca aaatatcttt caaacataca
      841 caacgcataa taaggatgaa tgttgaaaag ccattcattt tttctttttt caatttaagg
      901 agttatgtgc tgatggcatt gatgattagc atgggagtca tgttgcgttc aaccgggatt
      961 gtgccagcag agtatttatc ggttttatat gtaacgatgg gggttccact cacgatatcg
     1021 gcatttcggt tttattacta tgggtttcga tttcaactcg ctgtggcatt attgggttga
     1081 aaattttaaa agattaaatt tacagattgt tttgaacaaa tcacattatt ctacaattgt
     1141 aatatgtact cctcacaata aagcgttatc atgaaacaaa atttactctg ctttttgact
     1201 ttgttctttt tctccacgtt ttttgcattt tcgcaggaac tacctcatta tgaactgacg
     1261 attttacctg ccaatctgga ttcaatgaat gctcatcctg ccgatgaggt atattatcct
     1321 gccgttttca aagtgggcga tttaagttat aatgttgagg cacggtataa aggatcaaca
     1381 acgctgaatt acccaaagaa aagttgggca ataaaattca ataattcaac taattatttc
     1441 ggtgtcagtc gtataaatct tcatgccgat tataaggatc attcatcgat gcgcaatttt
     1501 ctaattatga aattgttcgc atttatgggt tcacccgcat cgcaaatcaa gcatgtaaca
     1561 taccgggtga acggagaaga atacggggtt tttactcagg tggagcaaat tgataatgaa
     1621 tatctggccc ggaatggaag gagtgttgtt tcattgtata aatccaacaa tcatgcagca
     1681 ttgatggcgc ctgcagttcg tgatgagtat taccgcatta tctgggatat tgaagcgggt
     1741 ggagacccga cttacaatga attgcgtgtt ttgtttaata aatgtctcta ctggtcgaaa
     1801 gcagattttg atgccaatat ttccaatgaa attgatgttg ataatttcct gaatttcttt
     1861 gctgttcatt tcgtttttac agacatggat aattttacaa aaaacatttt tctgaacaaa
     1921 aacagcactt cttccaaatt tgagttgttt ccctgggata atgagggctc gttcggaaat
     1981 tcagcttacg gagtttttga ttccacattt gtaaactaca atatgcgcga ttcgcatact
     2041 ccggagtacg aagtcgtttt tcaacgattg ttggaaaatc caacatataa atccattttc
     2101 agggataagg ttaaccggat tctgactgat ggatttagtt atgttgatac tttgatggat
     2161 aatacttatc aaaaaataaa gtcgtcggtt tatgccgata cacataaaga agctactaac
     2221 gaggaatttg aaactgaatt cacccgtttg aaatggttta tggccaacag aaaagcttct
     2281 ctgcaaagca atgagttacc acaacgaaat gtgttaactg atttttactg ctcgaatccg
     2341 tttccgaaca gtgccaatcc gttggttact ttccgaattg tgtcaccggt caagcagcct
     2401 gtaaatatgt tttttgccga ttcagtcaat tttgattcca tggggcagcc ctttaaattc
     2461 agtaggtttg aactcttcga tgatggtttg cacgatgact tacaggctaa tgaccttatt
     2521 tatggcaata ccat
//
LOCUS       DATDNM010000679         2067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1043572, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000679 DATDNM010000000
VERSION     DATDNM010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1043572"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..583
                     /locus_tag="VI413_11490"
     CDS             <1..583
                     /locus_tag="VI413_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEY6915291.1"
                     /translation="DDRVAAGEGFGTHPHDNMEIISIPLFGDLEHKDSMGNHGVISTG
                     EIQVMSAGTGIFHSEFNKNKDKETRFLQIWVFPNKKNVTPRYDQISLDEIEKPNELYQ
                     ILSPNPNDQGVWIHQNAWFHLGDLSEGWEGKYELKDKKNGVYFFVIEGNVNVAGQELK
                     SRDGLGVSEIDSIEIKSSAITKLLVMEIPMTTN"
     gene            630..1088
                     /locus_tag="VI413_11495"
     CDS             630..1088
                     /locus_tag="VI413_11495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEY6915292.1"
                     /translation="MKSIKQFLATDQQSWSLLLVRIALGIVILPHGMQKALGLFGGYG
                     FAGTVGFFQSMGMPFLIGTFVILAEFVGSIGLILGFGTRFMAFSVGLTMAGAAVLGGH
                     LNNGFFMNWFGMQKGEGLEYFILVVGMALALLISGSGKFSFDNLILKKIK"
     gene            1302..>2067
                     /locus_tag="VI413_11500"
     CDS             1302..>2067
                     /locus_tag="VI413_11500"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="slipin family protein"
                     /protein_id="HEY6915293.1"
                     /translation="MKNVNSVPALLFVLITALGICVAYAVNGDLSSSSSLTIVTFFFV
                     VGVLVAWSTKVASQWSRAIVLRLGKYHSLRGPGIFFIIPIIDSIPYWIDIRVISTAFK
                     AEKTLTKDTVPVDVDAVLFWKVIDPKKAALDVADYYSAISWASQTALRDVIGKTMLAD
                     MLEGRDKISSLLQTIIDERTEPWGINVISVEVKDVLIPQGLEAAMSMQAQAERERQAR
                     VILGDSERQIAEMFNEASKSYADNPTAFHLRAMNMLY"
BASE COUNT          619 a          335 c          458 g          655 t
ORIGIN      
        1 cgacgaccgg gttgctgccg gcgaagggtt cggaactcat ccacacgaca atatggaaat
       61 tatttccatt ccacttttcg gcgatttgga acataaagat agcatgggca atcatggcgt
      121 aatcagtacc ggcgaaattc aggttatgag tgccggaacc ggtatattcc acagcgaatt
      181 caataaaaac aaggataagg aaacaaggtt tcttcaaatt tgggttttcc cgaataaaaa
      241 gaatgtaacg ccgcgttacg atcagatttc gttggatgag attgagaaac ccaatgagtt
      301 atatcagatt ctttcaccaa atccaaatga tcagggtgtg tggattcatc agaatgcatg
      361 gtttcacctg ggtgatttgt ccgaaggctg ggaaggaaaa tatgaactga aagacaagaa
      421 aaacggtgtc tatttctttg taattgaagg aaatgtaaac gttgcaggac aagaattaaa
      481 atcaagggat ggattgggtg tcagtgaaat agattcaatt gaaataaaat cctctgcgat
      541 tacgaaatta ttggtaatgg aaattccaat gactacaaat tgaaatataa aatattagaa
      601 atcaaataaa taattaaaaa atagaaaaga tgaaatcaat caaacaattt ttggcaacag
      661 accaacaatc atggtcatta cttttagtac gtatagcgtt aggtattgta attttaccac
      721 atggtatgca aaaagctctt ggacttttcg gaggttatgg ttttgccgga acagtaggct
      781 ttttccaaag catgggaatg ccatttttaa ttggcacatt cgtaatatta gctgaatttg
      841 tgggtagtat cggacttatc ctaggttttg gtacacgttt tatggcattc tcagttggtt
      901 taactatggc tggagcggca gttttaggtg gtcacctaaa caacggattt tttatgaact
      961 ggtttggcat gcaaaaaggc gaaggtctcg agtattttat tcttgttgtt ggaatggctc
     1021 tggccctttt gataagcggt agtggaaaat tctcatttga taatcttatt ttgaagaaaa
     1081 ttaaataaga gaaaaaatga gtttacaaag ggtgggtttg caaagacctg ccctttgttt
     1141 ttcagtgctt tatctgttct tattgaaaac ttatcattca agttaattgt ttatatataa
     1201 cagtatttga gatgccgcat tcattttgct ccatcttgac attcaaaaat aatttgtcta
     1261 ccatagatat aaaatccgta accttttaaa tttgaaaaga aatgaaaaac gttaattctg
     1321 ttccggctct tctttttgtt ttaatcacag ccttaggtat ctgtgtagct tacgcggtaa
     1381 atggtgactt gtcatcatct tcaagtttga ctattgtaac attttttttt gtggttgggg
     1441 ttcttgttgc ctggtcaaca aaggttgcca gccaatggag tcgtgccatt gtactccgat
     1501 tgggtaagta tcactctttg agaggtccag gaattttctt tattattcct ataattgata
     1561 gcattcctta ttggattgat atccgtgtta tcagtacggc tttcaaagca gaaaaaaccc
     1621 ttacgaaaga tacagtcccg gtggatgtag acgcagtatt gttttggaaa gtaattgatc
     1681 ctaaaaaggc tgctctggat gtggctgatt actacagtgc tatcagttgg gcctcgcaaa
     1741 ctgctcttcg tgatgttatt ggcaaaacaa tgcttgctga tatgcttgag ggacgtgaca
     1801 aaattagttc gttgttacaa actataattg acgaacgaac cgagccttgg ggtattaatg
     1861 ttatttcggt ggaagttaaa gatgtgctta ttccgcaggg attggaagcg gctatgtcta
     1921 tgcaggctca ggctgaacgt gagcgccagg ctagggtgat tctaggcgat tcagaacggc
     1981 aaattgctga aatgtttaat gaagcatcta aaagttatgc cgataacccg actgcttttc
     2041 acctgcgtgc catgaatatg ctttatg
//
LOCUS       DATDNM010000680        10724 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_296191, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000680 DATDNM010000000
VERSION     DATDNM010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 10724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10724
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296191"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1340
                     /locus_tag="VI413_11505"
     CDS             <1..1340
                     /locus_tag="VI413_11505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 125 protein"
                     /protein_id="HEY6915294.1"
                     /translation="SFPQVRIEKSKRNFVSTAIDQKIEQMQKTIQDPELAWMFGNCFP
                     NTLDRTVQFSMKDGKPNTFVITGDIYAMWMRDCSAQVWPYMPFMKEDKNLQNLIAGVI
                     NRQAESVLIDPYANAFNFGKEGGEWMSDNTAMRPELHERKWEIDGLCYVIRLSYNYWK
                     QTGDLSCFDAKWQSAMELIVKTFKEQQRKTSQGPYKFTRRTEKASDTQFGDGYGNPVR
                     PTGLICSMFRPSDDATTYAYLIPSNAFAVVSLRHLAEMQTAIKQNQAFAAECTSLANE
                     VDAAIQKYAIVKHPKYGKILAFEVDGYGNYLMMDDANVPSLLSLPYLGYMSTKDKIYQ
                     NTRKFVLSVDNPYFYKGTAGEGIGGPHVGPDMIWPMAIIMKALTSNDEKEIADCLRML
                     KNTHGGTGFMHETFNKDNPAKFSRSWFAWANTLFGELLIKVEKEHPALLQKTY"
     gene            1447..5691
                     /locus_tag="VI413_11510"
     CDS             1447..5691
                     /locus_tag="VI413_11510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010535488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 78 glycoside hydrolase catalytic domain"
                     /protein_id="HEY6915295.1"
                     /translation="MKKTVALLGVILAFSISALAQVTPEVRNLRTEYLQNPVGIDVKT
                     PRFSWEILSSERGAKQTAYEITVSTDKTGSDPIWSSGKVESDKSVNNVYKGAALAPST
                     RYYWHVDVWNNNSTKISSTEASFFETGLLDSGWGDAKWIKATTLKQGETAAAAITNYT
                     ISMDFQLNDIAAGPCFGAKDANNFFMWQINIETGRVRFRPHSWLNGNAVCHENKDITS
                     FINMQKGVTYTLKIEVRGDKASTYINGILIDADRVNPRGGNYGYGNLGFRSAQAETST
                     TIESASFDNIKVTTTEQSIEKTLFDEQFSNATSFAFTAGTVTNGRLLVNMGNTISWQK
                     VGNARFTLETDMTILNQNAGIIFGATDINNMYMWSINTKDQTYPLIRRHIYTGNNPVA
                     SDVSIAAYYSKADLIGKERHVKIDIENNVIKTYIDGVLVDTYTDTSGALKNGHVGFRA
                     YNGDNSTDEVTMYDNIVLTNYIANASTGVIEPVIAFSENFENGSNAFEGSETVDVSGN
                     TKLKMYAKSADLRVLQGVSTGIPMFRTKFMLDKQIKSAKIYSSALGVYDLFINGKRVG
                     TSTDDGKVIYDELKPGWTDYNKTVQYSTYDVTSLLTSGANAIGAHVAPGWWKGGIAHG
                     QYGDKEISFIAKLLIQFSDGTTQTIVTDPSWLTNTTGPIRMGDIYNGETYDARKESDW
                     KNADYDDSAWLQTGVFSGFIGKLKATVGPTVRLRPELNITPVSINVYEGNKANGQTYG
                     AINTITTINGNGVVQLKKGQTAIYDLGQNMAGWVKIKAKSAAGTTLKIRFGEILNDNG
                     ALSRGNDGPAGSLYTANLRTAKATLTYIFKGNEDAETYNPSLTFFGFRYCELTASQDA
                     EIQSLTAEVVGSATEEGSTFKTSSALVNKLYNNVIWGQRSNFLSVPTDCPQRDERQGW
                     TGDTQIFSKAAAYNADVASFFHKWMGDMRDSQRSDGAFPSTAPVIWGGFGQGAWAEAG
                     IIVPWNVYLMYDDAGIIEENFASMEKYMQFLVAQAGGGYTYNGAGVDFGDWVAYEAMD
                     NRYVSVCYYAYAAQLMSKMAKVLSKATGDIYDFKSTSYASLYNKIKAEFQTRYVNADG
                     TLKQVSQTAYLLALKLGLFPDDVTKNNGITYLTQKIANNGNKLSTGFIGTGILNQTLS
                     QFGATNTAYNLLLQRGNPSWLYSIDQGATTIWERWDSYTIEKGFQTVVMNSFNHYSYG
                     AVSEWMYRFVGGIEADEATPGFKHFILQPNPDKRTTLPQGQERITSAEAKYDSYYGDI
                     KSAWAVRTDGNLTYTATVPANTTATLYLPLGDVSDVVYEGAVLAENAEGVTFVKKENG
                     KAVYELKSGTYSFGLNVPAITATKPVIEKKNFIFFPNPVHYKLTIGSEPVNYIISDLA
                     GNQIKSGIGASVIVTDLCAGIYLLKTENKTCKFIKK"
     gene            5858..8143
                     /locus_tag="VI413_11515"
     CDS             5858..8143
                     /locus_tag="VI413_11515"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005796688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GH92 family glycosyl hydrolase"
                     /protein_id="HEY6915296.1"
                     /translation="MKQLFIVTAFVLCNLFASAQQTNATYVDFVNPLIGSQSNHSLSN
                     GNTYPAIARPWGMNFWVPQTSTMGDGWVYNYTDTHIRGFKQTHQPSPWINDYGQFSLM
                     PTMGLKIDENKRASWFSHKAEIVKPYYYSVYLADYDITTEITPTDRAAYFRFTFSESD
                     SSTVVIDAFDRGSYIKIILEENKIIGYTTRNSGGVPENFKNYFVVQFDKKVKFSSIWK
                     NGALCDGNELAENHVGAVVGFKTRRGEIVQAKVASSFISFEQAERNLNELSGKTFDQV
                     KADGRSKWNETLGVVDIKANVDQMRTFYSCLYRSTLFPRMFYEFDAAGKPVHYSPYNG
                     KVLPGYMFTDNGFWDTFRAQFPLINLFYPSMNAKIQEGLLNTFKESGFLPEWASPGHR
                     DCMVGNNSASIVSDAILKGITPKEMQLPLYEAMKTSANSNHPQIRSTGRRGVEYYNKL
                     GYVPYNVGINESTARTLEYAYDDWCIYQVGLFLNRPKEEIEVYKNRSRNFQHMFDPSH
                     NLMRGKNADGTFQSPFNPLKWGDAFTEGNSWHYTWSVFHDINKLKSLMGGEKAFAGML
                     DSVFALPPVFDDSYYGGTIHEIREMQIMNMGNYAHGNQPIQHMIYLFDYARQPWKTQY
                     WAREVMDKLYLPTPDGYCGDEDNGQTSAWYIFSSLGFYPVCPGTDQYIVGSPMVQKAT
                     ISLENGKKITIDAAGNNKDSRYIQSLVVNKKPYTRNYLNYSELQKGATLLFNMGSKPN
                     KNRAITVNDLPYSYTAVEADK"
     gene            8479..>10724
                     /locus_tag="VI413_11520"
     CDS             8479..>10724
                     /locus_tag="VI413_11520"
                     /inference="COORDINATES: protein motif:HMM:NF019136.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6915297.1"
                     /translation="MKKALLALLIIICVFNATASRSLPFVKYQVENGLSHNTVWCVLQ
                     DSYDFMWFGTSDGLNCFDGKNFRIFRSNSQEKSSLGNNFIQSLFEDEKHNLWIGTNRG
                     LYHFERKTETFTYFDLKTEDGVLISSNVSKIIKTSTGTMWFATLGQGVFIYNPQTKTL
                     VQNSTYSSFVVSLLQTPNGNIFATSRLNGLICFDKNGKYLRSYVPNESKSGLNDIEIS
                     TLCYQNNALWFNVGTFGFFKLDFKTGKMKAIASENNLPVVSNIRKIFAYSANQLWVGG
                     DNGLYLFDIQNERFSRLDDPSNPKSLNDQSVYDIARDREGGMWVSTYFGGVNYLSTNL
                     KPFEHYYSQFQTGSISGKAISQFCEDAAGNIWIATEDGGLNYLNTKTQTAQIYKPAGA
                     KNSISYHNVHSLLLDNDKLWIGTFSRGIDILDLKTKKFHNYQHRRDDAKSVCDNAIYT
                     LFKDSQGNILVGTAWGLSKYDRASDSFSMVDEIGPMVHVFNMIEDSRNNLWIATYNAG
                     VFRHNLKTNKWSHYTHVANDPQSVTANSVISVFEDKNHTVWFGTEGGGLCSFNNKTEK
                     FTAFDPENKLLPNPVIYSIQQDEFDNFWIASNAGLVRINPYTKKNRLVFTKADGLQSN
                     QFNFRSSLRAHDGKMYFGGINGFNAFYPKYFTQNKYIPKVRIVDFKLFNKRVNVNDEG
                     SPLTAPIYDLEKLTLRYNQNTFSFTFAALSFQAPEKNQYTYMLDGVDKTWNVTDNGNN
                     TVSYTNLPP"
BASE COUNT         3442 a         2133 c         2211 g         2938 t
ORIGIN      
        1 aaagctttcc acaggttagg attgagaaat caaaacggaa ttttgtgagt accgctattg
       61 accagaaaat tgaacaaatg cagaaaacca ttcaggaccc tgaactggcc tggatgtttg
      121 gaaattgttt tccgaataca ctcgaccgta ccgttcagtt ttcgatgaaa gatggtaaac
      181 cgaacacgtt cgtaatcaca ggcgatattt atgccatgtg gatgcgcgac tgttcagccc
      241 aggtttggcc ttatatgcca tttatgaaag aggataaaaa cctgcaaaac cttattgccg
      301 gagttattaa ccgccaggcc gagagtgttt tgattgatcc gtatgccaat gcattcaatt
      361 tcggaaaaga aggtggcgaa tggatgagcg acaacactgc catgcgtccg gaattgcacg
      421 aacgcaaatg ggaaattgat ggtttatgtt atgtaatccg cctgagttat aattattgga
      481 aacaaacggg cgacttgagt tgctttgacg ctaagtggca aagtgccatg gaattgattg
      541 taaaaacttt caaagaacaa caacgtaaaa cctctcaggg cccttacaaa tttacacgcc
      601 gtaccgaaaa agcctcagac acgcagtttg gcgatggcta cggaaatccc gttcgtccta
      661 ccggtttgat ttgttccatg ttccgtccgt cggatgatgc aactacatac gcgtatttaa
      721 ttccttcgaa tgcatttgca gttgtttctt tgcgtcattt agccgaaatg caaacagcta
      781 tcaaacaaaa tcaggctttt gctgcagaat gcacatcttt ggccaacgaa gtagatgccg
      841 ccatacaaaa atatgctatt gtgaaacacc cgaaatatgg taaaatcctt gctttcgagg
      901 ttgatggata tggaaattat ctaatgatgg acgatgctaa tgtgccttcg ttattatcat
      961 taccttatct tggatatatg tccacaaagg ataaaatcta ccaaaacacc cgtaaatttg
     1021 tgttgagtgt agacaatccg tatttctaca aaggaactgc aggagaagga attggaggcc
     1081 cacacgttgg tccggatatg atttggccta tggctatcat tatgaaagct ttgacttcga
     1141 atgatgaaaa ggaaattgcc gactgccttc gtatgttgaa aaacacgcac ggaggaaccg
     1201 gatttatgca cgaaactttc aataaagata atcctgctaa attctcccgt tcatggtttg
     1261 catgggcaaa tacacttttt ggggaattgc ttattaaagt ggaaaaagag catccggctt
     1321 tactccagaa gacttattaa gattaattct caagatttaa ttgtgtggtt ttagagttgt
     1381 aatattctct aaaaccatgc aattcccctg ttattatcca cctgaataat caatacaatc
     1441 acacaaatga aaaaaacagt agcattgctt ggagttatcc tggctttttc aattagcgcc
     1501 ctggctcaag tcacgcccga agtaagaaat cttcgtactg agtatctcca aaatcctgtt
     1561 ggaattgatg taaaaacacc aagattcagt tgggaaatcc tttccagtga acggggagcc
     1621 aaacaaacag cttatgaaat cacagtatct actgataaaa caggaagtga ccctatctgg
     1681 agttccggaa aagtagagtc tgacaaatcg gtaaataacg tatacaaagg agctgccctt
     1741 gctccttcta cccgttatta ctggcacgtg gatgtttgga ataataacag cacaaaaata
     1801 tcatctaccg aagcctcatt tttcgaaacc ggattattgg attccggttg gggagatgca
     1861 aaatggataa aagctacgac cctgaaacag ggcgaaaccg cagccgcagc cattacaaac
     1921 tataccatca gtatggattt tcagctcaat gatatagctg ccggaccatg ctttggagca
     1981 aaagatgcca ataatttctt catgtggcaa atcaatatcg aaaccggcag agttcgtttt
     2041 cgtcctcact catggttaaa tggaaatgca gtatgtcatg aaaataaaga tattacttca
     2101 tttattaaca tgcaaaaagg cgtaacctat acacttaaaa tagaagtaag gggagataaa
     2161 gcatccacat atattaacgg tatattgatt gatgctgaca gggtaaatcc aagaggtgga
     2221 aactacggat acggcaacct tggttttcgt tcagcacaag ctgaaacaag caccaccatt
     2281 gaatcggctt cattcgacaa cataaaagtt accaccactg aacagagtat agaaaaaaca
     2341 ctgtttgatg agcaattttc aaacgctaca agttttgcat ttactgcagg aactgtgaca
     2401 aatggacgtt tactggtcaa tatgggaaat actatttcat ggcaaaaagt cggcaatgcc
     2461 cggtttacgc tggaaacaga tatgactatt ttaaatcaga atgccggtat tatattcggg
     2521 gctacagata taaacaacat gtatatgtgg tcgataaaca ccaaagacca gacttatcca
     2581 ctaattcgac gccatattta cactggaaat aatccggttg ccagcgatgt ttccatagca
     2641 gcttattatt caaaagcaga cctgataggg aaagaacgac acgttaaaat agacattgaa
     2701 aataacgtaa ttaaaaccta tatcgatggc gttctggtgg atacatacac tgacacgagc
     2761 ggtgcactta aaaacggaca cgttggtttc cgggcttata acggagacaa tagtacagat
     2821 gaagttacca tgtacgacaa catagttctg acaaattaca ttgcaaacgc ttctacggga
     2881 gttattgaac ctgtgattgc attttccgag aattttgaaa acggctcaaa tgcattcgaa
     2941 ggatcagaaa ccgtggacgt ttccggaaat acaaaattga aaatgtatgc aaaaagtgct
     3001 gatttacgtg ttcttcaggg agtttctacc ggtattccaa tgttcaggac taaatttatg
     3061 ttggacaaac agataaaatc ggctaaaatc tacagttctg cactcggagt ttatgactta
     3121 tttataaacg gaaaaagagt gggtacttca actgatgatg gaaaagttat ttatgatgaa
     3181 ttaaaaccgg gatggacaga ttataacaaa accgttcagt actccaccta tgatgttacc
     3241 agtttactta cgtcaggagc aaatgcaatc ggtgcacatg ttgctcccgg ttggtggaaa
     3301 ggtggaattg ctcatggcca atatggcgac aaggagatca gttttattgc aaaacttctt
     3361 attcaattca gcgacggaac aacacaaaca attgttacag atccatcgtg gttaaccaat
     3421 acaaccggtc ctatccgaat gggagatata tacaacggcg aaacctacga tgcgcgtaaa
     3481 gaaagtgatt ggaaaaatgc tgattacgac gattcggcat ggctccaaac tggtgttttc
     3541 agtggattta ttggcaaact gaaagcaact gttggaccaa cagtccggct tcgtccggaa
     3601 cttaatatta ctccggtaag tattaatgtt tatgaaggta ataaagccaa tggtcaaacc
     3661 tacggagcaa ttaatacgat tacgactatc aatggaaatg gcgttgtaca actcaagaaa
     3721 ggacaaacag ccatttatga tcttggtcaa aatatggccg gttgggtaaa aattaaagca
     3781 aaatcagcag ctggtacaac tttgaaaatt cgctttggcg aaattctaaa cgataatggc
     3841 gctttatcac gtggaaatga tggacctgca ggaagtttgt acacagccaa tctgcgaaca
     3901 gcaaaagcaa ccttaaccta tattttcaaa ggaaatgaag acgctgaaac gtacaaccca
     3961 agcctgacat tctttggttt cagatattgc gaactgactg caagccagga tgctgaaata
     4021 cagtctctaa ctgccgaagt agttggttct gcaaccgaag aaggttctac atttaaaaca
     4081 agcagtgctc ttgtaaataa gttatacaat aacgtaatct ggggacaaag aagtaacttt
     4141 ttgagcgtac ctaccgactg cccacagcgc gatgaacgtc agggttggac aggcgataca
     4201 caaattttct cgaaagctgc agcctacaat gccgatgtcg cttcattctt tcataaatgg
     4261 atgggcgata tgcgcgacag tcaacgtagt gatggcgcat ttccgagtac agctccggtt
     4321 atttggggag gttttggcca gggagcatgg gccgaagccg gaattattgt tccatggaat
     4381 gtgtatttga tgtatgacga tgccggaatc atagaagaaa attttgcatc aatggaaaaa
     4441 tacatgcaat ttctggttgc ccaggctggc ggaggttata catacaatgg tgccggagtt
     4501 gactttggcg attgggtggc ttacgaggcc atggataacc gttatgtcag tgtttgttat
     4561 tatgcctatg ctgctcagct aatgtctaaa atggcaaaag tactcagtaa agcaaccggt
     4621 gatatttacg actttaaaag taccagttat gccagtttat acaataaaat taaagctgaa
     4681 tttcagacaa gatatgtaaa tgctgatgga actttgaaac aggtttctca aacagcttat
     4741 ttgcttgcat taaaacttgg attgttccct gatgatgtaa ctaagaacaa cggaatcact
     4801 taccttactc agaaaattgc caataatgga aataaactga gtaccggatt tattggaaca
     4861 ggcattttaa atcaaacatt aagtcagttt ggagctacaa acacagctta taatcttctt
     4921 ttacagcgag gcaatccatc atggttatac agtattgacc agggagcaac taccatttgg
     4981 gaacgctggg attcatatac aatcgaaaaa ggttttcaga ccgtggttat gaattcattc
     5041 aatcattatt catacggtgc agtttccgaa tggatgtatc gctttgtggg cggaattgaa
     5101 gcagacgaag caacaccagg cttcaagcat tttattcttc aaccaaatcc ggataaaaga
     5161 acaactttgc ctcagggtca ggagcgtatc acttctgccg aagctaaata cgactcctat
     5221 tatggcgata ttaaaagtgc ctgggctgtt cggacagatg gaaacctgac ttacacggca
     5281 acagttccgg ctaatacaac tgctacactt tatttacctt taggggatgt ttccgacgta
     5341 gtttatgaag gagctgtgtt agccgaaaat gccgagggtg tgacttttgt aaaaaaagaa
     5401 aatggaaaag cagtttacga actcaaatcc ggaacctatt cttttggtct gaatgttccg
     5461 gctataacag ctaccaaacc ggttattgaa aaaaaaaact tcattttttt tccaaacccc
     5521 gttcactata agctcacgat agggtcagaa ccagtaaatt atattatttc ggacttagcc
     5581 gggaaccaaa taaaaagtgg aattggagca agtgtgatag ttactgattt atgtgccggc
     5641 atttatttgc tgaaaacaga aaataaaacc tgtaagttta taaaaaaata aaatacaaaa
     5701 cagttgaact actggtattt gaacaataat ggattatatg tgaaaatctt ataaaccaat
     5761 cattaataga aaattgtata tttgtaaaac gaggttcatt tacccaactg cttaaataaa
     5821 aaataattaa atactaatat cccctcattt actaaaaatg aaacaactat ttattgtaac
     5881 agcttttgtt ctttgcaatt tgtttgcaag cgcacagcaa acgaacgcaa cttatgtcga
     5941 ttttgtaaat ccgcttatcg gctcacaatc gaaccattcg ctatccaatg gcaacacata
     6001 tcccgccatt gcccggccgt ggggaatgaa tttttgggtt ccgcaaacca gcactatggg
     6061 cgacggttgg gtttataact atacggatac tcacattcgg ggattcaaac aaactcacca
     6121 gccaagtccg tggattaatg actatggcca attttcattg atgccaacaa tggggctgaa
     6181 gattgatgaa aacaaacgcg caagttggtt ttcgcataaa gcagaaattg taaagcccta
     6241 ttattatagc gtttaccttg ctgattacga catcacaact gaaataacgc caacagacag
     6301 ggctgcttat tttcgcttta ctttctcaga atccgattcg tcaacagtgg tcattgatgc
     6361 tttcgaccgt ggttcgtaca tcaaaatcat actcgaagag aataaaataa tcggttatac
     6421 aacccgcaac agtggaggag ttcctgagaa tttcaagaat tattttgttg ttcaattcga
     6481 caaaaaggta aaattcagct ctatatggaa aaatggagct ttatgtgacg gaaatgaact
     6541 agccgaaaat cacgtaggcg ctgttgttgg atttaaaacc cgacgtggag aaattgtaca
     6601 ggccaaagtc gcgtcatcat ttatcagctt cgaacaagcc gaacgcaacc tgaatgaact
     6661 ttcgggcaaa acatttgacc aggtaaaagc ggatggccga agcaaatgga atgaaacttt
     6721 gggcgtcgtg gacatcaaag caaacgtaga ccaaatgcgt actttttact cttgcctgta
     6781 tcgttcaacg ttgtttccac gcatgtttta cgaatttgat gcagcaggaa aacctgttca
     6841 ttacagtcct tacaacggta aagtgttgcc gggatatatg tttaccgaca atggtttttg
     6901 ggatacattc cgggcgcaat ttccacttat caaccttttt tatccttcaa tgaatgcgaa
     6961 aatacaggaa ggattactca atacgttcaa agaaagcggc tttttgccgg aatgggcttc
     7021 accaggccat cgcgattgta tggtgggcaa taactcagca tcaattgttt ctgatgctat
     7081 tctaaaaggt attacaccca aagaaatgca acttccgcta tacgaagcca tgaaaacttc
     7141 ggccaacagc aatcatccac aaatcagatc gaccgggcga cgtggtgttg agtattacaa
     7201 caaactgggc tatgtgcctt acaatgtagg catcaacgag agtaccgccc gcacattgga
     7261 atatgcatac gacgattggt gtatttatca ggttggttta ttcctgaatc gtccgaaaga
     7321 agaaattgaa gtttataaaa atagaagccg caatttccag catatgtttg atccgagcca
     7381 caatttaatg cgtggtaaaa atgctgatgg tacattccag tcaccgttta acccgcttaa
     7441 atggggcgat gcattcaccg aaggaaacag ttggcattat acctggtcgg tttttcacga
     7501 cataaacaaa ctgaaaagcc ttatgggtgg agaaaaagca tttgcaggaa tgctggattc
     7561 ggtatttgcg ttgcctcctg ttttcgacga cagttattat ggtggcacca ttcacgaaat
     7621 tcgtgaaatg cagataatga acatggggaa ttatgcacat ggcaaccagc ctatccagca
     7681 catgatttat cttttcgatt atgcacgcca accctggaaa acacaatatt gggcgcgtga
     7741 agtgatggat aaactgtatc tcccaacgcc ggatggatat tgcggtgatg aggataatgg
     7801 acagacttcg gcctggtata ttttttccag tttaggattt tatcctgttt gtccgggaac
     7861 cgatcagtat atagtaggtt cgccaatggt acagaaagca acaatttcgt tagaaaatgg
     7921 caaaaaaatc acaattgacg ctgccggaaa taataaagat tcccgttata tccaatcgct
     7981 ggttgtgaac aagaaaccat atacccgtaa ttacctcaat tattctgaat tacaaaaagg
     8041 tgcaacgcta ttgttcaata tgggtagcaa accgaataag aacagagcta ttaccgttaa
     8101 tgatttacca tattcttaca ctgctgttga agctgacaaa taagataaaa acgtgctaag
     8161 gcttacaact gagtaaactg agtttctctt tttactcagt tgtaattttt taaaatgcct
     8221 acagggtaca aataatggca gaatcagtca tgaataataa cggataaata cctttttctc
     8281 caacctattc attatctttg gctttatttc agcaaagtgt cagcccaaca ccgacctggt
     8341 caataattga tgttttttga acagatttga ttaagagtgg caattactaa tcaatatatt
     8401 tgcagtgact ttttatacta ttgtaacctt taatcttttc agggaaatta ttctcattga
     8461 ataaattata aacggctgat gaaaaaggct ttactggcac tcttaatcat aatctgcgtt
     8521 ttcaatgcaa ctgcttcacg ttctttgccg ttcgttaagt accaggttga aaatggcttg
     8581 tcgcacaaca cagtgtggtg tgtactgcag gacagttatg attttatgtg gtttggcaca
     8641 agcgatggat taaactgctt tgacggaaaa aacttcagga ttttcagaag caattcgcag
     8701 gaaaaaagct cacttggaaa taattttata caatccctgt tcgaggatga gaaacacaat
     8761 ctttggattg gcaccaaccg tggtttatac cacttcgaac gtaaaactga aactttcacc
     8821 tactttgacc tgaaaacgga agacggtgta ctcatcagta gtaacgtcag caaaattata
     8881 aaaacaagca ccgggactat gtggtttgcc acgctcggcc agggcgtttt catttacaac
     8941 ccccaaacaa aaacactggt tcaaaacagt acctacagct cgtttgtagt aagtctgctt
     9001 cagactccaa acgggaatat ttttgccaca tcacgcctga atggattgat ttgctttgat
     9061 aaaaatggta aatatctccg ttcttatgtg ccaaacgaaa gcaaaagtgg ccttaatgac
     9121 attgaaataa gcacattatg ctaccaaaat aatgcattgt ggttcaacgt gggaacattt
     9181 ggatttttca aactggattt caaaaccggc aaaatgaaag cgattgcgag cgaaaacaat
     9241 ttgccggtag tatccaatat ccgcaaaatt tttgcttatt cagccaatca actctgggtc
     9301 ggtggcgata acggcttata tctttttgat attcaaaatg aacgtttcag ccggctcgac
     9361 gatccttcga atccgaaaag tttgaatgac cagtcggtgt acgacattgc ccgcgaccgt
     9421 gaaggtggaa tgtgggtctc gacttacttt ggaggtgtaa attatttgtc tacaaatctg
     9481 aagcctttcg agcactatta ctctcaattt cagacaggtt ctatttccgg caaagcaatc
     9541 agccagttct gcgaagatgc tgccggcaat atctggatag ccactgaaga tggtggtttg
     9601 aactacctga ataccaaaac acaaacggcg caaatttata aacctgccgg tgcaaaaaac
     9661 agtatcagct accataacgt tcactccctt ttgctggata acgacaaact ctggattgga
     9721 actttctcac ggggaattga tatacttgac ctaaaaacca agaaattcca caactaccaa
     9781 catcggcgcg acgatgcaaa aagcgtatgt gacaatgcca tttataccct gttcaaagac
     9841 agtcagggca acattctcgt tggaacggca tggggcttga gcaaatacga ccgtgcttcc
     9901 gactcattct caatggtgga cgaaatcggg ccaatggttc atgttttcaa tatgattgaa
     9961 gattcgcgta acaatctctg gattgcaaca tacaacgccg gcgtattccg tcataacctg
    10021 aaaacaaaca aatggagcca ttatacacat gttgctaacg atcctcaaag cgttacggcc
    10081 aacagtgtca tttcagtttt tgaagataaa aaccataccg tgtggtttgg aactgaagga
    10141 ggcggactat gttctttcaa caataaaaca gaaaaattca ctgcttttga ccctgaaaac
    10201 aaattgctgc ccaaccccgt gatttattcc atacagcaag atgaattcga caatttttgg
    10261 atagcatcca atgcagggct ggtacgaata aatccataca ccaagaaaaa ccgcctcgtt
    10321 ttcaccaaag ccgatggact tcagagtaac cagtttaact tccgttcatc gctacgtgca
    10381 cacgacggga aaatgtattt tggcggtatt aacggattca atgcattcta ccctaaatat
    10441 tttactcaaa acaaatacat tccaaaagtg cggattgttg acttcaaatt gttcaacaaa
    10501 cgggtaaatg tcaacgatga aggatcgccc ctcaccgctc ccatttatga tttagaaaaa
    10561 cttacgctaa gatacaatca aaacacgttc agtttcactt ttgctgcatt gagctttcag
    10621 gcaccggaaa aaaaccagta cacatacatg ctcgatggtg tggataaaac ctggaatgtg
    10681 acagataatg gtaacaatac tgtttcgtat accaacctgc ctcc
//
LOCUS       DATDNM010000681         2302 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1363703, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000681 DATDNM010000000
VERSION     DATDNM010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1363703"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..993)
                     /locus_tag="VI413_11525"
     CDS             complement(154..993)
                     /locus_tag="VI413_11525"
                     /inference="COORDINATES: protein motif:HMM:NF013867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008983 - protein-glutamate
                     O-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HEY6915298.1"
                     /translation="MKNSKKFISEMLQQNHGIDVLKYERAFFEKNIEKRISETQCDTK
                     DAYCSLLRQNPVELEKLIECFTVSYSEFFRNPLTFSVLEKIVLPSLVMNKRMLKSKGI
                     RIWSSACAAGQETYSVAMLLHESLPNANEAINYRIFATDFSYEQILLAQTGEYAEAAL
                     NNINLCRLNQWFEKQGNVYAISEVLKQNIDFSVFDLFDPNFSCPPASIFGNFDIVFCA
                     NLLFYYSAEFRASIIEKVNNSLADNGLLITSETEREMLIQSGFKEVYPQSAIFMKNYQ
                     LHH"
     gene            complement(990..>2302)
                     /locus_tag="VI413_11530"
     CDS             complement(990..>2302)
                     /locus_tag="VI413_11530"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY6915299.1"
                     /translation="ISGAKYASFNLVDDNGLDVTTVAFSGVDNIQEKAKSILGFELVN
                     RKWKYDPVHANKLKDKVITRFDSFFELVDSSLPKVVTTLIEKMFNIGEVWVIQIVKNK
                     KVVGNYTLLFTDRNTLKNREIVELYANQVGLFIERLKSERALRESEEVYRNLVMRIPD
                     GVYKSSTDGKFMDVNPAMIKMLGYESKEEIMNIDILSDLYFDVADRQTGILNNSNEAM
                     SVFQLRKKDGSGIWIEDHGWYNMDINGNVVSHEGVLRDITERKLAEEALRASEDKYRT
                     MIENSNDMIWAVDLEGKFTFSNEIAERVTGLKLENWIGKSFIAILSPQDVPKVMGIHA
                     RTISGENCSYELSIKRADGAMLTLSINTSPVYSQGKIEGAVNFARDITDRKMAELALE
                     EKMNELIRFHDLTVDRELTMIELKKEVNDLLKKTGNNEKYKIIQ"
BASE COUNT          689 a          508 c          340 g          765 t
ORIGIN      
        1 aagtataact atgaagatca acatggttac aaaaccaatc gtcaactgtg cacctacctt
       61 taaatttcta atattcatat aattacgtat tcaactaata aaaaaaaatg cttaagtatg
      121 tctgatttta aaatatattc ctgagataaa atactaatga tgcagttgat aatttttcat
      181 gaaaattgct gattgcggat acacttcctt aaaaccggac tgaatcaaca tttcccgctc
      241 cgtttcgctc gttatcaaca atccgttatc agccagacta ttattcactt tctcaataat
      301 gctggctctg aattccgcag aataataaaa aagtaaattc gcgcagaaaa cgatatcaaa
      361 attaccaaaa atactagccg gagggcatga aaaattgggg tcgaacaaat cgaaaaccga
      421 aaaatcaata ttttgcttta aaacctcgct aattgcatat acatttcctt gcttttcaaa
      481 ccattgattc agccgacaaa ggttgatatt attcaatgcc gcttctgcat attcccctgt
      541 ttgtgccaat agtatctgct cataactaaa atcagtagca aaaatccgat aatttattgc
      601 ctcatttgca ttcggcaaac tttcgtgcaa cagcatggcc acactatatg tttcttgccc
      661 cgcggcacag gccgacgacc agattcggat tcccttactt ttcagcatcc ttttattcat
      721 caccaatgat ggcaaaacaa ttttttcgag tactgaaaaa gtcagtggat tcctgaaaaa
      781 ttcgctatac gaaacggtga aacattcgat caatttttcc aactccacag gattctgcct
      841 taacaacgag caatatgcat ccttagtatc gcattgtgtt tcagaaatcc ttttctctat
      901 atttttttcg aaaaatgcac gttcatattt caacacatca atgccgtggt tttgctgaag
      961 catttcagat ataaactttt tagagttttt cattggataa ttttatattt ttcgttgttt
     1021 ccggtttttt ttagcagatc gtttacttct tttttcaatt ctatcatagt gagttcacga
     1081 tctacagtca gatcatgaaa acgtatcagt tcattcattt tttcctccag ggccagttcg
     1141 gccatttttc tgtcggtaat atcgcgtgca aaatttactg caccttcaat tttaccctgg
     1201 ctatagaccg gggaagtatt aatagacaat gtaagcattg caccatcagc tctcttaatg
     1261 ctaagttcgt aactgcaatt ttcacccgag atagttcgtg catgaatacc cataaccttg
     1321 ggcacatctt gaggagacaa aatcgcaata aacgattttc ctatccaatt ttctaattta
     1381 aggcctgtca ctctctctgc tatttcattt gaaaatgtga attttccttc aagatctact
     1441 gcccagatca tatcattcga attttcaatc atcgtacggt acttgtcctc actcgctctc
     1501 aaggcttctt cggccagttt acgttcggtt atatcccgca aaacaccttc gtgagaaacc
     1561 acatttccat tgatgtccat attataccaa ccatgatctt ctatccagat acctgaaccg
     1621 tctttttttc gcagctgaaa aactgacatt gcttcattcg aattatttaa tatcccggtt
     1681 tgacggtcag ccacatcaaa ataaagatcc gaaagtatat ctatattcat tatctcttct
     1741 ttactttcgt agcccaacat tttaatcatg gccgggttta catccatgaa tttgccatct
     1801 gtactgcttt tgtaaactcc atcgggaatt ctcatcacca gattacgata aacttcctca
     1861 ctctctctga gcgctctctc tgattttaac cgttcaataa acaatccaac ctgattggca
     1921 tacagttcta caatctcccg gtttttaagg gtattacgat ctgtaaaaag caatgtataa
     1981 ttacctacaa ccttcttgtt tttaactatt tgaataaccc atacttcacc tatgttgaac
     2041 attttttcga ttagcgtggt aaccaccttg ggaagtgacg aatcgacgag ttcaaaaaag
     2101 gaatcaaatc gtgttataac tttatctttc agcttgtttg catgaaccgg atcatatttc
     2161 cattttctat tgaccaattc aaatccaagt atggattttg ccttctcctg aatattatca
     2221 acgcctgaga aagcaacagt tgtaacatct agaccattgt catcaacaag attaaatgag
     2281 gcatattttg caccggaaat ct
//
LOCUS       DATDNM010000682         4100 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_936755, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000682 DATDNM010000000
VERSION     DATDNM010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4100
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_936755"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..188)
                     /locus_tag="VI413_11535"
     CDS             complement(<1..188)
                     /locus_tag="VI413_11535"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6915300.1"
                     /translation="MSIAIVILNWNGEKYLQQFLPILIKNTAIPDVEIIVADNASTDL
                     SLGILKDKFPAVRTIVLD"
     gene            complement(291..623)
                     /locus_tag="VI413_11540"
     CDS             complement(291..623)
                     /locus_tag="VI413_11540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915301.1"
                     /translation="MKEQDDDLLVYDEDDAVKFILNFIPAEAKAGINDEKIEYVLDVV
                     YEFYDENGLIDEDSTEEASIDEEEMFKFILKCSKKDKMQLTEDEIRLILDGEYEYGKS
                     LGIYTNED"
     gene            844..1929
                     /locus_tag="VI413_11545"
     CDS             844..1929
                     /locus_tag="VI413_11545"
                     /inference="COORDINATES: protein motif:HMM:NF017984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HEY6915302.1"
                     /translation="MRYSDIPSLRLQSQYIIKSEFSLVKDLVGSMGAMQAQDLAMAKW
                     AVGLRLDQSTEETIENAYNNGEIIRTHLMRPTWHFVSPEDIYWLLELTSPRIIPTLKA
                     RNKQLELTEEIFSKCYRILEKELTNGNSLTREELARLFMFENIKTDENRFSHLMIKAE
                     LDGLVCSGPLKNKKLSYASLSERVPIKKLLSKDESLYELAKRYFVSHGPATLQDFVWW
                     SGLSVSDARKALEMNKSSLNSETIESETYWFGNSTTSAKSKPTVHLLPAFDELLISYR
                     DRKATISDPDNKKAISSNGIFRPIIIVDGKVCGIWRRLSKMNLVVVEANLFQSQNESI
                     IEGVENEANRFGLFINKPIQLILNNPV"
     gene            complement(1975..2049)
                     /locus_tag="VI413_11550"
     tRNA            complement(1975..2049)
                     /locus_tag="VI413_11550"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2012..2014),aa:Pro,seq:tgg)
     gene            2219..3346
                     /gene="hemW"
                     /locus_tag="VI413_11555"
     CDS             2219..3346
                     /gene="hemW"
                     /locus_tag="VI413_11555"
                     /inference="COORDINATES: protein motif:HMM:TIGR00539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HEY6915303.1"
                     /translation="MAGIYIHIPFCKKRCTYCDFYTEVAPKFIPSLVDAVKKELQIRK
                     DYLQNASINTIYFGGGTPSILKADEFNDIFNTIYELFSVDKDAEITFEANPDDLSVQY
                     LDSIKELPFNRISIGIQSFDDEDLKRINRRHTGVEAIEAVKNAQSAGFDNLSIDLIYG
                     LPLQTLEGWEKQLDIALSLNVQHISSYGLTYEEGTALWKQREKGKVTNVDDETMNAMY
                     LLLLDKVQQKGFEAYEVSNFALPDYRSRHNTSYWKQDPYLGIGPSAHSYDLHSRQWNV
                     ASIKEYIKAIENNTPFFEQEELTLNDRYNDYVMVSLRTANGIDLKILEQEFGPELTSY
                     CIENIKSFIDNGKAINEGGKLRLTSAGIMISNLILIELMKV"
     gene            3397..>4100
                     /locus_tag="VI413_11560"
     CDS             3397..>4100
                     /locus_tag="VI413_11560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic peptidoglycan transglycosylase"
                     /protein_id="HEY6915304.1"
                     /translation="MEKMIQKGDVRSKFRKIFWRLFAFGICCIILIFVFINIGWIGYL
                     PPIDELQNPKNKFATEIYSADQQLLGRYFFSKENRVGVHYNEISENVVNALVATEDVR
                     YYKHSGIDGIALTRAVILTGILRHKSSGGGSTITQQLAKQLYSPKADNFIERLLQKPI
                     EWVISVKLEKLYTKEEILAMYLNQLDFLNNAVGIKSAAQIYFSTSPAKLKIEEAATLV
                     GMCKNPSYFNPVRYNER"
BASE COUNT         1364 a          705 c          739 g         1292 t
ORIGIN      
        1 ttatccaata caattgttct gaccgcaggg aatttatcct ttaaaatacc caatgataaa
       61 tcggtggaag cattatcggc aacaataatt tcaacatccg gaattgcagt atttttaatt
      121 aaaataggca ggaattgttg taaatatttt tctccattcc agttaagaat gacgatagct
      181 atagacatta ttctaaatct gttagttgtt ttacaaaata aaagatgcaa aaaacaccaa
      241 gcaggcatcg ctttgcattg gtgttcttta tataaaacgg tggcaatagt ctaatcttcg
      301 ttggtataaa tacctaaaga ttttccatat tcatattcgc catccaaaat aaggcgaatt
      361 tcatcttctg tcaattgcat tttatctttt ttcgagcact tcagaataaa tttaaacatt
      421 tcttcttcgt caatgcttgc ttcttcagtc gaatcttcat caatcaaccc attttcgtca
      481 taaaattcat atacaacgtc taaaacatat tcaattttct catcattgat tccggcttta
      541 gcttcagcag gaataaaatt gagaataaat tttactgcat catcttcgtc gtataccaat
      601 aaatcgtcgt cttgctcttt cataatctat gagttttaat tttgtttttc aataataatc
      661 ctatttaagt tcaaagatag agtatttttc ttagacaccg tttttattgt attttttttt
      721 gaaataataa acatttagaa ttctattcga ctatcagata ttatcaattg tttgttttat
      781 tgcttcagct ttttttccaa tctttgcaaa atcatatcag ttattaaagt taaaaataga
      841 aacatgagat attcagatat tcccagcctt aggctccaaa gccaatatat tataaaatca
      901 gaattttcat tagtcaaaga cctggtcggc tcaatgggtg ccatgcaagc gcaggatttg
      961 gcgatggcca aatgggctgt tgggctaaga ctcgatcaat caacagaaga gacaatagaa
     1021 aacgcttata acaacgggga aattattcgc acacatttaa tgcgtccaac ctggcatttt
     1081 gtatctccgg aggacattta ttggctactc gagcttactt cacccagaat tataccaaca
     1141 ttgaaagctc gaaacaaaca acttgagtta accgaagaga ttttttcaaa atgctatcga
     1201 atcttagaaa aagaacttac aaatggaaat agtttgactc gcgaggagct ggctcgatta
     1261 tttatgtttg aaaatataaa aaccgatgag aatagattct cccacttaat gataaaggca
     1321 gaattagatg gattggtttg tagcggtcca ctaaaaaaca aaaagctgtc ttacgcttct
     1381 ctttctgaaa gagttccaat aaaaaaatta ctttcgaaag acgaatcatt atacgaattg
     1441 gcaaaaagat atttcgtgag ccatgggccg gctacgttgc aggattttgt atggtggtcg
     1501 ggattgtctg tttctgatgc acgaaaagcg ctggaaatga ataaatcatc attgaattct
     1561 gaaactattg aatctgaaac ttattggttt ggcaattcaa ctacttctgc taaaagtaaa
     1621 ccgacggttc atttattgcc tgcttttgat gaattgctta ttagttatcg cgacagaaaa
     1681 gccacaataa gcgacccgga caataaaaaa gccatttcaa gcaatggaat tttccgtcca
     1741 attattattg tagatggtaa ggtgtgtgga atttggaggc gtttaagcaa aatgaacctt
     1801 gtagttgtag aagcaaattt atttcaatct caaaacgaat cgataattga gggcgttgag
     1861 aatgaggcaa atcgttttgg tttgtttata aacaaaccaa ttcaactgat tttgaataat
     1921 ccggtttaaa caaaaaaaga cttaccgaat aaatcgataa gtcttttatt ttcgtcgggg
     1981 tagcgggatt cgaacccacg cccccctgct cccaaagcag gtgcgctaac cggactgcgc
     2041 tacaccccga aaataagctt gaattgattc gctacacaat gcatatgttg tttctcaatt
     2101 gcgagtgcaa agatactagc tttttcggat attacaaaca ttttgttgta tttttgtaag
     2161 aaaaaattgc gatttgtttt aattaaattt caaattgctg aaacacaaaa atttaaagat
     2221 ggctggcatt tatatacata ttccattttg caaaaaaaga tgcacttatt gtgactttta
     2281 tactgaggtt gcaccaaaat ttatcccttc attggttgat gcagtaaaaa aagagctgca
     2341 aattcgaaaa gactatctgc aaaatgcttc aattaatact atttattttg gtggtggaac
     2401 acccagtatt ttaaaagcag acgaatttaa cgatattttc aatacaattt atgagttatt
     2461 ttccgttgat aaagatgctg aaattacttt tgaagcgaat ccggatgatc tatcagtaca
     2521 ataccttgac tcaattaaag aattaccttt taatcggatc agcattggca ttcaatcttt
     2581 cgatgatgaa gatttgaaac gaatcaatcg tcgacacaca ggagtcgaag ccattgaagc
     2641 agttaagaat gctcaatcag cggggttcga taaccttagt attgatttaa tttatggatt
     2701 gcctcttcaa acgctcgaag ggtgggaaaa gcaacttgat atagcactaa gcttaaatgt
     2761 tcagcatatt tcgtcgtatg ggttgactta tgaagaagga actgctttgt ggaagcagcg
     2821 cgaaaaaggg aaagtgacta acgtggatga tgaaacaatg aatgccatgt atttgctttt
     2881 attggataaa gttcaacaaa aagggtttga ggcgtatgaa gtttcgaatt ttgcattgcc
     2941 agattatcgg tcgagacaca atacatcgta ctggaaacaa gatccctatc ttggcattgg
     3001 gccatcggca cactcttatg atttacattc gagacaatgg aatgtagcct ccattaaaga
     3061 atatataaaa gccattgaaa ataatactcc tttttttgaa caagaagaac ttaccctgaa
     3121 tgaccgatac aatgattatg taatggtttc gttacgcaca gccaatggca tagacctaaa
     3181 aattcttgaa caagaatttg gacctgaatt gaccagctat tgtatcgaaa acataaaatc
     3241 gtttattgat aatgggaaag caataaatga aggcggaaaa cttcgcctga catctgctgg
     3301 aataatgatt tccaacctca ttttaataga attaatgaaa gtctgaatta taaaaaaaag
     3361 tagtactttt gtgcccacat ttatgttaca caagttatgg aaaaaatgat tcaaaagggc
     3421 gatgtccgct caaaattcag aaagatattt tggcgattat ttgcatttgg tatttgctgc
     3481 attattttaa tatttgtatt tatcaacatt ggctggattg gctacctgcc tcctattgat
     3541 gaacttcaaa atcccaaaaa taaatttgcg acagagatct actctgctga ccagcaattg
     3601 cttggacgat attttttcag taaagaaaac cgcgtaggcg ttcattataa tgaaatatcc
     3661 gaaaatgtgg taaatgcact tgttgctact gaagatgtgc gttattacaa acattccgga
     3721 attgacggca ttgcattaac cagggccgtt attctgaccg gcatcctgcg tcataaaagc
     3781 tccggtggtg gaagtaccat cacgcagcaa ttagccaagc aattatattc tcccaaagca
     3841 gataatttta ttgaacggtt actgcaaaaa cctattgaat gggtaatttc tgttaaactg
     3901 gagaaattat acacgaaaga ggagattctg gctatgtacc tcaatcagct agactttcta
     3961 aataatgctg taggtatcaa atctgcagcg caaatatatt tcagtacatc tcctgccaaa
     4021 ttaaaaatag aggaagcagc tacgttggtt ggaatgtgta agaatccatc ttattttaat
     4081 cctgtaagat ataatgaacg
//
LOCUS       DATDNM010000683         2942 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_189917, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000683 DATDNM010000000
VERSION     DATDNM010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189917"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1417)
                     /locus_tag="VI413_11565"
     CDS             complement(<1..1417)
                     /locus_tag="VI413_11565"
                     /inference="COORDINATES: protein motif:HMM:NF039501.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5686 family protein"
                     /protein_id="HEY6915305.1"
                     /translation="MNIKTAFLGIFLALIPFFGFSETNSNEILRVVVLDAQNNEPIPY
                     ASIFLPDNGYKTRADAKGMFSINVSNLTLASNKAKISCVGFKPEFVSLSKADKEITVK
                     LNSLVQDLQEVKVKKQRYQRKNNPAVDLIEKVIANKKNNKKESLDYYENEEYEKIQFA
                     INHVTPDFQKKRLFKHFQFVFENIDSLKNNGDKILPVYLKENISDVYYQRSPKKLKEV
                     VKAHKAVSFAGFDNKGIEDNIKYLYQDIDIYENNISLISNQFLSPIAGTAPAFYRYYI
                     LDTIQSGADKVAKMYFGAKNKEDLLFQGYLYVLLDGSYAIQKVELTTSKGININWISD
                     IKIVQEFKKAENKSWMLASDQISMNFGLSKKGRGIFGQKIVSYSNYQLKQSLKGDSIL
                     NGKRGQVHEITGRQSDEYLATHRHEQLSRSEAGTYIAMDSIQKVPVFKRVMDVATLFL
                     FGYKDLGLVEIGPISTFYMYNP"
     gene            complement(1461..1910)
                     /locus_tag="VI413_11570"
     CDS             complement(1461..1910)
                     /locus_tag="VI413_11570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009433072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEY6915306.1"
                     /translation="MSAISEKKNILVTSSIFARLIVFAKAQVSAFVGGVTDYAIMVFF
                     TEVFHVHYTVSIVIGGVIGAVVNFSLNNKWTFHSENAPYKNSTRKQLLRFVFVVVNSI
                     LLKSSGTYAITTFLGIDYKISRLITDLFVSIGFNYTLQRYWVFKKAK"
     gene            complement(1867..2568)
                     /locus_tag="VI413_11575"
     CDS             complement(1867..2568)
                     /locus_tag="VI413_11575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005469382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEY6915307.1"
                     /translation="MKQTENLSNSEIVKIISANRERTNILRKSEQATIAFLVKRIPSW
                     VSSNMLTGIGFFGNIITFLSFVLAAYLSPYYLILGTVGYAINWFGDSLDGRIAYYRQK
                     SRKWYGFALDMTIDWLGIMLMGFGFVVYADGPWEIVGFAFVLMYGWEMITTLLRYKIT
                     GKYSIDSGLFGPTEVRIVISMILILEVVFKGSILYVSSIATAILFVMNIVDTQKLLKL
                     ADECDIREKEHTGNK"
BASE COUNT          939 a          573 c          497 g          933 t
ORIGIN      
        1 tcggattata catataaaat gtgctgatag ggccaatttc aaccaatccc aaatctttat
       61 atccgaataa aaacagggtt gcaacgtcca tgacacgctt aaacacagga actttctgta
      121 tgctatccat ggctatataa gtacctgctt ccgacctgct gagttgctca tgccggtgag
      181 ttgccaggta ttcatcactc tgcctgccgg taatttcgtg aacctgcccc ctcttgccgt
      241 taagaatact atcgccctta agagactgct tcagttggta gttggagtac gaaactattt
      301 tctgcccgaa aatgccccgc ccttttttgc tcagtccaaa gttcatagat atttggtccg
      361 aggccagcat ccagctctta ttttcggcct ttttaaattc ctggacaatt ttgatatccg
      421 atatccaatt gatattaata cccttacttg ttgtcagttc aactttttga atggcatagc
      481 ttccgtcgag cagaacatat aaatatccct gaaaaagcaa atcctccttg tttttggcac
      541 caaaatacat tttagccact ttgtcggcac ccgattgaat agtatccaaa atataatagc
      601 ggtaaaaagc cggggccgtt ccggcaatcg gacttaaaaa ctgattggat atcagggata
      661 tattgttttc ataaatatca atatcctgat acaggtattt gatattatct tcaatgcctt
      721 tattgtcgaa tccggcaaat gatacagcct tatgcgcctt tacaacctct ttcagtttct
      781 tgggtgaccg ttgataataa acatctgaaa tgttctcttt taaatataca ggcaggatct
      841 tatccccgtt atttttcaga gaatcgatgt tttcgaatac gaactgaaaa tgtttgaaca
      901 atctcttttt ctgaaaatcg ggtgtaacgt ggttaatcgc aaactgaatt ttttcatatt
      961 cctcgttttc ataatagtcc aacgactctt ttttgttatt ttttttgttg gcaattactt
     1021 tttcaattaa atctactgcc ggattgtttt tccgttgata ccgttgcttc tttaccttaa
     1081 cttcctgtaa atcctgcacc agtgaattta attttaccgt aatttcttta tccgctttcg
     1141 acaatgaaac aaattccggt ttaaatccga cgcaagatat ttttgcctta tttgaagcca
     1201 gcgttaagtt gctaacattt atactaaaca tacctttggc atcggccctg gttttgtagc
     1261 cgttatcggg tagaaaaatg gatgcgtacg gtatcggttc gttgttttgg gcgtcgagca
     1321 ccactactct cagaatttcg tttgagtttg tttccgaaaa gccaaagaaa ggaataagag
     1381 ctagaaaaat gccaaggaag gctgttttta tattcatttt gaaagtaatc cgataaatat
     1441 aatctaatca atgagaacgt ttattttgcc tttttgaaga cccaatagcg ttgtagtgtg
     1501 taattaaatc cgatggagac aaaaagatcg gtaattaacc gactaatttt ataatctatc
     1561 cccaaaaatg tggttatggc ataagtccct gatgatttca ggagaatact gtttacaaca
     1621 acaaacacga atctcaacaa ctgcttacgt gttgagtttt tgtagggtgc attttcggaa
     1681 tggaaagtcc atttattgtt caggctgaaa ttgactacag cgcctattac acctccgatg
     1741 acaatggaaa ctgtataatg cacatggaaa acttcggtaa aaaaaaccat aatggcataa
     1801 tcagtcactc cacctacaaa tgctgaaacc tgagcttttg caaatacaat aagcctggca
     1861 aaaatactac ttgttaccag tatgttcttt ttctctgata tcgcactcat ctgccagttt
     1921 taatagtttt tgtgtgtcaa caatattcat tacaaacaaa atagctgttg ctattgaaga
     1981 aacatataga atggaacctt tgaaaacgac ttctaaaatc aaaatcatgg aaattacgat
     2041 tctgacttcc gttggtccga aaagacccga atcaatggag tatttacctg taattttata
     2101 gcggagcaag gtggtaatca tttcccagcc atacataaga acaaaagcga agccgactat
     2161 ctcccatggg ccatctgcat acaccacgaa accgaatccc attaacataa ttcccagcca
     2221 atcaatcgtc atatccaatg caaatccata ccattttctt gatttttgcc tgtagtaagc
     2281 aattctgcca tcgagcgagt ctccaaacca gttaatagca taaccgactg taccaagaat
     2341 gagataatag gggctcaaat aagcggctaa cacaaaactg agaaaagtga ttatattacc
     2401 aaaaaaacca atgcctgtga gcatattaga actaacccat gatggtatac gtttgaccaa
     2461 aaaagcaatg gtagcttgtt ctgattttct taatatgtta gtacgctctc tattggccga
     2521 aattatcttc acaatttcag aattggacag attctctgtt tgtttcatac atttagtttt
     2581 attgtatttt ttgcaaaatt attgcgaaat attttagcgt tagtaaaggc aattactcaa
     2641 acggcaatat tgggttctga aatgacatat taaagagtcc aaaaatgatt tttctaaaaa
     2701 agagttcatt aaattctacc tgtttttgat ttttttgatt caatttcacc tacaaatctt
     2761 gaagtgtaga acaaaaaaac aaacgaataa cacatataaa cacttaaaaa acaaagcgat
     2821 attaattcac attgataaat agtactggat aaatgcgggg aaatgagagt acaaaagtaa
     2881 taataaaagc caaataataa agcacttata cccataatga atagagaaat attatgaaaa
     2941 ta
//
LOCUS       DATDNM010000684         3972 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_937108, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000684 DATDNM010000000
VERSION     DATDNM010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3972
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_937108"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            235..534
                     /locus_tag="VI413_11580"
     CDS             235..534
                     /locus_tag="VI413_11580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915308.1"
                     /translation="MRGGRVLPAAGLAHFFARTLWVAEARAGSNERMECIGANERKGC
                     MCAVVKRCGVKRNTAATTWICRVGKDKYPESEMSGMERNERMNDSSCVGLALRCE"
     gene            complement(1004..1675)
                     /locus_tag="VI413_11585"
     CDS             complement(1004..1675)
                     /locus_tag="VI413_11585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915309.1"
                     /translation="MGIIEIAKIIEYNASKVIENITSEMIEPYIYIQTEYKKSDVSAN
                     KTFQNIFCKYYQINIDEAGQEYINNYFQCLEKYKNPDKIDVEQICVALSYTKDSNGKY
                     QPINYKNVSCFLNLLNNQFTVWHEEFLKMFGIPQPYFLDTGKEIRYFQLSLIKIYKEF
                     DEIMRLNLLPTALRLFDEKYPDAGISIEKKLEFLFLAFDRINFLDVLFPEEDKILDED
                     SISLN"
     gene            complement(1704..2459)
                     /locus_tag="VI413_11590"
     CDS             complement(1704..2459)
                     /locus_tag="VI413_11590"
                     /inference="COORDINATES: protein motif:HMM:NF014626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0018142 - protein-DNA covalent
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HEY6915310.1"
                     /translation="MCFTVAIVREGVLLTAEQYYNSLPAKIRKKKKNPMEPEIPNLFM
                     VSGFAHPKLPVITENEFTLKEWGLIPSWVKSKEDALELRDKTLNAKGETIYEKPSFAQ
                     NIISRRCLLPFTGFFEWRDFNNNKYPYFIEPTTDPGFLLGSVFDTWVDKTSGEVYDTF
                     SIVTTPANPLMEMIHNSKKRMPLILDLEAADKWINPLSTTEEIKSILLPFDERNMKAN
                     TISKVASNSKIDRNYPEILQKVDYPELNQQSLF"
     gene            2614..3072
                     /gene="umuD"
                     /locus_tag="VI413_11595"
     CDS             2614..3072
                     /gene="umuD"
                     /locus_tag="VI413_11595"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HEY6915311.1"
                     /translation="MQHIRKIANSTNLDFYTANTSSHMELPFIDGGIAAGFPSPAQDY
                     IDLKIDLNTELISNPSSTFYARVKGTSMQDAGIMDGDILVIDRSLEPHDGATAVCFID
                     GEFTLKFIKIEKDAIYLVPANPKFQPIKVTEDNDFCIWGIVTYSIKSHIR"
     gene            3226..>3972
                     /locus_tag="VI413_11600"
     CDS             3226..>3972
                     /locus_tag="VI413_11600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011202620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HEY6915312.1"
                     /translation="MFGLIDCNNFYASCERVFQPSLNGKAIVVLSNNDGCVIARSAEA
                     KALGIPMGEPAFKLKELIERNQVTVFSSNYVLYGDMSQRVMTTISEFVPEMEIYSIDE
                     AFLYLNGFENNNLNDMGSKLIRTVKRNTGIPVSLGIAPTKTLAKVANKFAKKYKGYNG
                     VCIIDTDEKREKALKLTKIGDVWGIGRQFTKKLEYYSINTAWDFTQRTKSWVRQNMGV
                     VGERMWLELRGTPCIITESPKAKKTICTSRS"
BASE COUNT         1253 a          650 c          872 g         1197 t
ORIGIN      
        1 ctatccaacc cctgcattta tgttttcaat atttcaactg catttatatt aggggtgggt
       61 ggtcgggggt tggcgtggga gaagcaggtt taaaccgaat agaaaaaaca gccttgagcg
      121 tgcgtggata gcaaggctac atgcgagaga agtgaaacgg aatgaagtat gaagcctgtg
      181 cgttgtgtgc gagcctatgc gagttgagcg agtgccccgg acacagaaag cgcgttgcgc
      241 ggtggacggg tgctgccggc agctggtttg gcgcattttt ttgcccgaac gttgtgggtg
      301 gcggaagcaa gggctggaag taatgagcga atggagtgta ttggagcgaa tgaacgaaaa
      361 gggtgtatgt gtgcggtggt gaagcggtgt ggagtgaaac ggaacacggc tgcaaccaca
      421 tggatttgca gggtgggaaa agacaaatac cctgaaagtg aaatgagtgg aatggaacgc
      481 aatgagcgaa tgaatgacag ctcttgcgtg gggttggcgt tgcggtgtga gtgaaggagt
      541 gtagagaata aaatgaacga aaagactgaa agaacacggc aataagccaa cagggaaagt
      601 gagctgcaaa aaatgtgaca aaccataaca gcacgagcga tcgcaggcga gcaaaactct
      661 aagtggcggc tgccccctac taacaataag acggcacatg tgccgtctct actatggggt
      721 tttagggggc aggagtagcc acgactgagg aatgacagaa cgtgtgcagc aaaacaagct
      781 aacacgccat gacgagcacc taccggagcg caggaatgag tgtggaagcg gtagccacaa
      841 gggcagccga aaaaatacta gctgaagcgt agcgaggtct ggagattttt ttcaggctgc
      901 ttgttttacc cttggggcta tgtttttgcg aacaaagtgg cggaatgacg aagaccgctt
      961 tacctattcg gtttaaatct gccgtgggct ggtctttccc ttttcaattt aaagagatag
     1021 aatcttcatc gaggatttta tcttcttcag ggaaaaggac gtcgagaaaa ttgattctat
     1081 caaatgccaa aaataggaac tctagttttt tctcaattga tattcccgca tcagggtatt
     1141 tttcatcaaa caaccgtaga gcggtaggta ataaattcaa tctcattatt tcatcaaact
     1201 ctttataaat cttaattaaa gaaagttgaa aatatcgaat ttcctttcca gtgtctaaaa
     1261 aatatggctg gggaatacca aacattttca aaaactcctc atgccatact gtaaactgat
     1321 tattcagtaa gttgagaaag caagaaacat ttttatagtt gattggctga tatttaccgt
     1381 tagaatcttt ggtataggat aaagcgacac aaatttgctc tacatcaatt ttatcaggat
     1441 ttttatactt ttcgagacat tgaaaataat tgttgatata ttcctgaccc gcttcatcaa
     1501 tatttatctg atagtattta caaaagatat tctggaatgt tttattggct gaaacatctg
     1561 attttttata ttcagtttgg atataaatgt atggttcaat catttcggaa gtgatatttt
     1621 caatcacttt agaagcgttg tattcgatta tttttgcaat ttcaattatt cccattttga
     1681 taatacatga atttatgata gtattaaaaa agtgattgtt gatttaattc agggtagtct
     1741 accttctgaa gtatttcggg atagtttctg tctatttttg aattgcttgc aacttttgaa
     1801 atcgtatttg ctttcatgtt tctttcgtcg aatggcaaaa gaatggattt tatttcttcg
     1861 gtagttgata atggatttat ccatttatca gctgcttcaa ggtcgagtat taatggcatt
     1921 cgtttttttg agttgtgaat catttccata agaggattgg cgggagttgt aacgatactg
     1981 aaagtatcgt aaacttcgcc agatgtttta tctacccagg tatcgaaaac agaacccagg
     2041 agaaagcccg ggtctgttgt gggttctatg aaatatggat atttgttatt gttgaaatca
     2101 cgccattcaa aaaagccagt aaatggtaac agacatctac gagatatgat gttttgagcg
     2161 aaagagggtt tttcgtatat ggtttcacct tttgcgttta atgttttatc ccgcaattcg
     2221 agcgcatctt cttttgattt tacccaagaa ggaatgagcc cccattcttt caacgtgaat
     2281 tcattttcag ttattacagg taattttggg tgagcaaatc cacttaccat gaaaagattt
     2341 ggaatttccg gctccatcgg attctttttt ttctttctga tttttgctgg taggctattg
     2401 taatactgct ctgctgtcaa taatacacct tcacgtacaa ttgcgactgt aaaacacata
     2461 ctgatttata aattaggtat ttgaatatag gggaaaaatt cagactatta aatcaacagt
     2521 tgaaatatat tattggttca aatggaacaa aaaatctgaa acaaaatcac ttactttgtg
     2581 tttacataag acaacaaaaa agatatattc ataatgcagc atatcagaaa aatagcaaac
     2641 tcaacaaacc ttgactttta taccgccaat acgagttcac atatggaatt gccttttata
     2701 gacggtggta ttgctgctgg ttttccaagt ccggcacaag attatattga tctgaaaata
     2761 gatttgaata cagaattaat aagtaatcct tcaagtactt tttatgccag ggtaaaagga
     2821 acctccatgc aagacgcagg tattatggac ggtgatatat tggtcataga tagaagtctt
     2881 gaaccacatg acggagcgac agcagtttgt tttatagacg gtgaatttac attgaaattt
     2941 atcaaaatag aaaaggacgc catttattta gtccctgcaa atccgaagtt tcaacctata
     3001 aaagtaaccg aggataatga tttctgcata tggggaattg ttacttactc aataaaaagt
     3061 catatcagat aaacatcaaa gaaatgaaaa gagtattaat agattttttc aacttatgtt
     3121 ttccacctga taatgaaaac gaactaccac gaaattatga actaatttta ttctacgcta
     3181 ttttattcat attaataatt ctcgggttct ttttactaag ataaaatgtt tggacttatt
     3241 gattgcaata acttttatgc ttcgtgtgaa agggtgtttc aaccctcact aaatggcaaa
     3301 gccatcgttg ttttatcgaa caatgacggt tgtgttattg cacgttcagc agaagcaaaa
     3361 gcccttggta ttcctatggg tgaaccagca ttcaaattaa aggaattgat tgaaagaaat
     3421 caggttacag tgttttcttc taattatgta ctatatgggg atatgtcaca acgagtaatg
     3481 acaaccatta gtgagtttgt tccggaaatg gaaatttatt cgattgacga ggctttcctt
     3541 tatttgaatg gatttgagaa taacaatctc aatgacatgg gctcaaaatt aattcgtaca
     3601 gttaaaagga acaccgggat acctgtcagc ttagggatag caccaaccaa aacgcttgcg
     3661 aaggttgcca ataagtttgc taagaaatac aaaggatata atggagtttg tatcattgat
     3721 acagacgaaa aaagggaaaa ggcacttaaa ctgacaaaga ttggtgatgt gtgggggata
     3781 ggcagacaat ttactaagaa actggagtat tacagcatca atactgcttg ggattttacc
     3841 caacgaacca aaagttgggt tcggcaaaat atgggtgttg tgggagaaag aatgtggctt
     3901 gaattacgcg gaactccttg cattattacc gaatcaccca aagccaaaaa gacaatttgt
     3961 acttcacgga gt
//
LOCUS       DATDNM010000685         2679 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_937298, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000685 DATDNM010000000
VERSION     DATDNM010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_937298"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..568
                     /locus_tag="VI413_11605"
     CDS             <1..568
                     /locus_tag="VI413_11605"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0051073 - adenosylcobinamide-GDP
                     ribazoletransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HEY6915313.1"
                     /translation="LALAVRVLLTGGFHEDGLGDFFDGFGGGKTKADILRIMKDSHVG
                     SYALIGMLFYYLLLINTLISIPKELILLVLLVGDPLAKFLTTILMNLLSYARTESESK
                     SKTLYDKLSPVRLIVAGIFGILPMLFFIDKMLWISMIAPIAVVLFMLFYSKKKIGGYT
                     GDICGATALLCELSFYVAIYLQTSHLSQ"
     gene            565..1104
                     /gene="cobC"
                     /locus_tag="VI413_11610"
     CDS             565..1104
                     /gene="cobC"
                     /locus_tag="VI413_11610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013612651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043755 - alpha-ribazole phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ribazole phosphatase"
                     /protein_id="HEY6915314.1"
                     /translation="MKITVVRHTAVAVEPDICYGQSNVDVADSFEMEAALIITQLQHS
                     CFDAVYSSPSQRCTKLANYCGFKTPFLDSRLMELDFGDWEMKAWTEINDPQLKHWYAD
                     WINEKPTNGESFRDQIERVKSFLNDLQTKDYLNIAIFTHAGVIRALGVLLKKFPIENI
                     FGFKVEYGQVIEFGWFPEK"
     gene            complement(1220..1612)
                     /locus_tag="VI413_11615"
     CDS             complement(1220..1612)
                     /locus_tag="VI413_11615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005840877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WbuC family cupin fold metalloprotein"
                     /protein_id="HEY6915315.1"
                     /translation="MKIIDAELLDLVTKEAKESPRLRMNHNFHEKLDAKAQRLLNALE
                     PGTQLPIHRHMNTPETYFLVRGSLRVLFYDDNRELTESCELNSMKGKYGVDIPAGQWH
                     TIEVLESGTIIFEVKEGPYAPLEDKDIL"
     gene            complement(1645..>2679)
                     /locus_tag="VI413_11620"
     CDS             complement(1645..>2679)
                     /locus_tag="VI413_11620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidyltransferase"
                     /protein_id="HEY6915316.1"
                     /translation="GIGSDKTINHLKARKTINSDAERLYMVKALKVVKDAWINQGGGL
                     LDFLEELKTLQPDIFFVNVDGHTPDKEALCKEMGIEYVVSKRVPHGNLPARSTTALRK
                     ECKIPYRIDLAGGWLDQPYVSCFASGSVITICIEPDFEFNDRSGMSTSSRKKAIELWQ
                     TDIPDGDKEKLAKTLFCFENPPGSKYISGSQDSLGITLPGLNNFRYEGDYWPTKIQST
                     TDTEILSWIEERIWMIPLYPRNDSYDVLANKNINETGAKQLSLATDRCWAALLNKDAK
                     AVGESMTESFNAQIAMFPNMITHGVFEQIEQYKGKVLGWKLSGAGGGGYLIFFSEEPV
                     ENAIQIRIRR"
BASE COUNT          792 a          550 c          476 g          861 t
ORIGIN      
        1 cttagctctg gccgtaagag ttttactcac cggtggattt cacgaagatg gtctcggcga
       61 tttctttgat ggatttggag gaggaaaaac aaaagcggat atattgcgga taatgaaaga
      121 ttcgcacgta ggaagctatg cgttgatagg gatgcttttt tattatttat tgctgataaa
      181 cacgctgatt tccattccaa aagagctaat tctgttagtt cttttggttg gcgatccgtt
      241 agctaaattc ctaacaacaa tactaatgaa tcttttgtct tatgcccgca cagaaagcga
      301 aagcaagagc aaaacattat acgacaaatt aagtccggtt cgattaatcg ttgccggtat
      361 ttttggtatt cttccaatgt tattctttat agacaaaatg ctttggataa gcatgatagc
      421 tccaatagct gttgtattat ttatgctgtt ctattcgaaa aagaaaattg gagggtatac
      481 cggtgacatt tgcggagcta ctgcattgct ctgcgaatta agcttttatg ttgcaatcta
      541 tttacaaaca agccatttaa gccaatgaag ataactgttg tcagacatac agctgtagca
      601 gtcgaacccg atatctgtta cggtcaaagc aatgtggatg tagctgattc atttgaaatg
      661 gaagcagcgt taatcataac tcaacttcaa catagctgct ttgatgctgt ttatagcagt
      721 ccttcgcaac gttgcacgaa gctggctaac tactgcggat tcaaaactcc gtttctagac
      781 agcagattaa tggagctgga ttttggcgat tgggaaatga aagcctggac tgaaattaac
      841 gatccacaac ttaagcattg gtatgccgat tggataaacg aaaaaccaac gaatggtgaa
      901 tcatttcggg atcagattga aagagtcaaa agtttcctaa atgatctgca aacaaaagat
      961 tatctgaata ttgctatttt tacacatgca ggagtaatca gggcattagg agtacttctt
     1021 aagaaatttc caattgaaaa catctttggc tttaaagtgg agtatggtca ggttattgaa
     1081 tttgggtggt tccctgaaaa gtaatccaaa taaacatctg gtacctgatt ctgatctaat
     1141 acttatcgta ttgaacgaga aaaatccgac taaaaaacaa atatggacaa gttttcactt
     1201 gcccatattt tagaatcttt tataatatgt ctttatcttc taaaggtgca taaggccctt
     1261 ctttcacttc gaatataatt gttccggatt caagtacttc aatcgtatgc cattgacctg
     1321 caggaatatc aactccgtat ttacctttca ttgaatttaa ctcacaagat tcggttaact
     1381 cccgattatc atcataaaaa agcactctca aacttccacg aactagaaaa tacgtctccg
     1441 gagtattcat atgccggtgt ataggtagtt gagttccggg ttccaaagcg ttgagtaatc
     1501 gttgtgcttt tgcatctaac ttttcatgaa aattatggtt catccgcaaa cggggacttt
     1561 ccttagcctc tttggtaact aaatccaaaa gctctgcatc aattatcttc atctcactct
     1621 ttcttttaac tcattatcac atcatcaccg tctgattctt atttgaatcg cattctcaac
     1681 cggttcttcg ctgaaaaaga ttaaatatcc accacctccg gctccactca atttccaacc
     1741 caatactttt cccttatatt gttctatctg ctcaaaaaca ccatgagtta tcatatttgg
     1801 aaacatggct atctgcgcat taaaactttc agtcattgat tctcccactg cctttgcatc
     1861 tttatttaat aaggcagccc aacatctgtc agtagctaaa cttaattgct ttgctccagt
     1921 ttcatttata tttttgtttg ctaatacatc ataactatca tttcgtgggt aaagcggaat
     1981 catccaaatt cgttcttcaa tccatgataa tatttctgta tcggttgtac tttgaatttt
     2041 cgttggccaa taatcacctt cgtaacgaaa gttattcaaa ccgggtaatg taattccaag
     2101 agaatcctgc gaaccactta tgtatttgct tccaggagga ttttcaaaac aaaataatgt
     2161 ttttgcaagc ttctctttgt ctccatccgg aatatcagtt tgccaaagtt caatggcttt
     2221 cttccggctg ctggtcgaca tgccacttcg gtcgttaaat tcaaaatcag gttctataca
     2281 aatggttatt actgaacctg acgcaaaaca acttacataa ggctggtcaa gccatcctcc
     2341 tgctaaatca atccggtaag gaatcttgca ctctttgcgc aatgcagttg tggaacgggc
     2401 aggcaaatta ccatggggaa cacgtttact tacaacgtat tcaataccca tttctttaca
     2461 tagcgcttct ttatccggtg tatgtccatc tacattaaca aagaaaatat ccggttgcag
     2521 agtctttagt tcctctaaaa agtccaacaa gccaccaccc tgatttatcc acgcatcttt
     2581 cactactttc agagctttaa ccatataaag ccgttcagca tcagagttaa tcgtcttacg
     2641 ggcctttaaa tggttaatcg ttttatcgga accaatgcc
//
LOCUS       DATDNM010000686         2252 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1044221, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000686 DATDNM010000000
VERSION     DATDNM010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1044221"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            117..770
                     /locus_tag="VI413_11625"
     CDS             117..770
                     /locus_tag="VI413_11625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WbqC family protein"
                     /protein_id="HEY6915317.1"
                     /translation="MDAALHYQKSPLGDLGACLTSAYLAPVEYYSALANADTVYIENC
                     DYYIKQTYRNRCHIAAANGSMALSIPVEKAGKEKMLTRDVRISEHNDWQLQHWRSIES
                     AYNSTPFFEYYKDDLLPFYEKKWIFLWDFNQAIQSKVLELLDIQPEIKLTTEYRLKLD
                     EGVMDLRESIHPKKETPFVELKSYYQVFEQRYGFQPNLSIIDLLFNMGNESILTLIR"
     gene            792..1811
                     /locus_tag="VI413_11630"
     CDS             792..1811
                     /locus_tag="VI413_11630"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016273137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HEY6915318.1"
                     /translation="MEQIDWGNMGFGYMKTDFNIRCRFSNGAWGELETHDTEFLNLHM
                     AATCIHYGQEVFEGLKAFRGQDGKIRIFRMRDNALRMQDSCAGTLMAQLPVEKFEEAV
                     MKAVKLNERFIPPYESGASLYIRPFLFGTGPQVGVKPADEYLFIVFVTPVGPYFKGGF
                     QTTPFVIMREFDRSAPLGMGKYKVGGNYAASLVAGEKAHELGYSNIFYLDAREKKYID
                     ECGAANFFGIKNNTYVTPKSTSILPSITNKSLMVLAEDLGMTVEQRQVPVEELATFEE
                     AGACGTAAVISPIERIDDYDEKISYVFSKDGKPGPVCDKLYHKLRGIQYGDEPDTHGW
                     VTVVE"
BASE COUNT          693 a          378 c          509 g          672 t
ORIGIN      
        1 gataaagata agggctggtt tagcggaaaa atccgttgga acagattctt taaaaatgct
       61 gagaagtgac cccttaatcc cctaaagggg agattagaaa aataaattaa taagaaatgg
      121 atgctgcgtt gcattatcaa aagtcccctt taggggattt aggggcctgt cttacaagtg
      181 catatttggc tccggtggaa tattattccg ctttggcaaa tgcggatacg gtttatattg
      241 agaattgcga ttactacata aagcaaactt atcggaacag gtgtcatatt gcggcggcaa
      301 acggatcgat ggcattgagt attcctgttg aaaaagcggg aaaagaaaag atgttgacac
      361 gtgatgtccg gatttctgaa cataacgact ggcagttgca gcattggcgc tccatagagt
      421 cagcttataa ttctactccg ttttttgaat attataaaga tgatttattg cctttttatg
      481 agaaaaaatg gatatttttg tgggatttta atcaggcgat tcagtcgaaa gtgttagaat
      541 tgttagatat acagccggag attaaattaa ccactgaata ccgactgaaa ctggatgagg
      601 gtgtgatgga tttgcgagaa agtattcatc caaaaaagga aacccctttt gttgaattga
      661 aatcctatta tcaggttttt gaacaacgat acggatttca accaaactta agcattattg
      721 atttgctgtt taatatgggc aatgaatcaa tactgacttt gattagatag ataagactaa
      781 aatacgacga tatggaacag atagattggg ggaatatggg gtttggttat atgaagaccg
      841 actttaatat tcgttgcagg tttagcaatg gcgcctgggg tgagttggaa acgcacgata
      901 ccgagtttct gaatttgcac atggcggcta cttgcattca ctacggacag gaagtgttcg
      961 aagggttaaa ggcttttcgc ggacaagatg gtaaaatccg tatttttcga atgcgtgaca
     1021 atgcgttgcg tatgcaggat tcttgcgctg gaacattgat ggcgcaattg cctgttgaaa
     1081 aattcgaaga agccgtaatg aaagctgtca agctcaatga acgtttcatt ccgccttatg
     1141 aatcaggtgc ttcgttgtat atccgtccgt ttctgtttgg aacaggaccg caggttggag
     1201 taaaaccagc cgatgaatat ttgtttatcg tgtttgttac tccggttggt ccatatttca
     1261 aaggcggttt ccagacaact ccgtttgtta ttatgcgtga atttgaccgt tcggcaccac
     1321 tcggcatggg aaaatacaaa gtaggtggaa actatgcagc cagtctggtt gcaggtgaga
     1381 aagcgcatga attgggctat tcgaacattt tttatcttga cgcacgggaa aagaagtata
     1441 tcgatgaatg tggtgctgcc aacttcttcg gaattaaaaa taatacatac gtaactccga
     1501 aatctacttc tattctgcca tcgataacta acaaaagttt gatggtgctg gctgaagatt
     1561 tgggaatgac agtggagcag cgtcaggtgc cggtagaaga actggctacg tttgaagaag
     1621 cgggtgcttg tggaactgca gctgtaatca gccctattga gcgtattgat gactatgatg
     1681 aaaaaatatc atacgttttc tcaaaagatg gcaagccagg cccggtttgc gataaattgt
     1741 accataaact tcggggtatc cagtatggtg acgagccgga tacgcacggt tgggtgactg
     1801 ttgttgaata atgagttgat atgatgatta gctgatgtga taattagttg atgtgataat
     1861 gtatgattag gtgttatgat gatttgtgaa cgtttgtatt gatactaaag ctcattatat
     1921 ctttttaatt acatacacat aatatagaaa ttggtttcgt agtttttaat tgcgtatatc
     1981 cctattagac cgcgattaaa aatcgcgaaa cccattttaa aagcaataat ttcactcctt
     2041 aggacacatt actaataatc ttggaattaa tcaattgcca catcacatca actaatcatc
     2101 acaaaaacta atcatcacat tatcaaatca tcacatcacc acatcagcta atcatcacat
     2161 tatcacatca aaaacatgat ttcaaaaaac gatgtttttc ctatcggaca aatcactaag
     2221 ccacatggcg tgaatggtga aatgtcattt tc
//
LOCUS       DATDNM010000687         5009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1044228, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000687 DATDNM010000000
VERSION     DATDNM010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5009
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1044228"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VI413_11635"
     CDS             complement(<1..185)
                     /locus_tag="VI413_11635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915319.1"
                     /translation="MANAQSPSDYYHMTANYYIQGEKKSAKKIIQEAISKYPNDPKLK
                     QLAAKVNKLPDEDDKKN"
     gene            complement(239..883)
                     /locus_tag="VI413_11640"
     CDS             complement(239..883)
                     /locus_tag="VI413_11640"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6915320.1"
                     /translation="MKKFGCIVMMSLITFSFSVWAQKESNDVRAGNKLYKSSKFTEAE
                     IAYRKGLVLNPKSFEANYNLGNALFKQKKYTEALDQYKVALELKPSEKSKIAAAYHNT
                     GNALLADNQVEESVIAYKSALKSNPKDDETRYNLAYAQMMLKKQQQEQKKQDKQKKPD
                     DREADKIKKKADELVAQRKYKEAYDLMKEAEKINPQMKKYADFTNRILDVIKMN"
     gene            complement(916..1959)
                     /locus_tag="VI413_11645"
     CDS             complement(916..1959)
                     /locus_tag="VI413_11645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY6915321.1"
                     /translation="MFKFAHPEYLFLLFLIPILTGVFIYTGIKRRRNIKQFGNPDLLA
                     ELMPNVSFIRPQVKFYFQLITIVLLIIVLAQPQFGTKQETVKRKGIEVMIALDVSNSM
                     LAQDIQPSRLEKAKQVLSKLVDGMTDDKIGLIVFAGDAYTQLPITVDYVSTKMFFSTI
                     SPNLVPRQGTAVGSAIDLAIKSFGAKGSAGRAIIVITDGENHEDDAIGAAKLAAENDI
                     AVHVIGMGKPDGAPIPVPGTMSFWKDKDGNVVVSKLNEQMCRDIAAAGKGVYVRADNS
                     NAAYRVVEKELDTLAKSDIKTSSFSDYNDQYQSFALLALIILIVDFFVFDRKNKRLSK
                     IKIFDIKEKVTKN"
     gene            complement(2018..3001)
                     /locus_tag="VI413_11650"
     CDS             complement(2018..3001)
                     /locus_tag="VI413_11650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004291042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY6915322.1"
                     /translation="MTFHNPEYLFLLLLLIPIIYWYIKEMHKSDASLQISSHRNLLQF
                     SKSKKIKLRHIPFVLRTLAIAFIIIALARPQASNSWRTENTEGIDIMMALDISGTMMG
                     EDLKPNRLEASKTVASEFIMSRPNDNIGLVVFSGESFTQCPLTTDHAVLINLFKAVNY
                     GMIEDGTAIGLGLANAVNRIKDSKAKSKVIILLTDGSNNRGDIAPITAAEIAKTFGIR
                     VYAIGVGSYGMVNVPVQTPMGIQYQQMESEFDEKSLQDIAAMTGGKYFRATDNSKLRK
                     IYQEIDQLEKTKIKIREYSKKEEQFYVFSLIAFIFLGMEVLLRNTYFRKIP"
     gene            complement(3046..4017)
                     /locus_tag="VI413_11655"
     CDS             complement(3046..4017)
                     /locus_tag="VI413_11655"
                     /inference="COORDINATES: protein motif:HMM:NF024973.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BatD family protein"
                     /protein_id="HEY6915323.1"
                     /translation="MRKYCLMLFLFVALAHTGIWAQKITVNARLDSTVLRIGEQTHLT
                     FEVSQQPNQKVVMPIFSDTIKGGLEMVEPVKIDTVKSADGHIQVTQHYVVTAFEDSLL
                     YIPPFPFVLNGDTVWSKSLSLKVVQPFKIDTASNQLADIKPVMEPKYDWQGLIVKVLI
                     VLGICGLLALLYFLYRKYLKAKPVLDVKSQELLLPAHVVALNYLDKIKQEKAWQQGRS
                     KEYHTELTDVIRSYIERMFNINSLEMTSEEILDQFRLMRMEQKSVYLSLQQILKLADL
                     VKFAKWDATPDEHELSLLNAYLFVNQTKIEDVKPLEEIKNEESKEHK"
     gene            complement(4077..4943)
                     /locus_tag="VI413_11660"
     CDS             complement(4077..4943)
                     /locus_tag="VI413_11660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006844553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEY6915324.1"
                     /translation="METSELIKKVRKIEIKTRGLSKNIFAGEYHSAFKGRGMTFAEVR
                     EYQYGDDIRSIDWNVTARFGHPYIKIFEEERELTVCLLIDVSGSREFGTVSQLKKDII
                     TEVAATLAFSTIQNNDKIGVIFFSDKIEKFIPPKKGKKHVLHIIRELIDFQPESNQTD
                     IAGALRYFTNAIKKSSTAFIISDFIDKNFEKELTIANRKHDIVALQVFDIRETELPNV
                     GLIKLKDAETGQRIWVDTSDKRLRTTYKHAWGESQLALQKSFTKSGVDLVSMSTSDDY
                     VRALMKLFKMRA"
BASE COUNT         1483 a         1054 c          759 g         1713 t
ORIGIN      
        1 tgattttttt tatcatcttc atccggcaat ttattcactt ttgcagccag ctgctttaat
       61 tttggatcat tcggatattt actaattgcc tcttgtatta tttttttcgc actcttcttt
      121 tctccctgaa tataataatt ggctgtcata tggtaataat cacttggtga ttgtgcatta
      181 gccataataa cagtgaaaag aaatattgaa attattgaca ttctccttat taacataact
      241 aattcatttt tattacatcc aaaattctat tagtaaaatc agcatacttc ttcatttgtg
      301 gattaatctt ttctgcttct ttcattaagt catatgcttc cttatatttt cgttgagcaa
      361 caagttcatc tgctttcttt tttatcttgt cagcttctct atcatcaggt ttcttttgct
      421 tatcttgctt tttttgttcc tgttgttgtt tttttaacat catttgtgcg taagccagat
      481 tataacgggt ttcatcatct tttggattac tttttaacgc tgacttatag gcaattacac
      541 tctcttctac ctgattgtca gccaacaagg catttccagt attatgatat gccgctgcaa
      601 ttttgctttt ttcactaggt ttaagctcta atgcaacttt atattgatcc aatgcctctg
      661 tatatttctt ttgtttaaat aaggcattcc ccaaattata gtttgcctca aacgattttg
      721 gattcagaac caagccttta cgataagcta tttcggcctc cgtaaatttc gaagacttat
      781 acaatttatt cccggcccgt acatcattgc tctccttttg agcccaaacc gaaaacgaaa
      841 acgtaatcaa actcatcatc actatgcatc cgaacttttt cattggttga aatgtaaata
      901 gtgaattttc catcatcaat tctttgtaac cttctctttt atatcaaaga ttttaatttt
      961 gctaagtcgt ttatttttgc ggtcaaaaac aaagaagtcg actatcaata ttatcaatgc
     1021 cagtaaagca aaagattgat attggtcatt gtaatcagag aaagaacttg ttttgatatc
     1081 agacttggct aatgtatcca gttccttctc tacaacccga tatgctgcat tgctattatc
     1141 ggcacgaaca taaacgcctt ttccagccgc tgcgatatcg cgacacattt gctcgtttaa
     1201 tttcgaaaca accacgttac catccttatc tttccaaaaa ctcatcgttc cgggaacagg
     1261 aattggagca ccgtcaggct tacccattcc aattacatga acagctatat cattttcagc
     1321 agcaagttta gccgctccaa tggcatcatc ctcgtgattt tccccatccg taatcacaat
     1381 tattgctcgt ccggcactac ctttagcccc aaaagatttg attgctaaat caattgcact
     1441 tcctacagca gtaccctgac gtggtaccag attaggcgaa atagttgaga aaaacatttt
     1501 tgtagacaca taatccactg ttattggcag ttgagtatat gcatctccgg caaatacaat
     1561 caaaccaatt ttgtcatctg tcataccatc aaccagttta gataaaacct gtttggcttt
     1621 ttccaggcga ctcggttgta tatcttgtgc cagcatcgaa ttcgatacat caagtgcaat
     1681 cattacttct attccctttc gtttgacagt ctcttgctta gttccgaatt gcggctgtgc
     1741 caaaacaata atcaacaaaa caattgttat taattgaaaa taaaatttaa cttgcggacg
     1801 tataaatgac acattcggca tcaactccgc caacaaatcc ggatttccga attgcttaat
     1861 attccggcgt cttttaatgc cggtataaat aaatactcct gttaatatcg gaattaagaa
     1921 gagtaaaaat aaatattcag gatgtgcaaa tttaaacatt gtatagttga ataattaaaa
     1981 tctgttttgt ttttcgaatg cttcgactcc gatataatta cggtattttc cggaaatatg
     2041 tatttcttag aagtacttcc atgcccagga aaataaacgc gatcaagcta aacacataaa
     2101 attgttcttc ttttttgctg tattccctga tcttgatttt ggttttttcc aattgatcta
     2161 tctcctgata aattttacgc aattttgaat tatccgtcgc cctgaaatac ttccctcctg
     2221 tcatggctgc aatatcctgc aacgattttt catcaaattc agactccatt tgctgatatt
     2281 gaattcccat tggagtttgt acgggtacat tcaccatgcc atacgaacca acaccaattg
     2341 cataaacccg aatgccaaat gttttagcaa tttcagcagc tgttatcgga gcaatatcac
     2401 cgcggttgtt agacccatcc gtcaggagta taattacttt tgactttgct ttactatcct
     2461 ttatccggtt taccgcattt gccaacccca atccaatagc tgttccatct tcaatcattc
     2521 cgtaattcac ggctttaaac aggtttatta aaacggcatg atcagttgtc aatggacatt
     2581 gtgtaaaact ttcgccggaa aaaaccacta aaccgatatt atcattcggt cttgacataa
     2641 tgaattcgga agcaactgtt tttgaagcct cgagtcgatt cggtttgagg tcttcaccca
     2701 tcatggttcc tgaaatatcg agcgccatca ttatatctat tccctcagtg ttttcagtcc
     2761 gccagctatt cgaagcctgc ggacgagcta aagctataat aataaatgca atagctaaag
     2821 tgcgcaacac aaatggtata tggcgaagtt ttattttttt gcttttagaa aattgtagca
     2881 gattccgatg tgacgaaatc tgcagacttg catccgattt atgcatttcc ttgatatacc
     2941 aatatattat tggaatcaag agcagtagta aaaataaata ttccggatta tgaaatgtca
     3001 tcgctaaata gtaattattt taataattaa aactctaaaa aagctttact tgtgctcttt
     3061 cgattcttcg ttctttattt cttccaatgg ttttacatct tctatttttg tttgattaac
     3121 aaacaaataa gcattcaata aacttagctc gtgctcatca ggagttgcat cccattttgc
     3181 aaacttcact aaatctgcca gcttcaaaat ttgctgcaaa cttaaatata cagatttctg
     3241 ctccattcgc atcaaacgga attgatccaa tatttcctca gaagtcattt ccaggctatt
     3301 gatgttgaac attcgctcaa tgtaagatct gattacatcg gtcagctcag tatgatattc
     3361 ctttgaacga ccctgttgcc atgctttttc ctgtttgatt ttatccaggt aattcaatgc
     3421 aacaacatga gccggaagta gaagttcctg actttttaca tccaaaacgg gctttgcttt
     3481 taaatatttg cgatataaga aataaagtaa agctaataat ccacaaattc ccagcacaat
     3541 aagaacctta acaatcagtc cctgccagtc atatttgggt tccattaccg gttttatatc
     3601 tgcaagctga ttcgaagctg tatctatttt aaaaggctga actactttta aagaaagtga
     3661 tttagaccaa acagtatcac cgtttaaaac aaatggaaaa ggtggaatat atagcaatga
     3721 atcttcaaaa gccgtaacca cataatgctg tgttacctga atatgcccat cagctgattt
     3781 aacagtatct attttaacag gctcaaccat ttcaaggcca ccctttatcg tatcagaaaa
     3841 aatcggcata accactttct gattcggctg ttgcgaaacc tcaaatgtca aatgcgtttg
     3901 ttctccaatt ctcaaaactg ttgaatccaa ccgtgcattt acagttattt tttgagccca
     3961 tataccagta tgagccaacg caacgaaaag aaacaacatt aaacagtatt ttctcataca
     4021 atcaaattct caattttgca attgtaaatt gtaaataata aaatcgtcgg taaatttcag
     4081 gctctcatct taaaaagttt cattaaagca cgaacgtaat cgtcggaagt actcattgaa
     4141 actaaatcaa cacctgattt tgtaaatgat ttttgcaaag ctagctgact ttcgccccat
     4201 gcatgtttgt aagttgtacg aagccgttta tctgaagtat ccacccagat tctctgcccg
     4261 gtttctgcat ctttcaactt tatcaaccca acattaggca gttctgtttc acgaatatca
     4321 aaaacctgca aagctacaat atcatgtttt ctgttggcta ttgtcaactc tttttcaaag
     4381 tttttatcaa taaaatcgga aatgataaag gctgttgagc tttttttgat agcgttggtg
     4441 aaataacgta aagctccggc aatgtcagtt tgattacttt ccggttggaa atcaatcagc
     4501 tcacgaataa tatgcaaaac gtgttttttc ccttttttgg gcggaataaa tttttcaatt
     4561 ttatccgaaa agaaaatcac accaatttta tcgttatttt gaatagtaga aaaagccagt
     4621 gttgcagcaa cttccgtaat aatgtctttc tttagttgcg atactgtacc aaattcccgg
     4681 ctacccgaaa catcaatcag taaacatacc gttaactcgc gttcttcttc aaaaatcttt
     4741 atatacggat gtccgaaccg cgcagtcacg ttccagtcaa tcgaccggat atcatcacca
     4801 tattgatact cacgcacttc ggcaaaggtc ataccccgac ctttaaaagc cgaatgatat
     4861 tcgcccgcaa agatattctt tgacaagcca cgtgtcttta tttcaatttt tcggactttc
     4921 tttattaatt cgctggtttc cataattcca attcgccttt acggcaatgt gtcaatatgc
     4981 taattttcat acacaaacaa tatattctt
//
LOCUS       DATDNM010000688         3025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1685324, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000688 DATDNM010000000
VERSION     DATDNM010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1685324"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..418
                     /locus_tag="VI413_11665"
     CDS             <1..418
                     /locus_tag="VI413_11665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004318290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thrombospondin type 3 repeat-containing protein"
                     /protein_id="HEY6915325.1"
                     /translation="GATFPKRDAVDARVVKTVITGKPIYVENAPLFIPKYVKRRLPVD
                     SYKKGIITDIRQVGGLPEYKGQPYTDSDNDGMPDAWEKANGLNPNDPADAVKDCNGDG
                     YTNIEKYINGIDTKKKVDWKKPKNNHDTLAGRTSLL"
     gene            446..>3025
                     /locus_tag="VI413_11670"
     CDS             446..>3025
                     /locus_tag="VI413_11670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004309750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6298 domain-containing protein"
                     /protein_id="HEY6915326.1"
                     /translation="MKLLRFSFLTFCILSLNSFLSVSAQNFSLQVKDGKISYSQDAKG
                     NRILDFSYCGYKSSEQDIPNISNVIFVPKQDGDASEIIQRAINHVSALKPDARGFRGA
                     ILLDKGVYNLDKNLWIQASGVVLRGSDKRETVLLKHGVDRSALLHIEGVNNQALKDSF
                     KLVSSYIPVNQRTIELASIGKLKIGDVLKIIRPSTKEWIKSVGCDIYGGGISALGWKP
                     GDIDVSWDRTIIAINGNVVTINAPLTVAIDAQFGGAKVFKYEWSGRISESGVENLTMI
                     SDYDKKYLKDEDHCWTGVSIENAENCWVRQINFSHFAGNAVFLQPATSKITVEDCISK
                     DPVSEIGGFRRITFYTMGQQNLFQRCYSENGINDFAAGYCAPGPNAFVQCEAKNALSF
                     SGAIDAWACGLLFDVVNIDGHNLTFKNLGQSKNGAGWGTANSLFWQCSAAEIECYSPS
                     QDAKNRAYGCWAQFSGDGEWAESNNHVQPRSIYYAQLAARLNQDVSARGRVLQKNTDA
                     SSSPPVADAQRMMKEAYEPLLTTEMWINQAVFTPSVDHSKLMTTSELKSKPMKIRAYV
                     PTIAIENGRIVRDGALIAGDKLDVQWWSGKLKPNYIATYLTKAHVTRFVPGREGFGLT
                     DRVDSVISYFKTNGISVLDHNYGLWADRRRDDHERIRRRDGDVWGPFYEQPFGRSGEG
                     VAWDGLSKYDLNRPNAWYWYRLKEFADKGQKAGMLLFHENFFQHNIIEAGAHWVDSPW
                     RTANNINDLGFPEPVNFAGDKRIFRAEMFYDISNPVRRQYYRSYIRQCLNNFADNKNV
                     VQLISAEYTGPLHFVQFWLDVIDEWQKETGKDAMVALSTTKDVQDSILSDPKRAAVVD
                     IIDI"
BASE COUNT          885 a          552 c          733 g          855 t
ORIGIN      
        1 aggcgctact ttcccaaaac gtgatgcggt ggatgcacgc gtggtaaaaa cagttattac
       61 cggcaagcca atctatgtgg aaaatgctcc gttatttatt cccaaatatg taaagcgtcg
      121 ccttccggtc gattcgtaca aaaaaggaat tattacagat attcgtcagg tgggcggact
      181 gcctgaatat aaaggacaac cgtatacaga ttctgataac gacggaatgc ccgatgcctg
      241 ggaaaaagca aacggcctga atccgaatga tccggcagat gcagtgaaag attgcaacgg
      301 tgatggttat accaatattg agaagtatat caacggcatt gatactaaaa agaaagtaga
      361 ctggaaaaaa ccgaaaaata atcacgatac gcttgccggt cgaacaagtt tgctctgata
      421 ataaattgaa aaacatataa ttgtaatgaa attattaaga ttctcattcc tgactttttg
      481 tatattaagc ctcaattctt ttttgtcagt aagcgcacaa aatttttcgc ttcaggtaaa
      541 agatggaaaa ataagctatt cgcaagatgc taaaggaaat cgtattctcg atttttctta
      601 ttgtggctac aaaagttcgg aacaagacat tccgaatatc agcaatgtca tttttgtacc
      661 aaaacaagat ggcgatgctt cggaaatcat acagcgggct attaatcatg tgtccgcatt
      721 gaaacccgat gctcgtggtt tccgtggagc aatattgctg gacaaaggtg tttataatct
      781 tgataaaaat ctttggattc aggcttcagg cgtggtattg cgaggttcgg ataaacgtga
      841 aactgtattg ctgaaacatg gagtcgatcg cagcgcgttg ttgcacatag aaggggtaaa
      901 caatcaggca cttaaagatt cattcaaact cgtttcaagt tatatcccgg taaatcagcg
      961 gacgattgaa ttggcttcaa ttggcaaact gaagattggc gacgtcctga aaattattcg
     1021 tccttctacc aaagaatgga ttaaatcggt tggttgcgat atttatggcg gcggtatcag
     1081 cgccttgggt tggaagccgg gcgatataga tgttagttgg gatcgtacaa ttatagctat
     1141 caatggaaat gtggtaacta tcaatgcacc tttaacggtg gcaatcgatg ctcagtttgg
     1201 tggagctaaa gtgttcaaat atgaatggag cgggcgtatt tcggagtcgg gagtcgaaaa
     1261 tctgaccatg atttccgatt acgataaaaa atacctgaaa gatgaagatc attgctggac
     1321 gggagtttcc attgagaatg ctgaaaactg ctgggtgcgt caaatcaatt tttcccattt
     1381 tgccggaaat gccgtttttt tgcagcctgc aacttctaag attactgttg aagattgtat
     1441 ttccaaagac cccgtttctg aaataggcgg ttttcgtcgg attacgtttt acaccatggg
     1501 tcagcagaat ttgtttcaac gttgctactc agagaatggc ataaatgatt ttgcagccgg
     1561 atattgtgcg ccaggaccaa atgcatttgt gcagtgtgag gctaaaaatg cactgagttt
     1621 cagtggagcc attgatgcct gggcttgcgg attgttgttc gatgtggtaa atatcgatgg
     1681 tcataacctg actttcaaaa atctggggca aagtaaaaat ggtgcaggtt ggggaacggc
     1741 taacagtcta ttctggcagt gttcggctgc agaaatagag tgttattcgc cttcgcaaga
     1801 tgccaaaaac agagcttatg gttgttgggc gcaattctca ggagacggag agtgggcaga
     1861 atcaaataat catgtacagc cacgaagcat ttattatgcg caacttgccg cgcgtttaaa
     1921 tcaggatgtt tcggctcggg gacgtgtttt acaaaaaaat actgatgcat caagcagtcc
     1981 gcctgtggca gatgctcaac gaatgatgaa agaagcttac gaaccacttc ttaccaccga
     2041 aatgtggata aatcaggcag tttttactcc ttctgtcgac cactcaaagt taatgactac
     2101 aagtgagttg aaaagcaaac cgatgaaaat ccgggcgtat gtaccaacca ttgctattga
     2161 aaatggccgg attgtgagag atggagcatt aattgcaggt gataaacttg atgtgcaatg
     2221 gtggagcggt aaattaaaac cgaattatat tgctacatac cttaccaaag ctcacgttac
     2281 ccgttttgtt cctgggcgcg aaggttttgg gttgaccgac cgcgtcgatt cggtaatctc
     2341 ctattttaaa actaatggaa tttcggttct tgaccataat tatggcctat gggcagatcg
     2401 ccgccgggat gatcatgaac gtattcgtcg tcgggatggt gatgtttggg gcccgtttta
     2461 cgagcaacct ttcggtcgga gtggtgaagg tgtggcttgg gatggtttgt caaaatatga
     2521 cctgaatcgc ccgaatgcat ggtactggta ccgcttgaag gaatttgccg ataaaggtca
     2581 aaaagcaggt atgcttctgt ttcacgaaaa cttctttcag cacaatatta tcgaagccgg
     2641 agcccattgg gtcgatagtc cgtggcgtac ggccaataat attaatgatc ttggatttcc
     2701 tgagccggtt aattttgccg gtgataaacg tattttcaga gctgaaatgt tttacgatat
     2761 ttcaaatcca gttaggaggc aatattaccg gagttatatt cgccagtgtt tgaataattt
     2821 tgccgacaac aaaaatgtag ttcaattgat aagcgcagaa tatacaggtc cgcttcattt
     2881 tgtccaattc tggttggatg tgattgatga atggcaaaaa gaaaccggca aagatgcaat
     2941 ggttgcgtta agtactacaa aagatgtgca ggattctatt ctttctgatc cgaaacgggc
     3001 agctgtggtt gatattatcg acatt
//
LOCUS       DATDNM010000689         2637 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_937492, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000689 DATDNM010000000
VERSION     DATDNM010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_937492"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2042)
                     /locus_tag="VI413_11675"
     CDS             complement(<1..2042)
                     /locus_tag="VI413_11675"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEY6915327.1"
                     /translation="MKRFLILLFSGFFVLSLFASTSIKGKIIDAGTESPIDFVSVAVF
                     HQDSKTVTKSMVSNQNGEFEIPALPKGKYTIRLSYVGYNTLNMPLEYNGDDMNLGVVK
                     LQSNNKQLKEVEVVGQGTTVKFEVDKKVFSVDQNIAAAGGSASEVLQNIPSVTVDNEG
                     NVALRNSTAVEVWINGKPSGLTAENRGQILQQMPAESIESVEVMTNPSAKFKAEGSAG
                     IINLVLKKNRKAGYYGSLSVGGLYNTNANKLGGTLGGNFSYSSKKLDANVNVGYRRMN
                     MPSGGWSDRKNYLNGDTLNLHQENDYLRSMGGLFSRLSLDYHISDNNTLSFSGFGMLG
                     GGTSANKIDYLQTNFNKNDLVLKDYYRNTTSDGTRRHMHSNLDFQHDFDKKGSNIIFS
                     LGYSAFAMSDSSRYKQTENLNSGFVSSYLSQAGGGNSNEYEFKVDFTKKFSENSKLEA
                     GWESNLEHQISNASGYDFITSQVIDSYYNKFDYTEQNHAAYATYGNRFDKLNVQVGLR
                     AEYYSKAFTYNAFNAVETLKPTGYLKPFPSLFLSYSLPKNNEIQLNVTSRVNRPRGMQ
                     INPYKNYSDSTNISYGNPELTPEYTSAYEFNYIKTWENHSLSGSAYYRFTDKVIQGIS
                     FMKDGIMQSTSMNLTKQQNSGVELVAKNRIFQIVNLTSSLNFYYSKMDSASYIKNDT"
BASE COUNT          750 a          551 c          490 g          846 t
ORIGIN      
        1 gtatcatttt taatatagct ggccgaatcc attttgctgt aatagaagtt cagtgatgaa
       61 gtcaggttga caatctggaa gatacgattc ttagctacca gttcaacacc ggaattctgt
      121 tgcttggtca ggttcatcga agtactttgc ataatgccat ccttcataaa gctgataccc
      181 tgtataacct tgtcagtaaa gcggtaataa gccgaaccgg agagcgagtg attctcccag
      241 gttttgatat aattaaactc gtaagctgag gtgtattcag gtgtcagttc agggttaccg
      301 taagatatat ttgttgaatc ggagtaattc ttatacggat taatttgcat tcctctcgga
      361 cggtttacac gacttgttac atttaattgt atttcgttgt ttttaggcaa actataagac
      421 aggaacaaac ttgggaaagg ttttaaatat cctgtaggct taagagtctc cactgcatta
      481 aatgcattgt aagtaaaggc ttttgaataa tactcagccc ttagccccac ctgaacattc
      541 agtttatcaa aacgattgcc atacgtggca tatgctgcat gattctgttc ggtataatca
      601 aacttgttgt aatatgaatc aattacctga gaggttatga aatcatagcc tgatgcatta
      661 cttatctgat gctccagatt cgattcccag cctgcttcca gtttgctgtt ctcagaaaac
      721 tttttggtga aatccacttt gaattcatat tcattgctat ttcctccgcc ggcttgcgat
      781 aagtaagacg aaacaaagcc actgttcaaa ttctcagttt gtttgtagcg cgaagaatcc
      841 gacatggcaa aagccgaata gcccaggcta aagatgatat ttgatccttt tttgtcgaaa
      901 tcgtgctgga aatcaaggtt ggaatgcata tgcctgcgtg tgccgtccga cgtagtattc
      961 cggtagtaat ctttcaatac caaatcgttt ttgttgaaat tggtctgcag gtaatctatt
     1021 ttgttagcag aggttcctcc acccaacatt ccgaagcccg aaaaactcaa cgtgttattg
     1081 tcgctgatat gataatcgag ggataagcgg ctaaacaagc ctcccatcga acggaggtaa
     1141 tcgttttcct gatgaagatt aagcgtatct ccgttcaggt agtttttacg gtcgctccag
     1201 cctccactgg gcatattcat ccgacgatag ccaacattga cattggcatc cagttttttg
     1261 ctggaataac taaaattgcc gcctaatgtt ccaccgagtt tatttgcatt ggtgttatac
     1321 aacccaccaa cagaaagact gccataatat ccggctttcc tgtttttctt cagcaccagg
     1381 ttgataatac cggccgaacc ttccgctttg aattttgcag aaggatttgt catgacctca
     1441 acagattcaa tgctctcagc gggcatttgt tgtaaaattt gccctctgtt ttcggctgtc
     1501 agccccgatg gtttgccatt aatccacact tccacggccg tactgttgcg caatgccaca
     1561 tttccttcgt tatcgactgt caccgaagga atgttttgca atacttccga ggcagaccca
     1621 cctgctgccg caatattctg atccacactg aacacttttt tgtcaacttc gaattttacg
     1681 gtagtacctt gcccaaccac ttcaacctct ttcaattgct tgttgttgct ttgaagttta
     1741 accacgccca gattcatatc atcgccattg tattccaatg gcatattaag ggtattgtag
     1801 cccacgtaac tcaaacgaat ggtgtatttc cctttgggga gagccggaat ttcaaattcc
     1861 ccgttttggt tcgaaaccat gcttttggtt actgttttcg aatcctggtg gaatactgca
     1921 acgcttacga aatcaatagg tgactctgtt ccggcatcta taattttacc ttttatactg
     1981 gttgatgcaa ataaagaaag aacaaaaaag cctgaaaata aaagaataag aaatcttttc
     2041 ataccttata aataaatacc taaaataatt tttttatacc taaatgagat tatatagacg
     2101 caaaaaccac gccttggttt aatctttaaa tgtcaatata tattaaatga atacgaggcg
     2161 caaaagtact taacgcctcg tcttctatat tgttttccgt tatttagaga tccgaaaata
     2221 tactttgttc tttacctaac aggttttccg aaacctgtcc tccccggcat gctcattaaa
     2281 tgtataaaaa ttccggcctg ttaatgggat ctgcgatccc agttcttgta tccgttggat
     2341 ttttaatcca atagcatatc aggatgtaaa gctgatttct ttctttcgga ttacaaatcc
     2401 taagaataca gaaggcggga gtttgttttt ctcatgcttt tattttggca aagccaaatc
     2461 cgatacatta cccaactaat ttttattcac taaaaagtcc gtgtcaataa ctattgaagt
     2521 cagagtatca ttattgaaat aataataatg agaaatccca agaacatccc aatagaattt
     2581 cacaacattc atttccgaca tattgcattt gatggatgta ggtaatatgt tgaagaa
//
LOCUS       DATDNM010000690         6857 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1791258, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000690 DATDNM010000000
VERSION     DATDNM010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6857
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1791258"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2852)
                     /locus_tag="VI413_11680"
     CDS             complement(<1..2852)
                     /locus_tag="VI413_11680"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6915328.1"
                     /translation="MKNNLTILYTNKMPISFKHRCITALLMVLLFSPSVMAQNKATEK
                     SQHVFSGYVLDAHSKKPVAAAQITVADKSASAITDDKGRFSLKASARNVVLVVSAYDY
                     NPTEIAVRSKDSIVVKLYSDQFSNYFRKVNGINGTIDNSAMTSATKSIDNIKNSSAIT
                     IDELIQTELGADARAVNRSAVAGIGSSLFIRGINSLNANAQPLFVVDGVIWNSFSDVS
                     SIHLGFFSNPLDVIEMSDIESISVVKDGTGIYGSKATNGVVLIKTKRSTSEVTKIGLN
                     IFTGVTTAPSSIPMMSGEQFRVYASDMLNSKSAVGNDVSDYGFLETNPANIKTYKSNH
                     NNSDWADEVYQLGATNNYIINADGGDDKAKYYFSLGHTNNKGVVKTTDMQRYSIRLNA
                     DVKMNTIFDLGLNIGYSRIERSLVDDGVDKYYSPTWASITKAPFLSPYNYTSTGELTY
                     DYANADEFGIGNPGGMLKYEQSKLIKNRFNLGILPSIKITPELTLSSQVDYNLTRTTE
                     GRFIPVGFTASRIIPDQGVSNNMINNQVIRNQAIFDDTRLTFEKNIDKSNHIKALLGW
                     RYIANYFESDYVEEHNTKLNLNTTITGTRDFKQAYGLNNWTKSISNYASVDYNFGNKY
                     FLSATAAIDGSSRFGTKTADGFQLFGRSWGVFPSINAAWIVSSEDFMRNQQLIDFCKV
                     RAGFGVSGNDGMLDYQSMAYFLSTRYMDKANGLVISNLENTSIQWETTGKLNAGIDVS
                     LLDNRLSVSFDYFNSNTSNLLVQKELPIVSGLAKYWDNDGKLNNHGFELSANLKMFNF
                     KDLKWELGASVGHYNNEITELNSGTFTTQVYEGEVISKVGESAGSFYGYKTMGVFSTQ
                     AEADAAGLTMKNADGTISQFGAGDVIFEDKVQDGIIDENDKQIIGNPNPDFYGTITNK
                     FSYKRFTLNTIFTYSYGNDVYNYFRSQLEAGKDFSN"
     gene            complement(2946..4526)
                     /locus_tag="VI413_11685"
     CDS             complement(2946..4526)
                     /locus_tag="VI413_11685"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6915329.1"
                     /translation="MKLKKFGIPFFALLAMITLSVSCKDEWENHYNSKVITRSDLNLY
                     QYIESRDDLSKFRDMLKIVGYDSILTKTQTYTVWAPTNDALAGVDLSDTVLVKKLVNN
                     HITRFSYPTSGVTSKIILMFNKKLIVFAKGSNGYTFGDKLIVEPDLAMSNGIIHVLGQ
                     YAPYMKNIWEFINETDGLDSIRAFMKSVTYKTFDLEGSFKEGVFVDSVYKETNYILDT
                     IAHLKVEDSLYTAILPDNNAWKTAYDQAFTYFNMLPKDGGIKAQVSNTRKAIINDLFF
                     NGKYYTAQPKDSIYSTYFMNKFKNPTRLFDGAQMYEMSNGLSYVTSQLKADPKETWLK
                     DIRIEAEDTYWGRITTNYTASRLSSVGTSFSVSRKSYLGLTDASLSSLSKLAVTFPLP
                     GTLSGKYNIYCVFVPTKIVDANDTRPFKVKFYLSYVNNVKAQVNFAAVDANHKVLTPT
                     STAATYITNPNAVDEMLVAENFQFPYANLLDWRSQDFPKNISVVLKVENATPKTALEQ
                     VSYNRNLRIDCIILKPVQ"
     gene            complement(4563..6494)
                     /locus_tag="VI413_11690"
     CDS             complement(4563..6494)
                     /locus_tag="VI413_11690"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6915330.1"
                     /translation="MKRIASVKQSLIGLFIFLATMGALLTGCDSDDVGGNLYTKTDKM
                     LGEYLRNDSANYSEFTTLLDTTHVFGLLNSYGSYTCFVPNNQAMLKFYALKGKKSLAD
                     FPMDTLKMIAYDHIINGTVVKYINFVNGRLPVLSMSDRYISIFFSNDGQTFVNKTSQI
                     LGKEIEVHNGVIHPISEVLNPTRFGVVDAISKDSVFSLFYQALVATGMSDSLLLEKDE
                     TYDPTKFAGLITTTKDMGQWFYHEIPTSRKYGYTVLMESNSTLKNQGITDLQSLKDYA
                     ASVYNQVYPLDAGITNITDRRNSLNRFISYHLINKQLSYSKFIDAYDVAHMLKTRDMY
                     EYIETMCPNTLMEVKKDRAMSGANLINYISETGRYVQIVIANSDKDATNGVYHEIDGM
                     LVYDNAVEQELSSKRLRFEAASLFPELTNNNMRGRGTFLVTDPVTQKAIPNLHFQIPR
                     GYISRISSSEQTVVGYLCAYEKFQNYEGDEIFLSASAGKLYDFSVLLPPVPAGTYEVR
                     FGYLTNGKRGVAQLYLDGIPAGVPLNLNTKATDASIGYQFPHTLADDYEGYENDKMMR
                     NRGYMKGPACFKVPKPGWTSGENARYSADNLRKIMGTYTFKSASNHVLTVKGLSGGEF
                     MFDYLEFVPTSALESEDIY"
     gene            complement(6528..>6857)
                     /locus_tag="VI413_11695"
     CDS             complement(6528..>6857)
                     /locus_tag="VI413_11695"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6915331.1"
                     /translation="YLRSNVEQDSLRMSNYTESEYEKLVLRERQRELLFEGKRWFDLV
                     RMARRQKSTSEMNDYIDHKAVGNSTSLGVPVLDAMYMPISRGELEANPKLEQNPYYQE
                     SKSTTVK"
BASE COUNT         2095 a         1392 c         1145 g         2225 t
ORIGIN      
        1 tggttgctga agtcttttcc tgcttccaac tgacttctga aatagttgta tacatcgttt
       61 ccataagagt aagtgaaaat agtatttagt gtgaagcgtt tatacgagaa tttattggtt
      121 attgtaccat aaaaatccgg atttggatta ccaataattt gcttgtcatt ttcatctata
      181 atgccgtctt gaactttatc ttcgaaaatt acatcgccgg caccaaattg agaaatagtt
      241 ccatcagcat ttttcattgt caaaccagca gcatcagcct ccgcctgagt tgaaaacaca
      301 cccatggttt tgtagccgta aaatgatccg gcagattcac caaccttgct aataacttca
      361 ccttcgtata cttgtgtggt aaaagtccct gagttcaatt cagtaatctc gttattgtag
      421 tggcctacgc ttgctcctaa ctcccactta aggtctttaa aattaaacat tttcaggttg
      481 gccgacaatt cgaaaccatg attattcaat ttcccatcat tatcccaata cttcgctaat
      541 ccggaaacaa ttggtaattc tttttgaacc aacaagttgg aagtattact attaaaataa
      601 tcgaacgaaa cagaaagacg gttatcaagt aaactcacat cgattcctgc attaagcttt
      661 ccagttgttt cccattggat acttgtattt tcgagatttg agataactaa accattggcc
      721 ttatccatgt aacgagttga caagaaataa gccatcgact ggtaatcaag cattccatca
      781 tttccactaa ctccgaatcc tgcacgaact ttacaaaaat cgatcagttg ctgattccgc
      841 atgaaatctt ctgacgaaac tatccaagct gcattaatag aagggaaaac accccaacta
      901 cgtccaaata attgaaaacc atcagctgtt ttagttccga aacgcgaaga tccatctata
      961 gctgcagttg cactaagaaa atatttattt ccaaaattat agtcgacact ggcataattc
     1021 gagattgatt tagtccagtt atttaaacca taagcttgtt taaaatcacg cgtaccggtt
     1081 atggtagtat tcaggtttaa tttagtatta tgttcttcaa catagtccga ttcaaaataa
     1141 ttagcaatat atcgccaacc aagtaaagcc ttaatatgat tactcttgtc aatatttttt
     1201 tcaaaagtca atcgggtgtc atcaaaaatt gcctgattac gaataacctg attattaatc
     1261 atattattag agactccttg atccggaatg atacgtgaag cagtaaaacc taccggaata
     1321 aaccgtcctt cagtagttct cgttaaattg taatccactt gtgaactcag ggttaattca
     1381 ggagtaattt ttatacttgg taaaatccct agattaaatc tgtttttaat aagcttgctc
     1441 tgttcatatt taagcatacc acctgggtta ccaataccaa attcatcggc attggcataa
     1501 tcatatgtca actctcccgt acttgtgtaa ttatatggac ttaagaaagg agccttagtt
     1561 atgcttgccc aggtaggcga gtaatactta tcaacaccat catccaccaa tgaccgttca
     1621 atgcgtgaat aaccgatatt taaacccaaa tcgaatattg tattcatttt cacgtcagca
     1681 tttagacgta tagaataacg ttgcatatcg gtagttttaa ccacaccttt attattggta
     1741 tgtcctaatg aaaaatagta cttagcttta tcgtcgccac catcggcatt gataatgtaa
     1801 ttatttgttg ctccaagttg atatacttca tccgcccaat cagaattgtt gtggttggat
     1861 ttgtacgttt ttatatttgc cgggttagtt tccagaaaac cataatcaga tacgtcgttg
     1921 cccactgcac ttttactgtt caacatatca ctggcataaa ccctgaattg ttcacctgac
     1981 atcataggga tactcgaagg agctgtggta acacctgtaa agatattgag accaattttg
     2041 gttacttcag atgtgcttcg ttttgtttta ataagcacaa ctccgttagt ggctttactt
     2101 ccataaattc ctgtaccatc ttttacgacc gaaatacttt cgatatcact catttcaatc
     2161 acatccaaag gattagagaa aaaaccaaga tggatagaag acacatctga aaagctgttc
     2221 caaataacac catcaaccac aaacagaggc tgggcatttg catttaatga gtttatacca
     2281 cgtataaaca gggaagaacc gattcccgcc actgccgaac gattaacagc tctggcatcg
     2341 gcaccaagtt cggtttgaat tagttcatcg attgttattg ctgatgaatt tttaatatta
     2401 tcaatgctct ttgtcgctga tgtcatagcc gaattatcga tcgttccgtt tatgccattg
     2461 acttttctga aatagttgct aaattggtcg gaatatagtt ttaccacaat cgagtctttt
     2521 gatcttacgg caatttctgt tggattatag tcgtaagcag acacaacaag taccacatta
     2581 cgggcgcttg ctttcaggct gaatctgcct ttatcatcag taatagcgga cgcacttttg
     2641 tcggcgacag ttatttgtgc agctgccaca ggcttcttgg agtgtgcatc caatacatac
     2701 cctgaaaata cgtgttgaga tttttcggtt gccttatttt gtgccataac cgaaggtgaa
     2761 aataataaca ccatcaacaa cgccgtaatg catcgatgtt taaaactgat tggcatcttg
     2821 ttcgtgtaca atatcgttaa attattcttc attttcatac gtaaataatt gtttttttac
     2881 tggtcgatag aaattgggct cgaatactga gggcatttct aactaattaa tttttcaatt
     2941 caacactatt gaacaggttt aagaattata cagtcgatac gtaaatttct attataggac
     3001 acttgttcta aagctgtttt aggagttgca ttctcaactt ttaatactac tgaaatgttt
     3061 ttggggaaat cttgtgatct ccaatccaac aagttagcat atgggaactg aaaattttct
     3121 gcaaccagca tttcatcaac tgcatttgga tttgtaatat aagtagcagc ggtgcttgta
     3181 ggtgtcagaa ctttgtgatt agcatctacc gccgcaaaat tcacctgagc tttaacatta
     3241 ttaacatatg acaaataaaa tttcacttta aatggacgcg tgtcattcgc atcgacgatt
     3301 ttagtcggta caaacacgca gtaaatatta tattttcctg ataaagttcc gggcaacgga
     3361 aaggtcacag ctagttttga taaactgctt aacgaagcat ctgtgagtcc gagatacgat
     3421 ttacgagaaa cgctaaatga tgtgccaacg ctcgacaaac ggcttgctgt atagtttgtc
     3481 gtaattcgcc cccaataagt atcttcagct tcaatacgaa tatcctttag ccatgtctct
     3541 ttgggatcag ctttcaactg acttgttacg taacttagtc cgttactcat ttcgtacatc
     3601 tgggctccat caaacaaacg ggttggattc ttaaatttat tcataaaata agttgaataa
     3661 attgagtcct tgggctgggc agtataatac tttccattga aaaacaaatc attaatgatt
     3721 gctttccgtg tattacttac ctgtgctttt attccaccat ctttaggcaa catattgaaa
     3781 tacgtaaacg cctgatcata agcagttttc cacgcattat tatcaggcaa aatagctgtg
     3841 tataagctgt cctcaacttt taagtgtgct atggtatcaa gtatataatt agtttcttta
     3901 taaacggagt caacaaacac accttcttta aagctacctt ccaagtcgaa agttttgtag
     3961 gttaccgatt tcataaatgc cctgattgaa tccaatccat ctgtttcatt tataaattcc
     4021 catatatttt tcatgtaagg tgcgtattgc cccaacacat gaattatacc atttgacatg
     4081 gccaaatccg gctctacaat aagtttatct ccaaatgtat atccatttga acctttagca
     4141 aaaactatta gttttttatt aaacatcaat attattttgc ttgtcactcc cgacgtaggg
     4201 tacgaaaaac gggtaatatg gttattcacc agtttcttca ccaaaacagt atctgacaaa
     4261 tcaaccccgg caagcgcatc attagttgga gcccaaactg tgtacgtttg agtttttgta
     4321 agaatgctgt cataaccaac aattttaagc atatccctga atttactcaa atcatcacgg
     4381 gattcaatgt attgatataa attcaaatcg cttctggtta ttaccttcga attataatga
     4441 ttttcccatt catctttgca ggaaactgac aatgtaatca ttgccaataa tgcaaaaaat
     4501 ggaattccga acttttttaa tttcataata tattattatt taatgcttta caacaggtaa
     4561 tatcaataaa tatcttcact ttctaatgca ctggtaggta caaattccaa atagtcgaac
     4621 ataaactcac caccacttaa ccctttgaca gtaagcacat ggttacttgc acttttaaag
     4681 gtataagtac ccataatttt ccgcaaatta tctgcactat atctggcatt ttctccggaa
     4741 gtccaacccg gttttggaac tttaaaacaa gccggacctt tcatatatcc ccggttacgc
     4801 atcattttgt cattttcata cccttcataa tcatctgcaa gagtatgtgg aaactgataa
     4861 ccaatagaag catcggttgc cttagtgttc aggtttaatg gcaccccggc tgggattccg
     4921 tccagataaa gttgagctac accacgtttt ccatttgtga ggtacccaaa ccggacttca
     4981 tacgtaccag caggcacagg tggaagtaag actgagaaat catatagttt tcctgcagaa
     5041 gcgctaagga aaatctcatc accttcatag ttttgaaact tctcgtaggc acacaaataa
     5101 ccaacaaccg tttgctctga tgaagaaatg cggctaatat atccacgtgg tatctgaaaa
     5161 tgtaaatttg gaatagcttt ttgagttacc gggtcagtaa ccagaaaagt tccacgtcca
     5221 cgcatattat tgtttgtcaa ttcagggaaa agacttgcag cttcaaaacg caatcgctta
     5281 ctagacaatt cctgctctac agcattgtcg taaacgagca ttccatcaat ttcatgatat
     5341 acaccatttg tagcatcttt atcggaattt gcaattacaa tttggacgta tctgccagtt
     5401 tcgctaatat aattaataag attagcgcca ctcatagctc tgtccttttt cacctccatt
     5461 aacgtatttg ggcacatggt ttcgatatat tcatacatat cgcgtgtttt cagcatatgg
     5521 gcaacatcat aagcatcaat aaattttgaa tagcttaact gcttgtttat caaatgatat
     5581 gaaataaaac gatttaaact gttacgtcta tctgtgatat ttgtgattcc ggcatctagt
     5641 ggatatacct gattgtaaac actagctgca taatccttga gactttgtaa atcagtaatc
     5701 ccctgatttt ttaatgttga attactttcc atcaacacag tatatccgta tttacgtgat
     5761 gttggtattt catgataaaa ccactgcccc atatcttttg tggttgtaat caaaccggca
     5821 aatttcgtag gatcatatgt ttcgtctttt tcgagcaaca aagaatcact catacctgta
     5881 gcaaccaaag cctggtaaaa cagactgaaa acactgtctt ttgaaattgc atcaacaaca
     5941 ccaaagcggg ttgggttaag cacttcgcta atagggtgaa taactccgtt gtgtacttca
     6001 atttcttttc ccagaatttg cgatgtttta tttacaaaag tctgaccgtc atttgagaaa
     6061 aagatagata tatagcggtc gctcattgac aaaacaggga ggcgtccatt cacaaagttg
     6121 atatatttta cgactgtacc attaattata tggtcataag ctatcatctt caaagtatcc
     6181 attggaaagt cggcaagcga tttttttcct ttcaaggcat aaaacttcaa catagcctga
     6241 ttgtttggta caaagcaagt atatgagcca tacgaattaa gcaacccaaa tacatgcgta
     6301 gtatccagca atgtagtaaa ctctgaatag ttagcagaat catttcgcaa atactctccc
     6361 agcattttgt cggttttagt gtataaatta ccgccaacat catctgagtc acatccggta
     6421 agaagtgcac ccattgttgc caaaaatatg aataagccaa tcaatgattg cttaacagaa
     6481 gcaattcttt tcatatattt tttcatttta atcataattt ttaaaggtta cttaacggtt
     6541 gtgctttttg attcctggta atatggattc tgctccaatt tagggtttgc ctccaactca
     6601 ccacgcgaaa ttggcatata catggcatcc aacaccggta cgcccaatga tgtggagtta
     6661 cctactgctt tgtgatctat gtaatcgttc atttcagaag ttgacttctg acggcgagcc
     6721 attctaacta agtcgaacca acgtttacct tcaaacaata attcgcgttg gcgttcacgc
     6781 aacaccaatt tttcgtattc tgattcagta taattactca ttcgtagtga atcctgttct
     6841 acatttgatc gtaaata
//
LOCUS       DATDNM010000691         2672 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_82501, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000691 DATDNM010000000
VERSION     DATDNM010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82501"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..745)
                     /locus_tag="VI413_11700"
     CDS             complement(<1..745)
                     /locus_tag="VI413_11700"
                     /inference="COORDINATES: protein motif:HMM:NF015585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HEY6915332.1"
                     /translation="MKKLVSLFIIIFSTSFLSQVKASSDPNFHIYICFGQSNMEGNAA
                     IGTADKTGVNSRFQVMTVAPDDYQHLKRSVGNWYTALPPLCRWDTGLTPADYFGRTLT
                     DSLPDSVKVGVIVVAMGGSGIDAFDKNNYVDYYKNADAWQKSLMNIYGGNPYAKIIEM
                     AKIAQQSGVVKGILLHQGESNNMQADWPQKVQKIYNNMLADLSIEPNSIPLLAGEMLQ
                     QDQGGICWGMNGIIAKLPYYIPNSYPISSK"
     gene            complement(780..1328)
                     /locus_tag="VI413_11705"
     CDS             complement(780..1328)
                     /locus_tag="VI413_11705"
                     /inference="COORDINATES: protein motif:HMM:NF025862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 97 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6915333.1"
                     /translation="MQPEFTTTAPEHNTILPFTRNVVGSMDYTPVTFTNSQFPHITSY
                     GHELALSVVFESGIQHFADRPEGYYTLPDAARAFLKEVPNVWDNTKLLDGYPGKYIII
                     ARQKGNEWYIGGISADNMREKSMKLEFGFLPEGVKYKLTLITDGKHDKEFSTQYLVVD
                     KSATLDVKILRRGGFVASLKQI"
     gene            complement(1507..>2672)
                     /locus_tag="VI413_11710"
     CDS             complement(1507..>2672)
                     /locus_tag="VI413_11710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007211447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 27 protein"
                     /protein_id="HEY6915334.1"
                     /translation="NEVSADKVKRAANALVNSGLINHGWSYINVDDFWENNRDSKDPS
                     LRGKFRDEAGYIIPNVRFGDMKALADYVHGLGLKIGLYSSPGPWTCGGCAGSFGYERQ
                     DAESYAKWGFDYLKYDWCSYGNVINGLPENDPNKVSSLSYNGGNELSTAIKPYKIMGD
                     YLRQQPRDIVYSLCQYGMSDVWKWGDSVSGNCWRTTNDITDTWASVKSIALDQEKSAA
                     WAKPGNWNDPDMLVVGTVGWGNPHKSKLRPDEQYLHISLWSLFSAPLLIGCDMEKLDD
                     FTYNLLTNDEVIDVNQDPLGKQATCVQTIGELRIYVKELEDGSRAVGFCNFGLEAVDM
                     QYQDFEKLGLTGVQHARDLWRQKDINTITTGKDSLSVKIPAHGVLLYKFSIVK"
BASE COUNT          733 a          605 c          493 g          841 t
ORIGIN      
        1 cttttgagga aatagggtat gagttgggga tataatatgg caattttgct ataattccgt
       61 tcattcccca acaaattccg ccctgatctt gctgtaacat ttcaccggca agcaatggaa
      121 tggaattcgg ttcaatactt aagtcagcga gcatgttgtt gtaaattttc tgtacctttt
      181 gcggccagtc ggcttgcatg ttatttgatt ctccctgatg tagcaatatt cctttaacta
      241 cacctgattg ttgagcaatt tttgccattt caatgatttt ggcgtaggga ttaccgccat
      301 atatattcat caaacttttc tgccaagcgt cagcattctt ataataatct acgtaattgt
      361 ttttgtcgaa tgcatctatg ccactgccac ccatggcaac gactattaca cctactttca
      421 cgctatctgg aagactgtct gtcaatgtcc gtccaaaata atcggcagga gtaagccctg
      481 tatcccaacg acataaaggt ggtagcgctg tgtaccagtt gcctaccgat ctttttaggt
      541 gttgataatc atccggtgca actgtcatta cctgaaaacg gctattaaca cctgtcttgt
      601 cggcagttcc aatcgctgca tttccctcca tatttgactg tccgaaacag atgtaaatat
      661 ggaaatttgg gtctgaggaa gctttcacct gagacaagaa agatgttgaa aatatgatta
      721 taaacaatga aactaacttt ttcatttttc ttacagatat tgatttcata ttatttttat
      781 taaatttgtt ttaaacttgc aacaaaacct ccacgtctca gtattttcac atccagtgtt
      841 gctgatttat ccaccaccaa atattgcgta gagaactctt tatcgtgctt gccatcggtt
      901 atcaaagtaa gtttgtactt cactccttct ggcagaaaac cgaattccag tttcatactc
      961 ttttcccgca tgttgtcagc actgattcct ccgatatacc attcgttgcc tttttggcgg
     1021 gcaataatga tgtatttgcc cggatagcca tcaagtagtt ttgtattgtc ccacacattt
     1081 ggtacttctt tcaggaatgc ccgggcagca tcgggtagcg tgtaatatcc ttcgggcctg
     1141 tcggcaaaat gctggattcc ggattcaaag acaacactca aagccagttc gtgaccatag
     1201 gacgtgatgt gcggaaactg agaattggta aatgttaccg gcgtataatc cattgaaccc
     1261 accacattgc gggtgaaagg caaaatggta ttatgctcgg gtgctgtggt ggtgaattcc
     1321 ggttgtattt gataatttca tttacgtgta ttatttgtga tttggctgca caagcagata
     1381 actatctgca tccttattgt aaaggacttt gtgcacactc atttcatgat tagattaaaa
     1441 aaaatgacaa atataaaatt aggagaaatg tgggtttaag taatttctcc taattttgag
     1501 attcaattat tttacgattg aaaatttata aagaagcact ccatgagccg gtatttttac
     1561 cgaaagagaa tctttacccg tagttatcgt gttaatatct ttttgcctcc agagatcccg
     1621 agcatgttga actccggtta accctaattt ttcgaagtct tgatattgca tatctacagc
     1681 ctccaatccg aaattacaaa atcctaccgc acgacttcca tcttcgagct ctttcacata
     1741 aatgcgtaac tctccgatgg tttgcacgca tgtagcctgt ttgcctaacg gatcctgatt
     1801 tacatcaata acttcgtcat tggtcagtaa attataagtg aaatcatcga gtttttccat
     1861 atcgcaaccg attagcaacg gtgccgaaaa aagactccac aaactaatat gcagatattg
     1921 ttcatcgggc cttagcttgc ttttgtgagg atttccccag cctactgtgc ccacaaccaa
     1981 catatcaggg tcattccagt taccgggttt agcccatgct gccgattttt cctgatcgag
     2041 cgcaatgctt tttacgcttg cccaggtatc agtaatatcg ttagttgttc gccagcagtt
     2101 accgcttacc gaatcgcccc atttccatac atccgacata ccgtattggc acaaactgta
     2161 cacaatgtcg cggggttgct gacgaaggta atcacccata attttatacg gttttatggc
     2221 agtacttaat tcatttcctc cattgtatga taaggaagaa actttattcg ggtcattttc
     2281 gggcaggcca ttgatcacat taccataact acaccagtcg tacttcaaat aatcgaaccc
     2341 ccatttggca taactctcgg catcctgcct ctcgtaacca aaactaccgg cacaaccacc
     2401 acacgtccag ggacctggac tagaataaag acctattttc aatccaagcc catgcacata
     2461 atcagccaat gctttcatat cgccaaatct aacattggga ataatatatc ctgcttcatc
     2521 gcgaaatttg ccacgaagcg aaggatcttt cgaatcgcgg ttgttttccc agaaatcatc
     2581 tacattaata tatgaccaac catgattaat caacccgcta tttaccaatg cattggcagc
     2641 ccgttttact ttgtcggctg aaacttcatt gg
//
LOCUS       DATDNM010000692         2090 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1898715, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000692 DATDNM010000000
VERSION     DATDNM010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1898715"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..978
                     /gene="serC"
                     /locus_tag="VI413_11715"
     CDS             <1..978
                     /gene="serC"
                     /locus_tag="VI413_11715"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEY6915335.1"
                     /translation="GLSILEISHRSKDFQAVMDETVALFKELLDIPQGYSVVFLGGGA
                     SMQFAMVPFNLFEKKAAYLNTGVWASKAMKEAKGFGEVVEVASSKDANYTFIPKDFVI
                     PADADYFHITTNNTIYGTELHVDLDSPVPLVADMSSDIFSRPLDVSKYGIIYGGAQKN
                     LAPAGLAFIIVKDELLGKVSRYIPTMLNYKTHIAEGSMFNTPPVLPIYSAMETLRWLK
                     ANGGLVEMQKKNIAKAELLYNAIDNSKIFVGTAAKEDRSLMNVCFVMKPEYAELEGAF
                     QKFAQAAGMDGIKGHRSVGGFRASIYNAMPIESVQALVDCMNEFEKQNA"
     gene            1031..1951
                     /locus_tag="VI413_11720"
     CDS             1031..1951
                     /locus_tag="VI413_11720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010537837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6915336.1"
                     /translation="MKVLIATDKPFAKVAVNGIRTEVEAAGFELAMLEKYTEKQQLLD
                     AVVDADAIIIRSDIIDAEVIAAAKQLKIVVRAGAGYDNVDLEAATAAGVCVMNTPGQN
                     ANAVAELVFGLLVFAVRNFYNGTSGTELMGKKLGIHAYGNVGRNVARIAKGFGMELYA
                     FDAFCPAEVIEKDGVKAVSSVEELYTVSDIVSLHIPATAETKQSINAELLGLMPKGGV
                     LVNTARKEVINEAEILAFMESHPDFKYVTDIVPGNDAQMKEKIGDRYFTTPKKMGAQT
                     SEANINAGIAAAKQIVDFIKNGNDCFRVNK"
BASE COUNT          638 a          344 c          465 g          643 t
ORIGIN      
        1 ggattatcta ttttggaaat cagccaccgc tcaaaagatt ttcaggcagt aatggacgaa
       61 acagttgctc ttttcaaaga attgttggat attccgcaag gttattcggt agttttcctg
      121 ggaggtggtg cgagcatgca atttgctatg gttccattta atctttttga gaaaaaagca
      181 gcctatttaa atacaggtgt ttgggcaagc aaagccatga aagaagctaa aggttttggc
      241 gaagtggtag aagttgcttc atcgaaagac gctaactata ctttcatacc taaagatttt
      301 gtgattcctg ctgatgcgga ttatttccat atcactacaa ataatacgat ttacggaact
      361 gaattgcacg tggatttaga ttcacctgtg ccattggtgg ccgatatgtc ttctgatatt
      421 ttctcacgtc cgttggatgt ttctaaatat ggtattatct acggtggtgc ccaaaagaac
      481 cttgcacctg ccggtttggc attcataatt gtaaaagacg aattacttgg aaaagtatcc
      541 cgttacattc caaccatgtt gaactacaaa acgcatattg ctgaaggatc aatgtttaac
      601 acacctccgg tattgcctat ctacagtgct atggaaacat tgcgttggtt gaaagctaac
      661 ggtggtttgg tagaaatgca aaagaaaaac attgcaaaag cagaattact ttacaatgct
      721 attgataaca gtaaaatatt tgttggaaca gctgctaaag aagatcgttc gttgatgaac
      781 gtttgctttg taatgaaacc tgaatatgcc gaattagaag gagctttcca gaaatttgcc
      841 caggctgcag gaatggatgg aattaaaggt caccgttcag ttggtggttt ccgcgcttct
      901 atttataatg ccatgccgat tgaaagtgtc caggcacttg ttgactgcat gaatgaattt
      961 gaaaaacaaa acgcataaaa taatctgaca ataggcactt tagtgcctat tgttttttaa
     1021 acacatatct atgaaagttt taatagctac tgataaaccg tttgcaaaag ttgcagttaa
     1081 cggaattcgt acagaagttg aagcagccgg ttttgaattg gcgatgctcg aaaaatatac
     1141 tgaaaaacaa caattgcttg atgctgttgt ggatgctgat gcaattatta ttcgcagcga
     1201 cataattgat gcggaagtaa ttgccgctgc taaacaattg aaaattgttg ttcgtgccgg
     1261 agccggttac gataatgtgg atttggaagc tgctacggct gccggagttt gtgtcatgaa
     1321 tactccgggt caaaatgcta atgctgttgc tgaattggtt ttcggtttgt tggtttttgc
     1381 tgtacgtaat ttctacaacg gaacttccgg gactgaatta atgggcaaga aactgggtat
     1441 tcatgcttac ggaaacgtgg gtcgcaatgt agctcgcatt gcaaaaggtt ttggaatgga
     1501 attgtatgct tttgatgctt tttgtcctgc cgaagttatt gaaaaagatg gagtaaaagc
     1561 agtatcttcg gttgaagaat tgtatactgt ttcagatatc gtttcgctgc atatccctgc
     1621 taccgcagag accaaacaat cgatcaatgc agaattgctt ggattaatgc ctaaaggtgg
     1681 tgtgttggta aatacagccc gtaaagaggt aatcaatgag gctgaaatac ttgcatttat
     1741 ggaatcacac cctgatttca aatatgtaac tgatatcgta cctggtaatg atgcccaaat
     1801 gaaagaaaaa ataggtgatc gttatttcac aacccctaag aaaatgggtg cccagacttc
     1861 ggaagcaaat ataaatgccg gaattgctgc agctaaacag atagttgatt ttatcaaaaa
     1921 cggaaacgat tgtttcagag tgaataaata acggagaata tctgttatta tagtaacggc
     1981 ctcaaaatct tgtattttga ggccgttttg tattttgact tggtattgtg attttgaatc
     2041 tttaagtgtt caatatatgc cattaataat gggtagtaaa aaaagctaaa
//
LOCUS       DATDNM010000693         5687 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1685594, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000693 DATDNM010000000
VERSION     DATDNM010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5687
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1685594"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..370
                     /locus_tag="VI413_11725"
     CDS             <1..370
                     /locus_tag="VI413_11725"
                     /inference="COORDINATES: protein motif:HMM:NF024487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AAA domain-containing protein"
                     /protein_id="HEY6915337.1"
                     /translation="IQKAVESLKIQNKNDFIILTPYKKQIRLLNNYLPQERNELKILT
                     VHGSQGREWETVIFSVVDTSDKWFVDSKIIKSKGLNLVNTAVSRAKKQLIIVCDKDYW
                     MNQNGQLITDLLRNGTEIQK"
     gene            491..2140
                     /locus_tag="VI413_11730"
     CDS             491..2140
                     /locus_tag="VI413_11730"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEY6915338.1"
                     /translation="MDIRSKTNEQLKEELRQSEPQQNESLPVLKKYNTDFWLNTVVRV
                     CAFVTAFIGLFVLLGWALGFNDVTSLGKRFVPMAEETAFLFLLTGIALVLISQKTRNK
                     LLHGILIVFAVFIGVIALLTLIDSTTGYRWNISDIFGRTNTLKAGIVTGKMSWLTALC
                     FVFVSVALLLLPTTAKKYSVVFSSLGLFVGYIIVVGYSYGVPVLYGGTTIPMAWPTAI
                     AFIFSCAGLLFAAGKETAPLRYLTGYSTRARLLRNILPLVFLITVAHDFVDAFINETY
                     NTVNSVTNSTVDVIVLIVVGVIISMKSKSIGDSIDKNISERKQAEEALKESKEQLRNF
                     ASNLQLVREDERTNLAREIHDSLAQYMVALKMDIGMYKKKLSKANEAIPAAEVIVEMD
                     KLIVQVDNANKTARMIMNGLRPEQLELLGFVAAAEVHINDFMETHHINCLFKNETREL
                     IIDKEPALALFRILQESFNNVLKHSMANHITVTLASLNGNLKMEIVDDGVGFDVNHNG
                     RTDSYGIVGMKERANLLGGNFEITSKVGKGTKVRVEIPYPH"
     gene            2525..3406
                     /locus_tag="VI413_11735"
     CDS             2525..3406
                     /locus_tag="VI413_11735"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEY6915339.1"
                     /translation="MDTNVEKMVITVETVIHAPVKKVWKLWTDPKHIVNWNYASDDWH
                     TPRAENDLRVGGKFVSRMEAKDGSMGFEFSGVYEKVELHKQLDTLLDDGRKVQVIFVD
                     KGNETSVIESFEAETENSAELQKTGWQAILDNFKKYVEATKTKEVLYFEININASPEK
                     VYKLMLADKTYSEWTSAFNPTSRFEGSWEKGSKILFIGTDEDGKVGGMVSKIRENIPG
                     KYVGIDHIGVIHGNEEITTGPEVDEWAGVSENYTFAESNGSTLLTVDMGTNEEFEAYF
                     LETYPKALDALKAICER"
     gene            3844..4929
                     /gene="dinB"
                     /locus_tag="VI413_11740"
     CDS             3844..4929
                     /gene="dinB"
                     /locus_tag="VI413_11740"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEY6915340.1"
                     /translation="MRKIIHIDMDAFFASIEQRDNPDYRGKPLAVGYSGARGVVAAAS
                     YEARRYGVRSAMASKIALRKCPHLIFVMPRFEVYKSVSRQIMDIFHEYTDLVEPLSLD
                     EAFLDVTENHKQIASATQIAQEIKQKIFDTVGLTASAGVSFNKFLAKIASDYNKPNGI
                     FVVKPGAAEKFVETLAIEQFYGVGRVTAERMHSLGIRTGADLKQWTEQDLVTHFGKAG
                     HIYYQNARAIDERPVESQRVRKSVSFETTFGNDMDTIEELSPELEKLAKEVIEYTTRK
                     NFKGRTVSLKIKYADFKVITRSKTFPGHVTDYETLYNTGLELLEAVDLSPKVRLIGIG
                     IKNIDEEAGWSDAIQLRIKFIEDELAE"
     gene            5023..5523
                     /locus_tag="VI413_11745"
     CDS             5023..5523
                     /locus_tag="VI413_11745"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HEY6915341.1"
                     /translation="MKKLMTSTLLLLVTLLPGYSFGQNSFSKADSLAIKKASHAFEVA
                     FNTHDAKALANLFLPNGEFTNVVGATATGRKAIEEFHAPMFAGNPGYFSFKYSTLKNE
                     VPKITVIKPDVASVDILWTMDKCFLPDGTESKNRRGLITLLMVRKNDQWGIRIMHNVE
                     LPPMSN"
BASE COUNT         1788 a         1042 c         1297 g         1560 t
ORIGIN      
        1 aattcagaaa gcggttgaaa gtctaaaaat ccagaataaa aatgatttta taattttgac
       61 accttacaaa aaacagataa gacttttaaa caattactta ccacaagaaa gaaatgaatt
      121 aaaaattcta actgtacacg gatcacaagg gagagaatgg gaaacagtta tttttagcgt
      181 tgttgataca tccgacaaat ggtttgttga ctcaaaaatc atcaaatcaa aaggtctaaa
      241 cctagtaaat acagctgtaa gtagagcaaa aaagcaactt ataatagttt gcgataaaga
      301 ttattggatg aatcaaaatg gtcaacttat tactgacctt ttaagaaatg gaacagaaat
      361 tcaaaaatag acataaagca ccgcacgctg tcgcaggttt gtaaactctg ccaataccca
      421 atcagagaaa tagtacgggc aaagagccga gccagatggt agacaacaca gatcattaaa
      481 acacgtttct atggatattc gaagcaaaac caacgaacaa ctcaaagaag agttacggca
      541 atcggagcca cagcagaatg aaagtttgcc tgttttgaag aaatacaaca cggatttctg
      601 gctgaacacg gttgtgcggg tatgtgcttt tgttactgca tttatcggat tgttcgtttt
      661 gctgggctgg gcattgggat ttaatgatgt aaccagtttg ggtaaaaggt tcgtccccat
      721 ggctgaagaa acggctttct tgtttttact taccggcatt gcccttgtgt taatctcaca
      781 aaaaacaaga aacaaattgc tgcatggcat tcttatcgtt tttgcagttt ttatcggcgt
      841 tattgcgcta cttacactta ttgactcaac taccggctac aggtggaaca ttagtgatat
      901 ttttggtaga actaatacgt taaaagcagg aatagtaacc ggaaaaatgt cgtggctgac
      961 ggcactttgt ttcgtttttg tcagcgttgc ccttttatta cttcccacaa cagcgaaaaa
     1021 gtattcggtt gtctttagct cgttgggtct ttttgtggga tatataattg ttgttggcta
     1081 ctcgtatggc gttccggtgc tatatggagg aacaaccata cctatggcct ggcctactgc
     1141 aattgcattt atcttttcgt gtgcaggcct gctgtttgcc gccggcaaag aaaccgctcc
     1201 gctccgttat ttaacgggat actccaccag agcccgcctc cttcgcaaca tcttaccact
     1261 ggtttttctg ataacggtag cgcatgattt tgtcgatgca tttatcaatg aaacttacaa
     1321 cacggtcaat tccgtaacca acagtacggt tgatgttatt gtattgattg tggttggtgt
     1381 cattatttca atgaagtcga aatccattgg tgactccatt gacaaaaata tttccgaacg
     1441 caaacaagcg gaagaagctt taaaagagtc aaaagaacag ttgagaaatt ttgcatcgaa
     1501 tctgcaactg gtacgtgagg atgaaagaac aaatttagca cgcgaaatac acgatagcct
     1561 ggcgcagtat atggtggctc tgaaaatgga cattggcatg tataagaaaa aattatcgaa
     1621 agcaaatgaa gccattccag ccgcagaagt catagtcgaa atggataaac ttattgtaca
     1681 agtagacaat gccaataaaa cggcccggat gataatgaat ggcttacgac ccgaacaact
     1741 tgagttgctt ggttttgtgg cggctgcaga ggtgcatatc aatgacttta tggaaacaca
     1801 ccatataaac tgcctgttta aaaatgaaac ccgggagctg attattgata aagaaccggc
     1861 tctggcttta ttcaggatac tacaggaatc attcaacaat gttcttaaac actcaatggc
     1921 taaccacata actgttacgt tagcgagttt gaacggaaat ttaaagatgg aaatagtaga
     1981 tgacggcgtc gggtttgatg taaatcacaa tggcagaacc gattcttacg gtattgttgg
     2041 catgaaagaa cgggcaaatt tattgggtgg taattttgag attacgagta aagttggtaa
     2101 aggaacaaag gtaagggtgg aaatacctta tccacattga gatatataac acgcaatgga
     2161 tcatgcttgt aagctgcgtc aaaatccaat cagagaaaca atactgatca ctgatcctag
     2221 ccaatgacga ggactcaaac gggttttgta gcttgtgcca aaatacctaa caggttttat
     2281 aaacctgtta ggtaaatgta acagtgacag gtcgcgacct gtcactacgc agattgatac
     2341 taacttcttt ttgcttcatt cctttcgata taaatgatca ggtataaaat cgaatagaac
     2401 tttcgccgaa aaggtttgtt taataattca tatcacaaat atgttttaat caattttttg
     2461 ttggttaaga tattggaaat gtgtatttta aactaaattg gattatttga aaatcaaaaa
     2521 cattatggat acaaatgtag aaaaaatggt cattaccgtt gaaactgtta ttcacgctcc
     2581 tgtgaaaaaa gtgtggaaat tatggacaga tccgaaacat attgtaaatt ggaattatgc
     2641 ttccgatgat tggcatacgc cccgagcaga aaacgatttg cgtgttggcg gaaaattcgt
     2701 ttcgcgtatg gaagctaagg atggcagcat gggcttcgaa ttttcagggg tgtacgaaaa
     2761 ggtggagttg cacaaacaac tagatacact tctcgacgat ggaagaaaag tgcaggtgat
     2821 atttgttgat aaaggcaatg aaacttcggt aattgaaagc tttgaagcag aaaccgaaaa
     2881 ctctgcagaa ttgcaaaaaa caggttggca ggcaattctg gataacttca aaaaatatgt
     2941 tgaagcaaca aagaccaagg aggtgttgta ttttgaaatc aacataaacg ccagcccgga
     3001 aaaggtttat aagttgatgc ttgccgataa aacctattcg gaatggacat ctgcttttaa
     3061 tccgacatcc cgttttgaag gttcgtggga aaaaggttcg aagattctgt ttattggaac
     3121 cgatgaggac ggaaaagtgg gcggcatggt tagcaaaatc agggaaaaca tcccaggcaa
     3181 atacgttggt atcgatcata taggagtgat tcacggcaat gaagaaataa ccactggtcc
     3241 ggaggtggat gagtgggccg gtgtttcgga aaattatacc tttgctgaaa gcaatggaag
     3301 taccttactt acagtagata tgggtacgaa tgaggaattt gaagcgtact ttctggaaac
     3361 ttatcccaaa gcacttgacg ccctgaaagc tatttgtgaa aggtaacgga gacgccaatt
     3421 ccctaaacgg ggcttgagaa tgctaaaaaa tggcttgagg ttattatatt gattatccgc
     3481 ataatgactt aatcttattt acaatagggg cttccgcccc ttgacccgac ttactttttg
     3541 tcttgacaca aaaagtaagc aaaaaagtca agactgcgcc cgcttcactc gaaaaactgg
     3601 cattcagttg gctgaaaccg tccaaactcg ctccttcgtc gctcaaacag gactgtttct
     3661 aacgccaact tcactggttt ttcggttcac cggacgaggt tagtcaattg agagactttg
     3721 ataattaagc aggtcacttt gcggataatc attttatata tcattgacaa tgtcttaaag
     3781 cccccatttg gggttggggt caacgctaat tcattgaata ctcagataac agcccgttga
     3841 gctatgcgta aaataattca tattgatatg gatgcctttt ttgcttccat agagcaacgg
     3901 gacaaccctg attacagggg taaaccgttg gctgtgggct attcgggtgc gcgtggcgtg
     3961 gtggcagccg ccagttacga agcgcggcgg tatggagtgc ggtcggctat ggcatcaaaa
     4021 attgcgctac gaaagtgccc gcacctgata ttcgttatgc cccgctttga ggtttacaag
     4081 tcggtatcgc ggcaaatcat ggatattttt cacgaatata ccgatttggt tgagccgctg
     4141 tcgttggatg aagcttttct ggatgtgacc gagaaccata aacagatagc ttcggccaca
     4201 caaatagcac aggagattaa gcagaagata ttcgatacgg tggggctgac ggcttcggcg
     4261 ggagtttcgt tcaataagtt tctggccaag atagcttcgg attacaacaa gcctaatggc
     4321 atatttgtgg tgaaaccggg ggctgccgaa aaatttgtgg aaacacttgc tatagagcaa
     4381 ttttacggag ttggtagggt tacagcagaa cgaatgcaca gtctcggcat caggaccgga
     4441 gccgatttga agcaatggac tgaacaagat ttggttactc attttggcaa agccgggcat
     4501 atttattacc agaatgcaag ggcaattgac gaaaggccgg tggaatcgca gcgggtgcgg
     4561 aaatcggtga gcttcgaaac tacttttggg aatgatatgg atactataga ggaattatcc
     4621 cctgaattgg aaaagttggc aaaagaggtg attgaatata caacacgaaa aaactttaaa
     4681 gggcgcactg taagcctgaa aataaaatat gccgatttta aagttattac ccgaagcaaa
     4741 acatttcccg gccatgtaac tgactatgaa accttgtaca atactgggct ggagttactg
     4801 gaagcggttg atttgtcacc caaagtccgg ttgataggca taggtatcaa gaatattgat
     4861 gaagaggccg gctggtcgga tgccattcaa ctacgcatta agtttataga agatgagtta
     4921 gcggagtaat ggcagaatca tttagcctgt tcaaacaata ggggcaaata taatgttttg
     4981 tgatgatatg aatcaagttt aattctatct aaaccaaaca ttatgaaaaa gttaatgaca
     5041 tcgaccttgc tactgctggt gactctgtta cccggttatt cttttggaca aaactctttc
     5101 tccaaagcag attcactagc cataaaaaag gcgtcgcacg cttttgaagt ggcttttaat
     5161 acccatgacg ccaaagccct ggccaacctt ttccttccaa acggtgaatt taccaatgtg
     5221 gttggtgcca ctgcaaccgg taggaaagca attgaagagt tccatgcacc tatgtttgca
     5281 ggcaaccccg gctatttctc ttttaagtat tcaacactga aaaatgaagt tccaaaaatt
     5341 accgttatta aacctgatgt tgcttccgta gatattttat ggacaatgga taaatgtttt
     5401 ttgccggatg gcacagagtc aaaaaacaga aggggactga taacgttgct tatggtccgg
     5461 aaaaatgatc aatggggaat tcgcattatg cacaatgtag agctacctcc aatgagtaat
     5521 tagtgtaagc cggacgtagg tttgttcccc agactcagat tctcgctata attatcgaga
     5581 ataagacgtt taggggcaat gccgggtaat aataacgcgg aggatttcct gagaaggacg
     5641 gggcattgat aagtaccatg gaagcatact tttcgtcgaa aatgttg
//
LOCUS       DATDNM010000694         4989 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1259482, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000694 DATDNM010000000
VERSION     DATDNM010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4989
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1259482"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1389)
                     /locus_tag="VI413_11750"
     CDS             complement(<1..1389)
                     /locus_tag="VI413_11750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019149457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY6915342.1"
                     /translation="MRKNIAIAILAVVLFTACKNTTQTSEEKRIGEKVDSVMKLMTLE
                     EKIGQMVLYTSDWDVTGPSLKKGYMDEIRKGNCGNIFNAHTAAYTRKLQRIAVEESRL
                     GIPLLFGYDVIHGHKTIFPISLGESASWDLAAIEKSARVSATEAAASGINWTFAPMCD
                     ISVEPRWGRVSEGAGEDPYLGSKIAAARVHGFQGDNLADTLTILACVKHFAAYGAPIA
                     GRDYNTVDMSKRVFFDTYLPPYKAAIDAGAMSVMSSFNEFDGIPASGSHYLLSDILRG
                     QLGFKGFVVTDYTSINEMVNHGVVANENEACMLAAKAGVEMDMQGEVYFKYLKKQVED
                     GEVPMKVVNDAVNRILTVKFMLGLFDDPYRYCNEAREKREIYSPAHLEAAFDVAKKSM
                     VLLKNDNHVLPLRKGEKIAVIGELAASTRDLLGSWKAAGDWNFMKSTLDELKAYNGAT
                     NVVYAEGCKTIGD"
     gene            complement(1597..4461)
                     /locus_tag="VI413_11755"
     CDS             complement(1597..4461)
                     /locus_tag="VI413_11755"
                     /inference="COORDINATES: protein motif:HMM:NF019136.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triple tyrosine motif-containing protein"
                     /protein_id="HEY6915343.1"
                     /translation="MNVLSGKYLLLTLIFISVSTIGQEFTPVVTQFTKKDYNASNQNW
                     SIGQGNNGIMYFGSNQGMLEFDGSMWQIHKMAGNKTVRALLVDKDNRIYVGSFEEFGY
                     FEKDAAGRLSYKSLSSKLRGYSMQNDEIWTILNLDGTIIFQSFTSYFTFKNGEVKGHR
                     CPYTFLFFNSYNHNLFTHTDQYGLSMLNFGKNTVVPVKNEVLKSPVISVLAFDKTRAL
                     LVTKSDGLFLYDGSTFSRFQTNADEEIKRAEINRAVISPDGLILLGTILNGVTAINKQ
                     GIKLWTLNSSNVLQNNTVLGMFCDRDNNLWLALDKGIALLQLNSSIRYIHSFNPSVGA
                     IYSLSYAAPTLFIGTNQGLYTAELSADKKSIRNLKLEPQVKGQVWSVDKFDDQQICGN
                     NEVTFDVSGRGANFLSPVKGGICIKKGYIHGKEVLVQGTYTQLCIYEKVNGKWVFSHA
                     VDNFVNPVRYIEIDYTGTIWASHLHQGLYAIQLAPDLKKIEHIRTYNSLDKKHNYPIN
                     VFSINNRVVFTDNNAFYTYDDIQKKIIPYNELNKSLGYFSRSYRVCHFKADLYWFIHD
                     DESALVQVKPGYTSVLDVVQYALFLNQTVDDYQNIVPISDNECVFTLENGLALYQADK
                     LNRKTAVSTLQLKSIQASDAESKEIVFLPLSSKQTPSTPFKRNNILFTVFFPQYSTLN
                     NIFFRYKLDGLDVVWSEASPSSQKTYNYLPHGQYRLNVEVLTKSGIKLSETSYSFIVE
                     PPFYLSLAAKILYAILIVLSGVGIYLYVQHLFQEKKEKIHREQEDIRRKEIEKREQQI
                     IALQNEKLESELTVKSKELAESTMTIIKKNEILVTIKEEVVNQKNALGSQYPNKYYDK
                     LIRLLDENLSSADDWAIFQTNFDRIHENFFRNLHTNYPELTSNDLRFCAYLRLNLSSK
                     DIAHLMNISLKGVEVGRYRIRKKIGLPSTKSLTEFMIEFK"
BASE COUNT         1384 a         1068 c         1007 g         1530 t
ORIGIN      
        1 atcgcctatc gttttacaac cttcggcata aaccacgtta gtagcaccat tgtaagcttt
       61 caattcatcg agtgtggact tcatgaaatt ccagtcgccg gctgctttcc acgatcctag
      121 caaatcgcgg gtagaagccg caagttcccc gataacagca attttttctc cttttctcaa
      181 tggcagtaca tgattgtcgt ttttcaacag aaccatcgat ttcttggcta cgtcgaaagc
      241 cgcttcaaga tgagcaggag aatatatttc ccttttttcg cgcgcttcgt tgcaatagcg
      301 atatggatcg tcgaacaggc caagcatgaa ttttacagtt aatatgcggt tcacagcatc
      361 attaaccact ttcatgggta cttcgccatc ttctacctgt tttttcaggt atttgaaata
      421 tacttcgccc tgcatatcca tttcaacccc tgcttttgca gctaacatgc aagcttcgtt
      481 ttcatttgca accacaccgt gattcaccat ttcattgata gaagtatagt cggtaactac
      541 aaatcctttg aatcccaact gcccgcgtaa aatatcactt agcagataat gacttccgct
      601 agctggaata ccatcaaatt cattgaaaga ggacatcacg ctcatggcac ctgcatcgat
      661 agcagctttg tatggaggaa gataagtatc gaagaaaacc cgctttgaca tgtccaccgt
      721 gttgtaatca cgtccggcaa tgggagcgcc gtaagcggca aagtgtttta cacaagccag
      781 aatggtcagc gtatcggcca aattgtcgcc ctgaaaacca tgaacgcggg ctgctgcgat
      841 tttagaacca agatacggat cttcgcctgc tccttcggaa acgcggcccc aacgaggctc
      901 aaccgaaata tcgcacatcg gtgcaaaggt ccagttgata ccggatgcgg cagcttcagt
      961 ggctgaaacg cgggctgatt tttcaatagc agccaaatcc cacgaggctg attcacctaa
     1021 cgaaataggg aaaatcgttt tgtggccgtg aataacatcg taaccaaaca acaaaggaat
     1081 acctaatctt gattcttcga cagcaattct ctgaagtttg cgggtgtaag ctgccgtgtg
     1141 tgcattaaat atatttccgc agtttccttt ccggatttcg tccatatatc cttttttgag
     1201 ggaggggcca gtcacatccc agtcgctggt gtacagaacc atttgaccta ttttttcttc
     1261 gagagtcatt aacttcataa ctgaatcgac tttctcaccg attctttttt cctccgaagt
     1321 ttgcgtggtg tttttacagg cggtgaagag gactaccgcc aaaattgcaa tggcaatgtt
     1381 ttttctcatg tcaatgtgat ttatttatac cttaaaaagt taacgctgca aagtaacagc
     1441 gctatttttc tttaaacaat ttttttgacc caatatcatc actacaacta aaaataatta
     1501 aaaaagaaaa ccctatttta accctacaaa ggattaaaat agggttttaa ttaactggtt
     1561 atttgatata taactaacta tctatttttg ataaaattat ttaaattcaa tcataaattc
     1621 tgtcaaactc ttggttgaag gaaggccaat cttctttcgg atgcgatatc ggcccacttc
     1681 aacacctttc aacgagatat tcataaggtg ggcaatgtct ttactggaga ggttcaggcg
     1741 caaataggcg caaaaacgaa gatcgtttga cgttagttca ggatagttgg tatgtaaatt
     1801 acggaaaaag ttctcgtgaa tgcggtcaaa attggtttga aaaatggccc aatcgtctgc
     1861 cgacgacagg ttttcgtcca gcaaacgtat cagcttatcg taatatttat ttggatattg
     1921 cgaacctaat gcatttttct gattcactac ttcttctttg atcgtaacca gaatctcgtt
     1981 tttcttgatg atcgtcatcg tcgattcagc cagttctttg ctttttacag tcagttccga
     2041 ttccagcttt tcgttttgaa gcgctataat ctgctgttca cgcttttcaa tttctttccg
     2101 gcggatatcc tcctgttcgc gatgaatttt ttcctttttc tcctgaaaca gatgctgtac
     2161 atacagataa ataccaactc cggacaaaac aatcagaatg gcataaagga ttttagctgc
     2221 caggctcagg taaaacggcg gttctacaat aaatgagtag cttgtttccg aaagtttgat
     2281 accacttttt gtaagcactt ccacgtttag tctgtattgt ccatgaggta ggtaattgta
     2341 tgttttttgc gacgaagggc tggcttcgct ccataccaca tccaaaccat ccagtttata
     2401 gcggaaaaaa atattgttca gggtgctgta ttgcgggaaa aatactgtga aaaggatatt
     2461 gtttcgttta aaaggtgttg atggagtctg cttggacgat agcggaagga aaactatttc
     2521 tttggattcg gcatctgatg cctgaatgct tttcaattgc aaggtgctaa cagccgtttt
     2581 tcggtttagt ttatccgcct gatacaatgc cagtccattt tccagcgtaa atacacattc
     2641 gttgtctgaa atcggtacta tattttggta atcatccacg gtttggttga ggaaaagagc
     2701 atactgaacc acatccaaca cactggtgta ccctggtttt acctgaacaa gggccgattc
     2761 atcatcatga ataaaccaat ataagtctgc tttgaagtgg caaaccctgt aggaacgtga
     2821 gaaatacccc aggcttttat tgagttcatt gtagggaata attttctttt gaatatcgtc
     2881 gtaggtataa aaagcgttgt tatctgtgaa aaccacccgg ttattgatgg agaaaacatt
     2941 aattgggtaa ttgtgctttt tgtccaggga gttataggtg cgtatgtgtt caattttttt
     3001 tagatcgggt gccagctgaa tggcgtacaa accctgatgc aggtggcttg cccagatggt
     3061 accggtataa tcgatttcga tatagcggac cgggtttaca aaattgtcta ccgcatggct
     3121 aaaaacccat ttcccattca ctttttcgta tatgcaaagt tgggtataag tgccctgaac
     3181 cagcacttct ttgccgtgta tatagccttt tttgatacag attccacctt ttaccggcga
     3241 aaggaagtta gcccctctgc ccgaaacatc gaaagtaact tcgttgttac cgcaaatttg
     3301 ctggtcgtca aatttatcca cactccaaac ctggcctttt acctgcggct ccagcttcag
     3361 gttgcggata ctttttttgt cagcactgag ttccgctgtg tacagtccct ggttggtgcc
     3421 aataaaaaga gtcggtgcag catagctgag cgaataaatg gcacctaccg acggattgaa
     3481 agaatggata taacggatgg aggagttgag ttgcaacagt gcaatgccct tatccaatgc
     3541 cagccagagg ttattgtcac gatcgcaaaa catgcccaga acagtgttgt tttgcaatac
     3601 attggagctg ttgagcgtcc agagctttat tccctgtttg ttgatggccg tcacgccatt
     3661 cagtatcgtt ccaagcagga ttaacccgtc cggcgatatg actgcccggt ttatttccgc
     3721 tcttttaatt tcttcatcag cattcgtttg aaaccggctg aaagttgagc catcgtacaa
     3781 aaataatccg tcagatttgg ttaccaacaa agcccgggtt ttgtcgaatg ccagcactga
     3841 gataaccgga cttttcaata cttcattttt taccggaacg acagtgtttt tcccgaagtt
     3901 gagcatactc aatccgtatt ggtcggtatg ggtgaacagg ttgtggttat aactattaaa
     3961 aaataaaaag gtgtacgggc aacggtgacc tttgacttca ccgttcttaa aagtaaaata
     4021 agaagtaaac gattggaaaa tgatagttcc gtccagattc aggatagtcc agatttcatc
     4081 gttttgcatg gagtatccgc gcagtttcga tgagagcgat ttgtagctta accggcccgc
     4141 agcatccttt tcgaaataac caaactcttc gaaagaaccg acgtaaatcc ggttatcttt
     4201 atcaaccaac agcgcccgaa ccgttttgtt gccggccatt ttgtgtattt gccacatcga
     4261 tccgtcaaat tccagcatgc cctggttgct tccaaagtac ataatgccat tgtttccctg
     4321 gccgatcgac cagttttggt tggacgcatt gtaatctttc ttggtaaatt gggtgacaac
     4381 aggggtaaat tcctgtccaa tagtggaaac ggagatgaaa atcagtgtaa gaagtagata
     4441 ctttcctgac agcacattca taagcgtatg atttaggtaa agcgagccct aggtgttgat
     4501 tttttcaact cacaaataac ggaaagttcc ccgacatgac aaaataaatt tagcttaaac
     4561 tgttttctta atgataaaca gagcatattt ttaagttata acactccagg ttcattccct
     4621 gtttgtcgtc gtggcacaga ttttgattct tcatcgtccg gctccataga actattgccg
     4681 aatggatatg caactattta ataccaatgg gaacaagtcg gtatccattc atcaaaaaat
     4741 tataaataca ggttgtttct gtatcaaata aatccattac ttgattaaaa tacgtacttt
     4801 tgtatgcatt ttccaattca gatcgttttt gccatttaaa ataaactaca cgagtattcg
     4861 ttattaaaaa tatctttaaa caaaacaagt ataaaaatga tgctttcact cattcttcaa
     4921 gccacaccgg tagttgatac tgttagttca gctgttaact ctattcctgt tgtttcgcaa
     4981 ccagccgca
//
LOCUS       DATDNM010000695         4184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_190860, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000695 DATDNM010000000
VERSION     DATDNM010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4184
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190860"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..2391)
                     /locus_tag="VI413_11760"
     CDS             complement(52..2391)
                     /locus_tag="VI413_11760"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEY6915344.1"
                     /translation="MNKYILSLFILMTLSLGLANGQQNQPGTFVAGDKEFLLNNKPFT
                     IRAGELHYSRIPKAYWDHRIKLAKAMGMNTVCIYLFWNFHEQEQGVFDFTGQKDVAEF
                     VRLIQKNGMYCILRPGPYVCAEWDMGGLPWWLLKKDDLKVRRKSDQFFMDKVKVYLKE
                     AAKQLAPLQIQNGGPIIMVQVENEYGTWGDDQKYMEIMRDNIREVGFDKAQLLRCDWS
                     SNFQRYKLDGAVNALNFGAGSNIDDQFRKFKEVNPTSPLMCGEYWTGWFDQWGRPHET
                     RDVKSFIGSLKDMMDRKISFSLYMAHGGTSFGQWAGANAPAYAPTTSSYDYNSPIDEG
                     GNPTDKFYAIRDLLKNYLQEGEVLPEIPQNPEKTITVPSIEFKQTANIFDNLPAAKQS
                     EDVKPMEYFNQGWGSIIYRKQIPASKTKQKLIIKDVHDWATVFINGKIVGKLDRRRGE
                     STVELPAMKSKSRLDILVEGMGRVNYGEAIIDRKGITSKVLLSDGKTETELKNWTIYN
                     LPVDYDFQTKAKFNKKAAQGPAWYKATFNLTETGYTYLNMSTWGKGMVWVNGNNLGRF
                     WKIGPTQTLCVPGCYLKKGVNEIIVLDIDKPTCTSISGLNHPILDVIGKDDGQTRKAG
                     KTLNLNGVNAVVSGTIPAGSGWKSIDLPELTSGQYFCFEALSAQDPNDNSTSIAEFEV
                     IGEDGKAISSINWKVVYADSEETTKAANGADKLFDIQESIIWQTKIGDKANHPHQVVI
                     DMGKEFKVKGFRILPRSDKSTKGIVKDYRFYLEKKAFKF"
     gene            complement(2474..3598)
                     /locus_tag="VI413_11765"
     CDS             complement(2474..3598)
                     /locus_tag="VI413_11765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008997946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEY6915345.1"
                     /translation="MRKFKHILFLLFIINSVGASQKTPAKTDLIQTIELVNNYWQSAN
                     PTPGNPFWDVAAYHTGNMEAYFVTGNETYRRYSESWAEKNQWKGAKSDDKSQWKYKYG
                     ETPQHVLFGDWQICFQTYIDLYNLAPDSLKIARAREVMEYEMSTPNNDYWWWADGLYM
                     VMPVMTKMYKVTKNPLYLEKLNEYFTYAKSIMYDPETKLFYRDAKYVYPKHKSVNGKK
                     DFWARGDGWVFAGLAKVLKDIPKDSRYRPIFLKHYKDMAKAIVKSQQPEGYWTRSMLD
                     PQHAPGPETSGTAFFTYGLLWGINNGYLKEKTYLPAALKGWNYLSTVALQPSGKVGYV
                     QPIGEKAIPGQVVDANSTANFGVGAFLLAASEMVRLTDKQ"
BASE COUNT         1121 a          866 c          763 g         1434 t
ORIGIN      
        1 tcattttaaa acattccgta aaagtaataa atatcaatca attatgattt atcaaaactt
       61 aaatgccttc ttctccagat aaaaacggta atcttttaca attccctttg tacttttatc
      121 tgaccgcgga aggatgcgga agcctttcac tttgaattct ttacccatat caataactac
      181 ttgatgcgga tgatttgctt tatcgccgat ttttgtttgc cagataattg attcctgtat
      241 gtcaaacaat ttatccgcac cattagcagc ctttgttgtt tcttcactgt cggcatacac
      301 tactttccag ttgatagaag agatagcttt tccatcttca ccaattacct caaactcagc
      361 tatagaagtt gagttgtcat tcggatcttg tgcacttagc gcttcaaaac agaaatactg
      421 tcctgaagtc agttcgggta aatcgataga tttccaaccg ctaccggcag gaattgttcc
      481 ggatactacc gcgtttacgc cgttcagatt taatgtttta ccggctttcc gtgtttgtcc
      541 gtcgtccttg ccaattacat ccaaaatcgg gtgatttagt ccggaaatgc ttgtgcatgt
      601 tggcttgtca atatcgagaa cgatgatttc attcactccc ttttttaggt aacagcctgg
      661 aacacaaagt gtttgtgttg ggccgatttt ccagaaacgt ccaagattat ttccgttaac
      721 ccaaaccatt ccttttcccc atgtgctcat attcaggtaa gtataacctg tttcggttag
      781 attgaacgtt gctttatacc atgctggtcc ttgtgcggct tttttattga atttagcttt
      841 ggtttggaaa tcataatcaa caggcaaatt atatatagtc cagtttttca gttctgtttc
      901 agtttttcca tctgataaaa gcactttgct ggtaatacct ttgcggtcga taattgcttc
      961 gccatagttt acacgtccca ttccttcaac taaaatgtcc agacggcttt ttgatttcat
     1021 tgccggaagc tcaactgtac tttctcctct gcgacgatcc agtttgccga caattttacc
     1081 gtttataaat actgttgccc agtcatgaac atctttaata atgagttttt gctttgtttt
     1141 tgaagccgga atttgttttc gatagataat tgacccccag ccctgattga agtattccat
     1201 tggtttgaca tcttcagact gtttagcagc cggcagattg tcgaatatat tggcagtttg
     1261 tttaaactcg atcgaaggaa cagtgatagt tttttccgga ttttgtggaa tctccggcaa
     1321 tacttctcct tcctgtaaat aatttttcag caaatcccgg atggcgtaaa atttatctgt
     1381 cgggtttccg ccttcatcaa tcggcgaatt ataatcgtat gacgatgttg tgggagcata
     1441 agcaggtgca ttggcaccgg cccattgtcc gaatgaagtt ccgccgtgag ccatgtaaag
     1501 gctaaatgaa attttacggt ccatcatgtc ttttaagctt ccgataaagc tttttacatc
     1561 acgggtttcg tgcggacgac cccattggtc gaaccaacct gtccagtatt caccgcacat
     1621 caatggcgaa gttggattta cttccttgaa cttgcggaat tgatcgtcta tatttgatcc
     1681 ggcgccaaag ttcagtgcat ttacggcacc atcaagtttg taccgttgga aattagaaga
     1741 ccagtcgcat cgcaacagtt gggctttgtc aaaaccaact tcacggatat tatcgcgcat
     1801 tatctccatg tatttctggt cgtctcccca ggtaccatat tcattttcaa cctgaaccat
     1861 gataattggc ccaccatttt gaatttgtag cggagcaagc tgtttagcag cttctttcag
     1921 gtaaactttt actttatcca tgaagaactg atctgatttg cgacgaactt tcaaatcgtc
     1981 ttttttcagc aaccaccagg gcaacccacc catatcccat tcggcacaaa catatggacc
     2041 gggacggaga atacaataca tgccgttttt ctgaatcaac cgaacaaatt cggccacatc
     2101 tttctgacct gtaaagtcga acactccttg ttcctgctca tgaaaattcc aaaataaata
     2161 gatacatacc gtgttcatac ccattgcttt ggcaagttta atacgatggt cccaatatgc
     2221 tttcgggata cggctgtagt gtaactcccc ggcacggatg gtaaacggtt tgttgttcag
     2281 tagaaattcc ttgtcgccgg ctacaaaggt acccggttgg ttttgttgac cgttagctaa
     2341 tcccaacgaa agagtcatca aaatgaatag cgataaaatg tatttattca tagtgcaaac
     2401 attaattcaa accggaatga atcagaatgt atccggcttt ttatctttta ttataccttt
     2461 gttttttttt attctattgt ttatctgtaa gtctgaccat ttctgaggct gcaagtaaaa
     2521 atgctccaac accaaaattt gctgtagagt ttgcgtccac tacctgtcca ggaatggctt
     2581 tttcgccaat tggctgcaca tatccgactt ttccggaagg ttgtaacgct accgtagata
     2641 agtaattcca accttttaat gcagccggca aatatgtttt ctcttttaaa tatccgttat
     2701 ttattcccca aagcaaacca taggtaaaaa atgccgttcc actggtttcc gggcccggag
     2761 catgctgtgg gtcaagcatg ctgcgcgtcc aatagccttc gggttgttgc gattttacaa
     2821 ttgcttttgc catatctttg taatgcttca aaaatattgg acgataccta ctgtctttgg
     2881 gtatgtcttt cagtacttta gccagtccgg caaaaaccca gccgtcacca cgtgcccaga
     2941 aatctttctt tccatttaca cttttgtgtt tcggataaac atattttgca tcgcggtaaa
     3001 atagtttggt ttcaggatca tacataatgc ttttggcata tgtaaaatac tcgttcagtt
     3061 tttctaaata aagcgggttc ttagttacct tatacatttt ggtcatcacc ggcataacca
     3121 tatacaatcc atcggcccac caccaataat cattgttagg tgtactcatt tcatattcca
     3181 tcacttcacg ggcgcgtgct atttttaggc tgtcgggtgc cagattgtac aagtctatat
     3241 aagtttgaaa gcaaatttgc caatctccaa acaaaacatg ctgcggagtc tcaccgtatt
     3301 tgtatttcca ttgcgatttg tcatcggatt tagcaccctt ccattggttt ttctcagccc
     3361 agctttctga atatcttctg taagtttcgt ttccggttac aaaataggct tccatattgc
     3421 cggtatggta ggcagctaca tcccaaaatg gattccctgg tgttggatta gccgattgcc
     3481 agtaattatt tactaattcg atagtttgaa tcaagtctgt ttttgcagga gtcttttgtg
     3541 atgcacctac agaattaata ataaacaaca ggaataagat atgtttgaac ttacgcattt
     3601 aaaaattgtg ctaagcagtt aaataatagc ttggtatgat tttataatta gtgttttgaa
     3661 caggttgaaa atgggtgaaa aatcaactat acaaaaataa tgggtgtaaa tgtattgtta
     3721 gtatataatt cgttcaataa ggtggaggat tttccaaata cagattatgc ggttgatatt
     3781 gccatattct tttagtcttt aggacttcat aagtatttga tatattgttt gtttttatat
     3841 aaatataata gtattataaa aatagaattt cctcgttttt gatttatttg tcccctaaac
     3901 aatttttatt ttcgcttatc tttgctcaat aaatcaagga ttaataattc tttagttcgg
     3961 caagcgtttt ttttgttcat tgaagtccgg ctggcttgta tcacattaga aactgaatga
     4021 atgtctatta catgattaat gactcttatc ttaaattttg aagcatatga aattaaaact
     4081 ttactacgca tttttctttc tcattttttt tgagattgcc tttatgcccg ttcaatctca
     4141 aagtgtttcg ctcaccataa agaactggga cggaactgac aaaa
//
LOCUS       DATDNM010000696         2890 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1259775, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000696 DATDNM010000000
VERSION     DATDNM010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1259775"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            388..>2890
                     /gene="polA"
                     /locus_tag="VI413_11770"
     CDS             388..>2890
                     /gene="polA"
                     /locus_tag="VI413_11770"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEY6915346.1"
                     /translation="MKKLFLIDAYAIIYRAYYAFIRNPRVNSKGLNTSAIFGFVNTLE
                     DVLKREKPTHIAVAFDPKGKTFRHEAYEQYKAQREATPEDIRLAVPIIKDLIKAYNIP
                     ALEVPGYEADDVIGTMAKKAEQAGFEVFMLTPDKDYGQLVSDHIYMYRPKHTGGFEVM
                     GPEEIKAKYELHSHEQVIDLLGLMGDSSDNIPGCPGVGEKTAVKLLKEFGSIDTLLER
                     TNELKGALKTKIEENKEQIIFSRFLATIKIDVPIDFDEKSLELEPRNETELRALFDEL
                     EFRTMSAKMGANPFTSLPPDQPTTSIAFAKPKKSTGQMSLFDEPTEQAEVAPNVQQPI
                     ASAIPVFDENFTGLRTINETPHNYILVDNKIKRSDLVSKLFMQKSFCFDTETTGLDMF
                     MSDLVGMSFCFKAGEAYYVSLPVDKEEARHVVHEFKVVFESEQIEKIGQNIKFDLLML
                     AQYDIQLKGKLFDTMIAHYLVQPELRHGMDYLAEIYLKYRTIHFEDLVGGKGKNQADI
                     RSIDIDKLCDYAAEDADITFKLKQVLEKELTENSLEKLFYEIEMPLLRVLAIMERTGV
                     RIDSEALRQSSEILTEEMLKLEKEIHEIAGFEFNVGSPMQVGEVLFDRLKLDDKAKKT
                     KTGQYSTAEDVLEKIRSKHPIIGKILDYRGLKKLLSTYIDALPQIINPVTGKVHTSYN
                     QTVAATGRLSSTNPNLQNIPIRDAQGKEIRKAFIPDEDNIFMSVDYSQIELRIMAHLS
                     GDANMMEAFNSGHDIHTATAAKIYKVPLDEVTTDMRRKAKTANFGIIYGISVFGLSDR
                     LSIPRAEAKELIDGYFATYPQVKKYMDISIQRAKEM"
BASE COUNT          964 a          591 c          563 g          772 t
ORIGIN      
        1 tgaagcacat attcatttac actttcgagc atcggattat cagtgctcag tgcctccgca
       61 aatgtttttc caaacaattg catttctgtc aaaattggtc gtttaatgtt ttcaataaag
      121 ttcatctgaa cgctcatatt ggtgtgctct gcaaaagtaa acaattttgc cgtttgttta
      181 actctttaag attatttctg tataaatttt aattactttt acagtcgttt tgatattgca
      241 acccattttt aacgttttat taaatacaaa taagtaataa attaacgatc aaataacaaa
      301 aaagtttata aatcagcaat acaatacgca tttttagttg ttacaagatt ttaaattcct
      361 tctttccaca gtttacactc tgattttatg aagaaactct ttctcataga tgcctacgcc
      421 atcatatatc gcgcatatta tgctttcatt cgcaacccac gcgtaaattc caaaggactg
      481 aacacttctg caatatttgg atttgtaaat acccttgaag atgtgctcaa gcgcgagaaa
      541 cctacacaca ttgccgttgc cttcgatcct aaaggaaaaa cgtttcgtca tgaggcttac
      601 gaacaataca aagcccagcg cgaagcaact ccggaagata tccggttagc tgttccgatt
      661 attaaggatc tgattaaagc ttacaatatt cccgcactcg aagttcctgg atacgaagcc
      721 gacgatgtga ttggtaccat ggcaaaaaaa gctgaacaag ccggattcga agtgtttatg
      781 ctaactccgg acaaagatta cggacaactt gtatctgatc acatttatat gtatcgcccc
      841 aagcatacag gcggttttga ggtaatgggg cccgaagaaa taaaagccaa atatgaactt
      901 cacagccatg aacaagtcat tgatttgctg ggattgatgg gcgattcatc tgataatatt
      961 cccggctgcc cgggagttgg tgagaaaact gcagtaaaat tattgaagga atttggcagc
     1021 atcgatacac tacttgaacg taccaatgag cttaaaggag cattaaaaac aaaaatcgaa
     1081 gaaaataaag aacaaattat tttctcccgc tttctggcaa cgattaaaat tgacgttcct
     1141 attgatttcg atgaaaaaag cctggaatta gagccaagga acgaaaccga acttcgagca
     1201 ctgttcgatg aactggaatt ccgcactatg tcagcaaaaa tgggagctaa tccatttact
     1261 tcgcttccac cggaccaacc aactacaagt attgcttttg ccaaaccgaa aaagtcaacg
     1321 gggcaaatgt cgttgtttga tgaaccgaca gaacaggctg aagtagcacc aaatgtacag
     1381 cagcccatcg catctgcaat tccggttttt gatgaaaact tcaccggact aagaacaatc
     1441 aatgaaacac cacacaacta catattagtt gacaataaaa taaagcgttc cgacttagtt
     1501 tcgaaactct ttatgcaaaa atccttttgc tttgacactg aaactaccgg gctggatatg
     1561 tttatgtctg atttagtagg aatgtctttt tgtttcaaag caggtgaagc ctattatgtc
     1621 tcattgccgg tcgataaaga agaagcccga catgtagttc atgagtttaa ggttgttttc
     1681 gaaagcgagc agattgaaaa aataggtcaa aatatcaaat tcgatttgtt gatgctggct
     1741 caatatgaca tccaactgaa aggaaaatta tttgacacca tgattgcaca ttacctggtt
     1801 caacccgagc ttcgccatgg aatggattat ctggccgaaa tatacctgaa ataccgcacc
     1861 atacatttcg aagatttggt tggaggaaaa ggcaaaaacc aagcggatat tcgctcaatt
     1921 gacatcgata aactttgtga ttatgcagct gaagatgctg atatcacgtt caaactaaaa
     1981 caagtactcg aaaaagagct aacagaaaac tcactcgaaa aacttttcta cgaaatagaa
     2041 atgccacttc tgagggttct tgccattatg gaacgaaccg gcgtacgcat tgacagtgaa
     2101 gcattgcgcc aaagttcaga aattctgacg gaagaaatgc ttaaactgga aaaagaaatt
     2161 catgaaatag ccggttttga attcaatgtc ggatcgccaa tgcaagtcgg cgaagtgctt
     2221 tttgaccgat taaagctgga cgacaaagcc aagaaaacaa aaacagggca gtattcaaca
     2281 gccgaggatg tattggaaaa aattcggtca aaacacccca tcattggcaa aatactcgat
     2341 tacaggggat tgaaaaagct gctaagtact tatattgatg cattgcccca aatcattaat
     2401 ccggttaccg gcaaagtaca tacctcctac aatcaaacgg tggctgcaac agggcgactt
     2461 agctccacca atccaaactt acaaaatatt ccaatccggg atgcacaggg aaaagaaatc
     2521 cgcaaagcgt ttatacccga cgaggacaac attttcatga gcgtcgatta ttctcagatt
     2581 gaattgcgca tcatggccca cctgagcgga gacgccaata tgatggaagc tttcaatagc
     2641 ggacatgata ttcatacagc cacagctgcc aagatatata aagtcccgct ggatgaagtt
     2701 acgacggata tgcgtcgtaa ggcaaaaaca gccaactttg gcattatata tggcatttct
     2761 gtttttggcc tatccgacag actgagcatt ccacgggcag aggccaaaga attgattgac
     2821 ggatattttg ccacttaccc ccaagtgaaa aaatacatgg atataagtat tcaacgagct
     2881 aaagaaatgg
//
LOCUS       DATDNM010000697         2733 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1151194, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000697 DATDNM010000000
VERSION     DATDNM010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2733
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1151194"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..249)
                     /locus_tag="VI413_11775"
     CDS             complement(<1..249)
                     /locus_tag="VI413_11775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008150491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEY6915347.1"
                     /translation="MEKTLVIIKPGAIQRGLIGEVIRRFEQKGLQICGLKMLQLTDQI
                     LEEHYAHIAEKPFFPRVKAAMKATPVIVLCLKGMDAVHV"
     gene            complement(338..2434)
                     /gene="recG"
                     /locus_tag="VI413_11780"
     CDS             complement(338..2434)
                     /gene="recG"
                     /locus_tag="VI413_11780"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEY6915348.1"
                     /translation="MDLSYQDIKFLPGVGPKKAELLNKELGIRSAEDLVRHYPYKYVD
                     RSRFYYLHEISEEMPFIQVKGQIIRFEKVGEGHNQRLTAIFTDGKSTIELVWFKGVKY
                     VIDKYKTGIQYVVFGKPSPFNGRFNIVHPEIELVSQLPPPEQMGLQPFYNTSEKMKSS
                     FLNSKTLQKILFPIIQGIKTGIPDTLPAYLLHKFALMNLTDSLVNVHFPKNADALNKA
                     RQRLKFEELFYIQLNILQQTKWRDLHFRGFVFGQIGHNFNSFFKDCLPFDLTNAQKRV
                     IREIRIDVASGRQMNRLLQGDVGSGKTLVALMCMLMAVDNGFQACIMAPTEILATQHF
                     ASITQFLGDLDVKVALLTGSTRPKARVELHEKLHSGEMNLLIGTHALIEDTVQFKNLG
                     LVVIDEQHRFGVEQRSKLWKKNVQPPHILVMTATPIPRTLAMTLYGDLSVSVIDELPP
                     GRKPIQTYHYYENKRQGLNQFIAKQVEVGRQVYIVYPLIQESEKIDLQNLETGYDYMR
                     EVFPNYKISMVHGKLKPAEKEYQMQKFVSGETQIMVATTVIEVGVNVPNASVMVIESA
                     QRFGLSQLHQLRGRVGRGAEQSFCILLTGYKLAADTRKRMEIMVRTNDGFEISEADLK
                     LRGPGDLEGTQQSGLPFDLKIANLAQDGKMLEIARRAAMEILEDDPQLEKPENRVMAN
                     QLRKMKTNTLNWGSIS"
     gene            complement(2436..>2733)
                     /locus_tag="VI413_11785"
     CDS             complement(2436..>2733)
                     /locus_tag="VI413_11785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915349.1"
                     /translation="SYLSINTIIQSIALFVWIKDISSRSKYSSLIQSNISSYSYGIYL
                     VHIMAIGILFQNGIYWNFAHPLLSLPLLTIGVLICSFLIIFVLRKIPFGKYIAG"
BASE COUNT          748 a          622 c          564 g          799 t
ORIGIN      
        1 aacgtgcaca gcatccattc ctttcaggca taatacaatt acaggagtgg ctttcatggc
       61 agcttttaca cgtggaaaaa acggtttttc agcaatgtgg gcataatgtt cttccaaaat
      121 ctgatcggta agttgcaaca tcttcaaccc gcaaatttgt aacccttttt gttcgaatcg
      181 tcttattacc tcaccaatta aaccgcgctg aattgctccg ggcttgatta ttacaagtgt
      241 tttttccata aatgtaaatt aaaattgtaa gtgtataaat ttaaagttct ccaaaaataa
      301 cgaaatgagg catgcggtca aaacaaattc aagtttctta acttattgag ccccaattta
      361 aggtatttgt cttcattttc cgtaattgat ttgccataac ccgattttcc ggtttttcca
      421 gctgaggatc atcttccaga atctccatgg cggcgcgacg agcaatttcc agcatttttc
      481 catcctgcgc cagattggca attttcaggt cgaaaggcaa gccgctttgc tgcgtacctt
      541 ccaaatcgcc tgggccacga agctttaaat ctgcttccga aatttcaaag ccgtcattgg
      601 tccgcaccat gatttccatg cgtttccgtg tgtcggcggc aagtttgtag ccggtaagca
      661 gaatgcaaaa tgactgttcg gcaccacgtc caacccgtcc gcgcaactga tgcaactgcg
      721 acagtccgaa tcgttgtgca ctttcaatca ccattaccga agcattcggc acatttacac
      781 cgacttcaat aacagtcgtt gcaaccataa tttgtgtttc gcccgataca aatttctgca
      841 tctggtattc tttttcagca ggcttcagtt tcccgtgaac catgctgatt ttgtaattcg
      901 gaaaaacctc ccgcatataa tcataacctg tttccaaatt ctgcaaatca attttttccg
      961 attcctgaat aagcgggtac acaatgtaaa cctgtcgtcc tacttccact tgcttggcaa
     1021 taaactgatt cagtccctgt cgtttgtttt cgtaataatg ataggtttga atcggttttc
     1081 gaccaggtgg aagctcgtca attaccgaaa cacttagatc gccataaagt gtcatggcga
     1141 gtgtgcgtgg aataggtgtg gcggtcatta ccaagatatg tggcggttgc acgttctttt
     1201 tccaaagctt ggaacgttgc tccactccaa accggtgttg ttcgtcaatc accaccaatc
     1261 caaggttttt gaattgaacg gtatcttcaa tcaacgcgtg cgttccaatc agaaggttca
     1321 tctcgccact gtggagtttc tcgtgcagtt ccacgcgtgc tttggggcgg gtagagccgg
     1381 tgagcaaggc caccttaaca tctaaatcgc ccaaaaactg agtaatgctt gcaaaatgtt
     1441 gtgtagccag aatttcggtg ggagccatga tgcaggcctg aaagccatta tccacagcca
     1501 tgagcatgca catgagcgcc accagcgttt tcccgctgcc cacatcccct tgcagcaaac
     1561 ggttcatttg acggccggaa gctacatcaa tgcgtatctc gcgaatcacg cgcttctggg
     1621 catttgtgag atcaaacggc aaacaatcct tgaaaaaact attgaaatta tgaccgattt
     1681 gcccaaaaac aaagccccga aaatgtaggt ctcgccactt ggtttgttgc aggatattca
     1741 gctggatata aaataactcc tcaaatttca gccgttggcg ggctttgttc aatgcatcgg
     1801 cattcttagg gaaatgcacg tttaccagcg aatcggtgag attcattagt gcaaatttat
     1861 gcaacaaata cgcgggaagc gtatcgggaa tgccggtttt aataccctga ataatgggaa
     1921 aaagaatctt ctgaagtgtt tttgaattca gaaaactgct tttcattttc tctgaggtgt
     1981 tgtaaaaggg ttgcaaaccc atttgttcgg gaggtggcag ttgagatacc agttcaattt
     2041 caggatggac aatattgaac cgcccgttga atggcgatgg tttcccgaaa acaacatact
     2101 gaatgccggt tttgtatttg tctatgacgt attttacgcc tttgaaccag actagttcaa
     2161 tcgtgctttt accgtcagtg aaaatggccg ttagccgctg gttatgccct tcgcccactt
     2221 tctcgaaacg aatgatctgt ccttttacct gaataaacgg catttcttcc gaaatctcgt
     2281 gcaggtaata gaaccggctc ctgtcaacat atttgtacgg ataatgccgc accaaatcct
     2341 cagcactgcg tatgccgagc tctttgttga gcaactccgc ctttttcggt cctacacctg
     2401 gcagaaactt tatgtcttga taggagagat ccatattatc cagcaatata tttcccaaac
     2461 ggaatttttc ggagcacaaa aataatcaga aacgagcaaa ttaatacacc tattgttagt
     2521 aagggtaatg aaagcaaggg atgtgcaaaa ttccagtaaa taccattttg gaataagata
     2581 ccgatagcca tgatgtgcac tagataaatg ccgtagctat aactgcttat atttgattgg
     2641 attaatgagc tgtacttgct tctactggaa atatctttta tccatacgaa aagcgcaatg
     2701 gattgaataa tcgtatttat cgacaaataa ctg
//
LOCUS       DATDNM010000698         7451 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1899396, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000698 DATDNM010000000
VERSION     DATDNM010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7451
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1899396"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..753)
                     /gene="pstA"
                     /locus_tag="VI413_11790"
     CDS             complement(<1..753)
                     /gene="pstA"
                     /locus_tag="VI413_11790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005867077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEY6915350.1"
                     /translation="MTPIIKPGNIDRKKRISQGVAFTIFKLMSYAVVAILILILGFII
                     TKGIGVISWDFLTKAPEEGMTKGGIYPAIIGTLCLVAGSSLFSFPIGIMSGIYMNEYA
                     NGSKIATFIRIMTNNLSGVPSVVFGLFGMALFVNTMKFGDSILAGSLTLGLLSLPLVI
                     RTTEESLKAIDKSYREGSLALGATKLQTIRKVVLPMAFPNIITGLILSIGRVSGETAP
                     ILFTVAAYFLPKLPHSIFDQVMALPYHLYVIST"
     gene            complement(802..1992)
                     /gene="pstC"
                     /locus_tag="VI413_11795"
     CDS             complement(802..1992)
                     /gene="pstC"
                     /locus_tag="VI413_11795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEY6915351.1"
                     /translation="MKRFIEKLVEGTLLISGSITSITILLIVIFLFKEASGLFNTPVI
                     EEGYVLAMNKSNPVKKLNSYQIKEIFDGKITNWDEVGGKEEPIEVVRLSDLTNYYTEE
                     ELGAEFENIPAKSSELTAKHPGILLFLPKQYVAKKFDGILLDHETIHPGDFFGGKEWY
                     PTASPSAQYGLLPLLLGTLWVSLGAILLSLPFGIAVSVYLAEIASMRVRNFLKPVIEL
                     LAGIPSVVYGFFGLVVIVPFLQKTFQLPVGETALAGSIVLGIMALPTIITVAEDAMRT
                     VPRAMKEASLALGATQWQTIYRVVIPYAKSGITSAAVLGIGRAIGETMAVLMVTGNAA
                     VIPHSLLEPVRTIPATIAAELGEASAGSGHYQALFALGCILFLITMIISISVEFIGKK
                     KYNN"
     gene            2271..3575
                     /locus_tag="VI413_11800"
     CDS             2271..3575
                     /locus_tag="VI413_11800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915352.1"
                     /translation="MKLKSLPIIALGLITSVVAFSQEEKVDTLNVHEQRITTLEDGLF
                     QLKKLKFSGYIQAQWQSSQLDSMISKSNDMKVGTGAYGAEKVSNGTYNRFGVRRGRLK
                     ATYEDFGCQAVIEFDISEGGLKTKDVYLNVLDPWVNTFAVKGGVFDNPFGSEIAYSSS
                     KLESPERSRLIQTLFPDEKTLGAMLTIQAPKTSKWNVLKLETGLVAGNAISKDYKSKK
                     DLAAHLTYNNSTPIMKYGIGVSMYSGSVIQTDTNVYVMKNGAFNRNVGTKPNEFATRQ
                     YFGVDGQFSIASDLGLTQIRAEYITGTQPGAAGSSASPNGFDPTASTFTAAPTYIRNF
                     SGGYVNFVQDIADTKHSIVVKYDWYDPNTSVAGDKVGVAAKTGKADMAYSTLGLGYMY
                     RLNNNVRLMAYYDMVSNESTKVKGYFKNVNDNVVTVRLQYKF"
     gene            3637..4446
                     /locus_tag="VI413_11805"
     CDS             3637..4446
                     /locus_tag="VI413_11805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009859744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PstS family phosphate ABC transporter
                     substrate-binding protein"
                     /protein_id="HEY6915353.1"
                     /translation="MKKLILSLMMVCALAPSFYAQKIKGSDTVLPLAQKEAEVFGKKT
                     GKSVTVIGGGSGVGIAALLEGTTDIAMSSRKMKFDEKVKCQEAGKAITEKIIAYDALA
                     VIVNPGNPVSKLTRAQLEGIFTGKITNWKQVGGADLKIIPYSRETSSGTYEFFKEHIL
                     LNKNYVNSILSMPATGAIVQSVSQTKGAIGYVGLAYLEKNVKALQVSFDGKTYVAPSM
                     ATAKNKTYPVIRPLFFYYDKKLESKNAPLVSFVLSAEGQGIVEKIGYVPVK"
     gene            4719..>7451
                     /locus_tag="VI413_11810"
     CDS             4719..>7451
                     /locus_tag="VI413_11810"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6915354.1"
                     /translation="MKPLFFSRLVFTFLAVSFSISLFSQNSIEGRITDKKMQEPLTGA
                     TILIESTKKGTTADIDGNYKFKDLAPGKYTLVVSYVSYNPQRIPDVKVEAGNTTTQNI
                     ELDDAALQLQSVEVVARRRTDTELSMIKSVRSSVQVVSGVSSQQIGKTLDRDASEVVK
                     RVPGVTIQDNRFIVVRGLNQRYNNVWLNNAATPSSETDVKAFSFDAIPSNMIDNLMIY
                     KTGSPELAGEATGGFIKIFTKNIPDENFLTAEYGIGYNEQTTFKDTYRLNGSPLDVLG
                     LGAGARNIPSGFPANLGLSSIDQRDAYALKLSSSWIAQRHTALPNQKLSAAFGRKWAL
                     ENGAKLGTITSLNYNNTFSTRSNMKNYMYERFDETTETPVYLYKYNADIYSNESRVGL
                     MHNWAYESKDGTRLEFKNIVNQIGTDKTANTYGWNNYRQGNFKYFSNQYSNRTTYSGQ
                     LSGNHKLDEKTNAKLDWNAGFAYANRIEPNRQNWSMKENMDGVYQFMLPTVGSINELG
                     RLYLTNHEYVNTAAVNYEQKLMLGTLASTLKSGGYFEYKTRNYAERSICYKATNSGLY
                     SDDEINALNFETLFTEPYLGQNKVITLDEQTNVANTYNANNLLGAGYLAINLPVGKFN
                     IYGGVRGEYNRLMLNGYYNANSPVKVDEPAFNLFPSLNTSYNISEKSLLRVAYAQTIN
                     RPEFREVSPLSYYDFTEKNSVRGNPDLKDCSIRNVDLRFEHYPTPNETFSVAAFYKHF
                     SNPIEMVSVGTGSSFSFENALGATNYGLELELKRSLETMIGLKNFTLSLNASYIYSRV
                     EFANVETERPRPLQGQSPVVVNTALFYQNDKLGLSSALMYNVMGKRIVVAAQLNQGQV
                     IIPDIYEMPRHVVDFSLNKRLGKKLELKFGVKDLLAQNFTTQQTYKYLKDGVSKS"
BASE COUNT         2277 a         1503 c         1669 g         2002 t
ORIGIN      
        1 ggtggaaatt acgtacaagt gataaggaag cgccattacc tgatcgaaaa tgctgtgcgg
       61 cagtttcggc aggaagtacg cagcgacggt aaacaaaatc ggagctgttt cgcccgatac
      121 acgtccaatg gataaaatca atcccgtaat aatgtttggg aaagccatgg gcaggaccac
      181 tttgcgtatg gtttgcagtt tggtagctcc aagtgcgagg ctaccttcgc ggtacgattt
      241 atcgatagct ttcaacgatt cctcggtggt acggataacc agcggtaacg acagtaatcc
      301 caacgtgagt gaaccggcca gaatcgaatc tccaaacttc atggtgttta caaaaagtgc
      361 catcccgaat aatccgaata ccaccgacgg aacaccactc aggttattgg tcatgatgcg
      421 gataaaggtt gcaattttgc ttccgttggc atattcattc atgtagatac ccgacatgat
      481 accgataggg aaactgaata aactgctacc ggcaacaagg caaagcgtac cgataatggc
      541 aggataaatt ccgcctttgg tcatgccttc ttccggggct tttgtcagga agtcccaact
      601 gataacgccg attccttttg taattataaa tccgagaatc agaatcagta tggcaactac
      661 cgcataactc atcaatttga aaatggtaaa cgccacgcct tgcgaaatac gttttttccg
      721 gtcaatgttt ccgggtttta ttattggtgt catattttaa tgtgatgatg tggtaatgtg
      781 ataatattat aatgtgatgt gtcaattatt atatttcttt tttccaataa attcaacgct
      841 gatactgata atcatggtga taagaaacag gatacagccc agtgcgaaaa gtgcctgata
      901 gtgtccgctt ccggctgatg cttcgcccag ttcggcggca atggtggcag ggatggtgcg
      961 gactggttcc agtaacgaat gtggaatgac agcagcgtta ccggttacca tcaataccgc
     1021 catcgtttca ccgatagccc gaccaatgcc gagaactgct gctgaagtaa tacctgattt
     1081 ggcgtaggga ataactacgc gataaatagt ttgccattgt gtggctccca gtgccagact
     1141 ggcttctttc atggcccggg gaacagtgcg catggcatct tcggccacag ttataatggt
     1201 aggcagggcc ataatcccca gtacgatact tccggcaagg gctgtttcgc ctacgggaag
     1261 ttgaaatgtt ttttgcagaa acggaacgat aactaccaac ccgaagaatc cgtaaaccac
     1321 cgacggtatt ccggccagca attcaataac cggtttcaga aagttgcgaa cccgcatgga
     1381 ggcaatctca gccagataaa ccgaaacggc aatgccaaaa ggcagcgaaa ggagaatagc
     1441 cccgaggctt acccagagtg ttccgagtaa aagtggtaaa agtccgtatt gtgctgatgg
     1501 acttgcagtg ggataccatt cttttcctcc gaagaaatcg ccggggtgaa tagtttcgtg
     1561 gtcgagaagg ataccatcga attttttagc tacatattgc ttgggcagaa aaagcaggat
     1621 gcccgggtgt ttggcggtga gttcgcttga tttggcagga atattttcaa actcggctcc
     1681 cagttcttct tcggtgtagt aattggtaag gtcgctcagg cgaaccactt ctattggttc
     1741 ttctttgccg cccacttcat cccaattggt aattttacca tcgaaaattt ctttaatctg
     1801 ataggagttg agttttttta ccggattgga tttattcatt gccagcacat atccttcttc
     1861 aattaccggc gtattgaata gtcccgaagc ttctttaaac aaaaagatga caatcaataa
     1921 aatggtaata ctcgttatgc taccacttat taataaggtt ccttctacta atttttcgat
     1981 gaatcgtttc acgttgaaat ttcttttgtt gatttcgatg caaagaaata gcatccatat
     2041 tactttggaa ttaaaatggt gttacaaact cgttacaatc gcatctgtag tgacagctaa
     2101 aaccatttgt attataatgt gttttatatc aggattgttt acattcagaa taagaaaaaa
     2161 agacgtcgaa aataatgtaa tgttattgta acatgtttgg caaattcttg taacattgtc
     2221 gccgtttctt tgcatcgtga atcagtaaaa aactcaaatt aaaaatagac atgaaattaa
     2281 aaagtttacc cattatcgca ttaggcctta ttacatcggt cgtggcattt tcacaggaag
     2341 aaaaagtgga cacactgaat gtgcatgaac aacgtattac aacattagaa gatggattgt
     2401 tccagttgaa gaaactaaaa ttcagcggat atatccaggc tcaatggcag tcatcacagt
     2461 tggattctat gattagcaag tcaaatgaca tgaaagtggg aaccggcgct tatggtgctg
     2521 aaaaagtaag taacgggact tataaccgtt ttggggtacg ccgtggccgt ttaaaagcta
     2581 cttatgaaga tttcggttgc caggcggtaa ttgaatttga tatttctgaa ggcggattaa
     2641 aaaccaaaga cgtttatttg aacgtgcttg atccatgggt aaatacattt gcagttaaag
     2701 gtggggtttt tgataatcca ttcggatctg aaattgctta ttcttcttct aaactggaat
     2761 cgcccgaacg tagccggtta attcaaacac ttttccctga cgaaaaaacg ctgggagcaa
     2821 tgttgacaat tcaggctcct aaaacttcga aatggaatgt attgaaactt gaaacaggtt
     2881 tagttgccgg taatgccatc agcaaagact ataaaagcaa aaaagacctt gcagcgcact
     2941 taacgtacaa caattctact ccaataatga aatacggtat cggtgtttca atgtattcag
     3001 gatctgttat tcagacagat acaaatgtat atgtaatgaa gaatggtgca tttaatagaa
     3061 atgtcggtac aaaacctaat gaatttgcaa ctcgccagta ttttggagta gacggtcagt
     3121 ttagtattgc atccgatctg ggccttactc aaatccgtgc tgaatatatc acaggtacac
     3181 aacccggagc tgccggaagt tcggcaagtc ctaatggttt tgatccaaca gcttctacat
     3241 ttacggctgc tcctacttat atccgtaatt tcagcggtgg ttatgtaaac ttcgtgcagg
     3301 atattgcaga tacaaaacac tctatcgtag tgaaatatga ctggtatgat ccgaatacat
     3361 ccgtagccgg agataaagtt ggggttgcag caaaaacagg taaggcagat atggcttatt
     3421 ctactttagg gctgggttac atgtatcgct tgaataacaa cgttcgctta atggcttact
     3481 acgatatggt ttcgaacgaa tcaacaaaag taaaaggcta tttcaaaaat gtaaatgaca
     3541 atgtggtaac tgtacgttta caatataaat tctaagacag tttttagtat atagtttata
     3601 gttaatagaa aaacaagatt ttaaaagaat aacaaaatga aaaaacttat tttatctctt
     3661 atgatggttt gcgcattagc tccatcgttt tacgctcaga aaattaaagg tagcgacact
     3721 gtgctgccat tggcacaaaa agaagccgaa gtattcggaa agaaaactgg caaatcggtt
     3781 actgtaatcg gtggtggtag tggagttggt attgcagctt tgctggaagg tactactgat
     3841 atcgccatgt cttcacgcaa aatgaaattc gacgaaaaag tgaaatgtca ggaagccgga
     3901 aaagcaatta cagaaaaaat tattgcttat gatgcattgg ccgttattgt aaacccggga
     3961 aaccctgttt caaaactaac acgtgcccaa ctggaaggta tctttactgg taaaattacc
     4021 aactggaaac aggtgggtgg agccgatttg aaaattattc cttactcacg cgaaacaagc
     4081 tcgggaactt acgagttttt caaagaacac attttgttga acaaaaacta tgtaaactca
     4141 atcctgagca tgcctgcaac aggtgctatc gtacagtcgg ttagccagac aaaaggggca
     4201 atcggttatg tagggttggc ttatctcgaa aaaaatgtga aagctttaca ggtatctttc
     4261 gacggtaaaa cgtatgtggc accttctatg gcaaccgcaa aaaacaaaac ataccctgta
     4321 atccgtccgt tgttcttcta ctacgacaaa aaactggaaa gcaaaaatgc accgctggta
     4381 agctttgtat tgtcagccga aggtcaggga attgttgaaa aaattggcta tgtgccggtg
     4441 aagtaaaaaa gtttatttac ggataacggg gtggctctaa gtcaccccgt tattacaaga
     4501 aacctcttct gaatcaaatt tattatatat tgagcgggtg actcgaagtc acccgctcaa
     4561 ttcaaaaagc cgcctctgaa tcaaatttcg gtggcggttt tttgtatctc aaaatgcctt
     4621 taaacaaaga aatagtaacc caattgtcac acggctttat ttccgttgaa acaggtatga
     4681 agtaattttg cgtcataaaa actaagacgt aaaattagat gaaaccatta tttttttccc
     4741 gacttgtatt tactttcctt gcagtctcat tttcaatcag ccttttttcc cagaatagta
     4801 ttgaaggacg tattaccgat aaaaaaatgc aggaaccgct aacaggtgcc accatattga
     4861 ttgaaagcac taaaaaaggg actacagccg atatagatgg aaattacaaa ttcaaagacc
     4921 tggctccggg caaatacacg ctcgtagttt cttacgtttc gtataatccg cagcgcattc
     4981 ccgatgtgaa agtggaagca ggtaatacca ccacgcaaaa tattgaactg gatgatgcgg
     5041 cccttcagtt acaaagcgtg gaagtggtgg cacgacgccg gacagatacc gagctctcca
     5101 tgataaaaag cgttcgctcg tcggtgcagg ttgttagcgg ggtatcgtcg caacaaattg
     5161 gtaaaacact cgaccgcgat gcctcggaag tggtgaaacg cgtgccggga gttaccattc
     5221 aggataaccg ctttattgtg gtacggggac tgaaccagcg ttataacaat gtgtggctga
     5281 acaatgccgc tacgccaagt agcgaaacgg acgtaaaagc attctcgttc gatgccattc
     5341 cgagtaatat gattgataac ctgatgattt acaaaaccgg atcgccggaa cttgcggggg
     5401 aagcaaccgg cggatttatc aagatattta cgaaaaatat tcccgatgag aattttctta
     5461 cagccgaata cggaatcggt tacaacgagc aaactacttt caaagatacc taccgcctga
     5521 acggttcgcc gcttgatgtg ttggggttag gagccggagc acgcaatatc ccttccggtt
     5581 ttccggcgaa tctgggctta tcatctattg atcagcgaga tgcgtatgca ttgaaactga
     5641 gcagtagctg gattgcacaa cgacatacgg ccttgccaaa tcagaaatta tctgctgcct
     5701 ttggacgaaa atgggcgttg gaaaacggag ctaaactggg gaccatcacc tcgctgaact
     5761 acaacaatac cttcagcacc cggagcaata tgaaaaacta catgtacgag cgcttcgatg
     5821 aaacaaccga aacaccggtt tatctgtata agtataatgc cgacatttat agtaatgaaa
     5881 gccgggtagg actgatgcat aactgggcat acgagtcgaa agacggaaca cgcttggaat
     5941 ttaaaaatat agtaaaccag attggtaccg ataaaacggc caacacgtat ggatggaaca
     6001 attaccgaca gggtaatttc aaatacttca gcaatcagta ttcaaaccgg acgacctatt
     6061 ccggccaact aagcggaaac cataaattgg atgagaaaac aaatgccaaa ctggattgga
     6121 acgcgggttt tgcgtatgct aatcgcattg aaccgaaccg ccagaactgg agcatgaaag
     6181 aaaacatgga tggtgtttac cagtttatgt tgccaactgt tggaagtatc aacgaacttg
     6241 gtcggttata cctgaccaac cacgaatatg tgaatacggc tgctgtcaat tacgaacaaa
     6301 aactgatgtt gggaacattg gcttccacgc tgaaatcggg tggctatttc gagtataaaa
     6361 cccgcaatta tgcggagcga agcatttgtt acaaagctac gaacagcggt ttgtacagtg
     6421 atgatgaaat aaatgcactt aacttcgaaa cgttatttac cgaaccttac ctgggacaaa
     6481 acaaagtgat taccctcgac gagcaaacca atgtggccaa tacctacaat gccaataatt
     6541 tgttgggtgc cggatatctg gctatcaatt tgcccgttgg taaattcaat atttacggcg
     6601 gtgtgcgtgg cgaatacaac cggttgatgc tgaatggata ttacaatgcc aattcgccgg
     6661 taaaggtgga tgagccggct ttcaatctgt tcccatcgct taatacgtct tacaatatca
     6721 gtgaaaaaag cctgttgcgc gtagcttatg cacaaaccat caaccgcccg gaattccgtg
     6781 aagtttcacc attgagctac tatgatttta cggagaaaaa ctccgtgcgg ggtaatccgg
     6841 atttgaagga ttgctctatt cggaatgtag atttgcgttt cgagcattac ccaacgccta
     6901 acgagacttt ttcggtagcg gctttctaca agcatttcag taaccccatt gaaatggtaa
     6961 gcgtgggaac cggttccagc ttttctttcg aaaacgccct tggagcaacc aattacggat
     7021 tggaactgga actgaaaaga tcgttggaaa ccatgatcgg gcttaagaat tttaccctga
     7081 gcttaaacgc atcttatatt tatagccggg tggagtttgc gaatgttgaa actgaacgcc
     7141 cccgtccgct tcagggacaa tcacctgttg tggtgaatac ggccctgttt taccaaaacg
     7201 ataaactggg cttgtcgtca gcgctcatgt acaacgtgat gggcaaacgc attgtggtgg
     7261 cagcacagct gaatcagggg caggtgataa ttccggatat ttatgaaatg ccgcgccacg
     7321 tggttgattt ctcgctcaat aaaagactgg gtaagaaact tgaactgaaa ttcggtgtaa
     7381 aagacttgct ggctcaaaac tttacgactc aacagactta caaatacctg aaagatggag
     7441 tttcaaaatc a
//
LOCUS       DATDNM010000699         3728 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_511341, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000699 DATDNM010000000
VERSION     DATDNM010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3728
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511341"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..845
                     /locus_tag="VI413_11815"
     CDS             <1..845
                     /locus_tag="VI413_11815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007841140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 97 catalytic
                     domain-containing protein"
                     /protein_id="HEY6915355.1"
                     /translation="LWTVASTLMKYPHKYLDSISSWGAAGVKIDFFDRDDAQIMPQYE
                     ELAKACAERKLLVDFHGCSKPTGLNRAYPNILSYEAVRGMECSKWDTSTNPDYRLQFI
                     FSRMLAGPIDYTPGSMRNSNLKNFKPIDPGLPMSLGTRCQELAEYVVINSSLVMLADS
                     PDEYRKYPDILKFLSDVPASWDDTKVLSAKYGEFAVVAKRKGSEWFVGGMTNWNQRDI
                     TFDLSFLTSGKKYKAEIFRDGTDANQNANHYVFETKEVKSTSRMTIHMANGGGVALKI
                     SLVK"
     gene            876..3116
                     /locus_tag="VI413_11820"
     CDS             876..3116
                     /locus_tag="VI413_11820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007484510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 97 catalytic
                     domain-containing protein"
                     /protein_id="HEY6915356.1"
                     /translation="MNSHTNKISIFLFFTLFCFQHIMAVDYDVASPDRNFKITLHVDN
                     GTQYEVIYGQTQLISSSTIGMNLQDGTVVGKGTIKSVERNFVDNVLPVLIGKNKTLQE
                     RYNELIVHYNENYDLVVRAYNEGVAYRFVTAFSNSIIVKSEDAIFNFAGNPKVYFPEA
                     TTLDHWEKAYTLYNSVNDLTSNQFAVTPILFSYPNTTYKVAITEADNSDYPGLYIQSN
                     GTNSMKGMWAHYPDSVSDPTNVYSNHAPVTRFNYIANTTGTRSFPWRVIIVSNDDKSL
                     LNNELVYMLAAPLKLADVSWIVPGKSSWEWWHKAMLTADGSANSALGIPANGNANLGL
                     TLYKYYVDFAAANHIEYMTLDAGWSESYISSLCTYAKSKNVKIMVWTWASNALETPNW
                     VAKMKRYGVSGAKIDFFQRNDQIAMNWGARLAQELANQKMVGIFHGCPVPTGLNRAYP
                     NILNFEAVLGEEEDFWRRGSSPDYHVLFPFMRSLVGPEDYTPGSMRNKTERQFYPIDQ
                     PNIVPFSQGTRAHELSMYVIFDQWLGFLSDAPTEYVKYPDILDFLSKVPTVWDKTVPL
                     DAKLGEYILTAKQKGTDWYVGGMSSWIARDIQVDFSFLKPDVQYKATILRDDDTSGDY
                     PTRYVSEQIDVTSNTKLTLKMAKGGGFAIRLAENEANGLPDLKKKPTISVSIDKVNKS
                     INIYSTEIIRSVDIYNLSGQLVLSENHNEDNSFTKQIDISKMTRGTFIIKVQSNDGIS
                     SSKFIN"
     gene            3135..>3728
                     /locus_tag="VI413_11825"
     CDS             3135..>3728
                     /locus_tag="VI413_11825"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HEY6915357.1"
                     /translation="MKTNYFFKHALLIVALFGFSGIFAQTAKTPNFVEIDRPVVGTSG
                     MDSLSFSFESGAAWGDYNNDGFLDLITAGVSNNWAKITMFYKNNGNGTFTKVTHPFPN
                     LDAANITWFDYNNDGNLDLFLAGQDDLGKYSTLYKNLGAAGNYEFEEVFQGTFEYVNN
                     GGGNRANRYVIAGDVNNDGWMDIYLQGENESGRHAFLY"
BASE COUNT         1152 a          642 c          816 g         1118 t
ORIGIN      
        1 ttttatggac tgtggcttca acgctaatga aatatccgca caaatatctc gattcgataa
       61 gcagttgggg tgcagccgga gtaaaaattg actttttcga ccgcgacgat gcccaaatca
      121 tgcctcagta tgaggaactg gcaaaagctt gtgctgaacg taaattgctg gttgattttc
      181 acggttgcag caaacccacc ggtttgaacc gcgcctatcc gaatatcctt tcgtatgaag
      241 cagttcgcgg catggaatgt tccaaatggg acacttctac taatcccgat taccggcttc
      301 agttcatttt tagccgaatg ttggctggtc ctatcgatta tactccgggc tccatgcgaa
      361 attccaatct caaaaacttc aaaccgatag acccgggatt acccatgagt ttgggcactc
      421 gttgccagga actggctgaa tatgtggtca tcaacagttc gttggtaatg ttggctgatt
      481 cgcctgatga atatcgcaaa tatccggata ttttgaaatt cttatcagat gttcctgcaa
      541 gttgggatga cacgaaagtg ctttcggcca aatatggaga atttgctgtg gttgctaagc
      601 gcaaaggcag tgagtggttt gtgggtggca tgacaaactg gaatcaaagg gatattactt
      661 ttgatttgtc atttctgact tcaggaaaaa aatataaagc agaaattttc agagatggaa
      721 ctgatgcaaa tcagaatgcc aatcattatg tttttgaaac aaaagaagta aaatcaactt
      781 ctagaatgac tatacacatg gctaacggag gtggtgtggc tctaaaaatt tctctggtaa
      841 aataaaacga acacgtatac aatacatata gaatcatgaa ttcacacacg aataaaataa
      901 gtatatttct atttttcact cttttctgtt tccagcatat aatggcggtg gattatgatg
      961 tggcatcgcc tgatagaaat ttcaagataa cgcttcatgt tgataacggg acacaatatg
     1021 aggttattta cgggcaaaca caactgattt cttcgtcaac aattggaatg aatcttcagg
     1081 atggaacggt tgtgggaaaa ggtaccatta aaagtgtgga aagaaatttt gttgataatg
     1141 tgcttccggt tttgattggc aaaaacaaaa cattgcaaga gaggtataat gaattaatag
     1201 ttcactataa tgaaaactat gatttggttg tcagggctta caatgaaggc gttgcctatc
     1261 gttttgtaac tgcattttca aatagcatta ttgtgaaatc ggaagatgca atctttaatt
     1321 ttgcaggtaa cccgaaagtg tattttccgg aagctacaac tttagaccat tgggaaaagg
     1381 cgtatactct ttacaattcg gttaatgatt tgacttcaaa tcaatttgcg gttacgccaa
     1441 ttttgttcag ctatccgaat actacttaca aagtggctat aaccgaagcc gacaattcag
     1501 attatcccgg tttgtatatt caaagcaatg gaacaaattc gatgaaaggg atgtgggcgc
     1561 actatccgga ttcagtaagc gatccgacca atgtttattc caatcatgca ccggttactc
     1621 gatttaatta tattgccaat accactggta cccgctcatt tccctggcgt gtaattattg
     1681 tttctaatga tgataaatca ttgttgaata atgagttggt gtatatgctg gccgctccac
     1741 ttaagttagc agatgtgtcg tggattgttc ccggaaaatc ttcgtgggaa tggtggcaca
     1801 aagccatgct taccgcagat ggtagcgcta attcagcatt gggaattcct gcaaacggaa
     1861 acgctaatct gggtctaaca ttatataaat attatgtcga ttttgctgcg gcaaaccata
     1921 ttgaatatat gacattggat gccggttgga gtgaaagtta cattagttca ctttgcacat
     1981 atgcaaaatc caaaaacgtc aaaatcatgg tttggacctg ggccagcaat gctttagaaa
     2041 ctccaaactg ggttgcaaaa atgaaaagat acggtgtgtc gggtgcaaag attgactttt
     2101 ttcaacgaaa tgaccagatt gcgatgaatt ggggtgctcg actggctcag gagctggcaa
     2161 accaaaaaat ggttggtatc tttcatggct gccctgtgcc tacaggtttg aaccgcgctt
     2221 atccgaatat tctgaacttt gaagctgtgt tgggtgagga agaagatttc tggagaagag
     2281 gctcatcgcc cgattatcat gtgctgttcc cttttatgcg atcgttggtt ggaccggaag
     2341 attatacgcc gggttcaatg agaaataaaa ctgaaaggca gttttatccg atagatcagc
     2401 ctaatatcgt cccgtttagt cagggaacaa gagcgcatga attatccatg tatgtcatat
     2461 tcgatcagtg gcttggcttt ttaagcgatg cgcctaccga atacgttaaa tatccagaca
     2521 ttctggactt tttgtctaag gttccaaccg tatgggataa aacagttcct ttagatgcta
     2581 aattgggaga atatattctt actgcaaagc aaaaaggcac cgattggtat gttgggggaa
     2641 tgagcagctg gattgccagg gatattcagg ttgatttcag cttcctgaaa ccggatgttc
     2701 aatacaaagc cacaatctta agagatgatg atacttcggg agattatccg acacgctatg
     2761 taagcgaaca aattgatgta acttccaata cgaagttgac tttaaaaatg gctaaaggag
     2821 gaggttttgc cattcggtta gcagaaaatg aggcaaatgg tttaccggat ttaaaaaaaa
     2881 aaccaacaat ttcggtttct atcgataaag tgaataaatc aattaatatt tattcaacag
     2941 aaattatccg gtctgttgat atttacaatt tatcaggaca actggtttta agcgaaaacc
     3001 ataatgaaga taattctttt acgaaacaaa tagacatttc taaaatgacc aggggaactt
     3061 ttattataaa ggtacaatcc aatgatggta taagttcttc aaaatttatt aactaactac
     3121 taatttaatg tattatgaaa acaaattact tttttaaaca tgctctttta atagtcgcat
     3181 tgtttggttt tagtgggatt tttgcacaaa ctgcaaaaac tccgaatttt gtagagatag
     3241 acagacctgt ggtaggcacg agcggaatgg atagcctttc attttcgttt gagagtggag
     3301 ctgcctgggg cgattataat aatgatggat ttttggacct gataactgct ggtgtatcaa
     3361 ataactgggc taaaattacc atgttttata agaacaacgg taatggaaca tttactaaag
     3421 tgactcatcc gtttccaaat cttgatgcag ccaatattac ctggtttgat tataacaatg
     3481 atggaaattt agatttgttt ttagccggac aggatgattt gggtaaatac tcaactttat
     3541 ataaaaacct tggagctgct ggtaattacg aatttgaaga agtattccaa gggacatttg
     3601 agtatgtaaa taatggtggt ggcaaccgcg caaaccgtta tgtaatagca ggtgatgtaa
     3661 ataacgacgg ttggatggat atttaccttc agggtgaaaa tgaaagcgga agacatgctt
     3721 tcttgtat
//
LOCUS       DATDNM010000700         3755 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_831739, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000700 DATDNM010000000
VERSION     DATDNM010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3755
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_831739"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2767)
                     /locus_tag="VI413_11830"
     CDS             complement(<1..2767)
                     /locus_tag="VI413_11830"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6915358.1"
                     /translation="MKIKQTDKTIFLVDDVVENLQLLTKMLTESGYRIRAAKTGKEAI
                     ASIQTEIPDLILLDVKLPDINGFEVCRLLKEDKRTHHVPVVFLSGLSDTADKLEGFSA
                     GGVDYITKPFISEEVLIRVNTHIEMSSLRLELENVALNLKEKNKLLEEEAAERKLAAE
                     RLSESYRKLEDSQKTTVSILSDLQQEMNLRLKQEEALRQSEERFQLLFYKTNLCYQTL
                     DSGGNILDVNSQWLDTFGFERDEVVGKWFGNFIAPEYLSCLKEHFASFKAHGHVQRDF
                     EIMHKDGRSFFVTLEGSIECDFNGHFKQTHCVLQDVAESKRVNELLRRNREDFKELFD
                     RAPVGYHELDAEGRIVRINETELEMLGYSLSEIVGEYLWKFAVNETVSYRSITSKLAG
                     KPGKTDSYERDYIRKDGRIISVLVTDKILKTDDGKIIGIRSNVQDITEQKLVQKALLK
                     SQSLFSQAFNGSPAPMTIASQPDGKYIEVNESFLRLTEYSHDEVIGKTGDSLNLIDSA
                     ESAKIFNHLKKTGYLHNVEVFARSKSGKTLRLLTSIENTELAGEACTLSTMLDITERV
                     MAEEALRKSQIQHRAIIHTAMDGFWLVDKNGKILEANDSYSKMSKYSIQELLQMSVSD
                     LEAIEKQEDIEQRIKRILDNGSDRFETRHKRKDGSLFDLEVSIQKQGDSDNVVAFFHD
                     ITARKQADDALRKSEEKFKKAFMTTPDCVNINRLEDGMYVGLNPGFTNIIGYTEQEIL
                     GKTSLEKSIWYDVADRKRWVAELNANGEIRNFETQFRTKNGNVIDGLVSASIIELDGV
                     KHVISITRDITERKTVEKTLKESEEKFRNIFEYSIVGKSITSFDGKLSVNKAFSNIVG
                     YSEKELSKLTWRDITYEDDIELKEKEIELLVKGVKKFTKFESRFVHKNGNIVWTDLSA
                     VLQKDNDG"
     gene            complement(2811..>3755)
                     /locus_tag="VI413_11835"
     CDS             complement(2811..>3755)
                     /locus_tag="VI413_11835"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6915359.1"
                     /translation="KRTNEDAFLQIEVKDTGVGIAEEEKTKLFQDFVQTDSGKKSKTG
                     SGLGLAISQDYAKLMGGEITVDSILGQGSTFRALMKIQLAGDDCLISEADRRQVVGLE
                     KDQTIPRILVAEDNSENRFLLVRTLKSAGLDVREAINGKEAVEMAETWNPDFIWMDVR
                     MPVMDGLDATRLIKASDSGSHVRIVALSAHVLGEERKEIYDAGCDGFVAKPFKENEIF
                     DSLEKFLALKFKYAAVPMAKDTAGKLSDSALSLEKLDADFCAELNTAVIQANAMKIGE
                     LAQKIEQQDKALANALKKCARNFDYEPIRIALKVRVGN"
BASE COUNT         1019 a          913 c          552 g         1271 t
ORIGIN      
        1 ttccatcatt atctttctgt aaaacagcac taagatccgt ccatacaata tttccgtttt
       61 tatgaacaaa tctgctttca aatttagtaa attttttgac tcctttgact aataattcaa
      121 tttctttttc tttcagttca atatcatcct cgtaggtgat atcccgccag gttaatttac
      181 taagttcttt ttccgaataa cctacaatat tactgaatgc tttattaacc gatagttttc
      241 catcaaatga ggttattgac tttccaacga tggaatattc aaaaatgttt ctgaatttct
      301 cttcgctttc tttcagtgtt ttttccacag ttttccgttc tgtaatatca cgggttatgc
      361 tgataacatg tttcactcca tccagttcaa taatggaggc cgacaccaat ccatcaatta
      421 catttccatt ctttgttctg aattgtgttt caaaattccg gatttcacca tttgcattaa
      481 gttcagccac ccatcttttt ctgtcagcca catcatacca aatacttttt tcaagggacg
      541 tttttccaag gatttcttgt tctgtataac ctataatatt tgtgaatccg gggttcaaac
      601 ccacatacat tccatcttcc aaccgattta tgttcacaca atcgggagtg gtcataaatg
      661 cctttttaaa tttctcttca cttttcctca atgcgtcatc tgcctgtttt cgagcggtaa
      721 tatcatgaaa aaatgcaacc acattatcgc tatccccttg tttctgtata cttacttcca
      781 aatcgaaaag actgccatcc ttccgtttat gacgcgtttc aaaacgatca gaaccattgt
      841 ctaaaattct tttaattcgt tgttcaatat cttcctgttt ttcaatagct tccaaatcac
      901 ttactgacat ttgcaaaagt tcctgaatac tatatttact catcttactg tagctatcgt
      961 ttgcttcaag aattttacca tttttatcca caagccaaaa accatccata gccgtgtgaa
     1021 ttattgccct gtgctgtatc tggcttttcc taagtgcttc ttcagccatt accctttcgg
     1081 taatatcaag catggtggac aacgtacagg cttcacctgc aagctcggta ttctcaatgg
     1141 aagtcaacag tcttaaagtc ttaccggact ttgaccttgc aaagacttca acattgtgta
     1201 agtatcctgt ttttttcaaa tggttgaaaa ttttagcact ttcagcagaa tcgatcaaat
     1261 tcaaactatc accggttttc ccaatcacct catcatggct atattcagtc aatcgtaaaa
     1321 aactttcatt cacctcaata tactttccat ccggttggct ggctatagtc ataggtgcgg
     1381 ggctaccatt gaatgcctgc gagaaaaggc tctgtgattt caacaaggct ttttgcacca
     1441 gtttttgttc ggtaatatcc tgaacgtttg atctgatgcc aataattttg ccatcatctg
     1501 ttttaagtat cttgtctgta acaagaactg atattattct cccatctttt cttatataat
     1561 cccgttcgta ggagtcagtc ttacccggct tccctgccag ctttgaagtg attgaccggt
     1621 acgaaacagt ttcattgact gcaaacttcc atagatattc tccaacaatc tccgacaaag
     1681 aatagccaag catttccagt tctgtttcat taatcctgac aattcgtcct tcggcatcca
     1741 attcatggta gcctaccggc gccctgtcaa acaattcctt aaaatcttca cgatttctac
     1801 ggagaagttc attaacccgt ttgctttcag caacatcctg caatacgcag tgcgtttgtt
     1861 taaagtgccc gttgaaatca cattcaatgc ttccctctaa agtcacaaaa aaactgcgac
     1921 catctttatg cattatctca aagtcgcgtt gaacatggcc atgagcttta aaactggcaa
     1981 aatgttcttt caaacagctc aaatactcgg gtgctataaa gtttccaaac catttaccaa
     2041 ctacctcatc ccgttcaaaa ccaaaagtat ccaaccattg tgaattaaca tccagtatat
     2101 ttccaccgga atcaagcgtc tgataacata ggtttgtttt ataaaacagc aattgaaacc
     2161 gttcttcact ctggcgcaaa gcctcttctt gctttaaacg caggttcatt tcctgctgca
     2221 aatcgctcaa tatactgaca gtagttttct gactatcttc taatttacga tacgattcag
     2281 aaagcctctc agcagcgagt ttacgttctg cagcctcctc ttcaagcaat ttgttttttt
     2341 cctttaaatt cagggcaaca ttttccagtt ctaagcgcaa agaactcatt tctatgtgtg
     2401 tatttacacg aattaagact tcctcactaa taaaaggttt tgtaatataa tcaacacctc
     2461 ctgcactaaa gccttctaac ttatctgcag tatcggataa tccacttaga aaaaccacag
     2521 gaacgtgatg ggttctttta tcttctttta atagcctaca aacctcaaaa ccattaatat
     2581 ccggcaattt cacatcaagc aatatcaaat ccggtatttc tgtttgaatt gatgcaatag
     2641 cttccttgcc tgttttggct gcacgaatcc gatagccgct ttcagtaagc attttggtaa
     2701 gcagctgcag attttcaacc acatcgtcca ccagaaatat tgttttgtcg gtttgtttta
     2761 ttttcataga ttttttctat tacttaagat tcaggtttcc taaaataata tcaatttcca
     2821 actcttactt ttaaagctat tcgtataggt tcataatcaa agttccgcgc acatttcttt
     2881 aatgcgttgg caagggcctt atcctgctgt tcaatttttt gagccaattc tccaatcttc
     2941 attgcattag cctgtatcac agccgtattt aattctgcgc aaaaatccgc atcaagcttt
     3001 tctaaactca atgcggaatc tgacaatttt ccggcagtat ctttagccat cggcacagcg
     3061 gcatacttaa atttcaatgc cagaaatttt tccaggctat cgaatatttc attttcttta
     3121 aatggcttag ctacaaaccc atcgcaaccg gcatcgtaaa tttcctttcg ctcttccccc
     3181 agcacatgtg ccgagagggc aactattctg acatggctgc cgctatccga agctttaata
     3241 agccgggttg cgtcaagtcc atccatcacg ggcattctca catccatcca tataaagtca
     3301 ggattccatg tttcagccat ttccacggcc tcttttccgt ttatagcttc acgcacatcc
     3361 aaaccagcag attttaaagt ccttacaagc aaaaaacgat tttcgctatt atcttctgca
     3421 accagaattc gtggaatcgt ttgatccttc tctaaaccaa ccacctgcct gcgatcggct
     3481 tccgatatca agcagtcatc acctgcaagc tgaatcttca tcagggcacg aaacgtactt
     3541 ccctgcccca atatactatc aacggtgatt tcaccaccca tcagtttggc ataatcctga
     3601 ctgatagcaa gccccaaacc acttcctgtt ttgctttttt ttccgctatc cgtctgtaca
     3661 aaatcctgaa aaagcttagt cttctcttct tcagcaattc caacacctgt gtcttttact
     3721 tctatctgca gaaatgcgtc ttcattcgtt ctctt
//
LOCUS       DATDNM010000701         2434 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1151913, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000701 DATDNM010000000
VERSION     DATDNM010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1151913"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..139
                     /locus_tag="VI413_11840"
     CDS             <1..139
                     /locus_tag="VI413_11840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005784174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEY6915360.1"
                     /translation="SYLAIDQGPIAVMIENYRSGLLWKLFMSNPEIHTGLQKLGFNTE
                     K"
     gene            163..>2434
                     /locus_tag="VI413_11845"
     CDS             163..>2434
                     /locus_tag="VI413_11845"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6915361.1"
                     /translation="MRRKITLFLFVALTTASTLWAQNLSVSGVVVDKNTGETLIGASV
                     VEKGANNRAITNIDGAFSLSVPDGATLGFSYIGYIGQEVVVKNDAKLRIQLVPDSKSL
                     DEVLVVGYGTKKAGAVTGSVIQVKSSDILKTPAQSAIQSIQGKAAGVNIVATDEPGKS
                     PTVMIRGINTVLGGRSPLYVIDGIEATSLNGLSANDIATIDVLKDASSLAIYGNKAAS
                     GVILVTTKKGTKGAIKVNYDGNVGFKGMLKTIDMADSYRFAYYQNFASGRSKFDTNQP
                     YNTNWLKEITRTGVTTNNAVSLSGGEENVNYYFGISRYTEQGILKGTDYNRTNVISKN
                     EYKLFNSRLKITQTFNLSVTNNVPKPLSAFTAAYKQSPIMPVKYADGKWGMPFLDGET
                     AQIGVTGDKFNNVPNPVAMLGYNDEKNQNVTLFGTASAEYKIYKDLKFNSNFGATFDS
                     GKGYTYTPNEENWFSQNPTGTEFPNKYYSTLQQRRSNFYIWNWDNYLTYNKDFGKHNL
                     SAVLGITRSTSRTTQDLSATRYNVPPQSNYWSLNLSKNDDKSAPGTLISNTSQTPLVN
                     VGYFGRVDYDYNNKYLLTASLRRDGISDFQGTNKWGMFPAISGGWVISSEDFFEPLNS
                     VVDYVKLRGGYGEIGNGNACPSVNQVLFQNGATYPFGLGETIYPGSYVPYAVDPNLTW
                     ETTIEFGGGIDFRLYRQRLSGSIDLYIRKTDNVILPVKLPTVLSPDPVFLNAGAVQNS
                     GLEMILNWEDKIGKDIT"
BASE COUNT          769 a          471 c          519 g          675 t
ORIGIN      
        1 cagttacctg gctatagatc agggtccgat tgccgttatg attgaaaatt accggagtgg
       61 tctgctttgg aaattgttta tgagtaaccc ggaaatacac accggattac aaaaactggg
      121 atttaataca gagaaatgag ttaaccgaaa aatcacgata ttatgagaag aaaaattacc
      181 ttatttttat ttgttgcgct tacaacagca agtacacttt gggctcaaaa cctgagcgta
      241 agcggtgtgg ttgttgacaa aaataccggc gaaacattaa tcggagcttc tgtagtcgaa
      301 aagggagcaa ataacagagc tataacgaac attgatggcg cttttagtct ttctgttcca
      361 gacggagcaa ctctgggctt ctcgtatatt ggctatattg gccaggaagt tgtcgtgaaa
      421 aacgatgcaa aattgcgtat tcaacttgtg cctgattcaa aatcgctgga tgaagtactg
      481 gtggtaggtt atggtacaaa aaaggcaggt gcggttaccg gatctgtaat tcaggtcaaa
      541 tcaagcgata tacttaaaac gcctgcccag tcggcgatac aatctattca ggggaaagct
      601 gccggtgtga atattgttgc aacagatgaa cctggcaagt ccccaacagt tatgattcgt
      661 ggtattaata ctgtgcttgg aggccgaagt cccctctatg tgattgatgg aattgaagca
      721 acaagtttaa atggtttgag tgccaatgat attgcaacaa ttgatgtact aaaagatgcc
      781 tcctcattag ctatctatgg taataaggcg gccagtggcg taatactcgt aaccacaaaa
      841 aaaggaacta aaggtgcaat taaagtaaat tacgatggaa atgtcggctt taaaggcatg
      901 ttgaaaacca tcgatatggc cgattcgtat cgttttgcat attatcagaa ttttgcttcc
      961 ggcagatcga agttcgatac caatcaacca tataatacca actggttgaa ggaaataaca
     1021 cgcaccggag taactacaaa caatgcagtt tctctttcgg gaggagaaga aaatgtcaat
     1081 tattattttg ggatatcccg ttataccgaa cagggaattc tgaaaggaac agattataac
     1141 cggacaaacg ttatcagtaa aaacgaatat aaactattta atagtcggct aaaaataact
     1201 caaactttca atctgtcggt taccaacaat gttcctaaac cattgagtgc ttttacagcc
     1261 gcctataaac aatctcctat catgcctgta aaatacgctg atggtaaatg gggaatgcct
     1321 tttttagatg gcgaaacagc gcagattggt gtaaccggtg ataagttcaa taacgttcca
     1381 aaccctgtag ctatgctggg ttacaatgat gagaaaaatc agaatgtaac tttattcgga
     1441 accgccagtg ctgaatataa aatatacaaa gacctgaagt ttaactctaa cttcggtgct
     1501 acttttgatt cgggcaaagg ttatacctac acaccgaacg aagaaaactg gtttagccag
     1561 aatccaaccg gtactgagtt tccaaacaaa tattacagta cattacaaca gcgcagaagc
     1621 aacttttaca tttggaactg ggataattac ctgacttata acaaagattt tggtaaacat
     1681 aatctgtctg cggtacttgg gatcacccgt tccacttccc gaacaactca agatttatcg
     1741 gcaacacgtt acaacgtacc tccacaatca aattactgga gcctgaatct ctcaaaaaac
     1801 gacgataaat ccgctccggg taccttgatt tcaaatacca gccaaactcc gctggtaaat
     1861 gtaggatact ttggtcgggt ggattatgat tacaacaata aatatttact gacagcctct
     1921 ctcaggcgag atggtatcag tgattttcag ggcactaata aatggggaat gtttcctgca
     1981 atctccggcg gctgggtaat tagcagtgag gatttctttg aaccactgaa ctcagtagtt
     2041 gattatgtga aactaagagg tggttatggc gaaattggta acggtaacgc ctgtccatca
     2101 gtaaatcagg tattatttca aaatggtgca acctatccat tcggccttgg tgaaaccatc
     2161 tatcccggtt cctatgtccc ttatgccgtt gacccaaatc tcacctggga aaccaccatt
     2221 gagtttggcg gtggtattga tttccgtttg taccgtcaaa ggttatccgg atcgattgac
     2281 ctttatatcc gaaaaactga caatgtaatt ttacccgtta aactgccaac ggtattatct
     2341 cctgatccgg tgtttttaaa tgctggagct gttcaaaaca gtggtcttga gatgatttta
     2401 aactgggagg ataaaattgg gaaagacata actt
//
LOCUS       DATDNM010000702         2511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_724749, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000702 DATDNM010000000
VERSION     DATDNM010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724749"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            208..1080
                     /locus_tag="VI413_11850"
     CDS             208..1080
                     /locus_tag="VI413_11850"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HEY6915362.1"
                     /translation="MKKSILLFLLSITCYSATQAQLLWKVSGNGLKHPSYLFGTHHLI
                     PIQFLDSVPGLYKAFNACDAVVGEIALNSIDATSRLEMAASMPNHTKMTDLLKGEKYS
                     TVDNELRAVLKLGLKDLSMMNPTLILSMYEMELYKKTTGITDDTQSDSYFQLVAAEKN
                     KKVVGLETVEQQINILFGNGSLERQADILYETIQHKDSALTDMIQLDKLYRAGKLNDL
                     VELSKGKGRKADFTDEEYTKLVDNRNADWMKKLPKLFNNSSCFVAVGTLHLGGKNGLI
                     KQLEKAGYHVKAVE"
     gene            1885..>2511
                     /locus_tag="VI413_11855"
     CDS             1885..>2511
                     /locus_tag="VI413_11855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006799020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HEY6915363.1"
                     /translation="MASTPTANAAKKEKMKKEKAGWITLFDGKTFTGWRGYGRADMPA
                     AWTIDNGAIKINGSGQGDDGKKDGGDIIFDKKFKNFELTFEWKVSKGANSGVFYLAQE
                     LPGKPIYESSPEYQVLDNANHPDARLGKNGNRQSASLYDLVPAVPQNSKPYGEWNTAS
                     IKVYKGTVIHSQNGKKVVKYRLWTDDWKKMVADSKFKNWENFLNAGGTN"
BASE COUNT          845 a          459 c          506 g          701 t
ORIGIN      
        1 tataaataaa gtcatagtat ttgtattggg tttcgcgatt tacaatcgcg ttaataaagc
       61 taacaacgcg gttacaaacc gcgaaaccca cataaaaaaa ctaaaaactc agagaccatt
      121 tcccaaaaag tactattaaa caggcttatt ttcatttaaa tatttctttt taagtatctt
      181 tgttcaaaat aaatcccaat cagaattatg aagaaaagca tcctgttatt ccttttatca
      241 ataacctgtt attcagctac gcaggcgcaa ctcctctgga aagtcagcgg aaacggactg
      301 aagcatccct cctacctttt tggcacgcat catctgattc ctatccagtt tctggacagc
      361 gtgccgggat tatataaagc ctttaatgcg tgcgacgcgg ttgtaggtga aattgccctg
      421 aacagtattg atgccacttc gcgactggaa atggcggcca gcatgcccaa ccacaccaaa
      481 atgaccgatc tgctgaaagg agaaaaatac tccaccgtgg ataatgaact cagggctgta
      541 ttaaaactgg gattgaaaga tctttccatg atgaatccca cgcttatttt gtcgatgtac
      601 gagatggaac tttacaagaa aacaaccgga ataacggatg acacacaatc cgactcttat
      661 ttccaattgg tagctgccga gaagaacaag aaagtggtag gactggaaac ggttgaacaa
      721 caaataaata tattgttcgg aaacggaagt ctggagcgtc aggccgatat attgtacgaa
      781 accatacagc acaaagacag cgccttaacc gacatgatac aattagataa actctacaga
      841 gccggcaagc tgaacgatct ggtagaattg tcaaaaggca aaggacggaa agccgacttt
      901 accgacgaag aatataccaa actggtggat aaccggaatg cagactggat gaaaaagctc
      961 ccgaaactct tcaataattc ttcctgtttc gtagctgtag gaactcttca cctgggtggg
     1021 aaaaacgggt tgatcaaaca attggaaaaa gccggatacc atgtaaaagc tgtggaataa
     1081 tcttctctcc tcccctcatt gagaattgaa aattatacta ttggaaattt ccatcaaact
     1141 cagtaaaaca gataattcta tcaaatggat tgtctgtttt actttttttt gttgacaatt
     1201 caaatttttt agtcgtattt tttgtttttc gaggctttgc aaaaagtgtt aggcttattc
     1261 attttatttt ttaggctttc aaaaaagttt caggctcaga aaactgtttt taatcacatt
     1321 cccaatggca ggggctggct ttttcaataa tcgggatgcc tacatttgta gaactaatca
     1381 acggagggca atcttagacc atcaggctat taagtttctt ttatgttttg ttgaaaataa
     1441 ttatcaaaaa taaacgcttt gttaattatg ttttttacct ttgagggcga aagggaaatt
     1501 tactttacat atttggatat aggagatatg taataaacaa aaatatataa tgtaaaaata
     1561 tgtgcaatta gatatatctc ggtgttaaca aacatacaaa aaaaataaaa ggacatattc
     1621 gaactttgac tctttagatt ataacaaata tggattatag gaaaattgta ttagacggtt
     1681 atttcgcatt gggtttcgcg attttcaatc gcgtatatcg tttttttttg aatgcgatta
     1741 aaaatcgcga aactcagtta aaaacccaac tttttctaat caaatcgatg ttaagaaaac
     1801 attaggtcgt tatgacgaca attattataa acaatcaaca aaatgaagaa aactatttat
     1861 ttaatcactg taatgctggc cgtaatggct tcgactccaa cagcgaatgc tgccaaaaaa
     1921 gaaaaaatga aaaaagaaaa agccggttgg atcacgttgt tcgatggaaa aacatttacg
     1981 ggttggcggg gttacggacg agccgatatg cctgcggctt ggacaattga taacggagcc
     2041 ataaaaatta atggctcagg tcagggtgat gacggtaaaa aggatggcgg ggatattatt
     2101 ttcgacaaga aatttaaaaa ctttgagttg acgtttgaat ggaaagtatc aaaaggagcc
     2161 aacagcggcg ttttctatct ggcgcaggaa ttgcccggta aacctattta tgagtcttcg
     2221 cccgaatatc aggttttgga caatgcgaat caccccgatg cccgtttagg taaaaatggt
     2281 aaccggcagt cggcatcgct ctacgatctg gttccggctg tgccacaaaa ttcaaaaccc
     2341 tatggggaat ggaatactgc ctcgattaaa gtatacaaag gaactgtgat tcactcgcaa
     2401 aacggaaaaa aggttgtaaa gtatcgcctc tggactgatg actggaaaaa aatggttgcc
     2461 gacagcaagt tcaaaaattg ggaaaacttc ctgaatgccg gtggcaccaa t
//
LOCUS       DATDNM010000703         2283 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_192424, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000703 DATDNM010000000
VERSION     DATDNM010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192424"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..1770)
                     /locus_tag="VI413_11860"
     CDS             complement(64..1770)
                     /locus_tag="VI413_11860"
                     /inference="COORDINATES: protein motif:HMM:NF024257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6915364.1"
                     /translation="MKNISVIIAGLSLFIFSLTGMCNTTHDSPTAVQKQATAANAVNL
                     SSSPELSSLANSWANEFGKLNPGVGVQVSDLNSQPAGTGQINLVTDDDPQAGNDQSWK
                     MMVARDAIVFIINANNPMLKEINLQGITADKLATLISDPANRNWDKMIANGQNAPVTV
                     YSIDSNPVKENIADFTGLVLSSFHVNSAATASEIISAVQKDQFSIGICKLTDVRDEST
                     NELVQGIKLLPVDKNKNGRLDSFENIYANMNAFTRGVWVGKYPHALCTGIYAVAASQP
                     TDKNTLSFLSWVTTDGQKLLNKSGYSDLMSAEIAANRTLLLGKANEPITNTVALAENK
                     PFLSNAWIVAILFLALSALVIAAVLRYGKKQKWNSAESELKASPILKEDTIIAPRGLY
                     FDKTHTWAFMEKDGNVKVGIDDFLQHVTGTLTRVIMKNTGEKVRKGDKILTIVKDGKQ
                     LSVYAPISGTIIQQNTSLVADSSLVNSSPYADGWVYLIEPNNWVREMRFLFMGEKYSE
                     WMEDEFIRLKDFFASSIKSKSPAFAHVIMQDGGELADHILADLEPEVWEDFQNKFINT
                     SR"
BASE COUNT          675 a          457 c          433 g          718 t
ORIGIN      
        1 tattcgtcga tctatgctca taatattggt ttttgggttt tagtctgtat gtttaattgg
       61 atattatctc gaggtgttga tgaacttatt ctggaaatct tcccatacct cgggttcaag
      121 gtctgccagg atatggtcgg caagttcccc gccatcctgc atgattacat gggcaaaagc
      181 cggggatttt gactttatgg aagaagcaaa gaaatctttc aggcggataa attcatcttc
      241 catccattcc gaatatttct ctcccatgaa taaaaaccgc atctcacgta cccaattgtt
      301 gggttcaatc aagtaaaccc atccgtcagc ataaggagaa ctgtttacaa gtgacgaatc
      361 tgccaccaaa gaagtgtttt gctgaataat ggttcctgaa ataggagcat aaacgcttaa
      421 ctgttttcca tcctttacga tggtcaggat cttatcgcct tttctgactt tttcacccgt
      481 atttttcatg attacccggg taagcgtgcc ggttacatgc tgcagaaaat catcgatccc
      541 cacctttaca ttgccatctt tttccatgaa tgcccaggtg tgggtcttgt caaaatacaa
      601 tcccctgggg gcaataatgg tatcttcttt caatatgggt gaagctttta gttcgctttc
      661 cgcgctgttc catttttgtt tttttccata tcttaaaaca gcagcaatta caagggccga
      721 aagtgccagg aaaagtatgg ccacaatcca tgcatttgac aggaaaggct tattttcagc
      781 cagagctacc gtattggtga tgggttcatt tgctttacct aaaagaaggg tcctatttgc
      841 agctatttct gcactcatca aatcactgta tccacttttg tttagcagtt tctgaccatc
      901 ggtagtaacc caggagagga aagaaagggt atttttatcg gtaggctgag aagcagctac
      961 cgcataaatg cctgtacaca aagcatgagg atatttacca acccataccc ctcttgtaaa
     1021 ggcattcatg ttggcataga tattttcaaa gctgtccagc cgtccgtttt tattcttatc
     1081 caccggaagc agtttgatac cctgaaccaa ttcgttggtg ctttcgtcac gaacatcggt
     1141 taatttgcaa attccaatgg agaactggtc tttttgtact gccgaaatga tttcgctggc
     1201 tgtagctgct gagtttacat ggaaagaaga taaaaccagg ccggtaaaat cagctatatt
     1261 ttctttaaca gggtttgaat caatgctgta aacagtaaca ggggcatttt gtccgttggc
     1321 aatcatctta tcccagttcc tgttggcagg atcagaaatt aaagtagcca atttatctgc
     1381 cgtgatgccc tgtaaattta tttccttcag catggggtta ttggcattaa taataaaaac
     1441 gatggcatca cgggcgacca tcattttcca cgactgatca ttgcctgcct gtggatcgtc
     1501 atctgtaaca aggttgatct ggccggtgcc tgccggctgg ctattcaaat cacttacctg
     1561 gacaccaacc ccggggttta atttcccaaa ttcattagcc cagctgttgg caaggctgct
     1621 caattccggt gaactggaaa ggttaacggc attggctgca gttgcctgct tttgaactgc
     1681 ggttggactg tcatgggtgg tattgcacat acccgtcaaa ctaaaaataa agagagacag
     1741 tcctgcgatg attactgaaa tgtttttcat gatagaggta tttataattg aacttttaat
     1801 atttccaatc cttgcttcca attaaaatat gaaagtcgaa ttgtatattt caattacaat
     1861 gccaatcttt ttaaatgaaa ttaactatca gtaatacaat taattaaaat aaattgaaca
     1921 aaatatataa aacgcataaa tgttgaaaaa atatacagta tttattcaaa aatacggtaa
     1981 ccggttagca tacaggaaaa taagccaatt gtataaaaca tatacaatga ttataaatgc
     2041 aacaatggca ggttgtaaga acctatcaaa cagatcaata gtaaattagt aatatgacca
     2101 ttattccttc ataatattat gaaaataagt tgaaattgga ttatgcccgt cctcagctga
     2161 attatttaag aaagcctatg gacatatggg tttgcttcta accttcttct atttcccttc
     2221 taaccatttt cagttataat acatatataa ttcgaatata atacatatat aatacataca
     2281 aat
//
LOCUS       DATDNM010000704         2359 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1580079, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000704 DATDNM010000000
VERSION     DATDNM010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1580079"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..996
                     /gene="yidC"
                     /locus_tag="VI413_11865"
     CDS             <1..996
                     /gene="yidC"
                     /locus_tag="VI413_11865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEY6915365.1"
                     /translation="GYLKSYSANMVVGFDPTGKQPTTFQLFFGPNQYKILNSFDKGVE
                     SDKELQLNKLIPLGWGIFGWVNRFVIIPLFNFFSQFISNFGLIILLMTIVIKLVLFPL
                     TYKSYMSSAKMRVLKPEIDEIHAKIPAEKAAERQKATMELYSKVGVSPLSGCIPSLLQ
                     MPLLFAMFSFFPASIELRQQSFLWAQDLSAYDSIMQLPFEIPFGFGSHVSLFCLLMTV
                     TNIIYTKLNMTNTATADQPGGAMMKWMMYLMPLMFLFMFNSYASGLSYYYFISTLISI
                     AQTYAIRGFVDEKKILAQLHAKRANNSKKPAKKGGFMDRLEKMQREQQKTIQKRK"
     gene            1080..2096
                     /locus_tag="VI413_11870"
     CDS             1080..2096
                     /locus_tag="VI413_11870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915366.1"
                     /translation="MKKTSSLIFFLGGVLILLGSCTKRSRFEIDTTKNRYEVKIHRFD
                     KDLLSLDTTNIKSGVDSLYAHYQEFLPVFTYNILDTTAKDTTAVCNLFRKFLSDKTYA
                     PVNKKVQQIYGGDITDIQVKISEAYTYIHHYFPEVELPEVYFFVSGFNSQVIMNDKFI
                     GLGTDFYLGNDFPLYKDLTYKYMIYNMRRENLASDLVSATLFRMFVMNSDENRLLDNM
                     LFRGKIMYLLSVFMPEEKPDILMGYSPDQWNWSKKYEKEIWAAIVDQKHLFSTDIQLI
                     HKYMNDAPFTSPISQESPGRLGTFIGWQIVKSYMEKNDKSGLKDLMDEENSQKILENS
                     GYRP"
     gene            complement(2230..2328)
                     /locus_tag="VI413_11875"
                     /pseudo
     CDS             complement(2230..2328)
                     /locus_tag="VI413_11875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005810660.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
BASE COUNT          780 a          458 c          414 g          707 t
ORIGIN      
        1 ggttatctga aatcttattc tgccaatatg gttgtaggtt ttgatccaac tggaaaacaa
       61 ccgactactt tccaattatt ttttggtcca aatcaataca aaattctgaa ctcgttcgac
      121 aaaggcgttg aatcggacaa agaactacaa ttaaacaaac tgattccact tggctgggga
      181 atatttggct gggttaaccg atttgttatt attccacttt ttaacttctt tagccagttt
      241 atcagcaact ttggacttat catcctatta atgaccatag tcattaaact cgtattgttc
      301 ccattgacat acaaatcgta catgtcaagt gcaaaaatga gggtgttaaa acctgagatt
      361 gacgaaatac acgctaagat tcccgcagaa aaagctgcag aacgccagaa agcaaccatg
      421 gaattataca gcaaggtggg cgtaagtccg ttgagtggtt gtattccatc cttattgcaa
      481 atgccactgc tttttgccat gttcagcttc ttcccggcat ctatcgagtt gcgtcaacaa
      541 agcttccttt gggcacaaga cctttcggca tacgactcaa ttatgcaact gccatttgaa
      601 attccatttg gatttggcag ccatgtaagt ttattctgtt tactgatgac agtcacaaat
      661 attatttaca caaagttgaa catgaccaat acggccactg ccgaccaacc tggtggagca
      721 atgatgaaat ggatgatgta tttgatgccg cttatgttct tgtttatgtt taacagctat
      781 gcatccgggt tgagctatta ctactttatt tcaacgctta tttctatcgc ccagacttat
      841 gctatacgtg gatttgttga tgaaaaaaag attttagccc agttgcacgc taaacgggcc
      901 aataacagta aaaaacccgc caagaaaggt ggatttatgg atcgtttgga aaaaatgcaa
      961 cgtgaacaac aaaaaaccat acaaaaacgt aagtaattaa tttatataac tgacaaagaa
     1021 gcgcaatctg caaatttcat tttgcgtttg cgcttctttt atttactgat tgataaaaaa
     1081 tgaaaaaaac aagttccctt attttcttcc ttggaggagt attgatttta cttggctcct
     1141 gcactaaaag aagccggttt gaaattgaca cgacaaaaaa ccgatatgaa gttaagattc
     1201 ataggtttga caaagacttg ttatcccttg acacaactaa tatcaaatcc ggagttgata
     1261 gtttatatgc acattaccag gagtttttac cagtcttcac atacaacata ctagacacta
     1321 ctgcaaaaga tacaactgct gtttgcaatt tatttcgcaa attcctgagt gacaaaacct
     1381 atgctcctgt caataaaaaa gtacagcaaa tctatggtgg tgatattaca gacatacaag
     1441 ttaaaatatc agaggcatat acatatatcc atcactattt tcctgaagta gaattacccg
     1501 aagtatattt ctttgtttct ggttttaaca gccaggtaat tatgaatgac aaattcatcg
     1561 gattaggaac cgatttctac ctgggaaatg atttcccact atacaaagat ttgacttaca
     1621 aatatatgat ttacaatatg aggcgcgaaa atcttgcgtc tgatttagtt tctgccacac
     1681 tgtttcggat gtttgttatg aattctgatg aaaacaggtt attagacaac atgcttttcc
     1741 gcggtaaaat aatgtatctt ttatctgtat tcatgccgga ggaaaagccg gatatcttaa
     1801 tgggctactc ccccgaccaa tggaactgga gcaaaaaata tgaaaaagaa atatgggcag
     1861 ccattgtaga ccaaaaacat cttttttcaa ctgacattca gctgattcat aaatacatga
     1921 acgacgcacc tttcacctct cctatttcac aggaatcacc cggaaggctg ggaacattta
     1981 ttggctggca aattgtaaaa agttatatgg agaagaatga caaatcagga ttaaaagacc
     2041 tgatggatga agaaaattcc caaaaaatac tggaaaactc gggctaccgt ccataaaagc
     2101 agtctcaaaa tattacatta caattacctg caaacaaaaa agacctgtcc gaaaaaacga
     2161 acaggtcttt attatttgat gcaatatcaa ttataccgga ctaattgctt ctgaaggaca
     2221 aacatcagcg tcgataacat agatatcacc ttccgaaatt gcttccaccg gacattcgct
     2281 gatacatgaa ccgcaagcaa tacaatcttc tgaaattacg taagccattt ttcttatttt
     2341 ttttgttagt actaattag
//
LOCUS       DATDNM010000705         2580 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1580139, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000705 DATDNM010000000
VERSION     DATDNM010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1580139"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1190
                     /gene="yidC"
                     /locus_tag="VI413_11880"
     CDS             <1..1190
                     /gene="yidC"
                     /locus_tag="VI413_11880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEY6915367.1"
                     /translation="YSAIEYKYVADDIEKLSESKDDQKDLDNKVKWVAFKDQFFSSIL
                     ISNDGISSTKLKSTLEKEGSGYLKSYSANMVVGFDPTGKQPTTFQMFFGPNQYKILNS
                     FDKGVESDKELQLNKLIPLGWGIFGWVNRFVIIPLFNFFSQFISNFGLIILLMTIVIK
                     LVLFPLTYKSYMSSAKMRVLKPEIDEIHAKIPAEKAAERQKATMELYSKVGVSPLSGC
                     IPSLLQMPLLFAMFSFFPASIELRQQSFLWATDLSAYDSIMQLPFEIPFGFGSHVSLF
                     CLLMTVTNIVYTKLNMTNTATADQPGGAMMKWMMYLMPVMFLFMFNSYASGLSYYYFI
                     STLISIAQTYAIRASVDEKKILAQLHAKRATNSKKPAKKGGFMERLEKMQREQQKAMQ
                     NRK"
     gene            1270..2286
                     /locus_tag="VI413_11885"
     CDS             1270..2286
                     /locus_tag="VI413_11885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915368.1"
                     /translation="MKKTSSLIFFLGGLLILLGSCTKSSRFEIDTTKDRHEVKIHRFD
                     KDLLSLDTTNIKPGVDSLYARYQEFLPVFTYNILDTTAKDTTAVCNLFRKFLGDKTYA
                     PVNKKVQQIYGGDITDIQIKISDAYTYIHHYFPEVELPEVYFFVSGFNSQIIMNDKFI
                     GVGTDFYLGNDFPLYKDLTYHYMIYNMRRENLASDLVSATLFRMFVINSNENRLIDNM
                     LFRGKIMYLLSVFMPEENPDILMGYSPEQWNWSKKYEKEIWAAIVDQKHLFSTDVQLI
                     HKYMNDAPFTSPISQESPGRLGTFIGWQIVKSYMEKNDKLGLKDLMNEDNSQKILENS
                     GYRP"
     gene            complement(2382..2549)
                     /locus_tag="VI413_11890"
     CDS             complement(2382..2549)
                     /locus_tag="VI413_11890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007658993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY6915369.1"
                     /translation="MAYVISEDCIACGSCISECPVEAISEGDIYVIDADVCTDCGTCA
                     DVCPSEAISPV"
BASE COUNT          856 a          491 c          459 g          774 t
ORIGIN      
        1 gttactcagc cattgaatac aagtatgttg cagatgacat tgaaaaacta agtgagagca
       61 aagatgacca aaaagaccta gacaataaag ttaaatgggt tgcatttaaa gatcagtttt
      121 ttagcagtat tttaatctca aatgacggaa tttcgtcaac taaacttaaa agtacccttg
      181 aaaaagaagg ttctggttat ctgaagtctt attctgccaa tatggttgtt ggctttgatc
      241 ctacaggaaa acaaccaacg acattccaaa tgtttttcgg cccaaatcaa tacaaaattt
      301 tgaattcgtt cgacaaaggt gttgaatcgg acaaagagct gcaattaaac aagttgattc
      361 cacttggctg gggtatattt ggatgggtaa accggtttgt tatcattccg ctattcaact
      421 tctttagtca gtttatcagc aactttggac ttatcattct attaatgacc atcgttatta
      481 aacttgtatt gttcccattg acgtacaaat cgtacatgtc gagcgccaaa atgagggtac
      541 taaaacctga aattgacgaa atacacgcaa agatcccggc tgaaaaagcg gcagaacgcc
      601 agaaagcaac catggaatta tatagcaagg tgggcgtaag tcctttaagt ggctgtattc
      661 catccttatt gcaaatgcca ctgctttttg ccatgttcag tttcttcccg gcatctatcg
      721 agttacgcca acagagtttc ctatgggcaa ctgacctgtc ggcatacgac tcaattatgc
      781 aactaccatt tgaaattcca ttcggatttg gcagtcacgt aagtttattc tgtttattga
      841 tgacagtaac gaatattgtt tatacaaagc taaacatgac caacacggct acagccgatc
      901 aacctggtgg agctatgatg aaatggatga tgtatctgat gcctgtcatg ttcctgttca
      961 tgtttaacag ttatgcatcc ggcttgagct attattattt tatctcaaca cttatttcta
     1021 tcgctcagac ttatgctatc cgtgcatctg ttgacgaaaa gaaaatttta gcccaattgc
     1081 acgccaaacg tgctaccaac agtaaaaagc cagccaagaa aggtggcttc atggagcgtt
     1141 tggaaaaaat gcaacgcgag caacagaaag ctatgcaaaa tcggaagtaa ttaattatat
     1201 aacttacaaa gaagcgcaac ctgcaaattt cactttgcgt ttgcgctttt ttatttactg
     1261 attgacaaaa tgaaaaaaac gagttccctt attttctttc ttggaggatt attgattcta
     1321 ttgggttcct gcactaaaag cagccgcttt gaaattgaca ccacaaaaga tcgacacgaa
     1381 gttaagattc accggttcga caaagactta ttatcactcg acacaacaaa tatcaaaccc
     1441 ggtgttgata gtttatatgc ccgttaccag gagtttttac cagttttcac atacaacata
     1501 ttagatacta cagcaaaaga tacaactgct gtttgtaatt tattccgtaa atttttaggt
     1561 gacaaaacat acgcaccggt aaacaaaaaa gtacagcaaa tttatggtgg cgatattaca
     1621 gacatacaaa ttaaaatatc agatgcatac acatatatcc atcattattt tccggaagta
     1681 gaattgccag aggtttattt ctttgtttct ggatttaata gtcagataat tatgaatgac
     1741 aaattcatcg gagtcggaac cgatttttat ctgggaaatg attttccatt atataaagac
     1801 ctgacttacc attacatgat ctataacatg aggcgtgaaa atctggcatc tgatttagtt
     1861 tctgccacac tgtttcgtat gtttgttatt aattcaaatg aaaacagatt aatagataac
     1921 atgcttttcc gcggcaaaat aatgtatctt ttatctgtat tcatgcctga ggaaaatcca
     1981 gatattttaa tgggctactc tcctgaacaa tggaattgga gcaaaaaata cgaaaaggaa
     2041 atatgggcag ccattgtaga tcagaaacac cttttttcaa ctgacgttca gctaattcac
     2101 aaatacatga acgatgcacc tttcacctct cctatttcgc aggaatcacc cggaagattg
     2161 ggaacattta ttggctggca aattgtgaaa agttatatgg aaaagaatga taaattagga
     2221 ttaaaagacc taatgaatga agataattcc caaaagatac ttgaaaactc gggttatcga
     2281 ccataaatgt agtttttcta acctcacatt tcaattacct acaaaaaaaa gacctgttcg
     2341 agaaaaaacg aacaggtctt tattattcga tgcaatatca attataccgg actaattgct
     2401 tctgaaggac aaacatcagc gcaagttcca caatcggtgc aaacatcagc gtcgataaca
     2461 tagatatcac cttccgaaat tgcttccacc ggacattcgc tgatacatga accgcaagca
     2521 atacaatctt ctgaaattac gtaagccatt tttcttattt tttttgttag tactaattag
//
LOCUS       DATDNM010000706        10113 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_512750, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000706 DATDNM010000000
VERSION     DATDNM010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 10113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10113
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512750"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1169
                     /locus_tag="VI413_11895"
     CDS             <1..1169
                     /locus_tag="VI413_11895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007762338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEY6915370.1"
                     /translation="KGEDIEIAFTHSDQYGEEYYSFVNGQHTTQGGTHQSAFREAVAR
                     TIKEFYAKNMEVTDIRNGIIAAVAISVEEPVFESQTKTKLGSRDMAPSGGVSVSKFIS
                     DFLKKELDNYLHRNSDTSATLLQKIQDSEKERKAIAGVTKLARERAKKVNLHNKKLRD
                     CRVHFNDSLTKDEAKNTAIENSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSY
                     GLTKKIVYENEEFNLLQAALNIEDSIENLRYNKVIVATDADVDGMHIRLLLITFFLQF
                     FPDLIKKGHVHILQTPLFRVRNKKETVYCYSDEERLSAIARLGANPEITRFKGLGEIS
                     PDEFKHFIGKDMRLDQVTLKKEDAVQDLLSFYMGKNTSERQNFIIDNLVVEEDV"
     gene            1321..1797
                     /locus_tag="VI413_11900"
     CDS             1321..1797
                     /locus_tag="VI413_11900"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0052717 - tRNA-specific adenosine-34
                     deaminase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HEY6915371.1"
                     /translation="MPISYYSDDDSKDLNPDVYFMKQALLEARKAGERDEVPIGAVIV
                     CQGRIIARGHNLTETLTDVTAHAEMQAITAAAQFLGGKYLTECTLYVTVEPCVMCAGA
                     LGWSQISRIVYGASDEKRGYMRFAPYSLHPKTEVVYGVLEEECSTLVKDFFKKKRN"
     gene            complement(1966..3081)
                     /locus_tag="VI413_11905"
     CDS             complement(1966..3081)
                     /locus_tag="VI413_11905"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY6915372.1"
                     /translation="MKIGFFILALAILLSMNSYVMVRGWHALPPVSVLRPVYLFSMLV
                     LFVAMFAGMIFGSSMPPAVGKAVTFVGYTYMIIFIYLFLSFLLVDIVRLANYAIHFAP
                     AGMSVFRMWAMYITLGSTAVALVIGNIKFNHPEIVTLNLSTEKPLQHKTLKIVAASDI
                     HLGVSIDKKQLQKYVKMINDQHPDIVLLPGDVSDREMKPVIAQHMDEELRSIKAPMGI
                     FAINGNHEHYAETPKATAEYLKKAGITFLCDEVSMVDSSFYIVGRDDRTNHKRKNLAE
                     IVKGLDTTKPIILMDHQPFHLSEAENNGIDLQISGHTHNGQFFPGNLFVKRMFELGHG
                     YLKKGKTHYYVSSGLGLWGPQYRIGTQSELVVINLKY"
     gene            3459..3800
                     /locus_tag="VI413_11910"
     CDS             3459..3800
                     /locus_tag="VI413_11910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915373.1"
                     /translation="MNKTVKNKIHSAFGWLLLVLFVGILVMKPAHILVSHHNLPGVEL
                     VNTHHNTLSNRTHQECSICDFEFYNFIPQDKIQIPQAKIFLSNGLAALAIACFVSQTS
                     HLFQLRAPPVL"
     gene            3981..6401
                     /locus_tag="VI413_11915"
     CDS             3981..6401
                     /locus_tag="VI413_11915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6915374.1"
                     /translation="MKRIFFILFSFVMILSTHAEFMGVSQTNLHGKITDKTGDPVIGA
                     SIYFPELKAGAITNSDGIYRIENLPKRTILMQVSSVGYKMIVESINLALLSEKDFVLE
                     ESVTEINEVAVTGQAVASQMTKTPTPISVVTVTELQQHASTNIIDALSSQPGVSQITT
                     GSGISKPVIRGLGYNRVVVVNDGVRQEGQQWGDEHGIEIDENEVNKVEILKGPASLLY
                     GSDAMAGVISFFSAPILPQGKMVLNALANYQTNNGLMAYSLNFAGHKKNVVWDMRYSN
                     KQAHAYQNSYDGYVFNSGFSENAVSGLIGISDWWGYSHLTFSTYHLTPGIVEGNRNPV
                     TGQFTKPVVLNDSTEGETVPTQKDFTSYGHSIPFQQVNHYKVVWNNNILIGEGSFKAN
                     IGYQQNRRQEFADILSPNDYGLYFQLHTVNYSFLYQLPEIKGFNLSAGVNGMYQSSLN
                     KGTEFLVPAYRLFDAGAFIVGKKTFGKLDISGGIRVDNRAETADALYLDANEVTTNPT
                     DPTATQRFSAFSGNFGGISGSIGATMALSENWITKLNLSHGFRAPNISELASNGVHEG
                     TIRYETGNPDLRSENSLQLDYELGYNTEHVNAKLNLFANNISNYIYSHKINSEIGGDS
                     IQSGYPCYKFDSGNAQLMGGEVYIDIHPHPWDWLHFENSFSYVHAELRNQPDSTRYLP
                     FTPAPKWISDVRFDFDRAGKWLKNTYFSVGIEHDFRQTNIYSAYNTETVTNAYTLINA
                     GAGTDIVWKKHTLFSVFINCTNLADVAYQSHLNRLKYAPENPVTGRMGIFNMGRNISF
                     KLIIPVSL"
     gene            6526..8823
                     /locus_tag="VI413_11920"
     CDS             6526..8823
                     /locus_tag="VI413_11920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEY6915375.1"
                     /translation="MKKCLVILYLFTSFLVSAPAQKVGLVLSGGGAKGITHIGVIKAL
                     EENNIPIDYVAGTSMGAIVGGMYAMGMSPDEMIAVLKSDDFKHWSTGEAESDYVYYYR
                     NADPKPNFMEMSFRINNLDSLNIKPNILPTNIISPRQMNYAFVPLCAQANAVAGGNFD
                     KLFVPFRCVASDIYNKRAVVFRRGVLGDAIRASMTYPLLFKPIIIDDLLLFDGGIFNN
                     FPVDVMRSDFNPGFMIGSAVSANPRKPDEGDIVMQVENMVMNHTDYSISNEEGLLLKF
                     KISNSRTFDFSRVDEFVKLGYDSAMKHIDELKTRINRTVSVEELAARRHNFVKEFPEL
                     KFQRVEVVGVDSLQKRYVEQVFHYKNEVFSQNEFKEAYFKLNSDDKILEVLPHVDYDS
                     VTGNFKLRLNVKTQDHLKVLLGGNVSSSTSNQGYFGLTYQNLTEYAQSAYIDAQFGKL
                     YNGLGLGTRIEIPTQKSWYMKLALVFHKFDYFEGDELFYADNRTANFTQFETYGKLRV
                     GFPVTMKGRLEFGVGYGLLTDYYVQDRSLVTVTTKEDKSIFSLGSVFGRIESYTLNNL
                     MYPTAGYSKSSSIQLLGGEEFFRSVDRPNTNVSDRLDLWLQYRGKFEQYYPINSHITL
                     GGYGELALSSRKLLQNYTVSLIQAPVFQPTPHSKTVFNGAFSANQFAAIGVKPIYNFN
                     KQLHVRGEAYWFLPYRSINRAADNSAYYSEPFSSSHFMAETSLVFNFKIASAGMFVNY
                     YSSAVSKWNFGLNIGFLLFNSKFIE"
     gene            complement(8831..9739)
                     /locus_tag="VI413_11925"
     CDS             complement(8831..9739)
                     /locus_tag="VI413_11925"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6915376.1"
                     /translation="MKKLIYLIIALNVCSTSVGQSSSTLFDRAVKKYYNQDFKGAIED
                     YTKFIERNGNNAKAYVSRGLAKYYLQDYEGAIADQDKAIQLDPGYADAYFNKGDCKYN
                     MQDYEGAIAEYTKTLEIKPKDAMALTSRGLTKQYIKDYKGAVEDFSLAIKYQPNVADG
                     YIYRGIAKYYIGDYEGAIADYSKSIRVQPLSDAYFNRGNAKDALKDFAAALKDYNKAI
                     DMNPKHFKALHNRGLTKISMNDNKGATEDFSKAIELNPRYGDAYYNRGVARLNLGMKE
                     AACQDLRSAEQLGQSKAKAILKNNCE"
BASE COUNT         2943 a         1948 c         2191 g         3031 t
ORIGIN      
        1 tgaaaggcga agacattgaa attgctttta cccacagcga ccaatatggg gaagaatact
       61 actcgtttgt aaacggacaa cataccacac agggaggaac acaccaaagt gcttttcgcg
      121 aagcagtggc ccgtaccatc aaggagtttt atgccaaaaa catggaagtc accgatatcc
      181 gtaatgggat tattgctgcg gtagctatca gcgtggaaga gccggttttc gaatcgcaaa
      241 ccaaaaccaa gctcggctcg cgcgatatgg ctccttcggg aggcgtttcg gtcagtaagt
      301 ttatttccga ctttttaaag aaagaactgg acaactacct gcaccgtaac agtgatacat
      361 cggccacgct gcttcagaaa atccaggatt cggaaaaaga gcgtaaagcc attgccggag
      421 taaccaaact ggctcgtgaa cgtgccaaaa aggttaacct gcacaataaa aagcttcgtg
      481 attgccgtgt gcatttcaat gattcgctta cgaaagacga agctaagaat acggctatcg
      541 aaaactcctg catctttatt accgagggtg attcggcgag tggatccatt actaaaagtc
      601 gtgatgtaaa cacgcaggct gtgttcagtt tacggggtaa acctctgaat agctatgggt
      661 tgacaaaaaa aatcgtgtac gaaaacgaag aatttaacct gttgcaggcg gctctgaata
      721 ttgaagacag cattgaaaat ttgcgctaca acaaagtgat tgttgctacc gatgccgacg
      781 tggacggtat gcacatccgg ttgttgctca ttactttctt tctccagttt ttcccggatt
      841 taatcaagaa aggacacgtg catattttgc aaacgccgct cttccgtgta cgaaataaaa
      901 aagaaacggt atattgttat tctgatgagg aacgcctgtc ggcaattgcg cgcctgggtg
      961 caaatcctga aattacccga tttaaaggac ttggtgaaat ctcgcccgac gagttcaagc
     1021 actttattgg caaagatatg cgtctggatc aggttacgtt gaaaaaggag gatgctgttc
     1081 aggatttgtt gtcgttctac atgggtaaaa atacttccga acgccagaac tttattatcg
     1141 ataacctggt ggtggaagaa gacgtttagg tcagttgaca attaattgat ttcattatag
     1201 caaaataatc aaaaaggaca tcaattatgg tgtctctttt tttatacaat cattttttaa
     1261 ttgcttttct aataagaata gattacgcac agattaagtc caaattttaa aaaagtatat
     1321 atgcccatat cttattactc agacgacgac tcgaaggatc taaatccgga tgtttacttc
     1381 atgaaacaag ctttgctcga ggcccggaaa gccggtgagc gtgacgaagt tcctataggg
     1441 gctgttattg tgtgccaggg acggattatt gcccgtgggc ataacctgac cgaaacgctg
     1501 acagatgtta ccgctcatgc cgaaatgcag gcaataactg ctgctgcaca gtttttaggt
     1561 ggaaaatacc tgaccgagtg tacactgtat gtaaccgtgg agccttgcgt gatgtgtgcc
     1621 ggagcgttgg ggtggtcgca gataagccgg attgtgtatg gggcttctga cgaaaagcgg
     1681 ggttatatgc gctttgcacc ctattccctg caccccaaaa cggaagtcgt ttacggagtg
     1741 ttggaagaag aatgcagcac attggtgaaa gattttttta aaaagaagag gaattaatgt
     1801 gatgattagt tgatgtgata atgtgatgat taggtgctgt gatgatatga tgattgaagg
     1861 ttttccggaa ttgatattat catttttcct ttccggagaa agtgcattga ataaatccga
     1921 atgaattacc acatcaacta atcatcacat caacacatca tcacatcagt atttcaaatt
     1981 tattaccacc agctccgact gcgtgccaat gcggtattgc ggtccccaaa gcccaaggcc
     2041 agacgaaaca taatagtgtg ttttgccttt ctttaaatag ccatggccaa gctcaaacat
     2101 ccgttttaca aataaattgc cggggaaaaa ttggccgttg tgcgtatgtc cggaaatctg
     2161 aaggtctatg ccgttatttt cggcttcact taaatgaaat ggttggtggt ccattaaaat
     2221 aatgggtttg gttgtatcca gtccctttac tatttcggcc agattttttc gtttgtgatt
     2281 agtccggtca tcgcgtccaa caatataaaa gctgctgtcg accatgctca cttcatcgca
     2341 aagaaaggtt atgcctgctt ttttcaggta ttcagctgta gctttgggag tttcagcata
     2401 gtgttcatga tttccgttaa tggcaaaaat gcccatagga gctttaatac tacggagttc
     2461 ttcgtccata tgttgggcaa ttacaggctt catttccctg tcagaaacat cgcccggcag
     2521 caacacgatg tccggatgct ggtcgtttat catcttcaca tatttctgaa gttgtttttt
     2581 atcaatgctc acgcccaaat gaatgtcact ggcagccact attttcagtg ttttgtgttg
     2641 cagcggtttt tcggtgctca aattcagggt gacaatttcg ggatgattga atttgatatt
     2701 tccaatgacc aaagcaacag ccgttgagcc taaagtgata tacatagccc acattcggaa
     2761 tacggacata cctgccggcg caaaatgaat ggcataattg gccaggcgca caatgtccac
     2821 caacagaaaa ctaagaaaca ggtaaataaa aatgatcatg taggtataac ccacaaaagt
     2881 taccgctttt ccaacggcag gtggcattga gcttccaaaa atcattccgg cgaacatggc
     2941 tacaaacaga accaacatgc tgaaaaggta gacaggacgt aaaacagaaa cgggtggcag
     3001 tgcatgccat ccgcgtacca ttacgtaact attcattgag aggagaattg ccagggcaag
     3061 aataaagaaa cctattttca tacgataata attgattttt aaaggtctta tggaactcgc
     3121 atgtcagatt ttcataccat ttggtgaata cctgcattag ctaacgctga ccgttggttt
     3181 atgctcgttt catacgatag taagtgtttt tagttataat tatgaaactt gctccaccgg
     3241 aactggagtc gcctcatatt ttttgtaatt gtgaaattaa acgtttaaaa gaccatattg
     3301 ttttacagaa tgtgtttata aaacttataa ttaatgaaca ataataattt ggaaaacaaa
     3361 tgtaatctaa tttccgttaa ataagacatg attattttta ataggtttaa agcctgcctc
     3421 agaataattc tatatacttt tgtgacctga ttaatgaaat gaataaaaca gtcaaaaata
     3481 agattcactc agcatttggt tggcttttac ttgtactctt tgtaggaata ttagtaatga
     3541 agcctgctca tatactggtg tctcatcata atttgcctgg tgttgaattg gttaatactc
     3601 atcacaatac tctttccaat cgtactcatc aggaatgctc tatctgtgat tttgagtttt
     3661 ataattttat tcctcaggac aaaatacaaa ttcctcaggc aaagatattt ctttccaacg
     3721 gacttgcagc actggcaatc gcctgctttg taagtcaaac ttcgcatctc ttccagttaa
     3781 gggcaccacc tgtattataa agactttcga tgcttttcac ctgcaataat tctaaaaaat
     3841 tattacaggt tgttgcatct tatccacact tattgcttag ctgaacagaa tgattatccg
     3901 tggttgtttt cttgataatt caattagtgt ttggctgtga ggcaagtatt cagttattta
     3961 cacttaaata aaatttaaag atgaaaagga tattttttat tctcttttcg tttgtcatga
     4021 tattaagcac ccatgctgag tttatgggag tttcacaaac gaacttacat ggcaaaatta
     4081 cggataaaac aggagaccct gttattggag ccagtattta tttcccggaa ttgaaagccg
     4141 gtgcaattac caattctgat ggaatttaca ggattgaaaa cctgccaaaa cgaacaatcc
     4201 ttatgcaggt tagttcggta ggatataaaa tgattgttga aagtatcaac ctggccctgt
     4261 taagcgaaaa agactttgta ctcgaagaat cagttactga aattaatgaa gtggcggtta
     4321 cgggacaggc tgttgcttcc caaatgacta aaacgcccac tccaatcagc gtggtaaccg
     4381 tgacagaatt gcaacagcac gcttctacca acattattga tgcgttgagt tcacaacccg
     4441 gagtatcgca aattaccacc ggcagtggca tctccaagcc tgttatcaga gggttgggat
     4501 acaacagggt tgtagtcgtt aacgatggag tgcgccagga aggccagcaa tggggcgatg
     4561 aacatggtat tgagattgac gaaaacgagg taaacaaagt ggaaatactc aaaggccctg
     4621 ccagcttgtt gtatggctcg gatgccatgg ccggagtaat cagtttcttc tcggctccca
     4681 ttcttccaca agggaaaatg gtacttaatg ctttggcaaa ttatcagact aataatggat
     4741 tgatggccta ttccctgaat tttgcaggtc ataaaaagaa cgtcgtgtgg gatatgcggt
     4801 atagcaataa gcaggcacat gcttatcaaa acagctatga tggttacgtt ttcaattccg
     4861 ggttcagcga gaatgccgtt tcgggattga taggcatcag cgattggtgg ggatattccc
     4921 atctgacttt tagcacatat catcttactc cgggcatcgt ggaaggaaac agaaaccctg
     4981 ttaccggaca attcactaaa cctgttgttt tgaatgacag caccgaaggc gaaactgttc
     5041 caacacagaa agattttaca agctacggac attcaatccc ttttcagcag gttaaccatt
     5101 acaaagtggt atggaacaat aacatcctga taggcgaagg aagtttcaaa gcgaacatcg
     5161 gctatcaaca aaaccgcagg caggaatttg ccgatatcct gagccccaac gattatggct
     5221 tgtatttcca gcttcatacc gttaattaca gttttcttta ccaacttccc gaaataaaag
     5281 gcttcaatct ctcggccggg gtaaatggca tgtatcaaag ctcgttgaac aaaggaacgg
     5341 agtttctggt cccagcatac cggttgtttg atgcaggtgc atttattgtg ggaaaaaaaa
     5401 cgtttggaaa actggacatt agcggtggca tacgcgttga taaccgggcc gaaactgctg
     5461 atgcccttta cctggatgca aatgaagtta caacaaaccc gactgaccca accgccaccc
     5521 agcgcttttc ggctttctcc ggcaactttg gtggaataag cgggagcata ggcgccacaa
     5581 tggctctaag cgaaaactgg atcacaaaat taaatctttc gcatggattc agggctccga
     5641 atatcagtga acttgcttca aacggggttc atgaagggac tatccgatac gaaaccggga
     5701 atccggattt gagatcagaa aacagcctgc aattagatta tgaactgggt tataataccg
     5761 aacatgtgaa tgcaaagttg aatttgtttg ccaataatat ctcaaactat atttattccc
     5821 ataaaataaa cagtgaaatt ggaggcgatt ccatccaaag cggttatccg tgttacaaat
     5881 ttgattcggg gaatgcgcag ctcatgggtg gagaagttta tattgacatt catccgcatc
     5941 cgtgggactg gttacatttc gaaaacagtt tttcgtatgt gcatgctgaa cttaggaatc
     6001 agccagattc tacccggtat ctgcctttta ctccggctcc aaagtggatt tcggatgtca
     6061 gatttgattt tgatcgtgcc ggtaaatggt tgaaaaacac ttatttttca gttgggattg
     6121 aacatgattt tagacaaacc aatatctatt cggcttataa tacagaaaca gttaccaatg
     6181 cctatacgct aattaatgct ggtgcgggaa ctgatattgt atggaaaaaa cataccctgt
     6241 tttcagtttt tataaattgc accaatctgg ctgatgttgc gtaccaaagt catttgaaca
     6301 ggttgaaata cgcccctgaa aatccggtta cgggacgaat ggggatattt aatatgggcc
     6361 ggaacattag ttttaaactt attattcccg tgagtttatg aaaattgctg ttgccggtat
     6421 gtttctttat agcagacgtt tttttattaa aagaatttgt caggtattta agtgtgagtg
     6481 ttcttttttt gtatttttac agcataaaac caacactcct ttccaatgaa aaagtgcctt
     6541 gtgattttat atctgtttac atcgttttta gtatcagcac ctgcccaaaa agtagggttg
     6601 gtattgagtg gcggaggtgc caagggaata acccatattg gtgttatcaa agcgctggaa
     6661 gaaaataata tccctattga ttatgtggca ggaacttcga tgggagctat tgtgggagga
     6721 atgtatgcca tggggatgtc gcccgatgaa atgattgctg ttttaaaatc ggatgatttc
     6781 aagcattggt caaccggtga ggctgaatcg gactatgtgt attattaccg caatgcagat
     6841 cccaagccga atttcatgga aatgagtttc aggataaata acctggactc gttgaatatc
     6901 aagccgaata tccttcctac caatattatt tctccacgcc agatgaatta cgcgtttgtg
     6961 cctttgtgtg cacaagccaa tgcggtagct ggtggcaatt tcgacaaact tttcgttcca
     7021 ttccgctgtg ttgcttccga tatttataat aaacgagccg tggttttccg tcgtggcgta
     7081 ctgggcgatg ccattcgggc ctccatgact tacccgttgt tgttcaaacc aataattatt
     7141 gatgacctgt tgctttttga tggcggaatt ttcaacaatt ttcccgtgga tgttatgcgc
     7201 agtgatttta atccaggatt tatgattggc agtgcggtat ctgctaatcc ccggaagccg
     7261 gatgaaggtg atatagtgat gcaggttgaa aatatggtta tgaaccatac cgattattct
     7321 atttccaatg aagaaggatt gttgctgaaa ttcaagataa gcaattcgag aacatttgat
     7381 ttttccaggg tggatgaatt cgtgaaactg ggttatgatt ctgccatgaa acacattgac
     7441 gagttaaaga ctcgtattaa tcgaacggtg tctgtcgaag aactggcagc gagaaggcat
     7501 aattttgtaa aagaatttcc ggaacttaaa tttcagcggg tagaagtagt gggggttgat
     7561 agtcttcaga aaagatatgt ggagcaggtt ttccattata aaaacgaagt gtttagccaa
     7621 aatgaattta aagaagccta ttttaaactt aattctgatg ataaaattct ggaagtgttg
     7681 ccgcatgtgg attatgattc agttacagga aatttcaaat tgcggttaaa tgtaaaaaca
     7741 caagatcatt taaaagtgtt gctcggtggc aatgtgtctt catcaacatc caatcagggg
     7801 tattttgggc taacgtatca aaatctgacc gaatatgctc agtcagccta tattgacgct
     7861 cagtttggaa aattgtataa tggattgggg cttggaaccc gaattgagat tccgactcag
     7921 aaaagctggt atatgaagtt ggcactggta tttcataaat tcgattattt tgaaggcgat
     7981 gaattgtttt atgccgataa cagaacggcc aatttcaccc aatttgaaac gtatggcaaa
     8041 ttgcgtgttg gttttccggt gaccatgaaa ggacggctgg agtttggtgt tggctatggt
     8101 ttattgacag attactatgt tcaggacagg tcgttggtca cagtaaccac aaaagaagat
     8161 aaaagcattt tctcgcttgg gagtgtattt gggcgcattg aaagttacac gctgaataac
     8221 ctgatgtatc cgactgccgg ttacagtaaa tcatcatcaa ttcagttgct gggtggagaa
     8281 gagtttttca gatcggttga ccggccgaat accaatgtgt cggacagatt ggatttatgg
     8341 cttcagtaca gggggaagtt cgagcagtat tatcccatta attcgcatat tactctcggt
     8401 gggtatggtg aattggccct gtcgtcgcgt aaattgcttc aaaactatac tgtaagtctt
     8461 attcaggctc cggtttttca acccactccg catagtaaaa ctgttttcaa cggagctttc
     8521 agcgccaatc agtttgctgc gattggtgtg aagccgatat ataatttcaa taaacaactt
     8581 catgtccggg gggaagcgta ttggttttta ccctacagaa gtattaacag ggcagccgac
     8641 aacagcgctt attattcaga accgttttct tcgtctcact ttatggctga aacctcgttg
     8701 gtatttaatt tcaagatagc ctcggcgggt atgtttgtaa attattacag ttcagctgtc
     8761 agcaaatgga attttgggtt aaatatcgga tttttgttgt tcaacagcaa atttattgaa
     8821 tgataccggt ttattcacaa ttattcttca gaattgcttt agctttactc tgacccaatt
     8881 gctcagcact tctcaaatcc tgacaagcag cttctttcat tcccagattt aatctcgcaa
     8941 ctccacggtt ataataagca tctccatagc gtggatttag ttcaatcgct ttcgaaaaat
     9001 cctctgttgc acccttatta tcattcatgg atattttggt taatcctctg ttgtgcaaag
     9061 ctttaaaatg ttttggattc atatctattg ccttgttgta atcttttagc gcagcagcaa
     9121 aatcttttag tgcatccttc gcatttccgc ggttaaaata ggcatcagac aggggctgaa
     9181 ctcttatgga ttttgaataa tctgcaattg caccttcata atctccaatg taatatttag
     9241 caatgcccct gtaaatatac ccatcggcaa cattaggctg atacttaatt gccagtgaaa
     9301 aatcttctac agcacctttg taatctttaa tatattgttt tgttagtccc ctgcttgtca
     9361 gcgccatggc atctttaggc ttgatttcca gtgtttttgt gtattcggca attgcaccct
     9421 cgtagtcctg catgttatat ttgcaatctc ccttgttgaa atatgcatcg gcatatccgg
     9481 gatctaattg aatggctttg tcctggtcgg caatagctcc ctcgtaatcc tgcaaataat
     9541 actttgcaag tccccggctt acatatgctt ttgcattatt tccgttacgt tcaataaatt
     9601 ttgtgtagtc ttctatagca cctttaaaat cctggttata atactttttg acagccctgt
     9661 cgaagagggt tgatgaagac tggcccacgc ttgtggaaca aacattcaga gcaattatca
     9721 aataaattag cttcttcata ctttcaagaa ttggtttata tttcaaaagt aatcatttgt
     9781 tttaaatgaa aaccaggatg tatgaaaaaa gaggaataag tcttgagtgg agtaggtccg
     9841 atctgcgcgg gaacgtccgt tagctaacgg atatgagccc agcgaattac caaggtattt
     9901 tttaaagaaa tggtctaaat aaaaaagaga aaccgtattt aaacaatttc tcttttcctt
     9961 agttgcggag gcccgactcg aacgaacgtc cgttagctaa cggatatgag cccagcgagc
    10021 taccaggttt tttttaaaga aatggtctaa ataaaaaaga gaaaccgtat ttaaacaatt
    10081 tctcttttcc ttagttgcgg aggcccgact cga
//
LOCUS       DATDNM010000707         3326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_512847, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000707 DATDNM010000000
VERSION     DATDNM010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3326
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512847"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1282)
                     /locus_tag="VI413_11930"
     CDS             complement(<1..1282)
                     /locus_tag="VI413_11930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF349 domain-containing protein"
                     /protein_id="HEY6915377.1"
                     /translation="MSPLELNKDPEIALSETIEIKDVIEVAEKTEVQAEIIEAVTEVV
                     PENSLEAVVEKQPEEVKPITPDYAAYTKPELVETLKVLINKEVDAVKDEVEVIKQLFY
                     KKAKAEVEELKKAFIENGGEEIEFFAPKDELEETFKSLLNEFRAKKASLTAQLEKEKE
                     NNLLQKQHLLGQMKVLVDSNDDVSTHINEFRSLQQKWKSIGQVPASASTELWKQYNLY
                     QESFWDLIKINNELREYDFKKNLESKTLLCEAAEKLAGETDVVSAFQQLQKLHEEWHE
                     LGPVAREIREQIWTRFKDASTAINKKHQSYFDSIRKLEDENYEAKNALCEKIEAFDFS
                     NLNNYKAWDEATKTILAWQEEWRTIGFAPRKVNQKIFDRYRKACDAFFAAKGEFYKET
                     KNVLTQNADKKKALCEKAEALKDSVEWKETADKLI"
     gene            complement(1464..2216)
                     /locus_tag="VI413_11935"
     CDS             complement(1464..2216)
                     /locus_tag="VI413_11935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6915378.1"
                     /translation="MNALITGVTSGFGRAIAFRLARLNYNLIITGRRVERLEELTKQL
                     RSEFPIEVMPLCFDVRDNAACTKAIESIPENLKNIDLLINNAGLAAGAAPFDESDLAD
                     FDQMIDTNVKGLLYVTKLIVPEMIARQSGHIINISSIAGIEVYPNGSVYCASKHAVNA
                     ITKGLRIDLVKYGIKVSSISPGMAETEFSVVRYHGDEEKAKAVYAGLTPLNAEDIADT
                     VEFIVTRPAHVSINDIQINPSQQANTYIAHRK"
     gene            complement(2246..>3326)
                     /gene="ribA"
                     /locus_tag="VI413_11940"
     CDS             complement(2246..>3326)
                     /gene="ribA"
                     /locus_tag="VI413_11940"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEY6915379.1"
                     /translation="FMITHGRGLVCAPITEERCEELDLEMQVEKNTAIHSTPFTVSID
                     KLEGCTTGVSAADRAATFQALADPASKPETFGRPGHIFPLRARTKGVLRRAGHTEAAV
                     DLARLAGLQPAGALIEIMNEDGTMARLPELFEIAEKFKLKLITIKDLIAYRLKTESLV
                     EKGVKVNMPTKYGDFKLIPFRQISNGMEHVALIKGEWENDEPVLVRVHSSCITGDIFG
                     SMRCECGEQLHKAMQLIEKEGKGVVVYMNQEGRGIGLMNKIKAYKLQEQGMDTVDANI
                     HLGFNADERDYGVGAQILREIGVTKIRLMSNNPVKRIGLEAYGLSIIENVPLEVAPNQ
                     HNEFYMTTKKTRMGHDLKHVKGKNE"
BASE COUNT          843 a          691 c          625 g         1167 t
ORIGIN      
        1 gaatgagttt gtcggcggtt tctttccatt caacgctgtc tttcaatgct tcggcttttt
       61 cgcacaatgc ttttttcttg tcagcatttt gagtcagaac gtttttggtt tctttataga
      121 attcaccttt agctgcaaaa aatgcatcgc aggctttgcg gtaacggtca aagatttttt
      181 gattcacctt gcgtggtgcg aaaccaatgg ttctccattc ttcctgccat gccaatatag
      241 tttttgtggc ttcgtcccag gctttgtaat tgttcaggtt gctgaaatca aatgcttcaa
      301 tcttttcaca caaggcattt ttagcttcgt aattttcgtc ttccagttta cggatagaat
      361 caaagtacga ttggtgcttt ttgttgatag cggtagaagc atctttaaaa cgtgtccaga
      421 tttgttcacg tatttcacga gccacagggc ctaactcgtg ccattcttca tggagttttt
      481 gcagttgctg gaaagctgaa acaacatctg tttcgccggc tagtttttct gcagcctcgc
      541 acagtaacgt tttcgattcc aggttctttt taaaatcata ttcacgaagt tcgttgttga
      601 ttttaatcaa gtcccaaaac gactcctgat aaaggttata ctgtttccac aattcggtgg
      661 aagcacttgc aggaacctgt ccaatgcttt tccatttttg ttgcagagag cgaaactcat
      721 tgatatgtgt tgaaacatcg tcattgctgt caacaagcac tttcatttgt cccaataaat
      781 gttgtttttg caataagttg ttttcttttt ctttttcaag ttgggctgtc aaagaggctt
      841 tcttggcgcg gaactcattt aaaagcgatt tgaaagtttc ttccagttca tctttagggg
      901 caaagaattc aatttcttcg ccgccatttt caataaatgc tttctttagt tcttcaactt
      961 ccgctttggc ttttttgtag aacaattgct tgatgacttc cacttcatct tttacggcat
     1021 ccacttcttt gttgataagt acctttaatg tttcaaccaa ctccggttta gtatatgctg
     1081 cataatcggg agtaatcggt tttacttctt caggttgttt ttcaacgact gcttccaagc
     1141 tattttccgg tacaacttct gtaacagctt ctataatttc tgcttgtact tccgtttttt
     1201 cggctacttc aataacgtct ttaatttcaa ttgtttcgct tagtgcaatt tcaggatcct
     1261 tgtttaattc aagtgggctc attttcagta tgtttttagt aaattctgtt ttgtatttct
     1321 acaaaaaaat cattctttga aaattcaaat aaattctttc agacaaaaat agggtatttt
     1381 ttttaaataa tgttatttgt cgtcaaaaat tctttctttt ttctatgtgt aattaaggtt
     1441 ataactaatc caaaaacaga ttattacttc ctgtgtgcaa tatatgtatt agcttgttgc
     1501 gatggattaa tttgaatgtc attgatgctt acatgtgccg gacgggttac aataaattcg
     1561 actgtatcgg caatatcttc agcattcaaa ggcgttaacc ccgcgtaaac tgcttttgct
     1621 ttttcttcgt cgccatgata gcgtacaacg gaaaattcag tttcggccat tcccggagaa
     1681 atggagctga ctttgattcc atatttaacc aggtcaatac gtaaaccttt tgtaatggca
     1741 tttactgcat gttttgatgc acaataaaca cttccattgg ggtaaacttc tattccggca
     1801 atggaagaga tattgataat atgtccggat tgtcgggcaa tcatctcggg aacaattagt
     1861 tttgtcacat acaacagccc ttttacgttg gtgtcaatca tttggtcaaa atctgccaaa
     1921 tcactttcgt cgaaaggtgc tgcaccagcc gccaggccgg cattatttat caacaaatct
     1981 atatttttca aattttccgg aatagattcg atagcttttg tgcaagctgc attatcccgc
     2041 acatcaaagc ataaaggcat tacttcaatg ggaaattccg aacgtaattg ttttgtcaat
     2101 tcttcaagac gttcaacacg tcggccagta atgataagat tgtagtttag tcgggctaag
     2161 cgaaaggcaa tggcccgccc aaatcccgaa gtaactcctg ttattaatgc attcattgtt
     2221 gttgaaaatt gtcgggttgc tgaatctatt cgtttttgcc ttttacatgt ttcaggtcgt
     2281 gtcccatacg agtttttttc gttgtcatat aaaactcgtt atgttgattt ggggcaactt
     2341 caagaggcac attttcaata atggataaac cgtaagcttc caggccaata cgtttaaccg
     2401 gattgttgct cattaaccgg attttagtaa caccaatttc gcgtaaaatc tgggcaccta
     2461 caccgtagtc acgttcgtcg gcattgaatc ccagatgtat atttgcatca acggtatcca
     2521 ttccctgttc ctgtagtttg tatgctttaa ttttattcat caaaccgata ccacggcctt
     2581 cctgattcat ataaaccact acaccttttc cttctttttc aattaattgc attgctttat
     2641 gaagctgttc tccacattcg caacgcattg aaccaaaaat atcgccggta atacatgaag
     2701 agtgaacgcg tactaataca ggttcatcat tttcccattc gcctttgatg agtgccacat
     2761 gttccattcc gtttgaaatt tggcggaaag gaataagttt aaaatcgccg tatttagttg
     2821 gcatatttac ttttactcct ttttcaacca gtgattctgt tttcaaccgg taagcaatca
     2881 ggtctttgat tgtgattaat tttaatttga atttctctgc aatttcgaat aattcaggca
     2941 gtcgggccat tgttccgtct tcattcataa tctcaattaa ggcacctgcg ggttgaagtc
     3001 ctgctaaacg agctaaatct actgcagctt ctgtatggcc tgcacgacgc aaaactccct
     3061 ttgtgcgggc acgtagaggg aaaatatgtc cgggccggcc aaatgtttca ggttttgaag
     3121 ccgggtcggc aagcgcctga aaagtggcgg cgcggtcggc agccgaaact ccggttgtgc
     3181 aaccttccag tttgtctata cttacagtaa aaggtgtgga atgaatggca gtatttttct
     3241 caacctgcat ttccaggtcc agttcttcgc agcgttcctc cgtaattggc gcacacacta
     3301 agcctctacc atgtgttatc ataaaa
//
LOCUS       DATDNM010000708         5036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_192931, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000708 DATDNM010000000
VERSION     DATDNM010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5036
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192931"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..543
                     /locus_tag="VI413_11945"
     CDS             <1..543
                     /locus_tag="VI413_11945"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEY6915380.1"
                     /translation="DPLDGTTNFIHGSTPYAISMALTYKDEPVVGVIHEITRGETFYA
                     WQGSKSYLDGIEIKVSKVDKLSDALIVFGRPHHYMQRYPELLASVDYFMKNTHGLRLS
                     GSAAVDLAYVACGRYDGRYEFNLKPWDIAAGVLIIQQAGGFVSDFQGGNNYFNNGSVL
                     AANACIFEEMKVKIGEIFSM"
     gene            677..3526
                     /locus_tag="VI413_11950"
     CDS             677..3526
                     /locus_tag="VI413_11950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005925615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6915381.1"
                     /translation="MNRIKTFTLAAFIAFSLTSVFAQKITPTTQRVYLSGHGCDDMVQ
                     WDFFCTEGMNSGKWTKIGVPSCWELQGFGQYQYGMKFYGKAFPDGVAKEKGMYKYEFD
                     VPEAWRSKQIFIVFEASMTDTEVKINGQKAGEVHQGAFYRFSYNISGRVKFGQKNLLE
                     VTVSKESENAGVNLAERRADYWNFGGIFRPVFLDVKPANHISQLTIDAKADGTFNANC
                     YLNRTLDGASIKTILLDAKGNKVAENSSPVKAAADWADVQFNVKNPGLWTAETPNRYT
                     AQVSLLANDGSVLHQISEKFGFRTIEIRLSDGLYINGTKVLIKGVNRHSFRPETGRTL
                     SKAKNIEDVLLIKSMNMNAVRLSHYPADPEFLDACDSLGLYVENELGGWHGHYDTTVG
                     TKLAKEMVERDVNHPSVIWWSNGNEGGWNDELNGEFHKYDLQKRPVIHPQGNFGGFET
                     MHYRSYGESQEYMRKPEIFMPTEFLHGLYDGGHGAGLYDYWEMMRKHPRCAGGFLWDL
                     ADEGLKRLDLNGIIDNQGNWGADGVVGPHFEKEGSYYTVKQIWSPVQVMDKSIGKNFD
                     GTFTIENRYDFLNTNTCRFEWKQVKFTASADEKGVVKVLKQGEIKGPDIDAHASGKLS
                     INTTIDPQTEVLYLTAIDYRGEELWRWWFQLPVVKKEIVSSGAAPSTEKTDDKLIVTA
                     GKNKYAFSNKNGELKEVSVDGKKISFANGPRFIAARRADRSLDQFYNHDDEQAKAKDR
                     TYTEFTDAAVFAGFDVKTLGNNLIVMANYKLGNLDNAQWTISPDGTLTLDYSYNFSAV
                     VDLMGVKFDYPEEKMQHKRWLGAGPYRVWQNRIHGTVYDVWENDYNDPVPGESFTYPE
                     FKGYFANVNWINLKTSEGEISITNETPNSYVGVYEPRDGRDKLLYTLPKSGISILNVI
                     PAVRNKVNSTDLNGPSAQPKWVDGVYSGRIILKFK"
     gene            3627..>5036
                     /locus_tag="VI413_11955"
     CDS             3627..>5036
                     /locus_tag="VI413_11955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007760272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY6915382.1"
                     /translation="MKKFKLILLLVSVVGLVEAQSSLFENFKNPSAEAKPWTFWYWMH
                     GAVSKEGIRADLKAMQEIGLGGAYLMPIKGVEGSTYPRPVNQLSPEWWEMVRYSFQMA
                     DSLGLKMGMHISDGFALAGGPWIKPSESMQKVVFTDTIIKGGKIIGLQLRQPEAVQNY
                     YEDIAVYALPVKELPLRGSFSIKSNNPDDTIPFSMQGKDFRSEKPCYIQYTYEKPFTL
                     RSIEIIHAGNNIQSQRLAVLASDDGVNYCLIKQLVPPRQGWQNTGFNTTFSIRATKAK
                     YFRFSWTPEGSEPGSEELDAAKWKPTLKIKYIHLSSEPRINSWEGKAGLVWRIADETS
                     AQEITNKECAPTKKVINLTSYFKDGDLTCKLPKGNWRILRMGHTSTGLTNATAGGGKG
                     LECDKFSEKAVQKQFDNWFGATFAKTDKELAQRVLKFMHIDSWECGSQNWSRNFVTEF
                     QARRGYNLMPYLPLLAGYPI"
BASE COUNT         1503 a         1002 c         1186 g         1345 t
ORIGIN      
        1 gatcctctcg acggaaccac taacttcata catggctcta caccttatgc cattagtatg
       61 gcacttacgt acaaagacga gcctgtggtt ggcgtgatcc acgaaattac ccgtggcgaa
      121 accttttatg catggcaagg aagcaaatct tacctcgatg gaattgaaat taaggtatca
      181 aaagttgaca aactttccga tgcacttatt gttttcggtc ggcctcatca ctacatgcaa
      241 cgctatccgg agttgcttgc ttcggttgat tattttatga aaaacaccca tgggttacga
      301 ctaagcggtt cagctgcagt agatctggct tatgtggctt gcggacgtta tgatggtcgt
      361 tatgaattca acctcaaacc ctgggatatt gctgcgggcg tacttattat ccagcaagcc
      421 ggcggttttg ttagcgattt ccagggcgga aacaattatt tcaataatgg ttctgtattg
      481 gctgccaatg cgtgtatttt tgaagaaatg aaagtgaaaa ttggcgagat attttcaatg
      541 taagttttat cccgaaaata cccatttata aataagcagt ggtttgtttt caatgccaaa
      601 tcttattttc gttgggtaca aataccaact ttcttcgtct tgaaattaag ttatcacgcc
      661 taattttaaa aatcggatga atcgtataaa aacctttact ttggctgcgt ttatcgcatt
      721 ttctctaacc tctgtttttg ctcaaaaaat aactcccact acgcaacgcg tttatctttc
      781 aggtcatggt tgtgatgata tggtgcagtg ggatttcttt tgcaccgaag gaatgaattc
      841 gggtaaatgg accaaaatcg gtgtgccatc ctgttgggaa cttcagggtt ttgggcaata
      901 tcagtacggc atgaagtttt atggaaaagc ttttcccgat ggtgtagcca aagagaaagg
      961 tatgtataaa tatgagtttg atgtgccgga agcgtggcga agtaaacaga tttttattgt
     1021 atttgaagct tcgatgaccg ataccgaagt gaaaatcaac ggacaaaaag caggcgaagt
     1081 ccatcagggt gccttttacc ggttctcata caacatttca gggcgcgtaa aattcggaca
     1141 gaaaaacctg ctggaagtaa cagtgagcaa agaaagtgag aatgccggtg tgaatctggc
     1201 tgagcgtcgt gccgattact ggaatttcgg aggtattttc cgcccggttt ttctggacgt
     1261 gaaaccggcc aatcacatct cgcaactgac aattgacgcc aaagcagatg gtactttcaa
     1321 tgccaattgc tacctgaacc gaacgctgga tggtgcaagt ataaaaacca ttctgcttga
     1381 tgcaaaagga aataaggtag ctgaaaacag cagtcctgta aaagcggctg cagattgggc
     1441 agatgtgcaa ttcaacgtaa aaaatcccgg gttgtggacg gctgaaaccc ccaaccgcta
     1501 tactgcacag gtttctttat tggccaatga tggaagtgtt ttacaccaaa tatcagaaaa
     1561 atttggtttc cgaaccatcg aaattcgttt gagcgacgga ctttatatca acggcacaaa
     1621 agtgctgatc aaaggcgtaa accgccatag tttccgccct gaaaccgggc gcacactctc
     1681 caaagctaaa aatatcgaag atgtactgct tatcaaaagc atgaacatga atgccgttcg
     1741 cttgtcacac tatccagccg atcctgaatt tttggatgct tgcgattcac tcggattata
     1801 tgttgaaaat gaattaggtg gatggcacgg acattacgat accaccgttg gtacaaagct
     1861 tgccaaagaa atggtggagc gtgatgtgaa tcacccttct gtaatttggt ggagcaacgg
     1921 caacgaaggt ggttggaacg acgaactgaa tggagagttt cataaatacg acttgcaaaa
     1981 acgccctgta attcatccac agggaaattt tggaggtttt gaaaccatgc actatcgctc
     2041 gtatggcgag tcgcaggagt acatgcgtaa accggaaatt tttatgccca ccgaattttt
     2101 gcacggattg tacgatggtg gccacggtgc cggtttgtac gattattggg aaatgatgcg
     2161 gaaacatcca cgttgtgccg gtggattcct ctgggatttg gctgatgaag gacttaaacg
     2221 actggattta aatggaatca tcgataatca gggtaactgg ggggcagatg gagttgttgg
     2281 cccgcacttc gaaaaagaag gaagttatta tactgtgaaa cagatttggt cacctgttca
     2341 ggttatggac aaatctatcg gaaagaactt cgacggaact tttactattg aaaatcgtta
     2401 tgattttctg aatacaaaca cttgccgttt tgaatggaaa caagtgaaat ttactgcttc
     2461 tgctgatgaa aaaggagtag taaaagtact taaacagggc gaaataaaag gaccggatat
     2521 tgatgcacat gcaagcggca agctgagtat caatactacc atcgacccac aaacagaggt
     2581 tttgtacctt actgcaattg attatcgtgg tgaagaattg tggcgctggt ggttccaact
     2641 ccctgtagta aagaaggaaa tagttagcag tggagcagca ccttcaacag agaaaactga
     2701 cgacaaactc atagtgaccg ctggaaaaaa caaatatgct tttagcaata aaaacggcga
     2761 gttgaaggaa gtaagtgttg atggaaaaaa aatcagtttt gctaacggtc cccgctttat
     2821 tgctgcccgt cgagccgatc gctcactgga tcagttttat aaccatgatg atgaacaggc
     2881 taaagctaaa gaccgcacct atacagaatt tacggacgct gctgtttttg ccggattcga
     2941 tgtgaaaacg ttaggcaaca atctgattgt gatggccaat tataaacttg gcaatctgga
     3001 taatgctcaa tggactattt ctcccgatgg gactttgact ctggattata gctacaactt
     3061 tagtgccgtg gtggatttga tgggtgtgaa attcgattat cccgaagaaa aaatgcagca
     3121 caaacgctgg ttgggtgctg gaccgtatcg tgtttggcaa aacagaattc acggaacggt
     3181 ttacgatgtg tgggaaaacg attacaacga ccccgttcca ggcgaatcat tcacatatcc
     3241 ggaatttaaa ggttattttg ccaatgtgaa ttggataaat ctgaaaactt cggaaggaga
     3301 aatcagtatt actaacgaaa cgccaaactc gtatgtaggt gtttacgaac cgcgtgatgg
     3361 acgtgataaa ttgctttaca ctttacctaa aagcggtatc tccattctga acgtgattcc
     3421 ggctgttcgt aacaaagtca actcaacaga tttaaatgga ccttcagcac agccgaaatg
     3481 ggtggatgga gtgtacagtg gacgtattat tttgaaattt aaatagcttt gtagacgctg
     3541 tctggtgcaa gcatgctgac aggtgataag atactccaaa cccggcagca gtggaagaca
     3601 cagtcaacat tttgtaaata agaaaaatga aaaaattcaa actcatacta ttacttgttt
     3661 cagtagttgg attggtcgaa gcacaatctt ccctttttga gaacttcaaa aacccgtctg
     3721 ctgaagctaa gccatggact ttctggtact ggatgcatgg agccgtgtcg aaagaaggta
     3781 tccgtgccga cctcaaagcg atgcaagaaa tcggtttagg tggtgcttac ctaatgccta
     3841 ttaagggtgt tgaagggtca acttatcctc gtccggttaa tcagctttcg cccgaatggt
     3901 gggagatggt gcgctacagc tttcagatgg ccgacagtct ggggttgaaa atgggcatgc
     3961 atatttccga tggctttgca ctggccggtg gtccttggat taagccatcc gagtcgatgc
     4021 aaaaagtggt ttttaccgat acaatcataa aaggaggtaa aataatcggc ttgcaactcc
     4081 ggcagcctga agctgttcag aattattacg aagatattgc tgtttatgca ttgccagtta
     4141 aagaactacc tttaagaggg agcttttcga taaagtccaa caaccccgat gatacaatcc
     4201 cattttctat gcagggaaaa gattttcgtt cggaaaaacc atgctacatt caatacacct
     4261 acgaaaagcc gtttacactc agaagcatag aaattatcca tgccggaaat aacatccaat
     4321 cgcaacggtt ggcagtttta gcaagtgatg atggagtcaa ttactgcttg attaaacagc
     4381 tcgttccacc acgtcagggg tggcaaaaca caggttttaa taccactttt tccattcggg
     4441 caaccaaagc aaaatacttc cgcttttcgt ggacgcccga aggttcagag cccggaagcg
     4501 aagaactgga tgctgccaaa tggaaaccaa cactgaaaat caaatacatt cacctgagct
     4561 ccgaaccgag aatcaatagt tgggaaggaa aagccggact tgtttggcgc attgccgacg
     4621 aaacttcggc tcaggaaatt acgaataaag aatgtgcacc aacgaaaaag gtcattaatc
     4681 taacgtcgta tttcaaagac ggtgacctga cttgcaaact accgaaaggc aattggcgta
     4741 ttttgcgtat ggggcatact tctaccggcc tcaccaatgc aacagcaggc ggcggaaaag
     4801 gactagaatg tgataaattc tccgaaaagg ccgttcaaaa acaatttgat aactggtttg
     4861 gagcgacatt tgccaaaacg gataaagagt tggcgcagcg cgtattgaaa tttatgcata
     4921 tcgacagttg ggaatgtggc agtcagaact ggagccgcaa ttttgttacc gaattccagg
     4981 ctcgtcgcgg ttataattta atgccgtatc tgcccttgtt ggccggatat ccgatt
//
LOCUS       DATDNM010000709         2782 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1475400, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000709 DATDNM010000000
VERSION     DATDNM010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2782
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1475400"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..836)
                     /locus_tag="VI413_11960"
     CDS             complement(120..836)
                     /locus_tag="VI413_11960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915383.1"
                     /translation="MKKYNFLLIGLISLFMFSCVNEEGQGGVSIVQGKVFKVLHPNDN
                     FTLEADTFPAAKEDVYIVYGDEPVYGDKMETGYDGFYRFKYLTKGTYKVYAYSTLTDG
                     RKVANIDTVTVADGETKNVQNIYIHEGKSYETSYIKGTVNVKYYNKGNWYPQSIFAGY
                     DVRAYIRVKGAAYHFDEARTGLDGAFVFQNLKPGTYEVFVFSEKVSTEVVEPVIQEVT
                     IDNVGVIKTIDTPFLVNINV"
     gene            complement(1169..1669)
                     /locus_tag="VI413_11965"
                     /pseudo
     CDS             complement(1169..1669)
                     /locus_tag="VI413_11965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007758107.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
     gene            complement(2441..>2782)
                     /locus_tag="VI413_11970"
     CDS             complement(2441..>2782)
                     /locus_tag="VI413_11970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915384.1"
                     /translation="ESGMMLYEHGDENFFLMMIQPPKRVIEDEIPPREYIFIMDVSGS
                     MQGFPISISKKLLRNLIVNLKPTDKFNVVLFAGYTGALGEESVDATPENVDRAIRLID
                     NEQGGGGTELL"
BASE COUNT          818 a          669 c          469 g          826 t
ORIGIN      
        1 gggtgaagtt tgtgcaaatg cagtaacaat aaatcctatc agaaaaaagg ataatagact
       61 tgttcgtaat gaaattggtc tcatcaaatt atttatttag ttattagatt ttacaaaaat
      121 cagacattaa tattaacaag aaacggagtg tcaattgttt ttataacccc aacgttatca
      181 atagtcactt cctgaataac tggctctaca acctccgtac tcactttttc agagaacaca
      241 aacacttcgt aagttcccgg tttcagattc tggaatacaa acgcaccatc aagaccggtt
      301 ctggcttcat caaaatgata agcagctcct ttcacacgta tataggcacg aacatcatag
      361 cctgcaaaaa ttgactgagg ataccaatta cctttattat aatattttac atttacagtt
      421 ccttttatgt aagaagtctc ataagattta ccctcatgaa tataaatatt ctgaacattt
      481 ttggtttcac catcggctac agttacagta tcaatgtttg ccactttgcg cccatccgtc
      541 aaagtgctgt aggcatacac tttataagtc ccctttgtaa ggtatttaaa acgataaaac
      601 ccatcatatc ctgtttccat tttatcacca taaacaggtt cgtcgccata aacaatataa
      661 acatcctctt tggcagcagg aaatgtgtcg gcctccagcg taaaattatc attggggtga
      721 agcactttaa aaaccttacc ctgaactatt gaaactccac cctgcccttc ttcgttaaca
      781 cacgaaaaca taaacaatga aattaatccg attaaaagaa agttgtattt tttcacgata
      841 gtataattaa gttgagaaat tccattttct gattttccac gaaagaaccg gtatgaattt
      901 gcaataaatc aaacgccctg acttcttttt gataaaagca atacatttat attacatttt
      961 tattaaatcg ctgcaaaagt aacttttttt ggaaaataac aagccgataa tcagcagaaa
     1021 ctgcttaaaa acatacgaaa cactcacatt tgaatttatt ttcaccccgg atatttttaa
     1081 gctcccaaca aacgtcaatc ctttatctaa aaaagaaata aaccagaatg aaattcaccc
     1141 cggtttatca attgatttgc aaaacaactt attccaactt gaactttacg ggaaatgtat
     1201 accaaactgc caccgaaagt ccgttctgct tccccgggat aaactttggc aacgacttaa
     1261 tgattctgat cgcttcttta tcgcaagccg gatcgaggct tcgcagaatt tggacatgcg
     1321 aaacagagcc atctttttct acccggaacc ggactattac cgtaccctga attccatttt
     1381 cctgagcaat tgtaggataa gtaagattct taccgacaaa accggctaag gcactttcac
     1441 caccagggaa tgccggcatt tgttcaatga catcgtacac tttttcttct tctacctggg
     1501 taacatcaga cctgacgtca gctatatctt tgccgttcac gtcatcattt cctattacat
     1561 cggcaaccga aaccacccct ttgacattag taagctcttc ctgacttttc atttcatctt
     1621 ctccaacaac ttcttcatcc ttttttataa caggtgctgt aaacgaaact cgttttaacg
     1681 tccccactgc actattcggt acacctttcg gaagcggaag cggttgatga acagttacca
     1741 gttttttgtc tttatccacc cggtagtctt cgtcaatggc aataaacgaa gtgtattgtg
     1801 tcatcagccc gtatttcagc cccaactgtg taatttcatt tttgataaaa ccatcaatag
     1861 tcgtctgtcc gtaagcttga taattcgacg aataatagtc cagcaactta attcgttcgc
     1921 gggcccacaa atagcggatt gcggcgaaag ccggatttgg tttcacagcc gacaaatcga
     1981 atgatttttc atacggttgc ttgccggtca ttccgctaac cgtgatcgtt cctgcatgat
     2041 ttcctttata ctttccaaaa atgataaccg gcctttcggc aagcatgtcg ggcgttgatc
     2101 cgggttcgat gtcatacgca gcaatatccc caaaatcggt ttttatctga ctcaacacag
     2161 gcgtattaat atatgtccgg aatttttctg ccagtttatc tgccacctct ggtctgtcca
     2221 ctatcatcgg ttcgccattc cccataaaag ccattccttc gagcaagtgc cggtttacgc
     2281 tagtcccgat tccgaagcag aaaaagttgc tgttgtcgtt atggctgcgc accatctcga
     2341 acgattcttt ttccacatcc acatatccgt cggttaccag tacaaacgat cgcgagcaag
     2401 catcgctgga ccgcggaatc tgataggccc gctttaaagc ctacaacaat tcggtgccac
     2461 cgccaccctg ttcattgtcg atcaaccgga tagcacggtc aacattttcg ggggtagcat
     2521 ctaccgattc ttcgccaaga gctcccgtat atccggcaaa caacaccacg ttgaacttat
     2581 cagtcggttt gagattgaca atcaggttgc gaagcaattt cttggaaatg ctaatcggga
     2641 aaccctgcat cgaccccgaa acatccataa tgaagatata ctcgcgcggt ggaatttcgt
     2701 cctctatcac ccttttgggc ggctgtatca tcatcagaaa aaagttttca tccccatgct
     2761 cataaagcat catacccgat tc
//
LOCUS       DATDNM010000710         2972 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_513132, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000710 DATDNM010000000
VERSION     DATDNM010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2972
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513132"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..328
                     /locus_tag="VI413_11975"
     CDS             <1..328
                     /locus_tag="VI413_11975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEY6915385.1"
                     /translation="SMFPQHNRFMCEGVKVWLTHIGGYPGKYDPLVRPAIFQQPPKLF
                     VCGHSHILKVQNDRTLDLLHINPGAAGKYGFHKVQTLIRIEIDGDKIQNLEVIELKSK
                     EPENLK"
     gene            405..956
                     /locus_tag="VI413_11980"
     CDS             405..956
                     /locus_tag="VI413_11980"
                     /inference="COORDINATES: protein motif:HMM:NF019911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEGA domain-containing protein"
                     /protein_id="HEY6915386.1"
                     /translation="MKKKFTSKIITLMLAIAILFSGCASSTLIQSYPTDARVYINGEF
                     VGHTPYWYSDTKIMGSITNIDLVKDGYEPLYTSIQRAERIDVAALVGGFYFLAPFLWS
                     LRYAPVHNYELIPLRQQPVSDEVVAPEPTPQIQPVEQVQQPQPETVSPKIQKLRELKQ
                     MLDEKLISKDDFEKQKQKILDEK"
     gene            1005..1412
                     /gene="bamE"
                     /locus_tag="VI413_11985"
     CDS             1005..1412
                     /gene="bamE"
                     /locus_tag="VI413_11985"
                     /inference="COORDINATES: protein motif:HMM:NF016258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HEY6915387.1"
                     /translation="MKYLRLNLVFLLILFLLSSCSMFRELKENSAREKTVKENQGKIE
                     VGMSKDEVIKLLGTPCNVQFEEKNEALQYCYTTAYNDKLMNNHYVVVWLNDGVVTGLT
                     TYNDTSFDFCTNGFQSVYWENSHGYLLERRRWR"
     gene            complement(1484..2968)
                     /locus_tag="VI413_11990"
     CDS             complement(1484..2968)
                     /locus_tag="VI413_11990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HEY6915388.1"
                     /translation="MSERFSYYGMRAIFTLYLIKALLMDKELASTIYGNYTGLVYLTP
                     LIGGYVADRYLGMRRSILWGAILMILGQVFMFTSALYYQSGDISHWFMYTGLAALIFG
                     NGFFKPNITTIVGSLYEKGDNRLDSAYTIFYMGVNVGAFIAPLLCGFLGDTGNPSDFK
                     WGFLAAAVSMLLSLILFVGWKNKYLIGPDGKQLGIVAAHKEAAHKSEKETAPQKNPKQ
                     NIVEFLAWTLGEVALFCAFHFGLDFDIIGATIFSICIIIPAYVISDRSLTKIERERIW
                     VIYIIAFFVIFFWAAFEQAGASLTYFAEEQTNRVILGWTMPASFFQSFNPVFIVLLGL
                     VFSNLWIQLGKKNMDPSSPIKQAMGLFFLAIGYLVIAFGVKDAAPGVRVSILWLTGLY
                     FIHTMGELMLSPIGLSMVNKLAPLRFASLLMGVWYMSMATANKFAGILSGLYPEAGKP
                     KFFIGIQIATLYDFFMLFVVIAGVASIILFGLSKRLEKLMGGVK"
BASE COUNT          938 a          592 c          597 g          845 t
ORIGIN      
        1 ttcaatgttt ccgcaacata accggtttat gtgcgaagga gtgaaagtct ggctcaccca
       61 tattggcggt tatccgggga aatatgatcc gttggtgcgt cctgccattt ttcagcaacc
      121 accaaaacta tttgtatgcg ggcattcgca tattctgaaa gtgcagaacg atagaacgct
      181 cgatttgctt catattaacc ccggagccgc cgggaaatat ggctttcaca aagttcaaac
      241 gcttatacgt attgagattg atggagataa aattcagaat ttggaagtga ttgaattaaa
      301 gtcgaaagag cctgaaaatt tgaagtaatc gatcgaatta ctggcattat ttttgttatt
      361 ttacaacctg aataaatttt attaacctgt aaaattgatt taatatgaag aagaaattta
      421 ccagcaaaat cataactttg atgttggcaa ttgccattct attttcgggt tgtgccagta
      481 gtactctgat tcaatcttac cccactgatg cacgtgtgta tattaatggt gaatttgttg
      541 gtcatacgcc ttattggtat agtgatacca aaataatggg aagtattacc aatatcgatt
      601 tggtaaaaga tgggtatgaa cctctgtata ccagcattca acgtgccgag cgaatagatg
      661 tggctgctct tgtgggtggt ttttattttt tagctccttt tttgtggagt ctccgttacg
      721 ctccggttca taattacgaa ttaattcctc ttcgccaaca acctgtttcg gatgaagttg
      781 ttgcaccaga accaactccg caaatccaac ctgttgaaca agttcaacag cctcagcccg
      841 aaactgtatc gccaaagatt cagaaactaa gggaacttaa acaaatgttg gatgagaaac
      901 tgatttcaaa agatgatttt gaaaaacaaa aacaaaaaat tctggacgaa aagtaattat
      961 ctgatcgcaa attcctgtaa attaatatgt aaaatactaa agctatgaag tacttaagac
     1021 ttaatctcgt gttcttgtta attttatttt tacttagttc atgctctatg tttcgcgagt
     1081 tgaaagaaaa tagtgccagg gagaaaactg tcaaagaaaa ccagggcaaa attgaagtgg
     1141 ggatgagcaa agatgaggtg attaagcttt tgggaacacc ttgcaatgtt cagttcgaag
     1201 agaaaaacga ggcgttgcag tattgttata caactgctta taatgataaa ttaatgaaca
     1261 atcattatgt cgtagtctgg ctcaatgatg gtgttgtaac tggcctgaca acctacaatg
     1321 atacctcgtt cgatttttgt acgaatggtt ttcagtcagt ttattgggaa aactcccatg
     1381 gatatctgtt ggagagaaga agatggagat gaacatttga ttatacaaaa aaatggctgg
     1441 caaaatttat ttatgccagc catttttgtt tttatgcgga aacttatttt actccaccca
     1501 tcagtttctc cagtcttttg gagagcccga aaaggatgat tgaggctact ccggcaatta
     1561 ccacaaacag catgaaaaaa tcatacagcg ttgcaatctg gattccaatg aaaaatttgg
     1621 gttttcccgc ttcgggatat aatccactaa gtatgccagc aaatttatta gctgttgcca
     1681 tagacatata ccaaactccc atcaataaag atgcaaaacg gagtggcgcc agtttgttta
     1741 ccatcgacaa acctattggc gacagcatta attctcccat tgtatgaata aaatacaatc
     1801 cggtgagcca caggatgctc actctaactc cgggagctgc atctttcaca ccaaatgcaa
     1861 taactaaata tccgattgcc agaaagaaaa gacccatggc ttgttttata ggtgaagatg
     1921 gatccatgtt ctttttgccc aattgaatcc ataagttaga aaaaaccaag cctaataata
     1981 cgataaatac agggttgaaa gactgaaaga aactggctgg cattgtccag cccaaaatca
     2041 cccggtttgt ttgttcctca gcaaaatagg taagcgatgc tcctgcctgt tcaaaggctg
     2101 cccaaaagaa gattacgaaa aaggcaataa tgtaaattac ccaaattcgc tcgcgctcaa
     2161 tttttgttag cgaccggtcc gaaattacat aagccgggat aatgatacaa attgagaaaa
     2221 ttgttgctcc aattatatca aaatccaacc cgaagtgaaa tgcgcagaac aaagcaactt
     2281 cacctaaagt ccaggccagg aattcgacaa tgttctgttt cggatttttt tgaggagccg
     2341 tttctttttc agatttgtgt gcagcctctt tatgagccgc tacaattccc agttgtttgc
     2401 cgtctggtcc tatcaggtat ttgtttttcc aacctacaaa taatatcaaa ctcagcaaca
     2461 tgcttactgc cgcagccaga aaaccccatt tgaagtcaga cggattgccc gtgtcgccca
     2521 ggaagccgca aagcaaagga gcaatgaaag cgccgacatt tacccccatg taaaagatgg
     2581 tataagccga atcgagcctg ttgtctcctt tttcgtaaag gcttcccaca atggtggtta
     2641 tgtttggttt gaaaaatccg ttcccgaaaa tcagtgcagc cagtccggtg tacataaacc
     2701 agtgcgaaat atccccgctt tgatagtaaa gtgcactggt aaacataaat acttgtccca
     2761 aaatcattag gatggcaccc cacaaaatgg aacgtcgcat tcctaaatac cggtccgcaa
     2821 cgtacccgcc aatcagggga gtgaggtata ccaatccggt ataatttcca taaattgtag
     2881 aggcaagctc tttatccatt aataaagctt tgatgagata aagcgtaaaa atagcgcgca
     2941 tgccataata gctgaatcgc tcggacatgg cc
//
LOCUS       DATDNM010000711         2257 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1153359, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000711 DATDNM010000000
VERSION     DATDNM010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1153359"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..206)
                     /locus_tag="VI413_11995"
     CDS             complement(<1..206)
                     /locus_tag="VI413_11995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005834234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6915389.1"
                     /translation="MSFKRYFLVIELVWILISTVSGESYYVFHHLTTNDGLSNNSVRH
                     ILKDSYGFLWIGTEFGLNRYDGYN"
     gene            complement(474..>2257)
                     /locus_tag="VI413_12000"
     CDS             complement(474..>2257)
                     /locus_tag="VI413_12000"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018464420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009341 - beta-galactosidase complex
                     [Evidence IEA];
                     GO_function: GO:0004565 - beta-galactosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEY6915390.1"
                     /translation="LDQAGIKVILDIALHPVPIWLHKKFPSIDVTNPGGNAQYPNHRY
                     MDDIGDPMYQKYALRYTDSLTKHYAKHPALLAFGIDNESGDGPISYSETVRKRFVSWL
                     EKKYTTLDNLNKAWATQRWSRRLNRFDEVGLPVTGAKNGAPEKILDFKRFISEEVNLL
                     LFKVLDKVNQNAPGVLTNSNVWYYSDKYFDYSEIAYSGKMSRGGEGFYPGNTLVTNWG
                     VMNSLFGISRIQFESKNPFWCSEFTTMTAVPNSIRKSAYATLMYGNQMVCGWTWQSMW
                     AGEEQYLEGMLDWDGVPNRKYDEYKKMATEFKKIEKYFPYKPQPEVGVAFSFPSQMAS
                     SSFPEQHDSQVQNCWNLFYYRNMDANVVEISRSSLNYKLLFVPGVTVMDDKTATKIRE
                     FVNNGGTVIMTSNSALVDASGQVFKTTHPGQLSDVFGIRIGSFEETESMNEISRKAYN
                     GKKLEFTYKGKAVDTQSARFDVIDPKGAEIIGSITSLDKDYPIMTVNKYGKGRAIYVG
                     LAADGNVLNPLLDELIVELGIKKGPDVPSGVMARQIDKNHYLYLNVTGEPKTITLGRK
                     SKSILSDKEYSGDITISPYEPEFVQIY"
BASE COUNT          677 a          494 c          387 g          699 t
ORIGIN      
        1 aagttataac catcatatct gtttaagcca aactcagtac caatccacaa aaaaccatag
       61 ctgtctttca atatatgtct cacagagtta tttgaaaggc catcatttgt agttaaatgg
      121 tgaaaaacat aataagattc acccgaaaca gttgaaatta gtatccaaac taattctatg
      181 acaagaaaat atcttttgaa actcattttt aatatagtat tatttaagac ttaagacgtg
      241 atttcaataa agcaaagata tacaatcttt attcattagc attgtattta ttctataaga
      301 taactttaca taataaatat tttgtaatcg ggaataaaac tgtggaatga attaattatc
      361 tgagtgcaga gtaaatacat ttttttagcc atccccatcc atatatgctg gaaggaaatg
      421 gctaaaattc atcagtgctg attattcaat tcaacaatag acattcttat atcttaatat
      481 atttgaacaa actcgggttc ataaggagaa atagttatat cacctgagta ctctttatcg
      541 gacaagatac ttttagattt acgtcccaac gtaatggttt taggttcacc tgtaacattc
      601 agatataagt agtggttttt atctatttgt cttgccatta cacccgatgg cacgtccgga
      661 ccttttttaa tgcccagttc gacgatcaat tcatcaagca aaggattgag aacatttcca
      721 tcagcagcca agccaacata aatagcgcga cctttaccat atttatttac ggtcataatc
      781 gggtaatctt tgtccagact ggtaatgcta ccgattattt cagctccttt cgggtcaata
      841 acatcgaacc gtgcagactg cgtatcaacg gcttttcctt tgtatgtaaa ctccagtttc
      901 ttcccattat aagcttttcg cgaaatctca ttcatcgact cggtttcttc gaaactacca
      961 atgcgaatgc cgaacacatc gctcaattgt cccgggtgag ttgttttaaa tacttgcccc
     1021 gaagcatcca ctaaagccga attgctcgtc atgattaccg ttcctccatt gttcacaaat
     1081 tcgcggattt tggtagcggt tttgtcgtcc attacggtca ccccgggaac aaaaagcaat
     1141 ttataattca agctgcttcg gctaatttca accacattgg catccatatt gcgataataa
     1201 aacaaattcc aacagttttg aacctgactg tcgtgctgtt ccggaaacga actgcttgcc
     1261 atctggcttg gaaaagagaa ggccacacct acctcaggct gaggcttata ggggaaatac
     1321 ttttcaatct ttttaaattc ggtggccatc tttttatatt cgtcgtattt cctgttcggt
     1381 acaccatccc aatccagcat accttccagg tattgttctt ctcctgccca catactttgc
     1441 catgtccatc cgcaaaccat ctgatttcca tacatcaacg tggcatacgc cgatttacga
     1501 attgaattag gcactgcggt cattgttgta aactcactgc accagaaagg atttttgctt
     1561 tcaaactgaa tccgggaaat accgaaaaga gaattcatta caccccagtt tgttaccaaa
     1621 gtatttccgg gataaaatcc ttctccaccc cgtgacattt tgccggaata agcaatctct
     1681 gaataatcga aatacttatc gctataatac cagacatttg aattggtcaa aacacccggt
     1741 gcattttggt ttaccttatc aagcacctta aacagcagca gattcacttc ttcggatata
     1801 aaacgcttga aatccaatat cttttcaggt gctccgtttt tagcaccggt aaccggcaat
     1861 ccaacttcat caaaacggtt aagcctacgt gaccaacgct gggtagccca ggctttgttt
     1921 aaattgtcaa gtgtagtgta ttttttctcc aaccagctaa caaatctttt tctgaccgtt
     1981 tctgaataag atattggtcc atcaccggac tcgttgtcaa tcccaaaagc taagagagcc
     2041 gggtgtttag cataatgctt ggtaagagaa tcggtatagc gcaaagcata tttctggtac
     2101 atcggatctc caatatcgtc catatagcga tggttcgggt attgcgcatt acctcccgga
     2161 ttagtaacat caatggaagg aaattttttg tgtaaccaaa taggcaccgg atgaagtgca
     2221 atgtcaagga tgaccttaat tccagcctga tccagct
//
LOCUS       DATDNM010000712         5847 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_193306, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000712 DATDNM010000000
VERSION     DATDNM010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5847
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193306"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1536
                     /locus_tag="VI413_12005"
     CDS             <1..1536
                     /locus_tag="VI413_12005"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HEY6915391.1"
                     /translation="SIRKVIYYINTDASLSTDLANKDKLDTVQFRDFILVTPKNRILK
                     LDALVQNTFINPSTLYSDDAVERTYQSLNSLGPIKYVNISFKESESNLLDCYIVIVPS
                     KTVSLSTELEATYTDGFWGGAASINTVNRNVFKGAETLSIQLHGAFEKQDSTIWAQEF
                     GIQSGLKFPRVLLPFGSYDFKRSIHANTEFTGALSYLNRPGEFTTTNAGAGINYSWNR
                     QQYHNVFQPFDLSYVRFLDVNDVFRSTYLNDTAPRYNPYNYKDHLIMRMGYTGSYSTF
                     NANRPLKDYSSARYSVESAGNFLYAMSNLLGASKVDGAYQLFKVRYSQYIKGEYNVTH
                     HQIYDKENRFVYHLGVGLGVPYGNANVIPYEKRFYSGGANSVRGWGESQLGPGVYKRI
                     NSKARDFNQVGDIKLDMNMEYRAKMFWLMEGALFLDAGNVWTIKEYETQPLGQFKLDS
                     FMEQIAIAYGAGLRFDFSFFIARIDLGIKLYDPVLGRTERWRVSPKFSDDFAFHFAIG
                     YPF"
     gene            complement(1538..2224)
                     /locus_tag="VI413_12010"
     CDS             complement(1538..2224)
                     /locus_tag="VI413_12010"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008861430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEY6915392.1"
                     /translation="MKKAKITANDSLLFDDGIGLKANYSKFTYECGCDEAGRGCLAGP
                     VVAAAVILPANFDCPLLNDSKQLTETERDSLRPIIEKEALAWAVAEVDNNEIDEINIL
                     NASILAMHRAIDKLSIRPEFIIVDGNKFKLYAGIHHQTIVKGDSKYLSIAAASVLAKT
                     HRDEIMQRLHAEFPGYDWAKNKAYPTPKHRAAIRKIGTTPYHRMSYDMLGERKAEKLA
                     LMKARKEAKK"
     gene            complement(2196..2729)
                     /locus_tag="VI413_12015"
     CDS             complement(2196..2729)
                     /locus_tag="VI413_12015"
                     /inference="COORDINATES: protein motif:HMM:NF014704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEY6915393.1"
                     /translation="MNKLDLILLIPIGLGFIFGLFKGLIKEVTSLAAIVLGIYGAKLL
                     APFVSGLLVSLFNFSEKTAMPMSYLVLFVGIAIGLLILAKSLEKIFDSMSLGGLNKLF
                     GGVFGALKYALIVSVLLIVFNAIDSRFSLVGSETKENSFMYKPLLNLAPTLWDEAKKE
                     HKSKNEASDEESENYGK"
     gene            2992..4356
                     /locus_tag="VI413_12020"
     CDS             2992..4356
                     /locus_tag="VI413_12020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915394.1"
                     /translation="MKTKVASLLVVLLISTISCTAQRRITVEAQNNDISNNLDLQAVA
                     STFGESRDLEDFERRLNDYDSQISNLDLNNDGEVDYLRVIENMENNVHVVVIQAVLDR
                     DVFQDVATIVVERRQNRRTVVQIIGDPYLYGNDYIIEPVYVYTPSIYSFFWGYNYQRW
                     YSPYYYGYYPRYYRYRSPFEVNVYLSHVYSHINHNHRYYYSDRYRNEYAERLHNSMRR
                     NDYGTRYPDRNFSSRNGSISNKREFDRTRSNNTIYERSGSSRQSRAIDNNTGSRNNSY
                     ESGSRNVERRNTDNSTNQRRNSDNSVNQRINTPSTNSRNSGVNRTQDDVYQNRTSRPE
                     NQGSRNNNSRVERNTQTYSAPANRSTEMNRNSNNGGYQQRPANNTNVERRQPAENREN
                     TNTRPAPVMNQPSRQNENRPAPVVNQPSRSSEQRSVERKPAENNQNRESRSERGSRNN
                     SERR"
     gene            4524..5444
                     /locus_tag="VI413_12025"
     CDS             4524..5444
                     /locus_tag="VI413_12025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEY6915395.1"
                     /translation="MPIPTSRTKETASVKIEMGKCTGCGTCVSVCKDFNFEIVDKKVT
                     ISDKNVFGCIACGHCMMACPTGAIAVEGRTLSPVQLFDLPDKSMVPSYDSLLAMLQRR
                     RSIREFKDIPVEAEKINQILEAAQTAPMGIPPSDVHVLVLENKKQVRIFAEEFSNYLK
                     NIRWMSSNWFLTLMRPFWGKANDEMMSEFIKPVFNIYVDDMAKGSNWINYDAPLAMYF
                     YGSPYTDPADPIIAATYAMLAGESLGLGTCMLGAIHPFIQNGKKARKFREKWGIKYPS
                     REGLVVIFGYADVHYNKGVKRTFADIHRVS"
     gene            complement(5491..>5847)
                     /locus_tag="VI413_12030"
     CDS             complement(5491..>5847)
                     /locus_tag="VI413_12030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915396.1"
                     /translation="VQPNTDFDVVAVVSGLEPQRTIFEDYLILEYKNRSKKTLIVRGQ
                     PQSSSYQRHIGNVTLVPHLPDAALAEILLGARKIICRSGYSSIMDLDALGCLQKAEWV
                     PTPGQTEQEYLYSIHS"
BASE COUNT         1903 a         1187 c         1158 g         1599 t
ORIGIN      
        1 tccattcgca aagttatata ttacatcaac accgatgcgt cattatcaac tgatttagcc
       61 aataaagaca agttagacac ggttcagttc agggatttta ttctggtcac acccaaaaat
      121 cgtattctga aactggatgc actggttcaa aatacattta tcaatccgag cactttatac
      181 agcgacgatg ccgttgaacg aacctatcag tcgttaaact cgttaggtcc tattaaatat
      241 gtgaatatta gttttaaaga gtctgaaagt aatctactgg attgttatat cgtcatagtt
      301 ccgtcaaaaa cagtttcact atcaacagag ttggaagcaa catacacaga tggtttttgg
      361 ggaggtgctg cgagcattaa tacagtaaac cgaaatgtgt ttaaaggtgc tgaaacgctg
      421 tccattcaac ttcatggagc ttttgaaaaa caagacagta ctatctgggc acaagaattt
      481 ggaatccagt caggattaaa gtttccacgg gttttacttc cgtttggcag ttatgatttc
      541 aaacggagta ttcatgccaa tacagaattt acgggggcat tgagttattt gaatcgcccg
      601 ggcgagttta ccaccaccaa tgcgggtgcc ggaatcaatt actcatggaa tcgccagcaa
      661 tatcacaatg tcttccaacc atttgattta agctatgtcc ggtttttaga tgtcaacgat
      721 gtatttcgta gtacctatct aaatgacacc gccccaagat acaatccata caattataaa
      781 gatcacctta ttatgcgtat gggttataca ggttcatatt caactttcaa cgcaaaccga
      841 ccattgaaag attattcatc agcacgttac agcgtagaaa gtgcgggtaa ttttttatat
      901 gcaatgagta atctgctggg agcaagcaaa gtagatggag cttaccaatt atttaaagtg
      961 cgttattcgc aatatattaa gggcgaatac aatgtcacac accatcaaat ttacgataaa
     1021 gagaatcggt ttgtatacca tctcggagta ggtttgggag ttccttacgg caatgccaat
     1081 gtaattcctt acgaaaaacg gttttacagt ggtggcgcca atagtgttag aggttggggc
     1141 gaaagtcaac tcggccccgg agtttataaa aggattaaca gtaaagcccg cgatttcaac
     1201 caggtaggcg atattaaact ggatatgaat atggaatacc gtgccaaaat gttctggtta
     1261 atggagggtg cattatttct tgatgccgga aatgtctgga cgataaaaga atatgaaacc
     1321 caaccgcttg gacaattcaa acttgactcg ttcatggagc aaatagccat tgcctacgga
     1381 gcaggcctgc gatttgactt ttcgttcttt attgcgcgta tagacttggg aataaaacta
     1441 tatgaccctg tacttggcag aaccgaaaga tggcgggtca gtcctaaatt ttctgatgac
     1501 tttgcatttc attttgccat cggctatcct ttctaactta tttctttgct tcttttctgg
     1561 ccttcatcaa tgccagtttc tctgcttttc tttctcctag catatcgtag ctcatacggt
     1621 gataaggtgt tgtaccaatt tttcggatag cggctctgtg ttttggcgtc gggtatgctt
     1681 tatttttagc ccaatcatat ccgggaaatt cagcatgcag gcgttgcatg atttcatcac
     1741 ggtgcgtttt ggccagcacc gaagctgccg caatggacag gtatttacta tcacctttca
     1801 caatagtttg gtgatgaatg ccggcgtaaa gtttgaattt atttccatcc acaataataa
     1861 attcaggacg aatggaaagt ttatcaatag cccgatgcat ggccaaaata gaagcattca
     1921 aaatatttat ctcatcaatt tcgttattgt caacttccgc aaccgcccat gccaatgctt
     1981 ctttttcaat tataggccgc agcgaatccc gttccgtttc agtaagttgc tttgagtcgt
     2041 tcaacaacgg acaatcgaaa ttagcaggta aaataacggc tgctgctacg accggcccag
     2101 ccaggcaacc gcgtccggct tcgtcgcaac cacattcgta cgtaaattta gaataattgg
     2161 cttttaatcc aatgccatca tcaaaaagca aagaatcatt tgccgtaatt ttcgctttct
     2221 tcatcagatg cttcattttt ggatttatgt tcttttttgg cttcatccca aagtgtagga
     2281 gccagattca ataatggttt atacataaag gaattttcct tggtttcgga gcctactaat
     2341 gaaaaccggc tgtcaatagc attgaaaact atcaacaaaa cgctcacaat cagcgcatac
     2401 tttaacgctc caaaaactcc tccaaacagt ttattcaatc ctcccaatga catggaatca
     2461 aatatctttt cgagtgattt tgccaatata agcaatccaa tggcaatgcc cacaaaaagc
     2521 accagataag acattggcat ggcagttttt tctgaaaaat tgaacaaact aaccagtaaa
     2581 cccgaaacaa atggcgccaa tagttttgcc ccataaattc ccaatacaat ggcagcaagc
     2641 gatgtaactt cctttatcaa tcctttgaaa aggccaaaaa taaatcccaa cccaatggga
     2701 attaaaagaa tcaggtccag tttattcata atcagaaaaa tcttgttgtg atgcaaagat
     2761 ataaaaattc aacggatatt attttaaaaa tctaaagaca gcaataatac ctcaacactc
     2821 cataatcaat tggtatgcaa ataaatacta ccaattaaat tacataaaac caacctaaaa
     2881 aatctgcaga aaatttttgg cacagaaatt ggataaggac taacacaacc aaaaaacatt
     2941 atccggttaa gtccggaaaa catagtattc acagctttaa aatttacgat tatgaaaaca
     3001 aaagtagcaa gccttttagt ggttttattg atatccacta tttcatgtac ggcacaaaga
     3061 agaattacgg ttgaagctca gaacaatgat attagcaata atctcgattt acaagctgtg
     3121 gcttctacct ttggagaatc aagagatttg gaagattttg aaagacgact gaacgattac
     3181 gacagccaga tttcgaatct ggacttaaac aacgatggtg aagttgatta ccttcgtgtt
     3241 attgaaaata tggaaaacaa cgttcacgta gtggttattc aagccgtatt ggacagagat
     3301 gtttttcagg atgtagcaac cattgtagtt gaaagaagac aaaaccgcag aactgtagtg
     3361 caaataatcg gcgaccctta tctttatggg aatgactaca ttatcgaacc ggtttacgtt
     3421 tacacacctt cgatttattc tttcttctgg ggttataact atcaaagatg gtattcacct
     3481 tattattacg gatattatcc acgctactat cgctatcgta gtccgttcga agtgaatgtc
     3541 tacttatcac atgtttattc gcacattaac cataaccata ggtactatta ttcagatcgt
     3601 tacagaaatg aatatgcaga aaggttacac aattcgatga gaagaaatga ctacggaacc
     3661 agatatccgg atcggaattt cagcagccgc aatggaagta tctccaacaa aagggaattt
     3721 gatagaacac gtagcaataa cactatttat gaacgttcgg gaagcagcag acaaagcaga
     3781 gcaatagaca ataacaccgg ttcaagaaat aatagctacg aaagcggatc aagaaatgtg
     3841 gaaagaagaa acacagacaa tagcacaaac caaagaagaa actctgacaa cagcgtaaat
     3901 caacgaataa atacaccttc gacaaatagc cggaattcag gcgttaaccg gactcaggac
     3961 gatgtgtatc aaaaccggac ttcacgtcct gaaaatcagg gaagcagaaa taataacagc
     4021 cgtgtggaac gtaacacaca aacttattca gctcctgcaa acagaagtac agagatgaac
     4081 cggaacagca ataacggagg ttatcaacaa cgtccggcga acaatacaaa cgtggaaaga
     4141 agacaacctg cagaaaaccg tgaaaataca aatacaagac cggctcctgt tatgaaccaa
     4201 ccaagcagac aaaatgaaaa cagacctgca ccggttgtaa atcaacctag cagatcgtca
     4261 gaacaaagat cagtagaacg caaaccggct gaaaataacc aaaacagaga atcaagatct
     4321 gaaagaggaa gtcggaacaa ctcagaaaga agataaaaga aggtaattaa aaaattaaga
     4381 ttagtttagt aaacggtgac cgttgggaga ttgcgaaatt tcccaacggt ttttttattc
     4441 agggagaggc actttgagaa aaatactata attttgtcga agcaattttc agctactaat
     4501 tcttcattat taattaattc gatatgccca ttccaacatc cagaactaaa gaaacagcct
     4561 cagtcaaaat tgagatggga aaatgcacag gttgcggaac ctgcgtatcg gtttgtaaag
     4621 actttaattt cgagatagtc gataaaaaag taacgatatc agataaaaac gtttttggct
     4681 gtattgcttg cgggcattgc atgatggctt gtcccacagg tgccattgct gttgaaggaa
     4741 ggactttatc gccggttcaa ttatttgatt tgccggacaa aagcatggtt ccatcttacg
     4801 atagtctgtt agccatgctt cagcgtcgcc gcagtattcg cgagtttaaa gacataccgg
     4861 ttgaagcaga gaaaataaat caaattctgg aagctgccca aaccgcccct atgggaatac
     4921 cgccttcgga tgtgcatgtg ttggttttgg aaaataagaa acaggttagg atttttgccg
     4981 aggaattttc caactacctg aaaaatatcc gttggatgtc gtccaactgg tttcttacgc
     5041 taatgcgacc tttttgggga aaggcaaatg acgaaatgat gagcgaattc atcaaaccgg
     5101 tgtttaatat ttatgtcgac gacatggcca aaggcagtaa ctggataaac tacgatgcac
     5161 cgctcgccat gtatttctac ggatcgcctt ataccgaccc tgccgacccg attatagcag
     5221 ccacctacgc catgcttgcc ggcgaaagcc ttggactggg tacttgcatg cttggcgcca
     5281 ttcatccatt cattcaaaac ggcaaaaaag ccagaaagtt tcgcgaaaaa tggggtatca
     5341 aatacccgtc acgcgaaggc ttggttgtca tttttggcta tgcagacgtt cattacaata
     5401 aaggagtaaa acgaactttt gcagatatac acagggtcag ttgataatga aagtctgcaa
     5461 atcttttaat tcattgtcaa ctgtcaattg tcaactgtga attgaataaa ggtattcttg
     5521 ttcagtttgc ccgggggttg gaacccattc agccttttgg aggcaaccca gcgcatccaa
     5581 atccataata cttgaatagc ctgaacgaca gataattttc ctcgctccta gtaaaatctc
     5641 agccagtgcc gcatccggta aatgcggaac cagtgtaaca tttccaatat gtcgttgata
     5701 gctggaagat tggggctgcc cgcgaacaat gagcgttttt ttcgaccggt ttttatattc
     5761 taaaatcaga taatcttcaa aaatggttcg ctgtggctct aaacctgaaa ccactgccac
     5821 cacatcaaaa tccgtatttg gttgcac
//
LOCUS       DATDNM010000713         2067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2009310, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000713 DATDNM010000000
VERSION     DATDNM010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2009310"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1338
                     /locus_tag="VI413_12035"
     CDS             <1..1338
                     /locus_tag="VI413_12035"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6915397.1"
                     /translation="EEIIGRTSLEINMWHNLEDRKEFVRRMNENGFVQNFEAKLATKQ
                     GELKHTLVSAAIIDLENTPFILSTTRDITVRKKTEEALRESEERLRDIIFSTADWIWE
                     VDENGRYTYSSQRATELFDIVQEEIIGKTPFDLMPEEEAKKIASLFSEIANNKAPITD
                     LENWNIGKEGKRICLLTNGLPIIDHAGRLKGYRGVDKDITERKLAEQELINAKERAEE
                     SDRLKSAFLANMSHEIRTPLNSIIGFSDLLFDPFYSTAQQKEFVKSIRNSGDNLLVII
                     SDIMDLSKIESGQFQITKRPFSINDLIIDIQKVYSYKATEKEIELKLNLPTKDAIIIN
                     SDKAKVRQVLINLVTNAIKFTEYGSIEMGFKVIDHTIQIQVKDNGIGIHPEYHQIIFE
                     RFRQVENSETRRFGGNGLGLAISKNLVEMLGGKIWLESEVGKGSTFYFSLPIS"
     gene            complement(1459..>2067)
                     /locus_tag="VI413_12040"
     CDS             complement(1459..>2067)
                     /locus_tag="VI413_12040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915398.1"
                     /translation="KRIIFLLLMFLFLLPSVYLYGQEEFFSKQDGFSFAYLRGVNAPV
                     KADAFGFSYYSKKGFITGVGMERAGDVTAPMATLLFCPNWADNLSGFKALIGPSYSYV
                     SSHHVVGINVGMVKCFFAERNFPFSINGAFSFQSVLSSQPTLDSKQVPVMGYGYTQAF
                     FAHSNLYPFISISNSYNMNSGDQILSLSFGINVKLDAPSAEK"
BASE COUNT          743 a          365 c          412 g          547 t
ORIGIN      
        1 gaagaaatca ttggaagaac ttctttggaa ataaacatgt ggcacaatct tgaagacagg
       61 aaagaattcg ttcgccggat gaatgaaaat ggatttgtac aaaatttcga agcaaaacta
      121 gctacaaaac aaggtgaatt aaaacatacg ctggtttctg ctgctatcat tgaccttgaa
      181 aacactccat ttatattgag tactacaaga gacattacag tacgcaaaaa aacagaagaa
      241 gcgcttcgtg aaagtgagga acgactaaga gacattatct ttagtacagc tgattggata
      301 tgggaggttg acgaaaatgg ccgatatacc tatagttcac aaagagcaac tgaacttttt
      361 gacatcgttc aggaagaaat cataggaaaa acgccttttg atttaatgcc cgaagaggaa
      421 gcaaaaaaaa tagcttccct gttttcagaa attgcaaaca ataaagcgcc tattacggac
      481 ctcgaaaatt ggaatattgg caaggagggt aaaagaattt gtctgctaac caacggactt
      541 ccaattatag accatgctgg caggttaaaa ggatatcgtg gagtggataa agacattaca
      601 gaacgaaagc ttgcggaaca ggaactgatc aatgcaaaag aaagggctga agaaagtgat
      661 cgtttaaaat cagctttcct ggccaatatg agccacgaga tacgcacccc gctcaatagt
      721 atcattggat tttcggatct attatttgac ccgttttaca gcacagcgca acaaaaagaa
      781 ttcgtcaagt cgatcagaaa tagtggagac aacctgcttg ttattattag tgacatcatg
      841 gatttatcta aaattgaaag cgggcagttt cagatcacaa aacgcccgtt ttctatcaat
      901 gatttgatta ttgacattca aaaggtatac agttataaag caacagaaaa ggaaattgaa
      961 ttgaagctga atcttccgac taaggatgcc attattatta atagcgataa ggccaaagtc
     1021 aggcaggttc ttattaatct ggtaaccaat gccatcaaat ttacagaata tggatcaatt
     1081 gaaatggggt tcaaggtaat tgaccacacg atacaaatac aagtgaaaga taacggtatc
     1141 gggattcatc ccgagtatca tcagatcata tttgaacgtt ttcgtcaggt agaaaattca
     1201 gaaacccgaa gatttggtgg aaatggatta ggattagcca tttcaaagaa tctggtggaa
     1261 atgcttgggg ggaaaatatg gcttgaaagt gaagttggaa aaggaagtac cttctatttt
     1321 agtctgccca tatcgtaatg ttcatcatta tttaaaaagt aaagagcagg aacgcacatg
     1381 ccttacaaat gtgtttctgc tctttctttt gaattacaac atgctattat tactttaact
     1441 taagcttgaa tattgaagtt atttttcagc agacggggca tcaagtttca cattgatccc
     1501 aaaggacagg gaaaggattt gatctcccga attcatgtta taggaatttg aaatgctgat
     1561 aaaaggataa aggttagaat gggcaaaaaa cgcctgggta tagccatatc ccatgacagg
     1621 aacttgcttg gaatccaggg tgggttggct gcttaataca ctttgaaatg aaaaagcgcc
     1681 atttatggaa aaagggaaat tcctttcagc aaagaaacat ttcaccattc ccacattaat
     1741 tccaacaaca tgatgactac ttacgtaact atatgacggg ccaattaaag ccttaaaacc
     1801 acttaaatta tctgcccaat taggacaaaa taataatgta gccatagggg ctgtaacatc
     1861 gccagccctt tccattccta ctccggtaat aaaacctttt ttactatagt agctaaatcc
     1921 aaaagcatcg gccttaacgg gagcattaac acctctaaga taagcaaacg aaaaaccgtc
     1981 ttgtttacta aaaaattctt cctgcccata gaggtaaacg cttggcaaca gaaatagaaa
     2041 catcagcaat aaaaaaataa ttctttt
//
LOCUS       DATDNM010000714         2110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_725677, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000714 DATDNM010000000
VERSION     DATDNM010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_725677"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..794
                     /locus_tag="VI413_12045"
     CDS             <1..794
                     /locus_tag="VI413_12045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005929061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SecY family transport protein"
                     /protein_id="HEY6915399.1"
                     /translation="ISFIILVGIIARFPGAIIKEFASRLGDAGGGLVMFLGEIIFLLI
                     VIAASIMLVQGTRKIPVQYAKRVVGNKQYGGVRQYIPLKINAAGVMPIIFAQAIMFIP
                     MTLVGFSHSESMRGFVGAFMDNNGFWYNLVFGLLIVVFTYFYTAITINPTQMAEEMKR
                     NNGFIPGIKPGKRTAEYLDLIMSRITLPGSIFLAIVAIMPAFAKIIGINQGFAAFFGG
                     TSLLILVGVVLDTLQQIESHLLMRHYDGLLKSGRIKGRSGGASAY"
     gene            807..1592
                     /gene="map"
                     /locus_tag="VI413_12050"
     CDS             807..1592
                     /gene="map"
                     /locus_tag="VI413_12050"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005844893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEY6915400.1"
                     /translation="MIFLKSDEEIELLRISNQIVAKTLAELAKLIQPGVSTEYLDKIA
                     EEFIRDNGAVPGFLGYSGYPKSICTSVNEQVVHGIPSEKLVLQDGDIVSVDCGVYKNG
                     FHGDSAYTFCVGDVKPEIVDLLRTTKESLYKGIEQAQEGKRLGDVGHAIQSHCEARGY
                     SVVREMIGHGVGRNLHEAPEVPNYGRKGNGIMLKSGMTIAIEPMINLGSRNLVFEKDG
                     WTTRTIDRKPSAHFEHSIAIRRGKADILSTFEYIEQVLGNKAI"
     gene            1596..1814
                     /gene="infA"
                     /locus_tag="VI413_12055"
     CDS             1596..1814
                     /gene="infA"
                     /locus_tag="VI413_12055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017185218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEY6915401.1"
                     /translation="MAKQTAIEQDGKIIEALSNAMFRVELENGHVITAHISGKMRMHY
                     IKILPGDKVKVEMSPYDLSKGRISFRYK"
     gene            1833..1949
                     /gene="ykgO"
                     /locus_tag="VI413_12060"
     CDS             1833..1949
                     /gene="ykgO"
                     /locus_tag="VI413_12060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014790280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HEY6915402.1"
                     /translation="MKVRASVKKRTDDCKIVRRKGRLYVINKKNPKFKQRQG"
     gene            1978..>2110
                     /gene="rpsM"
                     /locus_tag="VI413_12065"
     CDS             1978..>2110
                     /gene="rpsM"
                     /locus_tag="VI413_12065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009125149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEY6915403.1"
                     /translation="MAIRIVGVDLPQNKRGEVGLTYIYGIGRSSAKKILESAGVDIDI
                     "
BASE COUNT          670 a          333 c          460 g          647 t
ORIGIN      
        1 gtatttcatt cattattttg gttggtatta ttgctcgttt cccgggagct attatcaaag
       61 aatttgcttc tcgtttagga gatgcaggtg gaggtttggt gatgttcctt ggagaaatta
      121 tctttttatt gattgttatt gctgcttcta ttatgttagt gcagggaacc cgcaagattc
      181 cggtacaata tgctaaaaga gtagttggta acaaacaata cggtggagtt cgtcaataca
      241 tacctttaaa aataaatgct gcaggtgtaa tgccaatcat ttttgcgcag gcaattatgt
      301 ttatccctat gactttggtt ggattctcac attctgaatc tatgagaggt tttgtaggag
      361 catttatgga caataatgga ttctggtata atcttgtatt tgggctcctg attgttgtat
      421 ttacatattt ctatacagct atcacgatta acccaactca aatggcagaa gaaatgaaac
      481 gtaataatgg ttttatccca ggaattaaac caggaaaacg tacggctgaa tacttagact
      541 taattatgtc tcgtattact ttgccgggat ctatcttctt agcaattgtt gcgataatgc
      601 ctgcatttgc aaaaattatc ggaattaatc agggctttgc ggcattcttt ggtggaactt
      661 cgttgttgat tttagttggt gttgttcttg acaccctaca acaaatcgaa agtcacttgt
      721 taatgcgtca ctatgatggc ttgttgaaat ctggacgtat taaaggacgt tcgggtggag
      781 cttctgccta ctaaaaatta gatcgaatga tatttttgaa atctgacgaa gaaattgaac
      841 tgcttcgtat cagtaatcaa atagtcgcta aaacgttagc agaacttgca aagctgattc
      901 aaccgggcgt aagcacggag tatttagata aaattgctga agaatttatt agggataatg
      961 gcgctgtacc tggttttctg ggttacagcg gctaccccaa atcaatttgc acttcggtaa
     1021 atgagcaagt tgtacacgga ataccgtctg aaaaattagt tttacaggat ggtgatattg
     1081 tgtcggtaga ttgtggagta tacaaaaatg gttttcacgg agactcagct tacacttttt
     1141 gtgtaggcga tgtaaaacca gaaatcgttg atttgttacg cacaaccaaa gaatctttat
     1201 acaaaggtat agagcaagcc caggaaggaa agcgcttagg tgatgttggc catgccattc
     1261 aaagccattg cgaagcccgc ggatattcag tagttcgtga aatgatagga catggagtag
     1321 gacgcaattt gcatgaagcg cctgaagttc ctaattatgg tcgcaaagga aatggtatca
     1381 tgctcaaatc gggaatgacc attgccattg aaccaatgat taatttgggt agccgtaatc
     1441 tggtgtttga aaaagatgga tggaccaccc ggacaattga ccggaaaccg tcggctcact
     1501 tcgaacattc gatagcaata cgacgtggaa aagctgatat tttatcaact tttgaatata
     1561 tagaacaagt tttaggcaac aaagcaatat aatttatggc caagcaaaca gcaattgaac
     1621 aagatggtaa gataatcgaa gctttatcta atgccatgtt tcgtgtagag ttagaaaacg
     1681 gtcacgttat tacggctcat atttcgggta aaatgcgtat gcattatatc aaaattttac
     1741 ccggcgataa agtaaaagtc gaaatgtcgc cttacgattt gtcgaaagga agaatctctt
     1801 ttagatataa ataaaaatta aatattttca atatgaaagt aagagcatct gtaaaaaagc
     1861 gtacagacga ttgtaaaatc gttcgtagaa aaggtcgctt gtatgttatc aacaaaaaaa
     1921 atcctaagtt taaacaacgt caagggtaat taatttattt tagaaaaaga atagtttatg
     1981 gctataagaa ttgtcggagt agatttaccc caaaacaaaa gaggggaagt tggattgact
     2041 tatatctacg gaataggtcg cagtagtgca aaaaagattt tagaatcagc cggtgttgat
     2101 attgacatca
//
LOCUS       DATDNM010000715         2348 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1581187, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000715 DATDNM010000000
VERSION     DATDNM010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1581187"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(641..>2348)
                     /locus_tag="VI413_12070"
     CDS             complement(641..>2348)
                     /locus_tag="VI413_12070"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915404.1"
                     /translation="VASGSASEKGEVAWGDFNNDGYLDLFQLSDNVYKLYQNNGNETF
                     SDVSSSKLPGTLPGGVNESSVIFLDYNNDNNLDILITGWPLSNATLYKNSGAPDYTYT
                     IDTQNSLLSVRTGNGGNAHAILSAVDYNNDGWVDLFMEGWSDAANNRVVTLYKNVNGL
                     FTRQTTPVGGTADFEGMNGGSLHTGDINHDGYVDMISSGYSVTGSYRTYLYINQGDGT
                     FAKSTAAFTGVEQGESVLFDSNNDGWLDVFIAGVGYEGGWVWPGSLYLNNQDGTFTLM
                     ASGTNLPSGTQGYAGFATGDANNDGKTDLMVMLPNGENTAMYYNNGDNTFLKDILPTP
                     ARARAGSMDLADFNNDNKLDYFLFGYNDNVGWLGAFVKNTTAVANLAPSIPANLLATK
                     VNGKYVISWDKSTDDITTQNAISYNIYVQDQSGKVYAYSPADIATGRLKTGSQTLLNK
                     NQITLDLAAGQYTVGVQAVDQANVASAFITTSLSITTGVENTLASKVDVKSINKNIEI
                     QNSGLQKVNVTLLSLSGQLLYKGFCEAGSKTVLPMSLNQGIYLVKLSQDNTTHTVKVS
                     VL"
BASE COUNT          743 a          497 c          386 g          722 t
ORIGIN      
        1 atccgatagc actacaaaaa ccattaagat tatcaattag cctcgcttcg gattgaataa
       61 ttttcaacca gtaattcctc tcgttttcaa agagtgatta ctggttgatt gtttctatca
      121 atactaataa taattgaaat atagatccct gttaagctga ttcggataca ctcaaacaca
      181 agatttcata gggggtattt aagcctcgta tcggactctc agatagaaaa agcataaact
      241 aactttcttc taagtactat tgaataatcg tagccacact tcatcgctca gtgaagtacc
      301 tcttcaatgg taagcgaaga ctcacaacaa cgctctatca aaaaaagcct tagtggcagg
      361 agacatatac cggtatgctg aaagaaaatg tgacgaaaaa aagttgtgta aaaaaaaaga
      421 atgcctgact cattgctgag tgcaaacatt ctttccaacc ttaaaaacta ataacgggat
      481 agtgaactat tttaaacaac caataattta ttcaatttta taagcatcaa ctctgatttt
      541 atccaatgca aaaaaatccg agttgatgca agttattgct tttctatcaa gccaaaatat
      601 aaagaaaggg aaaagagaac ctttcccttt cagttatgaa ttataatact gacactttta
      661 ctgtatgagt agtattgtcc tgtgacagtt tcactaaata aataccctga ttcaagctca
      721 ttggtaatac tgtttttgaa cctgcttcgc agaacccttt gtacaataac tgtccgctaa
      781 gtgaaagcaa cgtaacattc actttttgca atccgctatt ttggatttca atgtttttat
      841 tgatagattt cacatctact ttcgaagcca atgtgttttc aacaccagta gtaattgaca
      901 agctggtagt gataaaagca ctggcaacat ttgcctggtc tacagcttga actccaacgg
      961 tatattgacc agcagccaaa tcaagtgtga tttgattttt attcaataat gtctgtgaac
     1021 ctgttttcaa acgtccggtt gcaatatcag ctggtgagta tgcgtacact ttacctgact
     1081 gatcctgaac ataaatattg taagagatag cattctgtgt agtaatatca tctgtcgatt
     1141 tatcccagct gattacatat ttgccattca ctttagtggc aagaagattt gcaggaatac
     1201 ttggagcaag atttgcaact gcagtcgtat ttttcacaaa agcacctaac caacccacat
     1261 tatcattgta accaaaaagg aaataatcca atttattgtc gttattgaaa tcggctaagt
     1321 ccattgatcc tgctcttgca cgggcaggtg ttggaagtat atctttaagg aaagtattat
     1381 ccccgttatt ataatacatg gctgtatttt cgccgttagg gagcataacc attaaatcgg
     1441 tttttccatc gttatttgca tcacctgtcg caaaaccagc atatccctgt gtaccgcttg
     1501 gcaaattagt cccacttgcc attaatgtaa atgttccgtc ctgattgttc agatataagc
     1561 tacccggcca tacccaacca ccttcgtagc caacaccggc aataaataca tctaaccaac
     1621 catcgttgtt tgaatcaaat aaaacagatt ctccctgttc aactccggta aatgcagctg
     1681 ttgatttcgc aaaagtgccg tcgccctgat tgatatacaa ataggttctg tatgaaccgg
     1741 taactgaata acctgaacta atcatatcaa cataaccatc gtgattgata tcgcctgtat
     1801 gcaacgaccc accattcatt ccttcgaaat ctgctgttcc gcccactggt gttgtttgtc
     1861 ttgtaaacaa accatttaca tttttatata aagtaacaac gcggttattt gctgcatcgc
     1921 tccaaccttc cataaacaaa tcgacccaac catcattgtt ataatcgact gctgataaaa
     1981 ttgcatgcgc atttccacca tttcctgtac gtacgcttaa caaactattc tgggtatcaa
     2041 tagtgtatgt gtaatccggt gcacctgaat tcttgtacaa tgtggcatta gaaagcggcc
     2101 aacctgtgat aagaatatcc aggttattat cattattata atccaggaaa ataacagatg
     2161 attcatttac gccaccaggc aatgttccgg gcaatttact gctgcttaca tctgaaaaag
     2221 tttcatttcc attattctga tacaatttgt aaacattgtc tgaaagctga aacaaatcca
     2281 ggtaaccatc gttattaaag tcaccccagg caacttctcc tttttcggag gctgaaccac
     2341 tagctaca
//
LOCUS       DATDNM010000716         4569 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_407055, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000716 DATDNM010000000
VERSION     DATDNM010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4569
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407055"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..2122)
                     /locus_tag="VI413_12075"
     CDS             complement(59..2122)
                     /locus_tag="VI413_12075"
                     /inference="COORDINATES: protein motif:HMM:NF039970.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4859 domain-containing protein"
                     /protein_id="HEY6915405.1"
                     /translation="MHSIKFFKILFILTLLFLGSTVYAEKQIYLTSSFSGMDMNSESS
                     QYCWARSRQTENFIIFWEAGYGADPSTLTNTSYKVNVDNVLSVAEKAFTLYADSLKFI
                     TRGKSKTDLYKMIIRLRYTTDWEASGSGQDNMIGLLTLTASSAQAAGVTMAHEVGHCF
                     QYQVHCDNNNDNGWMYGFGSSASGGNCWWEQCAQWQAFKVYPAEQFTNYRFSEYLNNA
                     HRNILHESPRYANYFIQDYWCYLHGMDFIGRLWNTSVKPEDPVETYKRITGITQAKFN
                     DQMYDCAARFVTWDVPALRSSGESVIAARPLPKMTLTEDNYWLIDSVNCVENYGYNAI
                     LLNTPSTATTVKAYFEGRRGQAGYRNLSAAAGWRYGFVCLQNNGNRLYSPMRAVAATN
                     NKDTLSFDCPANCMKLWLVVSGAPAYHWRHPWDDDVSNDEQWPYRVKFENTNRYGIYT
                     FDQNSVPYNDTLTYNINQTPFTGSVSSTYPSIAVAVDMSRVCQAFCMQLSEIQANFGS
                     KIIYNAVISNGSLNSTSTATAPGHWFTNLGNVTTWGNNSYLFSELRTNNFAFNIGQYP
                     GKCKKGDKFTIRQAFVYKKSATETYKVVFVFNVVIGDVSGIGYATGLNDPVSLNNNNP
                     VKSTLVKDVLQMNGVYPEIIVRNISGQIIKYAFNSDNVSLSGIPVGIYLVTANGRTVK
                     IIKGM"
     gene            complement(2161..4233)
                     /locus_tag="VI413_12080"
     CDS             complement(2161..4233)
                     /locus_tag="VI413_12080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009130571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2264 domain-containing protein"
                     /protein_id="HEY6915406.1"
                     /translation="MIVSKNTTLSRLRLVLIICMVFFFQLIIIANDAKKYTVESNNTF
                     RVNNPDYMLSPYSGMTRQHWKDAALYMLKGAFGYIHNLDDPMKFPKQPGVSYPRSNDQ
                     IPTEKLEGLSRTLFVAAPLLKENPDLVVNNINVADYYRHQICNLFNPASPSYIKHRSK
                     NGGPSQNLVEFGALAISMSAIPEVLWNPLSPSQKDSLAALMISYGDGPTVDSNWKFFN
                     IFVLSFFKDKGYPVNEKLLAEYLQKSLNAYKGEGWYNDSPAYDYYSMWAFQMYGVLWA
                     EFYGNKYYPEFASKFMKNFSDLSDNYPFLFSKAGKMIMWGRSISYRYAAVTAFPLMGF
                     ENDPNINYGWMRRIASGTLLQFFQHPDFMKDGVPTLGFYGPFEPAVQMYSCRGSVYWG
                     GKVFLGLLVPENNPFWTAIENEGPWEKELAKDSVYNKFSTGSNILITDYPNIGASEIR
                     AWCHATVAGDWQKFRSTENYNRLSYNSAFPWQADGKRGEVAMNYVVKNDSGKWEPLRL
                     YTFKKFENGVYYRDAVLETNGKIQFKLADIPLPNGILRVDKLVCKDSMLKSIDVRLGH
                     YALPQQGKAIHDETLNIGSDRIKSIDNGEYKLAMIPWKQWGAMQFVHATGLHPQSNAS
                     AVINAFDTFETGKKNEKIYITIELWKKLGTEWTNKELTPVRRIKISKDGTAVEITFRD
                     KTRKTVQF"
BASE COUNT         1356 a         1007 c          816 g         1390 t
ORIGIN      
        1 aaaagttttg tcgtttgaac tgttcgatta gaataaaacc tcatagtatc ccgactaatc
       61 acatgccctt aatgattttg accgtacgac cattagctgt aaccaaataa atacctaccg
      121 gaattccact caaactgaca ttatcagagt taaatgcata tttaattatt tgtccgctta
      181 tgttacgaac tataatttcc ggataaacac cattcatttg caaaacatct tttaccagcg
      241 tggattttac cggattatta ttatttaggc taacaggatc gttcaaacct gtggcatagc
      301 caattccgga aacatctcct atgacgacat tgaacacaaa tacaactttg taggtttcag
      361 ttgcactttt cttataaacg aaggcctggc gaatggtgaa tttatctcct tttttacatt
      421 ttcccggata ctgacctata ttaaatgcaa aattatttgt ccttaattct gaaaacagat
      481 acgaattatt accccatgta gtcacgttcc ccagattcgt gaaccagtgt cccggagccg
      541 tagctgtaga agttgaattc aggcttccat tactaataac ggcattataa ataattttcg
      601 aaccaaaatt ggcttgtatt tcggacaact gcatgcaaaa agcctgacat acccgactca
      661 tatcaactgc tacagctata cttggataag tggaactaac actgccggta aatggagttt
      721 gatttatatt ataggtcaac gtgtcattat aaggcacact attttgatca aatgtataaa
      781 tcccgtaacg gttcgtgttt tcaaacttca cccgatatgg ccattgctca tcgtttgaaa
      841 catcatcgtc ccatgggtgc cgccagtgat aagcaggtgc accacttacc accaaccaaa
      901 gtttcataca attggcagga cagtcaaacg aaagggtatc tttgttatta gttgctgcca
      961 ctgcccgcat tgggctataa agcctgttgc cattattttg aagacaaaca aaaccgtaac
     1021 gccatcccgc agcagccgaa aggttgcggt atcctgcctg acctctgcgc ccttcaaaat
     1081 atgcctttac tgttgttgcc gtcgaaggcg tattcagtaa tatggcatta tacccataat
     1141 tttcaacgca atttacggaa tctatcaacc aataattgtc ttcggtcaaa gtcatttttg
     1201 gcaaaggccg ggcggcaata acactttcgc cggaagaacg taaagcgggc acatcccatg
     1261 taacaaaacg tgctgcacag tcatacatct gatcattaaa ctttgcctgg gtgattccgg
     1321 ttattcgttt gtaagtttca accggatctt caggttttac cgatgtattc cataaacgtc
     1381 cgataaaatc catgccatgc agataacacc aataatcctg aataaaatag tttgcatagc
     1441 gcggcgattc atgcaatata ttacggtgcg cattattcag atattcggag aaacgataat
     1501 tcgtaaattg ctctgccgga tacactttaa aagcctgcca ttgtgcacat tgttcccacc
     1561 agcaatttcc tccgcttgca cttgaaccaa atccgtacat ccaaccatta tcgttattat
     1621 tgtcgcaatg cacctgatat tgaaaacagt gaccaacttc atgtgccata gtaacaccgg
     1681 cagcctgcgc cgatgatgca gtaagggtca aaagtcctat catattatct tgcccggaac
     1741 cactcgcttc ccaatcggta gtataacgaa gtcggataat cattttgtac aaatcagttt
     1801 ttgactttcc gcgtgtaata aatttcaaag aatcggcata cagtgtaaaa gctttttcgg
     1861 ccacactcaa cacattatct acattaacct tatatgaagt attggttaat gtagatggat
     1921 cggctccata acccgcttcc caaaaaatta taaaattctc tgtttgccgg cttcgtgccc
     1981 agcaatactg gctactttca ctgttcatat ccataccgct gaacgaagat gtcaggtaaa
     2041 tctgtttttc ggcataaaca gttgagccta aaaacaacaa tgtcaggatg aacagtatct
     2101 tgaaaaattt aattgaatgc atgcctttgg agttttaatt tatcagtcaa tgagtatatg
     2161 ttaaaattga actgtttttc tagtcttatc acggaatgtt atttccacag ccgtaccatc
     2221 tttcgaaatt ttaattcgtc ttactggtgt aagttcttta ttagtccatt cagtacccaa
     2281 ttttttccag agttcaatgg tgatataaat tttctcgttt ttctttcctg tttcaaacgt
     2341 atcgaaagca ttaatcaccg cacttgcatt gctttgcggg tgtagtccgg tagcgtgaac
     2401 aaactgcata gcgccccatt gtttccaggg tatcatggcc agtttgtatt cgccattatc
     2461 aatcgatttt atgcggtcgc ttccaatgtt taatgtttcg tcatgaatag ctttaccctg
     2521 ttgcggtaag gcataatgtc ccaaacgtac gtcaatagat tttagcattg aatctttaca
     2581 aactaactta tcaacacgca aaataccgtt tggcaaagga atatccgcca gtttaaactg
     2641 aattttgccg tttgtttcga gtaccgcatc acgataataa acaccatttt caaatttttt
     2701 aaaggtatat aaccgcaaag gttcccattt gcccgaatca tttttaacca cataattcat
     2761 ggccacttcc cctcgtttgc catcagcttg ccacggaaaa gccgagttgt acgacaaacg
     2821 gttgtagttt tcggtactgc ggaatttttg ccagtcgccg gccactgtag cgtggcacca
     2881 tgcccgtatt tccgatgcac cgatattggg ataatcagta atcaggatat tggaacctgt
     2941 tgaaaattta ttgtaaaccg agtctttggc aagttctttt tcccagggac cttcattttc
     3001 aatggcagtc cagaaaggat tattttcagg cacaagtaac ccgaggaaaa cctttccgcc
     3061 ccaatatacg cttccacggc aactatacat ttgtacagcc ggttcaaaag gaccgtaaaa
     3121 accgagcgtt ggtacgccgt ctttcataaa atcgggatgt tggaaaaatt gcaaaagagt
     3181 accggaagct atccgacgca tccaaccgta atttatgttc gggtcatttt cgaatcccat
     3241 cagaggaaaa gctgtaactg ccgcatagcg atacgaaata ctgcgtcccc acataatcat
     3301 ttttccagcc ttgctaaaaa gaaatggata attatcagac aagtcactga agtttttcat
     3361 aaacttgctc gcgaattccg ggtaatactt atttccgtaa aattcagccc aaagcacgcc
     3421 atacatctga aatgcccaca tgctgtaata gtcgtaagcc ggactgtcgt tataccagcc
     3481 ttcgcccttg taagcgttaa gcgacttttg cagatattcg gctaataact tttcgttgac
     3541 cggataacct ttgtctttga aaaaactgag aacaaatata ttaaagaatt tccagtttga
     3601 atccacagta ggcccatcac catagctaat cattaatgct gccaacgagt ctttttgcga
     3661 cgggctaagt gggttccaaa gcacttcggg aatggcgctc attgaaatag ccagtgctcc
     3721 aaactccacc aaattctgac ttggtccacc gtttttagaa cggtgtttga tatatgatgg
     3781 actcgcagga ttaaacaaat tgcatatctg atggcgataa taatcagcca cgttgatatt
     3841 attgacaacc aaatccggat tttccttcaa cagcggtgct gccacaaata acgttcggga
     3901 tagaccttcc agtttttctg tcggaatctg atcgttacta cgcggataac ttacacccgg
     3961 ttgtttcgga aatttcatcg ggtcatccag gttatgaata tatccaaatg cccctttcaa
     4021 catgtacagc gcagcgtctt tccaatgctg gcgggtcatt ccggaataag gacttaacat
     4081 ataatccgga ttgtttacac gaaaagtgtt attactttca actgtatatt tttttgcatc
     4141 attagcaatt ataatcaact gaaaaaaaaa caccatgcat ataatcagca caagcctgag
     4201 tcttgataga gttgtgtttt tactaacaat cataatattt tatttaaatg taacaatcaa
     4261 taattatagt ggagcattaa ttcactccgc gttgaatatt gaataataag tataaaactc
     4321 cgcaaccttc aattaaaaaa gtggcggagt tctataatat tcaattttgg ttattgtata
     4381 acctgtttta aattcagcta ttaaaacagt tctatttttt caaataccaa ttagttctat
     4441 ccataagttt ggatctaata gctccctgat tatccttatg cttagcagct actttatcag
     4501 ccaggtaagc attatcatca cgacggatag caaatcgcat caaatcatgg aaacgattac
     4561 cttcgaaag
//
LOCUS       DATDNM010000717         2930 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_513666, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000717 DATDNM010000000
VERSION     DATDNM010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513666"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..522
                     /gene="pth"
                     /locus_tag="VI413_12085"
     CDS             <1..522
                     /gene="pth"
                     /locus_tag="VI413_12085"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005841628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEY6915407.1"
                     /translation="YQDTRHNIGFTILDAFAKASNVFFTENRYGSTCEVKLKGRTLIL
                     LKPSTFMNLSGNALRYWMQKEKIAIENVLVIVDDLALPFGTLRLKPQGSDAGHNGLKN
                     IQEILGNNNYPRLRFGIGSDFSKGRQVEYVLGKWTAEQAAAIPERAERCAEIIQSFCL
                     AGMQLTMTQFNGK"
     gene            522..941
                     /locus_tag="VI413_12090"
     CDS             522..941
                     /locus_tag="VI413_12090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEY6915408.1"
                     /translation="MKTEVRIDKWLWAVRLFKTRSLAAEACKKGKIIIQGVQVKPSRN
                     VKVGDVVCVKRNPILFSFKVLALSENRMNAKLVPGFIENVTTPDQLELIELGKLAGQT
                     GRDRGTGRPTKKERRELDDFIEPVFMDEDGDWDFEEH"
     gene            1028..1576
                     /locus_tag="VI413_12095"
     CDS             1028..1576
                     /locus_tag="VI413_12095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007664433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4924 family protein"
                     /protein_id="HEY6915409.1"
                     /translation="MFIAHKLKKENICEYLLYMWQIEDLIRAFGLNIDAINERIITPF
                     PVKEDSERKSLYEWYESLIEMMRIEGVQGSGHLQLNKNVILELDEFHALLMKSGKVPS
                     YNAKFLYVLPFINQLRQKGEAGLSDIELCFNFQYGIMMLRMRKAEITPQTQQIQTEIS
                     KYMVLLSKNYQLYKSGELDIEE"
     gene            1671..2543
                     /gene="rfbA"
                     /locus_tag="VI413_12100"
     CDS             1671..2543
                     /gene="rfbA"
                     /locus_tag="VI413_12100"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004350591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEY6915410.1"
                     /translation="MKGIVLAGGSGTRLYPITKSISKQIIPVYDKPMIYYPLSVLMLA
                     GIKEILIISTPQDIHLYENLLGNGDDLGVKLEYAIQPSPDGLAQAFIIGEEFIGDDSV
                     CMVLGDNIFYGFDFSRTLREAAQLEDGATVFGYYVNDPERYGVAEFDANGKVLSLEEK
                     PLQPKSNYAVTGLYFYSNDVVKKSKGLKPSKRGELEITDLNRLYLEEGRLSLKMMGRG
                     MAWLDTGTHDSLLEASNFIATIENRQGLKIACLEEIAFRNGYISREQLLKLAEPLKKN
                     HYGEYLIKIANEAI"
     gene            2611..>2930
                     /locus_tag="VI413_12105"
     CDS             2611..>2930
                     /locus_tag="VI413_12105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008673033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEY6915411.1"
                     /translation="MKIIETPIKDLIIIKPRVFADARGFFCETYNEKKYREAGIYLRF
                     CQDNQSKSSYGVIRGLHYQLNPQSQSKLVSVVQGAVWDVAVDLRKDSPTFGQWYGIEL
                     TEEN"
BASE COUNT          878 a          512 c          697 g          843 t
ORIGIN      
        1 taccaggata cccgccacaa cataggtttt acaatattgg acgcttttgc taaggcgtcc
       61 aatgtttttt ttacagaaaa ccgttacggc tccacttgtg aagtgaagtt aaagggtcgt
      121 accctgattt tgctcaagcc atctacgttt atgaacctaa gcggaaacgc tttgcgttat
      181 tggatgcaaa aggaaaaaat cgccattgaa aacgtattgg tcattgtgga tgatcttgct
      241 ttgcctttcg gaacgcttcg tttgaaacca caaggctcgg atgcaggaca taatggcttg
      301 aaaaatattc aggaaattct ggggaataat aattatcccc gtttgcgatt tgggattggg
      361 agcgatttct ccaaagggcg tcaggtggag tatgtgttgg gtaaatggac agctgaacag
      421 gctgctgcta ttcctgaacg ggctgaacgt tgtgcggaaa ttatccaaag cttctgcctg
      481 gccggcatgc aattgaccat gacacagttt aatgggaaat aatgaaaaca gaagttcgta
      541 tcgataaatg gttgtgggct gtacgcttgt tcaaaacccg ctcgctggct gccgaagctt
      601 gtaagaaagg taaaattata atccagggcg tacaagttaa accatcgcga aatgtgaaag
      661 ttggcgatgt agtttgcgtg aaacgaaatc cgattttgtt ttcgttcaaa gtactggcgc
      721 tttctgaaaa ccgaatgaat gcaaagttgg ttccgggttt tattgaaaac gtaactacgc
      781 cggatcaact ggagctgatt gaacttggca agctggcagg acaaaccggt cgtgatcgtg
      841 gaacgggaag gcctaccaaa aaggaacgcc gtgaactcga tgactttatc gagcccgtat
      901 ttatggatga agatggtgac tgggactttg aggagcatta aattactcgt tttttagatg
      961 gtatttttat cgaatcaggg ttcttcaatc ggaaattgta aatgtataaa ttgtaaatct
     1021 caaaatcatg tttatagcgc acaaacttaa aaaagaaaat atctgcgaat atctgcttta
     1081 tatgtggcag attgaagatt tgattcgtgc tttcggtctg aatattgacg ctataaatga
     1141 acggattatc actccattcc cagtgaaaga ggatagtgaa cgaaaatcgc tttacgaatg
     1201 gtacgaaagc ctgattgaaa tgatgaggat cgaaggcgtg cagggatcgg gacatttgca
     1261 actgaacaaa aatgtgattc tcgaactcga tgagtttcac gcgctgctga tgaagtcagg
     1321 caaagttcct tcctataatg caaaatttct ttatgtttta ccgtttataa atcagttgcg
     1381 ccaaaaaggt gaagccggct tgagtgatat tgagctgtgc tttaattttc aatatggcat
     1441 catgatgctg aggatgagaa aggctgaaat aactcctcaa acccaacaga tacagaccga
     1501 aataagcaaa tatatggtgc tattatctaa aaactaccaa ctttacaaat ccggagaatt
     1561 ggatattgaa gaataaaagt aaattgatcg agcgattatt tgctaaatta tggttatttt
     1621 tgggggcgaa attttacaac tgaatagaaa aacttaaaat atctaattat atgaaaggca
     1681 ttgttttggc cggaggttcc ggaacccgtt tgtatccgat taccaagagt atttccaaac
     1741 aaatcattcc ggtttacgac aaaccgatga tttattatcc gttgtcggtt ttgatgctgg
     1801 ccggaattaa ggaaattctg attatttcca ctcctcagga tattcatttg tatgaaaatt
     1861 tgcttggaaa cggtgatgat ttgggtgtta aactggaata tgccattcag ccttctccgg
     1921 atgggttggc acaggcattt attatcggcg aagagtttat cggtgatgat agcgtatgta
     1981 tggtgttggg tgacaatatt ttctatggtt tcgatttttc gcgtactttg cgtgaggctg
     2041 ctcagctgga agatggtgct acagtgtttg gatattatgt gaatgatcct gaacgttatg
     2101 gagtggctga atttgatgca aacggtaaag tgttgagcct ggaagaaaaa cctttgcagc
     2161 caaaatcaaa ctatgctgta acaggattgt atttttacag caatgatgtg gtaaaaaagt
     2221 cgaaaggcct gaaaccatcg aagcgtggtg aattggagat taccgacctc aaccgcttgt
     2281 atttggaaga aggacgtctg agcctgaaaa tgatgggacg cggtatggcc tggttggata
     2341 ccggaacgca cgacagcttg ctcgaagctt cgaactttat tgccactatc gagaaccgtc
     2401 agggcctgaa aattgcctgt ctggaagaga ttgctttccg caatggttat atttcgcgcg
     2461 agcaattgct taaactggca gagcctctca aaaagaatca ttacggcgaa tatctgatta
     2521 aaattgccaa tgaagccatt taatcgcttc ccgttttaat aaataatttt tccaaaattc
     2581 taaactttgg aaaagtttca atgaaagaat atgaaaatta tagaaacgcc cataaaagat
     2641 cttattatta taaaacctcg tgtatttgct gatgcacggg gctttttctg tgaaacgtac
     2701 aacgaaaaaa aatacaggga agccggaatt tacctgagat tttgtcagga caatcagtct
     2761 aaatcgtcgt atggtgtgat tcgcgggttg cattaccagc taaatccgca aagccagtcc
     2821 aaactggttt cggtggttca gggagccgtg tgggatgtgg ccgtggattt gcgcaaagat
     2881 tcaccaacgt ttggacaatg gtatggcatt gagcttactg aagaaaacca
//
LOCUS       DATDNM010000718         3623 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_85761, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000718 DATDNM010000000
VERSION     DATDNM010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3623
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85761"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            46..1383
                     /locus_tag="VI413_12110"
     CDS             46..1383
                     /locus_tag="VI413_12110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010993399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HEY6915412.1"
                     /translation="MKTEQVLDNLKWRFPNEPEYYQAVEEVLLSIEDIYNAHPEFEKH
                     NIIERICIPDRIFSFRVTWVDDQGNVKTNMAYRVQHNNAIGPYKGGIRFHESVCPSIL
                     KFLAFEQTFKNALTTLPMGGAKGGSDFSPQGRSDGEVMRFCQAYILELWRHIGPQTDV
                     PAGDIGVGGREVAYMYGMYRKLARENTGAFTGKGLEFGGSLIRPEATGYGNIYFLMNM
                     LKRKGITDLKGQVVAISGAGNVATYTAEKVIELGGKVITMSDSNGYIYEPDGIDTEKL
                     AYIFDLKNVRRGRIKEYAAKYGCKYVEGQRPWSEKCTIALPSATQNEITGEDAEMLVK
                     NGCMAVSEGANMPSTSEAIDVFLKNKILFAPGKAANAGGVSVSGLEMSQNAMKLSWQK
                     EEVDGRLQQIMQSIHESCVKYGTEPDGFVNYVKGANIAGFMKVAKAMMAQGVI"
     gene            complement(2015..2896)
                     /locus_tag="VI413_12115"
     CDS             complement(2015..2896)
                     /locus_tag="VI413_12115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6915413.1"
                     /translation="MFQSHIGEFAGLGVSVCWTMSALFFEKAGHKIGSLSVNFIRLLF
                     AIGFLGITTFFSRGLFFPTDATGYQWFWLGLSGFIGFFLGDMLLFQSYMVIGSRTAAL
                     IMSLAPMLTAVIGWFFLDEILSPRNIIAIFISVSGIILAISNRRMKLNIPFKGFLLAF
                     GGAMGQAVGLILSKKGMGDYDPVAATQIRALFGLVSFGILITAIGRWNKLGQAFTHTS
                     AMKSVTIGSFFGPFIGVALGLFAIQQTKTGIASTLMGLVPIFIIVPSAIMFKEKIRPQ
                     QVIGAIVSIAGATLFFL"
     gene            3181..3588
                     /locus_tag="VI413_12120"
     CDS             3181..3588
                     /locus_tag="VI413_12120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915414.1"
                     /translation="MPKEDYLLKYLEKLSRVIAAMIGLRDKGFPEDAIRLADEAYKEL
                     LNFNVEELAVMPVEKFVQIVRDAGYTSTYLEALAKLSYETGYAFQMQDNAGFANVFFQ
                     KTLQIYYLLNEKDKTFSFEREMIISELSEKLNN"
BASE COUNT         1130 a          660 c          811 g         1022 t
ORIGIN      
        1 atttactgct tataagttct ttataatcct ataaaattta atattatgaa gaccgaacaa
       61 gttcttgata atttgaagtg gcggtttccg aatgaaccgg aatattatca ggccgttgaa
      121 gaagtgctgc tttctattga agacatttat aatgcgcatc ccgaatttga gaagcataat
      181 attatcgaac gtatttgcat tccggatcgt atcttttcgt tccgcgtaac gtgggtggac
      241 gatcagggga atgtgaaaac gaatatggct taccgggtgc agcataacaa tgccattggt
      301 ccctacaaag gtggaatccg tttccacgaa tcggtttgcc cttctattct gaagtttttg
      361 gcatttgaac aaacatttaa aaatgcactt acaacactcc caatgggtgg tgccaaaggt
      421 ggttctgatt ttagtccgca aggccggtcg gatggcgaag tcatgcgttt ttgccaggct
      481 tatatcctgg aactttggcg gcatattggc cctcaaaccg acgttcctgc cggtgatatc
      541 ggagttggag ggcgtgaagt ggcttacatg tatggcatgt atcggaaatt agcacgtgaa
      601 aatacgggtg cattcaccgg aaaagggctg gagtttggtg gctcgcttat ccgcccagaa
      661 gcaaccggtt acggtaatat ttacttcctg atgaatatgc tcaaacgtaa aggaattaca
      721 gacctgaaag ggcaggtggt ggctatttcg ggagcaggaa acgtggcaac ttacacggca
      781 gagaaagtaa tcgagctggg aggtaaagta ataaccatgt cggatagcaa cgggtatatt
      841 tacgaaccgg atggaattga caccgaaaaa ctggcttata tcttcgacct taaaaatgta
      901 cggcgtggac gaataaaaga atacgcggca aaatatggat gcaaatatgt ggaagggcag
      961 cgtccgtggt ccgaaaaatg cactattgca ttaccatcgg ctacccaaaa cgaaattaca
     1021 ggtgaagatg ctgaaatgtt ggtgaaaaat ggttgcatgg ctgtgtccga aggtgccaat
     1081 atgccttcga caagcgaagc tattgatgtt ttcctgaaga ataagatttt atttgctccg
     1141 ggtaaagcgg ctaatgccgg tggcgtttcg gtttccggac tggaaatgtc gcaaaatgct
     1201 atgaaactca gttggcaaaa ggaagaagtt gacggccggt tgcagcaaat tatgcagagc
     1261 attcatgagt cgtgtgtgaa atatggtact gagcccgatg gttttgtcaa ctacgtgaaa
     1321 ggtgccaaca ttgcaggatt tatgaaagtg gcaaaagcca tgatggcgca gggagtgatt
     1381 tgattaatgg ttctgagttt tgagtgagga aaaactcttt tccaaagttt cttttacttt
     1441 ggaaaagatc aatagagccc atggtgcatt ggatagatat tttcaatgaa attaaaatcg
     1501 attgatcgta tactgtttgc taacgagtga cctcatccgg tgaaccaaaa aacaagtgag
     1561 aaaagtgtaa aaatactcct gtttgacgac cgtaaggagg agtttggagg attttagctt
     1621 tttcgagcgc tggttttttt agtgaagcgg gtgaagtctt gatttttttt gcttcatttt
     1681 ttatcaagaa aaaaaatgaa gtggggtttg gggtaaagcc ccaagtgatt tcttaaagga
     1741 ttttataaat gatttacgga ttaatagatt ataaatacca aacacataga ttaacatagt
     1801 ggcatactca cacatagttt tttagaataa atagtacaca taggtagcta taatgcgttt
     1861 tgtaattatg cgttctaggt atttataaat ccttattgga tgtctatgtg taacaccgca
     1921 ggtgttctat gtttacttgt tttaaaacta tgtgggccta tgagagaact atgagccgct
     1981 atgtgtcata taaaataatt catagcttag atttctataa gaaaaacaac gtggctccgg
     2041 caatactcac aatggctcca atcacttgtt gaggtcttat tttttcttta aacataatag
     2101 ctgaaggcac aatgataaat atcggtacaa gtcccatgag cgtggaagca atgccggttt
     2161 tggtttgctg gatggcaaaa agccctaacg ccacacctat aaatggtccg aaaaatgaac
     2221 ctattgtaac tgatttcatg gcactggtgt gcgtaaacgc ttgccctaat ttgttccaac
     2281 ggccaatggc ggttatcagt attccaaaac taactaatcc aaacaatgca cggatttgtg
     2341 tggcagccac cggatcgtaa tctcccatgc cttttttgct gagaatcaat cccaccgctt
     2401 gccccattgc accaccaaag gccagtagaa aacctttgaa gggaatgttc agcttcattc
     2461 tgcggttgga aatggccaga ataatgccgc ttacgcttat aaagatggca ataatatttc
     2521 tgggcgaaag aatctcgtcg aggaaaaacc aaccgataac agccgtaagc ataggagcaa
     2581 ggctcataat caaagctgcg gttcgcgacc cgataaccat gtacgattga aacagaagca
     2641 tgtcgccgag gaagaaaccg ataaaaccgg ataatccgag ccaaaaccac tggtagcccg
     2701 tggcgtcggt cggaaaaaat aacccgcgac tgaaaaatgt ggtaattccc aaaaatccga
     2761 tggcaaagag caatcggata aaattgactg ataatgaacc tattttgtga cctgcttttt
     2821 cgaaaaacaa agcactcatc gtccagcaaa ccgaaacgcc cagtccggca aattctccta
     2881 tatgcgattg aaacacactt tttttttatt tacgattaat acatttacga tttacaattg
     2941 aaatacaaag cttatagcaa ttgaaaattt atgcaaagat agggaagaaa ttcataaata
     3001 atgaattata atgcgtaatt gtgcatgcac ttgaaatata ataaattaca ataatttgga
     3061 atcgcatagc aatgaaatac aattatttag ctatctttgt agcccaaatt agatttggaa
     3121 aatctaattt gtaactttct tactggtaac tgcttactat ttacttataa ctgaatttcc
     3181 gtgcctaaag aagattattt actgaaatat ctggaaaaac tcagccgtgt aattgcagcc
     3241 atgattggtt tgcgggacaa aggatttccg gaagatgcca tccgcctggc tgatgaagca
     3301 tacaaagaac tcctcaactt caatgtagaa gagttggcgg ttatgcctgt cgaaaagttt
     3361 gttcaaatag tacgtgatgc cggttacaca tctacttatc tggaagcgct ggcaaaactt
     3421 tcgtacgaaa caggatatgc ttttcagatg caggataatg ccgggtttgc caatgttttt
     3481 ttccaaaaaa cacttcagat ctattatctg ctgaacgaaa aagacaagac attttctttt
     3541 gaacgagaaa tgataatttc ggaattgagt gagaaattaa acaattaaac agggccttta
     3601 gtctttcggc ttcaggcatt aga
//
LOCUS       DATDNM010000719         2896 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1688864, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000719 DATDNM010000000
VERSION     DATDNM010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2896
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1688864"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..506
                     /locus_tag="VI413_12125"
     CDS             <1..506
                     /locus_tag="VI413_12125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HEY6915415.1"
                     /translation="KIELFDKENYQAYVSTSPDWLKNMVKEYDGNPYGRLVEMAKLAQ
                     KDGVIKGILLHQGESNTGDTLWTKKVKLVYDNLIKDLNLNPKKVPLLAGETVNTDQGG
                     ACASMNKIIATLPATIPNSYVIPSTGCLAINDHLHFTTAGYRELGKRYAEQMLSILGY
                     KIKVTEK"
     gene            697..>2896
                     /locus_tag="VI413_12130"
     CDS             697..>2896
                     /locus_tag="VI413_12130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007216484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 127 protein"
                     /protein_id="HEY6915416.1"
                     /translation="MKFRLFFFLIVCLSVGNVAVQAQDKLYPNEFPLRDVKLLDGPFK
                     QARDLNIQTLLKYDVDRLLAGYRKEAGLVEKAKSFSNWDGLDGHIGGHYLTALAINYA
                     ATGNAECKKRLDYMITELKDCQQANAQKYPDWGVGYVGAVPNGVALWPVIKGGDISPI
                     WKFWVPWYNVHKMYAGLRDAWLYAGNDEAKNIFIRFCDWGINITAGLSDAQMESMLGN
                     EHGGMNEIYADAYNMTGDQKYLTAAKRFSHKMLLDAMAADNDNLDNKHANTQVPKVIG
                     FERIGELTHDKNYSEAGRFFWETVTTKRSLAFGGNSRKEFFPSAATCEDFVNDVEGPE
                     SCNTYNMLKLTEDLFRVNPLAKYADFYEKALFNHILSTQHPDHGGYVYFTPARPRHYK
                     VYSAPNEAMWCCVGSGMENHGKYGQFIYTHKNDSLFLNLFIASELDWKEKGIKIRQET
                     KFPFEEQTNLKIISGTSRFKLMVRYPSWVKQGDLKILVNGKPVSYTSQSSIYVAVDRN
                     WKTGDEVKVLLPMHNSVEQLPNVPNYLAIMHGPILLGAKTGTEDLKGLVANDSRWGHI
                     AGGERLALDKAPIIIEDDFTKIADKLVPVKNKPFTFELPEIKLINPVKIELIPFYQIH
                     DSRYMIYWMTLTNNQYRSYLDSISNLEKNKLDIQKRTIDFVAPGEQQPEADHFIQKEN
                     STTGNKFNEFWRDARNDGFFSYKMSTNAETDLSLVVRYCGAEQGGRKFDIF"
BASE COUNT          948 a          492 c          632 g          824 t
ORIGIN      
        1 gtaaaattga gctttttgat aaagagaatt atcaagcata cgtttcaaca tctcccgatt
       61 ggttgaaaaa tatggtaaaa gagtatgatg gaaaccctta cggccgcttg gtggaaatgg
      121 caaaactggc acaaaaagat ggtgtcatca agggcatttt gttgcatcaa ggagagtcga
      181 acaccggcga tacactttgg acaaagaaag tgaagttggt atatgacaat ttgataaagg
      241 acctcaacct gaaccctaaa aaagtaccac ttttggccgg tgaaactgta aatacagatc
      301 agggaggtgc ttgtgcaagt atgaataaaa taattgctac gttacccgct accattccta
      361 attcgtatgt cattccatca acaggctgtt tggccataaa cgatcatttg cattttacga
      421 cggctggtta ccgtgagctt ggaaaacgtt atgccgaaca aatgctttcg atattgggat
      481 ataaaataaa ggttactgag aagtaattgt cttatgttta tgtgtttaag tggtaaatat
      541 aatactgcgc attatttata acatattgcg aagtaaatag atatagaaat tgatataata
      601 caaaatgaaa aaaatctatc ctgttcaaag attaaataaa ttggaggata gattttttta
      661 gagatacatt aaataactaa gattaaattc agatatatga aatttagatt atttttcttt
      721 ttaattgttt gtttatcagt tggtaatgtt gcggttcagg cacaagacaa actatatccc
      781 aatgagtttc cgctgaggga tgtaaaatta ctggacgggc cattcaaaca agctcgtgac
      841 ctcaatatcc aaacgctttt gaaatatgat gtcgaccgac tattggccgg ataccggaaa
      901 gaagccggcc tggtggaaaa ggccaaaagc ttttccaatt gggatggatt ggatggtcat
      961 attggtggtc attacctaac cgctttggcc ataaattatg cagctacagg caatgcagaa
     1021 tgtaaaaaac ggttggacta tatgatcacc gaattaaaag attgccaaca ggcaaatgca
     1081 caaaaatacc ccgattgggg tgtaggatat gtgggagctg ttcccaatgg tgtcgcttta
     1141 tggccggtga ttaagggtgg tgacattagt cctatctgga aattttgggt tccctggtac
     1201 aatgttcata aaatgtatgc cggacttcgg gatgcatggc tgtatgccgg caatgatgag
     1261 gccaaaaaca tattcattcg tttttgcgat tggggaatca atattacggc aggattgtcg
     1321 gatgcgcaaa tggagagtat gctgggaaat gagcacggag gtatgaacga gatctatgcc
     1381 gatgcataca acatgaccgg tgaccagaaa tatctgacag cggccaaacg attctctcac
     1441 aaaatgttgt tggatgcaat ggctgccgat aacgataatc tggataataa acatgccaat
     1501 actcaggtac caaaagttat tggattcgag agaattggag aacttactca cgataaaaat
     1561 tattcagaag cgggacgttt cttttgggaa actgtaacta caaaacgatc gcttgcattt
     1621 ggaggaaaca gtagaaaaga attctttcct tcagctgcga cttgtgaaga ctttgtcaac
     1681 gatgttgaag gcccggagtc ttgtaataca tacaatatgc ttaagttgac cgaagattta
     1741 tttcgggtaa atcctttggc gaaatatgca gatttctacg aaaaggcttt gtttaaccat
     1801 atcttatcca ctcagcaccc cgatcacgga ggttacgttt atttcactcc ggcacgacca
     1861 cgtcattaca aggtttattc tgctcccaat gaagcaatgt ggtgttgtgt gggtagcggt
     1921 atggaaaatc acggaaaata tggccagttt atttatactc ataaaaatga ctcgttgttt
     1981 ttaaatcttt tcatagcatc ggaacttgat tggaaagaaa aaggaattaa aatcaggcaa
     2041 gaaacaaaat tcccatttga ggaacagacc aacctgaaaa ttatcagcgg tacttcacga
     2101 tttaaattaa tggttaggta tccgtcgtgg gtaaaacaag gtgacctgaa aattttagtg
     2161 aacggcaaac cggtatcata cacatcacaa tcttcaatct atgttgccgt tgacaggaat
     2221 tggaaaacag gtgacgaggt aaaggttttg ttgccaatgc ataattctgt agagcaattg
     2281 cctaatgtgc ctaattattt agctattatg catggcccaa ttttactggg tgctaaaaca
     2341 ggaaccgaag acttaaaagg attagttgca aacgatagtc gttggggaca tattgccgga
     2401 ggtgaaaggt tagctttgga caaagctccg attattattg aagacgactt tacaaaaatt
     2461 gccgataagt tagttcctgt aaagaataag ccattcacat ttgaactccc ggagattaaa
     2521 ctaatcaatc cggtaaaaat tgaattgata cctttttacc agattcacga ttcacggtat
     2581 atgatttatt ggatgacgct tactaataat caataccggt cttatctgga ttctatttca
     2641 aatttggaaa agaataaatt agatatacaa aaacgaacca ttgactttgt agcaccgggc
     2701 gaacaacaac cggaagcaga ccatttcatt caaaaagaaa actcgacaac gggtaataag
     2761 tttaatgaat tttggcgtga tgcccgaaat gacggatttt tcagttacaa aatgtctacc
     2821 aatgctgaaa cggacttgtc gttagttgtt cgctattgtg gagcagaaca gggaggtcga
     2881 aaattcgaca ttttta
//
LOCUS       DATDNM010000720         3566 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1154042, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000720 DATDNM010000000
VERSION     DATDNM010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3566
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1154042"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..238
                     /locus_tag="VI413_12135"
     CDS             <1..238
                     /locus_tag="VI413_12135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005861780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915417.1"
                     /translation="EGKRWRFVAKMENGSCSVGLQEVDSLHPFFDLQGSNNIILITTE
                     RYNEFPMMIKGYGAGAGVTAAGVFSDIMSIANIR"
     gene            271..789
                     /locus_tag="VI413_12140"
     CDS             271..789
                     /locus_tag="VI413_12140"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEY6915418.1"
                     /translation="MKKKGFLFVLCLCAGFYSCKKQAPQIPSNKVVVDNTEAQTLLDI
                     NQNLALKEDSSLEIFARKKDKSFIKNEIGFWYKIELAGSGPKVADNSTCNFSYKLLLM
                     NGKTIETSKKHVVIGKKQIVAGLEAGLKMLHYGDSATFIIPWYLGYGMNGNKPQIPPY
                     TSIIYHIKLDNQ"
     gene            892..1431
                     /locus_tag="VI413_12145"
     CDS             892..1431
                     /locus_tag="VI413_12145"
                     /inference="COORDINATES: protein motif:HMM:NF027435.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4827 family protein"
                     /protein_id="HEY6915419.1"
                     /translation="MKQISYLIILSFFASIAFSSCSDTSYANELKQEKILIAEYIKRN
                     HINVLSGFPKDKKWGENDYVLTESGLYFHLVDSGEIAVGDTIKPNDLVVPRYKEYNLY
                     EVADTLTSNWSTIDYPYPSSFKYLDMTQSCAAFHEAAKYMVRNNSRAKLIVKSKIGFE
                     TYWTPATPLAYEIKIKVQK"
     gene            1551..2942
                     /gene="glmM"
                     /locus_tag="VI413_12150"
     CDS             1551..2942
                     /gene="glmM"
                     /locus_tag="VI413_12150"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEY6915420.1"
                     /translation="MTLIKSISGIRGTIGGPVGDGLNPLDIVRFTAAYATQIKASKQT
                     ESTKIVVGRDARISGEMVNQLVIGTLLGMGFDVVNIGLATTPTTELAVTMEKAAGGII
                     LTASHNPKQWNALKLLNEKGEFLNAIEGENVLKIAAEESFEFSQVDELGKLSENFSYT
                     QKHIESVLALELVDVEAIKTAQFSVAIDCVNSVGGIVIPELLEALGVKNIETLYCEPN
                     GQFPHNPEPLPEHLTEISNLMKLGKADVGFVVDPDVDRLAIICEDGSMFGEEYTLVSI
                     SDYVLQHTPGNTVSNLSSTRALRDVTNNRGGKYTAAAVGEVNVVTAMKATNAVIGGEG
                     NGGVIYPASHYGRDALVGIALFLTHLAKSKLSVSALRKTYPEYYISKNKIQLTPAIVV
                     DAILMAIKGIYKHYEVNDIDGVKIDFPTGWVHLRKSNTEPIIRIYSESGTPEQAEAFA
                     KAIIEEIKRIANI"
     gene            complement(3029..>3566)
                     /gene="lptC"
                     /locus_tag="VI413_12155"
     CDS             complement(3029..>3566)
                     /gene="lptC"
                     /locus_tag="VI413_12155"
                     /inference="COORDINATES: protein motif:HMM:TIGR04409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HEY6915421.1"
                     /translation="TIVGGLFLLFCIASCNKDDKPEKIAAIVDRSAMARLHATDITTV
                     ISDSGITRYRISAPCWNVYDRANQPYWEFPQGIHFERFDLNLKVDANIHSEYAKFNEN
                     EQLWELRKNVKMTNIQGQLFETNQLFWNQREERFYSDSAIKITDATHIIKGIGFESNQ
                     NMTKYSIRKNQGVFPVKE"
BASE COUNT         1177 a          669 c          679 g         1041 t
ORIGIN      
        1 agaaggcaaa cgttggcgct ttgtggccaa aatggaaaat ggaagctgca gcgttggttt
       61 acaagaagtt gatagtttac atcctttctt cgatttgcag ggaagcaata atatcatcct
      121 gattacaact gaacgctaca atgaattccc tatgatgatt aaaggttatg gggccggagc
      181 cggtgtaaca gctgctggcg tattttcaga cataatgagc attgccaata taagataggc
      241 ctgccggttt ttagaaaaga atgtgtgaaa atgaaaaaaa aaggcttcct atttgtacta
      301 tgtctgtgtg caggatttta ttcgtgcaaa aaacaagcgc cgcaaatacc ttcaaacaag
      361 gttgttgtag acaacactga agcccaaaca ctgcttgata taaatcaaaa cttagcgtta
      421 aaagaagata gctcactcga aatatttgcc agaaagaaag ataaatcatt tatcaaaaac
      481 gagattggat tttggtataa aatagaactt gctggaagtg gcccaaaagt tgcagacaat
      541 tcaacatgta atttctccta caagttacta ctaatgaatg ggaaaactat tgaaacgagc
      601 aaaaaacacg tggttatagg taaaaaacaa attgttgcag gacttgaagc cgggttgaaa
      661 atgctgcatt atggtgatag tgctaccttt attattccat ggtatttagg ctatggtatg
      721 aatggtaata aaccgcagat tcctccttac acttctataa tctatcatat taagcttgac
      781 aatcagtaat aaatgtatta atcactacat atcttataac tttattcatt ttcttaactt
      841 tttattccca taatttaatc ggatatttgc aataaaaaat aatctactga tatgaaacaa
      901 atttcttatc taataattct ctcgttcttt gcatcaattg ctttttcatc ttgcagcgac
      961 acctcttatg ctaacgaact aaagcaagaa aaaatactaa ttgccgaata cattaaacga
     1021 aatcacatca atgtattgtc tggttttcca aaagataaga aatggggaga aaacgactac
     1081 gtattaacag aaagtgggtt gtattttcac ttggttgatt cgggagagat tgctgttggc
     1141 gatacaataa aaccaaatga tttagttgtt cccagatata aagaatacaa tttgtatgaa
     1201 gtagccgata cacttacaag caactggtca acaatcgact atccatatcc aagctctttc
     1261 aaatacttag atatgacaca atcatgcgct gcatttcacg aagcagccaa atatatggta
     1321 agaaataatt cgagggcaaa attgatcgtc aaatcaaaaa ttggttttga aacttactgg
     1381 actcctgcta caccgttagc ttatgaaatc aaaattaaag ttcagaaata gattctgata
     1441 aatataattc aacaacccgc gcggattacc tgtacgagtt gttgtttttg tttttagccc
     1501 cgaaccccct taccttttat tgaaacaaca gaacatcaaa cttaattaat atgacactta
     1561 tcaaatcaat ctccggaatt cgtggaacca taggcggacc ggttggtgat ggattaaatc
     1621 cccttgacat tgtgcgattt acagcagctt atgccacaca aattaaagcg agtaagcaaa
     1681 ctgaatcaac aaagattgtt gttggccgcg atgcccgaat ttcaggcgaa atggtgaatc
     1741 aacttgttat cggaacattg ctgggcatgg gcttcgatgt cgtgaatatt ggactcgcta
     1801 ctacacctac caccgaatta gcggtaacca tggaaaaagc ggcaggaggc atcatactca
     1861 ctgccagcca taatccaaaa caatggaatg cattgaaact tttgaacgaa aaaggtgaat
     1921 ttttgaatgc aattgaaggt gaaaatgtat taaagattgc ggccgaagaa agtttcgagt
     1981 tttctcaggt tgacgaattg gggaaacttt cagaaaattt ctcgtataca caaaagcata
     2041 ttgaaagcgt attagccctg gagcttgttg atgttgaagc tattaaaacg gctcaattca
     2101 gcgttgcaat tgattgtgta aattcagttg gcggcattgt tattcctgaa ctattagaag
     2161 cattgggagt aaaaaatatt gagacactct attgcgaacc caatggacaa ttccctcaca
     2221 atccagaacc tcttcctgag catcttactg aaatttcaaa cctaatgaaa ctaggcaaag
     2281 ccgatgtagg ttttgttgtt gacccggacg ttgaccgcct ggcaattatt tgtgaggacg
     2341 gaagcatgtt tggagaagaa tacaccctcg tttccatctc ggactatgtg ttacaacata
     2401 cacctggaaa tacagtttca aacctgagct caaccagggc tttacgtgat gtaacgaaca
     2461 accgtggtgg aaaatataca gctgctgctg ttggagaagt aaacgtggta acagccatga
     2521 aagctaccaa tgcagttatt ggtggcgaag gaaatggagg ggttatatat cctgccagcc
     2581 actatggacg ggatgcactc gttggtattg cattattcct gactcatttg gcaaaatcaa
     2641 aactttctgt ttctgctttg cgaaaaacct atccggaata ttatatatct aaaaataaaa
     2701 tccaactaac accggcaatt gttgttgatg ccattttaat ggccattaaa ggcatctaca
     2761 aacattatga agtgaacgac attgatggag taaaaatcga tttccctacc ggttgggtac
     2821 atttacgcaa gtcgaataca gagccgatta tccgcattta ttctgaatcc ggaacaccag
     2881 agcaagccga ggcatttgca aaagctataa ttgaagaaat aaaaagaatt gccaatatct
     2941 aaggctgatt aatgtaaaaa aaggactcat tccattagac ggaatgagtc ctttttgctt
     3001 tatatattgt tgtttccggt cttctctcct attccttaac cggaaaaaca ccctgatttt
     3061 ttcgaatact atatttagtc atattttgat ttgattcaaa accaatacct ttgataatat
     3121 gcgtggcatc tgtaattttt atcgcactat ctgaataaaa ccgctcttcc cgttgattcc
     3181 agaacaactg gttagtttca aaaagttgtc cttgaatatt agtcattttt acatttttcc
     3241 gcaattccca aagctgttca ttttcattga attttgcata ttcactgtga atattagcat
     3301 caactttcag attcaaatca aagcgttcaa aatggatacc ctgaggaaat tcccaataag
     3361 gctggttagc cctgtcatac acattccagc atggggcgga gatgcgatag cgtgtaattc
     3421 cggagtcaga aataactgtg gtaatatcag ttgcatgaag cctggccatt gcagaccgat
     3481 caacaattgc agcaatcttt tccggcttat catccttatt acatgatgct atacagaaaa
     3541 gcagaaacaa accaccaaca attgtt
//
LOCUS       DATDNM010000721         3100 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_300952, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000721 DATDNM010000000
VERSION     DATDNM010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3100
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300952"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..373)
                     /locus_tag="VI413_12160"
     CDS             complement(8..373)
                     /locus_tag="VI413_12160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEY6915422.1"
                     /translation="MKLILAMIRIDKMAATKLALSDAGLPSFTAMPVLGRGKGKGGFE
                     KAAGLDEDQQELIIEMPRLKSKRMITLVVTDEKKELAIETLIKVNSTGKSGDGKIFVI
                     PASDSIRVRTGESGDITLD"
     gene            complement(503..826)
                     /locus_tag="VI413_12165"
     CDS             complement(503..826)
                     /locus_tag="VI413_12165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEY6915423.1"
                     /translation="MYLLRAIVRPEKSTAVMKALFDAGFPAITKLAVFGRGKQRGIKV
                     GNVTYDELPKDLLMMVIPEKDKDFVIETIMLAARSGEKGQFGDGKIFVTPVEESYTIS
                     SGKKD"
     gene            complement(941..1765)
                     /gene="nifH"
                     /locus_tag="VI413_12170"
     CDS             complement(941..1765)
                     /gene="nifH"
                     /locus_tag="VI413_12170"
                     /EC_number="1.18.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012573569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016611 - iron-iron nitrogenase complex
                     [Evidence IEA];
                     GO_component: GO:0016612 - molybdenum-iron nitrogenase
                     complex [Evidence IEA];
                     GO_component: GO:0016613 - vanadium-iron nitrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0016163 - nitrogenase activity [Evidence
                     IEA];
                     GO_process: GO:0009399 - nitrogen fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogenase iron protein"
                     /protein_id="HEY6915424.1"
                     /translation="MRKIAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADST
                     RLLLHGLAQKTVLDTLRDEGEDIDLDDVMKPGFKETSCVESGGPEPGVGCAGRGIITS
                     INLLEQLGAYDDDKQLDYVFYDVLGDVVCGGFAMPIRDGKAEEVYIVCSGEMMAMYAA
                     NNICKSISKFGKVGTVRLGGLICNSRKVDNEANMIEEFAKKLGTQMIHFVPRDNMVQH
                     AEINRKTVIDHAPEHPQADEYRSLAKKINDNTMHVIPTPLAMQELEDLLVGFGILN"
     gene            2169..2516
                     /locus_tag="VI413_12175"
     CDS             2169..2516
                     /locus_tag="VI413_12175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915425.1"
                     /translation="MKQYLVAIVRDEINQPGNFESSRKHLKAYCENESLDYTALMSDL
                     RQFFGLLADYNQIKDPVLYKFLTWQACNCFFDEAMFGLLPILPPEEINPESFGRTTSA
                     THCGMVGGHLIGL"
     gene            2518..>3100
                     /locus_tag="VI413_12180"
     CDS             2518..>3100
                     /locus_tag="VI413_12180"
                     /inference="COORDINATES: protein motif:HMM:NF042586.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6734 family protein"
                     /protein_id="HEY6915426.1"
                     /translation="MKQPPYNAFHTLWTKPVITAGKHFGMSAAEILTMIVSALMWRKH
                     NGSIKLYTDIAGYEFVSKHNLLELWDGIDTDVLENNSYPIAPEVFWAAGKLMALEDAA
                     APCVMLDTDLVVLKPIATTLSQSTITALHAEALVPDAYLPAHLLKKPSGYTFPDYYNW
                     EVLSANTAFLFIRDGKFKRFYLDESKKFMFCNVE"
BASE COUNT          816 a          705 c          607 g          972 t
ORIGIN      
        1 tcgttaatta atctagtgta atatctccgc tttcacctgt gcgtacacgt atagaatcgc
       61 tggcagggat tacaaatatt ttaccatcac cacttttacc agtactgttg actttgataa
      121 gtgtttcaat agccaattct tttttctcgt cggtaactac cagtgtaatc attcgtttgg
      181 atttcaaacg aggcatctca ataatgagct cctgttgatc ttcgtccagt ccggcggctt
      241 tttcaaaccc gccttttcct ttcccgcgtc ccaacaccgg catagccgtg aacgaaggca
      301 gaccggcatc cgaaagagcc aacttggtag cagccatttt gtcgatgcgt atcattgcta
      361 atattaattt catatacaat ttttttaacg gccccaaacc cctaaagggg cttaaagacc
      421 aggtttatga taagccctgt cccattttag atactccgtc ttactccccc cttcaggggg
      481 ctggggggcc ggccgttggt tttcaatctt tcttaccgct cgaaattgtg tagctctctt
      541 ctaccggagt aacgaagatt tttccgtcac caaactgacc tttttcgcct gagcgagcag
      601 ccagcatgat ggtttcgatc acgaaatctt tgtctttttc aggaataacc atcataagca
      661 aatcttttgg aagctcatcg tatgttacat ttcctacttt gataccacgt tgtttaccac
      721 gaccgaatac ggccagttta gtgattgccg gaaaacctgc atcgaataat gctttcatta
      781 ctgccgttga tttctccgga cgaactattg ctcttaataa atacataatg tttagttttg
      841 acccccgccc cctaaagggg agtaagaagg ttgtgtttat aaataaattt gattgtttgc
      901 actccgccca aagccccctt tagggggttg ggggtcgttc ttagttcaaa ataccaaacc
      961 ctaccaatag gtcttccaat tcttgcatgg caagcggagt agggataacg tgcatggtgt
     1021 tgtcgttgat tttttttgcc aatgaacggt attcgtcggc ttgcgggtgt tcaggagcgt
     1081 ggtcaattac cgttttacgg ttgatttctg catgttgaac catgttgtcg cgtggtacga
     1141 agtggatcat ctgagtgcca agttttttcg caaactcttc aatcatgttg gcttcgttgt
     1201 ctactttacg tgagttacaa atcagaccac ccaaacgtac tgtaccaact tttccaaatt
     1261 tagagataga tttacaaatg ttgttggctg catacatagc catcatttcg cccgagcaaa
     1321 cgatgtaaac ttcttctgct ttaccatctc ggattggcat ggcgaatcca ccgcaaacaa
     1381 cgtcacccaa tacgtcgtag aatacataat ccaactgttt gtcatcgtcg taagcgccaa
     1441 gttgctccag caagttgata gaagtaataa taccacgacc ggcacaacct acacccggtt
     1501 ccggaccacc tgactcaaca caactggttt ctttgaatcc aggtttcata acatcatcca
     1561 aatcgatgtc ttcgccttcg tcgcgcaagg tgtccaaaac tgttttttga gccaaaccat
     1621 gaagtaacaa acgagtagag tctgctttag ggtcacaacc cactaccatt actttttttc
     1681 ccatttctgc caaaccggca acagtgtttt gcgttgtggt acttttacca attccgcctt
     1741 ttccgtagat cgcaattttt ctcatctttt ttatatttta aatgaataac taatgtttct
     1801 tttctgatgt ttttttgaat aacctgacaa cccttagtca tttttcgtgc cattaacaat
     1861 ttgatccgat ttttaaagtc ttgttttatg agttaattcg ttgaaatata aatagataaa
     1921 aagtctgatt ttaagagcca acttgcggtt cgactaaaat gttgttttgt agtgttgtgc
     1981 taaaatctta catctatgta gggttttata cttaaaaggt aggaaacgtg gctccggaaa
     2041 tcagtattga tttaataaaa taaacctgta tatttgcaat cttgaaacag tcataatctc
     2101 attacccacc ttccaaaatg caagtcaacc ccgattcaaa attcattatt ccgccggtct
     2161 ccaatgcgat gaaacaatac ttagttgcta ttgtacgaga tgaaatcaat caacccggga
     2221 atttcgaaag cagcaggaag cacttgaaag cttattgcga aaatgaaagc ttggattata
     2281 ctgctttgat gtcggacctg cgccagtttt tcgggttgct tgccgattat aaccagatta
     2341 aagatcctgt tttatataaa ttcctgactt ggcaagcctg caattgcttt ttcgatgaag
     2401 ctatgtttgg tttgttgccc attttaccgc ccgaagaaat taatccggaa tcattcggtc
     2461 ggactacatc tgcaactcat tgcggcatgg tgggcggtca tttaatcggg ctataatatg
     2521 aagcaacctc cttacaatgc ctttcacacc ttgtggacaa aacccgttat aactgccgga
     2581 aagcattttg gaatgagtgc tgccgaaatc ctgaccatga tagtgtcggc actgatgtgg
     2641 cgaaaacaca atggttccat taaactttat accgacatag cgggctatga atttgtgagt
     2701 aaacacaatt tgctggagct atgggatggt attgacaccg atgtgctgga aaataactct
     2761 tacccgattg cccccgaggt attttgggct gccggaaaac tgatggcact ggaagatgcc
     2821 gctgcccctt gtgtaatgct cgataccgac ctggttgtgc tgaaacccat tgccactacg
     2881 ctctcccaat caactataac cgctttgcat gccgaagctt tggtccctga tgcttatttg
     2941 ccggcacatt tacttaaaaa accttccgga tatacatttc ccgattatta caattgggag
     3001 gttttgtctg ccaatacagc atttcttttt attcgcgacg gaaaattcaa acgcttttac
     3061 ctcgatgaat ccaagaagtt tatgttctgc aatgtagaaa
//
LOCUS       DATDNM010000722         2223 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1476399, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000722 DATDNM010000000
VERSION     DATDNM010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1476399"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            374..946
                     /locus_tag="VI413_12185"
     CDS             374..946
                     /locus_tag="VI413_12185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915427.1"
                     /translation="MKKTVLLLIVLVFALSVSAQENRHRFDFKIGTGLGFMGSGDLPA
                     LCFENELNYKLNSYLSTSLSLGIGRTPKDIYTHNDYLLGSLNLFISPFKNTGRNNFKI
                     GGGFTLINETSLYDPNVYYDRNNRDFNEGAYNNGFDYLTRMVNGFSVMLEDEYMINSK
                     FLVGGKLFVTGGEKEGGVVSGAMIKLGIVL"
     gene            1477..>2223
                     /gene="map"
                     /locus_tag="VI413_12190"
     CDS             1477..>2223
                     /gene="map"
                     /locus_tag="VI413_12190"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEY6915428.1"
                     /translation="MSITNEQEFIGIKKASEAVAHTLKEMRNYAKPGMTTKQLDEFGG
                     QLLKEFGAKSAPYVSYNFPGWTCISLNNEFCHGIPSNNRVLQEGDLINIDVSAELNGF
                     FSDNGGSFVLGNDKNQYQNLVNASKDILHKAIHNIKGGVRISDIGLLIETEAKKRGYK
                     VIKNLTGHGVGHKLHEAPDEIPNFRDKHNTARFRKNSVVAIETFISTTSTYAETLGDG
                     WTMIGNKGGFMAQHEHTILVTDGKPIILTEM"
BASE COUNT          755 a          364 c          454 g          650 t
ORIGIN      
        1 attcaaagaa attgacaact ggaataatgg acaagaatat tcagtttgtc gtttgtctga
       61 aaaaggagaa aattggattc tttcaaatca agaacaactt gaatttagaa aagcaaaaac
      121 aacagcacaa aaaattgacg atagcttacc tttctgacaa aaaagtatgc ccataacaac
      181 gcctcgtatg tttattgact gcttgacttg cattcagtag tttttgctcc cgcattcact
      241 ttgtcgcctc gcgacagtaa acacttctgc aaatgaaaca tcccgtgtaa cggtgaccgc
      301 caaatgcaca taataagttg acgcgattcg agaacaagaa attaatgact tattaaaatt
      361 tacattgaac aacatgaaaa aaacagtatt gcttctcatt gttttggttt tcgcattaag
      421 cgtgtcagct caggaaaaca gacacagatt tgactttaag atagggacgg gcttaggatt
      481 tatgggaagc ggtgatttac ccgctttgtg ttttgaaaat gaattaaatt acaaactgaa
      541 cagctatttg tcaacttcac ttagtttggg tattggaagg actccgaaag acatctacac
      601 tcataacgat tatttactgg gaagtttaaa cctgtttatt tcaccgttca aaaatacagg
      661 aagaaacaac ttcaaaattg gtggtggctt tacgctcata aatgaaacaa gtctatacga
      721 tccgaatgtg tattacgaca ggaataacag ggattttaat gaaggcgcgt ataataatgg
      781 atttgattat ttaactcgta tggtaaatgg atttagtgtg atgctggaag atgaatatat
      841 gataaattct aaattcctgg ttggaggaaa attattcgtt acaggcggag aaaaagaagg
      901 gggagttgta agtggagcta tgattaaact aggaatagta ttataaaaac gaatgcattt
      961 ttactaagcg tttataatca ttagcccggt tgcttgtagc ttgccgggct ttttgtttgg
     1021 cctggtgctt tcgttcgtag ctattatttc aactcacggc agcaagaagg ccggggcatg
     1081 aacattaaaa ttaaataaac ctgaaaacaa ttagcatgag atgggtgttt ttcgtaactg
     1141 ttttatctct attcacttct tgtggaacaa tagtatttag ggatgttacc tgtcgcgatt
     1201 ttaagttgaa gtaaataatg tcgtattttt attttattga gaaaatgtat ttcaattgcc
     1261 gtcccattta tgggacggat aaaatgatat agatttacac ggctttagcc aaattttcaa
     1321 tacatattgg ctaaagccaa tatgtttttt ttccatcagc ccgcctcata aatgggacgg
     1381 caattgaaac aagaaatgcg gcattatatc tttcctgtta cttacaagtg ctagtagcac
     1441 taaaaaacaa agttgaaaat taaatataaa tcaaacatgt cgataacaaa cgaacaagaa
     1501 tttattggaa ttaaaaaggc aagcgaagca gttgcccaca cactcaaaga aatgagaaac
     1561 tatgcaaagc cgggcatgac aaccaaacag ttagacgagt ttggaggaca gttgttgaag
     1621 gagtttggcg caaaatcggc accttacgta agctataact ttcccggttg gacatgcata
     1681 agtctcaata atgagttttg tcatggcatc ccgtccaaca atagagtgtt gcaggaaggt
     1741 gatttaataa acatagatgt ttctgctgag ctaaatggtt ttttctctga taatggtgga
     1801 tcatttgtat tgggcaatga taaaaatcaa tatcaaaatc tcgttaatgc ctcgaaagat
     1861 attctgcata aagccattca taatataaaa ggtggagtac gtatttcgga tatagggctt
     1921 ttgatagaaa cagaagcaaa aaaacgaggc tacaaagtaa tcaaaaacct gaccgggcat
     1981 ggtgttggac ataaactcca tgaagcaccg gatgagatac cgaactttcg ggacaaacat
     2041 aatactgcac ggtttcgtaa gaactctgtt gttgctatcg aaacgtttat ttcaacaaca
     2101 tcaacttatg ccgagacttt aggggatggt tggacaatga ttggaaataa aggtgggttt
     2161 atggctcagc acgaacacac aattcttgta actgatggga aaccaattat cctcacagaa
     2221 atg
//
LOCUS       DATDNM010000723         3366 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1795243, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000723 DATDNM010000000
VERSION     DATDNM010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3366
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1795243"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..1533
                     /gene="nifE"
                     /locus_tag="VI413_12195"
     CDS             196..1533
                     /gene="nifE"
                     /locus_tag="VI413_12195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005488 - binding [Evidence IEA];
                     GO_process: GO:0009399 - nitrogen fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogenase iron-molybdenum cofactor
                     biosynthesis protein NifE"
                     /protein_id="HEY6915429.1"
                     /translation="MGHILDERQNQVSIAGANERTIDCNKASLAGSVSQRACVFCGSR
                     VVLYPIADALHLIHGPIGCAAYTWDIRGSLSSGPELHRLSFSTDLQERDVIFGGEKKL
                     YDSALELIEKHNPKAAFLYSTCIVGVIGDDVERVCRQLEKEKGIPVIAVQAPGFQGSK
                     KDGYKVACESIFKLVGTKNKPYTPAKSINILGDFNLAGELWILLEYYKRMGVHVNATI
                     TGDGRVDDICNAHNAALNVVQCSGSMNYLAKMMKDEYNIPSMRVSYFGIEDMSDALYD
                     VARFFKDDDMMEKARQLVKEEFTRLMPELAWYKERLTGKKAAIYVGGAFKAISLVKAL
                     RLIGVQSVIVGSQTGTKEDYELIKQLCDEGTIIVDDSNPVELSHFVKEKQADIFIGGV
                     KERPIAHKIGLGFCDHNHERKEPLAGYEGMINFAKEIYATAMSPVWKFTRTAP"
     gene            1613..2998
                     /locus_tag="VI413_12200"
     CDS             1613..2998
                     /locus_tag="VI413_12200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogenase component 1"
                     /protein_id="HEY6915430.1"
                     /translation="MSKLTNITDETNLAPLQGLEASSPSRGSGGRSYISTRNSCKLCA
                     PLGASLVFKGIEGCVPLIHGSQGCATYIRRYMISHYKEPVDIASSNFSEETTVYGGSR
                     NFITGINNIIKQYKPSVIGIASTCLSETIGEDIPGHIRNYKESREADGSIIPAFIHAS
                     TPSYCGSHAEGFHNTVVAAVKAIAKHAQTDETLSIFPGMVSPADIRYLKELLTDFGMK
                     YVLFPDYSETLDNVYTSEYQLIPTGGTTIKEIEHIGNSKAIIEFGSTFNKGINRTKDT
                     GSTQTAGEWLQSTYFIRNNQMPLPIGIEASDKFMKTLEEISGKPMPESHSKERGRLVD
                     AYVDAHKYVFGKKALIYGEEDFVTAMAAWLKEIGVEPFWIKGADFETLREKAEDFKPD
                     FLLGNSKGYYIARELKIPLVRVGFPIHDRFGATRMHHIGYRGTQELFDRVVNALIEYK
                     QENSPIGYKYL"
     gene            3115..>3366
                     /locus_tag="VI413_12205"
     CDS             3115..>3366
                     /locus_tag="VI413_12205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen fixation protein NifB"
                     /protein_id="HEY6915431.1"
                     /translation="MEMTEERRQAHPCFNEEAKHTNARVHLPVAPKCNIQCNYCNRKY
                     DCVNESRPGVTSSVLAPFQAAEYLKDLDGRIENLAVIGIA"
BASE COUNT         1045 a          727 c          795 g          799 t
ORIGIN      
        1 ctctacatat ttgttaatgg cacgataaat gaataaccgg tatcagatta atgcaaaaaa
       61 cgctaattaa tcaaatcaca cttccgtaat aaccttctct aaatcttgat acaaatcaca
      121 gaataatcgt aataaacaaa gaggcaatag gtgctcagtt gtattatgac ttataaattt
      181 taattggaaa aggctatggg acatatatta gatgaaagac aaaatcaggt atcaatagcc
      241 ggagccaatg agcggactat agattgcaac aaggccagcc tggccggaag cgtaagccaa
      301 cgggcttgtg tattttgcgg atcgcgggtg gtactttatc caattgccga tgcgttgcac
      361 cttattcacg gaccaatcgg ttgcgctgct tacacctggg acattcgcgg ctcgttgtca
      421 tccggaccag aattgcaccg cttgagtttc agcaccgact tgcaggaacg cgacgttatt
      481 tttggaggag aaaaaaaact atacgattca gcattggaac tgatcgaaaa acataatcct
      541 aaagcggctt tcctttattc cacctgtatt gtaggagtta ttggcgatga tgtggaacgc
      601 gtttgccgcc agttggaaaa agaaaaaggc atacctgtta tagcagtaca ggctccggga
      661 ttccagggat ctaaaaaaga cggttacaaa gtggcttgcg agtcgatttt caaactcgtt
      721 ggcacaaaaa acaaaccgta caccccagcc aaaagtatca acattctagg tgactttaac
      781 cttgccggcg aactctggat actgttggaa tactataaaa gaatgggcgt acatgtaaat
      841 gccaccatca ccggcgacgg acgggtggat gatatttgca atgcacataa tgccgccctg
      901 aacgtggttc aatgctccgg ttcgatgaat tacctggcta aaatgatgaa agacgaatac
      961 aacattcctt ccatgagggt ttcgtatttt ggtattgagg acatgagcga tgcgctgtat
     1021 gatgtagccc gttttttcaa ggacgacgac atgatggaaa aagcccgtca gttggtaaaa
     1081 gaagaattta caaggttgat gccggaactg gcatggtata aagagaggct gaccggaaaa
     1141 aaggcagcca tatatgttgg aggtgcattc aaagccattt cgttggtaaa agcactgagg
     1201 ttaataggtg ttcagtccgt gattgtaggt tcgcagaccg ggacgaaaga agattacgaa
     1261 ttgataaaac agctttgcga cgaaggaacc atcatcgttg acgactcgaa tccggtggag
     1321 ctttcgcatt tcgtgaaaga aaagcaggct gatattttta tcggaggcgt aaaagagcgg
     1381 ccgattgccc acaaaatcgg gctcggattc tgcgaccaca atcacgaacg taaagaaccg
     1441 ctggccggct acgagggaat gatcaatttc gccaaagaga tttatgccac agccatgagt
     1501 cccgtttgga agtttacgag aactgccccc taaccccctg aagggggaat aagagagccc
     1561 ccatccctaa aggggaggaa gagtgattac aaccgataaa tgaaatttga ttatgagcaa
     1621 gctaacaaat ataacagacg aaactaactt agctccactt caggggttag aggcaagctc
     1681 cccctctagg gggtcggggg gccgctctta tatatccacc cgcaactcct gcaagctatg
     1741 tgctccgtta ggtgcttcgc tggtattcaa aggaattgag ggttgcgtac cgcttattca
     1801 cggcagccag ggatgtgcca cctatatccg ccgttacatg ataagccatt acaaagaacc
     1861 ggtggacatt gcgtcaagca attttagcga agaaacaacc gtatacggcg gaagccgcaa
     1921 tttcattacg ggaatcaaca atatcatcaa gcaatacaaa ccgagtgtta tcggcattgc
     1981 ttctacttgt ttgtcggaaa cgattggtga agatattccc ggacatatcc gaaattataa
     2041 agaatcccgg gaggctgatg gaagtatcat acctgctttt attcacgcct ccacccccag
     2101 ctattgcggc agccatgccg aaggtttcca taacacagtc gtggctgccg tgaaagctat
     2161 tgctaaacac gcgcaaacag atgaaacgtt gagtattttt ccaggaatgg tgtcgccagc
     2221 cgatatccgc tacctgaaag aattgctcac cgatttcgga atgaaatacg tgcttttccc
     2281 cgattacagc gaaacgcttg acaatgtgta cacttctgaa tatcagttga tacccactgg
     2341 tggcactaca ataaaagaga ttgagcatat cggcaattca aaagcgatta tcgagtttgg
     2401 ctcaacattc aacaaaggca ttaaccgtac aaaagataca ggctcaacgc aaacagccgg
     2461 cgaatggttg caatccacct attttatccg gaataaccaa atgcctttgc ctattgggat
     2521 agaagcttcg gacaagttta tgaaaacgct ggaagaaata agcggcaaac caatgcccga
     2581 gagccacagc aaagaacgtg gcagattggt agatgcttat gtggatgcac ataaatacgt
     2641 tttcggaaaa aaggcgctga tatacggtga ggaagacttt gtaacggcta tggcagcctg
     2701 gttgaaagag ataggcgttg aacctttctg gataaaagga gccgactttg aaacacttcg
     2761 cgaaaaagcg gaagacttca aacccgactt cctgcttgga aacagcaaag gttattacat
     2821 tgcccgcgaa ctcaaaatac cgttggtacg cgtaggtttt cccattcacg accgcttcgg
     2881 cgcaacacgc atgcaccaca tcggatatcg cggtacacag gaactattcg accgcgtggt
     2941 aaatgcactg atagaataca agcaagagaa ttcaccgatt gggtataagt atttataatt
     3001 agaagaccca ctaatcctcc aaatggggga cttgaagact gattaaaaaa gattgtgtta
     3061 ctgacgttct ggaaccccca tttgggggca gggggtcaca aaataaaact gattatggaa
     3121 atgaccgaag aaagaagaca agcacatcct tgtttcaacg aagaagcaaa gcataccaat
     3181 gcacgtgttc acctgccagt agctccaaaa tgcaacatac aatgtaatta ttgtaatcgg
     3241 aaatacgact gcgtaaacga aagtcgtccc ggtgtaacat cttccgtatt ggctccattt
     3301 caggccgctg aatacctgaa agatctggat ggcagaattg aaaacctggc tgtgattggc
     3361 attgca
//
LOCUS       DATDNM010000724         2229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_86313, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000724 DATDNM010000000
VERSION     DATDNM010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86313"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..982
                     /gene="argS"
                     /locus_tag="VI413_12210"
     CDS             <1..982
                     /gene="argS"
                     /locus_tag="VI413_12210"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008779257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEY6915432.1"
                     /translation="VDFDKIYYESETYLEGKSEVERGEVNKAFYRREDGSVWADLTGD
                     GLDEKLLLRADGTSVYMTQDIGTAKLRYNDYPINKMVYVVGNEQNYHFQVLAILLDKL
                     GFEWGKSLVHFSYGMVELPEGKMKSREGTVVDADDLMAEMIETARETSQELGKLDNCT
                     PEEIEAIARMVGLGSLKYFILKVDPRKNMTFNPKESIDFNGNTGPFIQYTHARIKSVL
                     RKAVDQGIDFSALNDTQLAISEKESYLIQLLTEFPTVVAQAGEEFSPALIANYIYELV
                     KEYNQFYHDFSILKEENTNLKQFRLVLSESIASVIKTGMRLLGIDVPERM"
     gene            1046..2191
                     /locus_tag="VI413_12215"
     CDS             1046..2191
                     /locus_tag="VI413_12215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915433.1"
                     /translation="MKKFYQFLLLCFVVLFVSACSTGHTAYKQGDYYKACFEAIERLR
                     SNPNSQKSQFVLTKAYPLAKKEAQREIDNAQLANGVDQYDILVYQYERMNQLANAIFH
                     CPKAYQLIPQPTEYIAELSAAKQMAAEQAYNMGIKAVEANTIEQARLGFQFFTKANEY
                     VYGYKDVIHKIEEARYYATLRVIVQRPYTSNKYQYSADFFYNNLLAEMSQNSKNRFVR
                     FFSPEEASAENMRDPHQYIYLNFEDFSVGNIRETSNTVDVKRDSVIVGTVKVEGKTYN
                     TYNTVKARLTTFRQELSSGGVLSLRIVDAQNNRELQLRNFTGQYVWATDWATFQGDDR
                     ALTNEEKKMCSQKPQVPPTHQDLFVGFTKPIYNQAVSYVRSVYNKYY"
BASE COUNT          691 a          385 c          510 g          643 t
ORIGIN      
        1 agttgatttc gacaaaatat attacgaatc agaaacatac ctcgaaggaa aatcggaagt
       61 agaaagaggt gaggtcaata aagcatttta tcgtcgcgaa gatggctcgg tttgggccga
      121 tttgaccggg gatggattgg atgaaaagtt attgttacgc gccgatggaa cttcggtgta
      181 catgacgcag gatattggta cagcgaaact tcgttataac gattacccga tcaataaaat
      241 ggtttatgtt gttggaaatg agcaaaatta tcattttcag gtactggcca ttttgttgga
      301 taaacttggt tttgaatggg ggaaaagtct ggtgcacttt tcgtatggca tggtagagtt
      361 acccgaaggt aaaatgaaaa gccgcgaagg aacagtggtt gatgctgacg atttaatggc
      421 ggaaatgatt gagactgcac gcgaaacttc acaggagctc gggaagctgg ataactgtac
      481 tccggaagaa attgaagcta ttgcccggat ggttggtttg ggctcgttga agtactttat
      541 tctgaaagtt gatccacgta agaatatgac tttcaatccg aaagagtcaa ttgactttaa
      601 tggaaatacc gggccattta tccaatatac acatgcgcga attaaatcgg ttttgcgtaa
      661 agctgttgat cagggaattg attttagtgc tttgaacgat actcaactag caatatcgga
      721 aaaagaaagc tacttgattc aattgcttac agaatttcca actgttgttg cccaggcagg
      781 cgaggagttt agtccggcgc ttattgccaa ttatatttat gagttggtga aagaatacaa
      841 tcagttctat cacgattttt ctattttgaa agaagaaaat acaaacctga aacaattcag
      901 actggtgctt tccgaatcca ttgcttcggt tattaaaact ggtatgcgtt tgcttggtat
      961 tgatgtgccg gaaagaatgt aataataatt tgtaatttaa ttacccgtca gttggcggaa
     1021 aagtttcact attcacaatt cagttatgaa aaaattctat caatttctcc tgctctgttt
     1081 tgttgtactt tttgtttctg cgtgttccac gggtcatacc gcttataaac aaggcgatta
     1141 ttacaaggct tgcttcgaag ctattgaacg gttacgctca aatccgaaca gtcagaaatc
     1201 gcagtttgtg cttacaaaag catatccatt agcaaaaaaa gaagctcagc gtgaaattga
     1261 taatgcccag ttggcaaatg gagttgatca gtatgatata ttggtttatc agtacgaacg
     1321 aatgaaccag ttggctaatg caatttttca ttgcccgaaa gcgtatcaac tgatccctca
     1381 gccaacagaa tatattgcag aattaagtgc tgcaaaacaa atggcagctg agcaagctta
     1441 caatatggga ataaaggcgg tcgaagccaa tacaatagaa caggcacgtc tgggatttca
     1501 gttctttacc aaagcgaatg agtacgttta tgggtacaaa gatgtgattc ataagattga
     1561 agaggcgcgc tattatgcta ctttgcgtgt tattgttcaa cgaccttata cgagcaataa
     1621 atatcagtat tcggccgatt ttttctataa taatttgctg gcagaaatga gccagaacag
     1681 caaaaaccgt tttgtccgtt tcttctcgcc cgaagaagct tctgctgaaa atatgcgtga
     1741 tccgcaccag tatatttatc tgaatttcga agatttctct gtaggtaata ttcgcgaaac
     1801 aagtaatact gttgatgtaa aacgcgacag tgtgattgtg ggtactgtga aggtggaagg
     1861 aaaaacctac aatacctata atacggtaaa agcaaggcta actacatttc gtcaggagct
     1921 tagttcgggt ggtgtgttga gcttgcgtat tgttgatgcg caaaacaacc gggagctaca
     1981 attgcgaaat tttaccggcc aatatgtttg ggccactgac tgggccactt ttcagggcga
     2041 tgacagagca ttgacaaatg aagaaaagaa gatgtgcagc caaaaaccgc aagttcctcc
     2101 aacgcatcag gatttgtttg taggctttac aaaaccaatc tacaatcagg cggtttctta
     2161 cgtgcggtcg gtgtataata agtattattg agaatgatag taatcataaa cagaaaacgc
     2221 ctcattagt
//
LOCUS       DATDNM010000725         2445 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2010340, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000725 DATDNM010000000
VERSION     DATDNM010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2010340"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..584)
                     /locus_tag="VI413_12220"
     CDS             complement(114..584)
                     /locus_tag="VI413_12220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArgR family transcriptional regulator"
                     /protein_id="HEY6915434.1"
                     /translation="MKNKRNRLQIISEILRSTVVGSQEELLNMLSDRQCEVTQATLSR
                     DLKLLKVAKTPLSNGAYKYILPSYNKPLPNSGSFNTLIAHGAVLSLEFSGQLAVVKTK
                     PGYASAIAWDIDNKATEQVLGTIAGDDTILVIPREGVTREDILEMMNITFSEKE"
     gene            949..>2445
                     /locus_tag="VI413_12225"
     CDS             949..>2445
                     /locus_tag="VI413_12225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015533032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HEY6915435.1"
                     /translation="MSKQGNIIIKGARVHNLKNIDVEIPRNQLVVITGLSGSGKSSLA
                     FDTLYAEGQRRYVESLSSYARQFLGRMSKPEVDFIKGIPPAIAIEQKVNTRNPRSTVG
                     TSTEIYEYIKLLYARIGKTYSPISGELVKKHEAQDVIDAAMEFADGTKFMVLTPVTPT
                     AEKSIAEQLTSLQLQGFSRVEVNGETFQIAELLRQPDKSIDKEVHLLIDRLAVEHTQT
                     AISRLTDSVETAFFEGNGVCVLKMITEAGPQLLYFSKKFEADGMQFETPTVHTFSFNS
                     PIGACPLCEGFGRVIGIDEDLVVPNKTLSIYEDAIVCWKGEIMSEWKNQLIRTATKFN
                     FPIHKPYYELTDEQRQLIWTGNQYFEGLNAFFKHLESNQYKIQYRVMLARYRGKTTCP
                     ECNGSRLKKEASYIRVDGKSISELVLLSVKSLNEFFENIQLDEQDAAIAKRLLIEINN
                     RIHFLLDVGLGYLTLNRLSNSLSGGESQRINLATSLGSSLVGSLYILDE"
BASE COUNT          792 a          498 c          454 g          701 t
ORIGIN      
        1 taagaaactc tttagcacaa cacacaacgt tcatttgtat ccttaaatat tttgaatttt
       61 tttagggcta caaaagtaag taattaagtg cgttatagca aacaatttcc ctattattcc
      121 ttctcagaaa aagtgatatt catcatctcg agaatatctt cacgggtaac accttcacga
      181 ggtatcacca aaatagtatc atctccggca attgtgccta aaacctgctc cgttgcctta
      241 ttatcaatat cccatgcaat agcacttgca tatcctggtt ttgttttcac aacagccagt
      301 tgcccggaaa attcgagact caacacagca ccatgcgcaa tcagggtatt gaatgaaccg
      361 gaattaggaa gcggcttatt ataagaaggc aaaatatact tatatgcacc attcgacaag
      421 ggcgttttgg ctactttcag taattttaaa tcacgtgaca atgtggcttg agttacttcg
      481 cactgtcgat cactaagcat gtttagtaat tcttcctggc taccgacaac agtcgaacgg
      541 agaatttcgg agataatttg taaacgattc cgtttattct tcataaatgc ataattattt
      601 agatttgacg caaaagtact acaaattttg tatatcacaa tataaaccct taattatatt
      661 ccgcaattat tctaaaataa taagttttaa ctacaaattt atctgtaaaa tgcatattta
      721 aaagaaatac atccaattga tatgcatatt atattctatt ttatgtaaga actattttcc
      781 ctccaaaata gttcttctaa gaataattaa ttgttcatta ttaattattc atttcttaag
      841 tagtatcttt gcaggtccaa tttattgatg tttttgggtt gatagttaac aaaacgaact
      901 cccaacccac tacaactaaa aaacaacaag tatgaacttt ttaaactcat gtccaaacaa
      961 ggaaatataa ttataaaagg cgccagagtt cacaacctga agaacataga tgtggaaatt
     1021 ccacgcaatc aactggtagt tattacagga ttatccggct ccggaaaatc ttcattggca
     1081 tttgacaccc tatacgctga aggtcaacgc cgttatgtag aaagcctatc gtcatatgca
     1141 cgtcagtttc tgggacgaat gagtaaaccc gaagttgatt ttatcaaggg aattccaccg
     1201 gcaattgcca ttgagcaaaa agtaaatact cggaatccac gctccaccgt tggaacttcc
     1261 actgaaattt atgaatatat aaaacttctt tatgcccgga ttggcaaaac ctactcgcca
     1321 atatccggcg aattggtcaa aaaacatgaa gcacaagatg tgattgatgc tgccatggaa
     1381 tttgccgatg gaaccaaatt catggtgctc actcccgtta cccccactgc agaaaaaagc
     1441 atcgcagaac aacttacaag cttacaactc cagggattca gccgagtaga agtgaacgga
     1501 gaaacatttc aaattgccga actattaagg cagccggata aatcgattga caaagaagtg
     1561 catttgttga ttgacagatt ggcggtagaa cacacacaaa cagccatcag ccgactgaca
     1621 gactctgtgg aaactgcatt ctttgaagga aatggagttt gtgtgctaaa aatgattact
     1681 gaagccggac cacaactgct ttatttctct aaaaaattcg aggcagatgg catgcagttc
     1741 gagacaccga ccgtccatac tttcagtttc aacagtccca ttggagcttg cccgctatgc
     1801 gaagggtttg gccgggttat aggaattgac gaagacctcg tggttcccaa taaaacgctt
     1861 tcgatttatg aggatgccat agtttgctgg aagggtgaaa taatgagcga gtggaaaaac
     1921 caactgatcc gcaccgcaac gaaattcaat tttcccattc acaaacccta ttacgagttg
     1981 accgatgaac aacgtcaact gatttggacc ggaaatcaat actttgaagg attaaatgca
     2041 tttttcaaac atttggaatc caaccagtac aaaattcaat accgggttat gttggcccgt
     2101 tatcgtggaa aaaccacctg cccggaatgc aatggcagcc ggttgaaaaa agaagcttct
     2161 tatattcggg ttgacggaaa atcaatttcg gaattggttc ttctatcggt aaaaagcctg
     2221 aatgaattct ttgaaaacat tcaattggat gaacaagatg cagccattgc caagcgtctt
     2281 ttgattgaaa taaataaccg gattcacttt ttactcgatg tcgggttggg ttatctaacc
     2341 ttgaatcgcc tttcaaattc tctttcggga ggtgaaagtc aacgcatcaa cctggccact
     2401 tcgcttggaa gcagtctggt gggatcctta tatattctgg atgaa
//
LOCUS       DATDNM010000726         2974 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2010498, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000726 DATDNM010000000
VERSION     DATDNM010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2974
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2010498"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..460)
                     /locus_tag="VI413_12230"
     CDS             complement(<1..460)
                     /locus_tag="VI413_12230"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915436.1"
                     /translation="MERIRKVQPFAIILAMLFVGAKSLALNYTISFSGTGASTTVESV
                     IVQNLTKGTTVTVPAGNVLNLTDQTNAVEQLASNNEAIRICPTPEEGRYTMSFYSRNA
                     GNTRISAYSIDGRKMAEINTNLQISDNSFQLLLPKGLYAIQVVGNGYTYTT"
     gene            complement(646..1350)
                     /locus_tag="VI413_12235"
     CDS             complement(646..1350)
                     /locus_tag="VI413_12235"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEY6915437.1"
                     /translation="MSKRAVILAGGKGTRLKPYTISLPKPLVPVGDMPILEIIIRQLA
                     KNGFDHITITVNHMADIIRAFCGDGSKWGVKVDYSLEDKPLSTMGPLKLIKDLPENFL
                     VMNGDVLTDLDFEGFYNNHVKSANVFTVSAYSRDQKVDYGVLEVGDDNKLVNFVEKPT
                     TRYNVSMGVYMANRKILDYIPENQLYGFDHLMLDLIKLHNPASVSIHSGYWLDIGRPD
                     DYEKACSDFEDNKILI"
     gene            complement(1343..2317)
                     /locus_tag="VI413_12240"
     CDS             complement(1343..2317)
                     /locus_tag="VI413_12240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009292084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent 4,6-dehydratase LegB"
                     /protein_id="HEY6915438.1"
                     /translation="MKNILVTGAGGFIGSHLAELLVENGYNVKAFVHYNSWNKWGWLD
                     ASSVKSKVEIITGDIRDYDSVFAAMQGCDTVFHLAALIGIPYSYVSPQAYIKTNIDGT
                     YNVLQSGRQLGVEKIMVTSTSETYGTAQYVPIDEKHPMVGQSPYSATKIGADQLSISY
                     FKSFDLPVKIVRPFNTYGPRQSARAIIPTVISQILNGQTSLKLGNLSPTRDLTFVKDT
                     ANGFLQIAKADGLFGEITNIGMSEEITIGNLVQLIADLIGTSVEIISDEQRIRPDKSE
                     VERLFCDNRKITANTDWRPNYTLESGLKETIEWIKNNLSYFKSDIYNV"
     gene            complement(2331..>2974)
                     /locus_tag="VI413_12245"
     CDS             complement(2331..>2974)
                     /locus_tag="VI413_12245"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6915439.1"
                     /translation="EPKKFYTTNYLSTLNMLELCRINQARMIFFSSYVYGHPQYQPID
                     ENHPIQAFNPYAQTKVICESLCEGYNRDFNVPVTIFRPFNIYGTGQNPDFLIPSIIQQ
                     ARNGKIIIKDDRPKRDYIHVEDIVNAVITAIGNAQSGLHTYNLGTGVSHSVKEIVDIV
                     RSLFNSEIDYLCTNELRPNDVMDTIADIRKIKAELNWQPTVSIHDGLKKMIKI"
BASE COUNT          912 a          606 c          502 g          954 t
ORIGIN      
        1 tggtagtata agtatatccg ttgccgacaa cctgaatagc ataaagacct ttagggagta
       61 aaagttgaaa tgaattatca ctaatttgca agtttgtatt tatttctgcc atcttcctgc
      121 catcaatact ataggcagaa atacgtgtat taccggcatt tctcgagtaa aatgacatgg
      181 tgtaccttcc ttcttctgga gttggacaaa tacgaatggc ttcattgttc gaagccagtt
      241 gttccacggc attggtctga tcagtcaaat tcaatacatt tcccgccgga acagttactg
      301 tggttccttt agtaagattc tgcacaatta cactttccac tgttgtgctg gcacctgtgc
      361 cggaaaagct aatggtataa tttaacgcaa gtgattttgc accgacaaat aacattgcaa
      421 gaattattgc aaacggttgg acttttctga ttcgctccat aggtatatta ttgtttcatt
      481 aattatttct aaatagcata attcattaac cctgcaaatg taaaaacaat ttatggaatt
      541 tacaaaaaaa aagagattat ctatccaaat attttactca ataaaaaaag ttttccacaa
      601 ttgactttta atatcaatca tggaaaactt caatagttga ttttattaaa tcaaaatttt
      661 attatcttca aaatcgctgc aagctttctc ataatcatca ggacgaccaa tatcaagcca
      721 ataacccgaa tgtatactta cacttgccgg attatggagc ttgatcaagt ccagcatcaa
      781 atgatcaaaa ccatagagtt gattttctgg aatataatca aggatttttc ggtttgccat
      841 ataaactccc atgctcacat tgtagcgggt agttggtttt tcaacaaaat tcaccaattt
      901 attatcatct ccaacttcca ataccccata atcaaccttc tggtcacgtg aatatgcaga
      961 taccgtaaat acatttgcac tcttcacatg gttgttataa aaaccttcaa aatccaaatc
     1021 cgttaagacg tcgccattca ttactaaaaa attttcaggt aaatccttaa tgagttttaa
     1081 aggccccatg gtactcaacg gcttgtcttc gagcgaataa tcaactttca ctccccattt
     1141 actaccatcg ccacaaaatg cacggataat atcggccatg tgattaaccg taatggtaat
     1201 atgatcaaaa ccgtttttgg ctaactggcg gataataatt tccaaaatgg gcatatcacc
     1261 cactggcact aagggttttg gcaaacttat cgtgtaaggt ttcaggcgtg tgcctttacc
     1321 tccggctaaa atcacagctc ttttagacat tataaatatc cgatttaaag taagacaagt
     1381 tgttttttat ccattcaatc gtttctttca agccactttc tagcgtataa tttggtctcc
     1441 agtccgtatt ggctgttatt ttacggttat cacagaaaag tctttctact tcgcttttat
     1501 ccgggcgaat gcgttgttca tcagaaataa tctcaacgct agttccaatt aaatcggcaa
     1561 taagttgaac caggtttcca atcgtaattt cctcactcat accaatgttg gtaatttctc
     1621 cgaacaaacc atcagcttta gctatttgca aaaaaccgtt agcagtgtct ttcacaaagg
     1681 tcaggtcacg tgttggactc aagttaccaa gtttcaatga cgtttgcccg ttcaatatct
     1741 gagaaatcac cgttgggata attgcacgtg ctgactgacg cggtccgtac gtattgaatg
     1801 gacgaacaat tttcactggt aaatcaaacg atttaaaata gctgattgaa agttgatctg
     1861 caccaatttt tgtagcagaa taaggcgatt gaccaaccat tggatgtttt tcatcaatcg
     1921 gcacatattg agctgttccg taagtctcgc tggttgaagt caccataatt ttttcaactc
     1981 caagctgacg acctgactgc aacacgttat aagtaccgtc aatatttgtt ttaatgtaag
     2041 cttgcggaga gacgtacgag tatggaattc caatcagagc tgccaggtga aaaacggtat
     2101 cacatccttg catagcagca aaaacagaat cataatcacg aatatcacct gtaattattt
     2161 cgaccttgct tttgacagaa ctggcatcca accaccccca tttattccat gaattataat
     2221 gaacaaatgc ttttacattg tatccatttt caactaacaa ttcagccaga tgcgagccaa
     2281 taaaaccacc ggctcctgta actaaaatat tcttcattat cttatatttt tcagatttta
     2341 atcatttttt tcaagccatc gtgaatggat acggttggtt gccagttcaa ttcagcttta
     2401 attttacgga tgtctgcaat cgtgtccatc acatcattcg ggcgaagttc attggtacaa
     2461 agatagtcga tttccgaatt gaaaagactt cgaacgatat ctacaatttc ttttacggaa
     2521 tggctgactc ctgttcctag gttgtaagta tgtaaacccg actgagcatt tccaatagca
     2581 gtgataacag cattaactat atcttccaca tgaatataat cacgcttagg tctgtcatct
     2641 ttaataataa ttttcccatt tcgtgcctgt tgaataatac ttggaatcag aaagtctgga
     2701 ttttgaccag taccatatat attaaatggc ctgaaaatgg ttactgggac attaaaatcg
     2761 cgattgtaac cctcgcacag actttcgcaa ataacttttg tttgggcata gggattaaat
     2821 gcctgtattg gatggttctc gtcaattggc tgatattggg gatgcccata aacatacgaa
     2881 ctaaaaaaaa tcattctcgc ttgattaatc ctgcacaatt ccaacatatt cagcgtgctc
     2941 aaatagttgg tggtatagaa tttttttggt tcat
//
LOCUS       DATDNM010000727         2309 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1903555, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000727 DATDNM010000000
VERSION     DATDNM010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1903555"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1336
                     /locus_tag="VI413_12250"
     CDS             <1..1336
                     /locus_tag="VI413_12250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010258817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6915440.1"
                     /translation="SPQKTQSYDFVVVGGGVAGMCAAVAAARLGCKVALIHNRPVLGG
                     NNSSDVRVHLGGSIELGQNKGLGRIIREFGHSREGNAKPADVYEDEKKLQFVLKEANV
                     TLLLNYQAVSVKKEGSKIESVIARNLETSEEICFSAPIFSDCTGDGTIGYLAGADYRM
                     GRESKAEFGEYLAPEVADKMTMGASVQWYSTNKDKEIEFPEFRHGVNFNAANCEKATM
                     GEWKWETGMNLDQVKDIERIRDYGMMVVFSNWSFLKNELKDNQKFKNRELSWVAYIAG
                     KRESRRLLGDYILKQDDIDKNVFHEDASFTTSWSIDLHTPDTANSKKFPGAEFKAQTR
                     HVRIYPYSAPYRCLYSRNVDNLFMAGRNISVTHVALGTVRVMRTTGMMGEVVGIAASL
                     CKKHNATPRLVYQLHLEELKQLMSEGVGKKEGIPNNQKFNEQEALDAPRVTQ"
     gene            1387..>2309
                     /locus_tag="VI413_12255"
     CDS             1387..>2309
                     /locus_tag="VI413_12255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEY6915441.1"
                     /translation="MKNRFLILLFITQLFASVAFARESSYCALKNDTLTIGNGLIERT
                     FLWNNGNLITHCVTDKKANQSLKNLSATPDFYLSKKVVKAENGKFSYQLVPENEIRPA
                     YLEVTVSFAMGSLRVKRVYRIYDNSPAIACDTYLRGTAENISSDRNSNLADLKNIEFT
                     EDIKTKQSSALLDQLNLDGKHWHMKAVEFFDVTDWNNNLVSERNFIAYRKNTYRGNLL
                     IAQNNENGSGFFFLKEAPCSGVQLAYSGGDFTAEAGHVAVTGLGLTVEDIDNENWTKT
                     YGCVLGVCSGSELNQLTALRSYQKNIRKLLPA"
BASE COUNT          705 a          403 c          577 g          624 t
ORIGIN      
        1 ttctcctcaa aaaacacaat cttacgattt tgtggttgta ggcggtggag tggctggtat
       61 gtgtgccgct gtggccgctg cgcgcttggg ttgtaaagtg gctctgatac ataaccgtcc
      121 ggtgcttgga ggaaataaca gctccgatgt gagggtgcat ttgggaggat ctattgagtt
      181 agggcaaaac aaaggactcg gacggattat tcgtgagttt gggcacagca gggaagggaa
      241 tgcaaaacct gctgatgttt atgaagatga aaagaaactg caatttgttc tcaaagaagc
      301 aaatgtaacg cttctgctga attaccaggc agtctcggtg aaaaaagaag gcagcaaaat
      361 tgaatcggtc attgcccgga atctggaaac cagtgaagaa atttgttttt ctgcacccat
      421 tttctcggat tgcacaggcg atggtaccat tggttacctt gccggagctg attaccggat
      481 gggaagagaa agcaaggctg aatttggtga atatttagcc cccgaagttg ctgataaaat
      541 gacaatgggt gcttcggttc aatggtattc gaccaataag gacaaagaga ttgaatttcc
      601 ggaattcagg catggggtaa actttaatgc cgcaaattgt gaaaaagcaa ccatgggtga
      661 atggaaatgg gaaacgggga tgaatctcga ccaggtgaaa gatatcgaac ggattcgcga
      721 ttacggaatg atggttgttt tttcgaactg gagttttctt aaaaatgagt tgaaagacaa
      781 tcaaaagttc aaaaaccgcg aacttagctg ggttgcatac attgccggaa aaagagagtc
      841 gcgcagattg ctgggtgatt atattttaaa gcaggatgat attgacaaaa atgtttttca
      901 tgaagatgca tcgtttacca ccagctggag tatcgactta catacgcccg ataccgcaaa
      961 ttcaaagaaa tttccgggtg ctgaatttaa agcgcaaacc aggcatgttc gcatttatcc
     1021 ctattcagcc ccttatcgtt gcttatattc ccggaatgtg gataatctgt ttatggctgg
     1081 acgaaacatt agtgttacgc atgtggcttt gggaactgtc cgcgtgatgc gaaccaccgg
     1141 tatgatgggt gaagtagtgg ggattgctgc ttcgctgtgt aaaaaacaca atgctacgcc
     1201 ccggttagtt tatcagttgc atttagaaga actgaaacag ttaatgtccg aaggcgtagg
     1261 taaaaaggaa ggtatcccga ataaccagaa gttcaatgaa caagaggctt tggatgctcc
     1321 gcgggtaacg caataatcaa agaaaaaata gaaaagaaac ctgtgttcca ataatcaaga
     1381 taacggatga agaatagatt tctaatactg ctttttatta cacaattgtt tgcttctgtg
     1441 gcttttgccc gcgaaagcag ttattgtgca ctgaaaaatg atacgctaac catcgggaat
     1501 gggcttattg aacggacttt cttgtggaat aacggcaatc tgattacaca ttgcgttacc
     1561 gataaaaagg ctaaccagag tttgaagaac ctgtcagcta cccccgattt ttatctgtca
     1621 aagaaagtgg tgaaagccga aaacgggaaa ttcagttatc aactggtacc tgaaaatgaa
     1681 attcgtccgg catatttgga ggtaacagtt tcgtttgcca tgggaagcct gagggtaaaa
     1741 cgggtttacc ggatatatga taatagtccg gcaatagctt gtgataccta tttaagagga
     1801 actgccgaaa atattagttc agaccgtaat tccaatttgg ctgatttgaa aaatattgaa
     1861 ttcaccgaag atatcaaaac aaaacaatct tcagctttgc tcgatcaatt aaatcttgac
     1921 ggaaagcatt ggcacatgaa agctgttgaa tttttcgacg taacagattg gaacaataat
     1981 ctggtatccg aaagaaattt tattgcatac cggaaaaata cttaccgtgg taatctgttg
     2041 attgcacaaa acaatgagaa cggtagcggt ttctttttcc tgaaagaggc gccatgttcg
     2101 ggtgttcagt tggcatacag tggaggtgat tttaccgctg aggcaggtca tgtggctgta
     2161 accggtttag gactaacggt tgaggatatt gataatgaaa actggacgaa aacctatggt
     2221 tgcgtattag gtgtgtgcag cggtagcgaa ctgaatcagt tgacagcatt acgttcgtat
     2281 caaaagaata ttcgtaagtt gttgcctgc
//
LOCUS       DATDNM010000728         2687 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2011210, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000728 DATDNM010000000
VERSION     DATDNM010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2687
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2011210"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1720)
                     /locus_tag="VI413_12260"
     CDS             complement(<1..1720)
                     /locus_tag="VI413_12260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002561806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6915442.1"
                     /translation="MNKTLKKIRSISIISIVFFLLPIYINGQTPVYLDETKSTNERIE
                     DALKRMTLEEKIAMCHAQSKFSTPGCPRLGIPEIWMSDGPHGVRMEFQWDSWSHAGWT
                     NDSCTVYPALSCLAATFNPALSLQYGNAIGEEARYRKKDIILGPGVNIYRTPLNGRNF
                     EYFGEDPYLTSKMVVPYIQGVQQNGVAACMKHFAINNQEKLREIINVEASDRALHEIY
                     LPAFNAGVTEGKVWAVMGSYNKFRGQHCSHHELLVNKILKGKWNFDGVLVTDWGSAHN
                     TDEAARNGLDLEMGSWTNGLTWGLSSAYDNYYLAQPFLKKIKNGELPESLLDEKVRRI
                     LLLNFRTNMDRNRPYGKKLTPEHKAISLKVAQEGIVLLKNEKKFFPIEKDRYQKIAVI
                     GENAVKQLTQGGGSSELKPQKEISPLQGMIDKYGKDHVIFSLGYASGKPNYSNELPSP
                     YNADSLAKAAVEAAKNADVVIFFGGLNKNFRQDCEGDDRKNMDLPFGQNELIAKLLEV
                     NKNLGIVIVSGNAVSMPWVNKVNGLMQSWYLGSQGGVATADIISGDANPSGKLPFSIP
                     KKLEDNG"
     gene            complement(1805..>2687)
                     /locus_tag="VI413_12265"
     CDS             complement(1805..>2687)
                     /locus_tag="VI413_12265"
                     /inference="COORDINATES: protein motif:HMM:NF014237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY6915443.1"
                     /translation="CGDYPAVFGWNIGNLETDSAYNSDSISFAKLRNYIKIVNKIKGV
                     SILTWTAHNPALDNSDNQPDKNYVRLIFQNKSAREKYITYLDKIAVFFNSLKDKDGNY
                     IPVVFQPFNEYNIPGKYWWSKDKCTLVDYKKMWAFTVDYLRNTKSINHVLYLYSIQAD
                     TAVSSFTDSYPGNNYVDLIGVSLNLNQDNDPTGKMYIQTLNKNLAIITQFAEKNNKIP
                     ALTNTGLKGIKIPDYFSNYLYPIVSQYKLSYIMFGKNAWNDEKLYFIPIPGHPASEDF
                     ASFSKNPRILTCSKISL"
BASE COUNT          734 a          553 c          515 g          885 t
ORIGIN      
        1 ccccattgtc ttcaagtttc tttggaatac tgaatggtaa ttttcctgaa ggatttgcat
       61 cgccactgat aatatcggca gtagctacgc caccttggga gccaagatac cacgactgca
      121 taagtccgtt cactttgttt acccatggca tactcacagc atttccgctc acgatgacaa
      181 tacccagatt tttatttact tccaataatt tggcaatcaa ctcattctgt ccaaatggca
      241 agtccatgtt ttttcggtca tctccttcgc aatcttgtcg aaagttctta ttcaagcccc
      301 cgaaaaagat aacaacatca gcatttttag ctgcttcaac agctgctttt gccaacgaat
      361 cagcattgta aggtgatggt aattcgttgc tgtagttcgg tttccccgaa gcgtaaccaa
      421 gactgaaaat aacgtgatct ttgccatatt tgtctatcat tccctgcaga ggcgagattt
      481 ccttctgcgg ttttagctcc gatgagccgc cgccctgggt aagctgttta accgcatttt
      541 cgccaattac cgcaattttc tgatagcgat ctttttcgat agggaagaat tttttctcgt
      601 ttttgagtaa tacaattcct tcttgtgcta ctttcagtga aatggcttta tgttcgggtg
      661 ttaatttttt gccatacgga cggtttcgat ccatatttgt ccggaaattc agaagcagga
      721 tgcgtcttac tttttcgtcg agtaaggatt caggaagttc tccgtttttt atctttttga
      781 ggaatggttg ggccagatag taattatcgt aggcagagct taaaccccag gtcaatccat
      841 ttgtccatga gcccatctcc aagtcaagac cattgcgcgc agcttcgtca gtattgtgtg
      901 ccgaacccca gtcggttacc agtacgccat caaagttcca tttgcctttc aaaattttat
      961 ttaccagcag ttcgtgatgt gagcaatgct ggcctctgaa cttgttgtag gagcccatta
     1021 cggcccatac tttcccttca gtaactcctg cgttaaaggc aggcagatat atttcgtgca
     1081 atgccctgtc gcttgcttca acattaatta tctcgcgcaa tttttcctga ttatttatgg
     1141 caaaatgttt catacatgcg gccacaccat tttgttgaac accctgaata taaggaacaa
     1201 ccatttttga tgtcagataa ggatcttcac caaaatactc aaaatttcgt ccgttcagcg
     1261 gagtccggta aatatttaca ccagggccga gaataatatc ttttttgcga tagcgggctt
     1321 cttcgccaat tgcatttcca tactgtagcg aaagtgccgg attgaatgta gccgccagac
     1381 aacttaaagc agggtaaaca gtacatgagt cgtttgtcca accggcatgt gaccagctat
     1441 cccactgaaa ctccatacgg acaccgtgcg gaccgtcgct catccaaatt tcagggatac
     1501 caagtcgtgg gcagccgggg gtactgaatt tcgattgtgc gtgacacata gcaatctttt
     1561 cttccagagt cattctttta agcgcatctt caatacgctc attagttgat tttgtctcat
     1621 ccaaatatac cggtgtttgt ccattgatat atattggaag aagaaaaaat acaatactga
     1681 ttattgagat agatcttatt ttttttaatg ttttattcat gaatgtttaa atttgacagc
     1741 gagtcatttg acttattaaa aaatggattt tgtgtgtaag taaattattc tgataaatga
     1801 aaagctacaa actgatttta gagcaagtca gaatacgggg attctttgaa aaactggcaa
     1861 agtcttcact tgccggatgc ccgggaatcg gaatgaaata aagcttttca tcattccatg
     1921 catttttccc aaacataatg tatgacagtt tgtattgtga tacaattgga tagagatagt
     1981 tagagaaata atctggtatt ttaatgccct tcaagccagt gttggttaat gcaggaattt
     2041 tattgttctt ttcggcaaac tgggtaatga tagccagatt tttattcaat gtttgtatat
     2101 acatttttcc tgtagggtca ttatcctgat tcagattcag gctaacgcca attaaatcga
     2161 cataattatt tccgggatag gaatcagtga atgaacttac agcggtgtct gcctgaatag
     2221 aatataaata cagtacatga ttgatgcttt tagtatttcg caggtagtcg acagtgaaag
     2281 cccacatttt tttataatct accaacgtgc atttgtcttt gctccaccaa tatttcccgg
     2341 ggatattata ttcattaaac ggttgaaaaa caaccgggat ataatttcca tccttgtctt
     2401 taaggctgtt gaaaaaaact gctattttat ccaggtaagt aatatatttt tcacgcgctg
     2461 atttgttttg aaaaatcaat ctgacataat ttttatccgg ctggttgtca gaattgtcta
     2521 atgccgggtt atgcgctgtc caggtcaaaa tagaaacgcc ctttatttta ttgactattt
     2581 ttatatagtt tcttaattta gcaaacgata ttgaatcaga attgtacgcg ctatccgttt
     2641 cgagatttcc gatattccac ccaaaaacag ctggataatc tccacat
//
LOCUS       DATDNM010000729         4717 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1155281, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000729 DATDNM010000000
VERSION     DATDNM010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4717
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1155281"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1372
                     /locus_tag="VI413_12270"
     CDS             <1..1372
                     /locus_tag="VI413_12270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915444.1"
                     /translation="TIEDGYLKLHWDKYKNLDIKSYIIDTYQKTVNNFYTDTLYYGAT
                     RTYNITVEKTNGDIITWGSLNIAENIAKPELKIAADNTYYITWHKSPYYNSIKYRYEF
                     HNTDDNSPAYGDYGFKNGNDTIYNASLHFSDNFYFSLYTLRKKTPENTNDYMIYPRGY
                     ISQYAGEPVNIKSYTSYTSADTLTAFDTKNVYKYFVSGETVYSDPINQGSSFGLGHLQ
                     VSTRGKFLLGKYYDSSGSGMRYFAKDLSTGKVSQMDFVDPNYTLIDNRYDKNISDNGI
                     GIFKLSTRVFLYDFINNIEIASRTFSSQLDNGISFKIASDGKHYIALINSVSMLLDVY
                     KINASNLEKMYSLESGTTSWQFNPTDPNMITTIKNKTLSVIQCEPYALIRKIEFASDE
                     VFMNIDYFNDEILTINANQFIIRSFNSGNIIKRIAKRYQQYYLYETFMLHNHHIIKNN
                     VMLKTN"
     gene            1376..2065
                     /locus_tag="VI413_12275"
     CDS             1376..2065
                     /locus_tag="VI413_12275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915445.1"
                     /translation="MNHKYIIAILLLIALSNNLTAQKTIVGFDTGFGTYEMTQNKLIL
                     ENSMKSNPLQPQSIHNFPGYLYFRPYLGVEYRYLNIGIAYTLMSTGSRYSIHDYSGEY
                     KFDAQIIGHAGGLFAEIPIYTIQRFKFLIAAEGGIIFNKMKLEETFQLNVAEQYNQQS
                     EYNLLSDNFFIKPYLKAEYKIREGLCSTFSIGYHKDIIAKNMNLESDDSGLTNFIADW
                     DGIRASIGLSF"
     gene            complement(2147..2692)
                     /locus_tag="VI413_12280"
     CDS             complement(2147..2692)
                     /locus_tag="VI413_12280"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEY6915446.1"
                     /translation="MKINHTVSSCFLVCTTILLFTLVGCGQKASTGSNKGAIEGEVVK
                     IVDGDTYDLRTGDQTIRVKMEGIDAPEKGMRFYKESKKYLHDLCLGRKVLFKPNEISK
                     FNKQIGFTYLSGGLELSHEMVRAGYAWHFKKYNSDNNLYKLELQARIAKRGIWADPNP
                     VSPQIVRKLRKVPGVNSHTLS"
     gene            complement(2706..3194)
                     /locus_tag="VI413_12285"
     CDS             complement(2706..3194)
                     /locus_tag="VI413_12285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-GCAxxG-C-C family protein"
                     /protein_id="HEY6915447.1"
                     /translation="MKENEINPRISRAIALFESGYNCSQAVFMAYADTYGIEEKLAAG
                     LSTSFGGGMGRMREVCGALSGACMLLGLEYPHNDPTDKTSKDINYKVVQRVAKAFKTE
                     MGSYICADLLTLKREPQSPESAERTQKYYDLRPCTRCVAVAADIVGNEIDKNNRDEHN
                     KK"
     gene            complement(3203..4336)
                     /locus_tag="VI413_12290"
     CDS             complement(3203..4336)
                     /locus_tag="VI413_12290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915448.1"
                     /translation="MHRLLIVISGLFLFAAVGYGRAAVDVTAQTIKIESQQEEKLYYG
                     FAAGDKITFTLEVADKNYLSEVEVLEYPGNSKFSDINVKKLNLKTIVVLRKGVYVFRF
                     KNLAPTSRVCKFKIQRTPASGISADFNPKVVWQQQVTTYKTYTKDVIVGYDTVFTQKN
                     KREVVKTELSEDIIMDKTERINSKSLIGNKNLKTIEVNLPQNEITADKTKKVVAWAYW
                     IGVGKEASEAWKKNVTIFRNIASGAANILGGGPLAGYAIGTVAALAMPSMGEDVAYWF
                     IADAKNSELFMKNDPFKDFDKGKGVAAYGKNTNKTQGTFFIGLLNDNTFQAIDTNVKI
                     SVIWETKYYEDRSYVERNIAPRYEKKTFSEPEITTSTVPVTGE"
     gene            4556..>4717
                     /locus_tag="VI413_12295"
     CDS             4556..>4717
                     /locus_tag="VI413_12295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HEY6915449.1"
                     /translation="MTKLVIFDLDGTLLNTIEDLANSVNYALEQYNFPTHPVETYRFF
                     IGNGVNKLLE"
BASE COUNT         1455 a          905 c          834 g         1523 t
ORIGIN      
        1 cacaattgaa gacggatatt taaaattaca ttgggacaaa tataaaaatc ttgatatcaa
       61 atcatatatc attgatactt accagaaaac agtaaataat ttctatacag atactctata
      121 ctatggagca acaagaacat acaatataac cgttgaaaaa acgaatgggg atattataac
      181 atgggggtct ttgaatattg ctgaaaatat tgctaaacct gaattaaaaa tagctgctga
      241 taatacgtat tatatcacct ggcataaaag tccttattat aattcaataa aatacagata
      301 cgaatttcat aatacagatg ataacagtcc ggcgtatgga gattatggat ttaaaaacgg
      361 gaatgacaca atatataacg ctagcttaca tttcagtgat aatttttatt tctcgcttta
      421 tactttgcga aagaaaactc ctgaaaatac gaatgattat atgatatatc cacgtggtta
      481 catatcgcaa tatgcaggtg aaccggttaa tataaaaagt tatacatcat atacctcggc
      541 tgacacactc acagcatttg acacaaaaaa tgtatataaa tactttgtaa gtggcgaaac
      601 agtctatagt gacccgatta atcagggcag ttcatttggg cttggacatt tgcaagtttc
      661 aacacggggg aagtttctac ttggaaaata ttatgactca agtggctcag gtatgaggta
      721 ttttgcaaaa gatttaagta cgggcaaagt ttcacaaatg gattttgtgg atccaaatta
      781 tacattaatt gataatagat atgataagaa tatatcagat aatgggattg gaattttcaa
      841 attatctaca agagtattcc tatatgactt cataaacaat attgaaatag catcaagaac
      901 cttttcttca caattagaca acggcatttc ttttaaaatt gcttctgatg gaaaacatta
      961 tatagcgtta attaattccg tgtccatgtt actcgatgtg tataaaatca atgcatcgaa
     1021 tctcgaaaaa atgtatagtc ttgaaagtgg aactacaagt tggcaattca atcctactga
     1081 cccgaatatg ataactacta ttaaaaataa aacgctttct gtgattcaat gcgaacctta
     1141 tgctttaatc agaaagattg agtttgcaag cgatgaagta tttatgaata tcgactattt
     1201 taacgacgaa atacttacaa taaatgccaa tcaatttata atcagaagtt ttaatagtgg
     1261 taatataata aaaagaattg ctaagcgata tcagcaatat tatctgtatg aaacttttat
     1321 gcttcataat caccacatca taaaaaacaa tgtgatgctt aaaaccaact aatatatgaa
     1381 tcataaatat ataattgcaa ttcttctact gatagcattg tcgaataatc ttactgctca
     1441 aaaaacaatt gttggttttg atacaggttt tggaacctat gaaatgactc agaataagct
     1501 tattctggaa aactcaatga aatcaaatcc tttacaacct cagagtattc ataatttccc
     1561 gggatatttg tatttcagac cttatttagg ggttgagtat cggtatctta atataggaat
     1621 cgcctacaca ctcatgtcta ccggttcacg atattcgatt catgattata gtggtgaata
     1681 taagtttgat gctcaaatta taggacatgc agggggattg tttgcagaaa taccaatata
     1741 caccattcag cggtttaaat ttctgatagc tgccgaaggt ggaataattt tcaataaaat
     1801 gaaacttgaa gaaacttttc aattaaatgt tgccgaacaa tataatcagc aaagcgaata
     1861 taacctgcta tctgataatt tctttataaa accatatcta aaagcggaat ataaaattcg
     1921 ggaaggctta tgttccacat tttctattgg ttatcataaa gatataattg caaaaaatat
     1981 gaatcttgaa agtgatgatt cgggtttaac taactttatc gcggattggg atggcatacg
     2041 agccagcatt ggattatctt tttagctttg atttagtgca cggggataat gtacgatatg
     2101 tatttgatag ggtaaatgga cttgtaattc aggtctgagt ttaaatctac gacaaggtgt
     2161 gactgtttac gccgggtact ttacgcaact ttcttacaat ttgtggcgaa acaggattag
     2221 gatccgccca gattccccgt ttggcaatgc gggcctgtaa ttccagttta tataaattgt
     2281 tgtccgaatt gtactttttg aaatgccagg cataaccagc tcgtaccatt tcatggctta
     2341 attccaaccc gccactcaaa tacgtaaatc ctatttgttt gttgaatttc gatatttcat
     2401 ttggtttgaa taacactttt cttcccaggc ataggtcatg caggtatttc tttgattcct
     2461 tgtaaaagcg cattcctttt tcaggagcat caataccttc catttttacg cgtatggttt
     2521 gatcgcctgt tctcaggtca taggtatctc catcaacaat tttgaccact tcgccctcaa
     2581 tagcaccttt attcgaacct gttgatgcct tttgcccgca accaaccaat gtaaaaagta
     2641 atatagtggt acaaactaaa aaacaggaag aaacggtgtg attaattttc attgatattg
     2701 atatcttatt tcttgttatg ctcatcgcgg ttattcttgt ctatctcatt cccaacaata
     2761 tccgcagcta ccgccacaca acgggtacag ggacgaagat cgtaatactt ttgagttctt
     2821 tctgccgatt cgggcgattg cggttcacgt ttcagggtta gcaagtcggc acaaatatag
     2881 gatcccattt ccgttttaaa tgctttggct acccgctgca ccactttgta gtttatgtct
     2941 ttggaagtct tgtcggtagg gtcgttatgt ggatattcaa gccccagcaa catacaggca
     3001 ccactcaatg caccacatac ttcgcgcatc cttcccatgc cgccaccaaa cgaagtagaa
     3061 aggccggcag ccagcttttc ttctattcca tacgtatcgg catacgccat aaaaactgcc
     3121 tgggaacagt tgtagccgct ttcgaacagt gctatagcac gggaaatccg cggatttatt
     3181 tcgttttctt tcataacagt tattattctc cggttacagg aacagtgctg gtggttattt
     3241 cgggctcgct aaaggttttc ttttcgtaac gtggagcaat attcctttcg acgtatgatc
     3301 tgtcctcata atactttgtt tcccatatga cggatatttt tacgttggta tcaattgcct
     3361 gaaacgtatt atcgttgaga aggccaatga aaaatgtacc ctgtgttttg ttcgtgttct
     3421 taccgtaagc tgccacacct ttccctttat caaaatcttt aaaagggtcg tttttcataa
     3481 acaattcgga atttttagca tcagcaataa accagtaagc cacatcttca cccatggaag
     3541 gcattgccag cgcagccact gtaccaatag catatccggc caatggcccg ccacccagta
     3601 tgttggcagc tcccgaagca atgttccgga aaatggttac attctttttc caggcttcac
     3661 ttgcctcttt ccccactcct atccaataag cccacgccac taccttcttc gttttatctg
     3721 ccgtaatttc gttttggggc aaattgactt caatcgtttt cagattctta ttgccaatga
     3781 gacttttgga attaatccgc tccgttttat ccataatgat gtcctcggat aattcggttt
     3841 ttaccacttc ccttttattt ttctgggtaa acacagtatc ataacccaca attacatcct
     3901 ttgtataggt tttgtaggta gttacctgtt gttgccagac tactttcgga ttgaaatctg
     3961 cactgatacc actagccggt gtacgttgaa ttttgaattt gcaaacccgg cttgtggggg
     4021 ctaaattctt aaaccggaat acataaactc ctttccggag aacaacaatg gttttcagat
     4081 tcagcttttt gacattgata tccgaaaact tggaatttcc cggatattcc aaaacctcca
     4141 cttcgctcag gtaatttttg tcggcaacct caagtgtgaa tgtaatttta tcgccagcag
     4201 caaatccgta atacagtttt tcttcctgtt gtgattctat ctttatggtt tgcgctgtta
     4261 cgtcaaccgc tgcgcgtcca taaccaacgg ctgcgaaaag aaacagaccg gagattacta
     4321 tcaataatct atgcatatct tttatttaat agattgaaat acatcgcggt acttacgatt
     4381 atcgggggtg gttttatttt gaagcgcaaa ggtagatgtt taagatacaa tatgcaaagg
     4441 ttacgatgag ttttcttttt gtagttctat tcaacttgtg gcattgcata ttaaattata
     4501 cttttgtgat tctaaaaaca agttcttttt caggatattt aattgtaacg caacaatgac
     4561 taaactcgtt atattcgacc tcgacggaac actcctcaat acgatcgaag acctcgccaa
     4621 cagtgtaaac tatgcactgg aacaatacaa ttttcctacc cacccggttg aaacttaccg
     4681 cttttttatc gggaatggag taaacaaatt actggaa
//
LOCUS       DATDNM010000730         2140 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_195134, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000730 DATDNM010000000
VERSION     DATDNM010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195134"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..455
                     /locus_tag="VI413_12300"
     CDS             <1..455
                     /locus_tag="VI413_12300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HEY6915450.1"
                     /translation="FEWKVSKGANSGVFYLAQEFPGKPIYESSPEYQVLDNANHPDAR
                     LGKNGNRQSASLYDLVPAVPQNSKPYDEWNTASIKVYKGTVIHSQNGKKVVEYRLWTA
                     DWKKMVADSKFKNWENFLNAGGANQEGYIGLQDHGNDVWFRNIKIRCQ"
     gene            951..1943
                     /locus_tag="VI413_12305"
     CDS             951..1943
                     /locus_tag="VI413_12305"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016717 - oxidoreductase activity, acting
                     on paired donors, with oxidation of a pair of donors
                     resulting in the reduction of molecular oxygen to two
                     molecules of water [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEY6915451.1"
                     /translation="MENINDEWSNWTSIIRPYAQPNPVKSWWQVINSFVPYLLLWGPM
                     VYSLKYSYWLTLALSILAAGFLVRIFIIFHDCGHKSFFKSKKLNNIVGIIAGGFAFTP
                     YHKWHYEHLVHHRTVGNLDKRGMGDVMVYTVEEFKNSSKKQQLFYRIYRNPVVMILIV
                     PLFLFTIVNRFPNKKLTKRINVYVHLTTLILTIIITIVSLLIGFKTFILIQIPVLFFS
                     SIFGVWLFYVQHQYKDVVWERTEKWDYRTIAMNGASYLKYPKILQWFSGNIGFHHIHH
                     LSSKIPNYNLEKCLLENKIFQKEYLTFLSSFQCLKYKLWDEEKHKLVSFKEAII"
BASE COUNT          731 a          363 c          383 g          663 t
ORIGIN      
        1 cgtttgaatg gaaggtttca aaaggggcca atagcggtgt tttctatctg gcacaggaat
       61 tcccgggtaa acctatttat gagtcttcgc cagaatatca ggttctggat aatgcaaacc
      121 accccgatgc ccgtttaggc aaaaatggta accggcagtc agcatcactt tacgacctgg
      181 ttcctgctgt gccacaaaat tcaaaaccct acgacgaatg gaatactgcc tcaattaaag
      241 tatacaaggg aactgtgatt cactcgcaaa atggtaaaaa ggttgtagag tatcgcttgt
      301 ggactgctga ctggaaaaaa atggttgccg acagcaagtt caaaaattgg gaaaacttcc
      361 tgaatgccgg tggcgccaat caggaaggat acataggatt acaggatcat ggaaatgacg
      421 tttggttcag aaatatcaaa ataagatgcc aataacacaa aatttacacc tccaaatggg
      481 gaaattttag aactttttac aattttcacc tgcgtatttt atcaacacta aattaacgtg
      541 agttcgacat aagaaaagat cataactcat tattaaactt cgatataaat aaaataatgg
      601 tgttggttgt aggtaaaatg cttactacta agggtatttg ataaaaaaaa tcatactttc
      661 agaaacactt taccccttaa tagaaaatta attcagacat aagaagccct tatactattc
      721 tgaaatagca ttttatggct aaaacaggta gaaatcttat atcgaactca cactaaatta
      781 agtacattta cgttatcaac attatcgtta ttaataacgt tttacagata agctaagcag
      841 atgcatgcgg attttaggtg caatggtgca gtactttttt taatataact tctcatttaa
      901 ttttgatatt acgatattaa ttttgttttc acctcaaaat caataaagaa atggaaaata
      961 taaatgatga atggtcgaat tggacttcaa ttatcagacc atatgctcaa cccaatccag
     1021 ttaaaagttg gtggcaggta atcaattctt ttgtcccgta cctgctatta tggggaccta
     1081 tggtttattc tttaaaatac tcgtactggt taacattggc tttatcaatt cttgcagcag
     1141 ggttcctggt gagaattttc attatctttc acgactgtgg gcataaatcg tttttcaaat
     1201 cgaaaaagct gaacaatatt gttggcataa ttgctggggg atttgctttt acaccctacc
     1261 ataaatggca ttatgaacat ctggtacacc atcgaacagt gggaaatctg gataaacgtg
     1321 gtatgggaga tgttatggtc tatactgttg aagaatttaa aaacagttcg aaaaaacagc
     1381 aactttttta tcgcatatac cgaaatccgg ttgttatgat attaattgtt cctttatttt
     1441 tgtttacaat cgtcaatcgt ttcccgaata aaaaactaac taaacgaata aatgtatatg
     1501 tacatttgac aacccttatc ttgacaatta tcataaccat tgtttctcta ttaattggct
     1561 ttaaaacctt tatacttatc cagattccgg tattgttttt ttcgtcaatt tttggagtat
     1621 ggctttttta tgtccagcat cagtataaag acgtggtgtg ggaacgtacc gaaaaatggg
     1681 attatagaac cattgccatg aatggagcat cctatttgaa atatccaaaa attctgcaat
     1741 ggttttccgg gaatatcggg tttcatcata ttcaccactt aagttctaag atacccaatt
     1801 ataacttaga gaaatgcttg cttgaaaata agattttcca aaaagaatac cttacttttc
     1861 tttcgagctt tcaatgcctg aagtataagc tatgggacga agaaaaacac aagttggtta
     1921 gtttcaaaga agcaatcata taaaagagct gtccaccgcc ggcgcagatt tgaaaccgtg
     1981 caatacaaaa agaaataaac attttatttt aattgaaaat gtcacaggtc acagactttc
     2041 gccagcagtt ggtaagttgt cagaatcaga atttacagaa ttatagaatt tacagaataa
     2101 gaaaaaatag aataaaatgc cttgtcaatg gaaagagaca
//
LOCUS       DATDNM010000731         3064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_515146, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000731 DATDNM010000000
VERSION     DATDNM010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3064
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515146"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..270)
                     /locus_tag="VI413_12310"
     CDS             complement(<1..270)
                     /locus_tag="VI413_12310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915452.1"
                     /translation="MNLQTINRIVATAFTFIITVFALVSQTVTPWLTSGDKTRLLQQQ
                     STFSFGANTGAASVVVTVNPANNYQAIDGFGFCMTEGSAEVISSMA"
     gene            complement(457..>3064)
                     /locus_tag="VI413_12315"
     CDS             complement(457..>3064)
                     /locus_tag="VI413_12315"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEY6915453.1"
                     /translation="NSSIYTTPILYSDANGEIKLEVGYTTGGYGYLGVMKIEEYSAPF
                     VNVTGIAVSGNDISINAGTTQMAAVVFPANASVTDVNWSVNDQSIATISSTGILTALK
                     NGIVTVTAVTKEPNSTVSGSAQIAISNQQTRVPVTLKIIDETKTITNGTGTNAGTNVI
                     AAISAELKALNPRSPNPTDWWYPMYADATYSPKGIFTNNATDYTWQTTLYATPGTYTW
                     TPYLKSSGWTYLNNTYTYSTTPAITFTVNDDGTITGKTELVIPNVKYKIRLKVIDKSK
                     GLLSSSTVYPNNNVVAWISGGLNTTTSWFYGFYSGDTMYPNGELIKNDTAWVWQATFD
                     APPGNYQWNPNMRSLGTSAANPVTINGNVPNVSWVGSNLSFSVSSAGILSGDTVLLMK
                     EDPLNPVLRTYLTLNVDMKGVVVDPAGVYVTGTFNGWSNTATQMTDTDGDGIYTKKIE
                     VTKSNTPYEYKFINGTSWSNVEVVFGECEFRSNRFMVVDTGSVEVPVVAFGYCGPIPA
                     EITKIKVACVGSSTTQGAGTSSQLYKSWPIQIRADLGNSFYTENLGVSGTTLQSITGQ
                     AWKETPQYGFSKLLNPDIVLMALGGNDSKLFNWDPNRFRADYLSFIAEFKALPSHPEV
                     YMLMPGKIRPNSYGLNDSVMINYELPIVREISKTYMIPVIDYNTVTSPAATAPLFPDG
                     VHGNDDGAKLIADKIAQVLLTPKPVISQETGMSYSANTYYEFRWYCNGTLIDNSNVET
                     LAATQSGTYNVAVKISPNEDHILVSKPFVVSVANGETVRLTTKVLSTGIDNLVQNRSN
                     IFLDSDNKQLIVEKAEKSKLMIYSVSGLLLKNCDVNSSYFVLDVNDLYKGVYLCKIET
                     KSKIITSKFVVE"
BASE COUNT          925 a          620 c          524 g          995 t
ORIGIN      
        1 agccattgaa ctgataacct ccgcacttcc ttcggtcatg caaaaaccaa aaccgtcgat
       61 tgcctgatag ttgtttgcgg gattaactgt aacaacaacg ctcgccgcac ctgtattggc
      121 tccaaaacta aacgtacttt gctgttgaag caaccttgtt ttatctccgc tggtcagcca
      181 tggagtaaca gtttgtgaga caagtgcaaa tacggttata ataaaggtaa aagctgtagc
      241 tacaattcta ttaattgttt gtaaattcat gattaggata attcgggttt gttattgccg
      301 gtttatacgg taaaagtaat ttataaaatt ttattttgtc ctgaaattta aaccaggttt
      361 acaaatgaat atcattttaa ctttgcacaa aggcaagtgg tattaattca aaaaaaataa
      421 gcgtgcccaa gtaacgggca cgctttactg gaagtattat tcaactacga atttggatgt
      481 tattatcttt gatttggttt caatcttaca taaataaaca cctttatata agtcgtttac
      541 gtctagtaca aaataactgc tattcacatc acaatttttc agcaacaaac cgctgacaga
      601 ataaatcata agctttgatt tttcagcttt ctcaacaatt aattgtttat tatccgaatc
      661 taaaaatata ttcgagcgat tttgtactaa attatcgatt ccagtggata aaactttagt
      721 cgttaatcta acggtttcac cattagcaac tgaaactacg aatggtttcg acactaaaat
      781 gtggtcttcg ttcggcgata ttttcacagc tacattatac gttccacttt gtgtagcagc
      841 taacgtttct acattcgaat tatcaatcaa agttccatta cagtaccaac ggaattcata
      901 atatgtattt gcggagtaac tcatgcctgt ttcctgagaa ataaccggct ttggcgtaag
      961 aagcacctga gcaattttat cagctattaa tttagctcca tcatcattgc catgaactcc
     1021 atccggaaat aacggagccg ttgctgcagg cgatgtaacc gtattataat ctataaccgg
     1081 aatcatataa gttttggaga tttccctgac gattggtaat tcataattta tcattactga
     1141 atcattcaaa ccataagaat tcggacgaat tttacccggc atcaacatat aaacttcggg
     1201 gtgcgatggc aaggctttga attcggcaat aaaacttaaa taatcggctc tgaatctgtt
     1261 gggatcccag ttaaatagtt ttgaatcgtt tccaccaaga gccatcaaaa caatatccgg
     1321 attcaaaagc ttactaaatc catattgagg cgtttctttc catgcctgac ccgtaatgct
     1381 ttgcagtgtt gttcctgaaa cacccaaatt ttcggtataa aaagaatttc ctaaatcagc
     1441 acgaatctga atcggccatg atttataaag ttggctgctc gttcctgcac cttgagtagt
     1501 acttgaacca acacatgcta cttttatttt tgtgatttct gccggaattg ggccgcaata
     1561 tccgaatgct acaacaggga cttcaactga acctgtatca acaaccataa atcggttgga
     1621 gcggaattca cactctccaa aaacaacttc cacattgctc cacgacgttc catttataaa
     1681 cttatattca taaggcgtat tgcttttggt cacttctatt ttttttgtgt agataccatc
     1741 gccatcagtg tcggtcattt gtgtagcggt attgctccaa ccattaaaag ttccggttac
     1801 ataaactcct gccgggtcaa ctacaactcc tttcatatct acatttagtg tcaaataagt
     1861 ccttaacaca gggtttaacg gatcttcttt cattagtaaa acagtatcac cggatagtat
     1921 acctgctgaa ctaactgaga aagaaagatt tgaacctacc catgaaacat tcgggacatt
     1981 tccattaatt gttaccggat ttgcagctga tgtgccaagt gatcgcatat ttggattcca
     2041 ctgataattt cccggagggg catcaaaagt agcttgccag acccacgccg tatcattctt
     2101 aattaattct ccattcggat acattgtatc tccactataa aagccataaa accatgaagt
     2161 tgtagtattc aacccgccac tgatccatgc aaccacatta ttattcggat atactgttga
     2221 acttgacaaa agcccttttg atttatcaat cactttcaat cgaatcttgt attttacatt
     2281 cggaattacc aattctgttt ttccggtaat cgttccatca tcattcactg taaatgtaat
     2341 ggcaggagtt gttgaataag tataggtatt attcaaataa gtccaaccag aagacttcag
     2401 ataaggtgtc catgtataag ttccgggcgt agcatacaat gtcgtctgcc atgtataatc
     2461 agtggcatta tttgtaaaaa ttcctttggg agaataagtt gcatcagcat acataggata
     2521 ccaccaatct gtaggattcg gacttcgtgg attcagtgct tttaattccg cactgatagc
     2581 agcaattaca tttgttccgg catttgtacc tgttccattt gtaatggttt ttgtttcatc
     2641 aattattttc aatgttacag gaactctcgt ttgctgattt gaaatagcaa tttgtgcgct
     2701 acccgaaaca gttgagtttg gttcttttgt tacggctgta acggttacaa taccattttt
     2761 taatgcagta agtattccgg tagaagaaat tgtagctata ctttgatcat taaccgacca
     2821 atttacatct gttacagatg catttgcagg aaaaacaact gcagccattt gagttgtacc
     2881 cgcatttatt gagatatcat tacctgaaac tgcaattcct gttacattaa cgaatggagc
     2941 tgaatactct tctattttca ttacacccag atagccataa cctccggtag tatatccgac
     3001 ttccaattta atctcaccat ttgcatctga atataaaata ggagttgtat aaatgctact
     3061 gtta
//
LOCUS       DATDNM010000732         3266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1690292, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000732 DATDNM010000000
VERSION     DATDNM010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3266
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1690292"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1876
                     /locus_tag="VI413_12320"
     CDS             <1..1876
                     /locus_tag="VI413_12320"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6915454.1"
                     /translation="APIMPVKYADGKWGMPFLDGETAQIGVTGDKFNNVPNPVAMLGY
                     NIEKNQNVTLFGTVSAEYKIYKDLKFNSNFGATFDSGKGYTYTPNEENWFSQNPKPDT
                     EFTNKYYSTLQQRRSNFYIWNWDNYLTYNKDFGNHTLSAVLGITRSTSRTTEDLSATR
                     YNVPPQSNYWSLNLSKNDDKSAPGTLISNTSQTPLVNVGYFGRVDYDYNNKYLLTASL
                     RRDGISDFQGTNKWGLFPAVSGGWVISSENFFEPLNSVVDYVKIRGGYGEIGNGNACP
                     SVNQVLFQNGSTYPFGLGETIYPGSYVPYAVDPNLTWETTIEFGGGIDFRLFRQRLSG
                     SIDLYIRKTDNVILPVKLPTVLSPDPVFLNAGAVQNSGLEMILNWEDKIGKDITYRVG
                     ANFALNKNSITDIYSGYFDKLTGGDLGNGQYTKEIHKGDPIGSFYVYQTTGYNVDGGF
                     TYSTNRINAGSYIPKYTYGFNLGFDYKNFDISTDWYGVGGSKVFNGKKAQRWGGENVE
                     RSELVNFWIPSAPSQTAKNPRPFSDTPLASTYYIEDGSFLRINNITIGYTMPKIVKQI
                     NKLRVFVTATNPFIITKYSGFSPELSGSDNGNPLTTAGIELDAYPTNRTLSIGISIGI
                     "
     gene            1889..>3266
                     /locus_tag="VI413_12325"
     CDS             1889..>3266
                     /locus_tag="VI413_12325"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6915455.1"
                     /translation="MKNSKIIIILALCTFVLNACESDLNVLPKDKISKEDFLSNPKYA
                     PEVVNSAYNQMLNFEMYSFAWIGMTSITSDDADKGSSDGDAGTDKDKLDKLAFDQTLR
                     SFNDIWKQRYAGIYRCNEGIYYLGQVNLEAGLKARYIGELKFLRAMFYFDLVRCFGGV
                     PIIADKIDFKNEELVNQVVYTRKTAEETYTQIEKDLNDAIIALPAKYGSADVGRATKG
                     AAQGLLSKVYLYEKKWNEAFSMSGNVIDSKQYSLLANYADVWREVGENGSESLFEIQA
                     TLGKGVQGYTDVQSGRGSPDHGWGFNTPTTNLVNAYETGDKRKDATIMFTGQVLWDGF
                     QTPTSGWTNPRYNYKAYQSRTAESWDDNKGETAKNVRLLKYSDVMLIRAESAFQIGNT
                     TEALSQINKIRTRAGLDTLTTVTLDQIYKERRLEMAMEHDRWFDIVRTGQASTAMTAV
                     GQVFIIGKH"
BASE COUNT         1068 a          602 c          701 g          895 t
ORIGIN      
        1 ggcacctata atgcctgtaa aatatgctga tggtaaatgg ggaatgcctt ttttagatgg
       61 cgaaacagca cagattggtg taaccggtga caagttcaac aacgttccaa accctgtggc
      121 tatgcttggt tacaatattg agaaaaatca gaatgtaacc ttatttggaa ccgtcagtgc
      181 agaatataaa atatataaag acctgaaatt taactccaat tttggagcta cctttgattc
      241 gggcaaaggt tatacctaca caccaaatga agaaaactgg tttagccaga acccaaaacc
      301 agacactgag ttcactaaca aatactacag tacgctgcaa caacgcagaa gtaattttta
      361 tatatggaac tgggataatt acctgactta taacaaagat tttggtaatc ataccttatc
      421 tgctgtactt ggtatcaccc gttctacttc gcgtacaacc gaagatttat cggcaacacg
      481 ttacaacgta cctccacaat caaactattg gagcctgaat ctctcaaaaa acgacgataa
      541 atctgctccc ggcacattga tttcaaatac cagccaaact ccgttggtaa acgtaggata
      601 ctttggtagg gtcgattatg attataacaa taagtactta ctgacagctt ctttgcgtcg
      661 tgatggtatc agtgattttc agggcaccaa taaatggggg ctgttccccg cagtttcggg
      721 cggttgggta attagcagcg agaatttctt tgaaccactg aactcagtag ttgattatgt
      781 gaaaataaga ggtggttatg gcgaaattgg taacggtaat gcctgtccat cagtgaatca
      841 ggtgttgttt caaaatggtt caacctatcc atttggcctt ggcgaaacaa tttatcccgg
      901 ttcctatgtg ccttatgctg ttgaccctaa tttaacctgg gaaactacaa ttgagtttgg
      961 cggtggtatt gatttccgct tgttcagaca acgattatcc gggtcgatcg acctttatat
     1021 ccgaaaaacg gacaatgtaa ttttacccgt taaactgcca acggtattat ctcctgatcc
     1081 ggtgttttta aatgctggag ctgttcaaaa cagtggtctt gagatgattt taaactggga
     1141 ggataaaatt gggaaagaca taacttatcg ggttggtgcc aactttgcgc tgaataaaaa
     1201 ttcaattacg gatatatata gcggctattt cgataagtta accggtggcg atttaggaaa
     1261 tggccaatat actaaagaga tacacaaagg tgatccaata ggctcattct atgtatatca
     1321 aacaacaggt tacaatgtcg atggaggttt tacgtattcg acaaaccgaa ttaacgccgg
     1381 ctcatacatt ccaaaatata cctatggttt taatcttggc tttgactaca aaaattttga
     1441 tatttcaacc gattggtacg gagtaggtgg aagcaaggta tttaatggaa aaaaagcaca
     1501 acgatggggt ggcgaaaacg ttgaacgcag cgaactggtt aacttttgga taccatcggc
     1561 gccaagccag acagctaaaa acccgagacc tttttcagat actccgcttg cctcgaccta
     1621 ctatattgaa gatggttctt tcttaagaat caataatata acaattggat atacaatgcc
     1681 aaaaatagta aagcagatta ataaattaag ggttttcgtt acggcaacaa atccattcat
     1741 aataacgaaa tactcaggat tttctcctga attatcgggg tctgacaatg gaaatccatt
     1801 gacaacagca ggtatcgaac tggatgctta tccaacgaac agaacattat caatcggaat
     1861 tagtattggc atttaaaatt aagtaacgat gaaaaacagt aagataatca taatcctggc
     1921 tctttgcaca ttcgtgttaa atgcctgtga aagcgactta aatgttctgc cgaaagataa
     1981 aatttcgaaa gaggattttt tatccaatcc aaaatatgct ccagaagttg taaattctgc
     2041 ttataatcaa atgctgaatt ttgaaatgta ttcatttgca tggatcggaa tgacaagtat
     2101 tacgtctgat gatgcagaca aaggctcgtc tgatggcgat gctggaacgg ataaagataa
     2161 actggacaaa ctggcattcg accaaacatt gcgctcgttc aacgatattt ggaaacaacg
     2221 ctatgcaggt atttaccgct gcaacgaagg tatttattac ctcggacaag taaatttaga
     2281 ggccggatta aaggcacgat acattggcga attgaagttc cttcgagcca tgttttactt
     2341 cgatttggtt cgttgttttg gaggagtacc tattattgca gataaaattg atttcaaaaa
     2401 cgaagaattg gttaatcagg tggtgtacac ccgcaaaacc gcagaagaaa cttatactca
     2461 gattgagaaa gacttgaatg atgcaattat tgcgctaccg gcgaaatatg gaagtgcaga
     2521 tgtcggccgt gccacaaaag gtgcagcaca aggacttttg tcaaaagtgt atttgtatga
     2581 aaaaaaatgg aatgaggcat tttcgatgtc cggaaatgtg atagatagca aacaatacag
     2641 cttattagca aattatgccg atgtttggcg ggaagtcggt gaaaatggtt ccgaatctct
     2701 ttttgaaatt caggcaactc ttgggaaagg cgtacaaggt tataccgatg ttcagagcgg
     2761 ccgtggttcg cccgatcatg gatggggttt caatacacca actacaaatt tagtcaacgc
     2821 atacgaaact ggtgataaac ggaaagatgc aaccatcatg tttacaggtc aagttttgtg
     2881 ggatggtttc caaacaccaa ccagtggctg gacaaatccc cgctacaatt acaaagcgta
     2941 ccaaagcagg actgcggaat cgtgggatga caataaagga gaaacagcca aaaacgtcag
     3001 gttgcttaaa tacagtgatg taatgctgat aagagctgaa tctgctttcc agattggtaa
     3061 tacaacagaa gcattaagtc aaattaataa aatcaggaca agagccggat tggacacttt
     3121 gacaactgta actctggatc aaatatacaa agaacgccga ttggaaatgg caatggaaca
     3181 tgatcgttgg ttcgatattg ttcgaaccgg tcaggcatca accgcaatga cagctgtagg
     3241 acaagtattt ataattggaa aacatg
//
LOCUS       DATDNM010000733         3930 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_302207, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000733 DATDNM010000000
VERSION     DATDNM010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3930
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302207"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VI413_12330"
     CDS             complement(<1..297)
                     /locus_tag="VI413_12330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915456.1"
                     /translation="MTKLYSGQAFAAVRNGNFRYFLGYRFLMTMATLMQSVIVSWHMY
                     FLTHNVVWLGMIGLVEVIPQISVSLFAGHYVDLWDRKKIVRNTTVLLLLGSAILT"
     gene            complement(429..3821)
                     /locus_tag="VI413_12335"
     CDS             complement(429..3821)
                     /locus_tag="VI413_12335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915457.1"
                     /translation="MNNFFIGNNPVIAGKQEVEGQFVLIDDEKYYQIKNYDAMQPFFI
                     SLASDSNHWMYISSTGGLTAGRKNPDTALFPYYTDDKINESAEITGSKTILHVSKGGK
                     IYLWEPFSDRNKGVYKLERSIAKSTIGNKLIFTEKNFDLGLVFSYAWMNADDFGWVKK
                     SSLTNENQETVEVYLVDGLQNILPSGIDRLTQNTFSTLVDGYKKTELIENAGLALFRM
                     ESILVDRAEPSESLRANTVWNYGLDNATFLLSSAQLNAVRSGEKAKPETEAKGVRGAI
                     FACCDLALPAASTKEWYFIAELNQDVAAVNNLVDFIQNSEDISEVLEQNIAKGTQALK
                     AIVAQADGIQQTADENGMARHFSNVLFNTMRGGIYSENYTIHTSFFNKHVQHFNRKCW
                     EKHAGFLSLLPETIEYAELDKLIHDQNDANLYRLFQEYLPLTFSRRHGDPSRPWNLFN
                     INIKDENGDKLLSYQGNWRDIFQNWEALSLSYPAYINGIIAKFLNATTADGYNPYKVT
                     NEGIEWEVIEPENPWSNIGYWGDHQIIYLLKLMEISRNHYPESLVSWLDKEMFAYANV
                     PYRLKSYEEIVANPKNSIWFDDELHVGIEKLEKTYGADAKLVLNQNGDVMLVSFTEKL
                     LATLLAKLSNFIPEAGIWMNTLRPEWNDANNALVGTGASMVTLYYMRRFVAFAVELYQ
                     GSAFKAFNISTEMAAFFDEIFNSLRDNSFLLEKGFDNQKRRMVADELGKAGENYRSKI
                     YNSFSQKKQHVSKQELLDFFDLTLEYIDQSIAVNKRVDNMYHAYNLVGFSENSVEVRH
                     LYEMLEGQVAVLSSGKLLPVEALDLLDSLRNSPLYRADQNSYILYPNKKLPLFVDKNN
                     IAPEVLKRVKLLEALVAQGDSRIITTDKKGQFHFNAGFNNAGFLREALNKLKSDSSLN
                     VTDADIAEIEAVYEQIFDHQSFTGRSGTFYKYEGLGCIYWHMVSKLLLVIGENIQSAI
                     ENCTDQTVIVGLKKHYFEVKAGIGAHKSPAVYGSFPFDPYSHTPTMAGVQQPGMTGQV
                     KEDIISRFFELGVQVENGCLKINPVILKPEEFIRITGEIACLSFSYCSVPFVYMQIGK
                     TGMEIIYADGKSEKINGYLFNPDQSQAVFNRDKKIQEIVVHL"
BASE COUNT         1143 a          909 c          718 g         1160 t
ORIGIN      
        1 cgtgagaatt gccgatccaa gaagcaaaag tacagtggtg ttacgaacta tcttttttcg
       61 gtcccacaaa tccacataat gacctgcaaa cagcgaaaca gagatttgtg gaattacttc
      121 caccaagcca atcataccca accaaaccac attatgcgtt agaaaataca tgtgccaact
      181 tacaatcacc gactgcatca gcgtagccat tgtcatcaaa aacctatagc ccagaaaata
      241 cctgaaattg ccattacgaa ccgccgcaaa agcctggccc gaatataatt ttgtcattct
      301 attcaatatt ttttatacgg ctgcaaaggt acagaataaa tttttctctg atttaccatt
      361 tatcaaaaag aggttcaacc aagtttgaat ggcgaacctc tttttaaaac acaattaact
      421 ttttgcaatt acaaatgaac aactatttcc tgaatcttct tatcgcgatt aaataccgcc
      481 tggctttgat ccggattgaa caaatatcca ttgatttttt ccgattttcc atccgcatat
      541 attatttcca tacccgtttt tccaatttgc atatatacaa aaggaacgga acaataacta
      601 aatgacaaac aggctatttc accagtgata cgaataaact cttcgggttt tagaatcact
      661 ggatttatct tcaaacaacc gttttcaacc tgtacgccca attcgaaaaa gcggctgata
      721 atgtcttcct tcacctgacc agtcatgccc ggctgctgaa cgccagccat cgttggtgta
      781 tgcgagtatg ggtcaaatgg gaacgacccg taaaccgcag gcgatttgtg cgcaccaata
      841 ccagctttta cttcaaaata atgctttttc aatccaacaa tcacggtttg gtcagtgcaa
      901 ttttcgatag cagactggat attttcgcca ataaccaaca acaatttgga aaccatatgc
      961 cagtaaatgc aacccaaacc ttcgtatttg tagaacgttc ccgaacgacc agtaaacgat
     1021 tgatgatcaa atatttgttc gtataccgct tctatctccg caatatcagc atcagtcaca
     1081 ttcaaggatg aatcgctttt cagtttattc aacgcttcgc gcaggaatcc ggcattattg
     1141 aaaccggcat tgaagtgaaa ctgtcctttc ttatcggtgg taataatgcg tgaatcgcct
     1201 tgggcaacca acgcttcgag caattttaca cgtttcagca cttcgggagc aatattattt
     1261 ttatccacga acaaaggcaa tttcttgttt ggatacaaaa tatagctatt ctgatcggca
     1321 cggtaaagcg gactgttgcg caaagaatcc agcaaatcca acgcttcaac gggcaagagt
     1381 tttcccgaac tcagaactgc cacctggcct tcaagcattt catacaaatg ccggacctca
     1441 acgctatttt ccgaaaaacc aaccaaatta taagcatgat acatattgtc gacacgttta
     1501 tttaccgcaa tggattggtc gatatattcc aacgtaaggt caaagaaatc aagcaattcc
     1561 tgcttcgaaa cgtgttgctt tttttgcgaa aatgagttgt atatttttga ccggtaattt
     1621 tctccggctt tacccaattc atccgcaacc attcttcgtt tttggttgtc aaatcctttt
     1681 tcgagtaaaa atgaattatc gcgcaaagaa ttgaaaattt catcgaaaaa tgcagccatt
     1741 tctgtagaaa tattgaaagc tttaaacgct gaaccctgat acaattccac ggcaaatgcc
     1801 acaaaacggc gcatgtaata aagcgtcacc atcgatgctc ctgttcccac caacgcgttg
     1861 ttggcatcgt tccattcggg gcgtaaagtg ttcatccaaa tacccgcttc cggaataaaa
     1921 ttgctcagtt tggccaacaa agtggcgagc aatttctctg taaaactcac caacataaca
     1981 tcgccattct gattcaaaac cagtttggca tcagctccgt aagttttttc caacttttcg
     2041 atgccaacat gcaactcatc gtcgaaccaa atggagtttt tcggatttgc cacaatttct
     2101 tcatagcttt tcaggcggta cggcacgttg gcataagcga acatctcttt gtcgagccat
     2161 gaaacaaggc tttcgggata atgattccgc gaaatttcca tcagcttgag caggtaaata
     2221 atttgatgat cgccccaata gccaatgttc gaccacggat tttccggttc gatcacttcc
     2281 cattcaatgc cttcgttggt cactttgtat ggattgtaac cgtcggccgt agtggcattc
     2341 agaaatttgg caataatccc gttgatataa gccggatagg aaagtgaaag tgcttcccag
     2401 ttttgaaaaa tatcgcgcca gttgccctga taagaaagca atttatcgcc attttcgtct
     2461 tttatattga tattgaacag gttccacgga cggctcggat cgccatgccg gcgactaaac
     2521 gtgagcggca aatactcctg aaacaaccgg tacaaatttg catcgttttg gtcatgaata
     2581 agtttatcta actccgcata ttcaatcgtt tcagggagta acgataagaa tccggcatgt
     2641 ttttcccaac attttctatt gaaatgctga acgtgtttat tgaaaaatga agtatgaatc
     2701 gtgtaatttt cgctgtatat accgccccgc atggtattga acagcacatt agaaaaatga
     2761 cgcgccattc cgttttcgtc ggcagtttgc tgaatgccat cggcttgcgc tacaatggct
     2821 ttcagagcct gcgttccctt agctatattc tgttctaaaa cttctgaaat atcttctgaa
     2881 ttctgaataa aatcaaccag attatttaca gctgcaacat cctgattcag ttcggcaata
     2941 aaataccatt cttttgtaga agcagcaggt aaagccaaat cgcagcaagc gaaaatagct
     3001 ccacgaacac ctttggcctc cgtttccggt tttgcttttt ctccgctacg tactgcattc
     3061 aactgagcag aactgagcag aaaggtcgca ttatcaagcc catagttcca gaccgtgttt
     3121 gctcgaagtg attcgcttgg ttcagctctg tccactaata tggattccat gcggaaaagt
     3181 gccaatccgg cattttcaat cagctccgtt tttttgtacc catccaccaa cgttgaaaag
     3241 gtgttttgtg tcaggcggtc gatacccgaa ggcaatatat tctgcaaacc atcaaccaga
     3301 tatacctcaa cagtttcctg attttcatta gtcagactgc tctttttcac ccacccaaaa
     3361 tcatctgcat tcatccacgc atagctgaaa accagaccca aatcaaaatt cttttcggtg
     3421 aaaatcagtt tgtttccgat agtgcttttt gctatcgagc gttctagttt gtaaacacct
     3481 ttgtttctgt cggaaaaagg ttcccataaa tagatcttac cgcctttgga tacgtgcaga
     3541 atggttttac taccggtaat ttctgccgat tcgtttattt tatcgtcggt gtaatatggg
     3601 aaaagggctg tatcaggatt tttacgaccc gccgtcagtc cgccagtact ggaaatgtac
     3661 atccaatggt tggaatcgct cgccaggctg ataaaaaacg gctgcatcgc atcgtagttt
     3721 tttatctgat aatatttctc atcatcaatc aggacaaatt gcccttccac ttcttgtttt
     3781 ccggcaataa ccggattgtt tcctataaaa aagttgttca taaagatggc ccctagcccc
     3841 taaaggggaa ctaagtaagt attaattgtt taatatttta gtgaaaaata aattctgaat
     3901 cagtaactgt cttagccccc tttaggggtt
//
LOCUS       DATDNM010000734         2761 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_302325, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000734 DATDNM010000000
VERSION     DATDNM010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302325"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..247
                     /gene="arr"
                     /locus_tag="VI413_12340"
     CDS             <1..247
                     /gene="arr"
                     /locus_tag="VI413_12340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010257556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(+)--rifampin ADP-ribosyltransferase"
                     /protein_id="HEY6915458.1"
                     /translation="LAFGEGRERIYLVEPTGAIEDDPDLTDKRFPGNPTKSYRSIHPF
                     KVVGEVTIWQGHPQEQVKAMKEHLDRLKEQGIDSLND"
     gene            287..628
                     /locus_tag="VI413_12345"
     CDS             287..628
                     /locus_tag="VI413_12345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915459.1"
                     /translation="MKEFLLLFRMDITNPEAQPTDQQMEIYMQQWMEWIDDIADNDQL
                     GEGGHHLSKQGRVIKSNNETIETPYIAENNSVAGYILVLAKNLDEATTIAKKCPILNG
                     PNTSVEIRETA"
     gene            complement(1015..2040)
                     /locus_tag="VI413_12350"
     CDS             complement(1015..2040)
                     /locus_tag="VI413_12350"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEY6915460.1"
                     /translation="MEVTKQCVGIDASKDSLEVIFKEKTSTAVKIKGSSKFDNTSAGF
                     ILFLEWCNKREKVENVVYVLEATGIYHEEVLYFLFDKGKKVSVELPQRIKYFAKSKGI
                     KTKNDMIDSGVIADYGLERELKVWQPPGKGFKSLRDLSREHNTLMGSKSEAMNRLHAA
                     IHAHNKNPRVIERLQRTIEFYTNQLDEIEKDIKTIVNADGEMCAKIKKVSTIKGVGLM
                     TVVKVIAETGGFFLFQNINQLVSYAGLDVVENQSGNHKGKTWISKKGNADLRTALYMP
                     ALSAIRSNEKMKSFNERIMQTHTYKKQGIVAVMRKLLILIYILWKKNQEFIPDYKWQQ
                     APQINFG"
BASE COUNT          803 a          556 c          506 g          896 t
ORIGIN      
        1 acttgcattt ggtgaaggac gtgaaagaat ttacctggtg gaaccaacag gggccattga
       61 agatgatccg gatctgaccg ataaaagatt ccccggcaac ccgacaaagt cttaccgttc
      121 gatacatcct tttaaagttg tgggcgaagt caccatctgg caaggacatc cgcaagaaca
      181 ggtaaaggcg atgaaagaac accttgaccg acttaaagaa caaggaattg attcgctgaa
      241 tgattaaatc aatgtaactc aattgtagaa agtaaattca taaaaaatga aagaattttt
      301 attgctcttt cgcatggaca tcaccaaccc ggaggcacag cctaccgatc agcaaatgga
      361 aatttatatg cagcaatgga tggaatggat tgatgacatt gcagacaatg accagcttgg
      421 tgaaggagga catcacttat ccaaacaggg gcgagtgata aaatcaaaca acgaaacgat
      481 tgaaacacct tacattgctg aaaataattc tgtagctggc tacatccttg ttttggccaa
      541 aaatcttgat gaagcaacaa caattgcaaa gaaatgtcct atcctgaatg gacccaatac
      601 aagcgttgaa atcagggaaa cagcgtaacc gggagagtaa acaacgcgtt ctttatactt
      661 gtaatttgat aggcaatact tttaggcaat atttttaaac ttaattcatt ggattgagtt
      721 tattaaaact ttaaacagga gtttgaatcc ttggtctaaa actgacaaca ttgatttgat
      781 tttaaagata atgggtttag gggatggatc acaaaaggac taataagata ctgtgataac
      841 ttccaaattt ttattcatca tttaattcct caatttcctt ttttatcttt gtctagcaga
      901 aagaaggctt ttggtcgatt cgttgaaccg aagtctatct agtggcggag aatctattct
      961 ccgctttttt cttttgcttt gcaaaagagc agaaagaagg cctggtcttc atcattaccc
     1021 gaagtttatc tgtggagcct gttgccattt gtaatcagga ataaattcct ggtttttctt
     1081 ccacaggatg tatatcaata tcagtaattt acgcataaca gcaacgatcc cctgcttttt
     1141 ataggtatgg gtttgcatga ttcgttcatt aaaggatttc attttttcgt tagacctgat
     1201 tgctgacagg gcgggcatat aaagggcagt gcgcagatcg gcgtttcctt tttttgatat
     1261 ccaggttttt cctttgtgat tacccgattg gttttccacc acatccaacc cggcatagct
     1321 taccaactgg ttgatgtttt gaaaaagaaa gaagccaccg gtctcggcaa tcaccttcac
     1381 tactgtcatc aggccaacac cttttatggt ggaaactttc tttatttttg cacacatctc
     1441 cccatcagca tttactatgg ttttaatatc tttttctatc tcatccagct ggttggtgta
     1501 gaactcaatg gttcgttgca ggcgttctat tacccttggg ttcttattgt gagcatgtat
     1561 ggctgcatgc agacgattca ttgcctctga tttactaccc atcagcgtat tgtgttcacg
     1621 gcttaaatcg cgtaaagatt tgaacccttt gcctggcggt tgccatactt taagttccct
     1681 ttccaatcca taatcagcta ttacaccact gtcaatcata tcgtttttgg ttttaatgcc
     1741 tttgcttttg gcaaaatatt ttatgcgctg gggaagttcc accgaaacct ttttgccttt
     1801 gtcgaagaga aaatacagca cctcttcatg atagatccct gttgcttcca gcacatatac
     1861 tacattttca accttttccc ttttgttgca ccattccaga aaaagaataa aaccggcaga
     1921 agtgttgtca aacttgctgc tgccttttat ttttacagct gtgcttgttt tctctttaaa
     1981 tataacctcc aagctgtctt tgctcgcatc tattcccacg cactgttttg ttacttccat
     2041 tttgtttaaa atttaatagt aaaggaaatt atctcacagt ctttcctctc aaatgatacg
     2101 aaatctatgc tgttagcaat agtttctcaa tactgttcag actcgaagaa aattcagtaa
     2161 tgggaagttc tcttagtaac gacatacaat tcttgttgtc ttggtttgga tctttttccc
     2221 attactgtcc ttttattatc ttacaaacgt attaatttta tatgccgcaa acataagagg
     2281 tttgggttcg ggggattgac ctggttactg agttactaag gttgagcatc aacctattgt
     2341 tgctaacccg ctcaccttaa taaccttaat aacttgaatc ggccccacgg cccccaacct
     2401 tagtaacctt agtaaagtcc tgaagtcacc ctttgcataa agatatcaga aaaaaaaatc
     2461 gctcttttaa atgttagcat gtaatttcat aaaatgctat atatctatat tatttgtaga
     2521 tattgtctaa aataaagacc atgtaaaaaa tcgctgataa attgggagca aaaagcactt
     2581 accatcatcg aattgtgtct tgccagaagc tagaagccag aagcaatagg caattggctc
     2641 cttgcccctt ccatttcttt ttacgacatt attttgttct tatcacttag acgtttactg
     2701 tatgattatt ttcttgaaga atgtgttttt accatcgtag aagttcagca tataaacacc
     2761 g
//
LOCUS       DATDNM010000735         5873 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1583168, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000735 DATDNM010000000
VERSION     DATDNM010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5873
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1583168"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            40..720
                     /locus_tag="VI413_12355"
     CDS             40..720
                     /locus_tag="VI413_12355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009136811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6915461.1"
                     /translation="MTKIKNMNLNPFKKPTVIIVDDHLIFQQGLKSIITAENIATVIG
                     EAANGKEFIEILSRNKPDLVLMDIDMPQMNGMEATQKAIELVPDIKIIALTMFGDEEY
                     YYKMINLGVKGFILKSTGITELEKAINDVMKGESYFSNELLRKIIQNFNRNSAQEQTN
                     NKDLTEREIEVLKQICLGLTTEEIAEQLNISPKTVKSHRSNLLEKTGCKNTPTLILFA
                     LKNKIIEL"
     gene            941..1432
                     /locus_tag="VI413_12360"
     CDS             941..1432
                     /locus_tag="VI413_12360"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6915462.1"
                     /translation="MKTTLLKKPTIILVDDHLIFRQGLKSLITFENLGTVIGEASDGK
                     EFIDLLSLPAPDLVFMDIDMPNINGMEATQKALELFPDMKIIVFSMFGDEEYYNKMIE
                     LGVKGFILKSSGINEVEQAIEDVMKGKTYFSNVLPRNTLNKLNLDKPQKAKDDPKIPI
                     PWW"
     gene            complement(1557..5861)
                     /locus_tag="VI413_12365"
     CDS             complement(1557..5861)
                     /locus_tag="VI413_12365"
                     /inference="COORDINATES: protein motif:HMM:NF036531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HEY6915463.1"
                     /translation="MKTDKNGLCLCPQSSNYYNRIIFFEKNKDRFYSSDFHPTYYATN
                     EADGNEKAIVSLFTDRSLYRPGQTVYFKGIGYLSNKNKQEVSYGNTYTVELYDANNQK
                     ISSKLLSANQFGSFAGEFVLPQTGLNGAYRLQVGDYSQTIWVEEYKRPTFEVVINRPK
                     AEVSFGDKVTMSGNVKAYAGYGIGGAKVKYRVVRRPHRFCWWFNEPEIEITNGAVNSN
                     ADGTFEVSFIPQKTKNEVTLYRGQFYTYSVYTDVTDPKGETQKGEQTISVGDRSLFIL
                     AEVPEKINKREKLNLEISTVTINDETINSTLKYQVYKLQDTDVYAEKLSEPIDLKEAQ
                     QVLSGSFDTKNKKLALDFNNLNSGRYKMTLTTTDSHGKEVKTEKIFVVYDTAEKRPPV
                     KSYVWLLTPKTDCEVGEKAQIIFGTSTKNSTVLYEMMQGNTVLESRWIAFSDESKTFE
                     IPFKETYGAGVTVAFTFMKDEQLFTNSVQVKRKIVEKKLTPTLSVFRNKLLPGEKAEW
                     TITIPESAKSKKMTELLVGMYDASLDAIRPHSWDFDPTYRDVIANSPHWITNLADKGN
                     DNAFINEANKDVYQFELDQLYWFGLSLDEGSYVGGRGPIKFKKGGLFSRSMSVSISEV
                     RGDDEVNGKDIADVKVEITEALQGKVSGLDVKKKDPANKEIQLRTNFNETAFFYPQLR
                     TDEKGNVKFTFTAPESLTRWNVKMLAHTQDLYFGQGEAQVVTQKDLMVQMNLPRFVRR
                     SDKLVLSANVINLTDKAQTASVQFEMIDPATEKPIKLKDAAQKTITLAANETKAMEWE
                     LTEFSAYELVTCKVVVRAGNFSDGEQKYLPVLPDKVLVTESLPLTIRGNQTRTFNFES
                     FIKNSSKVDTKNLSVEFSSNPAWYAVQALPTISTPESENALDYFTAYYANSLAAFIAN
                     SNPKIAATFDRWKKAGGSRDALLSNLQKNTELKNMLLEETPWVMAAKDETEQKRQIAL
                     LFDLNMQKNQAQQYLDKLISLQLPSGGFSWFKGMGESRYVTQEIMLNLARLNRMLGIK
                     SDIQNAMITKALFYLDLEIAHDFDDLKKYNKNYDKEMSIGNMQLFYLHLRSEYPEIPV
                     HVSAQAAVRFYTAQSEKYWTNLTLYGKAMMAVVANLNGKIQVANDILKSLKENALKTD
                     EFGMYWAKNTSGYFWNERPITVQAAIIEAFSEISKNTPDIDEMKIWLLKQKQTQRWDS
                     PMATVNAIYALLNQGSDWLSNEGTVKISIGNTILQPASTEAGTGYFKETIPTGNMRSE
                     MGKVTVSKSDKNIGWGAMYWQYYQNLDQIQGQGGPLKISKKLFVQKLTATGKTLVPIE
                     QAKLVKGDKVITRLVVTTDRNLEFVALKDLRASCFEPVNQLSGCEWKEGVCYYQTTKD
                     ASTQFFFSYLPKGTYVFEYQLWANAAGEYTSGIASVQCQYAPEFVSHTGGERIRVQ"
BASE COUNT         1769 a         1258 c          990 g         1856 t
ORIGIN      
        1 ttaatgtacc tgtaaagaaa ttctcctaaa ataatgcgtt tgacaaaaat taaaaacatg
       61 aacctaaatc ccttcaaaaa acccactgtc ataattgttg atgatcatct catttttcaa
      121 cagggtttaa aatcaattat cactgctgaa aatatagcaa cagtaatagg cgaagctgca
      181 aacggaaagg aatttatcga aattctttca cgcaacaagc ctgatttagt cctaatggat
      241 attgatatgc cgcaaatgaa cggaatggaa gcaactcaaa aagcaattga gttggtgccc
      301 gatataaaaa taattgcatt aacaatgttt ggcgatgaag agtattacta caaaatgatt
      361 aaccttggcg ttaaaggatt tatattaaaa tcaactggta ttacagaact cgaaaaagct
      421 attaacgatg tcatgaaggg tgaaagttat ttttcgaacg aattacttcg aaaaataata
      481 caaaatttca atcgtaattc tgcacaagag cagacaaata ataaagacct aacggagcgg
      541 gaaattgaag ttctcaaaca aatctgcctt ggacttacca cagaagaaat tgcagaacaa
      601 ctaaatatca gcccaaaaac cgttaaatca cacagatcaa atttactcga aaaaacgggt
      661 tgtaaaaaca cacccacact aattctcttt gctttaaaaa acaagattat agagctttaa
      721 atcagccaca taagctaacc acacacagat ctaaacatat ctcagctagg cctttaggcg
      781 gatatgaata tccgcctaaa gacacagata aaaacctact atactcttag cagattacac
      841 ctttaagctg ttgcaataag cctctgtatt tcataaattt gcatgacaaa tgaaagagcg
      901 ggaattattg atttatctaa ttaaaaacag ctgaaaaatc atgaaaacta cactattaaa
      961 aaagccgaca ataatacttg tcgacgacca cttaattttt cgccaagggt tgaaatcact
     1021 tattactttt gaaaatctgg gaactgtaat tggcgaagca tcagatggga aagaattcat
     1081 agatttactt tcgcttccag ctcccgattt ggtttttatg gatattgata tgccaaatat
     1141 caatggaatg gaagctacac aaaaagcgtt agaactattt ccggacatga aaattattgt
     1201 tttctccatg tttggagatg aagaatatta caataaaatg atcgaactcg gggtaaaagg
     1261 atttatcctg aaatcgagtg gaatcaacga ggttgaacaa gccattgaag atgtaatgaa
     1321 aggtaaaaca tatttttcga atgtgttgcc tagaaatacg ctaaacaagt tgaatcttga
     1381 caaaccacaa aaagcaaaag atgatcctaa aataccaata ccatggtggt aaaataactt
     1441 aatcaaaaaa aaacagaacc ctaaacctta acttctctta tattacattc taaaccaaac
     1501 cttaaatctg tttgtttcag tcggagttca acctaagttg actccgactt tttttattac
     1561 tgaaccctta tcctttcgcc tcctgtgtgg cttacaaatt caggtgcata ctggcattgc
     1621 acagaagcaa taccactggt gtattcacct gcagcatttg cccaaagttg gtattcaaaa
     1681 acatatgttc cttttggcaa ataggagaaa aagaattgtg tcgaagcatc tttcgttgtt
     1741 tggtaatagc acacgccttc tttccattca cacccggaaa gttggtttac tggttcgaaa
     1801 cacgacgcac gtaaatcttt cagggctaca aattccaaat tgcgatctgt agtaacaacc
     1861 aaacgcgtta taactttatc acctttcact agttttgctt gttcaattgg caccaatgtt
     1921 tttccagttg cagttaattt ctgtacaaaa agctttttcg agattttcaa tggcccccct
     1981 tgcccctgaa tctgatccag attctgataa tactgccagt acatggctcc ccaaccgata
     2041 ttcttatccg atttactcac cgtcactttg cccatttccg aacgcatatt gccagttgga
     2101 atagtctcct tgaaatatcc agtgcctgct tctgtacttg ccggttgcaa aattgtattt
     2161 ccaatactga ttttcaccgt cccttcgttt gacaaccaat cgctaccttg attaagcaat
     2221 gcataaattg catttacagt tgccattggc gaatcccaac gttgggtttg tttttgtttg
     2281 agcaaccata tcttcatttc atctatatcg ggagtatttt tagatatttc cgaaaaagcc
     2341 tcaataatag ctgcctgaac agtaattgga cgttcattcc agaaatatcc tgatgtattt
     2401 ttcgcccaat acataccaaa ttcatctgtc ttcaacgcat tttctttcag cgatttcaaa
     2461 atgtcgtttg ccacctgaat ttttccattt aggttggcta caactgccat catagctttg
     2521 ccgtacaagg taagatttgt ccagtatttt tctgattgag ctgtataaaa tctaacagct
     2581 gcctgagcag aaacatgaac cggtatttct ggatattcgg aacgaagatg caggtaaaac
     2641 aactgcatat tacctataga catttcttta tcataatttt tattgtactt cttcagatca
     2701 tcaaaatcgt gtgcaatttc aagatcgaga taaaataaag cttttgttat cattgcattt
     2761 tgaatatccg attttattcc cagcattcgg tttaaacggg caagattcag catgatttct
     2821 tgcgtaacat aacgactttc acccattcct ttaaaccacg aaaagccacc tgatggtaat
     2881 tgcaacgaaa tcagtttgtc gagatattgt tgtgcctggt ttttctgcat attgaggtcg
     2941 aataacaagg caatttgccg tttttgttcc gtttcgtctt tggctgccat tacccacgga
     3001 gtttcttcca ggagcatgtt tttcaattca gtatttttct gcaagttcga cagcaacgca
     3061 tccctgctgc caccggcttt cttccaacga tcaaaagtcg cggcaatttt cggattggaa
     3121 ttggcaataa atgctgcgag gctattggca taataagctg taaaatagtc caatgcattc
     3181 tcactctccg gcgtagaaat tgttggcaat gcttgcacag cataccacgc cggatttgat
     3241 gaaaactcta ctgataagtt tttggtatca actttcgaac tattttttat gaaactctcg
     3301 aagttgaaag tgcgggtttg gtttccacgt atcgtcaacg gcagactttc ggtcaccagc
     3361 actttgtcgg gtaatacagg taagtatttt tgctcaccat cgctgaaatt tcctgcacgt
     3421 accaccactt tgcaagtcac taactcgtat gcagaaaact cagttagctc ccactccatt
     3481 gctttggttt cattggctgc aagtgttatt gttttttgtg ctgcatcttt caacttgatt
     3541 ggcttttcag ttgccggatc aatcatttca aattgaaccg aagccgtttg tgccttatca
     3601 gtcaggttaa tgacattagc gctcagtacc aacttatcag accggcgcac aaacctcggc
     3661 aaattcattt gcaccatcaa atctttctgc gtaaccacct gtgcttcacc ctgcccaaaa
     3721 tacaaatcct gtgtatgagc aagcattttc acattccaac gagtcaagct ttcgggagca
     3781 gtaaacgtaa acttcacatt tcccttttca tcggtgcgca actgtggata gaaaaaagct
     3841 gtttcgttga agttggtgcg gagttgtatt tctttatttg ccggatcttt tttcttgaca
     3901 tccaatccac ttaccttgcc ttgcagagct tcagtaattt ctactttcac atctgcgata
     3961 tcctttccat taacctcatc atctcctctg acttccgaaa ttgaaaccga cattgatcta
     4021 ctaaacaaac cacccttttt gaattttatt ggtcctcgtc caccaacata gctaccttca
     4081 tcaagactta aaccaaacca atacaattga tccagttcaa attgataaac atctttattt
     4141 gcttcgttta taaaagcatt atcatttcct ttatcagcca ggtttgtaat ccagtgtggc
     4201 gaattcgcta ttacatcacg gtatgttgga tcaaaatccc aactgtgagg acgaatggca
     4261 tctaacgaag catcatacat tccgaccaat aattccgtca tttttttact ttttgcactt
     4321 tcaggaatcg taatagtcca ttcagccttt tcacccggaa gcagtttgtt ccggaacaca
     4381 ctcaatgttg gagtcaattt cttttcaacg attttacgct taacttgtac ggaattcgta
     4441 aagagttgtt catccttcat gaaagtaaac gccaccgtta cgcctgctcc atacgtttct
     4501 ttaaatggaa tttcaaaagt tttactttca tccgagaatg ctatccaacg gctttccagc
     4561 accgtatttc cttgcatcat ctcatacaaa acagttgaat ttttagttga agtaccaaat
     4621 attatttgcg ccttctcccc tacttcacaa tcggttttag gagtgagcag ccatacatag
     4681 cttttcacag gcgggcgttt ctcagcagta tcgtaaacta caaagatctt ctcggtctta
     4741 acttcttttc catgcgaatc agttgtggtc agggtcattt tgtacctgcc agaattcagg
     4801 ttattgaaat ctaaagctag tttcttgttt ttagtatcaa aacttcctga aagtacctgt
     4861 tgagcctctt ttaaatcaat aggttcgctt aatttctcag cataaacatc ggtatcctgc
     4921 aatttgtaaa cctgatattt caatgttgaa ttgatagttt catcattaat ggtaactgtt
     4981 gaaatttcca gattcagctt ttctctttta tttatctttt caggcacttc ggccaaaata
     5041 aacaaagatc tgtcgcccac cgaaatggtt tgttcacctt tttgggtttc tcccttgggg
     5101 tcagttacat ctgtgtaaac tgaatatgta taaaactgac cacggtataa cgtaacttca
     5161 tttttcgttt tttgagggat aaatgaaact tcaaaagttc catcggcatt tgaattcaca
     5221 gctccgttgg taatttctat ttcaggttca ttgaaccacc agcaaaaacg gtgcggccga
     5281 cgaaccaccc ggtatttcac cttcgccccg ccaatgccat atccggcata agctttcaca
     5341 ttaccgctca tcgtaacctt atcaccaaaa ctgacttcgg ctttcggacg gttaataaca
     5401 acctcaaaag ttggacgttt gtactcttca acccaaattg tttgagagta atctccaacc
     5461 tgcaaacgat aagcaccatt tagacctgtt tgcggcaaca caaactcacc ggcaaacgat
     5521 ccaaactggt ttgctgacaa cagttttgac gatatttttt gattgttggc atcatacaat
     5581 tcaaccgtgt aagtattgcc atatgaaact tcttgtttgt ttttattcga caagtatcca
     5641 attcctttga aataaactgt ctgccccgga cgatacaaag atcggtcggt gaaaagactc
     5701 acaattgctt tttcattccc gtcagcttcg ttagttgcat aatatgtcgg gtgaaagtcc
     5761 gaagagtaaa aacggtcctt atttttttca aagaaaataa tccggttgta ataattgcta
     5821 gactgaggac ataggcaaag tccatttttg tctgttttca actctttaat aaa
//
LOCUS       DATDNM010000736         5519 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2118062, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000736 DATDNM010000000
VERSION     DATDNM010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5519
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2118062"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1735
                     /locus_tag="VI413_12370"
     CDS             <1..1735
                     /locus_tag="VI413_12370"
                     /inference="COORDINATES: protein motif:HMM:NF024702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEY6915464.1"
                     /translation="NSDGMIIGSVEYESVIRPKPARVPALKNDTTIHLSAGELSGKLT
                     SLQKATITNLQLTGSIDARDFKTMRDSMPALSAIDINAVSVLAYTGTLGTAGFQNRTY
                     PAGSIPQNAFSLGENVYNSKLASIILPNSITSIGDSAFYRCINLTGNLVIPGSVTSIG
                     NSTFYRCGNLNGTLVLPNSVTAIGEYAFSQCQNLTGLILSESLTSISDGAFDGDWTLE
                     GNLTIPNSVTSIGDYAFFYCNFTGVTFPNSVTSIGVGAFGKCKMLTGNVTIPNSITAI
                     SDNTFALCARLTSVTLPNSVTSIGNSSFTMSGLSSITLSNFIISIGDWTFSMSNLTGG
                     FAIPNSLASIGHGTFSLTGITEFIVENNNPNFSAVDGVLFSKDKTRLIAYIPNKHGVY
                     TIPDFVTSIGNYAFDYCNGLTDIIIPNSVVSIGIGAFNYCAVLTSITVNSATPINLGD
                     STRVFDLVNKTNCTLYVPKDAKPLYQSANQWKDFVRIVEMLPSGNDTELSIGNQVTLY
                     PIPASEGFYIHSRTDEWNTVTIYNTCGVLLFSSKVKSQSYIDIASLHAGQYIVKILTP
                     EGVIEKRLLKK"
     gene            1931..3814
                     /locus_tag="VI413_12375"
     CDS             1931..3814
                     /locus_tag="VI413_12375"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915465.1"
                     /translation="MKKITFLGIIMLLSLFTFTAKAEINFDLTTVGGTKVMDWAAVAT
                     ENAKTQTDRWLTLTAIASGTSGKCGTATTTFDIKTGSSRSISFFLAKCDNMTISANIA
                     SGRGLIVTIDGGTNIQLDGTGACKDYVVPINKEVPCVIKVVALTSSSSWTSFFTFTYA
                     PKTPTISAFKINNTPAVIDQTAKTITLQMPYGTDISAVTPEVTIISASGYTPLGAQNF
                     TTGPIIYAVSDATTTNNYTANITAKSTPDTDKSITSLSINGTAATINEAAGTISCEFP
                     SFTGALGNWPVTFTLSGTTCSANFTSGSNYDFLANNTQTITVTAQDLSTKVYTITPTI
                     STKKNIGMLTLNGKAESYDNIMLTAFNDYYVNFLTAAATAPADINAFYANYDLIVLHS
                     NVGGTNATAVATKAMVGVKPVLNLKSFFYNSGRWAWSTTAPANAAAGIASADVQTNLQ
                     SHPIFSNVNFTGTTLSFFDNLPVTNANAIQYASDLATLSGMTSQTIATVNTTGIQMHE
                     IQDNIAAKFIMVALGSENNNYNYLNSNSVNVLKNSAAYLLNSSAKYTYPTTSLNNLNE
                     KSPIYYNNGLINNPEQKSIVIYNTAGMLIKTSTDKTIDTQSMSKGVYLVQTENMKVFK
                     FIK"
     gene            3897..5336
                     /locus_tag="VI413_12380"
     CDS             3897..5336
                     /locus_tag="VI413_12380"
                     /inference="COORDINATES: protein motif:HMM:NF019113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEY6915466.1"
                     /translation="MKKQILIATIACGLLSFTRAQTLPTKQQVLDKMTLANTYFMAKW
                     PDPTANIVTNKSRPSNLWTRGTYYEGLMQLYYLTQDATLLKYAVDWGTFHKWQPTYTG
                     TVPTRIADNQCCFQTYLELFQLDPTKTERIATAQVSIDAMVNSTKVNDWWWIDAMHMA
                     MPMFTKFGVIKNDNKYFEKMYDLYNYTKKQAKGVGLYNSADSLWYRDSVYLPPTKSPN
                     GLPVYWSRGNGWVFAALTRTLDVLPAVAPHRDEYVATFRQMAGKLIRIQRPDGFWNVN
                     LGDPNDYGGKETSGTVFFTYGLAWGINHNLLDSATYYPYVVKAWNGLIDYALHTTGNL
                     GWVQSAGSKPADGQPLSYDKMPDFEDFGLGGFLLAGSEVYKLAKVSNNSTKTNAILNT
                     DLQLSAYPNPFSESIQIRFKPASGNACLVIMNSIGQRVYTLYTESNNAISFTWNGRTN
                     SGKLLPKGLYIIQLQDGKRHQIAKIILQK"
BASE COUNT         1675 a         1227 c         1038 g         1579 t
ORIGIN      
        1 gaacagtgat ggtatgatca taggttctgt tgagtatgaa tctgttatca gaccaaaacc
       61 cgcacgtgtt cctgcattga aaaacgacac aaccattcat ttgtcagcag gtgaactgtc
      121 gggtaaactg acttctctgc aaaaggcaac tattaccaac ctccagctta ctggcagtat
      181 agatgcccgg gattttaaga ccatgcggga cagtatgcca gcactgtccg ccatagatat
      241 aaatgctgtt tcagttttgg cctacacagg cacgctaggc acggcaggtt tccaaaacag
      301 gacttacccc gccgggagta ttcctcaaaa tgcattctct ttaggtgaga atgtctataa
      361 ctccaaacta gcttcgatta ttttaccaaa ttctattaca tctataggcg atagtgcttt
      421 ttacagatgc ataaatttga ccgggaattt ggtcatcccc ggttccgtta cctctatagg
      481 caatagtacc ttttacagat gcggaaattt gaacggtaca ttagtacttc ccaattcggt
      541 aactgcaatt ggtgagtacg ccttttccca atgtcagaat ttgactggcc tgatactttc
      601 agagtcgcta acgtcaatta gtgacggggc atttgatgga gactggacat tagagggaaa
      661 cttgacaatt cctaattcgg tgacttccat tggcgattat gcttttttct attgcaattt
      721 cacaggcgtc acctttccca attcagtgac ctccataggt gtcggagcct ttggtaaatg
      781 taagatgctg accggaaacg taacaattcc caattctatt actgcaataa gcgataatac
      841 gtttgcatta tgcgccagat taacaagcgt tacacttccc aattctgtaa cttctattgg
      901 caatagctct tttaccatgt ccggactgtc gagcattaca ctgtcaaatt tcattatttc
      961 gataggcgac tggacattca gcatgtccaa tttaaccggt ggttttgcaa tccctaactc
     1021 acttgcttcg ataggacatg gaactttctc attaaccggc ataactgaat ttattgtgga
     1081 aaacaataac ccgaatttct cggcagtaga tggagttttg tttagcaaag acaaaactcg
     1141 tttaatagct tatattccca acaaacatgg agtttatacc atcccggatt ttgttacttc
     1201 catcggcaac tacgcttttg attattgcaa cggattgaca gatattataa ttcccaattc
     1261 agtggtttca attggtatcg gtgctttcaa ttattgtgca gtgttaacat ctataactgt
     1321 caattccgct acgccaataa atttaggcga ttctacaagg gtatttgacc tggttaacaa
     1381 aacaaactgt acgctctatg tgccaaaaga tgccaaaccg ctttatcaat ctgccaatca
     1441 atggaaagat tttgttagaa ttgtagaaat gcttcccagc ggcaatgaca ccgaattgtc
     1501 aatcggcaat caggtgactc tttatccaat tccggcttcc gaaggttttt acattcattc
     1561 ccgaaccgat gagtggaata ccgttacaat ttacaacacg tgtggagtac tgctattttc
     1621 atcgaaggta aaaagccaga gttatattga tattgcaagt ttgcatgcag gtcagtatat
     1681 tgtaaaaatt ttaactcctg aaggtgtaat tgaaaagaga cttctgaaaa aataaaattg
     1741 ttcaatctgt gtagaaaagg agctatctcg aaagtgagac agcccctttt tttatttata
     1801 tcaaaaagca gataacatca gtcaaaacgt tcattttttt gacattacta accatctatc
     1861 tttggctgtg aaatttatcc aacaaatttc aaataacctt ttattaatca tctactaatc
     1921 atttattacc atgaaaaaaa ttactttttt agggataatt atgttgttat ctctttttac
     1981 ttttacagcg aaagccgaaa tcaactttga tttgactact gtcggcggaa caaaagttat
     2041 ggattgggct gctgttgcca ccgaaaatgc gaagactcaa acagacagat ggcttacact
     2101 aaccgcaatt gccagtggaa catccggaaa atgtggcaca gctacaacta ctttcgatat
     2161 taaaactggt tccagtcgtt caatttcgtt tttccttgct aaatgtgata atatgacaat
     2221 ctctgcgaac atagcctcag gtcgcggatt aattgtaact atcgatggtg gtactaatat
     2281 tcaacttgac ggtacaggag cttgtaaaga ttatgttgtt cccattaaca aagaagtgcc
     2341 ctgcgtaata aaggttgtgg ctctgacttc aagcagttcc tggacatcat tctttacttt
     2401 cacctatgca ccaaaaactc caactatttc tgctttcaaa atcaataata ctcccgcagt
     2461 tattgaccag actgctaaaa ccataacgct tcaaatgcct tacggaacag atataagtgc
     2521 agttacgcct gaagttacaa taatctcagc ttctggctat actcctttag gtgctcagaa
     2581 ttttactacc ggacctatta tttacgccgt ttctgatgct acaaccacca ataattatac
     2641 tgccaatata accgcaaaat caacccctga taccgacaaa tctatcacgt ccctgtctat
     2701 caacggcaca gcagccacca ttaacgaagc tgccggaact atcagctgcg agtttccgag
     2761 tttcaccggt gcattgggca attggccggt aactttcacc ctgagcggca caacctgttc
     2821 ggccaacttc acttccggtt ctaattacga ttttctggcc aataacacgc aaaccattac
     2881 ggttactgcc caggatttga gcaccaaagt gtacactatt acccccacca tttctaccaa
     2941 gaaaaacata ggtatgctta ccctgaacgg taaagctgaa tcgtacgaca atatcatgct
     3001 tactgcgttt aatgactatt atgtaaactt cctgacagcc gcagctactg ctcctgccga
     3061 catcaatgca ttttatgcca attacgattt aattgttttg cactcgaatg ttggtggtac
     3121 aaacgctacc gcagtagcaa ccaaagccat ggtaggtgtt aaacctgtat taaatcttaa
     3181 atcatttttc tataattcgg gcagatgggc ctggtcaact actgcccctg cgaatgctgc
     3241 tgcgggcata gcaagtgcag atgtacaaac caacttgcaa tcacacccga ttttctcgaa
     3301 tgtaaacttc actggaacga ctctatcatt tttcgacaac ttacctgtaa ccaatgccaa
     3361 tgccattcaa tatgccagcg atttagcaac acttagcggc atgacttcac aaaccattgc
     3421 aacggtaaac accacaggta tacaaatgca tgaaattcag gataatatag ctgctaaatt
     3481 tatcatggta gctctgggta gcgaaaacaa taattacaat tacctgaata gcaacagtgt
     3541 caatgtgctt aaaaattcag cagcttattt gttgaattct agtgcaaaat atacctaccc
     3601 aaccacaagt ttgaacaacc tgaatgaaaa aagtccgatt tattacaaca atggcttgat
     3661 taataaccct gagcagaaat caattgttat ttataacact gccgggatgt taatcaaaac
     3721 ttcgactgat aaaactatcg atacacaatc aatgtcaaaa ggagtttatc tggttcaaac
     3781 cgaaaatatg aaggtattca aatttatcaa gtaaaataaa tacattctta attacattac
     3841 gcgttacaat tccggttgta acgcgtaatt gctataaaat aagcagttat atgcgcatga
     3901 agaaacaaat attgatagca accatagctt gcggtttatt gagttttact cgggcccaga
     3961 cactacctac caaacagcag gtattggaca aaatgacctt ggccaacacc tatttcatgg
     4021 ccaaatggcc agatcctact gccaatatcg ttacaaacaa aagccgtcca agtaaccttt
     4081 ggacccgtgg aacgtattac gaaggattga tgcaacttta ttatctcact caggatgcta
     4141 ctctgcttaa atatgctgta gattggggaa cgtttcataa gtggcaacca acctatacag
     4201 gaacggtacc cacgcgtatt gccgataatc agtgctgctt tcagacttac ctggagcttt
     4261 ttcagctcga tccgaccaaa accgaacgga tagccactgc ccaggtaagc atcgatgcca
     4321 tggtcaattc caccaaagtg aacgattggt ggtggattga tgccatgcac atggctatgc
     4381 cgatgttcac aaaattcgga gtaataaaaa acgataataa gtatttcgaa aaaatgtacg
     4441 acctgtacaa ttacaccaaa aaacaggcta aaggcgtggg gctttacaat tcggccgatt
     4501 cgctctggta ccgcgacagt gtttacctcc ctcccaccaa aagtccgaat ggattgcctg
     4561 tatattggtc gcgtggcaat gggtgggttt ttgcggccct tacacgcacg ctcgacgtgt
     4621 tgccggctgt tgcaccgcat cgcgacgaat acgtcgccac attcaggcaa atggccggaa
     4681 aactgattcg catccagcgg cctgatggct tctggaacgt aaacctgggc gaccccaacg
     4741 attacggcgg caaagaaact tcgggaacgg tattttttac ctacggactg gcgtggggaa
     4801 ttaatcacaa cctgctcgat tcggccactt attaccctta tgtagtgaaa gcatggaacg
     4861 gattgataga ttatgcactt catacaacag gtaacctcgg ttgggtacaa tcagccggaa
     4921 gcaaacccgc cgatgggcaa ccactctcgt acgacaaaat gcctgatttc gaagattttg
     4981 gactgggcgg ttttctgctt gccggaagcg aagtgtataa attagcaaag gtttccaaca
     5041 attctacaaa aacaaatgcc attttgaaca ctgacctgca actctcggca tacccgaatc
     5101 cattttccga atccattcag attcgtttca aaccagcttc cggcaatgcc tgtttggtaa
     5161 taatgaattc aattggacaa agggtttata ccttatacac cgaaagtaac aatgcaatat
     5221 catttacatg gaatggcaga acgaactccg gtaaacttct tcccaaagga ttatatataa
     5281 ttcagctgca agacggaaaa cgacatcaaa ttgctaagat aattttgcag aaataagata
     5341 ctgaagtgct cttcagaaac gaaataattt acaaccggaa accttgcata gtgcaaagct
     5401 ttctgatcta ctatttttta tagtctgtct catagcctat tagtttgact tattaaccgt
     5461 gcaaatataa tcttttttct aacagaaaaa gacacaattg cttgtgcctt tttccggtt
//
LOCUS       DATDNM010000737         2808 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_409060, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000737 DATDNM010000000
VERSION     DATDNM010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409060"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..645)
                     /locus_tag="VI413_12385"
     CDS             complement(52..645)
                     /locus_tag="VI413_12385"
                     /inference="COORDINATES: protein motif:HMM:NF014618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease family protein"
                     /protein_id="HEY6915467.1"
                     /translation="MESEIELTITGLVYNQTVVGTYGLVLSEVNGNRRFSVMIGEPEA
                     QSIALKINNKKSPRPLTHDLIKSILNTFKAELIKVVIYDMVNDVFFSELHIKKNDEVL
                     IIDARTSDAVALAVRADCPIYIKSEILEIVGTEIEPAEVEEKEKETTPVNGEDLTADD
                     LDLLSIEALEELLEMALHEEKYELAVNIRDAIKRKKK"
     gene            890..1345
                     /gene="smpB"
                     /locus_tag="VI413_12390"
     CDS             890..1345
                     /gene="smpB"
                     /locus_tag="VI413_12390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEY6915468.1"
                     /translation="MFKKSNIVIKNKRATFDYEILDRFVAGIQLYGTEIKSIRDGKAG
                     LSDTFCTFINDELWVKNMHISTYFFGTYNNHDVRRDRKLLLTKRELSKLSRGTKETGN
                     TIVPTKLFINDKGLAKLEIGIAKGKKNYDKRQSLKEKEDKRSIDREMKR"
     gene            complement(1360..>2808)
                     /locus_tag="VI413_12395"
     CDS             complement(1360..>2808)
                     /locus_tag="VI413_12395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6915469.1"
                     /translation="IPNWVIAYFAVVSKGLVIVPVLPDFTREEIDNVMIHSESKVLFV
                     SERLASRVEGLEWPMLEARISVDDLSLMSGKIEPELTSKTPKVNVKEDDIAAIIYTSG
                     TTGRSKGVVLSHKNIAFVAMQSYTFHAITSSDIFLSLLPLSHTYENTIGMIYPIMYGA
                     SIYYLEKPPTAAALLPALAKIRPTMMLSVPLIMEKLYKTQIQSKFTGNRFKRMIYKTP
                     AFRMLIHRIAGKKLYQTFGGRLKFFGIGGAKIDSRVERFLKEARFPYAIGYGLTETAP
                     LLAGAGVRHTKLQSTGFAVQGVTLKINNPDKKGVGEIWAKGPNLMKGYYKNPEATAEV
                     LTEDGWFRTGDFGRLDSKKRLYIKGRMKSTIVGASGENIYPEDIETVINDHHLVIESL
                     VIEEDGYLVAKVLLDLDELEKHVEHIKSVIEDKKEKHRIWMQHFTKELNERLNRVSQI
                     KRVDIMDKPFEKTASHKIKRFIYSKPSHKKKS"
BASE COUNT          824 a          620 c          506 g          858 t
ORIGIN      
        1 aatcccatga tagtgtgaat atttaattag atgtagaata taagcagtta tttatttctt
       61 ctttcttttt atagcatcgc ggatatttac ggccaactca tatttttcct catgcagcgc
      121 catttcaagc aattcttcca acgcttcgat cgaaagtaaa tctaagtcgt cagcagtcag
      181 atcttcacca ttcacagggg tagtttcttt ttctttttct tcaacttctg ccggttcaat
      241 ttcggttcct acaatttcca gaatttccga ttttatataa ataggacaat ccgcacgaac
      301 ggccaaagcc actgcatctg aagtgcgggc atcaataatc agaacttcat catttttttt
      361 gatatgcaat tccgaaaaga acacatcatt caccatgtcg taaatcacca cttttatcag
      421 ctctgcttta aaagtattca ggatactctt gatcaaatca tgagtcaatg gtcttggaga
      481 ctttttatta tttattttca gggcaataga ttgtgcttca ggctcaccaa tcatcactga
      541 aaaccggcgg ttaccgttca cttcgctcaa cacaagcccg tatgttccaa ctactgtctg
      601 gttatacacc aaccccgtta tcgttaattc tatttctgat tccattatgt tctgattaat
      661 aattaataat actgcattaa taattattca tttctattga aaatttattt aattatccct
      721 tttttaacgg ggaacaaata tactgataat tttaaaagta aaaatcatat ttatattaaa
      781 cttgaaaata aagaatcccc aaagacttaa atagtgtgga gtaagtttac ctcgggtttt
      841 gcgatattca tttcttatat gtacttttgt tgggaaaatt gaaaaaagaa tgtttaaaaa
      901 atcaaatata gtaatcaaaa ataaacgtgc cactttcgat tacgaaattc tggatcgctt
      961 tgtagccggg attcagttgt atggcaccga gattaaatca atacgggatg gaaaagccgg
     1021 attgagcgat accttttgta catttatcaa cgatgaacta tgggtaaaaa acatgcatat
     1081 ctccacttac tttttcggga cctacaataa ccacgatgtc cgccgcgacc gtaaactgct
     1141 gcttaccaaa cgtgaactaa gcaaactatc ccgcggaacc aaagaaactg gcaacacgat
     1201 tgtccccacc aaactgttta tcaacgacaa aggacttgcc aagctggaaa taggaattgc
     1261 caaagggaaa aagaactatg acaaacgcca atcgctaaaa gaaaaggagg ataaacgctc
     1321 catcgaccgc gaaatgaaac gataaaaaag agctattact tagctctttt ttttatggct
     1381 tggcttagaa tatataaacc gttttatttt atgtgaagcc gttttttcaa atggtttatc
     1441 cataatatcc acgcgcttta tctgcgaaac gcggtttaat ctttcgttca gttctttggt
     1501 gaaatgttgc atccagattc tgtgtttctc cttcttatct tcgattaccg acttgatatg
     1561 ttcaacatgt ttctcaagct cgtccaggtc aagtaacact ttggctacca gatagccgtc
     1621 ttcttcaata accaacgact caataaccaa atggtggtca ttgataaccg tttctatatc
     1681 ttccggataa atattctcac cgctcgctcc cactatcgta cttttcatgc ggcccttaat
     1741 atacagtcgt tttttggaat ccaaccgacc aaaatcgccg gtacgaaacc agccatcttc
     1801 ggtaaggact tctgctgtag cttccggatt tttataatac cccttcatta aattcggccc
     1861 ttttgcccaa atctccccta cacctttttt atccggatta tttattttca acgttacacc
     1921 ctgtacagca aatcccgtgg attgcagttt ggtgtggcga acgcccgctc ccgccagcaa
     1981 cggagcagtt tcggtaagtc cgtagccgat agcatacggg aatcgtgctt ctttgaggaa
     2041 acgctccaca cgtgaatcaa ttttggcacc gccaatgcca aagaatttaa gccgcccgcc
     2101 aaaagtctgg tacagtttct tgccagcaat gcggtgaatc aacatacgga aagccggtgt
     2161 tttatatatc attcgtttga accggttacc tgtaaatttg ctctggatct gcgttttata
     2221 caacttttcc atgataagcg gcacagaaag catcatggtc gggcgtattt tggctaatgc
     2281 cggaagcaaa gcggcagcag tgggcggttt ttccagataa taaatggaag cgccatacat
     2341 aatcgggtaa atcatgccaa tggtgttctc gtaggtatgc gacaacggaa gcagcgacaa
     2401 aaaaatatct gaactggtaa tggcatggaa agtatacgat tgcatagcca caaacgcaat
     2461 atttttatgc gacagaacaa ctcccttgga tcgtcctgtt gtgccggaag tataaattat
     2521 tgcggcaata tcgtcttctt ttacgttgac tttgggagtt ttgcttgtca gttccggttc
     2581 tattttgcca ctcatcaaac ttaaatcgtc aaccgatatc ctggcttcga gcattggcca
     2641 ttccaaccct tcgacacgtg aagccaggcg ttcgctcaca aacagcactt tcgattcgga
     2701 atgaatcatc acgttgtcta tttcttcgcg ggtaaaatct ggcaaaacag gtacaataac
     2761 caatcctttt gaaactacag caaagtaagc aatcacccaa ttcgggat
//
LOCUS       DATDNM010000738         2355 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_943248, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000738 DATDNM010000000
VERSION     DATDNM010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_943248"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            90..380
                     /locus_tag="VI413_12400"
     CDS             90..380
                     /locus_tag="VI413_12400"
                     /inference="COORDINATES: protein motif:HMM:NF012442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEY6915470.1"
                     /translation="MNHKELIASMAAKMNAPKSVVADLLETTVATCTELLAERKTIGF
                     QSFGNFEVRKKEERLSVHPSTQVRTLIPPKLVVNFKQSNIVKDKLKDIPHHE"
     gene            373..1746
                     /locus_tag="VI413_12405"
     CDS             373..1746
                     /locus_tag="VI413_12405"
                     /inference="COORDINATES: protein motif:HMM:NF012442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0030527 - structural constituent of
                     chromatin [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEY6915471.1"
                     /translation="MNKEKISSQEIIDLVSSKASVSKRAAEEFLKVMIATIEEALLAG
                     DVVKIKNFGTFKLQWNEPRKSVNVQTGEEIILPGYHKVTFTPEASLKDIVNEPFAHLE
                     PVQLDGENEFVIPEKKEEEVLYPLRIFTEQASEIKDLLSEINALSSTPKRKENPINKE
                     IIVKDYFDVEEQHSKAAEVVIPVEKVEMPEPEIEPEIGSDIKTELSEVEVSEEPVFEV
                     PEVQRENVYVPESIEPVFEKESDSIFESTPFLMGLKPGRKRRRWLWVGVVTLLLAVCV
                     GLYMFFPPANKLGNNAFELTKNELSYVKDVSIPRLLNSVKKFFSPELRKIPVTETVVI
                     PKDTAVADTDTVEVQEPVDSLQLLFDNPRVYTEFIGSEQINAGSRLTIMSKKYYGTKD
                     FWVYIYEANKERIQNPDNIEMGTLIRIPKLDPRLIDASNPRCIQKALELHDKYVKKKA
                     SKSGSYN"
     gene            1963..>2355
                     /locus_tag="VI413_12410"
     CDS             1963..>2355
                     /locus_tag="VI413_12410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008761573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6915472.1"
                     /translation="MIQSVDIRELNERIERQSSFVDALTMGMDKVIVGQKHLVESLLI
                     GLLSDGHILLEGVPGLAKTLAIKTLSDLIKGDFSRIQFTPDLLPADVLGTMIYSQKKE
                     EFSIRKGPIFANLVLADEINRAPAKVQSA"
BASE COUNT          768 a          363 c          499 g          725 t
ORIGIN      
        1 ctatcaggcc aagattgtag atgcaactga ttttgatctt tatggtgttt aaattacttt
       61 ttcactagta actcttttat aacttactta tgaatcacaa agaattaata gccagtatgg
      121 ccgctaaaat gaatgccccg aaatctgttg ttgctgattt gttggaaact acagttgcga
      181 cttgtacgga gctattggcc gaacggaaaa caatcggatt tcagagtttt ggcaattttg
      241 aagtcaggaa gaaagaagaa cggctttctg ttcatccttc tactcaggtt cgtacgttga
      301 ttcctccgaa attggtcgtg aattttaaac aaagcaatat tgtaaaagat aaactcaaag
      361 atataccaca tcatgaataa agaaaagatt tcatctcagg aaattattga cctcgtttca
      421 tctaaagcgt cggttagtaa acgtgctgca gaagaatttc tgaaagtcat gattgctact
      481 atcgaggaag ctttgttggc gggggatgtg gtaaagatta aaaacttcgg aacgtttaaa
      541 ttgcaatgga atgagccgcg taagagtgta aatgtgcaga caggcgaaga aattattttg
      601 ccgggttacc ataaagttac attcactcct gaggcatctt tgaaagatat agtaaacgag
      661 ccctttgctc atttggaacc tgttcagttg gatggtgaaa atgaatttgt tattccggaa
      721 aaaaaggaag aggaagtgtt gtatcctttg cgcatattta cggagcaggc atctgaaata
      781 aaagatttgc tgtctgaaat aaatgcactg tcgtccactc caaagcgaaa agaaaatccg
      841 ataaataaag aaattattgt caaagattac tttgatgttg aagaacagca ctcaaaagct
      901 gcagaagttg taattcctgt tgagaaggtt gaaatgccag aacctgagat tgagcctgag
      961 attggatccg atattaaaac ggaactgtct gaagttgaag tgtctgaaga acctgttttt
     1021 gaagtacctg aagtacaacg tgagaacgtt tatgttcctg aatctattga acctgttttt
     1081 gaaaaagaat cagattcgat atttgagtct acgccatttt taatgggttt aaaacccgga
     1141 cgcaaaagaa gacggtggtt gtgggtagga gttgtaactt tgttgctagc cgtttgtgtt
     1201 ggactgtata tgttctttcc gcctgctaat aaattgggaa ataacgcatt tgagcttacg
     1261 aaaaacgagc tgtcttatgt gaaggatgtt tcaattccca ggctgctgaa ttcggttaag
     1321 aaattcttta gcccggagct aagaaaaatt ccggttacag aaactgtggt tatcccaaaa
     1381 gacactgctg tggctgatac tgatactgtt gaagtgcagg aaccggttga tagccttcag
     1441 ttgttgtttg ataatccgcg tgtttatacc gaatttattg gttcggaaca aatcaatgca
     1501 ggtagtcgat tgactataat gtcaaaaaag tattacggaa caaaagattt ttgggtgtat
     1561 atttatgagg cgaataaaga gcgtattcag aatccggaca atattgaaat gggtacattg
     1621 attcggattc caaagcttga tccgagatta atcgatgcct caaatccccg ttgtattcaa
     1681 aaagcgttgg aattgcatga taaatatgtg aagaagaagg cttcaaaatc aggttcgtat
     1741 aactaaataa ttttattgga ttgaaagttc tgcatatttt ttaaaatagc agaacttttt
     1801 tttgttcaat aaaaattaat ttcaacttaa aaaacggctg aaaaatccat cagtacttaa
     1861 ttatctaaaa tcaggttaat agatattaaa ccaatgcttt aacgggtttt ttaatgttat
     1921 atttgctaac cgaaattcaa aacaaaacta acataaaata atatgattca atctgttgat
     1981 attagggaac ttaatgaacg catcgaacga caaagttctt ttgttgatgc attaaccatg
     2041 ggaatggata aagttatcgt tggtcaaaaa cacttggtag agtctttact aatcgggctt
     2101 ttatcagatg gacacatttt attggaaggt gttcctggtt tagcaaaaac actggctatc
     2161 aaaactttat cggatttgat taaaggtgat tttagccgga ttcagtttac gcccgattta
     2221 ttgcctgccg atgtgttagg aacgatgatt tatagccaaa agaaagaaga atttagcatt
     2281 agaaaaggac ctatttttgc aaatctggta ttagctgacg aaattaaccg tgctccggca
     2341 aaagttcaga gtgct
//
LOCUS       DATDNM010000739         3575 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1155991, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000739 DATDNM010000000
VERSION     DATDNM010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1155991"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /locus_tag="VI413_12415"
     CDS             <1..848
                     /locus_tag="VI413_12415"
                     /inference="COORDINATES: protein motif:HMM:NF024983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY6915473.1"
                     /translation="LLKLRGLFNNLFDVDKHYQRKEYLLFPYLEKLEITGPPKVMWGK
                     HDEIRELIKGSIEVLQTTEITKEEFQATSEILLKLAARITDEMITKEEEILFPMALDN
                     LTERDWYEISRQSIEIGFCLYDPIVEWKPEWAEEQSINESQKSGSNIQLPSGSFSAEE
                     IMAILNTLPVDMTFVDKDDKVKYFSQSAERIFQRNRAILNRDVRHCHPPASAHIVDKI
                     LDDFKSGRQSRAPFWINMGGKMIYIEYFALRNEKGEYLGCLEVSHNVTPYRELEGEQR
                     ILSYK"
     gene            868..1389
                     /locus_tag="VI413_12420"
     CDS             868..1389
                     /locus_tag="VI413_12420"
                     /inference="COORDINATES: protein motif:HMM:NF020553.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1858 domain-containing protein"
                     /protein_id="HEY6915474.1"
                     /translation="MEKKDLIITPKTKVYDLLEAYPSLEDVLISYVPAFEKLKNPVLR
                     KTVAKVATLQQAAAIGNVNISDLINVLRKESGQEAELAVMEDQQYNYAQPSWFLEANV
                     AVQFDVREMLARGEHPVNQVMEDLKILPEGKIYQLIAPFLPVPLVDKASGLNFSHWIV
                     QKDEQLFYIYFSK"
     gene            1401..2588
                     /locus_tag="VI413_12425"
     CDS             1401..2588
                     /locus_tag="VI413_12425"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY6915475.1"
                     /translation="MSEFTNTSELRANELAEYMFGLLRGENGSELIEKHEIKTSKFIP
                     HDILNAFDILIEKNVPIEDIKFVSNKLFNILYQTLLEYPTLDLTENPFTALMVEDNKL
                     ITNKLKDTKEFIKKINAGVKPGLLNELIARFEEIEKYILHYTVIENVVFPKLESEWKH
                     HLCVKVMWSFHDDIRRNIAKMIALLKSDEFDLKAFNTLSGLIFFNISTIVLREEKIIF
                     PVMLETMPAEMLENMLDETVEIGLPYAQTKHKASKVQPTFTSEDKIHLPTGVLSAEQF
                     NMIFNHMPVDITYVDENDTVRFYSNPPRRIFPRTPAIIGRKVQNCHPPESVHVVNRIV
                     ESFKTGEKDVATFWFHMGPRFIMIQYFAVRDTNRNYKGVLEVSQEITEIQQLEGDRKL
                     LDW"
     gene            2728..>3575
                     /gene="hcp"
                     /locus_tag="VI413_12430"
                     /gene_synonym="priS"
     CDS             2728..>3575
                     /gene="hcp"
                     /locus_tag="VI413_12430"
                     /gene_synonym="priS"
                     /EC_number="1.7.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008779576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016661 - oxidoreductase activity, acting
                     on other nitrogenous compounds as donors [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxylamine reductase"
                     /protein_id="HEY6915476.1"
                     /translation="MFCYQCQEAAKGSGCEVKGVCGKTPEVSALQDLLIYQIKGLSHY
                     TTALRLLEIENDAANTFITDSLFMTITNANFDYERFVTRIREGFKLRSELKAILHENK
                     IELPHNELLSWTAITAQEMESIAQHVGVLATVNEDIRSLRELVIYGLKGMAAYLEHAS
                     NLGSFDNEAHAFTQRALVATTNDSLTADELTALVLETGKMGVQVMALLDKANTSSYGN
                     PEITKVNLGVRNNPGILISGHDLKDMEELLKQTEGTGVDVYTHSEMLPANYYPAFKKY
                     SHFVGN"
BASE COUNT         1149 a          716 c          771 g          939 t
ORIGIN      
        1 aactgttgaa attgcgcgga ttgtttaata acctgttcga tgtggacaaa cactaccaac
       61 gcaaggaata ccttcttttc ccttacctcg aaaagcttga aattacgggc cctcccaagg
      121 taatgtgggg taaacatgat gaaatccgtg agttgataaa aggcagtatt gaagtgttgc
      181 aaacaacaga gattaccaaa gaagagtttc aggcaacttc ggaaatctta ctcaagctgg
      241 cagcgcgcat taccgacgaa atgattacca aagaagagga aatccttttc ccgatggcat
      301 tggataattt gacagaacgc gactggtacg aaataagccg ccagtcaatc gaaattggtt
      361 tttgcctgta tgatcctatt gtggaatgga aacctgaatg ggctgaagaa cagtcaataa
      421 acgaatcgca aaaaagcggc agcaatatcc aacttccttc cggaagtttc tcggccgaag
      481 aaatcatggc cattctcaat accctgcctg tggatatgac ttttgtggat aaagatgata
      541 aagtaaagta tttttcgcaa agtgccgaac gtattttcca acgcaaccgg gccattctca
      601 accgcgatgt acgccattgc cacccgcctg caagtgcaca tattgtggat aaaatactcg
      661 atgatttcaa aagcggccgc caaagccgtg caccattctg gatcaatatg ggtggaaaaa
      721 tgatttatat cgaatacttt gcccttcgca acgaaaaagg cgaatatctg ggctgcctcg
      781 aagtttcgca caatgtaact ccataccgcg aactggaagg cgaacaacgg atattatcgt
      841 ataaataatg gattaataat caaagttatg gaaaaaaaag atttgataat cacaccgaaa
      901 actaaggtgt acgatttact tgaagcatat ccttctctcg aagacgtact gattagttac
      961 gtaccagctt ttgaaaaact gaagaatccg gttttgcgca aaacagtggc aaaagtggct
     1021 actttgcagc aggcagcagc tattggaaat gtgaatataa gcgacctgat taatgttttg
     1081 cgtaaagaat ccggccagga agctgaattg gcagttatgg aagatcaaca atacaactac
     1141 gcgcaaccat cttggttttt agaagcgaac gtagcagtac aattcgacgt gagggaaatg
     1201 ctggcaagag gcgagcaccc agtaaatcag gtaatggaag acctgaaaat tcttcccgaa
     1261 ggtaaaattt accagttgat tgcgccgttt ttaccggttc cgcttgtcga caaagcttcc
     1321 gggttgaact tttcgcactg gattgtgcaa aaagatgagc aattgtttta catctatttt
     1381 tcaaaataaa aaaaacgata atgtccgaat ttacaaatac ttccgaactc agagcaaatg
     1441 aacttgccga atatatgttt ggtttgttga ggggcgaaaa tggttcggag ttaatcgaaa
     1501 agcacgaaat caagaccagc aaattcattc ctcacgatat tttgaatgca tttgacattc
     1561 tgattgagaa aaacgtgccg attgaagata ttaagtttgt ttccaacaaa ctctttaata
     1621 tcctgtatca gaccttgctc gaatatccaa cgctggatct gaccgaaaat ccgtttacgg
     1681 ctttgatggt tgaagacaat aagctgataa cgaataaact gaaagacacg aaagagttta
     1741 tcaaaaagat aaatgccggt gtcaaacccg gattattgaa tgaactgatt gcgcggtttg
     1801 aggaaattga aaaatacata ttgcattaca cagttatcga aaatgtggtt ttcccaaagc
     1861 tcgaaagcga atggaaacac catttgtgtg taaaggttat gtggtcgttt catgacgata
     1921 tccggcggaa tatagctaaa atgatagctc tgctcaagtc ggatgaattc gatttgaaag
     1981 cattcaatac cctgagcgga ttgattttct tcaatatcag taccattgtt ttgcgcgagg
     2041 aaaagattat tttcccggtt atgctcgaaa ccatgccggc tgaaatgctg gaaaatatgc
     2101 tggatgaaac cgttgaaatc ggtttgccgt atgctcaaac caaacataaa gcaagcaaag
     2161 ttcagccgac gttcacctcg gaggataaaa ttcatttgcc gacgggagtt ttgtcggccg
     2221 aacaattcaa tatgatattc aatcatatgc cggttgatat aacttatgtg gacgaaaacg
     2281 atacagtgag gttctattca aatccgcctc gccggatttt ccctagaaca ccggctatta
     2341 taggacgtaa agtacaaaac tgccatccac ctgaaagcgt acatgtggtg aaccggatag
     2401 ttgagtcgtt taaaaccggt gaaaaggatg ttgctacatt ctggtttcac atgggtccaa
     2461 gatttattat gattcagtac tttgcagtgc gcgacacaaa tcgaaattac aaaggcgtgc
     2521 tggaagtatc gcaggaaatt actgaaattc aacaactcga aggagaccgg aagttattgg
     2581 attggtagga atacccctaa cctccgtcag ttgacggaca agctctaaag gggaaaggaa
     2641 attacatata attttaaaaa tcaaatatta ctaactgctc ttactcccct ttaggggtta
     2701 ggggtaaaaa tcaattaaat tatgaatatg ttttgctatc agtgccagga ggcagccaaa
     2761 gggtcgggat gcgaggttaa gggagtttgt ggaaaaactc ccgaagtatc agctctccag
     2821 gacttactta tctatcaaat caaaggttta tcacattata caacagctct tcgtctgttg
     2881 gaaatcgaaa atgatgctgc caataccttt atcaccgaca gtctgtttat gactatcacc
     2941 aacgcaaact tcgactacga acgctttgta acccgaatcc gcgaaggatt caaactccgc
     3001 tctgaattaa aagccattct ccacgaaaat aaaattgaac ttccacataa cgaattactt
     3061 agctggacag ccattaccgc tcaggaaatg gaatcaattg cgcagcatgt tggcgtatta
     3121 gcaactgtaa acgaagatat ccgttcatta cgcgaactgg ttatttacgg tttgaaaggt
     3181 atggcagctt atcttgagca cgcttccaac cttggttcat tcgataatga agcacatgca
     3241 tttacacaac gtgcgttggt agcaactacc aatgacagtc tgacagccga cgaactgact
     3301 gctttggttc tcgaaaccgg taaaatgggc gtgcaggtaa tggcattgct tgataaagct
     3361 aatacatctt catacggtaa ccctgaaatt acgaaggtta atcttggtgt tcgcaacaat
     3421 ccaggtattc ttatcagcgg ccacgatctg aaagacatgg aagaactgct gaaacaaaca
     3481 gaaggaactg gcgttgacgt gtacacgcac agcgaaatgc ttcctgccaa ttattatcct
     3541 gcattcaaga aatacagcca ttttgtgggt aacta
//
LOCUS       DATDNM010000740         3217 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1156025, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000740 DATDNM010000000
VERSION     DATDNM010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3217
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1156025"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..248
                     /locus_tag="VI413_12435"
     CDS             <1..248
                     /locus_tag="VI413_12435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="CfiA family subclass B1 metallo-beta-lactamase"
                     /protein_id="HEY6915477.1"
                     /translation="EGHTRDNIVSYIPSVKVLFGGCLIKALSSGKGNLAEANISAWPE
                     SVRNVQQKFPEAVIVIPGHGAYGGMTLLDYSIKLFSK"
     gene            691..1083
                     /locus_tag="VI413_12440"
     CDS             691..1083
                     /locus_tag="VI413_12440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1398 family protein"
                     /protein_id="HEY6915478.1"
                     /translation="MFTTEQIKAAHAKVKSGADFPAYVQDLIRLGVKSYDLFVADGHA
                     EYFGEKGYKTASEANYAALAIAESSNKETFKQKLKSHQQGETDYMTFCRDAATSGVEK
                     WTVDMQEMTCAYYDKAGNKLVVETIPGV"
     gene            1112..1627
                     /locus_tag="VI413_12445"
     CDS             1112..1627
                     /locus_tag="VI413_12445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915479.1"
                     /translation="MAESIDIAGIIIPDNSPVFLTFIGIHIVVALLCLISGVLAMLTS
                     KTNRRHPVYGTFYFWSLSVVFLTSICLSVIRWPLDNHLLVLGTLSFVLALGGRLAQRH
                     KWKNHMRWHLAGMSGSFILLLTAFYVDNGKNLPLWELLPEITYWVLPTLIGIPICIHV
                     LLHHPLTRFKK"
     gene            2049..2981
                     /locus_tag="VI413_12450"
     CDS             2049..2981
                     /locus_tag="VI413_12450"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEY6915480.1"
                     /translation="MKTVRIHEYGNAEVLCLEEMPVPTIAADELLIKIHAASVNPIDW
                     KIREGQLKDMHLHHLPLTLGWDFSGTVEKMGSEVKGFRIGDDVYCRPAIDRDGSYAEY
                     IEVKANEVALMPKSVTYDEAASVPLVGITAWEALINKAKIKKGQRVLVLAASGGVGSL
                     AVQIAKSRGCYVIGTTSGVNVEFVKNLGANEVIDYMSQDFSEKISDIEVVLDTIGGAA
                     QEKAFKVMRRGGILVSTVGNPSPELAERYGVRVDSIFIGPNAHILNELRELIDNGQIR
                     PVVDKVFRLEDVKQAQNYSQSGKARGKIVLEIAS"
BASE COUNT         1002 a          627 c          705 g          883 t
ORIGIN      
        1 gcgaaggcca tacccgcgat aatattgtca gttatattcc gtccgtaaaa gtacttttcg
       61 gaggttgcct tatcaaggct ttgagctcgg gaaaaggaaa cctggccgaa gccaacatat
      121 cggcgtggcc ggaatcggtg cgcaacgtgc aacaaaaatt ccccgaagca gttatcgtaa
      181 ttccgggtca tggagcgtat ggcggcatga cgttgctgga ttacagcatt aagctgttta
      241 gcaaataaaa cctggttttc agtaactaat tacttcccct gattataatc ctaatctgca
      301 ggcgctggcg aggaaagtta aacaaaattt tcctgctgct gttatattta ttcggttaca
      361 caaatccgat aatgataaat catataaatt aaggattaaa ctgaaatcgt agtagctaaa
      421 tatttgccac gaagtggtta aatttgaata accgtgtgtg aagcccacgg aattaaataa
      481 aaaatactct cagccacgaa gtggttgaat aatgcttttc catgttgagc ccacttcggg
      541 gctgatattg caggctcttt atcatccgtg ggcttcaccc acggttattc aaattaggcc
      601 ctttcagggc cttacattat attgaaacat tattttgacc ctaaattcac ataaatcacg
      661 attttattat ctttcaataa taaatatatt atgtttacaa cagagcaaat aaaagcggca
      721 catgccaagg taaaaagcgg agcggatttt ccggcttacg tgcaggatct aatccggttg
      781 ggagtaaaaa gctacgactt atttgtggcc gatggccatg ccgaatactt tggcgaaaag
      841 ggatataaaa ccgcttcgga agccaattac gctgcattag ccatagcaga aagcagcaac
      901 aaggaaactt tcaaacaaaa gctgaaaagc caccagcaag gcgaaaccga ttacatgact
      961 ttttgccgag acgcggccac ctcgggtgtg gaaaagtgga cggtagatat gcaggaaatg
     1021 acctgcgctt actacgacaa agccggcaat aaactggtgg tagaaacaat tccgggcgtg
     1081 tagtttattt gctccaaaat ctgaaactat tatggcagag tcaattgata ttgcaggcat
     1141 tatcatccct gataattcac cggtattcct cacatttata ggaattcata tcgttgtggc
     1201 cctgctatgc ctgatcagcg gagtgctggc catgttaacc agcaaaacaa acagacggca
     1261 tcccgtttat ggtacatttt atttttggag tttatcggtg gtattcctca caagcatttg
     1321 cctttcagtc atccgctggc cgctggataa tcatttgctg gtattgggta ctctttcgtt
     1381 tgtcctggcc ttaggcggac ggttggcaca acgccacaaa tggaaaaacc acatgcgatg
     1441 gcatctggca ggtatgtccg gttcatttat cctgttgctg acagcattct atgtggataa
     1501 cggtaaaaat ttgccgctgt gggaactgtt gccggaaata acatactggg ttttacccac
     1561 tctcattggc atccccattt gcatccatgt gctgctccat catccactca cccgtttcaa
     1621 aaaataggct tcagcccatg tctctccctg ctttttatcc tcctgaaact tttcaattaa
     1681 aactccggat atatgtacta ttattcatat agtttaaaat aaacacttga agcttagaat
     1741 actaaattgt cccaaaaaat tgaacatccg ttcacggttt ctgttttttc aagtattcaa
     1801 aacaggtcta tgtcaacata aaaattgctt tcagcaaata aacagggaag agtttcattt
     1861 tcaacaagta taacaaaaga ggagaaagta atttcgtaaa atccggttca taatctgaca
     1921 caaatgttgt gttggtcgat tcaactgatt ttaacgcata gcaatgttct gaatactttt
     1981 aaagaataat tgaaacggat aaaaaaaaag tttcggttgt tcagttacta atcaaaaact
     2041 attgtattat gaaaacagta agaattcatg aatatgggaa cgccgaagta ctttgtctgg
     2101 aagaaatgcc tgttccaaca attgcagccg atgaattatt gattaagatt catgccgctt
     2161 cagtaaatcc aatcgattgg aaaatacgcg aagggcagct gaaagatatg catctgcatc
     2221 acctgccgct cacgctgggt tgggattttt cgggtacggt tgaaaaaatg ggaagtgaag
     2281 taaaaggttt cagaattgga gacgatgttt actgccgccc cgctattgac cgggatggct
     2341 cgtatgcaga atatattgaa gtgaaagcga atgaagtggc cttaatgcca aaatctgtaa
     2401 cgtacgacga agcagcttca gttccacttg taggtattac ggcctgggaa gcacttatca
     2461 ataaagctaa aatcaaaaaa ggccaacggg tgctggttct tgcagcatcg ggtggtgttg
     2521 gctcacttgc cgttcaaatt gccaaaagca ggggatgtta tgtaattgga accacttcgg
     2581 gtgtgaatgt agaatttgtg aaaaatctgg gtgccaatga agttattgat tatatgagtc
     2641 aggatttcag cgaaaaaatc tcagacattg aggtagtact ggataccatt ggaggtgccg
     2701 cccaggaaaa agcatttaaa gtaatgcggc gtggtggcat tttagtgtct acagtaggta
     2761 atccaagccc cgaactggca gaaaggtatg gtgtaagagt cgatagtatt ttcattggac
     2821 ctaacgcaca cattctgaat gaactgagag aactgattga caatggccag ataaggccgg
     2881 ttgttgacaa agtattcagg ctggaagatg taaaacaggc tcaaaactac agccaatccg
     2941 gcaaagcacg cggtaagatt gtgttagaaa ttgccagctg acaaccaatt tagtattaaa
     3001 tcatatgttc cactaaagcc ggcggcaatg tcgttggcag tggacatttt attaaaagaa
     3061 attacctgca acgtttcata aaatatggca ggtagcaaat aaagaaatgg aaaaaacaaa
     3121 acaagaactg attgatttat tttttaatgc ctatgccaaa cgagatgtag aaggtatcaa
     3181 gcaagtcatg tccgaaaaag taacctggac attctcg
//
LOCUS       DATDNM010000741         3354 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_836389, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000741 DATDNM010000000
VERSION     DATDNM010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3354
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_836389"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1753
                     /locus_tag="VI413_12455"
     CDS             <1..1753
                     /locus_tag="VI413_12455"
                     /inference="COORDINATES: protein motif:HMM:NF024603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Ig-like domain-containing domain"
                     /protein_id="HEY6915481.1"
                     /translation="KAQGPTGGPKDETPPKVMKSVPLNNSLNFSKKQIYIDFDEMVSI
                     EKANENVIISPPQVKPPDVKSSGKRVSVNFNEDLLDSTTYSINFGSAIVDLNEKNALK
                     NYLFSFSTGNQIDTLKISGTVINAEDLNPMSGVIVGIYVETSDSVFYQKPFLRIGKTD
                     EKGHFSIDNVKKGTYKIFALGDANHDYYFQPGEGLALCDSLMNPTFTRVQMQDSIWKD
                     SLHFDSIRTYIGTRFLPDDITLRFFKENKKRQYFVKYERKEPFSFSLFYNTSATELPT
                     IKPLNFDWEGKYLLQKNATMDSLTYWITDSTVWKVDTLQMAVTYLKSDSAMKLGPVTD
                     TLNVFMRKARVNPKARQPKTAAKVEALKLTSNVAPVFEVYNPILLKFEAPLSKMDISK
                     IKLSQKVDTILKPIPFKWRQVDSTKTSFAIDSKWIPETSYELKIDSAAFVSIYQKVSN
                     AFTGQFKIRSLDEYSSVKMFLAHFNPKVMLQVLDPKDNLLATKPASEKGTVFEYLKPG
                     DYYVRMFIDDNGNGKWDPGDLATRKHPEEVFYYPKKLTLMANWEFEETWDYTTVPLLK
                     QKPVELLKDASKKKEGY"
     gene            1786..1858
                     /locus_tag="VI413_12460"
     tRNA            1786..1858
                     /locus_tag="VI413_12460"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1819..1821,aa:Gly,seq:ccc)
     gene            2027..2977
                     /locus_tag="VI413_12465"
     CDS             2027..2977
                     /locus_tag="VI413_12465"
                     /inference="COORDINATES: protein motif:HMM:NF024245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEY6915482.1"
                     /translation="MWKDFFYFSRGQKSGIIVLIVLIVLAFAANYFLPYFFPTTEEDG
                     SVFLAEVETFKKSLVSRDSLRQADWQRQYEERQRLYEEKYKNYPSYTTKTFFEKKKDS
                     YTLFPFDPNTIDSAGFVRLGLKPFIASNILKYRSKGGRFKTAADFAKVYGIFPDKIKE
                     LEPYITIAELKPVKNETTPAKRTDIIVDLNSADTTLLMQVKGIGRGYAKGIVRFRQST
                     GGFVSVDQLSEIFGMRPENLEKIRPFCTINMALVQKIKVNTATAQRLDAHPYLNFYQA
                     RAIYELRRNKGKLHDVNDLKVLSELTTDDLMKIKPYLSFE"
     gene            3073..>3354
                     /locus_tag="VI413_12470"
     CDS             3073..>3354
                     /locus_tag="VI413_12470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6915483.1"
                     /translation="MKTISGNIVDVISKTISKGIVLFENGKIIDIQPAVEVEDQFIIP
                     GFVDAHIHIESSMMLPAEFASYSVVHGTVACVCDPHEIANVCGVAGVDYM"
BASE COUNT         1040 a          561 c          700 g         1053 t
ORIGIN      
        1 taaagctcag ggaccgacag gtgggccgaa agatgagaca cctcccaaag tgatgaagtc
       61 agttccattg aacaattctc tgaactttag caaaaagcag atttatattg atttcgacga
      121 aatggtttct attgagaaag caaacgaaaa cgttatcatt tcgcctcctc aagtcaaacc
      181 gcctgatgtg aaatcttcag ggaaacgtgt ttctgtaaat ttcaatgaag acttgctgga
      241 tagcactact tattcgatta atttcgggag tgcaattgta gatttgaatg aaaagaatgc
      301 gcttaaaaac tatttgtttt ccttttctac cggaaatcag attgatacgt tgaagatatc
      361 gggaacagta attaatgccg aagatttaaa cccgatgtcc ggtgtcattg tcggaattta
      421 cgttgaaact tcagattcag tgttttatca aaaacctttt ttgcgtattg gcaagacaga
      481 tgaaaaaggg cacttctcta tagataacgt aaaaaagggg acatataaaa tttttgcact
      541 tggtgatgct aatcacgatt attattttca accgggtgaa gggttggctt tgtgtgactc
      601 tcttatgaac cctactttta caagagtaca aatgcaagat tcaatatgga aagattctct
      661 gcattttgat agtatccgaa cttatattgg cacacgtttt ttaccggatg atattacgct
      721 tcgttttttt aaggaaaata agaaacgtca gtacttcgta aaatatgaac gcaaggaacc
      781 gttctcgttt agcttgtttt ataatacatc tgcaactgaa ttgccaacta taaaaccatt
      841 gaactttgat tgggaaggga aatatctgct tcagaaaaat gccaccatgg atagtttgac
      901 ctactggatt actgattcta cggtgtggaa agttgatact ttgcaaatgg cagtcacgta
      961 tttgaagtcg gactcagcaa tgaaacttgg tcctgtgact gatacattga atgttttcat
     1021 gcgcaaggca cgggtaaatc caaaggcacg gcaacccaaa actgcagcaa aagtagaagc
     1081 gttgaaattg accagcaatg tggcgccggt atttgaggtt tataatccca ttttattgaa
     1141 atttgaagcg ccattatcta aaatggatat ttcaaaaata aagcttagtc aaaaagttga
     1201 tactattctt aaaccgatac ccttcaagtg gcggcaggtt gattctacaa aaacttcttt
     1261 tgccattgat agtaaatgga ttccggaaac ttcgtatgaa ttgaagattg actcggcagc
     1321 atttgtaagc atttaccaga aagtcagcaa tgcattcaca gggcaattta aaatccgttc
     1381 gttggatgaa tattcaagtg tgaaaatgtt tttggcacat tttaatccta aagttatgtt
     1441 gcaggttctt gatcctaaag ataatctgct ggctactaaa ccggcatctg aaaaagggac
     1501 tgtatttgaa tacctgaaac cgggcgatta ttacgtgcgg atgtttatcg atgataacgg
     1561 caacgggaaa tgggatccgg gggatttggc tacacgtaag caccctgaag aagtttttta
     1621 ttatcccaaa aagttgactt tgatggcaaa ttgggaattt gaagagactt gggattatac
     1681 aacggtacca ttgctaaaac aaaaaccagt tgagttgttg aaagatgctt caaagaaaaa
     1741 agaaggatat taatatcatt taagagccga ttatgtgatt tttatgcggc agtagctcag
     1801 ttggtagagc tttagcttcc caagctaaag gtcgcgggtt cgagtcccgt ttgccgctct
     1861 ttttccaaag tattacacat atttgactaa aagcaaaaga tggatatctc atttgaggta
     1921 tccatctttt ttaggtttag gttaataatt atatagattt tatttgttaa ggtgaataaa
     1981 tgtttctata tttgggcaga ttttgtttaa cctaaaaagc acaactatgt ggaaagactt
     2041 tttctatttc tccagaggcc aaaaatcggg gattattgta ctgattgtgt tgattgtttt
     2101 ggcttttgct gcaaattact ttttgcccta cttttttcca accactgaag aagatggatc
     2161 agttttttta gcagaggtgg aaacttttaa aaagtcactt gtttcccgtg atagccttcg
     2221 gcaggcagac tggcagcgac agtatgaaga gcgtcagcgt ctttatgaag agaaatataa
     2281 aaactatcct tcgtatacga caaaaacttt ttttgaaaag aaaaaagatt catatacctt
     2341 gtttcccttt gatccgaata ccattgattc tgccggtttt gtgcgtttag gactgaagcc
     2401 atttatagcc tctaatattt tgaaataccg aagtaagggt ggaagattca aaactgctgc
     2461 ggattttgct aaagtgtacg gcatctttcc tgataaaata aaagaacttg aaccatacat
     2521 tactatagct gagttaaagc cagtgaaaaa tgaaacaaca ccggcaaaac gaacggatat
     2581 aattgtagat ttgaattctg ctgatacaac attattgatg caggtaaaag gaattggccg
     2641 tggttatgct aaaggaattg ttcgtttcag gcagtcaaca ggtggatttg tatctgtcga
     2701 tcagttgagc gaaatatttg gtatgcgccc tgagaatctt gaaaaaatac gcccattttg
     2761 tactataaat atggctttgg ttcagaaaat aaaagtcaat actgctaccg cccaaaggtt
     2821 agatgcgcat ccttatctca acttttatca ggctcgggct atttatgaac ttcgcaggaa
     2881 taaaggaaag cttcatgatg taaatgacct taaagtgtta tccgagttga ctacagatga
     2941 tttgatgaaa attaaaccat acctgagttt tgaataaata attttctttt tgcagtcttt
     3001 cttctgaaat ttcggttcat tattctgatt tttccctaca tttgtttttt catgaattta
     3061 ataacccagc ttatgaaaac gatttcagga aatattgtgg atgtgatttc gaaaactatc
     3121 tcaaagggaa ttgtcctgtt tgaaaatggt aaaatcattg acattcaacc cgccgtcgaa
     3181 gtcgaggatc agtttattat tcccgggttt gttgatgcgc atattcacat agaaagttcg
     3241 atgatgttac cggctgagtt tgccagttac agcgtggtgc atggtacggt ggcttgtgtt
     3301 tgcgacccac acgaaatagc aaacgtatgc ggggtggcag gcgttgatta tatg
//
LOCUS       DATDNM010000742         3002 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_196003, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000742 DATDNM010000000
VERSION     DATDNM010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3002
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196003"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..896)
                     /locus_tag="VI413_12475"
     CDS             complement(<1..896)
                     /locus_tag="VI413_12475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-arabinofuranosidase"
                     /protein_id="HEY6915484.1"
                     /translation="MNWKKISLTKLTLLLLIMVGTIQAQTKITVDVNKPGHVISPTLF
                     GIFFEDINLSADGGLYPELVRNRSFEDADTLQSWKFISLQGKSEAKISPAEIYARPQI
                     PPLNPFNRKALLISAAGSFKLKNSGYWGMNMVQGGSYTLKLAARAIDGFSSPLKIRIL
                     DTKGNEISSAEIKGITGSWAYYTANLKMSTGDPKASLEISGEGNGKLFMDMVSLMPDK
                     TWKNHGLRTDLAEAFDAIHPKLFRFPGGCWVEGNEMKQMNQWKKTIGNIDTRTPLWNF
                     WGYNATNWLGFHEYLQLAEDLGA"
     gene            complement(968..2896)
                     /locus_tag="VI413_12480"
     CDS             complement(968..2896)
                     /locus_tag="VI413_12480"
                     /inference="COORDINATES: protein motif:HMM:NF015585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HEY6915485.1"
                     /translation="MKTSKKYIKALVLMGLLLLSANSFSRNPNFHIYICFGQSNMEGQ
                     GAIETQDKMVDSRFKVLQSLDCTDRNKGTWYPALPPLCQCTSGLSPADYFGRTVVKYL
                     PDSITVGVINVAIGGCDIRMFDKDLYQGYLNPSDATFSAKVQAYGGNPRKHLMDLAKL
                     AQQDGVIKGILLHQGEANTGDVNWPKYVKKVYNDMLSELSLSADTVPLLSGEVLYTGM
                     FLHMNPIVNQLPNVVPTAHIISAEGLTGDWGHFTSDGYRKLGTRYAAEMLSLMGVKAK
                     VFEPENYYYEPECSKLGANWNIVTDKTASNNNYVTIKPGTNNTTAASTDSANAIYFDF
                     TAKTDTTFYVYARVNCATLKSDSYWFKMDDGSFEYVNGLPKGAWTWVKVKSYNLKAGH
                     HTLAIANGEEGARLDKIYISNVDVLPTGMGDQAVKAFNPVVYSVPGKIEAESYSYQLW
                     VLSEKTTDIDGVSDVTNIDTDDFMEYLVNVPTDTIYKATFRYTSPYSNGAVAVLLDEN
                     SVGSISLPGTGSLYKSAATNIPLKAGRHILKLNATTGGFKLNWFMLEKVKTTGIENVL
                     GKGLSVYPNPTNGELNIKSDIYQFSNVKIIDCAGKQVYSRKFDLTNHINFNPQLQKGI
                     YFLTLNDNQTHNIKIVID"
BASE COUNT          847 a          663 c          542 g          950 t
ORIGIN      
        1 gctcccaaat cctctgcaag ttgaagatat tcgtggaaac caagccagtt tgtggcattg
       61 taaccccaaa agttccaaag tggcgtacgc gtatctatat ttccaatggt ttttttccat
      121 tgattcattt gtttcatttc attcccttcc acccagcagc cgccagggaa acgaaaaagt
      181 ttggggtgaa tagcgtcaaa tgcttcggca aggtcggttc gcaagccatg atttttccat
      241 gttttatctg gcataagtga aaccatgtcc ataaataatt ttccattacc ttcgcctgag
      301 atttccagac ttgctttggg atcacctgtg ctcattttca ggtttgcagt gtaatacgcc
      361 caactaccag taattccttt aatctcggca gaggatattt cattgccttt cgtatccaaa
      421 attctaattt ttaatggcga agaaaagcca tcaatggcac gtgcagccaa cttaagcgta
      481 taacttccac cctgcaccat attcatgccc cagtagcccg aattcttcag tttgaaagaa
      541 cccgctgccg agattagcaa ggcttttcga ttaaacgggt ttaatggagg aatttgtggc
      601 ctcgcataaa tttcagcagg gcttatcttc gcttcgcttt taccctgaag actaataaac
      661 ttccagcttt gaagcgtgtc ggcatcttca aacgaacggt ttctgaccaa ttcgggatac
      721 aatccaccat cggcagaaag atttatatct tcgaagaaaa taccgaacaa agtaggcgaa
      781 attacatgtc ccggtttgtt tacatcaacg gtgatttttg tttgtgcctg aatggtgcca
      841 accattatca aaagcaatag agttaattta gttagagaga tttttttcca attcatattt
      901 gatatttttt ttgtcttact ttttgtgtta ctttttctga gtgttctgaa tataaggcta
      961 cctccaccta atcaataaca attttaatgt tatgagtttg attatcatta agcgttaaaa
     1021 aatagatccc tttctgtaat tgcggattga aattgatgtg attagtcaaa tcaaattttc
     1081 tgctatacac ttgttttccg gcacaatcaa taatctttac attactaaat tgatatatat
     1141 cacttttaat attcaattca ccattggtcg gatttggata aacacttagt ccttttccca
     1201 aaacattttc aattccagtt gttttgactt tctctaacat aaaccaattc aacttaaacc
     1261 cacccgtagt agcattcaat ttaaggatat gtctgcctgc ttttaaggga atattcgttg
     1321 ctgccgattt atataaactg cccgtacccg gtaaggatat tgaaccaaca gagttctcat
     1381 cgagcaatac agcaactgct ccatttgaat aaggtgaagt ataacggaag gttgctttat
     1441 aaatagtatc cgtaggcaca ttcaccagat attccataaa atcgtcggta tctatattcg
     1501 tcacatccga aacgccatca atatcggtag ttttctcaga gagcacccat aattggtacg
     1561 agtacgattc tgcttcaatt ttgccaggga cactatacac taccggatta aaagccttca
     1621 cagcctgatc tcccattcct gtggggagaa cgtcaacatt tgaaatatat attttgtcaa
     1681 ggcgggctcc ctcttcgccg ttagcaatag ccaacgtatg atgtccggct ttaagattat
     1741 agcttttcac cttcacccat gtccacgcac cttttggcaa accatttacg tattcaaatg
     1801 agccatcatc cattttaaac cagtatgaat ccgattttag cgtagcgcaa ttcacccgcg
     1861 catagacata aaaagtggta tctgttttgg cagtaaaatc aaaataaatt gcatttgcac
     1921 tatctgtcga ggccgcggta gtgttattcg ttccgggctt aatagtcaca taattgttat
     1981 tagaagcggt tttatcagta acaatattcc agtttgcacc caatttcgag cattctggtt
     2041 cataataata gttctcaggt tcaaaaacct tagctttaac tcccattaat gaaagcattt
     2101 ctgcggcgta tcttgtacca agtttccggt aaccatctga ggtgaagtgc ccccaatctc
     2161 cggttaatcc ttcggcggaa ataatatgtg cagtaggaac gacattagga agctgattga
     2221 caatgggatt catatgtaga aacattccgg tatacaatac ttctcctgac aaaagtggca
     2281 ccgtatcggc actcagtgaa agctcgctca acatatcgtt gtaaactttt tttacatact
     2341 ttggccagtt tacatctccg gtatttgctt ctccctgatg caaaagaata cctttaatta
     2401 ccccatcttg ttgtgccagt tttgctaaat ccatcagatg tttacgcgga tttccgccat
     2461 acgcctgaac ttttgctgag aaagtagcat cactcggatt gagatagccc tgataaagat
     2521 ctttatcaaa catccggatg tcgcacccgc caattgccac attgataacc cccacggtaa
     2581 tactgtccgg aaggtatttc accacggttc ttccgaaata atcggcaggc gaaagacctg
     2641 aggtacactg acacaatgga ggaagagccg gataccacgt acccttattc cgatccgtac
     2701 aatccagcga ctgaagaacc ttaaagcgac tgtcgaccat tttgtcctga gtttcgatag
     2761 ctccctgacc ttccatattc gactgcccga aacagatata gatatggaaa ttcgggtttc
     2821 gtgaaaatga gttcgcactt aacaagagta accccattag tacaagtgcc ttaatgtatt
     2881 ttttactggt tttcattgaa tatattttgc attgtttttt attaatcatt tttcatcagt
     2941 tattgttttc cggcatattc cagcacaaaa ccatatttat agggcttatt tcccggaatg
     3001 gt
//
LOCUS       DATDNM010000743         2292 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1050284, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000743 DATDNM010000000
VERSION     DATDNM010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1050284"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..708)
                     /locus_tag="VI413_12485"
     CDS             complement(103..708)
                     /locus_tag="VI413_12485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915486.1"
                     /translation="MKISKSEIWYLVQLLLTWTFINLTLNMFGLWFTKLLNPEEFVYL
                     DNIRYEFVKPLVIQSVIFGVCTAIAYLFMKKKKLALYCFVAFQFLVFHVVFFLNIKIN
                     HGMHFVSTFHNPGLQYLSYCGQYMVDILYLYFPVNGNFENGLFLPDNIGTFYIHWILL
                     NIVYYFGLTWLAVKAVKYFFEKSDKEPVTEEEKEVAPEVKE"
     gene            complement(806..2089)
                     /locus_tag="VI413_12490"
     CDS             complement(806..2089)
                     /locus_tag="VI413_12490"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007561674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HEY6915487.1"
                     /translation="MTYSETLQYLYDRLPVFHHVGGSAYKPGLDNTIQLMSALKNPHT
                     RYRTIHVAGTNGKGSVSHFLASVLQCAGYKVGLYTSPHLVDFGERIRVNGMMIDEQYV
                     VDFVEDHKALFDKIKPSFFEATMAMAFNYFADSEVDIAVIEVGLGGRLDSTNIIQPGL
                     SVITNISFDHTGFLGDSLEKIAFEKAGIIKKGTPVIIGEALAETRPVFEAKASQEGAP
                     IYFAEELIEVSFVEYQYAKTRVKTSDDKSYLVGLTGMYQLKNIATTLTAIEELKKQKL
                     NISEDCITKGLEFVTEITGLRGRWQVLQQNPTVVADTGHNVAGIQCVVDQLKTQQFET
                     LRIVIGMVNDKDISSVLAILPATARYYFTQANISRALSAEELKEKAQSYGLYGLSYSS
                     VEQAVHAAISESGTEDFVLIGGSNFVVGEALPLFN"
BASE COUNT          701 a          478 c          387 g          726 t
ORIGIN      
        1 tataaaataa aatctgcctg attttattat aaatacataa caataaaggc tgaatatcag
       61 attgatgttc agcctttatt atacctatat gcattttaaa atttactctt ttacttctgg
      121 agcaacttct ttctcctctt cagtaaccgg ctctttatct gatttttcga aaaagtactt
      181 tactgccttt acagccaacc acgtaagtcc gaaataatac acgatattca acaaaatcca
      241 gtgaatataa aacgttccga tattatcggg cagaaacagt ccattctcaa agtttccatt
      301 tacaggaaaa tacaaatata atatatcaac catatattgc ccacaataac tcaggtattg
      361 caaaccggga ttatggaagg tggatacaaa atgcattcca tgattaattt ttatgttcag
      421 gaaaaatact acgtgaaaaa ccaaaaattg gaatgccaca aagcagtaaa gagccagttt
      481 tttctttttc ataaacaggt atgctatagc agtacacact ccgaatatta ccgattgaat
      541 tacaagtggt ttgacgaact catacctgat gttgtccaga tacacaaatt cttccggatt
      601 caatagcttg gtaaaccata atccgaacat attcaatgtc aggtttataa atgtccaggt
      661 caaaagaagc tggactaaat accatatttc tgatttagat atcttcattg taaataaaat
      721 ttatttatgt ctttaaattt ccattttttt gcgttgcaaa tttagcacaa ccaatttgaa
      781 tgccaataaa ttctggtcga taaatttaat taaataacgg caatgcttcg ccaacaacaa
      841 aattactgcc gccaattaat acgaaatctt ccgttccaga ctccgaaatt gcagcatgaa
      901 ctgcctgctc tacagaagaa taagacaatc cgtataaacc atagctttga gctttttctt
      961 tcagttcttc agccgaaagt gcacggctga tattagcctg tgtgaaataa tatcgggcag
     1021 ttgccggtaa tatcgcaagc acagaagaga tatccttatc atttaccata cctataacaa
     1081 tgcgcaacgt ttcaaactgc tgtgttttca gttgatcaac aacgcattgg attccggcca
     1141 cattgtgtcc tgtgtcggct accactgtgg gattttgttg caaaacctgc cagcgtccgc
     1201 gcaaaccggt aatttctgtt acaaactcta atcctttcgt gatgcagtct tcagaaatat
     1261 tcagtttctg ttttttcagt tcttcaatgg ctgtaagcgt tgtagcaatg tttttcaact
     1321 gatacatgcc cgttaaccca acaagatatg atttgtcatc cgatgttttt acccgtgttt
     1381 ttgcatattg atattctaca aacgaaactt caataagttc ttcagcaaaa taaatggggg
     1441 caccttcctg gctggcttta gcttcgaaaa caggacgcgt ttcggccaga gcttctccga
     1501 taattaccgg tgtacccttt tttattattc ccgctttctc aaaagcaatt ttctcgagtg
     1561 agtcacccaa aaatcctgta tggtcaaagc tgatattggt tattacagat aatccgggct
     1621 gtattatatt ggtactgtcg agccttcctc ccaacccaac ttctataact gcaatatcta
     1681 cttcgctgtc agcaaaataa ttaaacgcca tggccatggt tgcttcaaag aacgaaggct
     1741 ttattttatc gaaaagagct ttgtgatctt ctacaaaatc aacaacatac tgctcatcaa
     1801 tcatcattcc gtttacccgg atacgctccc caaaatcaac cagatgaggt gacgtataca
     1861 ggccgacttt ataaccggca cattgcagca ctgaagccag aaaatgtgat acagagcctt
     1921 ttccattggt tccggccaca tggatagtcc ggtatcgggt gtgtgggttt ttcaatgcgg
     1981 acattaactg aatggtgtta tccagtccgg gtttataagc cgaacctcct acatgatgaa
     2041 ataccggaag gcggtcgtaa agatactgaa gtgtttcaga ataagtcatt gctagtttat
     2101 ggtttatagc aggtagtacg tttttgaaat ggtctaataa ttattaacta taaactattt
     2161 actataaact actaactgcc gactatttag tattttcccc acgaaacaat ttcgttcatt
     2221 tcttttcttt ttttctcacg tggtggctgg ttggagtatc ccagcaatat aatgagcata
     2281 acccgtttat tc
//
LOCUS       DATDNM010000744         2235 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_196259, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000744 DATDNM010000000
VERSION     DATDNM010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196259"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1334)
                     /locus_tag="VI413_12495"
     CDS             complement(<1..1334)
                     /locus_tag="VI413_12495"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HEY6915488.1"
                     /translation="MSIKNYDGYFWCKFAPFPTKASSPLKKYLSSYWIRSAVFMMLQR
                     FSITMFGLVNFIVLIRHLSKPEMGVWAFFLVVTTLFETAKSNLLKNAHIKYVGSNGDE
                     KAAVASSSLLLNSSLTTLFILFLLFFAGSLSHWLGSGTELGHMLIWFIPGMICLIFFS
                     HLEAVSQSHLDFKSVFAGHFTRQLVFFLIILSQAILKIPFSLTQVVIYQSISLACGVI
                     VIFLFSRKHLLYMFNPSVKWIKELLGFGGYIFGIAITSNLFANLDQLMIGRFTSRLGN
                     VYSQSMVANYNAATRISAWVDVPSYSAAEILLPKVSQVDLSKGYYQVTYMYERMVAVL
                     LSFTTPIALFIFFFPKWVISMIAGAQYADAAFILQMYMLSALVKPIQNQAANVFLYIG
                     KARLCFFLNLLFLGVNSGLNYLCFIEFGAYGAAIGNVIGCVLGTIVWYTILQ"
     gene            1621..>2235
                     /locus_tag="VI413_12500"
     CDS             1621..>2235
                     /locus_tag="VI413_12500"
                     /inference="COORDINATES: protein motif:HMM:NF014305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6915489.1"
                     /translation="MKSRKLQLLIITNFLFVTSFCYSQVLTPRPTSISGTCGGYYEYL
                     PQGYSTNTSQNFPLIVAVHGIGEIGNGTTDLGNLLNCWTAIPRLIANGGFPVSVSVGG
                     QSFSFIVIAPQFNQWPYASDVNAVVDYAVSHYRVDQSRIYVTGLSMGGGSVWDFAGNY
                     PTKAAAVVPVCGAASSDPTRAQAIANAKLPVWATHNQNDPTVSVS"
BASE COUNT          682 a          457 c          485 g          611 t
ORIGIN      
        1 ctttgtaaaa ttgtgtacca gactattgtt cccaggacac aaccaatcac atttcctatt
       61 gctgcaccat aggctccaaa ttcgataaaa cagagatagt tgagcccaga attgactcca
      121 agaaacagaa ggttcaggaa aaaacaaagg cgagccttcc ctatatataa aaagacattt
      181 gccgcctggt tttgaatggg tttaacgagc gcagaaagca tatacatctg aagaataaag
      241 gccgcatcgg catactgcgc acctgcaatc atcgagatta cccattttgg aaaaaagaat
      301 ataaagaggg caatgggtgt agtgaaactc agcagaacgg caaccattct ttcgtacatg
      361 taagttacct ggtaataccc cttgcttaaa tctacctgag atactttagg caacaatatt
      421 tcagcggcag aataagaagg cacatcaacc catgcactaa tcctggtcgc ggcattgtag
      481 ttagcgacca tcgattggct gtagacgtta cccagccgtg atgtaaacct gccgatcatt
      541 aattgatcga ggtttgcgaa aagatttgag gtgatggcaa ttccgaaaat ataacctcca
      601 aaacccagga gttcctttat ccatttcact gatgggttga acatgtagag caggtgtttc
      661 ctactgaaca aaaaaatgac gatcactccg cacgcaagac ttatggattg atagattacc
      721 acctgtgtca gcgagaaagg tatttttaat atggcctggc tcaggataat taagaaaaaa
      781 accagttgtc ttgtaaaatg tcctgcaaat acagatttaa agtccaggtg agattgggat
      841 actgcttcca ggtgggagaa gaaaataaga catatcatac ccggaataaa ccatatcaac
      901 atatgtccta actcggtgcc ggaacccagc caatggctga ggctgcctgc aaagaataaa
      961 aggaaaagaa tgaacaaggt agtgagcgaa gaattcaaca ataatgagga agaggcaact
     1021 gccgcctttt catctccatt gcttcccaca tatttaatgt gtgcattttt gagaaggtta
     1081 gacttggcgg tttcgaataa tgttgtaaca acgagaaaga aggcccacac gcccatttca
     1141 ggcttcgata ggtgacggat gagtacgata aagttaacca agccaaacat tgtgattgaa
     1201 aagcgttgga gcatcatgaa aacagctgag cggatccagt atgaggagag gtattttttc
     1261 aagggtgatg aagctttagt aggaaaaggg gcaaacttac accaaaaata gccatcataa
     1321 tttttgattg acaagagtga aattaattga caatttttaa gttattttac aaatctgcga
     1381 ttctatcgat caaaccaccg tacctcctga agcgcctgaa tttctgtttc ctggttacaa
     1441 gaatctttta gttattggta taaacacgaa gacctaatag gaagttttac tagttacgac
     1501 ttcctaaagt ctagaacttg tactatagtt tatgactatg gttcatttta ctttagccta
     1561 gttgattttt ctgacggaaa tcgaccttgc gctgaagtaa aatccaaaat caacctattt
     1621 atgaaaagca gaaagttgca gcttctgatt atcaccaatt tcctatttgt taccagtttt
     1681 tgttattccc aggtccttac accccgtccc actagcataa gtggaacttg tggaggttac
     1741 tatgaatacc tgccccaggg ttactccacc aacacgtcgc agaattttcc tttaattgtg
     1801 gctgttcatg gaattggaga gatcggtaat gggaccaccg acctcggaaa tcttttgaat
     1861 tgctggactg ccattccaag gcttattgct aatggaggtt ttccagtttc tgttagtgta
     1921 ggagggcaaa gctttagttt tattgttatt gctccccagt ttaaccaatg gccttatgcc
     1981 tcagatgtga atgcggtggt cgattatgcc gtttcacact acagggtaga tcaatcaagg
     2041 atctatgtca cgggtcttag tatgggtgga ggatccgtat gggactttgc gggtaactat
     2101 cctacaaaag ctgctgctgt tgttcccgtg tgtggagctg caagttctga tcctacaaga
     2161 gcgcaggcca tcgccaatgc aaagctgccg gtatgggcca ctcacaacca gaatgatccc
     2221 actgtctctg tatca
//
LOCUS       DATDNM010000745         2734 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1691317, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000745 DATDNM010000000
VERSION     DATDNM010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2734
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1691317"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2108)
                     /gene="ileS"
                     /locus_tag="VI413_12505"
     CDS             complement(<1..2108)
                     /gene="ileS"
                     /locus_tag="VI413_12505"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005793950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEY6915490.1"
                     /translation="MMKKFKEYSGLNLSDINKEMLSQWSKKDIFHKSIETREGKPSFV
                     FYEGPPSANGLPGIHHVMGRTIKDVFCRYKTMQGFQVKRKAGWDTHGLPVELGVEKAL
                     GITKEDIGKTISVDDYNAACRKDVLKYTKEWEDLTTQMGYWVDMKDPYITYDNRYIET
                     LWWLLKQLYNKKLLYKGYTIQPYSPAAGTGLSTHELNQPGCYRDVKDTTCVAQFKLKN
                     EENTYFLAWTTTPWTLPSNTALCVGPSIDYVKVKTQNPYTKDVCNLILAESLLGAVMG
                     KNEYEILDRKKGSELAGIEYEQLIPWVNPGEGAFKVITGDFVTTEDGTGIVHIAPTFG
                     ADDDRVAKQNGVPPLLLIDKDGNRQPMVDRTGKFFKVEDLSAEYVASNVNVNLYAEYA
                     GRYVKNAYETSPAPTPTGDTDPVTTLDIDLCVMLKQQGLAYKIEKHTHNYPHCWRTDK
                     PVLYYPLDSWFVKTTDCREEMMALNDTINWKPQSTGTGRFGKWLENLQDWNLSRSRYW
                     GTPLPIWRTEDGNEEICIGSVEELMAEIDKSIAAGFMTENPYKNFKVGEYTAENYAVK
                     NIDLHRPYVDGIILVSKCKKPMKRELDLIDVWFDSGAMPYAQLHYPFENKELIDNATN
                     FPADFISEGVDQTRGWFFTLHAISTMVRGSVAFKSVISNGLVLDKNGNKMSKRLGNGV
                     DPFSTIEKYGSDPLRWYMMT"
     gene            complement(2480..>2734)
                     /locus_tag="VI413_12510"
     CDS             complement(2480..>2734)
                     /locus_tag="VI413_12510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915491.1"
                     /translation="EGSYTGSQYRFDTSKTPGYMFMAAMVEKKFGDHISVVLNGENLL
                     NYRQSNVESLYTGTISNPTFNPLWAPIDGRIINLSLKYQL"
BASE COUNT          705 a          585 c          593 g          851 t
ORIGIN      
        1 ttggtcatca tgtaccagcg aagcggatcg gaaccgtatt tttcaattgt tgagaacgga
       61 tcgacgccgt tgcccaaccg tttcgacatt ttattgccgt ttttgtcgag caccaagcca
      121 ttagaaataa cacttttgaa agccaccgaa ccacgaacca tggtactgat agcgtgcaac
      181 gtaaagaacc aaccacgcgt ttggtctaca ccttccgaaa tgaaatcggc cgggaagttc
      241 gtcgcattgt caatcaattc tttgttttca aacggataat gcaattgtgc gtaaggcatg
      301 gcgcccgaat cgaaccaaac gtcaatcagg tcgagttcgc gtttcattgg tttcttgcat
      361 tttgaaacga ggataatgcc atccacatac ggacgatgca agtctatatt ttttaccgcg
      421 tagttttcgg cagtatattc acccactttg aaatttttgt acggattttc ggtcataaat
      481 ccggccgcaa tagatttatc aatttcggcc atcagttctt ccaccgagcc aatgcagatt
      541 tcttcatttc catcttccgt gcgccagata ggaagcggag ttccccagta acggctgcgc
      601 gataagttcc agtcctgcag gttttccaac catttgccaa aacggcctgt tccggtcgat
      661 tgtggtttcc aattaatggt gtcgttcagt gccatcattt cctcgcggca atcggtggtt
      721 tttacaaacc aactgtccaa cgggtaatac aacacgggtt tgtccgtacg ccagcaatgt
      781 gggtagttgt gcgtatgttt ttcaatttta taagccagcc cctgttgttt caacattaca
      841 cacaggtcaa tatccagtgt ggttacaggg tctgtatctc ctgttggcgt tggagcaggc
      901 gatgtttcgt aagcgttttt cacgtaacgg cctgcatatt ctgcatacaa gtttacgttt
      961 acattcgaag cgacatattc ggcactcaaa tcttccactt tgaagaattt acctgtgcgg
     1021 tcaaccattg gctggcggtt tccatctttg tcgataagca aaagcggtgg aacgccgttt
     1081 tgtttggcca cgcgatcatc gtctgctcca aaagtaggag cgatgtgcac gataccggta
     1141 ccatcttcgg tagttacgaa gtcgccggtg ataactttga aagctccttc gccaggattt
     1201 acccagggaa taagttgctc gtattcgatg cctgccagtt cagaaccttt tttgcgatcc
     1261 aggatttcat attcgttttt gcccattacc gcgccaagca ggctttcggc caaaatcaaa
     1321 ttgcaaacgt ctttagtata tggattttgc gtttttactt tcacgtaatc gatagacggg
     1381 ccaacgcaca aagcggtgtt cgaaggcaat gtccatggag ttgttgtcca ggctaaaaag
     1441 tacgtgtttt cttcgttttt cagcttgaat tgtgccacac aggtagtgtc tttcacgtcg
     1501 cggtagcaac ccggttggtt gagttcgtga gtagaaagtc ctgttccggc agccggagaa
     1561 tatggctgaa tagtgtagcc tttatagagt aattttttgt tgtaaagttg tttgagtagc
     1621 caccaaagtg tttcgatgta gcggttgtcg taagtgatgt acgggtcttt catatccacc
     1681 caataaccca tttgggtggt caggtcttcc cattctttgg tgtatttcag tacgtctttg
     1741 cggcaagcag cgttgtaatc gtctacactg atggttttgc caatgtcttc tttggtaatt
     1801 cccaatgctt tttccacgcc aagttctacc ggaagcccgt gtgtatccca gccggcttta
     1861 cgttttacct gaaagccctg catggttttg taacggcaaa aaacgtcctt aatcgtacgt
     1921 cccatgacgt gatgaatgcc cggaagcccg ttggccgaag gcggtccttc ataaaaaacg
     1981 aacgaaggtt ttccctcgcg ggtttcgata cttttatgga aaatgtcttt tttgctccat
     2041 tgcgacagca tttccttgtt gatgtccgat aaattcaggc cggaatattc tttaaatttt
     2101 ttcatcagaa aaacgaatta cacgaattaa aacgaattac tcagattttg agttcgtacc
     2161 aactaattaa ccgatatatc tttaacggat aactaattca ggggtgcaaa aatacaaaaa
     2221 ataaatgaaa agaaaaagag aagcgagtga ttgagtttcg ttgagtaaaa accgtgtgta
     2281 attcaatttt acttcgtctt tttagcgaaa aatgtctatc aaaatgcact aagtacatac
     2341 aataaattag tttgtattta atgtcagata attttttcta ttctgatgac acctatcagt
     2401 ttttttacct gttaggggag ttctaaagaa tataaactaa ttcccatgtt gtacttgtgg
     2461 gtcttcttca aataaatcgt tataactgat atttcaaaga aagatttata attctaccat
     2521 cgataggtgc ccaaagaggg ttgaaagttg gattgctgat tgttccggtg tataaagatt
     2581 ctacattgct ctgacggtag tttaacaaat tttcgccatt gagaaccaca ctgatatgat
     2641 cgccgaattt cttttcgacc atagctgcca tgaacatgta tccaggagtt ttggatgtgt
     2701 cgaaacgata ttgcgagcct gtgtaggaac cttc
//
LOCUS       DATDNM010000746         7204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_303657, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000746 DATDNM010000000
VERSION     DATDNM010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7204
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303657"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..2890
                     /locus_tag="VI413_12515"
     CDS             173..2890
                     /locus_tag="VI413_12515"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915492.1"
                     /translation="MKKNLHYLRSFLMLFVLLHAFSARAAVIPYLPALQNFGGTSVDL
                     VTFSPIIGDYTLEVQGTVDTPISVAGGVITYTPTTNSVVRFAQKSGKISVYEGNVFKT
                     TLTPNSVAITYPTVYDDANLSGIYNAANLIANPGFETTSGPNLNTATDQRYAAATWML
                     SSTGAFPSFTSSGVRVNVDNASYVTGREGLATLLWRNDGATANNTNTYFYQSLGSKLK
                     ANTTYKIKFHVLTHNQGKSCNWRVGVGSTSGGYQYSLNVFNTVSTNFTSKSYEYTFTT
                     PSVVAGETFFTIGNNGDATSTNWTIIHFDRITLVEGSAPKGITGVTTASFLDGTAYAP
                     ENVPVDFSAGDSYDMTSFIKNASFEDVQADKQQTIPNWTKTGTANSEYCTRNDAGPAG
                     FKTGNVYFQYWSGATPKPDFSISQIITGLPNGKYRVTAAAGGDAGTTGTYVYAQDNQT
                     QVTSTGDFSAEAVVLDGSLTIGFKSVNRSVSWAFADNFRLYYLGVSADPVLTLSATSF
                     YYDANNLTKTFNVSGANLTGDVTLTAPEGITLSKTTLTAAEAQAGVNITAQFTGSASI
                     KGGTISVASGVLTKSISVTALYGDGGCFSPLYNNRTNLVTEPFCNDRSKFGGWGNVGI
                     SELTKFCGERSLKVFGGSLDVSVASGAAIASNKTYRVKAKIFVPGAHTAKFGLFLIGN
                     TADVDVYNSTTNDAWETADFTFKTATVGAGGVFFQRSSGTDSVYIDNYEMYEVAEPTV
                     RVKYVDAADVNTSIKADRVYTATWGTTLANYLTIGKTYSALTADKAVVTYGGYNYDYD
                     NTSVENVTVAEGENVIVLKFIKGLSTGNVNLGNNEVAVYPTMTDENVNVSLSGKTGTI
                     RVFDVAGRIVATKVANSTKEVVSLPSSGVFFIEVNSNNVTKTFKVIRMK"
     gene            3024..3434
                     /locus_tag="VI413_12520"
     CDS             3024..3434
                     /locus_tag="VI413_12520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915493.1"
                     /translation="MKKGFKMILFFSLVVLASCEKNEPAMNDSEKLIGSWVNSVLIDT
                     LWKYERAATLKDNNYGISFKEGQVFVERKNAGWCGTPPVAYGDFAGTWTKNDSVINIT
                     VAYWGGLVSYQWKVISVDKNNLVVYKIKEDYQSK"
     gene            complement(3518..5545)
                     /locus_tag="VI413_12525"
     CDS             complement(3518..5545)
                     /locus_tag="VI413_12525"
                     /inference="COORDINATES: protein motif:HMM:NF019113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEY6915494.1"
                     /translation="MKKILALGTFFTFALTIFAQQLPTKGEIINKMKLVNDYWISQNA
                     VPGNNQWARAVYFTGNMDFYKIYPKDTYLQYANLWANNNGWALNGGSSTRNADNQTCG
                     QVYIDLYNLDAVKVPSKIAAIKTSIDNMVYSSISNDWSWIDALYMAMPVFARLGALTN
                     DSIYFQRMYDIYTNTKVTRGLLNTTEGLWYRDGNYKPPYQTTNGQDCYWSRGNGWVVG
                     AHVRVLQQLPQTNSHRSEYIQTLQQMAVALKDRQRPDGFWNPSLDDPDEYTGPETSGT
                     AFFTYGLAWGINNHLLDSATYAPVVVKAWNGLVSTAVQPNGFLGYVQGVGAAPALASA
                     NTTQDFGVGGFLLAGTEVLKMASGVIPTPSNFAMKSLKVVDNTHIKVSFTKKINPATA
                     LEAANYSINNGISISAVTAGENDSTSILTINALSYGSYQLQINNISGSDGSQIENGET
                     KTFVYTGIAAVTASGFEPGTSNTADKTLDYDFGTRWSCNGNGQWILYDLGETKLVSSV
                     NIAFFNGNVRKGIFSMYLSSNLTDSIQVFDGSSSGKSAALENYDFTDQPARYVKIIGF
                     GNTQSSWNSITETRINWTNLASGTHSVTQNSLKIYPNPLLGNELYINISNNSGRNELI
                     ISDMCGKRVFTQMLTSTSKTVKISNLKLSAGAYTVVLTNAIESNSLLLLVK"
     gene            5907..>7204
                     /locus_tag="VI413_12530"
     CDS             5907..>7204
                     /locus_tag="VI413_12530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008620668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915495.1"
                     /translation="MACLVISAQAQIIVGGTEDAVSSPTEGVITSNFVNEATMKGDLL
                     QMLANFMTYVKADYLDAAATNSLGEACGYFKGENSAGSNEQGVRPNADLSMICAFLYK
                     YGKDKVTLPAGVTWDDVNNMAKKSLIFAYSTHKANKFKTCAAGDYWGSTSTSDYVWES
                     SLWSMSVAYSAFFQYDQLTAAQKQYVQNLVKAECNYELGRTIPTGFSGDTKAEENGWE
                     TNILSCALGLYPNDALAPQWYDRLRAFAINCYSQLNDATDASVIDPDYNTKTVKDLYL
                     GKNLYDDYSLQNHNYFHTSYQNVVMQELGESFLALKMFQTGISGTEKWKTNALMHNNQ
                     NVMDKVLNKLALADGELAMPNGNDWSLFLYDQIASYATMSCFLKDPNALMLENLAYKN
                     IKARQATTTDGSWLLRADVGARRMGVQAHRVMMTWLMHEMA"
BASE COUNT         2092 a         1361 c         1576 g         2175 t
ORIGIN      
        1 tagtgcaagt tgggatggag attctgaaat agcttgaaat gttggctttt gcgaggattg
       61 tcttctttat tgactttttt tttacccatg caggttttga ttaaaattat ctttgcattg
      121 tatcaattac aaaaaaatca attagaaata ataacattta aatttaatta tcatgaaaaa
      181 aaacttacat tatttaaggt cattccttat gttattcgtt ttgctgcatg cattttctgc
      241 gcgtgctgca gttattcctt atttgccagc tttgcagaac tttggaggca cttcagttga
      301 tttggttact ttttccccta taattggtga ctatacgctt gaagttcagg gtacagttga
      361 tacaccgatt tctgtagcag gcggagtcat aacttacact cctacaacaa atagtgttgt
      421 gcgctttgct caaaagagcg gtaaaatatc tgtatatgaa ggaaatgttt ttaaaactac
      481 attaactcct aattctgttg cgattactta tccgactgtt tatgacgacg caaatctttc
      541 gggaatttat aatgctgcaa accttattgc aaatccgggt tttgaaacta ctagtggtcc
      601 aaatttaaac acagctactg atcaacgata tgctgcagcc acttggatgc tttcgtcaac
      661 aggtgctttt ccaagtttta cttcatccgg agttagggta aatgtagata atgcttctta
      721 tgtaaccggt cgtgaaggtc ttgcaacact tttatggcga aatgatggtg caactgctaa
      781 taatacaaat acatatttct accaatcatt aggtagcaaa ttaaaagcaa ataccacgta
      841 taaaattaaa tttcatgttc ttacacataa tcagggtaaa tcatgtaact ggcgtgtggg
      901 tgtaggctct acgtcagggg gatatcaata tagcttaaat gtatttaaca cggtgagtac
      961 aaattttaca tctaaaagct atgaatatac atttactact ccatcggttg tggcaggtga
     1021 gactttcttt acaattggaa ataacggaga cgcaacaagt accaactgga caataattca
     1081 ctttgatcgg ataactttag ttgaaggttc tgctcctaaa ggtataacag gagtaacaac
     1141 agcatcgttt cttgatggaa ctgcatacgc accggaaaat gttccagtag acttttctgc
     1201 aggcgacagc tatgacatga catcattcat caaaaatgca agtttcgaag atgttcaagc
     1261 agacaaacag cagactattc cgaattggac taaaaccgga actgcaaata gtgaatactg
     1321 tacacgtaat gatgccggtc cggctggttt caaaacaggt aatgtatatt tccagtactg
     1381 gagtggcgct actccgaaac cagatttctc aatttctcag attataacag gcttacctaa
     1441 cggcaaatac agggtaacgg cagcagctgg tggagatgca ggtacaacgg gtacatacgt
     1501 atatgcacaa gataatcaaa cgcaagtaac aagtaccggt gatttcagtg cagaggctgt
     1561 ggtgctggat ggttcgctta ctattggctt taaatctgtt aaccgtagcg taagctgggc
     1621 ttttgccgac aatttccgtc tttactattt gggtgtatca gctgatcctg ttcttacttt
     1681 gtctgctacc agcttttatt atgatgcaaa taatctgacc aaaacattca atgtaagtgg
     1741 tgcaaacctt accggagatg taacgcttac tgccccggaa ggaattacac ttagcaaaac
     1801 tacactcact gcagccgaag ctcaggcagg tgtaaatatt actgctcagt ttacaggaag
     1861 tgcttcgata aaaggtggta ctatttcagt ggcatcaggt gtacttacca aatcaatttc
     1921 agttacggca ctttatggag atggtggctg cttttcacca ttgtataaca acagaacaaa
     1981 ccttgtaact gaacctttct gcaacgaccg ctctaaattc ggtggctggg gcaatgtggg
     2041 cattagtgaa ttgactaaat tctgtggtga gcgtagcttg aaagtatttg gtggttcgtt
     2101 ggatgtttct gtagccagcg gtgctgctat tgcttcaaac aaaacttatc gggttaaagc
     2161 taaaatattt gttcctggtg cacatacagc aaaattcgga ttgttcctga ttggtaatac
     2221 agctgatgtt gatgtttata actccacaac taacgatgca tgggaaactg ctgactttac
     2281 atttaaaact gctaccgtag gtgcaggagg tgtattcttc caacgttcat ctggtactga
     2341 tagtgtttac attgataatt atgaaatgta tgaagttgcc gaacctactg ttcgtgtaaa
     2401 atatgtagat gctgctgatg ttaatacttc gattaaagct gaccgtgttt acacagctac
     2461 ctggggaact accttagcta attatttgac tatcggaaaa acatattctg cccttacagc
     2521 cgataaagct gttgttacat acggaggata caactatgac tatgataaca cttcagttga
     2581 aaatgttact gtagccgaag gcgaaaatgt aattgtattg aaattcataa aaggtctctc
     2641 aacaggaaat gtaaacttag gcaataacga agtggctgta tatccaacaa tgacagatga
     2701 aaatgtaaat gtttcattga gtggaaaaac cggaacaatc agagtatttg atgttgcagg
     2761 aagaattgta gcaactaaag ttgcaaattc aacaaaagaa gttgtatcat tgccttcaag
     2821 tggagttttc tttattgaag ttaatagcaa taatgttaca aaaacattca aagtaatcag
     2881 aatgaaataa ggtttgatta ttttctaaat aatcaaaggc tgcttcaatt aattgaggca
     2941 gccttttttg tttttacatt accagtaatg caacgaatat cactaatccg ccatctataa
     3001 aatgaacatc aaatgaatgg aatatgaaga aaggatttaa aatgattttg tttttctcac
     3061 tggtggtatt ggcttcgtgt gagaagaacg aacctgcgat gaatgattct gaaaagctga
     3121 ttggttcgtg ggttaattcc gtacttattg atactctttg gaaatacgag cgggccgcaa
     3181 cattaaaaga taataattat gggatttctt ttaaagaagg gcaagtattt gttgagagaa
     3241 aaaatgcagg atggtgcgga actcctcctg ttgcgtatgg cgactttgct ggaacctgga
     3301 caaagaatga ttcagtgatc aatattactg ttgcatactg gggtggtttg gtgtcctatc
     3361 aatggaaagt aatatctgtt gataagaata atctggttgt ctataaaata aaagaagact
     3421 atcagagtaa ataacctata attctctttt tgctatttca caaacaaggc tggctccaaa
     3481 agagccagcc ttgtttgtga aatgtatcgg tggttattta ttttaccagt aacaataacg
     3541 aattactttc gatggcattc gttaatacta ctgtgtaagc gcctgcagac agtttgagat
     3601 ttgagatttt cactgtcttg cttgtactcg tgagcatttg cgtgaaaact ctcttgccac
     3661 acatgtcgga gataatcaac tcgtttctac ctgaattatt tgatatatta atgtataatt
     3721 cattgcccaa taatggattc ggataaatct tcaggctgtt ttgagttacg gaatgagttc
     3781 ccgaagcgag gtttgtccag ttgatgcgtg tttcggtaat gctgttccag ctactttgtg
     3841 tgtttccgaa tccgatgatt tttacgtaac gggcaggttg atctgtgaaa tcgtagtttt
     3901 ccagtgccgc cgattttccg ctcgacgagc catcgaagac ctgtatacta tctgttaagt
     3961 tggaggaaag atacatgctg aaaatgccct tacgcacatt accgttgaaa aatgcaatgt
     4021 tgacagaact aaccagtttg gtttcgccca agtcgtacag aatccactgt ccattgccgt
     4081 tgcacgacca gcgtgtgcca aaatcataat cgagtgtttt gtcggctgta ttgcttgtgc
     4141 cgggctcgaa accactggca gttactgcgg caatgcctgt ataaacaaat gtttttgttt
     4201 cgccgttttc aatttgcgaa ccgtctgaac ctgatatgtt gtttatttgt agctgataag
     4261 aaccatagct taacgcgttt attgtaagta tagaagtgct gtcattttca ccggcagtga
     4321 ccgccgaaat ggaaatgccg ttgttgatcg aataattagc tgcttcaaga gcagttgcag
     4381 ggtttatttt cttagtgaat gagactttaa tgtgtgtatt atctacaact ttcaacgatt
     4441 tcatggcgaa attggaaggt gttggtataa ctccgcttgc cattttcagg acttcggttc
     4501 cagccagaag aaaaccaccc acgccaaaat cctgtgtggt attagccgag gcgagggcag
     4561 gagcggctcc cacgccttgt acgtaaccca gaaaaccatt cggttgaacg gcagttgaaa
     4621 ccaatccgtt ccatgctttt accactacgg gagcataggt tgccgagtcg agtaaatgat
     4681 tgtttattcc ccatgccagt ccgtaagtaa agaaagccgt tccactggtt tccgggcctg
     4741 tgtattcatc gggatcgtcc agactgggat tccagaagcc atccgggcgt tggcgatctt
     4801 tcaatgctac ggccatttgt tgcaaggttt gtatgtattc cgaccggtgc gaattggttt
     4861 gaggcaattg ttgcaaaacg cgtacatgcg ccccaactac ccaaccattt ccgcgcgacc
     4921 agtagcaatc ctggccattt gttgtctggt atggcggttt gtagtttcca tccctgtacc
     4981 aaagcccttc ggtggtatta agcaacccac gcgttacttt ggtgttcgtg taaatatcgt
     5041 acattctctg gaagtaaatg gaatcgtttg tcagcgcacc caggcgggca aatacaggca
     5101 tagccatgta taatgcgtct atccacgacc agtcgtttga tatgctgcta taaaccatat
     5161 tatcgatgct tgttttgata gcagcaatct ttgaagggac ttttacagca tccagattgt
     5221 ataaatcgat ataaacctgt ccgcatgtct ggttgtcggc attacgggta gaggagccgc
     5281 cattcagtgc ccagccgttg ttgtttgccc aaaggttggc gtattgcaaa taagtatctt
     5341 tcggataaat tttgtagaag tccatgttgc cggtgaaata aaccgcccgt gcccattggt
     5401 tatttccggg gaccgcattt tgcgaaatcc agtaatcgtt taccagtttc atcttgttta
     5461 ttatttcccc tttggtagga agctgttggg cgaagatggt cagtgcaaat gtgaagaaag
     5521 tgccgagggc caggattttt ttcattggta tgaatagaaa gcgaatttta gatatgtttc
     5581 agtgttatgg taatctgtta caaatgtaca gattcttagt tttaccggtg attaaaattc
     5641 agtcaataaa gttcaattat tagattccca gatatctctt ggagtgaaaa ccataagatt
     5701 aatatctcca ttattgaccg ttttttatac tgaaacaagg aaattatgga atatatttgt
     5761 aatctgaaac gagcattaat aatggtataa tccaaagacc atgttcattt gcgagttcca
     5821 tgcgacaact gttaaaaaat aaaaatgaac gcatgaaata aaaccgtgta aataaatata
     5881 tgagaaaatt aaaactactc tttattatgg cctgtcttgt gatttcggca caggctcaaa
     5941 ttattgtcgg aggtactgag gatgcagtat catcgcctac ggaaggtgtt attacttcca
     6001 actttgtcaa tgaagcaaca atgaaaggcg atctgctgca gatgctggcc aacttcatga
     6061 cctatgtaaa agccgattat ctggatgctg ctgcaaccaa tagtttaggt gaagcctgtg
     6121 gctactttaa aggcgaaaac tctgcgggaa gtaacgaaca gggcgtaaga cctaacgcag
     6181 acctttcgat gatatgtgca tttttgtata agtacggcaa ggataaagtt accctgcctg
     6241 caggagttac ctgggatgat gtgaataata tggccaaaaa aagtttgata tttgcgtatt
     6301 ctacacataa agctaataag tttaaaacct gtgctgccgg agattactgg gggtcaacaa
     6361 gtacctctga ttatgtgtgg gagagttctt tatggtccat gtcggtagct tattcggcct
     6421 ttttccaata cgaccagctg actgctgcgc agaaacaata tgtgcagaac ctggtaaaag
     6481 cagaatgtaa ttatgagttg ggacgcacta tacccacagg cttttcgggc gacacaaaag
     6541 ctgaagaaaa cggttgggaa accaatatct tgtcctgcgc cctgggattg tatccaaacg
     6601 atgcattggc tccgcaatgg tacgaccgct tacgcgcttt tgccataaac tgctattcgc
     6661 agctaaacga tgccactgat gcttcggtta ttgaccctga ctacaatacc aaaacggtaa
     6721 aggatcttta tctgggtaaa aacctgtatg acgattacag cttgcagaat cacaattatt
     6781 tccatacctc ttatcagaat gtagttatgc aggaattagg cgaaagcttc ctggcactga
     6841 aaatgttcca gaccggaatt agcggtactg aaaaatggaa aacaaatgcg ttgatgcata
     6901 ataaccaaaa tgtgatggac aaggttctca acaaactggc tttggccgat ggcgagctgg
     6961 ctatgccgaa tggtaacgac tggagcttgt ttttgtacga tcagattgct tcttacgcaa
     7021 ccatgtcttg tttcctgaaa gacccgaatg cattgatgct ggaaaacctg gcctacaaaa
     7081 atatcaaagc ccggcaggcg actactactg atggaagctg gttgttgcgt gccgatgtgg
     7141 gtgcacggcg tatgggtgtt caggcacacc gcgtaatgat gacctggctt atgcacgaga
     7201 tggc
//
LOCUS       DATDNM010000747         2212 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_944037, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000747 DATDNM010000000
VERSION     DATDNM010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_944037"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..670)
                     /locus_tag="VI413_12535"
     CDS             complement(<1..670)
                     /locus_tag="VI413_12535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005793974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6915496.1"
                     /translation="MKKAIILGATSGIGRCLAKLLVDDGFVVGITGRRTYLLEEIQSE
                     KPDSYFIESFDIADTESVAEHLQHLVDQLGGLDLLVICSAVGNPNDLLDYEVEKRTIA
                     TNVSGFTAVCDWVFNYFKEQKQGQLAAISSIAGLRGNRQSPAYCATKAYQINYLECLR
                     NKAVKSGLSIFITDIRPGFVDTRMAKSEIMFWVAPVDKAAAQIYKAICSKRRVAYVTK
                     RWKLI"
     gene            complement(917..1420)
                     /locus_tag="VI413_12540"
     CDS             complement(917..1420)
                     /locus_tag="VI413_12540"
                     /inference="COORDINATES: protein motif:HMM:NF019911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEGA domain-containing protein"
                     /protein_id="HEY6915497.1"
                     /translation="MKKSTRIISLLLAVVIFFASCSSSTMIVSNPPNAKLYLDGELVG
                     QTPYKHTDSKIVGTTTTVKIEKDGYKPLFTDITKNEEADVGAIIGGLLVWVPFLWTLK
                     YKPTHSYVLDPINVDDNINSNTQQTQSTPKSKTEMLRELKQLLDEKIITTEEFEKEKA
                     KVLEMNN"
     gene            complement(1736..2029)
                     /locus_tag="VI413_12545"
     CDS             complement(1736..2029)
                     /locus_tag="VI413_12545"
                     /inference="COORDINATES: protein motif:HMM:NF018045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HEY6915498.1"
                     /translation="MKKNLLKLAFVFGVCVMMTSCYTVTATIGNGSQTGEKTVGHNHF
                     LIAGLIPVGTANVKEMAGTAKDYQITVTHTFVDGLLSAITGGLYAPTTTIVKK"
BASE COUNT          712 a          431 c          316 g          753 t
ORIGIN      
        1 ctatcagctt ccaacgttta gtaacgtatg caaccctgcg ttttgagcat atagctttat
       61 atatttgtgc ggcagcttta tccacaggag ctacccagaa cattatttca ctcttagcca
      121 ttctcgtatc tacaaacccg gggcggatat cagtgataaa aattgacaaa ccggatttta
      181 cagctttatt tcgtaaacat tccaggtagt ttatctgata ggcttttgtt gcgcaatatg
      241 ccggagattg cctgttacca cgcagcccgg caatagaact gattgcagcc aactgtcctt
      301 gcttttgttc tttaaaataa ttaaataccc agtcgcaaac agcagtaaaa ccactcacat
      361 tggtagcaat agttcgtttc tcaacttcat aatccaacaa atcgtttgga ttacctacag
      421 ccgaacaaat tacaagtaaa tcaagtccac cgagttgatc cacaagatgc tgcaaatgtt
      481 ctgcaacact ttccgtatca gctatatcaa aagattctat aaaataacta tccggttttt
      541 ccgattggat ttcttccaat aaataagttc ttcggcctgt aattccaaca acaaacccat
      601 catccaccaa caatttagct aaacatcggc caatgccaga ggtagcacct aagattatcg
      661 cttttttcat aattctatta tttttcctaa gaatatattt gtttgctttt aatcttttac
      721 gactccaaaa atacaaatca ttactaacac tgcctacaat taagacaatt attctttaat
      781 aaaataaaaa aatatttcgt tagccttttc atggataaaa aaaaccgttc aggaagctat
      841 gttcaggaac ggtttttcgg aaaataaaag ttattttgca gtacttaaag atatttacaa
      901 aacaaatgag caattactaa ttattcattt caagcacctt agctttttct ttttcaaatt
      961 cttctgtagt aataattttt tcatctaaaa gctgctttaa ctcacgaagc atttcagttt
     1021 ttgattttgg agtgctttgt gtttgttgtg tattagaatt gatattatca tcaacattaa
     1081 taggatccaa tacatagcta tgtgtaggtt tatatttcaa tgtccacaga aatggaaccc
     1141 aaaccaataa acctccaata attgccccta cgtcggcttc ttcgttttta gtaatgtcag
     1201 taaagagagg cttataccca tccttttcaa ttttaacagt agtagtagtt cccactattt
     1261 tggagtcagt gtgtttatat ggtgtttggc caacaagttc cccgtcaagg tataatttgg
     1321 cattaggtgg attacttaca atcatagtag aactggagca actggcgaag aagataacta
     1381 ctgccaacaa aaggctaata attcttgtac tttttttcat aatttatcat taactattaa
     1441 cttattttgg aaatcatatt ttatttgttt tattcttaaa tcttttgaga gaataaataa
     1501 aaattgaaat acctattgct aaaagaaaaa cgctacctgt caggtatcct ttaccatatt
     1561 ccgttaaact attgattagt tcaatacatt taatcaaaat atatccggcg taaagaataa
     1621 taaccataga taacaaaagt agaaagtatc tcatattgca ttatatttat ttgtttgcac
     1681 ctgattgaaa tgaggacgag tcagcaattt ctgaatcgtc cccaataatt caattttatt
     1741 tttttacaat tgtagttgtt ggtgcataca aaccacctgt aattgcagaa agtaaaccat
     1801 caacaaatgt atgtgttact gtaatttggt aatccttagc agtaccagcc atttctttaa
     1861 cattggctgt acctacagga attaaacctg caattaaaaa atggttatga cctacagttt
     1921 tttctcccgt ttgagaacca tttccaattg ttgccgtaac agtgtagcaa gaagtcatca
     1981 ttacacaaac tccaaaaacg aaagccaatt ttaataaatt ctttttcata tgattttttt
     2041 cttttttttg cctactcata agcttttcgg catccgcccc ctactctttt tcggattttc
     2101 gggtagctcc ggtcttatat tattgattta aaatcgcctc taaaaatagc atataacaac
     2161 gatcacactt ccgtagaccc atacctaaat gaaaaataaa ctttctctac ac
//
LOCUS       DATDNM010000748         2408 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_410077, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000748 DATDNM010000000
VERSION     DATDNM010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410077"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1260
                     /locus_tag="VI413_12550"
     CDS             <1..1260
                     /locus_tag="VI413_12550"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEY6915499.1"
                     /translation="DNESATIDLSLIAELSNISIFWEAAYAKSYKIESSLNGTDWTLL
                     KLENIATGGTTKCAVDNVKARYVRISMLERVSIAGKKYGFSIYEVEVNGHVLEQFPTI
                     QLAAIESKLHLPFAKTILDASQSGNPLKAEKLTYKWEQISGPAKVLIADPFSAISTVT
                     FKKEGDYKFKINVGNDGGSNSKEFVITVAPEKESSDFAYMKPATCSGMESAFTNACMA
                     VDGDSKTRWSSAFRNGEWWEVDTGHEVNPDSIVIVWEGAFARKFNIQVKCDDKQWREL
                     YATNSFSGGKSIIYNKEKLSFRQLKVNCTERATDYGSSFYSLKICGKRERTSNQSPVA
                     RAGFSSDKNGFVQLDGSKSYDKNKLDKLLYSWEQIAGPAVVQLGNVNSATVSGFFPKP
                     GYYFFKLKVDDGKDVDFDILKVSFPGK"
     gene            1275..>2408
                     /locus_tag="VI413_12555"
     CDS             1275..>2408
                     /locus_tag="VI413_12555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915500.1"
                     /translation="MKKSLVTLIFISLATIVAAQNAIQLGAGSYAEYPPDSVANEDGY
                     FAKKYSWFRDNWNNLYLHENARHKPLPTNKWWTNYVFAQYGGEAWAYPQAVSADNEGI
                     NIKIPNGFQGGGMITMPMLEVKGASQLQVTDEAIVFADFESSTYPTGWTVGANPAFSG
                     PVALADINQSPTPNGFVGTRFVNSYKGNEGKLSLTSTSFVISKNYIKLRVGGGNYPTD
                     TYVGLFINGTRVLSETGANSANLTARTWDVSAYMGQTAEIRIVDNSTGGWGFIMCDDI
                     IFSNSTYSGTGYPTDFAPKSSNVYDWTDLGFTFRNEDTVGRIMDVTLVHGVPFTWIEL
                     KNLVPILKPGVVSKIYDSNGNEVTTFPVQLNVCTMEFGGRIYGI"
BASE COUNT          711 a          447 c          563 g          687 t
ORIGIN      
        1 gataacgaat ctgccaccat cgatttgtcg ttaattgccg aattgagcaa tatctccatt
       61 ttttgggaag ctgcttacgc aaaaagttac aaaatagaaa gttcgctcaa tggaaccgac
      121 tggactttgc ttaaactgga gaatatcgct acaggcggca caaccaaatg tgctgtggat
      181 aatgtaaaag ctcgctacgt gagaatttct atgttggaac gtgtttccat tgccggtaaa
      241 aaatatggtt tttccattta cgaagtggag gttaacggtc atgtattgga gcaatttccc
      301 actattcagc tggctgcaat cgagtcgaag ctacatttac cctttgctaa aaccattttg
      361 gatgcttcgc aatcgggcaa tccgctgaaa gcagaaaaac ttacctacaa atgggagcaa
      421 atttcaggtc ctgccaaagt gcttattgct gatccgtttt cggcgatttc aacggtgact
      481 tttaaaaaag aaggagatta taaatttaaa attaatgtag gaaacgatgg aggctcgaac
      541 tcaaaggaat tcgtaataac tgtagcaccg gaaaaagaat catctgattt tgcttatatg
      601 aaaccggcaa cttgttccgg catggaatcg gctttcacga atgcatgcat ggcggtggat
      661 ggcgatagta aaacccgttg gtcgtcagca ttccgaaacg gcgaatggtg ggaggtagat
      721 accgggcacg aagtcaatcc cgactctatt gtaattgtgt gggaaggcgc ttttgcccgt
      781 aaatttaata ttcaggtaaa gtgtgatgac aagcagtgga gggagcttta tgcaaccaat
      841 agtttcagcg gaggtaaaag cattatttac aacaaagaaa agctgagttt tcgccaactg
      901 aaagtcaatt gcaccgaacg tgcaaccgat tacggatcat cgttttattc cctgaaaatc
      961 tgcggaaaaa gagaaaggac aagcaatcaa tctccagttg cccgggccgg attttcatca
     1021 gacaaaaacg gttttgtgca acttgatgga agtaaaagct atgataaaaa caaactggat
     1081 aagcttttat acagttggga gcaaattgca ggcccagctg tggttcagct tgggaatgta
     1141 aattcggcaa cggtcagcgg tttttttcca aaacccggat attatttttt caaactaaaa
     1201 gttgacgatg gaaaagatgt tgactttgat atacttaaag tgtcattccc cggaaaataa
     1261 atacttgatt caatatgaaa aaatcacttg taacgctgat atttatatca ttggcaacta
     1321 tcgttgcagc gcagaatgct atacaacttg gagcaggcag ctatgccgaa tatccgcctg
     1381 atagtgtggc taatgaagat ggctattttg caaaaaaata ctcttggttc cgcgataact
     1441 ggaacaatct gtatctgcat gaaaatgccc ggcacaaacc gcttcctacc aataaatggt
     1501 ggacaaacta tgtttttgct caatatggtg gcgaagcatg ggcttatccg caggctgttt
     1561 cggcagataa cgaaggcata aacattaaaa ttcccaatgg ttttcagggt ggtggtatga
     1621 ttacaatgcc tatgctggag gtaaaaggtg cttcgcaatt gcaggtaacc gatgaggcca
     1681 ttgtttttgc cgattttgaa agttctactt atcctacagg ctggacagta ggcgcaaatc
     1741 cggctttttc aggacctgtg gctttggctg atattaatca aagtccaact ccgaatggtt
     1801 ttgttggaac acgatttgtg aactcatata aaggtaacga aggtaaattg tcgctgactt
     1861 ctacatcgtt tgtgatttct aaaaactaca ttaaactccg tgttggtggc ggtaattatc
     1921 caaccgatac gtatgtggga ttgtttatca acggtacgcg cgtgttgagt gaaaccggag
     1981 caaacagtgc aaatttgact gcacggacgt gggatgtttc ggcttacatg ggtcaaacgg
     2041 ctgaaattcg tattgtggat aattctaccg gtggctgggg tttcattatg tgcgacgaca
     2101 ttattttctc aaacagtacc tattcaggaa cgggttatcc gactgatttt gcgccgaaaa
     2161 gttccaatgt gtacgactgg acagatttgg gatttacttt tagaaatgaa gatacagtag
     2221 gacgcataat ggatgtaact ttggttcatg gagttccgtt tacctggatt gagcttaaaa
     2281 atctcgttcc gattttgaaa ccgggtgttg tttcaaaaat ctacgattcc aacggtaacg
     2341 aagtaaccac tttccctgtt caactgaatg tctgtactat ggaatttggt ggtcggattt
     2401 atgggatt
//
LOCUS       DATDNM010000749         2509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1797752, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000749 DATDNM010000000
VERSION     DATDNM010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1797752"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..957)
                     /locus_tag="VI413_12560"
     CDS             complement(<1..957)
                     /locus_tag="VI413_12560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018667891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY6915501.1"
                     /translation="MAKDLRYTRNIGIMAHIDAGKTTTSERILYYTGLTHRIGEVHDG
                     AATMDWMEQEQERGITITSAATTTFWKYNNTEHKINNIDTPGHVDFTVEVERSLRVLD
                     GAVALFCAVGGVEAQSETVWRQAEKYGVPRIGFVNKMDRSGADFYNVVAEVKEKLGAN
                     PVPITIPIGAEETFEGVVDLIEMKAIRWRDDATLGTTFYLEEIPANMVEIANEYRAKL
                     VEAVAEHDDALLEKFFEDPDSITAEQMIEVIRKATISMSIIPMLCGSAFKNKGIQHLL
                     DAVCQFLPSPLDKGEIVGVDYDDKDAEVIRHSDVNEPLAALAF"
     gene            complement(1046..1522)
                     /gene="rpsG"
                     /locus_tag="VI413_12565"
     CDS             complement(1046..1522)
                     /gene="rpsG"
                     /locus_tag="VI413_12565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009597682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEY6915502.1"
                     /translation="MRKSKPKKRIILPDPKFNDTLVTRFVNDLMYDGKKSIAYQIFYD
                     AMDVVGAKMKDNEVSPVDVFKKALEKITPQVEVKSRRVGGANFQVPMEIRPERKVSIS
                     VKNLILFARKRSGRSMADKLAAEIIAAYNEEGGAYKKKEDVHRMAEANRAFAHFRF"
     gene            complement(1650..2030)
                     /gene="rpsL"
                     /locus_tag="VI413_12570"
     CDS             complement(1650..2030)
                     /gene="rpsL"
                     /locus_tag="VI413_12570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018359649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEY6915503.1"
                     /translation="MPTIQQLVRKGRQHNAETSKSPALDSCPQRRGVCVRVYTTTPKK
                     PNSAMRKVARVRLTNGKEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHLIRGAL
                     DTAGVEGRTQRRSKYGAKRPKAKK"
     gene            complement(2254..>2509)
                     /locus_tag="VI413_12575"
     CDS             complement(2254..>2509)
                     /locus_tag="VI413_12575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915504.1"
                     /translation="DNFPYMEYGFLIGTVKSISLMPNNENYVVEVSLPQDMKTNYNIP
                     LKFSQEMKGSAEIITEDLRLIERFFNPVKSLLKHRVSLSE"
BASE COUNT          708 a          569 c          446 g          786 t
ORIGIN      
        1 aaaggcaaga gcggccaatg gttcgtttac atcggaatga cgaattactt ctgcatcttt
       61 atcgtcataa tcaacgccta caatttcacc tttgtcaagc gggcttggca ggaattgaca
      121 aacggcatcc agcaaatgct gaattccttt atttttaaat gcagaaccac acaacatggg
      181 gataattgac atactgatag tcgccttgcg gatcacttca atcatctgct cagcagtaat
      241 tgaatcagga tcttcaaaga acttttccaa cagggcatca tcatgttcag ctaccgcttc
      301 cactaatttt gcacgatact cattagcgat ctcaaccatg ttggctggaa tttcttccaa
      361 ataaaaggtg gtaccaaggg tagcgtcatc tctccagcga atggctttca tctcaatcaa
      421 atccaccacg ccttcaaaag tttcttctgc accgattgga atagtaattg gaacaggatt
      481 tgcacccagt ttttccttta cttcagcaac tacattgtaa aagtcagcac ccgaacggtc
      541 cattttatta acaaaaccga tacgtggtac accgtatttc tctgcctgac gccaaacggt
      601 ttcagactga gcttcaacac cgcctacagc acaaaaaaga gcaacagcgc catccaatac
      661 acgcagtgaa cgttctactt caacagtgaa gtcaacgtgt ccgggggtat caatgttgtt
      721 gatcttatgt tctgtgttat tgtatttcca gaacgtggtt gttgcagcag aggtaatcgt
      781 gataccacgt tcctgctcct gctccatcca gtccatagtg gcagctccat cgtgcacttc
      841 accaatacgg tgagtcaatc ctgtgtaata caggatacgc tccgaagtgg tggttttgcc
      901 agcatcaata tgagccatga tgccaatatt tcttgtatat cttaaatcct tagccatttt
      961 ttaccaatac ctttcctaaa aatctaatta tctattgttg taataataaa ctaaactata
     1021 tatttatcta ttattttctt acctattaaa accggaaatg agcgaatgcg cggttggctt
     1081 cagccatacg gtgcacatcc tccttctttt tatatgcgcc accttcttcg ttataagcag
     1141 cgataatttc tgcggcaagt ttatcagcca ttgaacggcc tgaacgcttg cgggcaaata
     1201 aaataaggtt ttttactgaa atggatactt ttctttccgg acggatttcc attggaacct
     1261 ggaaattagc tcctcccact ctgcggcttt ttacttcaac ctgtggggta atcttttcga
     1321 gggctttttt gaacacatca acaggactta cttcattgtc cttcatctta gcgcctacta
     1381 catccatggc gtcatagaaa atttgatatg ctatagattt ttttccgtca tacattaaat
     1441 cgttgacgaa acgggtaacc agcgtgtcat tgaactttgg atcgggcaga atgatccgct
     1501 tctttggttt cgattttctc attataaaat gctttagtgt tacttaaatt agctgtcgat
     1561 ttgcaggctt caatcggccc ctcaggcctc tttactcaac tcaaaccact aagctagaac
     1621 gtcaattaat aaacaaaaac aaataaaaat tactttttgg cctttggtct tttagcaccg
     1681 tattttgacc gtctctgcgt acgaccttca acaccggctg tgtccaaagc tccacgaatt
     1741 aaatggtaac gtactcctgg aaggtctttt accctgccac cgcgtaccaa tacaatagag
     1801 tgttcctgaa gattgtgtcc ttctcctgga atgtaagcat tcacttcttt tccatttgtc
     1861 aatctaaccc tggctacttt acgcatcgcc gagtttggtt ttttaggagt ggtagtgtag
     1921 acacgaacac atactcccct tctctgtggg catgaatcca acgcaggaga tttgctggtc
     1981 tctgcattgt gttgtctgcc ttttctaact aactgctgaa tcgttggcat atagctactc
     2041 ttaattttaa tattacttac acaaaaaatt ggtctgcaaa ggtattgtaa tttcacagaa
     2101 atacaacact ttacaacccg agtaaagagt ttttcccttt aaaacggctc gcaaaagtac
     2161 taattaccaa cagaaaacac aataaaaccc aataaaaaat tgatcttttt tcaaatatta
     2221 atataaaata tacccaatgg aagtgattta tccttattcg gatagggata cccgatgttt
     2281 taacaaggat ttaacgggat taaagaatcg ctcgattaag cgaagatctt ctgtaataat
     2341 ttcagccgat cctttcatct cctgactgaa ctttaaagga atgttgtagt tggttttcat
     2401 atcctggggc aaactgactt ccactacata gttttcattg ttcggcatca gggatatact
     2461 ttttactgtt cctatcaaaa aaccatattc catatagggg aagttatca
//
LOCUS       DATDNM010000750         7906 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_944119, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000750 DATDNM010000000
VERSION     DATDNM010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7906
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_944119"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..855)
                     /locus_tag="VI413_12580"
     CDS             complement(<1..855)
                     /locus_tag="VI413_12580"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HEY6915505.1"
                     /translation="MKLKNIANLASVCLVLALTGCANKSADESYSRVTGWAYNDKTGT
                     GFAVKKNYVSEAPSGMVAIEGGSFTIGEKGEFITAPRDNRPRRITVSSFYMDEYEIRN
                     VDWREYTNWMKVVFGKTAPKLVAMTQPDFKVWREELAYNEPYLENYFTHPAFDQYPVV
                     GVTWQQAMDYCTWRTDRVNELALVDAGIILPPDFTKLEKQTNHDSIANTFVFNTQKYL
                     TQSGYQPAEGKNPKKDLYGKNRKVDMSDGILFSEYRLPTEAEWEFAAYAIKADKDGII
                     PEGKLYPWL"
     gene            1115..1957
                     /gene="folP"
                     /locus_tag="VI413_12585"
     CDS             1115..1957
                     /gene="folP"
                     /locus_tag="VI413_12585"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEY6915506.1"
                     /translation="MANSVLQIKLNNRLVDLSTPIVMGIVNATPDSFFKGNRFTSDKG
                     ILNCVDKILSDGGTIVDIGGYSTRPSAEIITQEEEIERVSNALEIVLKKFPETIISVD
                     TFRSGVARHVVKNFGIAMINDIGGGTLDDLMFETIADLKVAYVLMHTRGTPQVMQSHT
                     QYEDVVSEVLYFFEKRVARLRLLGVDDVVVDPGFGFAKTIEQNYQMLNKLSYFKELDV
                     PILAGLSRKSMLYTLLGTDAQGALNATTAANMLALMGGASILRVHDVKEAKETISIYQ
                     KCCK"
     gene            1978..2760
                     /gene="cdaA"
                     /locus_tag="VI413_12590"
     CDS             1978..2760
                     /gene="cdaA"
                     /locus_tag="VI413_12590"
                     /EC_number="2.7.7.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004016 - adenylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase CdaA"
                     /protein_id="HEY6915507.1"
                     /translation="MGFQVGFKDIIDVFLVAILLFQTFKLLKRTGAVNIFIGILAFII
                     CWFLVTYIFKMELLGGIFDRVVSVGAFALIVLFQDEIRRFFSRIGTRRNWSTFNSLKR
                     FFGSNSNQKEQTDYDLVQIVLACRGLAKNSTGALIILTRTNNLEFYSQSGEQINANIN
                     SRLLESIFFKNSPLHDGALIISQRRLKAAACILPVSKNQSIPKRMGLRHRAALGITEH
                     TDAIAIIVSEETGHISWAVNGQLTVNVKPEQLEHFLSEELTN"
     gene            2886..3965
                     /gene="fbaA"
                     /locus_tag="VI413_12595"
     CDS             2886..3965
                     /gene="fbaA"
                     /locus_tag="VI413_12595"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEY6915508.1"
                     /translation="MGKISDVVKPGVVTGSDLQFIFKVAKENGFAIPAVNVVGSSTVN
                     AVMEAAKVANAPVMIQFSNGGAAFNAGKGLKLEGQQAAILGAIAGAKHIHTLAEAYGV
                     HVVLHTDHAAKKLLPWIDGLLDASEKHFAQYGKPLFSSHMLDLSEEPIEENIEISKRY
                     LERMSKMGMTLEIELGITGGEEDGVDNSGVDNSLLYTQPEDVYYAYKELSKVSPNFTI
                     AASFGNVHGVYKPGNVKLMPVILKNSQDYIKAKDGLDAAHPVSFVFHGGSGSTHEEIR
                     EAISYGVVKMNIDTDTQWAYWDGVRGFEAKNREYLQGQIGNPEGAEKPNKKFYDPRVW
                     LRKGEEALIARLQVAFEDLNAINSI"
     gene            complement(4086..4322)
                     /locus_tag="VI413_12600"
     CDS             complement(4086..4322)
                     /locus_tag="VI413_12600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915509.1"
                     /translation="MTEELDRLLYEPPGWVIDELVVVAKTRINELLLEKQLRGDAKNG
                     KYRGGLSRHSGSNVKCCFVRCANDNKTSKSVYVP"
     gene            complement(4934..5926)
                     /locus_tag="VI413_12605"
     CDS             complement(4934..5926)
                     /locus_tag="VI413_12605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009596759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEY6915510.1"
                     /translation="MVNYKDLGLVNTNDLFKKAIEGKYAIPAFNFNNMEQLQAIVAAC
                     VETKSPVILQVSSGARKYANQTLLRYMAQGAVEYAKELGLNIPIALHLDHGDTFELCK
                     SCVDSGFSSVMIDGSHHSYEDNIALTKKVVEYAHAHGVSVEGELGVLAGVEDDVVAEH
                     HTYTRPEEVVDFVTRTGVDSLAISIGTSHGANKFTPAQCTRDENGHLVPPPLRFDILE
                     EIEKQIPGFPIVLHGASSVPQEYVETINKYGGVLKDSIGIPEEQLRKAATSAVCKINI
                     DSDGRLAMTAAVREVFAKQPGEFDARKYLGPARDELKKLYAHKTVSVLGSAGKA"
     gene            complement(6135..7676)
                     /locus_tag="VI413_12610"
     CDS             complement(6135..7676)
                     /locus_tag="VI413_12610"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thrombospondin type 3 repeat-containing protein"
                     /protein_id="HEY6915511.1"
                     /translation="MKIKKPFLIALLISTQIISAQTADNRFALGLNFVKNEYNGDYGN
                     GIFNFSQRWYAAGGISLSTYLTPSFDLGLQGTYGNYGYYKTTIDNFAGGKFDASLYTH
                     YKLNNGYILREDSKWSPFLSLGFGVANYSINNSATPWPTIITDGPDLIIPLGVGLKYQ
                     LTSSIAIQYQYLYNFTTSDVHDQNRSGGVNNIVFGTPLHPGIKAGNDAYGQHMLGFVF
                     TLSGAKDSDHDGVSDKYDKCIDTPVDVKVDAAGCPIDSDNDGVADYLDKCSDTPSGVK
                     VDVNGCPVDADKDGIADYLDKCPAVAGLEKFNGCPDTDGDGIQDSEDKCPTVAGLAKL
                     NGCPDTDGDGITDSEDKCPTVAGLAKFNGCPDTDGDGVPDNLDKCPTIAGIAANKGCP
                     EVKAETKKIFAQALQGIQFESGKDVIKKTSFPILNKVVTVMKENPSYELEINGHTDSQ
                     GDDAKNMVLSQNRANAVKAYLVNQGVDAAKLTAKGFGETMPVANNATTQGRTLNRRVE
                     FKVNF"
BASE COUNT         2276 a         1493 c         1576 g         2561 t
ORIGIN      
        1 taaccacggg taaagtttgc cttcaggtat aattccatcc ttgtcagcct ttatggcata
       61 agcggcaaat tcccattcag cctcagtagg taatctgtat tctgagaaaa gaattccgtc
      121 agacatatca actttacggt ttttaccata tagatctttc tttggatttt taccttctgc
      181 aggttggtat cccgattgag tcaaatattt ctgtgtatta aatacgaatg tatttgcaat
      241 agaatcgtga tttgtctgct tttctaattt ggtaaaatca ggaggcaaaa taattcctgc
      301 gtcaaccagc gctaattcgt taacacggtc agtacgccag gtacaatagt ccatagcttg
      361 ctgccatgta acacctacaa ccggatattg atcaaaagcc ggatgtgtga aatagttttc
      421 aagatatggt tcgttgtatg ccaattcttc gcgccacact ttaaaatcgg gctgtgtcat
      481 ggcaacgagc tttggagccg ttttgccaaa tactactttc atccagtttg tatattcgcg
      541 ccagtcaaca ttgcgaattt catattcgtc catgtaaaaa gaactcacag taattctgcg
      601 tggcctgttg tcgcgtggag ctgtaataaa ttctcctttt tcaccaatcg taaacgatcc
      661 cccttcaatc gcgaccattc cgcttggagc ttcagaaacg tagtttttct tcacagcaaa
      721 cccggttcct gttttatcgt tgtaagccca acccgttacc cgggaataac tttcgtcagc
      781 cgacttattt gcgcaaccag tcagtgctaa aactaaacac actgatgcta aattagctat
      841 gttttttaat ttcataagag tatgataaat taatcggtaa aaattgtttt aaacaacttt
      901 gcaaaaatag tgtttttttc cagtaaaaag tcaatgtgaa ttaatttttt aatttttcgg
      961 actaaaactt gtatcataat aactcatttt ggtttgaaaa cgtatactca taattaatat
     1021 tttctatttt ttaggataaa tatcactcgc tcgctatatt ttcttacttt tgcaattgta
     1081 ttattaatct gcatttttgt gtttgtgttg gactatggct aactctgttt tacaaataaa
     1141 attaaataat cggttagtcg atttgtcgac tccaattgtt atgggaattg tgaatgcaac
     1201 gcccgattct tttttcaaag gaaacagatt tacaagtgat aaaggcattt taaattgtgt
     1261 ggataaaatt ttatccgatg gaggtacaat tgttgatatc ggtggctatt ccacacgtcc
     1321 atcggctgaa ataataacgc aggaagaaga gattgaaagg gtctcgaatg cccttgaaat
     1381 tgtgttgaaa aaatttcccg aaacaataat ctctgtagac actttccggt cgggtgttgc
     1441 caggcatgta gtaaaaaatt tcggtatagc catgataaat gatattggag gaggaactct
     1501 tgatgattta atgtttgaaa caattgccga tctgaaagtg gcttacgttc ttatgcatac
     1561 acgaggtacc ccgcaggtca tgcaatcgca cacccaatat gaagatgttg tttccgaagt
     1621 gttatatttt tttgaaaaaa gagttgccag gcttcgtttg ttgggcgtgg acgatgtagt
     1681 tgtcgatccc ggattcggat ttgccaaaac catagagcag aattatcaga tgctaaataa
     1741 actgtcttat tttaaggagt tggatgttcc gattttggca ggtctttcca gaaaatcgat
     1801 gttatatacc ttgctcggaa ctgatgccca gggagcattg aatgctacaa cggcggctaa
     1861 tatgctggca cttatgggcg gggcatccat tttgcgggtt cacgatgtaa aagaagcaaa
     1921 agaaacaatt tctatctatc aaaaatgctg taaataacaa agttgtaact ttacgatatg
     1981 ggatttcaag taggatttaa agatataatt gatgtttttt tggtggcaat attgcttttc
     2041 caaaccttta agctgctcaa aagaaccggg gcagtgaata tcttcattgg tatccttgca
     2101 tttattattt gctggtttct ggtgacctat atttttaaaa tggaattgct tggtggtatt
     2161 ttcgatcgtg tagtaagcgt gggagctttt gctttgattg tacttttcca ggatgaaatc
     2221 cggcgtttct tttcacgtat tggtacgcgc agaaactgga gtacttttaa ttctctgaag
     2281 cgcttttttg gaagcaactc caaccaaaaa gaacaaaccg attatgattt ggttcaaatt
     2341 gtattggctt gcagaggttt agctaaaaac tcaacaggtg cactcataat tctgacccgc
     2401 acgaataacc tggaatttta ttctcagtcc ggcgagcaaa taaacgccaa tatcaactcc
     2461 cgtcttcttg aaagtatttt ctttaaaaat agtccgttac acgatggggc tctgattatt
     2521 tcgcaacgga gactaaaggc ggcagcatgt attttgccgg tttcaaaaaa tcagtctatc
     2581 cccaaacgta tgggtttgcg ccatcgggct gcattgggga ttactgaaca tactgatgcc
     2641 attgccatta ttgtttccga agaaaccgga catatttcgt gggctgtaaa cggacaactt
     2701 acagtaaatg taaagcccga gcaattggaa cactttctct cagaagaact gactaattag
     2761 tatgttgata aagactttgt aacactctgt agagaaatag ggaggtattt tatttcaact
     2821 ttttctatct ctgtttgttc tataatcatt gtaaatcatt aaaaacaatt taataatagt
     2881 aaattatggg taaaatttca gatgtagtaa aacccggtgt ggttaccgga tcagatctgc
     2941 agtttatttt taaagtagcc aaagaaaacg gattcgcaat tcctgcagtg aatgtagttg
     3001 gatcttccac agtgaatgca gttatggaag ctgcaaaagt ggctaatgcg ccggtaatga
     3061 ttcagttctc gaatggtgga gcagcattta atgccggaaa aggattgaaa cttgagggcc
     3121 agcaggcagc cattttgggt gctatagcag gagctaagca tattcataca ctggccgaag
     3181 cctatggtgt acatgttgtt cttcataccg accacgcagc caaaaaactc cttccatgga
     3241 ttgatggttt gcttgatgcc agcgaaaagc attttgcaca atatggcaag ccgcttttca
     3301 gttcacacat gttggacctt tcggaagagc caatcgaaga aaacatcgaa atcagtaaac
     3361 gttatcttga gcgcatgagt aaaatgggta tgaccctcga aattgagctt ggaattaccg
     3421 gtggtgagga agatggcgtt gataacagtg gtgttgacaa tagcttgctt tacacacaac
     3481 ctgaagatgt ttattatgca tacaaagaac tgagcaaggt gtcgccaaac tttactattg
     3541 ctgcttcatt tggtaatgtg catggtgttt acaagccggg taacgtgaaa ttgatgcctg
     3601 taattttgaa aaactcacag gactatatta aggcgaaaga tggtttggat gctgcacatc
     3661 cggtaagttt tgtattccac ggcggatcag gttctacaca tgaagaaatt cgcgaagcta
     3721 tcagctatgg tgttgtaaaa atgaatatcg ataccgatac ccagtgggct tattgggatg
     3781 gagttcgtgg ttttgaagct aaaaaccgtg aatatcttca aggtcagatt ggaaatccgg
     3841 aaggagcaga aaaaccaaat aagaaattct acgacccacg cgtttggttg cgcaagggtg
     3901 aagaagcttt gattgcccgt ttgcaggttg ctttcgaaga tttaaatgct attaatagta
     3961 tttgataaat ggataactga caatggacag ttgacaattt gttttcaaga cgtttataaa
     4021 acaaaggtcg tttctttatt gaaacgacct ttgcttttct gttgatcaaa cacctatgtt
     4081 tagccctaag ggacatacac cgacttagaa gttttgttgt cattggcgca acgaacaaag
     4141 caacatttca cattggagcc tgaatgcctg gataatccac cacgatattt cccgtttttt
     4201 gcatcgccac ggagctgttt ctccaatagc aattcgttaa tccgtgtttt ggctaccacc
     4261 accagttcat ctataaccca tccaggtggc tcgtacaaca atctatccaa ctcttcagtc
     4321 atactccgac ttgctcttac tcactacctg ttctcctttt attccccttc atttcgcgta
     4381 catagataat acatataaaa aacatactaa atacttaatt aatacttatt tattaaagag
     4441 tagttttatg tttgttttta ttctgttttt cagaagattt tttctacttt gtaagtagaa
     4501 agaagagcga aggggaggag agagaacccc aaactcctaa aggggcttaa gactaggtgt
     4561 gcaacataaa gcaaaaggtt gtttttacat tcgctggtta gtgtatgggg cattttagga
     4621 gacaaaagta atttggtttc ccctttagag gcttgggcga tttgttagtt atagtttatg
     4681 aacttatgct atatgtagct atgtgagact atgtgtttgg attacctatt atttctatta
     4741 actcacgtcg tttagttgac cgctggttgg ttttaaaatc aaggcgaaaa gctgtctaaa
     4801 agctgctgag tgccacaaac aaattaaaaa aacaaaaggt cgtttcagtt aggaaacgac
     4861 cttttgtttt agaatagttt agttttgacg gtatttattt attataaact accaactata
     4921 aactataggc taatcacgct tttccagcgc tacccaaaac acttacagtt ttgtgagcat
     4981 ataatttctt caattcgtcg cgagctggac ctaagtattt acgagcatcg aattcgcccg
     5041 gttgttttgc aaatacttcg cgcacagcag cagtcattgc caaacggcca tcagagtcga
     5101 tattgatttt acatacagct gaagtagctg ctttgcgcaa ttgctcttca gggataccga
     5161 ttgaatcttt caatacacca ccgtatttgt tgatagtttc aacatactcc tgtggaactg
     5221 aagaagcacc gtgaagtaca atagggaaac cagggatttg tttttcaatt tcttccaaaa
     5281 tgtcgaaacg caatggaggt ggtactaagt gaccgttttc gtcgcgagta cattgagccg
     5341 gagtaaattt gttagcaccg tgagaagttc caattgagat agccaatgaa tcaacaccgg
     5401 tacgggttac aaagtcaaca acttcttcag gacgggtata tgtgtggtgt tcggcaacta
     5461 catcatcttc aacgcctgct aatacaccaa gctcgccttc aacgcttacg ccatgagcgt
     5521 gtgcgtattc aactactttt ttagtcaaag caatgttatc ttcgtaagag tggtgtgaac
     5581 catcgatcat aactgaagag aaacctgagt ctacacagct tttgcacaat tcaaaagtat
     5641 caccatggtc aaggtgtaaa gcgattggaa tattcaagcc taattctttt gcatattcaa
     5701 ctgctccctg agccatgtaa cgaagtaaag tctggttagc atatttacgt gcgccacttg
     5761 atacttgtaa gataacagga gattttgttt caacacaagc agcaacaatt gcctgtaatt
     5821 gttccatgtt gttgaaattg aaagctggaa ttgcatattt gccttcaata gcttttttga
     5881 ataagtcgtt ggtattcacc aatccaagat ctttgtaatt taccattttt gttgaattta
     5941 atagtttgat aatttgaccg caaaagtagt gtttttttat caaatatgaa agaaaaacca
     6001 atcataaagt attaaacgtt ttttctcttt gtcttattga taacaattac tcagtttagg
     6061 cactgatatc tgtatttgaa aaatccccgt taagttttat tttaacgggg attgaattgt
     6121 attagcgggg cggattagaa gtttacttta aactccaccc gtctgtttaa tgttcttccc
     6181 tgggtagtag cattgttggc aacaggcata gtttctccaa acccttttgc agttagtttg
     6241 gctgcgtcaa ctccctgatt tacgagataa gctttaactg cattggctcg attctgtgat
     6301 aataccatat ttttggcatc atctccctgg ctgtcagtgt gtccgtttat ttccagttcg
     6361 tatgacgggt tttctttcat gacggtcacc actttattca ggattgggaa tgatgttttc
     6421 ttgataacat cttttcctga ttcgaattga atgccctgca atgcctgtgc aaaaatcttt
     6481 ttagtttctg cttttacttc cgggcaacct ttgttggctg caatgccagc tattgtcgga
     6541 catttatcca gattatcagg aactccatcg ccatcagtgt ccgggcatcc attgaatttt
     6601 gccaaaccag caacagtagg acatttatct tcgctgtcgg taatgccatc tccatcggta
     6661 tcagggcaac catttaattt agctaaacct gcaactgttg gacacttatc ttcgctgtcc
     6721 tgaattccat caccatctgt atcggggcat ccattgaatt tttctaatcc tgcaactgcc
     6781 gggcatttat ccagatagtc ggctataccg tctttatctg catcgacggg gcaaccattt
     6841 acatctactt ttacaccgga aggagtatct gaacatttat ccagataatc tgccactcca
     6901 tcgttatctg agtcaatcgg gcaaccagcg gcatcgacct ttacatcaac aggtgtatcg
     6961 atacacttat cgtatttgtc tgatacgccg tcatgatcag agtcctttgc tccactcaac
     7021 gtgaacacaa agccaagcat gtgttgtccg tatgcatcat tcccagcttt tattccgggg
     7081 tgcagaggcg ttccgaaaac gatattgttc actccgccac ttctgttctg gtcgtgcaca
     7141 tcgcttgtgg taaaattata taaatattga tattggatag caattgagct ggtaagttga
     7201 tattttaagc caactccgag aggaattatt aagtcggggc catctgttat tatggtaggc
     7261 catggagtgg cggaattgtt tatggaatag ttagctactc cgaatcccaa cgataaaaat
     7321 ggtgaccact ttgaatcctc tctcagaata taaccattgt tgagtttgta atgagtgtat
     7381 aaagatgcgt cgaatttacc ccctgcgaaa ttatctatag tggttttgta atatccataa
     7441 ttgccatacg ttccctgcag acctaaatcg aatgacggtg ttaaataagt tgatagggaa
     7501 ataccccctg cagcatacca acgttggcta aaattaaaaa taccattacc ataatctcca
     7561 ttgtactcgt tcttgacaaa gttcaatcct aaagcaaatc tattgtctgc tgtttgtgca
     7621 cttataattt gtgtgctgat taaaagtgca attaagaatg gctttttaat tttcattaga
     7681 tttaattttt ttaggttagt aaacgagttt tctaattttt ataaaaacaa ataaaattaa
     7741 aaatatgttt ataaaagtga tatagaaaat cttctcttta acgttattta tactttgatg
     7801 ctataagcat atttttcttc taaatgggtg gttttctttt tcatgtattt attggaagtg
     7861 taaaaattgc tggtttttat aatattcgta aaacaaaacg accaga
//
LOCUS       DATDNM010000751         2607 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_729304, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000751 DATDNM010000000
VERSION     DATDNM010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_729304"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2607
                     /locus_tag="VI413_12615"
     CDS             <1..>2607
                     /locus_tag="VI413_12615"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6915512.1"
                     /translation="ENSMSPAEFDITSYIHKGENKLAVEVYKYCDGSYLEDQDMWRLG
                     GIFRDVDLIARPKTYISDFFVKAEPDKSFTNANISVNVKLENRSNIKSSGLHIDAEIT
                     GFTKSGETVDMNLSQKIPTVLNGKQLSVDLKSMINDAKLWSAETPDLYRIVLKLKNKK
                     NEIVDKAECNFGVRKIEVRGEVFYINGKAVKLKGVNRHEQHPRTGKHMPTGTMIKDME
                     LMKQANINWIRTSHYPNDPLFYELCDKYGFYIMDEANQEAHDYGLSNNVSGDDPQWKK
                     MHVERAVSLVERDKNHACVIFWSLGNEGGKGRNMKAMADTIKKLDPTRLVFSDTHREI
                     SDLYDDSYLHPADFKKLAEKINDKPVVMREYAHVMGSSGGNLQEYWDVMYADSSIAGA
                     AIWEWNENGLPKPKDGSSLKLTLHPDDCSLKENEFWAYGGDFGDTPNDGNFCIRGLVT
                     TDRKPNPHYYEVQKVYQPVVFQLVNDKAASIRVTNHFDFQPLQNFDFEYEYTSNGKSI
                     QRGTFRCDDVLPGASTVVNLPAPQLADTVSSDICLNIYVRLKNATLWAETGYCIAREQ
                     FVVKPYRWADQKDLFTASLQVVVKENERKRIFPPENPVVAMESPLYIAIKTQNSEFIL
                     DKKSGSLLSWKVNQQELLKGQLEPYFWKTPNDNQKQSGYTKEFAMWRNAAEKRVVKNV
                     DIFRNGNFVSIKIDMNLPTIGADYTLDYQVDGNGKLQIMASYQPLNDTITLLPKFGMR
                     MRIPEVFSNVCWYGRGFYENYPDRKTASFIGLYQAKLDDFVTHYAAPQDNANRCDVRW
                     FTLGAQNNTAIKVTGLQPLCFRAWPYTEEDLEPARHDYELPKRDFINLNIDLNIHGVG
                     GDDSWGAKTMDKY"
BASE COUNT          825 a          491 c          596 g          695 t
ORIGIN      
        1 gaaaattcca tgtcaccagc tgagtttgac atcacctctt acattcataa aggagaaaat
       61 aaactggcgg tagaagtgta taaatattgc gacggcagct atctcgaaga tcaggatatg
      121 tggcgactgg gtggaatttt cagggatgtg gatttaattg cccgccctaa aacctatatc
      181 agcgactttt ttgtgaaggc agagccggat aaatctttta cgaatgccaa tatctcggtt
      241 aatgtcaaac tcgaaaaccg ttcaaacata aaaagctcag gtttgcatat cgatgccgaa
      301 ataacaggtt ttacaaaatc aggagaaact gtggatatga atttatccca aaaaatcccc
      361 actgttttga acgggaaaca actttcggtg gatttgaagt caatgataaa cgatgcaaaa
      421 ttatggtcgg ctgaaacacc tgatttatac cggattgtgc tgaaattaaa aaacaaaaag
      481 aatgaaattg tagataaagc cgaatgcaat tttggtgttc gaaagattga agttcggggt
      541 gaagtatttt atataaatgg caaagcggtg aaactgaaag gagtcaaccg tcatgagcaa
      601 catccacgca ccggcaaaca catgccaacg ggcacgatga taaaagatat ggagttgatg
      661 aaacaggcta atatcaactg gattcgtact tcgcattatc ccaacgaccc gctgttttat
      721 gagctttgtg acaaatacgg attttatatc atggacgaag ccaatcagga agcccacgat
      781 tatggtttga gtaataatgt gtctggcgat gacccgcaat ggaaaaaaat gcatgtggaa
      841 cgtgcagttt cgttggtgga acgggataaa aatcatgctt gcgtcatttt ttggtcgttg
      901 ggcaatgaag gtggaaaagg tcgcaatatg aaggccatgg ccgatacaat caaaaaactt
      961 gacccaacac gtttggtctt ttccgataca caccgcgaga tttcagacct gtacgacgac
     1021 agttacctgc atccggccga ttttaaaaaa ttagctgaga agattaatga taaaccggtt
     1081 gtgatgcgtg aatatgccca cgtgatggga agttcgggcg gaaatcttca ggagtattgg
     1141 gatgtgatgt atgccgattc aagcattgca ggagctgcca tttgggaatg gaacgaaaat
     1201 ggattgccta aacccaagga tggttcttcg cttaaactta cgctgcaccc cgatgattgc
     1261 tcgttgaaag aaaacgaatt ctgggcgtat ggaggcgatt ttggcgacac acccaacgat
     1321 ggcaatttct gtataagagg tctggttacg accgacagaa aaccaaaccc acattattac
     1381 gaggttcaaa aagtatatca accggttgta tttcagttgg taaatgataa ggctgcaagc
     1441 attagggtta ccaatcattt tgatttccaa cccttgcaaa attttgattt tgaatacgaa
     1501 tatacttcca acggcaaatc gattcaacgg ggtacattcc gttgcgacga cgtattgccg
     1561 ggtgcatcta ccgttgtcaa tcttcccgca ccacagttgg ccgacacagt ttcgtctgat
     1621 atttgtctga atatctacgt ccgactaaaa aatgcgactc tttgggctga aacaggttat
     1681 tgcattgccc gggagcaatt tgtggtgaaa ccatacaggt gggctgatca aaaagattta
     1741 tttacagcga gtctacaggt tgtcgttaaa gagaatgaga ggaaaagaat atttcctccc
     1801 gaaaatcctg tagttgcaat ggaatcacca ttatacattg caataaaaac gcaaaattca
     1861 gaatttattc ttgataagaa aagtggttct ttgctcagtt ggaaagtcaa tcagcaggag
     1921 ttgctcaaag gtcaactgga accctatttc tggaaaacac ccaacgataa ccaaaaacaa
     1981 agcggttata caaaagaatt tgcaatgtgg agaaatgcgg cagaaaaaag ggtagtaaag
     2041 aatgttgaca tatttagaaa tggaaatttt gtatctatta aaatagacat gaatttgcct
     2101 actattgggg ctgattatac cttggattat caggtagatg gcaatggaaa attacaaata
     2161 atggcatcat atcaacctct gaacgatacc attacactgc tgccgaaatt cggtatgcga
     2221 atgcgtattc ctgaagtttt tagtaacgtt tgctggtacg gacgtggttt ctacgaaaat
     2281 tatcccgacc gtaaaacggc ttcgtttatt ggactttacc aagctaaact ggacgatttt
     2341 gtgacccatt atgctgcacc tcaggataat gccaaccgct gcgatgtgcg ttggtttaca
     2401 ttgggtgctc aaaacaatac agccataaaa gtgacaggtt tgcagccact ttgcttccgt
     2461 gcctggcctt atacagagga ggatttggag cctgcccgcc acgactacga attgccaaaa
     2521 cgagacttta tcaacctgaa tattgatttg aatattcacg gcgtgggtgg tgatgattcg
     2581 tggggtgcta aaacaatgga taaatac
//
LOCUS       DATDNM010000752         3107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_89274, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000752 DATDNM010000000
VERSION     DATDNM010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89274"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..891
                     /locus_tag="VI413_12620"
     CDS             <1..891
                     /locus_tag="VI413_12620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915513.1"
                     /translation="FFFAWIVHPKTFDGKRYSLRDSIKRIFIKPMIKQMILSGGFYYM
                     DKSCSDSINKYFNINPDNEYLPIPVMGIEKKNNAILNSLIVKKNKDEIPLSYIGRAAN
                     WKVNPVKKIISDLSEIKNKSKKEFILHIFTDDVEEFKKLLSYDSCEIEIIYHANIFGR
                     ELDDFIKNKILINLAMGTSALESAKLGIPSILLDASYGEFPHNYKYNWVYSTESFSLG
                     KVIDEDYTPTEGYTLDEIFKQVFEDESFICDISNRCLEYTELNHNIETVASLFLEKAN
                     HCTNRITPNIRNSFFDFLSL"
     gene            957..2219
                     /locus_tag="VI413_12625"
     CDS             957..2219
                     /locus_tag="VI413_12625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915514.1"
                     /translation="MVISKISKYKITGFEWILAGLTIYMLGGIFEESIKVVSRILVVL
                     GLLIVFVNAYLIMSQKSPFNGVVQSVFVFYLLWSLFIVLRPFIDQNTLVMNVYTPMNV
                     FGWLSFTMPLVVFLGFKQLSLRSVFKFTYLYGIIGIVLLIINYREIFTVERVFADEEY
                     QQYIGVAGIPATFLSISSYMILFYAFIPTKYKGIGFITISLYLFTALFVARRSEVFTI
                     LIILFFTFYLFVFSTKRGSKFLKLFFVLAVIGVGAIIFYIYSGTTFSFFLNRMSEDTR
                     TGVETLFFKSFKGRPLDWIIGRGIGGTYYCPIADSNYRGTIETGYLYIILKGGLVSLA
                     LFVYFLLYSAYLGFFRSKNMLTKAMASYLIIHVVLLVPFGLPAFSIEYILVWICVMYC
                     QSETWRMKSDTFINGYLYKNERIEITRD"
     gene            2306..>3107
                     /locus_tag="VI413_12630"
     CDS             2306..>3107
                     /locus_tag="VI413_12630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915515.1"
                     /translation="MKILWFANTPCGASAKLYPSLQVGGWLKSLEEQLVKNDDVELYV
                     CFYWKEKLQPFQYNKTKYYPVYRSGNATKIGRILNRALHCDNDQTEVKNLLEVIGIIQ
                     PDVIHVHGTEDNFGLIQSLTKNPVVISIQGILSPYRDKFFSGIPLCSAFWHEGLTPKL
                     LFRSSRFTYNELKKRADRERDILLQAKYIIGRTSWDQRVTRIMAPESHYFLGNEMLRS
                     VFYQKKWSKLHFSTPIRIVTIMSSGLYKGLETIVNTSRILKESNLLPFE"
BASE COUNT          986 a          446 c          566 g         1109 t
ORIGIN      
        1 tttttctttg cttggatagt acatccaaag acatttgatg gaaagcgata ttcgctaaga
       61 gattcaataa aaagaatatt tattaaacct atgattaagc aaatgatttt aagtggaggc
      121 ttctattaca tggataaatc atgctctgat agtataaata agtactttaa cataaaccca
      181 gataatgagt atttacccat ccctgttatg gggattgaaa aaaaaaacaa tgcaatttta
      241 aattcactga ttgtaaaaaa gaataaggat gaaataccat taagttatat tggtcgtgca
      301 gcaaattgga aagtaaatcc agttaaaaaa attatttctg atttatctga aataaagaat
      361 aaaagtaaaa aagaattcat acttcacatt tttacggatg atgttgagga gtttaaaaaa
      421 ctattgtctt atgattcatg cgaaattgaa ataatatatc atgccaatat ttttggtcgc
      481 gaattagacg attttattaa aaacaaaata cttattaact tggcaatggg tacatcggct
      541 ctggaatcag caaaattggg tataccttct attttgctgg atgcttcata cggcgaattt
      601 ccccataatt ataaatacaa ctgggtttat tccacagaaa gtttctcctt aggtaaggtt
      661 attgatgaag attacacacc aaccgaagga tacaccttgg atgagatttt taaacaggtt
      721 tttgaggatg aatcatttat ttgcgatatt tcaaacagat gtttagaata tactgagctg
      781 aatcacaata tagaaactgt tgccagtttg tttcttgaaa aagcaaatca ttgtacaaac
      841 agaattactc cgaatataag aaattcattt tttgatttct tatctctata ataacaggaa
      901 tatttacaat ttaatcaaaa gcagatttat atttaactaa ttgagggggc tgacaaatgg
      961 ttattagcaa gatttccaaa tataaaatta caggttttga atggatatta gcagggctga
     1021 ctatttatat gctaggtggt atatttgaag agtcaataaa ggtggtttct aggatattag
     1081 ttgtgttggg gcttttaata gtattcgtca atgcttatct cataatgtca caaaaaagtc
     1141 ctttcaatgg tgttgttcaa tcagtatttg ttttttattt actttggagc ctctttattg
     1201 ttttacgccc gtttattgat cagaacacgt tagtaatgaa tgtatacacg cccatgaatg
     1261 tctttggttg gctttcattc acaatgccac ttgttgtgtt tttgggcttt aagcaattat
     1321 cactacgaag tgttttcaag tttacctatt tatatggtat tattggtata gttctattga
     1381 ttattaacta tcgcgaaatt ttcaccgttg agcgcgtatt tgctgatgag gaatatcaac
     1441 aatatattgg tgttgcgggt attccagcga catttttatc aatttcatct tatatgattt
     1501 tgttttacgc atttatacca actaaatata aaggcatagg ttttattacc atttctctgt
     1561 atttgtttac tgcattattt gttgcccggc gtagtgaagt gttcacgatt ttaattattt
     1621 tattttttac tttttatctt tttgtgttct caaccaaacg aggttcgaaa tttttaaaat
     1681 tattttttgt ccttgctgtt attggagttg gtgctatcat cttttatatt tactcaggca
     1741 ctacgtttag tttttttctc aatagaatgt ctgaagacac tcgaactggt gttgaaactt
     1801 tgttttttaa aagttttaaa ggtaggcctt tagattggat aattggccgg gggattggag
     1861 gaacctatta ttgccctatt gctgatagca attacagggg tacaattgaa accggctatc
     1921 tctatataat actgaaagga ggattggtta gtttggcgtt gtttgtatat tttcttttat
     1981 attctgccta tctgggattc tttcgctcaa agaatatgct tacaaaagca atggcatctt
     2041 atttaataat acatgtggtt ttgttggttc cgtttggatt gccagctttt tcaattgaat
     2101 atatccttgt ttggatttgt gttatgtatt gtcaatctga aacctggaga atgaaatctg
     2161 acacatttat taatggctac ttatataaaa atgaacgaat cgaaatcact cgcgattgaa
     2221 cgaattggat atgagcaaaa aggtactcag tgttcactat aaaagttgct atatgagtta
     2281 aaataacccc gataattatt tgaacatgaa aatattatgg tttgcaaata ctccttgcgg
     2341 ggcttcagct aagttgtatc ccagtcttca agttggaggg tggctcaaat ctttagaaga
     2401 gcaattggtc aaaaatgacg atgttgagct ttatgtctgt ttttattgga aggaaaaatt
     2461 gcagcctttt caatataata aaacaaaata ctatccagta tatagaagtg gaaacgctac
     2521 gaaaataggg cgtatactta accgcgcact tcattgcgat aatgatcaaa cagaagtgaa
     2581 aaacttattg gaagttatcg ggattattca gcctgatgtg atacatgttc atggaacaga
     2641 agataatttt ggactcatac aatctttaac aaagaatcca gttgttattt caattcaggg
     2701 aattctctct ccctatagag ataagttttt ttcgggtatt cctttgtgtt ctgcattttg
     2761 gcacgaaggt ttaacgccaa agttgttatt tcggtcgagc cgatttactt ataacgaact
     2821 aaaaaaacga gctgaccgag aacgtgatat acttttgcaa gctaaatata tcatcggacg
     2881 aacttcctgg gatcaacgtg ttacccgtat aatggctcca gaaagtcact attttttagg
     2941 gaatgaaatg cttcgttctg tattttatca aaaaaaatgg agtaagcttc attttagcac
     3001 tccaattcgg attgttacaa ttatgagcag tggattatat aaagggttag aaacgattgt
     3061 aaacacttct agaatactaa aagaaagtaa tttattgcct ttcgaat
//
LOCUS       DATDNM010000753         5821 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1479802, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000753 DATDNM010000000
VERSION     DATDNM010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5821
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1479802"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..698
                     /locus_tag="VI413_12635"
     CDS             <1..698
                     /locus_tag="VI413_12635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY6915516.1"
                     /translation="FLLVAFFAFSGTKKAEQNQVWVGLSKETAHQLGTPISSLLAWVD
                     LLKMRHSEDKLIGEMEKDVNRLGIIAERFSKIGSKPDLQMVSLNETLDNAVQYMANRT
                     SQKVAIQCHFPSEEPVFINLNVPLFEWVIENLCKNAIDAMNGIGRIDISVFHRNEEVI
                     VDVKDTGKGIEKSKYKVVFTPGFTTKKRGWGLGLSLAKRIIEEYHGGKIFVKQSELNA
                     GTTFRIILKVIAK"
     gene            866..1441
                     /locus_tag="VI413_12640"
     CDS             866..1441
                     /locus_tag="VI413_12640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEY6915517.1"
                     /translation="MSKFELYNIVLKDLNSETRTVEFDLNDAYFKKIDSPEVQKGNIK
                     AKVSVQKKLSTFELMFTLDGTILIPCDRCLDEMEQAIHYKEKLQVRFGDKFDEIDEIV
                     IVPESDGGINVAWFLYEFIVLNIPMKHVHAPGECNKTMVTKLKKHITRQKGDDDDEDS
                     TLEFDDDDDFSADEVQTDPRWDGLQNISENN"
     gene            1455..1640
                     /gene="rpmF"
                     /locus_tag="VI413_12645"
     CDS             1455..1640
                     /gene="rpmF"
                     /locus_tag="VI413_12645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002562387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEY6915518.1"
                     /translation="MAHPKRKISKQRARKRRTHYKAEAPTLATCSNCGAAHIYHTVCG
                     ECGYYRGKLAIEKLATV"
     gene            1736..2740
                     /locus_tag="VI413_12650"
     CDS             1736..2740
                     /locus_tag="VI413_12650"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007757562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEY6915519.1"
                     /translation="MSKINAVITGVGGYVPEYILNNQELSTMMDTNDEWITTRVGIKE
                     RRILKEPNTGTSFLAAKAIEDLFAKTGTKPEEIDLVICGTTTPDHIYPSCASMAAERV
                     GIKNALAFDLQAACSGFIVALSTATSFIESGKYKKVLVMGAEKMSSITDYTDRTTAPL
                     FGDGAGVVLLEPTTEDYGVVDSLIYTDGVGMKHLHIKAGGSAIPTTKETVEQGLQYTY
                     QEGTNVYKYAVTNMAEVSADIMEKNGLTNDDIAWLIPHQANLRIIDAVVNRTKVDYSK
                     VVINIERFGNTSAASIPLGIWEWENKFKKGDNIILTAFGAGFTWGAVYLKWGYNPSEK
                     "
     gene            complement(2828..3121)
                     /locus_tag="VI413_12655"
     CDS             complement(2828..3121)
                     /locus_tag="VI413_12655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007758092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PG0541 family transporter-associated protein"
                     /protein_id="HEY6915520.1"
                     /translation="MKSIFISFDQAYYEQIQQILTLNHVRGFSGWESVIGRGSKTGEP
                     HYGTHAWPSLNTAIITVVEDEKVKPILADLRVLDGTSERMGIRAFVWNIEDGM"
     gene            complement(3333..>5821)
                     /locus_tag="VI413_12660"
     CDS             complement(3333..>5821)
                     /locus_tag="VI413_12660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008861809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY6915521.1"
                     /translation="MDVGSDTYALRVQGEFKDPKEINNIIVGNFGGKTIRMSDVAIIN
                     DKLEERAQESYTNGLQGATIIVQKQPGSNTVQIAREIQKMLPEIQKGLPSDIKLSVIN
                     DTSDNIIRTIESLAETVIYALLFVMIVVLFFLGRWRATVIIILTIPISLISAFIYLNL
                     TGGTLNIISLSSLSLAIGLVVDDAIVVLENITTHIERGSRPKTAAVNGTNEVGLSIIA
                     STLTIIAVFLPLTMVSGMAGVMFSQLGWMVTIIITVSMICALTLTPMLASQLLRLDPK
                     RSKGFNMVYGPIEHFLDKLDEKYAFLVNWAVRHKIRILIFATLFFFASLVPIFVGWVG
                     TENFPAQDSGFVSGTIEMPIGTRMEITRDVCQRLNSQWKKKYPEIDMINYNVGQASSK
                     NIFGSLFSKNSSNIGTFSIRLVSLNKRKRSSFALTDSIRHDISLLPEIRKSAIKEGGG
                     MSMMGGQSTIDVEVYGYDFAQTDKVAAELLKRIPNIKGLVNTTVSREEYTPEYQVDFD
                     REKLALNGLNVGTASAFLSNRINGLTASLFREDGEEYSIVVAYDPKYRQSIQDVENIL
                     IYNSQGQAVRVKDLGKVVERFTPPTIERKNRQRIITVSSTVSGTTLDVAVASINKELA
                     QIDIPSDVTTKIAGSFKDQQESFSDLGMLLGIIILLVFVVMASQFESVTYPFIIMFSV
                     PFGISGVVLALWLTGSTFNVMTFVGVIMLVGIVVKNGIVMVDYINLNRVRGNGIIRAV
                     VTGGKSRLRPVLMTSLTAILGMLPLAISRGQGSEMWKPMAVTVIGGLTVSTMLTLVVV
                     PVMYTLFAAGGVKRRHKKNKKQALLKELGH"
BASE COUNT         1944 a         1195 c         1065 g         1617 t
ORIGIN      
        1 tatttctact ggttgcattt tttgcctttt ctggaactaa aaaagcagag caaaaccagg
       61 tttgggttgg actttccaaa gaaactgccc atcaattggg aacaccaatt tcatcgctgc
      121 tagcatgggt cgatttgctc aaaatgcgtc actctgaaga taaactaatc ggtgaaatgg
      181 agaaagatgt aaatcggttg ggaataattg cagaacggtt ttcaaaaata ggctcaaagc
      241 ccgacctgca aatggtgagt ttaaatgaaa cattagataa cgccgtgcaa tacatggcca
      301 accgaacttc gcaaaaagtt gccattcaat gtcatttccc ctctgaagaa cctgtgttca
      361 taaatttaaa tgttccatta ttcgagtggg ttattgaaaa cttatgcaaa aatgctattg
      421 atgcgatgaa tggaatcgga cgaattgaca taagcgtttt tcatagaaat gaagaagtaa
      481 ttgtcgacgt aaaagacact ggcaagggaa ttgaaaaaag taaatataaa gttgttttca
      541 cacccgggtt cactacaaaa aaaagaggtt gggggttagg cctttcactt gccaaacgta
      601 taattgaaga gtatcacggt ggaaaaatct ttgtaaaaca atcagaattg aatgccggaa
      661 ctacatttcg aatcatttta aaagtaattg caaaataaaa acacggacaa tttcagctca
      721 aaaccgatca aagaaatcta ccttaagcac tgtatcaatg agctttaagc agtaaaatcg
      781 aataaatttc ataaaataca aaagaaacta ttttataata gaacatattt tcgtaccttt
      841 gcgcggttaa aaatacaagt gaataatgtc aaaattcgag ctatacaata tagtattaaa
      901 ggatctgaat agtgaaacac gcactgttga gttcgactta aacgatgcgt atttcaaaaa
      961 gattgatagc cctgaagtac aaaaaggaaa tataaaggca aaagtcagcg tacaaaaaaa
     1021 gctgagcact tttgaactta tgtttacact ggatggaacc attttaattc cttgcgatcg
     1081 ttgcttggat gaaatggagc aagctattca ttacaaagaa aaactacaag tcaggtttgg
     1141 agacaaattt gatgaaattg atgaaattgt tattgttccg gaatcagatg gagggatcaa
     1201 tgtcgcttgg tttttatacg aatttattgt actaaacatt ccaatgaagc acgtacatgc
     1261 tccgggtgaa tgcaacaaaa ccatggttac caagcttaaa aagcacatca cccgccagaa
     1321 aggtgacgac gacgatgaag attcaacact tgaatttgat gatgatgacg atttttcagc
     1381 agatgaagtt cagacagacc cgagatggga cggtctacaa aatatatcag aaaacaatta
     1441 aataaacaac taagatggca catcctaaga gaaagatttc gaaacaacgc gcaagaaaaa
     1501 gaagaacgca ttataaagca gaagctccaa cattagcaac ttgctcaaac tgcggtgcag
     1561 cacatattta tcacactgta tgcggcgaat gtggctatta cagaggtaaa ttagcaatcg
     1621 aaaaattggc cactgtttaa aaacggtgag cttgtcaata caaactttac gaacaacaaa
     1681 ttaagctcta aacaaatact ttagggcttg atttttatgt acttaacaca aatatatgtc
     1741 taaaattaat gcagttatta caggcgtagg aggatatgtt cctgaataca tcttgaataa
     1801 ccaggaactt agcacaatga tggatactaa cgatgagtgg attaccaccc gcgtaggtat
     1861 caaagaacgt cgtattttaa aagaacctaa tacgggtact tcttttttag cggcaaaagc
     1921 aatagaagat ttgttcgcga aaaccggaac aaagccagaa gaaattgatt tagtaatttg
     1981 tggaaccaca accccggacc acatttaccc ttcgtgcgcc tctatggcag cagaaagagt
     2041 cggaattaaa aacgcattgg cttttgacct tcaggctgca tgttcaggat ttattgtagc
     2101 tctttcaact gcaaccagct ttattgaatc tggcaaatac aaaaaagtac tggttatggg
     2161 tgctgaaaaa atgtcttcta taaccgatta tactgaccgt actactgctc cgttattcgg
     2221 agatggtgcc ggggtagtac ttctagaacc gacaaccgaa gattatggtg ttgttgattc
     2281 attgatttac accgacggtg taggtatgaa acatttacac atcaaagcgg gtggttcggc
     2341 tatacctact accaaagaaa ctgttgaaca aggtttgcag tacacatatc aggaaggaac
     2401 aaacgtatac aaatacgcag tcaccaatat ggctgaagtt tctgccgata taatggagaa
     2461 aaatggattg acaaacgatg atatagcctg gctgatccct catcaggcaa atctaagaat
     2521 aattgatgct gttgtcaatc ggacaaaagt tgactacagc aaagtggtaa tcaatatcga
     2581 acgattcggc aacacttccg ctgcaagtat tccgcttgga atatgggaat gggaaaataa
     2641 attcaagaaa ggtgacaaca ttattctcac tgcttttgga gctggattta catggggagc
     2701 tgtttatttg aaatggggct acaaccctag cgaaaaataa ttattacaac tacctattac
     2761 ataaaaaagc gctttccgaa aattcgggaa gcgctttttc attcaacaga aacgtaatga
     2821 ttttgaatta cattccatct tctatattcc atacaaaagc cctgataccc atgcgttctg
     2881 aagttccgtc cagaacacgc aaatcggcaa gaataggctt taccttttca tcttcaacaa
     2941 ctgtgattat agcagtattt aatgatggcc atgcatgtgt accgtaatga ggttcacctg
     3001 ttttacttcc acgacctata actgattccc aaccgctaaa tcctcgcaca tggttaagcg
     3061 tgaggatctg ttgaatttgt tcgtaatacg cctggtcgaa tgatataaat attgatttca
     3121 tgtgtagata attgttttaa ttggtccatt gaactcgcat atcagatttt cataaatcct
     3181 tcctaaaaaa aaccaaacgg taaagccgag tgggtgaaca tctgatttat gctcatttta
     3241 tacgtgaatt atttttttga atgaaacgag ttccaccaga aatgaaaccc gcttcattgt
     3301 ttcaaaattc ttattaatag ttttgaaaca aattagtgcc ccaactcttt caacaaggct
     3361 tgttttttat tctttttgtg cctacgtttt actccaccag cagcaaaaag tgtatacata
     3421 acaggaacaa caaccaacgt gagcattgta gaaaccgtca aaccaccaat cacggttaca
     3481 gccattggtt tccacatttc cgaaccttgt ccgcggctta ttgcaagtgg taacatacca
     3541 aggattgcag tcaaactggt catcaatacg ggacgtaaac gtgatttacc accggtaacc
     3601 accgcacgta taataccatt tccacgaacg cggttcaggt tgatataatc caccattaca
     3661 atgccgttct tcaccacaat acctacgagc ataattacac caacaaatgt cattacatta
     3721 aaggttgaac ccgtcaacca caaggccaaa acaacccccg agattccaaa tggcaccgag
     3781 aacatgatga taaatggata agtgaccgac tcgaactgag aagccataac cacaaatact
     3841 aacaaaataa tgataccaag caacattcct aaatcggaaa atgattcctg ttgatcctta
     3901 aacgatccag caattttagt tgttacatcc gaaggtatat ctatttgagc aagctcctta
     3961 ttaatacttg caacggccac atcaagtgtc gtacctgata cagtcgacga cacggtaatg
     4021 atacgctgac gatttttgcg ttcaatagtc ggcggtgtaa atcgttcaac aactttgcca
     4081 aggtctttta cacggacagc ttgtccttgc gagttgtaaa tcaatatatt ttcaacatct
     4141 tgaatcgact gacgatattt cggatcataa gcaaccacaa tagaatactc ttctccatct
     4201 tcccggaaca gtgatgctgt caaaccatta atacgattgc taaggaaagc agaagctgtc
     4261 ccaacgttca atccattcaa agccaatttt tcacgatcaa aatcaacctg atattcggga
     4321 gtatattctt cacggctcac tgttgtgtta accaagcctt taatattcgg aatccttttg
     4381 agtaattcag ctgccacttt atcggtttga gcgaaatcat atccataaac ttctacatct
     4441 atagttgact ggccacccat catgctcatt ccaccgcctt ctttaatcgc tgatttccga
     4501 atttcaggca aaagacttat gtcatgacgt atgctgtcag ttaatgcaaa actagaccgt
     4561 ttacgtttat tcagactcac caaacgaatg gagaaagtac caatattact tgaattttta
     4621 gaaaacaacg acccaaatat atttttactg cttgcctgac caacattgta atttatcatg
     4681 tcaatctcag gatacttctt tttccattga ctattaagtc tctgacatac atctctggta
     4741 atttccattc gagtgccaat aggcatttcg atagttcctg acacaaagcc actatcctga
     4801 gccggaaagt tttcggtacc tacccaacca acaaatattg gaaccaaact ggcaaagaaa
     4861 aatagcgtag caaatatcaa tatcctaatt ttatgacgaa ctgcccagtt taccaaaaat
     4921 gcatatttct cgtctaactt atccaaaaaa tgctcgattg gtccgtaaac catattgaat
     4981 cctttgcttc gtttagggtc aagccgcaat aactgtgaag ccaacattgg agttagagtc
     5041 aacgcacaaa tcattgacac agtgatgatt atagtcacca tccaaccaag ctgagaaaac
     5101 attacaccag ccatacctga aaccatggtc agtggaagga ataccgcaat gatagtcaac
     5161 gtcgaagcaa taattgaaag cccaacctca ttggtaccat ttacagcagc agttttagga
     5221 cgactaccac gttcaatatg tgtagtgata ttctcaagta ccacaatggc atcatccact
     5281 actaacccga ttgccagcga tagcgaactc aacgaaataa tattcagtgt gccacccgta
     5341 agattcaaat aaatgaaagc tgagattaat gatatgggaa ttgtgaggat aataattacg
     5401 gttgccctcc aacgaccgag gaagaacagc actacaatca ttacaaacag taatgcataa
     5461 attacggttt ccgctaaact ttcgattgta cggataatat tatccgatgt gtcattaata
     5521 acactcaact taatatccga gggtagccct ttctgaattt caggaagcat tttctgaatt
     5581 tcacgggcaa tctgaaccgt attcgacccc ggctgctttt gaacgattat cgttgcaccc
     5641 tgcaaaccgt ttgtataact ttcctgcgcc cgctcctcca gtttatcatt aattatggcc
     5701 acatcagaca ttctgattgt ttttcccccg aaattgccta caatgatatt atttatctct
     5761 tttggatctt taaattctcc ctgcacccgc aaggcatagg tgtcgctacc tacgtccatc
     5821 g
//
LOCUS       DATDNM010000754         2084 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_89930, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000754 DATDNM010000000
VERSION     DATDNM010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89930"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(212..814)
                     /locus_tag="VI413_12665"
     CDS             complement(212..814)
                     /locus_tag="VI413_12665"
                     /inference="COORDINATES: protein motif:HMM:NF021254.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosortase/archaeosortase family protein"
                     /protein_id="HEY6915522.1"
                     /translation="MNLRTFKFPEKFAQFKGAILFAVVLMLSNLFWKYNVLGDESESI
                     NSTVTFWGMDISTTFTLLAQHVAHVSEKILQLLRFDITLKPDNTLRYANGNSVVVIWS
                     CTGLKQAYITLFILTFAHGPWLKKLWYIPLCLLGVYAFNIFRITFIAGCMENHPHWFE
                     FLHLYLFKYVFYGIIFLMWVYWEERIAGKGNEKQKMTEPA"
     gene            complement(823..1851)
                     /gene="tsaD"
                     /locus_tag="VI413_12670"
     CDS             complement(823..1851)
                     /gene="tsaD"
                     /locus_tag="VI413_12670"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEY6915523.1"
                     /translation="MNSTIILGIESSCDDTSASVIRNGVMLSNVIANQDVHTSFGGVV
                     PELASRAHQLNIIPVVHEALKRAGVDKSELSAIAFTRGPGLLGSLLVGTSFAKGFAQA
                     LNIPLVDVNHLQAHVLAHFISEGKPDEHQPEFPFLCLLVSGGNSQIVLVKAYNDMEVI
                     GQTIDDAAGEAFDKCAKVMGLPYPGGPHIDRLAKEGNPKAFAFNKPQIPDYNYSFSGL
                     KTSFLYLLRDKIKENPTFVEENMNDLCASIQATVVEILMNKLRKAAKDLKINQIAVAG
                     GVSANSALRQAFHDHSKKYGWKVFIPPFSFTTDNAAMIAITGYFKYQHADFCSIEEVP
                     FSRVTTKL"
BASE COUNT          587 a          397 c          503 g          597 t
ORIGIN      
        1 gggttatagt aggaataaag aagggatatc tatgggataa aagtaggaat aggaataaca
       61 tgatcaggag atgcccataa ccaaccccga ataaagacta tgttgatgag catgggtaat
      121 gaactgagtc aaccgattgg aaaatgttga ccgggtattg agaagatatg aaggtaggaa
      181 tagttgtaga tgaagagccg ggagatgcag actaagcagg ctctgtcatc ttctgttttt
      241 cattgccttt tccggcaatg cgttcttccc agtataccca cattaaaaat atgattccgt
      301 agaacacgta tttaaagagg tataaatgaa gaaattcgaa ccagtgagga tggttttcca
      361 tgcaacctgc tataaatgta atccggaaaa tgttgaaggc ataaactccc agcaggcata
      421 acgggatgta ccatagcttt ttcagccacg ggccatgggc aaaagttaaa atgaataaag
      481 tgatgtaggc ctgtttgagt ccggtgcacg accagattac taccaccgag ttgccgttgg
      541 catacctgag agtattgtcg ggctttaagg taatatcgaa gcgcaggagt tgcaaaattt
      601 tttcggaaac atgggccaca tgctgtgcca gtagggtgaa agtggtcgaa atatccattc
      661 cccaaaatgt gaccgttgag ttgatacttt ccgattcgtc gcccagcacg ttgtacttcc
      721 agaagaggtt ggagagcatt aacactacag caaaaagaat cgctcctttg aattgagcaa
      781 atttttccgg aaatttaaag gtgcggagat tcattttggt tgctataatt tggttgttac
      841 gcgcgaaaag ggtacttctt cgatggagca gaaatcggca tgctggtact tgaaatagcc
      901 ggtgatggca atcatggctg cattatcggt ggtaaatgaa aacggtggaa taaatacttt
      961 ccagccgtac tttttgctgt ggtcgtgaaa ggcctggcgc aaagccgagt tggccgaaac
     1021 accacccgca acggcaattt gattgatttt taaatccttt gcggcttttc ggagtttatt
     1081 cattagaatt tctacaacag tggcctgtat ggaagcgcac aaatcgttca tgttttcttc
     1141 cacaaaggtc gggttctcct tgattttgtc gcgcaataaa tacaggaacg aagttttcaa
     1201 tccgctgaaa ctgtaattgt aatcgggtat ctgcggcttg ttgaatgcaa atgctttggg
     1261 gttgccctct ttggccagtc ggtcgatatg cggtccgccg gggtagggca gtcccattac
     1321 tttggcgcat ttgtcaaagg cttcgccggc tgcatcgtcg atggtttgcc ctataacttc
     1381 catgtcgttg taggctttta ccagcacaat ctgggagttg ccacctgaaa caagcaggca
     1441 caaaaacgga aattcgggtt ggtgctcatc gggttttccc tcgcttataa aatgggccaa
     1501 cacgtgtgcc tgcaagtgat ttacgtcaac cagcggtatg tttagtgcct gggcaaaccc
     1561 tttggcaaat gaggttccta ccaacaatga tccgagtaag ccgggtccgc gtgtaaaggc
     1621 gatggcgcta agttcgcttt tatctactcc ggctcgtttc aatgcttcat gcaccacagg
     1681 aataatattg agttgatggg cacgggaagc cagttcgggt acaacaccac caaaactggt
     1741 gtgaacatcc tgattggcaa tcacatttga tagcattacc ccgttccgga ttacggaagc
     1801 tgaagtgtca tcgcaagatg attcgattcc taatataatg gttgaattca tgagttttta
     1861 aatgtgcctg aatttgagta atatatttag tttgattgtg tgtttttgca aaatatttaa
     1921 ctcaaaattg aaacgctgat tatgctggca tggcaattgt aatttgtatt tttttattca
     1981 ttaaatcgtt tacttatggg catttcatta tggtttcaca aaattaatgg ttacttttgc
     2041 gaaataaagt ccaaaagtat aaaaaaaaca gctaagatat tagg
//
LOCUS       DATDNM010000755         2950 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_197758, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000755 DATDNM010000000
VERSION     DATDNM010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2950)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2950
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197758"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..838
                     /locus_tag="VI413_12675"
     CDS             <1..838
                     /locus_tag="VI413_12675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEY6915524.1"
                     /translation="IGTESYPGENMKLLSFAAEEGVKYAQKAGATSIEELRKMPADKL
                     PMGWGVGSSWPVIDGYVIPDVQYKLYNQGKYNDVPVIVGYNSDEGLSFSPGKTPQECI
                     DAVKKRYGKLADDLLKAYPVGENVVSRSARNLSRDAAFGWHNWTWAKLQSQTGKSKVY
                     YYFFDQHPDYPEGSTEYDHGSPHAQDVSYVFQHLNTSDPNTSKSDVTISEAMGNYWIN
                     FVKSGNPNGGTLPQWTPFNHNSPMVMYFEDTPHLGAVPDEAPLEVLDRYFKWKIGSSE
                     TK"
     gene            853..>2950
                     /locus_tag="VI413_12680"
     CDS             853..>2950
                     /locus_tag="VI413_12680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005830303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HEY6915525.1"
                     /translation="MKKHVFKIVMLFSLLISTANAQSYSVTGTGVKAEINALNVEIQF
                     YTPSIVRVVKYPKGSVCAKQSLSVVKSPEKVTFSTKRTGDNLVVTSKALSVGINLNNG
                     QVNFNSVAQTPLLKEKTGTTSFTEMNDAGEKTYTVSQSFELDKDEAIYGLGQQHQGKM
                     SKRNVSLKMVQGNLDDYIPFFQSVKGYGLFWDNYSPTYFDDNQERTAFKSEVGDCIDY
                     YFMNGGNADGVIAGMRSLTGQAPMFPLWTYGFWQSRERYKTQDELVDVVKKFRELNVP
                     LDGIIQDWQYWGNNYLWNAMEFLNPGFQDPQKMVDDVHGLNAHMIISIWSSFGPKTKQ
                     FSELEKMNALFNFDTWPASGSEKFPPNMDYPSGVKVYDAYNPKARDLYWKHLNEGIFK
                     LGMDGWWMDSTEPDHLSEKPADFDNKTYLGSFRKVRNAYPLMSVGGVYQHQREVSSDK
                     RVFILTRSAFAGQQRYGANTWSGDISASWETLKNQIAAGLNFSLSAIPNWNSDIGGFF
                     LWKYKNPLENPDYRELHVRWIEFGTFCPMMRSHGEGYPRELYQFGKKGNPTYDAIEKY
                     INLRYSFLPYIYSASWQVTANQSSMMRALVMDFASDKQAIELNDEFMFGKSLLVSPVT
                     EPMYWKNRLQGKDSVKVEDYSSVKTKAVYLPKGTDWFDFWTGEKVNGGQTVQKEVPLD
                     IIPLYVKAGSVLPVGPK"
BASE COUNT          861 a          566 c          711 g          812 t
ORIGIN      
        1 cattggcaca gagtcttatc cgggtgaaaa tatgaagctg ttgtcgtttg cagccgagga
       61 gggtgttaag tacgctcaaa aggcaggtgc gacttccatc gaagaacttc ggaaaatgcc
      121 cgccgacaaa ctgccgatgg gttggggggt aggcagttcc tggccggtga tagatggcta
      181 cgtaattcct gatgtgcaat ataaattata caatcagggc aaatacaacg atgtgccggt
      241 gattgttggc tataattcgg acgaagggct gagcttttcg ccaggaaaaa cacctcaaga
      301 atgtattgat gcggtaaaaa aacgttacgg aaaattagcc gacgacttgc tcaaagccta
      361 tcctgtgggt gaaaatgtgg tttcccgctc tgctcgcaac ctgtcgcgcg atgccgcttt
      421 cggctggcat aactggacgt gggctaaatt gcaatcacag accggtaaat cgaaggtgta
      481 ttattatttc ttcgatcaac accccgatta tcccgaaggt tcgaccgaat acgatcatgg
      541 atcgccccat gcgcaggatg tttcgtatgt ttttcagcat ttaaatacat ccgatcccaa
      601 tacttccaaa tcggacgtaa ccatttcgga agctatgggc aactattgga taaattttgt
      661 gaagtcagga aatcccaatg gaggtacttt gcctcaatgg actccattta accataatag
      721 tccaatggta atgtattttg aagatactcc acacttagga gcagtacccg atgaagcacc
      781 gcttgaggtg ttggatagat attttaaatg gaaaataggt agtagtgaaa caaaataaat
      841 ttaatagatt aaatgaaaaa acacgtattt aaaattgtca tgttgttctc gctcttaata
      901 agtactgcaa atgcgcagtc ttacagcgtg acaggtacag gagtgaaggc tgaaattaat
      961 gccttaaatg ttgaaattca gttttatacc ccttctattg taagggttgt gaagtatccc
     1021 aaagggagtg tttgtgcaaa gcagagtcta tcggtagtaa aatctcctga gaaagttact
     1081 tttagcacta aaagaaccgg agataatctt gttgtgacaa gtaaggcgtt gagcgttgga
     1141 attaacctga ataatggaca ggtaaatttt aattcagtag ctcagacccc attgctaaaa
     1201 gaaaaaacag gaacgacgtc atttaccgaa atgaatgatg ccggagaaaa aacatacact
     1261 gtttctcagt ctttcgaatt ggataaggat gaagcaatct atggattggg ccagcagcac
     1321 caaggcaaga tgtcgaaacg caacgtaagc cttaaaatgg tgcagggtaa tctcgatgac
     1381 tatatcccat tttttcaatc cgttaagggc tatggcctgt tttgggataa ttattcgcct
     1441 acttattttg atgacaatca agagcgaaca gcttttaaat cggaagtggg agattgcatt
     1501 gattactatt ttatgaacgg tggcaatgcc gatggtgtga ttgccggaat gcgcagcctt
     1561 accggacagg ctccaatgtt tccgttgtgg acgtacggat tctggcaaag ccgggaacgc
     1621 tataaaactc aggatgaatt agtggatgtt gtaaaaaaat tccgagaact gaatgtgcct
     1681 ttggatggaa ttattcagga ctggcaatat tgggggaata attatttgtg gaatgccatg
     1741 gaatttctca atccgggatt tcaggatcct caaaaaatgg tggatgacgt gcacggactt
     1801 aatgcccaca tgattatctc gatttggagt tcgtttggac ccaaaacaaa gcaattcagt
     1861 gaattagaga agatgaatgc tttgttcaat ttcgatacat ggcctgcatc cggatccgaa
     1921 aaatttccgc ccaacatgga ttatccttcc ggtgtaaagg tttatgatgc gtacaatccg
     1981 aaagcgcgtg atctatattg gaaacatctg aatgaaggca ttttcaaact gggtatggat
     2041 ggctggtgga tggattctac cgagccggat catttaagtg agaaacctgc tgatttcgat
     2101 aataagacct atttaggcag tttccgaaaa gtacggaatg cttatccgtt gatgtcggtc
     2161 ggtggagttt atcagcatca aagggaggtt tcttccgata aacgggtttt tatccttacc
     2221 cgttcggctt ttgcaggtca gcaacgttat ggagccaata catggtcggg agacatttcc
     2281 gcatcatggg aaactttgaa aaaccagatt gctgccggtc tcaatttctc actttctgcc
     2341 attcctaact ggaactcgga tattggcgga ttctttttgt ggaaatacaa aaatcccctc
     2401 gaaaaccctg attacaggga gttgcacgtc cgttggatag agtttggaac cttttgtccg
     2461 atgatgcgtt cgcatggcga aggatatccg cgcgagcttt accagtttgg caaaaagggc
     2521 aatcccactt acgatgcgat cgaaaaatat atcaacctga gatatagctt tttgccatac
     2581 atctattctg catcgtggca ggttacggcc aatcagtcga gcatgatgcg tgcgctggta
     2641 atggattttg cctccgacaa acaggccatt gaactcaatg atgaatttat gtttggcaaa
     2701 tcgttgctgg ttagcccggt taccgaaccc atgtattgga aaaaccgctt gcagggtaaa
     2761 gattcggtta aggtagagga ttacagttcg gtaaaaacaa aagctgttta cttgccgaaa
     2821 ggaacagatt ggttcgactt ctggacgggt gaaaaagtaa acggcggaca aaccgttcaa
     2881 aaagaagttc ctttagatat tatccctttg tatgtaaaag ccggttctgt attacccgtt
     2941 gggcccaagg
//
LOCUS       DATDNM010000756         7242 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_304849, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000756 DATDNM010000000
VERSION     DATDNM010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7242
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304849"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3202)
                     /locus_tag="VI413_12685"
     CDS             complement(<1..3202)
                     /locus_tag="VI413_12685"
                     /inference="COORDINATES: protein motif:HMM:NF013239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HEY6915526.1"
                     /translation="MKLKKWFYLVLFFAITGSMFSQKYNPVANTAATVVEGNVRFTVL
                     TPRVIRMEWSANGKFNDFASLTFVNRYLSVPRFSKSISNGELEITTDAVKLKYKLNSG
                     MFSDKNISVSFVLNNQTKTWTPGLANNGNLFGTTRTLDQCDGAPRELEKGLISRDGWM
                     LFDDSERPLFDNSEWPWVMARPDNKQQDLYLFTYGTDYKQALKDYTDIAGKVAMPPRF
                     AFGAWWSRFREYTDTEFRELVGEFESHDVPLDVFVIDIDWHYRMLPEFYKNGQLQTDQ
                     AGEGYGWTGYTWDKNYFADPDKFLKWTNEKNLKTCLNLHPASGIQPFEERYPQMAKSM
                     GIDPATKKYVPFDITDKKFATNYMNEVLRPLENSGVDFWWLDWQQWGNTKIPGVNPTF
                     YLNYVHYSDMERQNKVRPLIFHRWGGLGNHRYQIGFSGDTHNTWKSLAYQPYFTSTAA
                     NVGFGYWSHDIGGHFGHPDSPEMYTRWIQWGIFSPVFRTHCTEAASLERRIWAYPLDY
                     FKVMREAYLLRYSMIPYLYTEAHNTYETGVSIVHPLYYDYPDSEIAYNCPNQYMFGRD
                     MMVAPVLRPIGKDSLFVMQKMWLPEGKWFEWSTGTMHEGGKTIEMPVTIDDIPVFVKE
                     GAIIPMQNKASRVEEKPVNSVILTIFPGKKGSTKLYEDEGNNNNFKSGAFSNTPIAFE
                     NKEGVFDITISAVEGTFPGMLKTRGYELRFPCSFAPTEVLVNGRPVVYKEIAQPGSWN
                     YNGENFETRVYVPESATDKPVSIKINFPAYNPALISGLKAKVKLMRKFETFRVTHAWD
                     RGRYEVADIASLSQVGQLAEYAPGKLKSLVDDFDAKWNSALLVIQNICAVNNEYKPYY
                     QLLKLYGSIAEAPVVKSTSSQIEFDATATIEMTADQTDKIYYTTDGSQPTLNSKQYNG
                     VITLPVPVTVKAIACPVAGGSCSSVTATSFYKKNTGLKYKMYKGSWDKVPDFTKLLVD
                     QEGHSYDFKLKSFLPNREQFAVVYEGYLTVPATAKYKFYLSSDDGSKLYINNQLLIDN
                     DGLHSEQLKTGELKLPKGEVPVRVEYFQGGGGSGLSV"
     gene            complement(3209..5737)
                     /locus_tag="VI413_12690"
     CDS             complement(3209..5737)
                     /locus_tag="VI413_12690"
                     /inference="COORDINATES: protein motif:HMM:NF025563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RICIN domain-containing protein"
                     /protein_id="HEY6915527.1"
                     /translation="MKKHKRRKTLLKFSILFLGALQIFALTAQTNKYKTEGLLLLDNL
                     NTKFYSTSSAMYVESVNTTTQVKSGTAFLWPAAHMMRALLWGSLLDSKYDTRLQSYVT
                     KMSWYINGEGYGCIQNGERFFDDNGLVGDVLMDVYQKKIRTQAVLDKSMFALKYCIKY
                     KDAQWGLPQKESELNKGIFYMGPVDPLSNAYAKYYTITGDTNYLNVAKTYFNKFNDYT
                     LKLKSPSSLLFVSGSTFANGVWTPPNEGPRACNTAAVVLLGIRLYQITGEAKYLNASK
                     AMADAILTRFYKYNGGFAEVSYWGGNYSVEMLCEMYEIDRDLKWYNAAKDICDFLIDK
                     SRDLKGYYPDGPNDSGYWNDVRTNTAAPATVSMMSQACAANAILRFAYLDLNKPLAKG
                     IYKIVNVASNKALSVKSPNTIANGSIITTNDFADKKSQKWMLDIDNTGNYTLKSFENG
                     SSVAVKNCSPVDGNTLEIDSNLVGDCTKFKIESIGSGQYKLAQKAGKSVDAGVTSQND
                     DAVFLAVPADVASQKWTIERLEPKVYWRSVTKDTLVTTAQGLSLSVDVTSTAEAIRKV
                     EYYINGVLTYSTILSPYTYSWKPKTSGQYEVYAFAYDKLGNIGYSTKIKVTVLCVEQG
                     VYKIVNSATNKSLSVIASKTNTDAAEITTTTYQTANYQQWKITADSLGYYTFAPLSTG
                     FNMGNDSCHTDNDTKIKQFSAAKGDCQKYYMVDLGLGVYQICAKNTTKAISAKLVATN
                     DVPVYLWEKADQSNQKWKFTSITTGVIATQAENVDIYPNPVVNTLTIGGDFQGADIEI
                     YTLTGLKTLTSKSKQIDVSGLSSGVYILRMKLNNAIYKAKFIKK"
     gene            complement(6122..>7242)
                     /locus_tag="VI413_12695"
     CDS             complement(6122..>7242)
                     /locus_tag="VI413_12695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007764988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6915528.1"
                     /translation="VLGVFELSADGTKAIGTDRLVFDGHPVNTTTEGPKFYKRNGFYY
                     ILCPAGGVKPGWQLALRSKNVYGPYEEKRVLEQGKSDINGPHQGAWVDTPDGKQDWFF
                     HFQDLYAYGRAVHLQPMKWVNDWPVIGEDKDGDGCGNPYSVYKKPAVGKSYPIATPVE
                     SDEFDGLTLGLQWQWQANYNPLWCFPAGDKGYLRLFAWNLIGEAKNLWDAPALLMQKF
                     PAPDFKATTKLTFSPFKAGERAGLVVFGQDYATLTINSTDKGLVLNQSACKNAPKGTR
                     EMVNDSVAVSKNTVYFRVEVKQTKAKKNNEGIQEPKATCTFSYSLDGEKFMTFGKPFT
                     AWEGKWVGAKVGIFCQRPQPLNDSGYADVDWFRVEAVK"
BASE COUNT         2052 a         1612 c         1383 g         2195 t
ORIGIN      
        1 ctacggataa accggaacct ccacctccct gaaaatactc tacacgaaca ggcacctccc
       61 cttttggaag cttaagttca cctgttttca gttgctcaga gtgtaatcca tcgttatcaa
      121 tcaacaattg attgttgata taaagcttgc ttccatcatc ggaacttaaa tagaatttat
      181 atttagcggt agccggtaca gtcaaataac cttcataaac aacagcaaat tgctcgcgat
      241 taggcaggaa agatttcaat ttgaaatcat acgaatgtcc ttcctgatca accaacagct
      301 ttgtaaagtc tggcacttta tcccacgaac ctttgtacat tttatatttc aagcccgtat
      361 ttttcttgta aaatgaggtc gctgtaaccg agctgcatga gccacctgcc acaggacaag
      421 caattgcctt gacggttacc ggaaccggta gcgttattac tccgttatat tgttttgaat
      481 tgagcgttgg ctgtgaacca tccgttgtat aataaatctt atcggtttgg tctgctgtca
      541 tttctatggt agctgttgca tcgaattcta tttgcgagct tgtgcttttt acaaccggag
      601 cttctgcaat acttccatac agcttcaaca attgataata aggtttatat tcattattta
      661 cagcgcagat attctgaatt accaacaaag cgctgttcca tttagcatca aaatcatcaa
      721 ccagcgattt taatttcccg ggagcatatt cagccaactg tccaacctgc gataatgaag
      781 ctatatcagc aacttcgtat cgtccccgat cccacgcgtg cgttacccgg aaagtttcga
      841 atttacgcat aagtttcact tttgctttca ggcccgaaat taaggccgga ttgtaagccg
      901 gaaaattgat ttttattgaa actggtttat cagtagctga ttctggtaca taaacacgtg
      961 tttcaaaatt ttccccattg taattccacg agcccggctg cgctatttct ttataaacaa
     1021 caggccgacc attgacgagc acttcggttg gagcaaaact acatgggaaa cgcaattcgt
     1081 atcctctggt tttcaacata cccgggaatg taccttcaac ggccgaaatt gttatatcaa
     1141 aaactccctc tttattttca aaagcgatgg gcgtgttaga gaaagctccc gatttaaaat
     1201 tattgttgtt tccttcatct tcgtaaagtt tggtggaacc ttttttaccc gggaagatgg
     1261 tcaggattac tgaattcacg ggtttttctt ccaccctcga agccttattc tgcatgggga
     1321 tgatggctcc ttcttttaca aataccggaa tatcatcaat tgtaactggc atttcgatgg
     1381 tttttccacc ttcgtgcata gtgccggtgc tccattcgaa ccatttccct tcgggtaacc
     1441 acattttctg cattacgaaa agactatctt ttcctatggg gcgaagaaca ggtgcaacca
     1501 tcatatcacg accaaacata tactgatttg gacaattata ggcaatttcg ctatcaggat
     1561 aatcgtaata aagcgggtga acaattgaga cacccgtttc gtatgtattg tgtgcttcgg
     1621 tgtaaagata gggtatcatg gaatatcgaa gcagatacgc ctcacgcata accttgaaat
     1681 aatcgagcgg ataagcccaa atacgccgtt cgagtgaagc tgcctcggta cagtgagttc
     1741 tgaagacagg gctgaagatt ccccattgaa tccagcgtgt atacatctcc ggcgaatcag
     1801 gatgcccgaa atgccctccg atatcatgac tccaatagcc aaagcccaca ttggcagctg
     1861 ttgaagtaaa ataaggctga tatgctaacg atttccaggt gttatgtgtg tctcccgaaa
     1921 aaccaatctg ataccgatga tttccgagtc caccccaccg gtgaaaaatc agtgggcgaa
     1981 ctttattctg gcgttccata tcgctgtaat gaacataatt caggtaaaac gtaggattca
     2041 cacccggaat ttttgtatta ccccattgtt gccagtcgag ccaccaaaaa tcaacgccgc
     2101 tgttttcgag tgggcgcaaa acttcattca tataattggt tgcaaatttt ttatcagtaa
     2161 tatcaaaagg cacatatttt tttgtagccg ggtcaattcc catcgactta gccatttgcg
     2221 ggtatctttc ttcgaaaggc tgaattccgg aagccggatg aaggttcaga catgttttca
     2281 ggtttttttc gttggtccat ttcaaaaatt tgtcaggatc ggcaaagtag tttttatccc
     2341 atgtatagcc cgtccagcca taaccttcac cagcctgatc tgtttgtaat tgaccgtttt
     2401 tataaaactc aggcagcatt ctgtaatgcc agtcgatatc aatgacaaaa acatcgagcg
     2461 gcacatcgtg cgattcgaat tcgccgacca attccctgaa ttcagtatca gtgtattctc
     2521 tgaaacgtga ccaccaggct ccaaatgcaa aacgtggtgg catagccact ttacctgcaa
     2581 tatcggtata atctttcaat gcctgtttgt agtcagttcc gtatgtaaac agatacaaat
     2641 cctgctgttt gttgtcagga cgagccataa cccacggcca ttccgaatta tcaaacaatg
     2701 gtcgctcgct gtcgtcaaat aacatccagc cgtcgcggga gatcagacct ttttccaatt
     2761 cacgcggagc tccgtcacat tgatcgagtg tgcgtgttgt tccaaacaaa ttaccgttgt
     2821 tcgccaggcc cggcgtccag gtttttgtct gattattcaa tacaaaactg acactgatgt
     2881 ttttatcaga aaacatacct gaattcagtt tatatttcag ttttacagca tcagtcgtaa
     2941 tttcgagctc tccgttcgat attgacttac taaacctggg cactgataga tatctgttta
     3001 caaatgtcaa cgatgcaaaa tcattaaact taccgttagc cgaccattcc atacgaataa
     3061 cccgcggagt cagaactgta aatctaacat tcccttcaac tacagtagcc gccgtatttg
     3121 ctacggggtt gtatttttga ctaaacatac taccggttat tgcaaaaaac aaaaccaaat
     3181 aaaaccactt tttcaatttc attcgtactt attttttaat gaatttagcc ttgtagatag
     3241 cattattaag tttcatccgc agaatatata cacctgagga taacccggaa acgtctatct
     3301 gtttactttt cgaagtaagt gttttcaagc ctgtcagagt ataaatttca atatcggctc
     3361 cctgaaagtc acctccaata gtcaacgtat tgaccaccgg attgggatat atatctacat
     3421 tttcggcttg agttgcgatt acaccagtag ttatggaagt aaatttccac ttttggtttg
     3481 actgatctgc tttttcccac aaatacactg gcacatcgtt agtagcaacg agttttgcag
     3541 aaatagcttt ggtggtattt ttggcacata tctgatatac tcctaaacca agatcaacca
     3601 tataatactt ctggcaatca cctttagctg ctgaaaactg cttaattttg gtatcgttat
     3661 cggtgtggca tgagtcattg cccatattaa aaccagtgct taaaggagca aatgtatagt
     3721 aacctaagga atcggctgtt attttccact gctgataatt cgcagtctga taggtggttg
     3781 tagtaatctc tgccgcatca gtattagtct tcgaagcaat aacactcaag cttttgttgg
     3841 ttgcagaatt aacgatttta taaacccctt gttcaacaca caacacagtt acttttattt
     3901 tagttgaata tcctatattt ccgagtttgt cgtatgcaaa ggcatagact tcatactggc
     3961 cggaagtttt tggtttccag ctataagtat aaggtgaaag tatagtgcta taggtcaaaa
     4021 caccatttat atagtattcc actttcctta tagcttcggc agtgcttgtc acatccacgc
     4081 ttaatgacaa tccctgggct gttgtaacaa gagtatcttt tgttaccgac cgccaataaa
     4141 cttttggttc aagacgttcg attgtccatt tctgacttgc aacatctgcg ggcacagcca
     4201 aaaaaacagc gtcatcgttt tgcgaagtta ctcctgcatc aacagatttt ccagcttttt
     4261 gcgccagttt atattgtccg ctgccaatac tttctatttt aaacttagta caatctccaa
     4321 caagatttga atcaatttcg agcgtatttc catcaacggg tgaacagttt tttacagcaa
     4381 ctgacgatcc gttttcaaat gatttgaggg tataattacc tgtgttatca atatccaaca
     4441 tccatttttg ggatttttta tccgcaaaat cattggtagt aattatgctg ccattagcaa
     4501 ttgtattcgg agattttacg ctcagggctt tgtttgaagc cacattcact attttataaa
     4561 taccctttgc aagcggttta tttaaatcga gataagcgaa tcgtaaaatt gcattagctg
     4621 cacaagcctg cgacatcatg cttacggttg caggcgcagc tgtattggtt ctcacatcat
     4681 tccaataacc tgaatcattg ggaccatcag gataatagcc ttttaaatcg cgtgatttat
     4741 caatcaggaa atcacaaata tccttcgcgg cattgtacca tttcaggtct ctgtctattt
     4801 catacatttc gcaaagcatc tccacagagt aatttccacc ccagtatgac acctcggcaa
     4861 aaccaccatt gtatttataa aatcttgtca atatagcatc ggccatcgct ttcgaagcat
     4921 tcaggtattt agcttcaccg gtaatttggt ataaacgaat gccaagaagc actacggcag
     4981 ccgtgttaca ggcacgtgga ccttcgttgg gtggagtcca tacgccattt gcgaaagtag
     5041 aaccactaac aaaaagaagt gaagatggac ttttaagttt aagcgtatag tcgttgaatt
     5101 tattaaaata ggttttagcc acgtttaaat aattcgtatc gccagtgata gtgtaatatt
     5161 tggcataagc atttgaaagt ggatcaacgg ggcccatgta aaaaatgccc ttattcagtt
     5221 cgctttcttt ttgtggtaaa ccccattgag catccttata ttttatacag tatttcagtg
     5281 caaacatact tttatccaat acggcttgtg tgcggatttt cttttggtac acatccatta
     5341 gcacatcgcc aacaagacca ttatcatcaa aaaagcgttc cccattctgg atacagccat
     5401 agccttcgcc attaatgtac cagctcattt tagttacata agattgcagg cgggtatcgt
     5461 atttggaatc aagcaatgat ccccaaagaa gtgcccgcat catgtgagcg gcaggccaca
     5521 gaaaagcagt tccagattta acctgggtag ttgtattaac cgactcaacg tacatagcac
     5581 ttgaagtgct ataaaacttt gtattaagat tatcaagcaa caacagtcct tctgttttgt
     5641 atttgtttgt ttgggcagta agtgcaaaaa tttgtagcgc tcccagaaat agaattgaga
     5701 atttgagtaa agtttttctt ctcttgtgtt ttttcatgac attaaataat gggtagtaaa
     5761 ccgaacaacg aaaagtaaag atgtagccgg ttaatttaac gccaaagata cttattataa
     5821 aagcgcaagg atgacaatat agtaccaaat aacattaata attagtcaaa aaactcatta
     5881 tttacaagga tttaaaagtt ctctgaaagg cgaaatatca ctcaaacaac ccataaataa
     5941 gaaagagata atgttctgtt ttaatccgga taggaagaat gtatttctta ttgtatctaa
     6001 tttataagac ggcaattgat acagaaggta gttctgttta tccaaactac cggctataaa
     6061 aaaaggaatt acaggatcaa ttcaacccgt aattcctttc aaaaaatgat tttctgaagc
     6121 tttacttcac cgcctccacc ctgaaccagt caacatcggc ataacccgag tcgttcagcg
     6181 gctgagggcg ctgacagaaa atacccactt ttgctcctac ccatttgcct tcccaggcag
     6241 tgaatggctt gccaaaggtc ataaactttt cgccatccag gctgtagctg aatgtacatg
     6301 tagctttggg ttcctgaatt ccttcgttat ttttctttgc ttttgtttgt ttcacttcca
     6361 cccggaaata aaccgtgttt ttacttacgg caaccgaatc attcaccatt tcgcgcgtac
     6421 ctttaggagc attcttacag gcagactggt tcagtacaag acccttatcg gtgctgttga
     6481 tggtcagggt ggcataatcc tgtccgaaaa caaccagccc tgcacgttcg ccggctttga
     6541 acggactgaa agtcagtttg gtagtggctt taaaatcggg ggcaggaaat ttctgcatca
     6601 acaaagccgg tgcgtcccac aggtttttgg cctcgccaat caggttccat gcaaacagac
     6661 gcaggtatcc cttgtcgccg gcagggaagc accaaagcgg attgtaatta gcctgccatt
     6721 gccattgaag tccgagggtt agcccatcga attcgtcact ttccactggt gttgcaatag
     6781 gatagctttt acctacagcc ggttttttat agacagagta cggattaccg caaccatcac
     6841 cgtctttatc ttcgccaatt acaggccagt cgttcaccca tttcataggt tgcagatgca
     6901 cagcacgacc gtaggcatat aaatcctgaa aatggaaaaa ccagtcttgt ttaccatcag
     6961 gcgtatctac ccatgcgccc tgatgaggcc cgttgatatc cgattttccc tgttccaaca
     7021 cgcgcttttc ttcgtacgga ccgtatacgt ttttagagcg taatgccaat tgccagcccg
     7081 gttttacacc tccggcagga caaagaatat agtaaaaacc gttacgttta taaaatttcg
     7141 gaccttcggt agttgtgttt accgggtgac catcaaatac cagacggtca gtaccgatag
     7201 ccttcgttcc atcggctgaa agttcaaaga cacccaacac gc
//
LOCUS       DATDNM010000757         2089 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_624843, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000757 DATDNM010000000
VERSION     DATDNM010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_624843"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1305
                     /locus_tag="VI413_12700"
     CDS             <1..1305
                     /locus_tag="VI413_12700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6915529.1"
                     /translation="QALLIVKNHIARFNNPTSITPGLNVRMNNYKMYSFSTGGTDFGG
                     SELVTHDALAKNGLLHTIKEQILYHNNVYEYILSTPNTTKLSAFVHSFEEKRFDESLS
                     IPIDIDGSGRTVYDSITTSYNRLFDDNLGSINTEDSTYTMLLPTDNAWDAAYAKYSPY
                     FKTYSTNQAYADSVRKVQTSLAILNDLIYKGAIDNSAAPDSITSTSGSVIHNPAAMFS
                     GSSKQIASNGLVYLADELKYNDVETWNKKIILECEAADGRVAGPNTGINTRTVTNNSA
                     VPVSDYRYIEVVPNTTTAQPSVTFDIPNVLSGKYNIYVEFIPGSLDGAPRDSTKLLFD
                     LTYLKATGTSINETVKLNTFITSGTQKVTIKAYSGFEFPVANYYDRLWWIDYKAGLHS
                     YNEHVVTTKLMVKTNVSTTELNNNTFTRRFRIDRIIFEPVSN"
     gene            1322..>2089
                     /locus_tag="VI413_12705"
     CDS             1322..>2089
                     /locus_tag="VI413_12705"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEY6915530.1"
                     /translation="MKKIQLDNEVGCKALISTKNIVFIVLLFLMTSVTSKAIGTDAPA
                     QNKQATPGYTIKGNVVDMSTKKGFAGVRISVANTQITTMTSADGTFEVKVPDTGVTFI
                     VDAPGYQNQVVALNGRDNITIKMLLQTKTPSFYDDTKFLSNSSASVTDFSQSIPTVNE
                     DISSALAGQVYGVNHSGTPGSSSAIFVRGLNSLNASAQPLYVVDGVVWQMSEDNNSIH
                     SGFYNDPLTLIDPNDVEKITVLKNGTSIYGAKGANGVI"
BASE COUNT          655 a          403 c          445 g          586 t
ORIGIN      
        1 caagcgcttt tgattgtaaa aaaccatatt gcccggttta ataatcctac atcgataact
       61 cccgggttaa atgtaaggat gaacaattac aagatgtatt cattctcaac cggtggaact
      121 gattttggtg gttctgagct ggtaacgcat gacgcgcttg caaaaaatgg attgttgcat
      181 actatcaagg aacaaattct atatcacaac aatgtgtatg aatatattct gtcaacgccc
      241 aatactacaa agttgtctgc ttttgtacac tcttttgaag aaaaacgatt cgatgaatca
      301 ttgagcattc caattgatat tgatggcagc ggacgcactg tttatgacag tattaccaca
      361 tcgtacaacc gtttgttcga cgataatctg gggagtatca acaccgaaga ttcaacgtac
      421 accatgcttc ttccaactga taatgcctgg gatgcagctt atgccaaata ctcaccgtat
      481 tttaaaacat acagcaccaa tcaggcttat gcagattcgg tacggaaagt tcaaacatcg
      541 ttggcaattc taaacgattt gatttacaaa ggtgcgattg ataactctgc cgcgcctgac
      601 tcaatcacct caacttcagg gagtgttatt cacaatccgg cagctatgtt tagcggaagc
      661 agcaagcaaa ttgcttcaaa tggattggtt tatctggctg acgagttgaa atataacgat
      721 gttgaaacgt ggaacaagaa aattattctt gaatgtgaag cagcggatgg acgtgttgcc
      781 ggacctaata cgggaatcaa tacccgtacc gtgacaaata acagcgctgt gccggttagc
      841 gattatcgtt atattgaagt ggtgccgaat acgactactg cccaaccttc tgttaccttc
      901 gatattccga atgttttatc aggtaaatat aatatttacg tggaatttat tccgggaagc
      961 ctcgatgggg cgccacgcga cagcacaaag ctgttgtttg acctgactta tttgaaagcc
     1021 acaggtacaa gtataaatga aacggtaaaa ctaaacacat tcattacgag cggaacccaa
     1081 aaagttacga taaaagctta tagcggattt gaatttcccg tagccaacta ttacgaccga
     1141 ctttggtgga ttgactataa agccggcttg catagttaca atgaacatgt tgtaaccaca
     1201 aagttaatgg ttaagactaa tgtttccacc acagagctga acaacaatac tttcactcgt
     1261 agatttcgga tagacagaat aatattcgaa cctgtaagta actaaaagaa gattgcatac
     1321 aatgaaaaaa atacaattag ataacgaagt tggctgtaaa gctctgattt caacaaaaaa
     1381 catagtgttt atcgtactat tgtttttgat gacaagtgta acatcaaaag ctattggaac
     1441 agatgctccg gctcaaaaca agcaggcaac tccgggttat accattaagg gtaatgtggt
     1501 tgatatgtcg acaaagaaag gatttgcggg agtaagaata agtgttgcaa atacccaaat
     1561 aactaccatg acaagcgctg atggaacttt cgaagtaaag gttcctgata ccggtgttac
     1621 gtttattgtg gatgccccgg gttaccagaa tcaggtagtg gcgctgaatg ggcgggataa
     1681 tatcactatc aaaatgctgc ttcagacgaa gactccatct ttttatgacg atactaagtt
     1741 cctatcgaat agttctgctt ctgtaacgga tttctctcaa agtattccta ccgtaaatga
     1801 ggatatctct tcggctttag ccggacaggt ttatggtgta aatcattcgg gaactcccgg
     1861 aagcagttct gccattttcg tgagagggtt gaattctttg aacgcttcgg ctcaaccctt
     1921 atatgtggtt gatggtgtgg tttggcaaat gtcggaggat aataactcca ttcattctgg
     1981 attttacaat gatccgctga cgctgattga cccgaatgat gtggaaaaaa taaccgtact
     2041 taaaaacgga acttccattt atggagcaaa aggagctaat ggagtgatt
//
LOCUS       DATDNM010000758         3409 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_90264, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000758 DATDNM010000000
VERSION     DATDNM010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3409
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90264"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3409)
                     /gene="sprA"
                     /locus_tag="VI413_12710"
     CDS             complement(<1..>3409)
                     /gene="sprA"
                     /locus_tag="VI413_12710"
                     /inference="COORDINATES: protein motif:HMM:TIGR04189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell surface protein SprA"
                     /protein_id="HEY6915531.1"
                     /translation="LDLVRGEWRNFNKPLYATDKIPTTNGKLDVQAVNIEENASKSPV
                     NYILPPGVTRETDPGQPALLQLNEQSMVMRVSDLSPGDARGVYKNTAYDMRQYKRLQM
                     FVHAEKMTDDVQNLKDYELTCFVRLGSDLVNNYYEYEIPLRLTPGGVLYNGENTADRQ
                     KVWMPENMFDFPFSTLTSIKLKRNREKQTTPGRVSNLIPYTDHDPEKLENRITIVGNP
                     SISDVQNIMIGIRNNGTSAKSGEIWVNEMRMSQFDESGGWAAMGNLAVGLSDLGTVNL
                     SGRVETSGYGSIESNVTNRRMDDLYQMNFSTSLDLGRFLPEQAKFQIPAYFSYTNETL
                     SPKYNPLDQDVLLSEALDNETNQQNRDTLLMVSQTVNTTKSFNVSGAKVNIKSKTPQF
                     YDPANVSFTYAYNETNQHSADIEKNLTKDERAAVVYGFSFNPEPVEPFKKVKAFDNPA
                     FKLIKEFNFYYLPSSLNFNTNMNRQFSQVKLRDLNTVASAGALPMDLTFSKDFMWNRQ
                     FDIKYDLSKAIKFSFQTAMNSNIAEPYYTPEIGKEYYEQWRDSVLSSIRKLGNPYTYQ
                     QVFTASWNLPINKIPLFDWITANASYNSTYNWNKMAQIKGNTTDLGNIATTMGAWQGD
                     VQLNFENFYNKSKYLKEVNRRFSSQMNNANKQKFQSKTYTQKVNLEKDKLLVINHRLG
                     SEKLRFSAVDKSGRPVSLNYKTKNATTIEITPSVSADSISLTIVSLDPNVQNVAKTTV
                     DFVARTLMMVRRGSVTYRQSNSMMLPGFLPKPGFIGQQDRGGITAPGYAFTFGIFDDN
                     TIENFDNKGWLYKNENIVNPATLAYTSDLDVKATVEPIPGFKVDLNAKRYEAKNTSIQ
                     FMFDGMPRTYNGSYNITLMALSTAFKPIASANQNYGSELFDKLLANRQVIASRLNSKY
                     AGTRYPNTGFFKNNTLGGTQYDSKNGLFDLNSADVLIPSFLAAYTGRDVNAVDTNPFL
                     SLLSILPNWRVSYDGLSNIGWVRDNFKSVSLTHAYTCRYSIGSYTSYSTWVAMDGNNG
                     FGYVNGGDDAKAIPSSPYSISDVSLSEQFSPLIGVNVAMKNSMTGKLEYRKQRNMVLN
                     LSSTQLIESTSDEFVIGAGYLLKDFDVILKLKSDQQSKIKNDLKISA"
BASE COUNT         1025 a          739 c          596 g         1049 t
ORIGIN      
        1 tcggcactga tcttcaaatc gtttttaatt ttagattgtt gatctgattt cagtttcagg
       61 atcacatcaa agtccttcag caaataacct gcaccgataa caaattcatc cgaagtggac
      121 tcaatcaatt gcgtgctcga aagattcaac accatgtttc gttgtttacg atactccagc
      181 ttaccggtca tactgttttt catggccaca ttaacaccaa tcagcggact gaattgttcg
      241 ctcagcgaaa catcggaaat actatatggc gacgatggta ttgctttcgc atcatctccg
      301 ccgtttacat acccaaaacc attgtttcca tccatagcaa cccaggttga gtaagaagta
      361 tacgacccaa tactgtaacg acaggtatat gcatgcgtca aactcactga tttaaaatta
      421 tctctcaccc agccaatatt cgacaatcca tcgtaactta cacgccagtt tggcaaaata
      481 ctcagcaatg acaaaaacgg atttgtatca accgcgttga catcccgacc agtataagca
      541 gccaggaatg aaggaatcaa aacatcggcc gagtttaaat caaataatcc attttttgaa
      601 tcatattgcg tgccacccag agtattattt ttaaagaaac ctgtattagg ataacgtgta
      661 ccagcatact ttgagtttaa ccttgaggca atcacctggc ggtttgcaag caatttatca
      721 aacaattcgg aaccatagtt ttggttagct gaagcaatcg gtttgaaagc cgttgacaaa
      781 gccatcaaag taatattata acttccgttg taagttctcg gcattccatc aaacataaac
      841 tgaatactgg tattttttgc ttcgtaccgt ttggcattca aatcaacctt aaatccggga
      901 attggttcaa cagtagcttt tacatccaaa tcggaagtat aagccaaggt agccggattt
      961 acaatattct catttttata caaccatcct ttattatcaa aattttcaat tgtattatca
     1021 tcgaaaatac caaaagtaaa cgcgtagccg ggagcagtaa ttcctccccg atcctgctgt
     1081 ccgataaatc cgggttttgg caaaaatcct ggcaacatca tactgttcga ctggcggtaa
     1141 gtgacagaac cacgacgcac catcatcaac gtgcgggcta caaaatcaac agttgttttt
     1201 gcaacatttt gcacattcgg atccagactg actattgtca acgaaatact atcggcacta
     1261 actgacggag taatttctat agtcgttgca ttcttagttt tataatttag tgaaacaggc
     1321 ctgcctgatt tatccactgc agaaaatctt agtttttcac ttcccaaccg atgattaatt
     1381 acaagtagtt tatccttttc aagattcact ttttgagtgt atgtcttcga ttggaacttc
     1441 tgtttattag cattattcat ctgagacgaa aaccttctgt ttacttcttt cagatattta
     1501 gacttattgt aaaagttctc gaaattcaac tggacatcac cttgccatgc acccattgta
     1561 gtggcgatat tccccaaatc agttgtattt cctttgatct gagccatttt gttccagtta
     1621 taagtagaat tataagaagc attggcagta atccagtcaa acaaaggaat tttattaatc
     1681 ggcaaattcc acgaagcagt gaaaacctgt tgataagtat atggatttcc cagtttacgg
     1741 atacttgaca aaacagaatc gcgccattgc tcgtaatact cttttccaat ttctggtgta
     1801 taataaggtt cagcaatatt agaattcatt gctgtttgga agctaaactt aatagctttt
     1861 gacaaatcat atttaatatc aaactgcctg ttccacataa aatccttgct gaaagtcaaa
     1921 tccattggca acgccccggc agatgccaca gtgtttaaat cgcgtagttt aacctgcgag
     1981 aactgacggt tcatattcgt attgaaattc aacgatgaag gtaaatagta aaaattaaat
     2041 tctttaatca gtttaaatgc aggattgtcg aatgctttta ctttcttgaa tggctcaaca
     2101 ggctccggat tgaaagagaa gccataaaca actgcagcac gctcatcctt cgtcaggttc
     2161 ttttcaatgt ctgcgctatg ttggttcgtt tcattgtacg cataggtgaa cgagacattt
     2221 gcaggatcgt aaaattgcgg agttttactc tttatattga cttttgcacc ggaaacatta
     2281 aagctttttg ttgtattcac tgtctgcgaa accatcaata atgtatcacg attctgctga
     2341 ttagtttcat tatcaagcgc ttcagataaa agcacatcct gatcgagcgg attatatttt
     2401 ggagacaaag tctcgttggt ataagaaaaa taagccggaa tctgaaattt agcttgttcg
     2461 ggcaagaaac ggcccaaatc cagtgacgtt gagaaattca tttgatacag gtcatccatc
     2521 cggcggttag ttacattact ttcaatgctt ccataccctg aagtttcaac acgacctgat
     2581 aaatttacgg ttcccaaatc tgataaccca acggccaaat ttcccattgc agcccatccc
     2641 cccgattcat caaattgaga catacgcatt tcattcaccc atatttcacc agatttagct
     2701 gaagttccgt tatttcggat accaatcata atgttctgaa catctgaaat tgatggatta
     2761 ccaactattg taatcctatt ttcaagtttt tcaggatcat ggtctgtata tggaatcaaa
     2821 ttcgacaccc gacctggagt ggtttgcttt tctctgtttc ttttcaactt aatacttgta
     2881 agagttgaga aggggaagtc aaacatattt tcaggcatcc acaccttttg acggtcagca
     2941 gtattttctc cattatacag cacgccacca ggagtgagac gaagtggaat ttcatattcg
     3001 taataattat ttaccaaatc cgaacccaaa cgaacgaaac aagtcaattc ataatctttc
     3061 aggttctgaa catcatcagt cattttttcg gcatgaacaa acatttgcaa acgtttatac
     3121 tgacgcatgt cataagcggt atttttataa acaccacgtg catcacccgg cgacaaatcg
     3181 cttacccgca taaccatcga ctgctcgttg agttgtaaaa gcgcaggttg acccggatct
     3241 gtttcacgcg ttacacccgg aggtaaaata taattaaccg gcgatttact tgcattttct
     3301 tcaatgttca cagcttgaac atctagtttt ccattcgttg tcggaatttt atctgtcgca
     3361 tacaacggct tgttgaaatt acgccactcg ccacgcacca aatcaagag
//
LOCUS       DATDNM010000759         2726 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1585627, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000759 DATDNM010000000
VERSION     DATDNM010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2726
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1585627"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1415)
                     /locus_tag="VI413_12715"
     CDS             complement(<1..1415)
                     /locus_tag="VI413_12715"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6915532.1"
                     /translation="MKKTYILFAIISTLALNSCDSYLDIVPDKAQEIELMIERKEAAY
                     RALATCYHYLPQEDGVYSTTAFASDELTTPIAKETPGVELMRGKQSVDNPIMGLWHDT
                     YPYGRMQESLFKAIRACNIFIENIDMVKDMKTDEKATWKSEAIFLKAYYHFLLFRQYG
                     PVPIVDVNLPITAGVEEVRIKRRPVDEVVDYIVSTIDKSIPNLQTRITSSNDFGRIDK
                     LIAYSIKSRVLLYAASPLFNGNASFYDTFKDKDGVKLFNTTYDKEKWKKALDAAEYAL
                     QLATANNVKLYEFNGIVPTFDTLDIKQSEVQALYNYRYMFTERWNSELIWGNSNPVNN
                     GQWWTLQAASMMINPDASAQAAAWQWVSPTIQAAEAYYTKNGLPIDEDLTFKYANRYS
                     LARVTDADKYHAMTGSTIMIPNLHLGREPRFYASIGFDKGIYRTWGQKWNLLMKKGEA
                     YGRRGNTNDYVITGYVLKKVC"
     gene            complement(1438..>2726)
                     /locus_tag="VI413_12720"
     CDS             complement(1438..>2726)
                     /locus_tag="VI413_12720"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6915533.1"
                     /translation="NGSEKFSKQNRYGFFPSAGLGWVVTNEKFFSESLKKTISNLKFK
                     ATYGLVGNDAISSNRFYYLSSVNLNDAGKGHVWGEDFGNGYNGYNINNYANPDVTWEI
                     AEKANFGLELGLFGDANIQLDYFTENRTNIYMWRDYIPATMGLTAPIASNIGKAESHG
                     IDGSVDYKVSVNRDLWITSRVNFTYATNKIIENGEPQYPYAYMSNIGQPMNQPRGLVA
                     ERLFIDNLDVLNSPVQYNQLGSYMAGDIKYVDINEDGKIDDSDMVPIGFPTVPEIIYG
                     FGASVGYKDIDFSFFFQGSGRSSFFIDPTSISPFVNERNALQIIADNHWSDENPNPNA
                     FWPRMSVNSVSNNEKASTWWLRDGSFLRLKSVELGYSLPAKFLKKINIEKVRFYASGT
                     NMLVFSKFKLWDPEMGGRGLGYPPQKIINIGLNLNF"
BASE COUNT          806 a          572 c          501 g          847 t
ORIGIN      
        1 tgacacactt ttttcagcac atacccggtt atcacatagt catttgtatt gccacgacga
       61 ccataggctt cgcctttttt catcaaaaga ttccattttt gtccccaggt acgataaata
      121 cctttatcga aaccaattga agcatagaag cggggttcac gacctaaatg cagatttgga
      181 atcataattg tacttccggt catagcatgg tatttatctg catcagttac gcgagcaagg
      241 ctatagcgat ttgcgtattt aaaggttagg tcttcatcga taggcagacc gttcttggta
      301 taataagcct cagccgcctg aatagttggc gaaacccatt gccatgcagc agcttgtgct
      361 gatgcatcag gatttatcat catggatgca gcctgcaaag tccaccactg accattattc
      421 accggattgg agtttcccca tataagttca gagttccacc gttcggtaaa catataccta
      481 taattataaa gtgcctgtac ttcggactgt tttatgtcca gcgtatcaaa agttggtaca
      541 atgccgttaa actcatataa tttaacattg ttagcagtgg ctagttgcag tgcatactct
      601 gctgcatcga gggctttttt ccatttttct ttgtcataag tggtattgaa taattttaca
      661 ccatctttat ccttaaaagt atcgtagaaa gaggcattgc cattaaacag cggacttgca
      721 gcatacaata acacacgtga tttgattgaa taagcaatga gtttatcgat gcgtccaaaa
      781 tcgtttgacg acgtaattcg tgtttgcaag ttgggaattg atttgtcgat agtagacaca
      841 atataatcaa cgacttcatc aacaggacgt cttttgattc ggacttcttc gactccggcc
      901 gtgatgggta gattaacatc tacaattgga acaggaccat attgacggaa cagtaaaaaa
      961 tgataatacg ctttcaggaa aatagcttcc gatttccagg ttgctttttc atcggttttc
     1021 atatctttta ccatatcaat gttttcgata aaaatattac aagctctgat ggccttgaat
     1081 aatgattcct gcatacgacc gtaaggataa gtatcgtgcc acaaacccat aatcggattg
     1141 tcgaccgact gtttgccacg catcaattcc acacccggtg tttctttggc aataggtgta
     1201 gttaactcgt ccgaagcaaa agctgttgtt gagtatacgc catcttcctg tggcaaataa
     1261 tgatagcaag tggctaaagc acggtaagca gcctcttttc gctcaatcat tagttcaatt
     1321 tcctgcgctt tatctggtac aatgtccaga taactatcac aactgttcaa tgccagtgta
     1381 gagataattg cgaatagaat atatgttttt ttcatgttga atattttcat tttagaatta
     1441 gaaatttaaa tttaaaccaa tattgataat tttctgtgga ggataaccta atcctcttcc
     1501 acccatttcg ggatcccata gtttaaattt actgaataca agcatgttgg ttcccgatgc
     1561 ataaaatctg accttttcaa tatttatttt tttcaagaac ttcgctggta atgaataccc
     1621 cagttcaacg cttttgaggc gaaggaaact gccatcgcgc aaccaccagg tcgacgcttt
     1681 ttcgttattt gacactgaat taactgacat acgtggccaa aaagcattcg gattcggatt
     1741 ttcatcggac caatgattgt ctgcaataat ttgcaaagcg ttacgctcgt taacaaaagg
     1801 agaaatggaa gttgggtcaa taaaaaaaga cgaacgacct gaaccctgaa aaaagaatga
     1861 aaagtcgata tctttgtagc ctactgaggc cccaaatcca tagataattt caggtactgt
     1921 tggaaatccg attgggacca tatccgagtc atcaattttt ccatcttcgt taatgtctac
     1981 atatttgata tcaccagcca tataactgcc taactgatta tattgaacag gcgaattaag
     2041 cacatccaaa ttatcaataa acaatctttc ggccaccaaa ccacggggtt gattcatcgg
     2101 ttgaccaata ttgctcatgt aagcatatgg atattgaggc tcaccattct caataatttt
     2161 attagtggca taggtgaaat ttacgcgtga tgtaatccat aaatctctat tcacgcttac
     2221 tttataatca accgacccat caatcccatg cgattcagct ttacctatat tactggcaat
     2281 aggcgcagtg agtcccattg ttgccggaat ataatcgcgc cacatataga tattggttct
     2341 gttttcagta aaataatcaa gctgaatatt ggcatctcca aacaatccaa gctctaaccc
     2401 aaaatttgct ttctcggcaa tttcccaggt aacatcgggg ttggcgtaat tatttatatt
     2461 atagccattg tagccatttc caaaatcttc gccccaaaca tgtcctttgc cggcatcgtt
     2521 gaggtttact gatgaaaggt agtaaaagcg attgcttgaa atagcatcgt tgcctaccaa
     2581 cccataagtc gccttaaatt tcagattcga aattgttttt ttcaaacttt cagagaaaaa
     2641 cttttcgttg gttaccaccc agcctaagcc tgccgatggg aaaaacccat agcggttttg
     2701 tttcgaaaat ttttcagatc cattat
//
LOCUS       DATDNM010000760         2868 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1586047, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000760 DATDNM010000000
VERSION     DATDNM010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1586047"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..440
                     /locus_tag="VI413_12725"
     CDS             <1..440
                     /locus_tag="VI413_12725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl transferase family 1"
                     /protein_id="HEY6915534.1"
                     /translation="VGNVEPVVLQDLENLHLTQYVDKVGYMPHADAIAFQQTSPVLLL
                     LINNTPNANGILTGKFYEYMASERPILVIGPLKSDVATLLEETQAGMISDFNDLNGTK
                     HVINKLFTEYKAESLKSKSKNYQQFSRKNQCSIMAGLLDEIIK"
     gene            447..1565
                     /gene="wecB"
                     /locus_tag="VI413_12730"
     CDS             447..1565
                     /gene="wecB"
                     /locus_tag="VI413_12730"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEY6915535.1"
                     /translation="MKKIILVVGARPNFMKIAPIMHVLQKNTVLQPVLVHTGQHYDTQ
                     MSGRFFEELNIPAPDINLEVGSASHAEQTARIMIGFEKVCLEEKPDYVFVVGDVNSTA
                     ACTLVAAKLNIKTIHYEAGLRSNDRTMPEEINRLVTDSISDFFFTTSIDADENLKKEG
                     IPADKIFMVGNLMIDTLIANLKKTEGIEMQPKLLTSDSTINIAELKKSGYGVMTFHRP
                     SNVDEKESLEKLAEIWAEISEKIPLVFPIHPRTLRNLDQFGLLDKLKTYKNLFLIEPL
                     GYLDFIKLVSDSKFALTDSGGIQEETTYMNIPCLTVRPNTERPVTVWEGSNKLIKIHE
                     IRDEVNLILQGEGKKGHTPQFWDGKTAERIVSIISKIE"
     gene            1599..2420
                     /locus_tag="VI413_12735"
     CDS             1599..2420
                     /locus_tag="VI413_12735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005864093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF268 domain-containing protein"
                     /protein_id="HEY6915536.1"
                     /translation="MSIKSFLQEAKSSINKYAYLHWGIRIFTGTISSSYYKNLKKNLE
                     ELNNQAQNSSIKFPVSGLYPCYEDKKDAAGKLMMHYFFQDIYVAQQIHKNNPLRHIDI
                     GSRVDGFVAHVATFREIEVFDIRPLNISVPNIKFTQADLMNLNEKDIASTDSVSCLHA
                     LEHFGLGRYGDPIKYDGYLDGFRNITALLKKEGKLYFSVPMGVQRIEFHAHRVFSLNY
                     LLQIVSEHFTIDNFSYINDNNEFFPKVDLSTVSVKDKDESFGCKFGCGIFVLTKK"
     gene            2428..>2868
                     /locus_tag="VI413_12740"
     CDS             2428..>2868
                     /locus_tag="VI413_12740"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6915537.1"
                     /translation="MVISVVSVVWNAKDSIHKTIESVLSQTGSEIEYIVVDGQSTDGT
                     IEVLKKYENRLARLIIEKDKGLYDAMNKALDVATGDFLIFMNSGDTFHSSQTIENAVE
                     LLNDNNSVFYGNVIQVNPETMNERIFGGKFSKYRFCFKNICHQSI"
BASE COUNT          969 a          501 c          563 g          835 t
ORIGIN      
        1 ttgttggaaa tgtggaacca gtcgttctac aggatctgga gaatctgcat ctcacacaat
       61 atgtcgacaa agttggttat atgcctcatg ccgatgccat agcttttcag caaacttcac
      121 ctgttttgtt attgctaatt aacaacaccc caaatgcaaa tggaatcctg acaggaaaat
      181 tttatgaata catggcctcc gaacgtccaa ttctcgttat cggccctttg aaaagcgatg
      241 tagccacatt attggaggaa actcaagccg gcatgatttc cgatttcaac gacttgaatg
      301 gcacaaaaca cgttatcaat aaactattta cagaatataa ggccgaaagc ctgaaatcga
      361 aatctaaaaa ctaccagcaa ttttcacgaa aaaaccaatg cagtataatg gctgggctac
      421 ttgatgagat tataaaataa agaaaaatga aaaaaattat tttagtcgtt ggggcacgcc
      481 cgaatttcat gaaaattgca cccataatgc atgtgcttca gaaaaacact gttttacagc
      541 cagttttagt tcacaccggc cagcattacg atacgcaaat gtcgggcaga ttttttgaag
      601 agcttaatat tccggcaccg gatattaatc tcgaggtagg ttctgcttct catgctgaac
      661 aaaccgcccg catcatgatc ggttttgaga aggtatgtct ggaagaaaaa cccgattatg
      721 tatttgtggt aggagatgtc aacagtacag ccgcatgtac tctggtggca gcaaaactca
      781 atataaaaac aatccattat gaagccgggc tgcgaagtaa tgaccgcact atgcctgaag
      841 aaatcaacag gttagttacc gactctatta gcgatttttt tttcacaaca agtattgatg
      901 ccgatgagaa tttaaagaaa gaaggaattc ctgctgacaa gatttttatg gttggaaatc
      961 tgatgattga caccctgatt gccaatctca aaaaaacgga aggaattgaa atgcagccca
     1021 aactgcttac ttcggacagc acgattaata ttgcggagct taaaaaatcc ggatatggcg
     1081 ttatgacttt tcacagaccg tcaaatgtag atgaaaaaga gagtttggaa aagctggctg
     1141 aaatctgggc tgaaatatca gagaaaattc cgcttgtatt tcctattcat ccccgtacac
     1201 ttcggaacct cgatcagttt gggttgttag acaaactgaa aacatataaa aatctatttc
     1261 tgatagaacc acttggttat ctggatttta taaaattagt gagcgactcg aaatttgcac
     1321 tcacagactc aggaggcatc caggaagaaa caacctacat gaacatcccc tgcctcactg
     1381 tccgcccgaa taccgaacgt ccggtaacag tatgggaagg aagtaataag ctgataaaaa
     1441 ttcatgaaat cagggatgaa gtgaacttaa ttttacaagg cgaagggaaa aaaggacaca
     1501 ctccccaatt ttgggatggg aaaacggcgg aacgaattgt atctattatt tcgaaaattg
     1561 aataaaacta gagagaatta atatttaagc aacacataat gtctattaaa tcatttctgc
     1621 aagaggcaaa gtcctcgatc aataaatatg catatttaca ttgggggatt cgtatattta
     1681 ccggaacaat atcatcttca tattataaaa atctgaaaaa gaatctggaa gagctgaata
     1741 atcaagcaca aaattccagc ataaaatttc cagtttccgg cttatatcca tgttatgaag
     1801 ataaaaaaga cgctgctggg aaattaatga tgcattattt ttttcaggat atttatgttg
     1861 ctcaacaaat tcacaagaat aatccactcc gacatattga tattggaagt cgcgtggatg
     1921 gatttgttgc acatgtagca accttccgcg aaatagaagt ttttgatata cgtccgttaa
     1981 atatatcagt tcctaatatc aaatttactc aagctgattt aatgaatctg aatgagaaag
     2041 atatagcctc aaccgattca gtttcgtgtc ttcatgcgtt agaacatttt ggattaggtc
     2101 gttatggtga tccgatcaag tatgacggtt atttagatgg cttcagaaac attactgctt
     2161 tactaaaaaa agagggtaaa ctttattttt cagtgcccat gggagttcag cgaattgagt
     2221 ttcatgctca cagggtcttt tctctaaatt acttactcca aattgttagt gaacatttta
     2281 cgattgataa tttttcgtac attaacgaca ataacgaatt tttccctaaa gttgatttgt
     2341 caacagtttc ggtcaaagac aaagatgaaa gcttcggttg taagtttgga tgcggtattt
     2401 ttgtattgac aaaaaagtaa tttaataatg gttatttcag ttgtatcggt agtttggaat
     2461 gcaaaggaca gtattcacaa aacaattgag tcggtattaa gtcagactgg ctctgagatt
     2521 gaatacattg tggtagatgg acaaagtact gatggcacaa ttgaagttct taaaaaatac
     2581 gaaaatagat tagcccggtt gataattgaa aaggataagg gcttatatga tgcaatgaat
     2641 aaagcactgg atgttgctac cggtgatttt ctgattttta tgaattcagg tgatactttt
     2701 catagttcac aaactattga aaacgcagtt gaactactga atgacaacaa ttcagtattt
     2761 tatggcaatg tcattcaggt taatccggaa acaatgaacg aacggatttt tggaggcaaa
     2821 tttagtaaat accgattttg cttcaagaat atctgtcatc aatcaatt
//
LOCUS       DATDNM010000761         3059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1799618, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000761 DATDNM010000000
VERSION     DATDNM010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3059
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1799618"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /gene="hisG"
                     /locus_tag="VI413_12745"
     CDS             complement(<1..564)
                     /gene="hisG"
                     /locus_tag="VI413_12745"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005789131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEY6915538.1"
                     /translation="MLRIAVQAKGRLYEETMLLLTESGIKLESGKRLLLLPARNFPLE
                     VLFLRDDDIPQSVADGVADIGIVGENEYAEKKKNAVIIKRLGFSKCRLSLAIPKEIDY
                     KDISWFNGKVIATSYPEILGDFLKDKNVTADIHVITGSVEIAPNIGLADAIFDIVSSG
                     STLVTNHLKEVEVLMKSEALLIANPSLS"
     gene            complement(697..861)
                     /locus_tag="VI413_12750"
     CDS             complement(697..861)
                     /locus_tag="VI413_12750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009437385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915539.1"
                     /translation="MKKVFLFFVVAMAFASCAPKAAETAPAADSTVVAVDSAAVDTTA
                     VDTTAVDSVK"
     gene            complement(1125..1289)
                     /locus_tag="VI413_12755"
     CDS             complement(1125..1289)
                     /locus_tag="VI413_12755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013617035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915540.1"
                     /translation="MKKVFLFCVVALAFASCAPKAAETAPAADSTVVAVDTVAVDSAA
                     VDTAAVDSVK"
     gene            complement(1455..>3059)
                     /locus_tag="VI413_12760"
     CDS             complement(1455..>3059)
                     /locus_tag="VI413_12760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6915541.1"
                     /translation="DVAKRVARIHILFEQCKLKPNDKVALIGRNNANWAITYLATVTY
                     GAVIVPILQDFNPNDVHHITNHSESTLLFVGDNIWENLEEENLTTVKAVFSLTGFNCI
                     TLLNKEPKPELHEAEVHEQLVKKYLQPDYINSLFHAKYPHGFFRDHVRYIDKPNTEIV
                     SINYTSGTTGFSKGVLTSGNALAGNITFGLRTGLVAQQYRIISFLPLAHAYGCAFEFL
                     TSTCAGCHIHFIGKIPSPKILLTAFAEIKPNVVFLVPLIVEKIYKKQIQPLLARPSMR
                     WVLSIPFLDQTVLSQVRKKLIDAFGGEFSQIVVGGAPLNAEVEEFFAKIKFPYTVGYG
                     MTECAPLISYADYRDFVPKSAGKLLDIMEAKLLQQDIESGVGEICVRGENIMSGYFKN
                     PEATAQIIDKEGWLHTGDLGTIDADGNVFIRGRNKTMILSASGQNIYPEEIEAKLNNM
                     PFVMESLVIESSGKLLALVCPDYEAVDAEGIDQNQLEETMEENRKLLNSMVASYEGVS
                     KIQLYPYEFEKTPKKSIKRYLYSTNK"
BASE COUNT          967 a          632 c          501 g          959 t
ORIGIN      
        1 agacaatgaa gggtttgcta ttaacaaagc ctcagacttc attaagactt ccacttcttt
       61 caaatgattt gtaaccaaag tgctaccaga gcttacaata tcaaaaatag catcggcaag
      121 cccgatattc ggagcaattt cgaccgaacc tgttattaca tgaatatctg cagtgacatt
      181 tttatctttc agaaaatccc caagaatctc aggatatgaa gttgcaatta cctttccgtt
      241 aaaccacgat atatctttat aatcaatttc tttggggatt gccaatgaca aacggcattt
      301 gctaaaccct aatcgtttaa tgattacagc atttttcttt ttctcagcat attcattttc
      361 accaactata ccaatatcgg caacaccgtc ggctacagat tgtggaatat catcatcgcg
      421 aagaaacaaa acttccaatg gaaaattacg ggcaggtaaa agtaacaatc gtttacctga
      481 ttcgagcttt atacctgatt cggtaagcaa caacatagtt tcttcgtata accttccctt
      541 ggcttgtaca gcaattcgta acatagtttt tcttgttttt attaattggt ccacaaaggt
      601 acaaaaaatg ctcggaatag gcataaaaaa agtccgttat cgaaataacg gacttaaatg
      661 cttgcaagaa tttctttttg cgatagcttt ttttgattac tttactgaat caacagcagt
      721 agtgtctaca gcagttgtgt caacagcagc agaatcaaca gcaacaactg tagaatcagc
      781 agcaggagca gtttcagctg ctttaggagc gcaagatgcg aaagccatag ctaccacaaa
      841 aaataaaaat acttttttca tttcttttaa actttaaaaa tttaacatgt ttgttttgca
      901 attcaaaatc gatgcaaagg tacatcattt ttttattctg cattaataaa tatcattttt
      961 ttttaaaata ttttttggtt tgactgtttt ttatgaaaaa atgagcaaaa agaatatcga
     1021 aaaaccgact tatctttatt tctaagcatt accaaaatta aaaaagtcca ttagaaaata
     1081 attctaacgg actttttgct tcgtaaaatt tacgttagct tcgattactt tactgaatca
     1141 acagcagcag tatcaacagc agcgctatct acagcaacag tatcaacagc aacaactgta
     1201 gaatcagcag caggagcagt ttcagctgct ttaggagcgc aagatgcgaa agccaaagct
     1261 acaacgcaaa acaaaaatac ttttttcatt tcttttaacc tttaaaattt aacatgttaa
     1321 ttttgctatt caaaatcgct gcaaagatac atcaaatttt tattatgcat taataatcct
     1381 gctctttttt ttaattattt tcaattgaaa tttatttgca gaatatacta ttgattaaaa
     1441 gcacattaca tttgttattt atttgtagaa tacaaatacc gtttaatact ttttttaggt
     1501 gttttctcaa attcgtaagg ataaagttga atttttgaca caccttcata agaagcaacc
     1561 atcgaattaa gcaattttcg gttttcttcc attgtttctt ccaactgatt ttgatcaatt
     1621 ccctctgcat ccaccgcctc atagtccggg caaaccaagg ccagtaactt accgctgctc
     1681 tcaattacca ggctttccat tacaaaaggc atattattta atttagcttc aatctcctcc
     1741 ggatatatat tttgcccact ggcactcaat atcatggttt tattacgtcc acggataaaa
     1801 acatttccat cggcatcaat tgttccgaga tctcctgtgt gcaaccagcc ttctttatcg
     1861 ataatctggg cagtagcttc cggattctta aagtatcctg acataatgtt ttcaccacga
     1921 acacaaatct cccccacccc gctttcaata tcttgttgca aaagtttcgc ttccattata
     1981 tccagcagtt ttcctgccga tttgggaaca aaatccctat aatcggcata actgataagc
     2041 ggagcacatt cagtcattcc atatccaact gtgtatggaa atttaatttt ggcaaaaaac
     2101 tcttccactt cggcattcaa tggagctcca ccaacaacaa tctgcgaaaa ttcacctcca
     2161 aaagcatcga tcagcttttt gcgaacctgc gacaaaacag tctggtccaa aaacggaata
     2221 ctcaacaccc aacgcatcga aggtcgggcc aataagggtt gaatctgctt tttatagatt
     2281 ttctccacaa tgagcggaac caaaaacact acatttggct ttatttcggc aaatgcagtt
     2341 aagagtattt tgggagatgg aattttacca ataaagtgaa tatgacaccc ggcacaggtt
     2401 gacgtaagga actcaaatgc acacccataa gcatgagcaa gaggcagaaa tgagattatt
     2461 ctgtattgct gtgccaccag tccggtacgg agtccgaaag taatattgcc ggccaacgca
     2521 tttccgcttg tcagaacacc tttactgaaa ccggtcgttc ccgatgtata gtttatagat
     2581 acgatttcag tattcggttt atcaatatac cgaacgtggt cgcggaaaaa accatgtgga
     2641 tatttggcat gaaacaagct attaatataa tctggttgca ggtatttttt caccaactgt
     2701 tcatgcacct cagcttcatg caattcaggt tttggctctt tgtttagcag cgtaatacaa
     2761 ttgaaaccgg taagtgaaaa cactgctttg acagttgtaa gattttcttc ctcgaggttt
     2821 tcccaaatat tgtcacccac gaaaagtaat gttgactccg agtgattagt gatatgatga
     2881 acatcgttgg ggttgaaatc ctgcaaaata ggaactataa ccgcaccata ggtaacagta
     2941 gccaggtaag ttatcgccca gttagcatta ttcctgccaa ttaaagccac tttatcgttg
     3001 ggtttcagtt tgcattgctc gaataatata tgaatccggg ctactctttt ggctacatc
//
LOCUS       DATDNM010000762         3261 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_518527, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000762 DATDNM010000000
VERSION     DATDNM010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3261
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518527"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VI413_12765"
     CDS             <1..233
                     /locus_tag="VI413_12765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEY6915542.1"
                     /translation="AWVELQFSGQAEAVVLKVYETEKEFEKHNLAVGTIVTDEKKFAK
                     IALKDGFIALKSVQAPGKKRMEIGEFLRGMRF"
     gene            complement(327..704)
                     /locus_tag="VI413_12770"
     CDS             complement(327..704)
                     /locus_tag="VI413_12770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007558396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY6915543.1"
                     /translation="MKKIINTPNAPAAIGPYSQAVEANGTLYVSGQIPINPTVGKIEA
                     TDITGQTEQVFINIKAVLDEAGYSFADVVKSTVFIADIAEFAAMNEVYKKYYQTECPA
                     RSAFAVKSLPLGALVEIETIAVK"
     gene            889..>3261
                     /locus_tag="VI413_12775"
     CDS             889..>3261
                     /locus_tag="VI413_12775"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009017033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEY6915544.1"
                     /translation="MELASKYNPTDIESKWYQYWLENGFFSSKPDGREPYTIVIPPPN
                     VTGVLHMGHMLNNTIQDILVRRARMLGKNACWVPGTDHASIATEAKVVGKLAAEGVKK
                     TDLTREKFLGHAWDWTHKHGGIILEQLKKLGASCDWNRTAFTMDEPRSESVLKVFADL
                     YEKGLIYRGVRMVNWDPKALTALSDEEVIFKEQQGKLFYLRYKIEGEDGYAVVATTRP
                     ETIMGDTAMCINPNDPKNAHLKGKKVIVPLINRSIPVIEDEYVDVEFGTGCLKVTPAH
                     DVNDYMLGEKYNLPSIDIFNDNGTLNENGAQYAGMDRFDVRKQIEKDLEAAGLLEKTE
                     PYTNKVGCSERTDAVIEPKLSMQWFLKMEQLAKPALEAVMSDDIQLYPPKFKNTYRHW
                     MENVKDWCISRQLWWGHRIPAYFLPHGGFVVALTKEEAYQKALAIVNYSLSIEDLRQD
                     EDCLDTWFSSWLWPISVFDGINNPENEEINYYYPTNDLVTAPEILFFWVARMIIAGYE
                     YKGEMPFKNVYLTGIVRDKLGRKMSKSLGNSPDPLDLIAHFGADAVRLGMLLTSPAGN
                     DLPYDDSLCEQGRNFNNKIWNAFRLVKGWEVADIEQPESARMAVKWFDAQLNKTLLEI
                     EDLFDKYRLSEALMAVYKLFWDEFSSWYLEMAKPAYQKPIDRTTYNATLGFFDSLLKV
                     LHPFMPFITEELWQALEDRKEGESIMVELQPKATTADETLIGNFEYAKEIIAGIRTIR
                     LQKNIPNKESLSLEVVGSHNADFDAVIAKLGNLETIENVTEKAAGSISFLV"
BASE COUNT         1003 a          651 c          723 g          884 t
ORIGIN      
        1 cagcctgggt ggaacttcag ttttctggac aagccgaagc tgttgtgttg aaagtttatg
       61 aaacagaaaa agaatttgaa aagcacaact tagcggtggg tacaattgta accgacgaaa
      121 agaaatttgc aaaaatagct ctgaaagatg gatttattgc actgaaatct gtacaagctc
      181 cgggaaaaaa gcgaatggag atcggagaat ttctgagagg aatgagattc taatttcttg
      241 atgtgataat gtgatgatga ggtaattctg attgcactcg atcttattat cacatcatca
      301 cattatctaa tcaatacatc aagaaatcat tttaccgcaa tagtttcaat ttccaccaaa
      361 gctccaagtg gcaacgactt cacagcaaaa gccgagcgag ccggacattc cgtctggtaa
      421 tatttcttat acacctcgtt catagccgca aactcagcta tatcagcaat aaaaacggtt
      481 gatttcacta catcggcaaa actgtaaccg gcttcgtcca aaacggcttt aatgttaata
      541 aaaacctgct cggtctgacc ggtaatgtca gtagcttcaa tttttcctac agtcggatta
      601 ataggaattt gccctgagac atataaagtt ccgttggctt caacagcctg actatatggg
      661 cctattgcag caggtgcatt gggagtattt attatttttt tcattgataa atggattaaa
      721 tattgacttc acaaagatag aaaattttat tttccagaac agtcaaattt atttatcttt
      781 gcactcttga aattttcaga gtaacaaaat ttcattgcat tgaaaaagaa ttaattgcat
      841 cactcaacgc aattgcaaat cgtcaattca ttaatcgaaa acataaaaat ggaactcgca
      901 agtaagtaca atcccactga catcgaatcg aaatggtatc aatactggtt agaaaatggc
      961 tttttcagct caaaaccgga tggtcgtgag ccttacacca tcgtcattcc tccgccaaat
     1021 gtaaccggtg tgttgcacat ggggcacatg ctcaacaata ccattcagga cattctcgtt
     1081 cgtcgtgccc gcatgttggg aaaaaatgct tgttgggttc cgggaaccga ccatgcttcc
     1141 atagctacag aagctaaagt agttggaaaa cttgctgccg aaggtgtcaa aaaaacggat
     1201 ctgacccgcg aaaaatttct cggccacgcc tgggactgga cacataaaca cggtggaatt
     1261 atcctcgaac agttgaaaaa acttggcgct tcgtgcgatt ggaatcgtac agccttcacc
     1321 atggatgaac cacgttcgga aagtgtatta aaagtatttg ccgacttata cgaaaaaggc
     1381 ctgatttacc gcggagttcg tatggtaaac tgggatccga aagcattgac ggctttgtct
     1441 gacgaagaag taatttttaa agaacaacaa ggtaaattgt tttacctgcg ttataaaatc
     1501 gaaggagaag atggttatgc ggttgtagcg actactcgtc cggaaaccat tatgggcgat
     1561 acggctatgt gtatcaaccc gaacgatccg aaaaatgccc atttgaaagg gaaaaaagta
     1621 atcgttccgt tgatcaaccg ttctattccg gttattgaag acgaatacgt agatgttgaa
     1681 ttcggaaccg gttgtttgaa agtcactccg gcgcacgatg taaacgacta tatgctgggc
     1741 gaaaaataca atttgccttc aatcgatatt tttaatgata acggaacgtt gaatgagaat
     1801 ggcgcacaat acgccggcat ggatcgtttt gatgtccgca agcaaattga aaaagatctg
     1861 gaagcagccg gattgctcga aaaaacagaa ccttacacca acaaagtggg ctgctcggaa
     1921 cgtaccgacg ctgtaattga gcccaaactg tcgatgcagt ggttccttaa aatggaacaa
     1981 ttggccaaac cggctctgga agcagttatg agcgacgata tccagcttta tccaccaaaa
     2041 ttcaaaaata cctaccgtca ctggatggaa aacgtgaaag actggtgtat ttcgcgtcag
     2101 ctttggtggg gacatcggat tccggcttac tttctgcctc acggtggctt tgtggtagct
     2161 ttaaccaaag aagaagccta tcaaaaagca ttggctattg tcaattactc attgtcaatt
     2221 gaagatctcc gtcaggacga agactgtctg gatacctggt tctcgtcgtg gttgtggccg
     2281 atttcggtat tcgatggtat caataatccg gaaaatgaag aaatcaatta ttattatcca
     2341 accaatgatt tggtgacagc tcctgaaatt ctgtttttct gggtggcacg tatgattatt
     2401 gccggatacg aatataaagg cgaaatgcca tttaaaaacg tgtatttgac cggtattgtt
     2461 cgcgataaat tgggtcgaaa aatgtcaaaa tctttgggta actcgccaga tccattggat
     2521 ttgattgcac attttggtgc cgacgccgtg cgtttgggca tgctcctcac ctcgcctgcc
     2581 ggaaacgatt tgccttacga cgatagcctt tgcgaacaag gccgtaattt caacaataaa
     2641 atatggaatg ctttccggtt ggtaaaaggc tgggaagtgg ctgacattga gcaaccggaa
     2701 tcggctcgca tggctgtgaa atggttcgat gcgcaactga acaaaacatt actggaaatc
     2761 gaagatctgt ttgacaaata ccgtttatca gaggcgttaa tggcagttta caagctgttc
     2821 tgggacgagt tttcgtcgtg gtacctggaa atggccaaac cggcttacca aaaaccgatt
     2881 gaccgtacta cttacaatgc cacgcttggt ttcttcgatt cgttgctaaa agtattgcat
     2941 ccgtttatgc catttattac cgaagagctt tggcaagcgc ttgaagaccg caaagaaggc
     3001 gaaagtatta tggttgaact gcaaccaaaa gctaccacag ccgatgaaac gctgattggc
     3061 aactttgaat acgcaaaaga aattattgca ggaattcgta ccatccgttt acaaaagaac
     3121 attccaaaca aggaaagtct gagcttggag gttgttggaa gtcacaatgc tgatttcgat
     3181 gcggttattg ctaaacttgg taacctggaa acgatagaaa atgtgactga aaaagcagca
     3241 ggatctattt cattcctggt t
//
LOCUS       DATDNM010000763         2750 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_518869, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000763 DATDNM010000000
VERSION     DATDNM010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2750
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518869"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1485)
                     /locus_tag="VI413_12780"
     CDS             complement(<1..1485)
                     /locus_tag="VI413_12780"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEY6915545.1"
                     /translation="MKKLNSLTYWLLIIVIGFLNLNNAKAGSGDFGAWNQTSNGLNCG
                     NVSFTEKELTLEFWIYIDDQDVAKNITGTSIISNRHDGSTGFTVSLNANTNNANSVDF
                     RFWFKTVSGTAYALWIPRSEFSNKWNHVAFVISSKDKKATAYLNTVQYGNAIENFASD
                     WIGNFKYDATLGANTTTNVGNLWLGTWYTSPKFYGKLADFRVWNKARSIGDIKADYKK
                     VLTGTESGLQKYYTFDNEVFAQKPTKLTIENDNLKWTAEGEYWEVQVRSKTDNSVLRS
                     ETVTEKSFSLVGLEPNSIVYVRTVNNGFYSGWAFKSDIIKVGCVGDSNTYGAEATDRT
                     VYAWPVQIRSMLGSKYETRNFGVNGALMMSDKTDAWKNKTAYSDNKAYDPNIIVIALG
                     TNDSKDGYWDAVKFKNSYIDLINEFKGYSAAPEIYMAIPIKAYASTWSINDQTIREQV
                     IPTIKNISKEMGLPLIDLYAVTNNIANLMAADGIHPKDEGLGIMA"
     gene            complement(1602..>2750)
                     /locus_tag="VI413_12785"
     CDS             complement(1602..>2750)
                     /locus_tag="VI413_12785"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEY6915546.1"
                     /translation="STNSTDGELTYHWEQVSGPVQAAIESATLPVTEIKFNTEGVYVL
                     RLGVSNGTETGSKDVTIKVAYPGSADDLAFRKKATASSSGVVTMYPQAAVDGNDNTRW
                     ASAQKNGEWWQVDLQHQVKPSQILMIWHNEYAKKYNIQISTNGSTWQTYATNDAFSGG
                     TSTNTNTGDLSGRYIRVNCVERSGQWENSIKTFKLYGSFTTNTNQVPVARARYYKQVN
                     YFMLDALESSDADNDGLTYAWSQITGPGFVTIENSTTSVARVSGLQPGSYFFKVTVDD
                     GKDIDFKILHVVVEKEVPQAVSMVSEESGRIKIFPNPAKDQVSIKIADAGNAQIKIID
                     VNGREIFQQSYAGDNCIKLGVAGLLQRGVYFVKATRDNEVSVKKLIVN"
BASE COUNT          790 a          603 c          455 g          902 t
ORIGIN      
        1 tgccattatt cccaaacctt catctttagg atgaatacca tcggctgcca ttaaatttgc
       61 gatattattt gtaacggcat ataaatcaat caatggtagt cccatttctt ttgaaatgtt
      121 ctttatggtt ggaattacct gttcccgtat tgtttgatcg ttgatcgacc aagtactagc
      181 atacgctttg attggtatag ccatataaat ttcaggtgct gcagaatagc ctttgaactc
      241 attaatcaaa tcaatgtatg aatttttaaa cttcacagca tcccagtaac catctttcga
      301 atcgtttgtt cccaatgcaa tgacgataat attcggatca tatgccttgt tatcgctgta
      361 agcggttttg ttcttccagg catcagtttt atcactcatc ataagtgcac cattgacacc
      421 aaaattccgg gtttcgtatt tactacccag catgctacgg atttgtaccg gccaggcata
      481 cactgttctg tctgtagcct cggccccgta agtattgcta tcacctacac aaccaacctt
      541 aatgatatca gacttaaacg cccaacccga ataaaatcca ttgttgactg ttcttacata
      601 cacaatgctg tttggctcta aaccaaccag tgaaaatgat ttttcagtga cagtttcgga
      661 tcttaaaact gagttgtcgg tctttgaacg tacttgtact tcccagtatt ctccttcggc
      721 agtccatttt aggttgtcgt tttcaatcgt aagtttagta ggtttttgag cgaatacttc
      781 gttgtcaaaa gtataatact tttgtaatcc ggattctgtt cccgtcagaa cttttttata
      841 gtcagctttg atatcgccga tactccgagc tttattccac actctgaaat cggctaattt
      901 accatagaat ttcggagatg tgtaccaggt acccagccac aaattgccga cattagtggt
      961 tgtattagca cccaaagtag catcgtattt aaagtttcca atccagtcac tcgcaaaatt
     1021 ttcgatagca ttaccatact gtactgtgtt cagataagct gttgcttttt tgtcctttga
     1081 tgaaatgaca aaggctacat gattccattt gtttgaaaac tccgaacgag gaatccataa
     1141 agcataagcc gtaccactta ctgttttaaa ccaaaagcga aaatcaacac tatttgcatt
     1201 attggtgttt gcattaaggc ttacagtaaa tcccgtgctc ccatcgtgtc tgttacttat
     1261 gatagatgtg ccggttatat ttttcgcaac atcctgatcg tctatgtaaa tccaaaactc
     1321 cagtgtaagt tctttctcag tgaaacttac attaccgcaa ttcaagccat tagacgtttg
     1381 attccatgcg ccgaaatcac cactcccggc tttggcattg ttcaggttta aaaaacctat
     1441 tactatgatt aataaccaat aagtaagtga atttaatttt ttcatatttt atcaaattaa
     1501 acaatgaggc atttttcttg cctcattgtt ttttttatct gtttgttata ataatcatca
     1561 gcgtccattc aattgtcctg aaaaacctat taaacgtaat tttaatttac aataagtttc
     1621 tttactgaaa cctcattgtc tcttgttgcc ttaacaaagt aaacgcctct ttgcagcaaa
     1681 ccagcaactc ccaatttaat acaattatcc ccggcataac tctgttgaaa aatctcacga
     1741 ccattaacat cgattatttt tatttgtgca ttacccgcat cagcaatttt aatggacacc
     1801 tgatcttttg cagggttcgg aaagattttt atccgacctg attcttcaga aaccattgac
     1861 actgcctgag gaacttcttt ttccacaaca acatgaagaa tcttaaagtc aatatctttt
     1921 ccatcatcta ccgttacttt aaagaaatat gatcctggtt gcaagccaga aacccgtgca
     1981 actgaagtgg tggagttttc tattgtaaca aatccaggac cagtgatttg tgaccaggca
     2041 taagttaaac catcattatc tgcatccgaa ctttccagag catccaacat aaaataatta
     2101 acttgcttat aatagcgagc tctggctaca ggaacctgat tagtatttgt tgtaaaacta
     2161 ccatacagtt taaatgtttt aatcgagttt tcccattgac ctgagcgttc aacacaattg
     2221 acccggatat aacgtcctga aagatctccg gtgtttgtat tagtcgaagt acctccacta
     2281 aaagcatcgt tagtcgcgta agtttgccac gtacttccat tagtagaaat ctgaatatta
     2341 tatttctttg catattcgtt atgccaaatc atcaaaatct gggaaggttt tacctgatgt
     2401 tgtaaatcga cttgccacca ctctccgttt ttttgcgccg aagcccaacg ggtattgtca
     2461 tttccatcaa cagcagcctg aggatacatt gtcacaactc ccgacgaaga agctgttgct
     2521 ttttttctga aagcaagatc gtcagccgat ccgggataag caactttaat tgtaacatcc
     2581 ttagaacctg tctcagtacc attggaaaca cctaatcgga gaacgtaaac accttctgta
     2641 ttaaacttta tttccgtgac tggaagtgta gcagactcaa ttgcagcctg aaccggaccg
     2701 gaaacttgct cccaatgata tgtcaactca ccatcagttg aattagtgga
//
LOCUS       DATDNM010000764         2127 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_199017, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000764 DATDNM010000000
VERSION     DATDNM010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199017"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..244)
                     /locus_tag="VI413_12790"
     CDS             complement(<1..244)
                     /locus_tag="VI413_12790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915547.1"
                     /translation="MSDIRENTNPFIFLILVLPYGISTGFVTVTLPFLLTQNGFQVAI
                     AASVTAIGLSANIWRFIWAPMTDLSLSLNKWYVIGTL"
     gene            complement(499..581)
                     /locus_tag="VI413_12795"
     tRNA            complement(499..581)
                     /locus_tag="VI413_12795"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(546..548),aa:Leu,seq:taa)
     gene            complement(597..669)
                     /locus_tag="VI413_12800"
     tRNA            complement(597..669)
                     /locus_tag="VI413_12800"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(634..636),aa:Gly,seq:gcc)
     gene            complement(888..1085)
                     /locus_tag="VI413_12805"
     CDS             complement(888..1085)
                     /locus_tag="VI413_12805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY6915548.1"
                     /translation="MLSKKIGDNAGLVWAALEGGELNVKAVKKATKLAEKDLNLALGW
                     LAREGKVKFNEVEGELFVALT"
     gene            complement(1200..>2127)
                     /locus_tag="VI413_12810"
     CDS             complement(1200..>2127)
                     /locus_tag="VI413_12810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6915549.1"
                     /translation="PFMQGVVTWAIATGKEYNLDYIRLQKKPGLYLKFKYNMADRLIF
                     SKLKQTLGIENANMLPTAGAKLSDDIALFFKSIGVPIVYGYGLTESTATVACYEYTNY
                     EIGTVGTIMPDLEVRIGDENEIQLKGKTIFPGYYNNPEANKAAFTEDGWFKTGDAGYI
                     KDNALVMTERIKDLFKTSNGKYVAPQEIETRLAMDKYIEHVAAIGDERNYITAIIHPA
                     IPALESYAKKNNISYENTEELLKNPAIYRLIEERVGIQQRGMANYEMIKRFALINKSF
                     GIDTGELTNTLKIRRAVVMQKYKTLIDEMYAK"
BASE COUNT          591 a          424 c          389 g          723 t
ORIGIN      
        1 agagtgttcc tattacatac catttattta ggcttaatga taaatctgtc attggagccc
       61 aaataaaacg ccagatatta gcagataagc ctatagctgt aactgaagct gcaattgcaa
      121 cctggaatcc gttctgtgtc aacaaaaaag gtaaagtcac agttacaaag ccagtactga
      181 ttccatatgg cagtaccaga atcagaaaga taaaaggatt tgtattttcc cgaatatcag
      241 acatgctatc tgaacattat tgtgttttac atttctgcta aaatccagtg tgttgtatta
      301 cgaatattgc tccgatatat attattatat aacaacatgt attttcattt gttttgcaga
      361 tcagctgtct tgatcacatg tatatgggat tgactatggg ggcggagtta cttttgagga
      421 tataaaccag gcaactaaaa tcttagattt gtggcaaaaa aaagagacaa actataaata
      481 gaatgtctct ttccgtcgta cccgaagcgg gacttgaacc cgcacagccg taaagccaaa
      541 ggattttaag tccttcgtgt ctaccattcc accatccggg cagaatacga caattgagcg
      601 aaaaacggga ctcgaacccg cgaccccgac cttggcaagg tcgtgctcta ccaactgagc
      661 tattttcgca ttttttgttg ttagaatagt tattatccaa gtctaagatc tcggttctcg
      721 gttctaatat ctattttgct tttctctcaa agcgggtgca aagataggct atttatttta
      781 aatcccgaaa ttttttgccg ggaaaaataa tgatattact attttattgt aacaaaaaag
      841 cgagaaatga atgaatcatt ctcgcttttt tgttatttcc tattcaatta agtcaaggca
      901 acaaataatt cgccttcaac ttcgttgaat tttactttgc cttcgcgagc caaccagccc
      961 agtgctaaat tcaaatcttt ttctgctaat tttgtggctt tcttaactgc ttttacattt
     1021 agttcgccgc cttccagggc tgcccataca aggcctgcgt tgtcgccaat tttctttgat
     1081 aacataatag tttggtttgt aatttagttg tttgtaaaca atatcggcac aaaagtataa
     1141 ataatatgtt ataaaacact caaatgattt aaaatatttg ttctgtctta gattttatgc
     1201 tatttagcat acatttcatc aatcagcgtc ttgtattttt gcattacaac tgctctgcga
     1261 attttcagcg tattggttag ttcgcctgtg tcaatgccaa aactcttatt aattaatgca
     1321 aaacgtttga tcatttcgta attggccatc cccctttgct gaataccaac tctttcttct
     1381 ataagcctgt agatagcagg gttctttaat agctcttcgg tattttcata gcttatattg
     1441 ttcttttttg cataactttc cagggccgga atagccggat gaatgattgc tgttatataa
     1501 tttcgttcat cgcctatcgc tgctacatgt tcaatatatt tatccattgc aaggcgggtc
     1561 tcaatttctt gaggcgcaac atatttccca ttcgaagttt tgaataaatc tttaatacgt
     1621 tcggtcataa ccaaagcgtt gtctttaata taaccggcat ctcccgtttt aaaccagccg
     1681 tcttcagtga aagcggcttt gttggcctct gggttgttgt aatatccggg gaaaatagtt
     1741 ttacctttca gttgaatttc attttcgtcg cctatccgga cttccaaatc cggcataatg
     1801 gtaccaacag tgccaatttc ataattggta tactcatagc aggccacggt ggcggtgctt
     1861 tctgtcaggc catatccgta gacgattggt actccaatgc ttttgaaaaa cagagcaatg
     1921 tcatctgata gtttagctcc ggcagttggt agcatatttg cattttctat tcccagggtc
     1981 tgttttagtt ttgaaaagat cagtctgtct gccatgttgt acttgaactt aagatacaag
     2041 cccggttttt tctgaaggcg gatataatca aggttgtatt cctttcctgt agcaattgcc
     2101 caggtaacca caccttgcat gaatggt
//
LOCUS       DATDNM010000765         3771 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_839493, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000765 DATDNM010000000
VERSION     DATDNM010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3771
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_839493"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2301)
                     /locus_tag="VI413_12815"
     CDS             complement(<1..2301)
                     /locus_tag="VI413_12815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011966358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6915550.1"
                     /translation="MNLNNFTIKSQEVVQHAVELVQSNGQQVIETPHLFKALLTKGED
                     VIQFLFGKLGINKAPMEAVTDSLIAGFPRVSGGEPYLSRETNSVLQKASSLSSKAGDQ
                     FVSLEYILLALVVEKNTMQKVLKDAGINESELQKAINELRKGAKADSATAEEVYNSLG
                     KYAINLNEQARAGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPGVGKTAIAEGLA
                     HRIVRGDVPENLKSKQIFSLDMGALIAGAKYKGEFEERLKSVVNEVIKAEGEVILFID
                     EIHTLVGAGKSEGAMDAANILKPALARGELRAIGATTLDEYQKYFEKDKALERRFQIV
                     TIDEPDVPSTISILRGLKERYENHHKVRIKDDAIIAAVELSSRYITDRFLPDKAIDLM
                     DEAAAKLRLEVDSVPENLDVIERNIKQLEIEREAIKRENDTRKLEQLNEEIANLKEES
                     KVLRAKWSSEKSLIDKIQQAKIEIEDLKYQAERAEREGDYGLVAEIRYGKIKAAESHI
                     AQFQSELATMQGASAMIKEEVDSEDIADVVSRWTGIPVNKMLQSEKDKLLNLEDELHQ
                     RVIGQEEAISAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELAKALAEYLFDDE
                     NMMTRIDMSEYQEKFSVTRLIGSPPGYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHP
                     DVFNVLLQVLDDGRLTDNKGRLVNFKNTIIIMTSNIGSGLIRENFENMNDRNHDEVVE
                     RTKNQVFELLKQTIRPEFLNRIDELIM"
     gene            2554..>3771
                     /locus_tag="VI413_12820"
     CDS             2554..>3771
                     /locus_tag="VI413_12820"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HEY6915551.1"
                     /translation="MRLNWLIILIFFQQLLLAQPAVTVLKNNTDIEVDLNKIKKSVYC
                     EIIFNNGNSDSYSTIKIPYSELIKLSNITASIEDMNGKIIKKLKNSDIESCSNTSNEA
                     FFDDNMIKKFTLKHNVYPYRLKYSYESTESEFIDITFWTPCYDLHVPVMSAQLKITAP
                     RNYPIKYLNHGINYFHTDTLTDKISYCWQTAFYKPIHQEIFSPDEFALLPSVRVFPVD
                     FKYNKPGSFNNWVTYGNWQYEINKDKQQLTDQEITTLKQLTANITDSLTILKTLYHYL
                     EDNTRYINVSIATGGFVPFPAEYVIANKYGDCKALSNYFQAILNYYGFKSHYSKVFAS
                     KTINHTEENFSCPQFNHIILCVPFRKDTIWLDCTSDGPFAYQGTFTQGRKAFIIDKDK
                     SRLVNIPALSANDV"
BASE COUNT         1045 a          912 c          668 g         1146 t
ORIGIN      
        1 cataatcagc tcgtcaatac ggttcaggaa ctccggacga atggtttgct tcagcaactc
       61 aaatacctga tttttggttc tttctacaac ttcgtcatga ttacggtcat tcatattttc
      121 aaaattctcc cgaatcaatc ccgaaccgat attcgaagtc atgatgataa tcgtattttt
      181 gaaattcacc aaccgacctt tattatcagt caatcggccg tcgtccagca cttgcagcaa
      241 tacgttgaac acatccggat gtgctttttc aatttcgtcg aacaacacta ccgaatacgg
      301 tttacgccga atggcttcgg tcaactgacc gccttcgtcg tatcccacat agccgggagg
      361 cgaaccaatg agtcgggtta ccgagaattt ttcctgatac tcgctcatgt caatacgtgt
      421 catcatgttt tcatcgtcga acaggtattc agccagcgct ttggccagct cggttttacc
      481 cacaccggtg gttcccagaa aaataaatga accaatcgga cgtttaggat cctgcaatcc
      541 ggcccgacta cgacgcactg catcggccac agctgagatg gcttcttctt gtccgataac
      601 acgttggtgc aattcatctt ccaggttgag cagtttatcc ttttcgcttt gcagcatttt
      661 attcaccgga atgcctgtcc atcggcttac cacatcggca atatcttcgc tgtccacctc
      721 ttccttaatc atggcacttg ctccctgcat ggttgccagt tccgactgaa attgagcaat
      781 atgcgattca gcagctttga tttttccgta acgaatttcg gccaccagcc cataatcgcc
      841 ttcccgttcg gcacgttctg cctggtattt caggtcttca atctcgattt tagcctgctg
      901 aattttgtca atcaacgatt tttcactcga ccatttggca cggagtacct tgctttcttc
      961 tttcagattt gcaatttctt cgttcaattg ttccagtttg cgcgtatcat tttcacgttt
     1021 aatggcttcg cgttcaatct ccaactgttt gatattacgc tcaataacat cgaggttttc
     1081 aggaacagaa tccacttcca atcgcaattt cgcagctgct tcgtccatca ggtcaatggc
     1141 tttatcgggc aggaaacggt ccgtaatata ccggctcgaa agttccaccg cagcaataat
     1201 ggcatcatct ttaatcctca ccttgtggtg gttttcgtag cgttctttca gtccacggag
     1261 aatggaaata gtgctcggaa catccggttc gtctattgtc actatctgga aacgacgttc
     1321 caacgcttta tccttttcaa aatatttctg atattcatcc agtgtagtcg caccaatcgc
     1381 acgtaattca ccacgggcca gagccggttt cagaatgtta gcggcatcca tggcaccttc
     1441 gctttttccc gctcccacca gcgtatgaat ttcgtcaata aataaaatca cttcgccttc
     1501 agctttaatg acttcgttca ccaccgattt caaccgttcc tcaaactctc ctttgtactt
     1561 cgctccggca atcagtgcac ccatgtcgag cgagaaaatc tgtttcgatt tcaggttttc
     1621 gggtacgtcg cccctgacaa tacgatgcgc caatccttcg gcaatggctg ttttacccac
     1681 accgggttca ccaatcagaa tcggattatt tttggtacgg cggctcagaa tctgaagcac
     1741 ccgacgtatt tcctcgtcac ggccaatcac cggatcgagt tttccggcac gtgcctgttc
     1801 gttcaggttt atagcatatt ttcccaatga attgtaaacc tcttccgctg ttgcagaatc
     1861 agcttttgct ccttttctca attcgttgat agctttctga agttcgcttt catttatccc
     1921 ggcatctttc aatacttttt gcatcgtatt cttttcaaca accaatgcca gtaaaatata
     1981 ctcaagcgat acaaattgat cgccggcttt tgaagacaag gaacttgctt tttgcagcac
     2041 cgaattggtc tcacgactca ggtaaggctc acctccggac acccgtggga agccggctat
     2101 caaactatca gtgacagctt ccatcggggc tttattaata cctagtttgc caaacagaaa
     2161 ctgaatgaca tcttctcctt tggttagcaa tgctttgaac aaatgaggag tttcaatcac
     2221 ttgttgccca ttgctttgaa ccagctcaac tgcatgttga accacctctt gcgatttgat
     2281 tgtaaaattg tttaagttca taatagatat atttttcttt agcgttttaa tcaattcgcc
     2341 tgccacttct tttttctgaa aaaaagtcat acaaattaat taaatcacac tcaatatcag
     2401 acaaatggtc attacttaca tcttatttat gtcattattt cagcaattta cctttctgtt
     2461 tcataaaata tttattttaa aacttttaat ccgcagaaat aatattaact ttggcgacgg
     2521 ttaatattaa gaataaatta aataaaacat ttcatgcgat taaactggct gattatactg
     2581 atcttttttc aacaactgct tctcgcacaa ccagctgtga cagtacttaa aaacaacacc
     2641 gacattgaag ttgatttgaa taaaattaaa aagagtgttt attgtgaaat catattcaac
     2701 aatggaaact cggattcata cagcacgata aaaatacctt attcggagtt gatcaaatta
     2761 tccaatatta cagcatctat cgaagatatg aatgggaaaa ttatcaaaaa gctaaaaaac
     2821 tccgacattg agagttgctc gaataccagt aatgaagctt tcttcgatga taacatgata
     2881 aaaaaattca ccctaaaaca caatgtttat ccttacaggc tgaaatacag ctacgaaagc
     2941 accgaatcag aatttattga cattacgttt tggacgccgt gttatgacct gcatgtcccc
     3001 gttatgtcgg cacaactaaa aattactgcg ccccgcaatt atcccattaa atacctgaat
     3061 catggaatca actatttcca tactgacaca ctcaccgaca aaatcagtta ttgctggcaa
     3121 acagccttct ataaacccat acatcaggaa attttctctc ccgacgaatt tgccttgttg
     3181 ccttcggtac gagtcttccc cgtagatttt aaatacaaca aacccggaag tttcaacaac
     3241 tgggtgacct atggaaactg gcaatatgaa atcaacaagg acaagcagca acttaccgac
     3301 caggaaatca caacattaaa acagctgact gccaacatca ccgatagtct gaccatactt
     3361 aagacattat accattatct tgaagacaat acccggtata tcaatgtttc aatcgcaacg
     3421 ggtggttttg tgccgtttcc ggcggaatat gttattgcca ataaatatgg agactgtaaa
     3481 gccctgagca attattttca ggccatactg aattattatg gttttaaatc tcattattcg
     3541 aaagtattcg cttcgaaaac catcaaccat acagaagaaa atttttcatg cccgcagttc
     3601 aatcacatca ttctttgtgt tccgttccgg aaagacacaa tatggctcga ttgtaccagt
     3661 gacggccctt ttgcttatca ggggactttc acgcaggggc gtaaagcctt tattatagac
     3721 aaagacaaaa gcaggctggt aaacattccg gctttgagtg caaatgatgt a
//
LOCUS       DATDNM010000766         2311 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_731602, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000766 DATDNM010000000
VERSION     DATDNM010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2311
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_731602"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..902)
                     /locus_tag="VI413_12825"
     CDS             complement(<1..902)
                     /locus_tag="VI413_12825"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY6915552.1"
                     /translation="MPQNHLFKIAAISISTLLISSSSTPDKQPTTAAKTTRELYLQYC
                     ASCHGEKLERFAARQWVYGNSLNNVSSTIKNGRPPIGMPGYSKALTDEQIRAMAEYMI
                     AEVPKVPVNEPSRFSIKDTIKSANFSFVLKEVTSGNLPIPWGLAFLPNGDMLVTEKSG
                     KLYLVSKGLMTQIEGLPQIIVKGQGGLMDIAVHPQFKKNHLIYFSYADGDTPSSVCTS
                     IARAELINGRLTHLKRIFHALPNSNSGIHFGGRMIFDKKGYLYFSVGERGTKENAQNL
                     TNYCGKIHRVFDDGRIPADNPFVNT"
     gene            1089..1754
                     /locus_tag="VI413_12830"
     CDS             1089..1754
                     /locus_tag="VI413_12830"
                     /inference="COORDINATES: protein motif:HMM:NF013116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase family protein"
                     /protein_id="HEY6915553.1"
                     /translation="MIYLADTANIAELKELFYYFPLAGVTTNPTIIAAEKKPLSEILP
                     DIIEIVGDKMLHVQMISNKAEDMVREAKAYKKKYSLGDNYFVKIPVSQEGYRAMPMLK
                     DAGFNVTATAIFTQQQALVAARAGADWVAPYVNRLDNISSHGIEVVKHIVENIDKFKL
                     NTKVLAASFKTVDQVHRVSMVGSHAATINHEIIERLRSHPMTDMSLEWFERDAEGLYD
                     IAF"
     gene            complement(1858..>2311)
                     /locus_tag="VI413_12835"
     CDS             complement(1858..>2311)
                     /locus_tag="VI413_12835"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915554.1"
                     /translation="ATSGTVTMLPSTALAKSNQLGTLYNWIGRSCYTGDVYLRKTLVY
                     DFRLYKTALTDEQILTSVLNVGPTISALDVAYAEKPNAVGSLATNQYQVVTTAGTIKI
                     SGLNGTEKVSLFDIAGRQIQVINPTRISTNAGVYIVKINNEATKVVVR"
BASE COUNT          682 a          446 c          479 g          704 t
ORIGIN      
        1 gtatttacaa acgggttgtc agccggaatt cttccgtcgt caaatacccg atgaatcttc
       61 ccgcaataat ttgttaggtt ctgggcattc tcttttgtgc cgcgttcgcc taccgagaaa
      121 tataaatagc cttttttatc aaaaatcatg cggccaccaa agtgaattcc ggaattggaa
      181 tttggcagcg cgtgaaaaat ccgttttaaa tgagtaagtc tgccattaat aagttcggct
      241 ctggctatag atgtgcatac cgaagaagga gtatctccat cggcatagga aaaataaatc
      301 aaatgattct ttttaaactg aggatgaaca gcaatgtcca ttaatccgcc ctgccctttg
      361 acaattattt gcggaagccc ttcaatctga gtcatcaacc ctttggaaac caggtataat
      421 ttgcctgact tttcagtaac cagcatatcg ccattcggaa gaaaagccaa tccccacgga
      481 attggcaaat taccgcttgt aacttctttc aatacaaatg aaaaattagc agacttgatg
      541 gtatccttaa tgctaaacct tgatggttca tttaccggaa ctttaggaac ttcagcaatc
      601 atatattcag ccatggctct tatttgttcg tccgtcaggg ctttgctgta acctggcatt
      661 ccgatgggtg ggcgtccgtt tttaatggta gatgaaacgt tattcagaga attgccatac
      721 acccattgcc gggctgcaaa ccgttccagt ttttcaccat ggcaactggc acaatattgc
      781 aaataaagct cacgggttgt ttttgcagct gttgttggtt gtttgtccgg tgttgatgag
      841 gatgatatta aaagagttga aatggaaatg gcggctatct taaataaatg attttgaggc
      901 atagtcagag tttttaaaga aatgttactg ttgagtaaat aacatgtaaa aatatagatt
      961 gttcaaagcc gttataatag aacgatttac aacacatgat gaataattcc cattattttc
     1021 acacaataaa gcctgtattt aaatctgatt gaagtacttt tgtggtcatt aatcaaaaca
     1081 aatatattat gatttactta gctgatacag cgaacattgc tgaacttaaa gaactttttt
     1141 attactttcc gctggcgggt gtaactacaa atcctaccat tattgcagcc gaaaagaagc
     1201 cactttccga gattttacct gatattatcg aaatagtagg cgataaaatg ctacatgtgc
     1261 aaatgataag caacaaagcc gaagacatgg tgcgcgaggc taaagcctat aaaaagaagt
     1321 atagccttgg cgataattat tttgtcaaga tacctgtgtc gcaggaaggt taccgcgcta
     1381 tgccaatgct caaagatgcc ggtttcaatg taacggctac ggccattttt acacagcaac
     1441 aagcccttgt agctgctcgg gccggtgccg actgggttgc accgtatgta aaccgtctcg
     1501 acaatatttc gtcgcatggt attgaagtgg tgaaacacat tgtagaaaat atcgataaat
     1561 ttaaattgaa tacgaaagtg ctggctgcga gcttcaaaac agtggatcag gtgcatcgtg
     1621 tgagcatggt ggggagtcat gcagccacaa tcaaccacga aatcattgaa cgcctcagaa
     1681 gccaccccat gacggatatg agccttgagt ggttcgaaag agatgccgaa gggttatacg
     1741 atattgcatt ttaagcataa aaaaaagcag gaagttgatt cctgcttttt ttatgttgta
     1801 ttttcaacct gaatggatga ctttgtgagt catccatttt tagtttaaat atattggtta
     1861 tctaactaca acctttgtag cttcattgtt tattttcacg atataaacgc ctgcatttgt
     1921 gctgattctt gtaggattaa ttacctgaat ctgacgacct gcgatatcaa ataaacttac
     1981 tttttcggtg ccgtttaagc cactgatttt aatagttcct gcagtagtta ccacttggta
     2041 ttggttagtt gccagtgagc caactgcatt tggtttttct gcataagcta catccaatgc
     2101 gctaattgtt gggccaacat ttaatacaga cgtcagaatt tgttcatcag tcaaagcggt
     2161 tttgtatagt ctaaagtcgt aaaccaatgt tttacgcaga taaacatcac ctgtgtagca
     2221 cgaacgtcca atccaattgt aaagtgttcc caattggttt gatttagcca gggcagttga
     2281 tggaagcatt gtgacagtgc ctgaagttgc c
//
LOCUS       DATDNM010000767         2480 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_731816, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000767 DATDNM010000000
VERSION     DATDNM010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_731816"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(780..1553)
                     /locus_tag="VI413_12840"
     CDS             complement(780..1553)
                     /locus_tag="VI413_12840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc ribbon domain-containing protein"
                     /protein_id="HEY6915555.1"
                     /translation="MATELKSEKEITVEEKLKALYELQKAVSQIDEIKILRGELPLEV
                     QDLEDEIIGLTTRMENFETEIADVITTIASKKIEIEESRMKIAKYKEQQDNVRNNREY
                     DNLSKEIEFQSLEIELCEKRIREFTAALETKQNEQKISAEQLAERKLDLDQKKGELNE
                     IVSETKQEEEKLREHAKEIESMIEPRLVTAFKRIRKNARNGLAVVYVQRDACGGCFNK
                     IPAQRQLDIRTRKKIIVCEYCGRILVDQELAGVAPVSED"
     gene            complement(1559..>2480)
                     /locus_tag="VI413_12845"
     CDS             complement(1559..>2480)
                     /locus_tag="VI413_12845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEY6915556.1"
                     /translation="NLIISHHPLIFSGLKRLTGQNEVQRCVAKAIKNDIAVYAAHTNL
                     DNVFQGVSGKMAAKIGLKNLRILQPKRNALLKLITYVPQLHSYRVRQSLFEAGAGQIG
                     NYDSCSFNVEGTGTFRANENAQPFVGNINELHSEPETRIEVILPEYLKFKVLQVLLKS
                     HPYEEPAYDFIPLKNDWNQVGAGIVGELEETEDELAFLNRIKGIFNVPTIRHTNLMNK
                     KIKRVALCGGSGSSFLSDAISAGADVYISGDFKYHEFFDAEKRILIADIGHFESEQFT
                     KDIFYEIITKKMPTFAVQISDSKTNPINYL"
BASE COUNT          780 a          438 c          395 g          867 t
ORIGIN      
        1 ttatttaatt aaagctatat gtcaagtaat attgtataat atcactaata aataggtgat
       61 tatgtacaat acgtatatta aatatgtaat atttgactca attatcacta atgtaaacta
      121 taatatgaat acgattatta tatattcatt atatatgact gatttatagt actatatgta
      181 ctgaagtgta agtattccga gataaataca tatataatat tcgctatatt gaatattata
      241 caactgtaaa taaatgtgtg ttacttatgt aacattactc taaaatattt taaattactt
      301 ttgtaatatg cgctattatt tttgtgaata atgtgtagta ttacaaaagt gaatatcaat
      361 ttatctatat ttgtatgcta ggaagtttaa tgaacagtaa aaataaagta cctccaattc
      421 aatcggaggt tcatttgcac tgcaactaat ttattctaaa attgcattac gtattttagt
      481 ttcaaaagaa atggaaagtg tggaaagtac tcttagtcta acccatttta gagtagaaag
      541 cggattaaat cagtcaaaat ctaagaggaa atggcttgaa acttagattg tataattttt
      601 atgacattaa aatttgacat aatactcaaa atatctgcaa gttatacaaa ataatggctc
      661 ttgagaattt aatattcatt tatccttggg actttatacg taaagattaa attctagagc
      721 aaaaaaaaag agtccgaaaa ttaattcgaa ctctttgtaa tattttgaaa tggtataaat
      781 caatcttctg aaaccggagc aactcctgcc agttcctggt cgactaaaat acgaccgcaa
      841 tattcgcaaa cgataatttt cttacgagta cgaatatcaa gttgacgttg tgctggaatt
      901 ttattaaagc aaccaccaca agcatcgcgt tgtacataaa caactgccaa tccattacgg
      961 gcattcttgc ggatgcgttt aaaggccgtt accaaacgag gctcgatcat tgactcaatt
     1021 tctttagcat gctcgcgaag tttttcttct tcctgtttag tttccgatac gatttcgttc
     1081 aactcacctt tcttttgatc caagtctagt ttgcgttcag ccaattgttc tgcggaaatt
     1141 ttttgttcgt tttgttttgt ttccagcgca gctgtaaatt cacgaatacg tttttcgcaa
     1201 agctcaattt ccaatgactg gaattcaatt tctttagaga ggttatcgta ttcacgatta
     1261 ttgcgtacat tatcttgttg ctctttgtat tttgcaattt tcatacgaga ttcttcaatc
     1321 tcaatttttt tgcttgcaat agtggtaatg acatcagcaa tttcagtttc gaaattttcc
     1381 atacgggtag ttaggccgat aatttcgtct tctaaatcct gtacttccaa aggaagctca
     1441 ccacgtaaaa tttttatttc gtcgatttga gaaaccgctt tttgaagctc ataaagcgct
     1501 tttagttttt cctcaacggt aatttctttt tctgatttta attctgtagc catattgatt
     1561 acaaatagtt tatggggttg gttttactgt ctgaaatttg gactgcaaat gtaggcattt
     1621 tttttgtaat tatctcataa aaaatgtctt ttgtgaactg ttcactttca aaatgtccta
     1681 tatcggctat caaaatacgt ttttctgcat caaaaaattc atgatactta aaatcacctg
     1741 aaatatagac atctgcaccc gctgaaatgg catctgacaa gaatgaactt ccggaaccac
     1801 cacacagggc aacacgctta atttttttat tcattaagtt tgtatgacga atagtcggaa
     1861 cattgaaaat accctttatc ctgtttaaaa atgcgagttc atcttctgtt tcttccaatt
     1921 ctcccactat gcccgctccg acctgattcc aatcattttt taaaggaata aaatcataag
     1981 ccggttcttc gtatggatga gatttcaata acacctgaag aaccttaaat ttcagatatt
     2041 caggtaaaat aacttcaatc cgtgtttcgg gttcagagtg caactcgttg atatttccta
     2101 caaaaggttg cgcattttca ttagcccgaa aagtacctgt accctcaaca ttgaaactac
     2161 acgagtcata atttccgatt tgcccggcac ctgcttcgaa aagcgattga cgcacccgat
     2221 acgaatgtaa ttgcggaaca taggtgatca atttcagtaa agcattacgc ttgggctgca
     2281 aaatccgtag attctttagt ccgattttcg ctgccatttt accgctaaca ccttgaaaaa
     2341 cattgtctaa attggtatgt gccgcataaa cggcaatatc atttttaatg gcttttgcca
     2401 cacaacgttg cacttcgttc tgaccggtta gtcgcttcaa accgctaaaa ataagtgggt
     2461 gatgagaaat aatcaggtta
//
LOCUS       DATDNM010000768         2501 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_947020, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000768 DATDNM010000000
VERSION     DATDNM010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2501
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_947020"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2233
                     /locus_tag="VI413_12850"
     CDS             <1..2233
                     /locus_tag="VI413_12850"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6915557.1"
                     /translation="DGVQALKLAGKSALKLSDGRMAFGGFGGINIFDPMLVDKNDKCP
                     EVIFTKLLVSNTVVNPSENSKKQSPLQENITLCKSIELNYDQSIFTLEFIGINYNATQ
                     KINYSYIVEGADSRWNNIGNQNSVTLRNLSPGEYWFKVKASSPDNVWSDRNIKSILII
                     IKPPFWKTWWAYLLYFLLTMGIIYFVWQYATIRVRTSNHLKIERAKREKEEELHQEKL
                     QFFTNISHEFRTPLTLIISPLEKMHQDEVSEDKKAHLKLMLRNAKRLLNMVNQLLDFR
                     KAERGQMRLKVRQHDMVGAINEIILSFNELRFQKNIQLDFIYEEEVLLAWFDPEFLNK
                     ILFNLLSNAFKFTPDYGNILVALNTGKDTQGNRTAHIAVSNNGKGIQPDEIDYVFDRF
                     YQGSEQSSIQEGTGIGLHLTKNLVELQHGTIEVESKPNVKTKFTITLPIEKSAYLSSE
                     LLDEAETQLNTEAEESQTGDTETSQVKTPKTLKEHRKRILIVEDNEDIRSYIHSILDA
                     DYLIDEAENGVAGLEMITLHDFDLIISDIMMPEMDGIDMCKQLKSSIETDHIPIILLT
                     AKSDIENKIEGLSIGADAYITKPFHPNHLIIRVDKLIETREMLKDRFSRRLSLGEAQK
                     TDTNQESTDVLFLQKTISIVLNKMIETEFNGDALAAELGISRMGLHRKIKALTDQSTG
                     EFIRNIRLKKAHELLSIPGKNISEVCYDVGFNSPSYFTACFNEVYKMTPSEYVRSLRF
                     KSE"
BASE COUNT          855 a          504 c          516 g          626 t
ORIGIN      
        1 ggacggcgtt caggcactta agctggccgg gaaaagtgcc cttaaactct cggatggtcg
       61 aatggccttt ggtggctttg gaggaatcaa tatttttgac cccatgcttg ttgacaaaaa
      121 tgacaaatgc ccggaggtta ttttcaccaa actactggta tccaacacag tcgtaaaccc
      181 gtcggaaaac agcaaaaaac aatcgccgct tcaggagaat atcaccttgt gtaaaagcat
      241 tgaactgaat tatgaccaat ctattttcac cctggaattt atcgggatta attacaatgc
      301 cactcaaaaa ataaattact cctatattgt agaaggagct gacagtcgct ggaacaacat
      361 tggcaatcag aattctgtaa cgctgcgaaa cctgagtccg ggtgagtatt ggttcaaagt
      421 aaaggcttcg agccccgaca atgtgtggag cgaccggaac ataaaatcga tactgattat
      481 tatcaaacca cccttctgga aaacctggtg ggcttatctg ttgtactttc tgctgacaat
      541 gggcataata tattttgttt ggcaatatgc aaccattcgg gttcggactt cgaatcacct
      601 aaaaatagag cgtgcaaaac gggaaaaaga agaggaactc catcaggaaa agctacagtt
      661 tttcaccaat atatcgcacg aattccgcac accgctgaca ttaattatca gtccgctgga
      721 aaaaatgcat caggatgaag tgtccgagga taagaaagcg catctgaaac tcatgcttcg
      781 aaatgccaaa cgactgctga acatggtgaa tcagttactc gatttcagaa aagcagaacg
      841 cgggcaaatg cggttgaagg ttcggcagca tgatatggtc ggagccatca acgagattat
      901 actttcgttt aatgagttac gattccagaa aaacatacaa ctcgacttta tttacgagga
      961 agaggtttta ttggcgtggt tcgaccctga atttctgaat aaaatactct tcaatctgct
     1021 ttcgaatgcc tttaaattta ctcccgatta cggaaatatt cttgttgcac tcaatacagg
     1081 caaagataca caagggaaca gaacggctca catagctgtg tcgaacaatg gcaaaggtat
     1141 tcaacccgat gagattgatt atgtgttcga ccggttttat cagggaagcg aacaaagcag
     1201 catacaggag ggaacgggca taggattgca tctgaccaaa aacctggttg agttgcagca
     1261 cggaacaatt gaagtggaaa gcaagccgaa tgtaaaaaca aaattcacaa taacacttcc
     1321 aatcgaaaag agtgcttatc tgagtagtga actgttggat gaagccgaaa ctcagttgaa
     1381 cacagaagct gaagaatcgc aaaccgggga cacagaaaca tctcaagtaa agacacccaa
     1441 aacactgaaa gaacaccgaa aacgcatcct gattgttgaa gacaacgaag atatcaggag
     1501 ctatatccac agcattttag atgccgacta cctgattgac gaagccgaaa acggagttgc
     1561 cggacttgaa atgattaccc tgcacgattt cgacctgatc atcagcgata ttatgatgcc
     1621 ggaaatggac ggaattgata tgtgcaaaca attaaaaagc tctatcgaaa ccgaccacat
     1681 cccgatcata ttgctcacag ccaagtcgga tatcgaaaac aaaattgagg gtttgagcat
     1741 tggcgctgac gcatacatta ccaaaccatt tcatccgaat catcttatta tccgggttga
     1801 caagcttatt gaaacacgtg agatgctcaa agaccgtttt agccgcagac tgtcgttagg
     1861 agaagcacaa aagacagaca caaatcagga atcgaccgac gtgcttttct tacaaaaaac
     1921 aatttcaatc gtattaaata aaatgattga aacagagttt aatggcgacg cgctggcagc
     1981 cgaacttggg ataagccgaa tgggtttaca ccgtaaaata aaagcactga ccgatcaaag
     2041 caccggcgaa tttatacgca acatacgcct caaaaaagca cacgaacttt tatccattcc
     2101 gggtaagaat atatcggaag tatgctatga tgttggtttt aattctccct cctatttcac
     2161 tgcatgtttc aacgaggtat ataaaatgac acccagcgaa tacgttagga gcctgagatt
     2221 taaatcggaa tagaaattag tatcagacat tttagtacat gacgaaaaga acaatataac
     2281 aactaatgta cacagaataa acagattaaa tctaagatgc cacaaaaaaa ggcacaaaag
     2341 aatcacaaaa gttatgttta aatacttcca aaggcaatat taagaacata aaagaaactt
     2401 ctgtattcaa tattagtttt aaaatgcatc tagtattttt acttttgttc cctatcttgt
     2461 aatgtataat tgcttttgtg attcttttgt gccttttgtg g
//
LOCUS       DATDNM010000769         2344 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_92031, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000769 DATDNM010000000
VERSION     DATDNM010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92031"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..781)
                     /locus_tag="VI413_12855"
     CDS             complement(<1..781)
                     /locus_tag="VI413_12855"
                     /inference="COORDINATES: protein motif:HMM:NF017416.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEY6915558.1"
                     /translation="MPKDNFYRRLKELLDLSFVRKQTIAYYGKDGQKSIDPEVFFKLM
                     LIGYIENLNSDRKIVENASMRMDMLYFIGYDVDEVLPWHSTISRTRKLYGEELFLEVF
                     RKVLSLCIDKGMVNGRRQAVDSAYVKANASMDSVIREEIMADSKNFMNELSDNEEDKN
                     PDTKVKNSKRGKANKDWTSPADPDARMSKKGGKELQLNYTAQVSVDTDSHVICGALVD
                     FADKRDAQSLSKIVDQTSESMDKRGIPVQEVLADTNYSSGDA"
     gene            complement(1064..1189)
                     /locus_tag="VI413_12860"
     CDS             complement(1064..1189)
                     /locus_tag="VI413_12860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915559.1"
                     /translation="MTIALRASELALTIRAQYEIIEPYAKHWGKIFYTFWAIFAK"
     gene            complement(1335..1853)
                     /locus_tag="VI413_12865"
     CDS             complement(1335..1853)
                     /locus_tag="VI413_12865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915560.1"
                     /translation="MKIVKLFSLLIVLFLFQINLFGQNEIQDTNQFAIKAIRQAVIQY
                     HQQKYVGYKKYMVISMKIMSINITSGEFVLSYFFNDSEYKYLNPTHYVHVNNELILIK
                     VDSLCQADPRRYGITKITEEIKKEALNKSAGSGVAITGRDAPLMIFNYNKNCIKGEFF
                     EGPPWPEKKYWF"
     gene            complement(2132..>2344)
                     /locus_tag="VI413_12870"
     CDS             complement(2132..>2344)
                     /locus_tag="VI413_12870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915561.1"
                     /translation="KNGNNTKYQFWQQHNQPIELTVKAFAIDSSIDYIHNNPVKAGFV
                     NRAEDYPYSSAIDFAGGKGMVDIEPC"
BASE COUNT          712 a          475 c          351 g          806 t
ORIGIN      
        1 aagcatcacc actactatag tttgtatccg ctaaaacctc ttgtacagga atacctcttt
       61 tatccatact ttcactagtc tgatctacaa tcttagataa agattgagca tcgcgcttat
      121 ctgcaaaatc taccagtgct ccacatatca catgtgagtc cgtatcaaca cttacctgtg
      181 cagtataatt taattggagt tccttgccac ctttctttga cattcgtgca tctgggtcag
      241 ctggactggt ccaatcttta tttgcttttc ctctttttga gttctttact ttcgtgtcgg
      301 gatttttatc ttcctcatta tccgataatt cattcatgaa gttttttgaa tcagccatta
      361 tctcttctct aatgacacta tccattgagg cattggcttt tacataagca ctgtcgactg
      421 cttgacgacg accattgacc atacctttgt caatacataa agacaatact tttcggaata
      481 cttctaaaaa caactcttca ccgtaaagtt tacgggtacg gcttatagta ctgtgccaag
      541 gtagaacttc atccacatcg taaccaataa agtaaagcat atccatacgc atggaagcat
      601 tttcaactat cttacggtct gaatttaagt tctcaatata acctattagc attaatttaa
      661 agaaaacctc agggtcaatg ctcttttgac catccttacc gtagtatgct atagtttgct
      721 tgcgtacaaa cgacaaatcc aacagctctt tcaaacgacg ataaaagttg tcttttggca
      781 ctctatctta caattgaaaa ttgagaaaca acttttcctg atagttcttt ttaccttgca
      841 tagttccttg tatttgactc aaatatagtt aaatatatcg aaataaacaa gtatatttgc
      901 aacttatttt agttgtgcaa cagccaccga agccttcgcc aaacaaccac tacgccaacc
      961 tacgctcaac tgaggaatgg aaaaacatac tctggagaaa ccttgcccga tggattatat
     1021 attgtccctt tacaggatgg taaaataaaa caaactgcaa aaatcatttt gcgaaaatag
     1081 cccaaaaggt atagaatatc ttgccccaat gtttggcata tggttctatg atttcatatt
     1141 gggcacgtat ggttaacgcc aattctgaag cacgaagtgc tattgtcatt catattattt
     1201 ctgtataact cgttttaaac caataaaaat agaaaatggc aggcatacac tcaccatctt
     1261 ccattctatt tctgcaaata actattgatt tacagactta tatttatcca acgccaaatc
     1321 tgaagcatta ccacttaaaa ccaatacttt ttttcaggcc aaggtgggcc ttcaaaaaac
     1381 tctcctttta tacagttttt attatagtta aaaatcatta ggggagcatc tcgtcctgta
     1441 atagcgacac cagacccagc tgatttattt agtgcctctt tttttatttc ttccgtaatt
     1501 ttagttattc catacctcct cggatcagct tggcacaaac tgtctacttt tattaaaata
     1561 agttcgttgt taacatgaac ataatgagtt ggatttaaat atttatattc agaatcatta
     1621 aagaagtagc tcagaacaaa ctcacccgat gtgatattta tactcataat tttcatgcta
     1681 ataaccatgt actttttata ccctacatat ttttgctgat ggtactgtat gacagcttgt
     1741 cttatcgctt tgattgcaaa ctggtttgtg tcctgtattt cattttgtcc aaacaaattg
     1801 atttgaaaca aaaatagaac gatcaataaa ctaaataatt ttacaatttt catatttaaa
     1861 tttatttatt aaaaactgct ggagttgtcg ttgttatcag atttggttgt gcgagccaat
     1921 gtattctgtc atccaaataa aatgggtttg ttttctttct cccatcaata gttaaatcag
     1981 tagcgtcgta taccccagaa gcaaaagttt tataatcata ttgtttatat ctatcccccc
     2041 tagtggtcta agtttgcatc ccactggata gttcaagttt agcgaagcgt aacttggact
     2101 gaaaaccaaa gcagtttgca actggttgct attagcatgg ttcaatatcg accattcctt
     2161 tcccaccggc aaaatcaata gcactactat atggataatc ttcagctcta ttgacaaaac
     2221 cggcctttac cggattatta tgaatataat cgatagatga atctattgca aaagctttta
     2281 cagtaagttc aatgggctga ttatgttgtt gccagaattg atattttgtg ttatttccat
     2341 tttt
//
LOCUS       DATDNM010000770         3647 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_947133, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000770 DATDNM010000000
VERSION     DATDNM010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3647
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_947133"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..410
                     /locus_tag="VI413_12875"
     CDS             <1..410
                     /locus_tag="VI413_12875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915562.1"
                     /translation="ITPELSIQYYGSPFATVGKFSEFKRVTNSQASSYNDRFSVLMPT
                     LNGNTYSVSENNNGITNYSFQNPNFDFCQFRSNLVFRWEYRPGSQFYMVWSQDRTAFT
                     QPGSQILKQGITGLNNIFPNNIILAKFNYWFSI"
     gene            606..1970
                     /locus_tag="VI413_12880"
     CDS             606..1970
                     /locus_tag="VI413_12880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 27 protein"
                     /protein_id="HEY6915563.1"
                     /translation="MKHKLTVLLTLLMAVSLCSIDAQTDSKYHQWASTPPLGWNSWDC
                     FGTTVTEQQIKEQADAMAKYLLPSGYKYLTVDIQWYEPEAKGHAYDPNATLTMDEYGR
                     LMPGLKKFPSAADGKGFKHLANYVHSKGLKFGIHIMRGIPRQAVDKNTPVLGTNAKAQ
                     DIAIKSSTCFWNPDMYGVDATKPEGQAYYNSIVQMYADWGVDFIKCDDIARPYDNVQQ
                     AEIEALRKAIDKTGRPIILSLSPGATPVKMGEHVMNHANMWRITDDFWDRWELLQAMF
                     ERLDVWTPFRGAGHFPDADMLPIGIVEFKRPTNFTKDEQYTLMSLWAIGRSPLILGGD
                     MTKLDDFTKEILTNPEMLKVNQYSINNRQVSRDKNLIVWTADVPNSKDKYVALFNAQS
                     KGENIDFNNADQVNVNFEAIGIKGKAKVRDLWSHKDLGTFNGSFGRELPQHGAGLYRI
                     SPLR"
     gene            2066..>3647
                     /locus_tag="VI413_12885"
     CDS             2066..>3647
                     /locus_tag="VI413_12885"
                     /inference="COORDINATES: protein motif:HMM:NF027814.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NPCBM/NEW2 domain-containing protein"
                     /protein_id="HEY6915564.1"
                     /translation="MIYSLFVKIKPAILLTFLVAIKMLAGDALSAQTVWLDQLDLSNV
                     TQGYGSPGVNRSIDGKTLTIAGKTFERGVGSHSVSSLTVLLEGKVKSFSALVGIDDEV
                     KGNDPAAEFELYADGKKIWSSGLMKFGDAARPCNVNLDGVKKLELVVTDGGNGNNYDH
                     VDWVDAKFETTGANILKTYSPVPTEPYILTPKASDKPKITGAKVFGVRPGSPFQFLVT
                     ATGSRPMKFTAKGLPKGLKINSNTGLITGKLSLAGTYYVMLTATNAKGIAKRELRIVC
                     GDRISLTPPMGWNSWNCFANEVTADKVKRAANALVKSGLINHGWTYVNVDDFWENHRD
                     SKDSTLRGKFRDEAGYIIPNVRFGNMKALADYIHGLGLKIGLYSSPGPWTCGGCAGSY
                     GYEKQDAESYAKWGFDYLKYDWCSYGNVIDGLPGNDANKISSFSYNGGNELNNAQKPY
                     KIMGKYLRQQPRDIVYSLCQYGMSDVWKWGDSVGGNCWRTTNDINDTWASVKNIALDQ
                     DRSAAWAKPGTGTTLICWW"
BASE COUNT         1070 a          726 c          847 g         1004 t
ORIGIN      
        1 atatcactcc agagctatcc atacagtatt atggaagtcc gtttgccacg gtaggaaaat
       61 tctcggaatt taaacgggtg acaaactcac aagcaagcag ctataatgac cgcttttcag
      121 tcctgatgcc tacattaaat ggaaatactt attcagtttc ggaaaacaac aacggaatta
      181 caaattatag ctttcagaat ccgaatttcg atttttgtca atttcgttcc aatttagttt
      241 ttcggtggga ataccgtccc ggatcacaat tttatatggt ctggtcgcag gataggactg
      301 cgtttaccca gcccggtagc caaattttaa aacaaggaat aacaggtctg aataatatat
      361 ttccaaacaa tattatactt gctaaattta attattggtt ttcaatttag tgtttaaaat
      421 atggacccgg gaaggactgg tagaactagt agaacgaacc ggggtatcac gttttttata
      481 ttaacaatca atcatataga aaatttgttt tattaataaa tattattcct gttacatata
      541 tgtttaattt attgtgttta aacgctataa ttttttattc tacataaact ctaatatact
      601 caaaaatgaa acacaaactc acagtgcttt tgactctgct tatggcagtt tcattatgca
      661 gtattgatgc tcaaacagat tctaaatacc accaatgggc ttccacgccg cctcttggct
      721 ggaatagctg ggattgcttt ggtactacag ttaccgaaca gcaaataaaa gaacaagccg
      781 atgccatggc aaaatacctt ttgccgagcg ggtataaata cctcacagtg gatattcagt
      841 ggtacgagcc agaagctaaa gggcatgctt atgatcctaa cgctacgctc acgatggatg
      901 aatacggtcg attaatgccg ggtctgaaaa agttcccttc ggcagctgac ggcaaaggat
      961 tcaaacacct tgcgaactat gtgcactcta aaggactgaa attcggcatt catatcatgc
     1021 gtggaattcc ccgtcaggct gttgataaga atacccctgt acttggtaca aatgccaagg
     1081 ctcaggatat tgccattaaa agctctacct gcttctggaa ccctgatatg tatggcgtag
     1141 atgccactaa gccggaaggt caggcttact acaactctat tgtgcagatg tatgccgact
     1201 ggggagtgga ttttatcaag tgcgacgata ttgcacgacc atacgacaat gtgcaacagg
     1261 ccgagattga ggctcttcgt aaggcgattg ataaaactgg tcgcccgatc atcttgagct
     1321 tgtcgccggg tgcaacgccg gttaagatgg gcgaacatgt gatgaatcat gccaatatgt
     1381 ggcgaatcac cgacgatttt tgggatcgtt gggaattgtt gcaagccatg tttgagcgtc
     1441 tggatgtgtg gacgccattt cgtggagcgg gtcatttccc cgatgccgat atgcttccca
     1501 ttgggattgt tgagtttaaa cgccctacca attttactaa agatgagcaa tatacgctga
     1561 tgagcctctg ggctattggt cgttcgcctc ttattcttgg aggagacatg accaagctcg
     1621 acgatttcac gaaagagata ctcaccaacc ctgaaatgct caaggtaaac cagtacagca
     1681 taaacaaccg tcaggtgtcg cgcgataaaa atctgattgt gtggacagcc gatgtgccta
     1741 acagtaaaga caaatatgtg gctcttttca atgcacagag caaaggagag aatattgatt
     1801 tcaacaatgc cgatcaggtc aatgtaaact ttgaagccat tggtataaaa ggcaaagcca
     1861 aagtgcgcga tttgtggagt cacaaagacc ttggaacttt taatggaagt ttcggacgcg
     1921 aattgccaca gcatggagcc ggattgtacc gaataagtcc gctgcgttaa tgccttcaga
     1981 atcaaaactc aatctcattt tggttgaaga attacgttta aaattggaac atacaaatca
     2041 ctgtaaaaac tcaagaattt ccttcatgat atactcttta tttgtgaaaa taaaacctgc
     2101 aattctgctt acattccttg tcgcaattaa aatgttggct ggagatgctc tttcggctca
     2161 aacggtatgg ctcgatcagt tggatttaag caatgttacg cagggctatg gttcacccgg
     2221 tgtaaacagg tcaattgatg gcaagacact aactatagcc ggtaaaactt tcgaacgggg
     2281 agtggggtcg cactctgtga gttcgctgac cgtactgctg gaaggcaagg taaaatcttt
     2341 ctcggctttg gtcggtattg atgacgaggt taaaggaaac gaccctgcgg ccgagtttga
     2401 attgtatgct gatggtaaaa aaatctggtc aagtggactt atgaagtttg gcgatgctgc
     2461 cagaccatgc aacgtaaacc ttgacggggt gaaaaaactt gagttggtgg taacggatgg
     2521 tggaaacgga aacaattatg accatgtgga ttgggtggat gcaaaatttg agaccacagg
     2581 ggcaaatatc ttgaaaactt atagtcctgt tccaaccgaa ccgtatattc ttacccctaa
     2641 agcttcggat aaacccaaaa taacaggtgc aaaagttttt ggagtgcgtc cgggatcccc
     2701 atttcaattt ctggtgactg caacaggatc tcgcccaatg aaatttacag ctaaagggct
     2761 tcccaagggg ttgaaaatta attccaatac aggtctcatt acaggtaaac tatctctggc
     2821 gggtacttat tatgttatgc ttactgccac gaatgcaaaa ggcattgcca aaagagaact
     2881 gcgcattgtt tgtggtgacc gtatttcact cactccccct atgggttgga acagttggaa
     2941 ctgctttgcc aacgaagtga ctgccgataa agttaaacgg gctgctaatg cacttgtaaa
     3001 gagcggattg atcaatcatg gttggactta cgtaaatgtc gatgacttct gggagaatca
     3061 ccgcgattcc aaagactcca ctttacgtgg caaatttcgc gatgaagcag gatatattat
     3121 acccaatgtc aggttcggga acatgaaggc attggccgat tatattcatg gtcttgggct
     3181 gaaaataggt ctttattcaa gccctggccc ctggacgtgt ggcggttgtg ccggtagtta
     3241 cggctacgaa aagcaggatg cagagagtta tgccaaatgg ggtttcgact acctgaaata
     3301 cgattggtgc agttatggaa atgtgattga tggtttgccc ggaaatgatg caaataaaat
     3361 ctcttctttt tcttataatg gcggaaatga attgaacaac gcccaaaaac cgtataaaat
     3421 catgggtaaa tatctacgtc agcaaccccg cgacattgtg tacagtttgt gtcaatacgg
     3481 tatgtcggat gtgtggaaat ggggcgattc tgttggtggt aactgctggc gtacaacaaa
     3541 tgatattaac gacacctggg caagcgtaaa aaatattgca ctggatcagg ataggtctgc
     3601 tgcctgggcc aaaccgggca ctggaacgac cctgatatgc tggtggt
//
LOCUS       DATDNM010000771         4780 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2016148, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000771 DATDNM010000000
VERSION     DATDNM010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4780
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2016148"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(335..793)
                     /locus_tag="VI413_12890"
     CDS             complement(335..793)
                     /locus_tag="VI413_12890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEY6915565.1"
                     /translation="MKSIKQFLATDQQSWSLLLVRIALGIVILPHGMQKALGLFGGYG
                     FAGTVGFFQSMGMPFLIGTLVILAEFVGSIGLILGFGTRFMAFSVGLTMAGAAVLGGH
                     LNNGFFMNWFGMQKGEGLEYFILVVGMALAVLISGSGKYSFDNLILKKIK"
     gene            complement(841..1557)
                     /locus_tag="VI413_12895"
     CDS             complement(841..1557)
                     /locus_tag="VI413_12895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEY6915566.1"
                     /translation="MKTILHKSETRGHANHGWLDSHHTFSFANYYDPERVHFGALRVL
                     NDDRVAAGEGFGTHPHDNVEIISIPLFGDLEHKDSMGNHGVISTGEIQVMSAGTGIFH
                     SEFNKNKDKETRFLQIWVFPNKKNVTPRYDQISLAEIEKPDEFYQILSPNPNDQGVWI
                     HQNAWFHLGDLSEGWEGKYELKDKKNGVYFFVIEGNVTVAGQELNARDGFGVSEAESI
                     DIKSTAITKLLVMEIPMTTN"
     gene            complement(1759..2649)
                     /locus_tag="VI413_12900"
     CDS             complement(1759..2649)
                     /locus_tag="VI413_12900"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6915567.1"
                     /translation="MNMQHKDIKTYAFSEMSQQYSNFALKRMEDIYRSTNGAPDVPHR
                     HEYYTIIFIEKGEGTHFVDFTEYKIEDRTVYFIQPGQMHQVIFTAEPVGWVVTFTEEF
                     LIANSIPEKMINDIYLFNDYGQSPPLPINERDFPVYKSLIEQMAHFAASLETYTLEAV
                     GSLVKLFLIQSNNHCTLRKSNNPQLIETSNHILRTFKQLLNKKYAKSHMVSDYADELA
                     VTADYLNKTVKNLTGKSAKDHIQSKLITEAKRSLLFSNISNKELAYELGFDESAHFNN
                     FFKKITGQTPSEFRVLARQS"
     gene            complement(2788..4131)
                     /locus_tag="VI413_12905"
     CDS             complement(2788..4131)
                     /locus_tag="VI413_12905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008675602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6915568.1"
                     /translation="MTFDKLDLIEPILNALQHEGYNQPTPIQEISIPIVLKGKDLLGC
                     AQTGTGKTAAFAIPILQQLHKLRGNEKLHRKIKVLVVTPTRELAIQIGESFAAYGRFM
                     NFRHTVIFGGVPQNPQVNTLKAGVDILIATPGRLLDLQSQGYIKLNDLSIFVLDEADR
                     MLDMGFIHDVKKLIKIIPAKRQSLFFSATMPDSIRVLAGTILTNPEEVAVTPVSTTAE
                     TIQQEMYYVAANDKKDLLIHLLQDKSIKTALVFTRTKHGADKIQRILVKANIKAEAIH
                     GNKSQNARQNALRNFKERSTRVLVATDIAARGIDIDDLNLVINYEIPNIPETYVHRIG
                     RTGRAGLDGKAISFCDEEELEYLRDIQKLISIEIPLITDQPYAADYVLTDKRSKIKPK
                     VATRGKGSGIDPGKGKRRIGTDRNVSKPQTSKTPVSTAAKSESTAKKVFVLKTGR"
BASE COUNT         1460 a          941 c          844 g         1535 t
ORIGIN      
        1 aaacttgaag atgatgacaa gtcaccattt accgcgtaag ctacacagat acctaaggct
       61 gtgattaaaa caaaaagaag agccggaaca gaattaatat ttttcatttc ttttcaaatt
      121 tagaaggtta cggattttat atcaatggta gacaaatcat ttttgaatgt aaagattaag
      181 caaaacgaat ccggcatctc gaatactgtt atatataaac aattaacttg aatgataagt
      241 tttcaaaaag aacttataaa gcactgaaaa acaaagggca gatctttgca gacccaccct
      301 ttgtaaactt aatttatttt cttattttaa tcccttattt aattttcttc aaaataagat
      361 tatcgaacga atattttcca cttccactta tcagaaccgc cagggccatt ccaacaacaa
      421 gaataaaata ctcgagacct tcgccttttt gcataccgaa ccaattcata aagaatccgt
      481 tgttcaggtg accacctaaa actgccgctc cagccatagt taaaccaact gagaatgcca
      541 taaaacgtgt tccaaagcct aaaatgagtc cgatactacc tacgaattcg gctagtatta
      601 cgagagttcc gattaaaaat ggcattccca tgctttggaa aaagcctact gttccggcaa
      661 aaccataccc accgaaaagt ccaagggctt tttgcatacc atgtggtaaa attacaatac
      721 ctaacgctat acgtactaaa agtaatgacc atgattgttg gtctgtagct aaaaattgtt
      781 tgattgattt catctcttct attttttaat tatttatttg atttttaata ttttatattt
      841 ttaatttgta gtcattggaa tttccattac caataatttc gtaatcgcag tggattttat
      901 atcaattgat tccgcttcac tgacaccgaa tccatccctt gcgtttaatt cctgtcctgc
      961 aacggttaca tttccttcaa ttacaaagaa atagacaccg tttttcttgt ctttcagttc
     1021 atattttcct tcccaacctt cggacaaatc acccaagtga aaccatgcat tctgatgaat
     1081 ccacacaccc tgatcgtttg gatttggcga aagaatctga taaaactcat cgggtttctc
     1141 aatctcagcc aacgaaatct gatcgtaacg tggagttaca ttctttttat tcgggaaaac
     1201 ccaaatttga agaaaccttg tttctttatc cttattttta ttgaattcgc tgtggaatat
     1261 accagttccg gcactcataa cctgaatttc tccggtacta attaccccat gattgcccat
     1321 gctgtcttta tgttccaaat cgccgaaaag gggaatggaa ataatttcca cattgtcgtg
     1381 tggatgggtt ccgaaacctt caccggcagc aacccggtcg tcgttcaata cccgtaaagc
     1441 tccaaaatgc actctttcag gatcgtaata attggcgaaa ctaaatgtgt gatgcgaatc
     1501 cagccaacca tgattggcat gtccgcgcgt ttctgattta tgcaatattg ttttcataac
     1561 tttgttgttt ttacccctaa cccctaaagg gaaacttggt tactattgtc ttttaaatta
     1621 aaaggaaata attgacgaaa ctaacttagt ccccctttag gggttagggg tcattttttt
     1681 ctttcctttt tgatacgaca aaggtacggc agcaaaatgc tccgcaaagt aaagaaatcg
     1741 ggtgaatgat tgcaaaaatc aggactgacg tgctaaaaca cgaaattcgg agggagtctg
     1801 accggtaatt ttcttgaaaa agttattaaa atgcgccgat tcgtcgaaac caagttcata
     1861 agccaactct ttgttactta tattactaaa aagcaatgac cgtttggctt cagtaattaa
     1921 tttactctga atatgatctt tagctgattt gccggtaagg ttttttacgg ttttattcag
     1981 ataatcggca gtaactgcca attcgtcggc gtaatcggaa accatgtgcg acttggcata
     2041 ttttttattc aacaattgtt tgaacgtgcg gagaatgtgg ttactggttt caatcagttg
     2101 cgggttattg ctttttcgca aggtgcaatg attattgctt tgaatcagga acagtttcac
     2161 caacgaaccg acagcttcga gtgtatatgt ttcaagcgat gcggcaaaat gtgccatttg
     2221 ttcaataaga cttttataaa cggggaagtc tctttcatta ataggaagtg gtggtgactg
     2281 accgtaatcg ttgaaaaggt aaatgtcatt tatcatcttt tcggggatgg aattggctat
     2341 caaaaattct tcggtaaaag taacaaccca accaaccggc tctgcagtga aaataacctg
     2401 atgcatttgg cccggttgaa taaagtaaac ggtacggtct tctattttat attcagtaaa
     2461 atctacgaaa tgtgtccctt cacctttttc aatgaaaata atggtataat attcatggcg
     2521 atgcggaaca tctggagcac cattagtact tcggtaaata tcttccatac gtttcagcgc
     2581 aaagttggaa tattgttgtg acatttccga gaaagcgtaa gtttttatgt ctttatgctg
     2641 catattcatg gtggcaaaga taatctaatt ctataaatca tttaatgaaa aaacatatta
     2701 ccactaaaaa cacaaaaggc atataaaagt tttactcaaa cttacatata ccttctgtag
     2761 tacttatatt acatttaatc gttaatatta tctgcccgtt ttcagaacaa aaaccttttt
     2821 agctgtactt tctgattttg cagctgttga aaccggagtt tttgaagttt gcggtttgct
     2881 tacatttcta tcagttccta tacggcgttt acctttaccc gggtcaatgc ctgaaccttt
     2941 accacgtgtg gcaactttcg gtttaatttt agacctttta tctgtcaaca cataatcggc
     3001 agcataaggt tggtcagtaa ttaaagggat ctcaatcgaa atcagctttt gaatgtcacg
     3061 caaatattca agttcttctt catcgcaaaa cgaaatggct ttaccatcga gtccagccct
     3121 gcccgtacga ccaatgcggt gaacgtaagt ttcagggatg tttggtattt cgtagtttat
     3181 taccagattc aaatcgtcta tatcaatacc tcgtgcagca atatcagttg caactaacac
     3241 gcgggttgaa cgttctttaa aattgcgcaa cgcattctgg cgggcattct gcgatttatt
     3301 gccgtgaata gcttctgctt ttatatttgc ttttacaagg attcgttgaa ttttgtcggc
     3361 accatgcttg gtacgggtaa agaccaatgc agttttaatt gatttatcct gaagcaagtg
     3421 aatcaacaaa tcttttttgt cgtttgcagc cacataatac atttcctgct gaatggtttc
     3481 agccgttgtt gatacaggcg taacggccac ttcttctgga tttgttagaa ttgttccggc
     3541 caatacgcga attgaatcgg gcatggttgc cgaaaagaat agggactggc gttttgcagg
     3601 aatgattttt atcagtttct ttacgtcgtg aataaaaccc atgtcgagca tacggtcggc
     3661 ttcgtcaagc acaaaaatgc tcaggtcgtt caactttatg tatccctggc tttgcaaatc
     3721 gagcaaacga ccaggcgtag ctatcaaaat atctactccg gctttcagcg tgttcacctg
     3781 agggttctgc ggaacacctc caaaaattac agtatgtcga aaattcataa aacgcccgta
     3841 agcagcaaaa ctttcaccaa tctgtatagc cagttcgcgt gttggagtta caactaatac
     3901 ctttattttg cgatgcaatt tctcgttacc tctgagttta tgcagttgtt gtagaatagg
     3961 aatggcaaaa gcagccgttt taccggttcc ggtttgtgca catcctaata agtctttacc
     4021 tttaagtaca atgggaattg aaatttcctg aataggggtt ggttggttat aaccttcgtg
     4081 ttggagagcg tttaagatcg gctcaataag atctaattta tcaaatgtca tagaatattt
     4141 aacgcatccg ttcttctttc acaagctcta aatttacacc tgacggaata cgattttgtg
     4201 caaaggtaca gaaaataaac ggagaaggca aaaatcattt attatacgaa cttttgataa
     4261 cttttcgtgt tcgcccacgg ttttattcat aaaattccat gtgaaacaca gaaatacatc
     4321 attttgttgc acaagaaatc ccaatttgcg catattttaa tatattttaa taataaaaac
     4381 aacaaaaaca agttggtcga ccaattaaat tacttatttt tgctgcggaa ttaaatcgaa
     4441 gatattaaaa atcgaacatt tccaactgaa tgattcgcta aaatgaatta atcacaatta
     4501 accttgaatt tcttgaaact aaatctccca tcctgttttt acatcagaaa aacatacgca
     4561 tcatcgttgc agtatagttc ttcctgaatc atttcacatc ctctttataa aagctgtaat
     4621 atgaaccgga acattaccgg agcaagttac aacacatcct gaaaccaaat agttaacttt
     4681 taaatataat tataatttta aaccaaaatc taatgagtaa tgctgatacc gtttcaacgg
     4741 atattttaat tattggaggc ggcccatccg gtttagccac
//
LOCUS       DATDNM010000772         3088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2016349, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000772 DATDNM010000000
VERSION     DATDNM010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3088
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2016349"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..792
                     /locus_tag="VI413_12910"
     CDS             100..792
                     /locus_tag="VI413_12910"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007748394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEY6915569.1"
                     /translation="MSKLQKSALIVGAVLLIDQILKIWIKTNMALGDEFSVIGNWFVI
                     HFVENNGMAFGFEFGGDYGKIFLSLFRVFAVFGIGYYILKLVKKDIPMGFIACVALIF
                     AGAIGNIIDSAFYGLIFSDSYGQVATLFPKGGGYATFLHGRVVDMFYFPIISGVFPDW
                     MPIIGGSDYQFFRPVFNVADSAISVGIFAIILFYRKEFSELTSKEHSHEKEETEVANE
                     QVTAPEKESHEI"
     gene            910..983
                     /locus_tag="VI413_12915"
     tRNA            910..983
                     /locus_tag="VI413_12915"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:944..946,aa:Ile,seq:cat)
     gene            complement(1000..1947)
                     /locus_tag="VI413_12920"
     CDS             complement(1000..1947)
                     /locus_tag="VI413_12920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915570.1"
                     /translation="MKLYLLAPILLILLSCNSPSSQTTRATDIDSIPEGAVSFEYDFN
                     LKRAILIPGTLNDSVPLWYFLETGFLKMTFSDSLTSDFEKKEDKNGFRKIEKTMEVRI
                     GGFERIYGDSVDAYCFDKNDMLFRWRGTGGILPWQFFDQKIIEISFSKQYIRELSGTR
                     DLTGYDSVKMEVENGFLGIPVAVSVQGKKIKAVVTIDTGCNGDISFSNNIIFKYGIKS
                     DNAFFGKAHLLHGFNSAFSFKSDTVQVGKFILTQNNYVSFSLDRQRPYPFSGLLGNGI
                     LEKFDLVLDLRNYYLYLKPTPKSLLQPDIKQKTPTQVHV"
     gene            2207..>3088
                     /locus_tag="VI413_12925"
     CDS             2207..>3088
                     /locus_tag="VI413_12925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018337383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY6915571.1"
                     /translation="MQSNTDPKIFFKTREIIAIFEINKGNHMEEKYQSNEMKRRDFLR
                     TGMMVAASALFIPFSGNKAFGALSASQVNQSIPAVTLNNGLSMPRLGFGTNTLNGDVA
                     VRSVADAITVGYRLIDTAHIYGNEEAVGMGIKKSGINRGELFVTSKLWVDFAGYENTK
                     KAFQTTLDKLGLEYLDLYLIHRPRGDYKGSWKAMEELYQAGKIKAIGVSNFNPDQLAD
                     LMANAKVKPAINQIETHVFFQEPVLYDELKKKNVQMEAWSPLAAGRNNIFSNPTLAAI
                     GKKYDKSIAQVCLRWHFQ"
BASE COUNT          916 a          631 c          639 g          902 t
ORIGIN      
        1 taaatagaaa taaaataaac acaatagaca cataggacac atagttttat tatactatgt
       61 gctctatgtg tctatgtgtt taaatattaa ttgttgaaaa tgtcaaaatt acaaaagtca
      121 gcccttattg ttggggcggt actgctgatc gatcaaatcc tcaagatatg gattaaaacc
      181 aacatggccc tgggcgacga gttctcggtc ataggaaatt ggtttgtcat ccattttgtt
      241 gaaaacaatg gcatggcctt tggcttcgaa ttcgggggcg attacggcaa aatattccta
      301 agcctgttcc gcgttttcgc agtgtttgga attggttatt atatcttgaa attggttaaa
      361 aaagacatac ccatgggctt tattgcctgt gtggccttaa tatttgcagg ggctatcggt
      421 aatatcatcg acagtgcttt ttacgggctg atcttctctg acagctacgg acaggttgcc
      481 acgctttttc caaaaggggg aggctacgcc acgttcctgc acggaagggt agtagatatg
      541 ttttattttc ccatcatttc aggcgttttt cctgattgga tgcccatcat aggaggcagt
      601 gactaccagt tctttcgtcc cgtgtttaat gtggctgatt cagccatctc ggtaggtatc
      661 tttgccatta tcttattcta ccgcaaggaa ttcagtgagc tcacttccaa agagcattcc
      721 catgagaagg aagagaccga agttgctaat gagcaggtta cagctcccga gaaggaaagc
      781 catgaaattt gatgatttta tttggcaata agcagcaaat tctgtaaact tgcactccga
      841 aaaaggggga gttcttatta ttaagtagta tatttacctg agaataaaat accacattag
      901 ataatttcag ggcctatagc tcagtcggtt agagcacctg actcataatc agggagtcac
      961 tggttcaagc ccagttgggc ccacttcaaa atcaaacact tacacatgaa cttgtgtagg
     1021 tgttttttgt ttgatgtcag gctgaagcaa ggatttggga gtcggtttca aataaaggta
     1081 gtaatttctt aaatccagga ccagatcaaa tttctccaat attccattgc ccaacaggcc
     1141 tgaaaaagga tacggccttt gtcgatctaa agagaaagat acataattgt tttgggttag
     1201 aataaatttg cctacttgaa cggtgtcact cttaaaggaa aaagcggagt taaatccatg
     1261 tagaagatga gctttcccaa aaaaagcgtt gtctgatttt ataccgtact tgaatatgat
     1321 gttgttacta aaacttatat caccattaca gccagtatct atggtcacta ctgctttaat
     1381 ttttttcccc tgaaccgata ccgcaacagg tattcctaaa aatccattct ctacttccat
     1441 ttttacagaa tcgtaacctg tcaaatccct ggtgccggat agttccctga tatattgttt
     1501 gctaaatgat atttcaatta ttttttgatc gaaaaactgc cacgggagta ttccccccgt
     1561 tcctctccat cgaaatagca tatcgttctt gtcaaaacaa tacgcgtcaa ccgagtcccc
     1621 gtaaatccgc tcaaatcctc caattcgtac ttccattgtt ttttctatct tacggaatcc
     1681 atttttatct tcttttttct caaaatcaga agtcaggctg tcggagaatg tcattttcaa
     1741 aaagcctgtt tccaggaaat accatagagg tactgaatca ttcaaagttc cgggaattaa
     1801 gatggccctt ttcaaattaa agtcgtattc aaatgacaca gcgccttcgg gaatactatc
     1861 aatatctgtc gctcttgtcg tttgtgatga agggctgttg caggacaaca ggatcaataa
     1921 aatgggggct aacagataaa gtttcatcgt acttgcaggt tattggtttt gatagtttga
     1981 acttattgaa aagacagccg agagcgttac attcaataag ttcattggct acaaagcatt
     2041 tctatgcaaa tcgttcaaat ataacataag tatttgtatt attgtatatg atatcaataa
     2101 attacttccg ctggtgggga ttgatctgtt gaaggatcgc cattgctgcc aactgaccac
     2161 ttcttcctgc cttggcctcc accactgttc caattcatcc gccaaaatgc aatcaaacac
     2221 tgacccaaag atcttcttca aaaccaggga aataattgct atatttgaaa taaacaaagg
     2281 gaatcatatg gaagaaaaat atcaatccaa cgaaatgaaa cgccgggatt ttctacgtac
     2341 cggtatgatg gttgcagctt ctgctctgtt tatacctttc agtggaaata aagcattcgg
     2401 tgctctttcc gcttcacagg taaatcaatc aattcctgcc gtcacgctca acaacggact
     2461 gtcaatgcca aggcttggtt ttggtaccaa caccttaaat ggcgatgtcg ctgtgcgcag
     2521 cgtggcggat gccattacag taggctatcg actgattgat acagcccata tttacggaaa
     2581 cgaagaggcc gtaggaatgg ggattaagaa aagtggcatc aacaggggag agctttttgt
     2641 aacttccaaa ctgtgggtcg acttcgcggg atatgaaaac acaaagaaag cttttcaaac
     2701 caccctggac aaacttgggc tggagtacct ggatttatat ctcatccaca ggccaagggg
     2761 ggattacaaa ggttcctgga aagcgatgga agaactctac caggccggta aaatcaaagc
     2821 cattggagtg agtaatttta atcccgatca gctggccgat ctgatggcta acgcgaaagt
     2881 caaacctgcc attaatcaaa tagaaacgca tgttttcttc caggaacctg tgttgtatga
     2941 tgaattaaag aaaaagaacg tgcaaatgga agcctggtct ccgttagccg caggcagaaa
     3001 taacattttc agcaatccta ccctggcggc cattggcaaa aaatacgata aaagcatcgc
     3061 ccaggtgtgc ttaagatggc actttcaa
//
LOCUS       DATDNM010000773         3109 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1269283, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000773 DATDNM010000000
VERSION     DATDNM010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1269283"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1428)
                     /locus_tag="VI413_12930"
     CDS             complement(<1..1428)
                     /locus_tag="VI413_12930"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6915572.1"
                     /translation="MNVFDYFFVDSKNLDKNFILGVAEKASFKQIYDDSLKLASHLRK
                     MYGEDNKIILLSQNSLFFITAYLGIIKSGNICVPLNPTIEQDNLDYIVGLIDCKLGFI
                     SKTIRSILNISSTPRISESDLNDILRTQEIDVDISANGFDENRLAEIIFTSGSTGVPK
                     GVMLSHLNLRTNTNSIIEYLRLSQDDIIEVVLPFFYCYGLSLLHTHLKVGGSVVLNNN
                     FVLLGSVIDNLIKYKCTGFAGVPSHYQILLKKSQIFTKTVFPDLRYVTQAGGKLHNVF
                     IEEFIETFPEIKFYVMYGQTEATARLSFLPPEFLKSKMGSIGKGIPGVTLKVLNEQNK
                     LVEVGEVGELVVKGDNVMSGYFKDPEGTNEVLKDGWLYTGDMARVDEDGFIYLMARKK
                     EILKVGGKRVSPKEIEEVILSVPEVLDCTIEGFDDNLLGEAIKATVVLTGSFDKLEME
                     DKILKRCREKLSLYKIPHLLEFTEKL"
     gene            complement(1534..2514)
                     /gene="nadE"
                     /locus_tag="VI413_12935"
     CDS             complement(1534..2514)
                     /gene="nadE"
                     /locus_tag="VI413_12935"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF002048.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HEY6915573.1"
                     /translation="MKTNRKPFSTDILRIDDLESMCNGIVQKLREDVIHQLNRRGGIV
                     GISGGIDSSVTLALSARAFGAENVLGVMMPEADSSPESEAFARKLAAKFGVSTIVEDM
                     TNALKGFKCYERRDEAIARVIPEFDPAVDKAKIVIKQNIGQNIPPIFSVTVVKPDGKE
                     LSKLLPAKEYLQIVASSNFKQRSRMSMLYYHAERLHYAVIGTPNKHEVEQGFFVKYGD
                     GGADIMPIGGLFKTQVYQLAEFLGVPQEIIDRTPTTDTYSAEQTQEEFFYQLPFKVMD
                     LIWYGWENEYDAAEVALSLGKSEEEIKNIYKNFERKRKTTEYLRKSPIFF"
     gene            complement(2533..>3109)
                     /locus_tag="VI413_12940"
     CDS             complement(2533..>3109)
                     /locus_tag="VI413_12940"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HEY6915574.1"
                     /translation="LEDKFKGVDLLSRAQWLEVSLFMSGYLLSSQGDRMAMANSVEGR
                     YPFLDYRVMEFCMKLPPDYKLHGLNEKFLLKKLMDGKLPSQIVERSKQPYRAPILKSF
                     ISENSPDYVDEMLTEDQLLSAGIFNPDKVKQLVARLKSNSQISEIDNMAITGILSTQI
                     LDNLFVKRAISPLSESDLLNCNIVVFGDYNT"
BASE COUNT          972 a          674 c          465 g          998 t
ORIGIN      
        1 caatttttca gtgaactcca acaagtgagg gattttgtac agtgatagtt tttcgcgaca
       61 tcgcttcaat attttatctt ccatttcaag tttatcaaac gatccggtaa gaacaactgt
      121 tgcttttatt gcttcgccta acagattatc atcaaatcct tcaatggtac aatcaaggac
      181 ttccggaacg gataatatca cctcctctat ttcctttggg ctaactcgct tcccacctac
      241 ttttaatatc tctttttttc gggccattaa atagataaaa ccatcctcat caacccgagc
      301 catatctccc gtataaagcc aaccatcttt tagcacctca tttgttccct cagggtcttt
      361 aaaataccct gacataacat tatcgccctt aacaaccaat tcgccaactt cgccaacttc
      421 caccagtttg ttttgctcgt ttagaacctt taatgttacc cccggaattc ccttaccgat
      481 tgatcccatt ttagatttca aaaattcagg gggcaaaaac gataatcggg cagttgcttc
      541 tgtttgccca tacatgacat aaaactttat ttccggaaat gtttcaataa actcttcgat
      601 aaaaacattg tgaagctttc cacctgcctg agttacgtac ctaagatccg ggaatactgt
      661 tttggtaaat atttgggatt ttttgagcaa tatctggtaa tgacttggaa cacccgcaaa
      721 accagtacat ttatatttta taagattatc aattacagat cctaacaaaa caaagttatt
      781 attcaaaaca acagaaccac caactttaag atgagtatga agaagagaca aaccataaca
      841 gtaaaaaaat ggcaaaacaa cttctataat atcgtcttgc gatagtcgga gatattcaat
      901 gatggagttt gtgtttgtac gaaggttcag atgactaagc attacccctt taggaactcc
      961 ggttgaacct gatgtaaaaa taatttcggc aagccggttt tcatcaaaac catttgccga
     1021 aatatcaaca tcaatttcct gagttcgtaa aatgtcattc agatcagact cactaattct
     1081 cggagtactt gagatattta gtatcgaacg aattgtttta gatataaaac ctaatttaca
     1141 atcgattaag cctacaatat aatcaagatt gtcttgttct attgttggat ttaaaggaac
     1201 acaaatgtta ccggacttaa taatccccaa ataggcagtt ataaagaaaa gtgaattctg
     1261 actaagcaaa ataattttat tatcctcgcc atacattttc cttaggtgac tggccaattt
     1321 tagactatca tcataaatct gtttaaatga agccttttct gcaacaccta aaataaagtt
     1381 cttgtccaga tttttcgagt caacgaaaaa ataatcaaac acattcatag cctcaaaata
     1441 tttaggttcg ttctcagcat atcaagtatc tttcacaaca gcgagtaaca cgtaactcaa
     1501 acaaagggaa acctgaaacc acaacttgta aatctaaaag aaaattggcg attttctcag
     1561 atattccgtt gtttttcttt ttctctcaaa atttttataa atgttcttaa tttcctcttc
     1621 cgattttccc agagacagag ctacttcagc cgcgtcatac tcattttccc aaccatacca
     1681 aattaaatcc attactttaa aaggcaattg atagaaaaat tcctcttggg tttgttctgc
     1741 actataggta tccgtcgtag gagttctgtc tataatttcc tgaggtacac ccaggaattc
     1801 ggccaactga tatacttgtg ttttaaacaa tccgccaata ggcattatat cagctccgcc
     1861 atctccatac ttaacaaaaa atccttgttc aacttcatgt ttattcggag ttccaataac
     1921 tgcataatga agtcgttctg catgataata taacattgac atcctggaac gttgcttaaa
     1981 attggaagaa gctacaattt gcagatactc tttagccgga agaagcttac tcaactcttt
     2041 tccgtcgggt ttaactacag tgactgaaaa aatcgggggg atattctgac ctatattctg
     2101 cttaataact attttggctt tatctacagc cggatcaaat tcaggaatta ccctggcaat
     2161 agcttcatca cgtcgctcgt aacatttgaa tcctttaaga gcattcgtca tatcttctac
     2221 aatagtgctc actccaaatt tagccgccaa ctttcttgca aatgcttcgc tttcggggct
     2281 tgaatctgct tctggcatca ttacccccaa cacgttctct gcaccaaatg cccgagctga
     2341 aagtgctaac gtaaccgatg aatcaatacc gccactaatc cctactattc ctcctcttct
     2401 atttaattga tgtattacat cttctctcaa tttttgaaca attccattgc acatcgattc
     2461 aagatcatca atccgcaaaa tatctgttga aaaaggcttt ctgttagttt tcatatttaa
     2521 agtatttatt tgttaggtat tataatcacc aaaaactact atattacagt ttagcaaatc
     2581 agattcagat aaaggcgata ttgccctttt tacaaaaaga ttatccagta tttgtgttga
     2641 taaaattccg gttatcgcca tattgtcaat ttcagatatt tggctgttcg attttagtcg
     2701 ggcaacaagc tgcttcactt tgtcaggatt aaaaattccg gcagaaagca actgatcttc
     2761 agtaagcatt tcatctacat aatcgggcga attttccgaa ataaaacttt ttaaaatagg
     2821 cgccctatat ggttgttttg acctttctac aatttgagac ggtaattttc catccattaa
     2881 ctttttcaaa agaaactttt catttaatcc atgtagcttg taatccggag gtaacttcat
     2941 gcaaaattcc attacccgat aatccagaaa cggatatcga ccctcaactg aattcgccat
     3001 cgccattctg tcgccttgcg acgacaacaa atatcccgac atgaaaaggc tcacttcaag
     3061 ccattgtgca cgggataaaa gatcaacgcc tttgaattta tcttctaac
//
LOCUS       DATDNM010000774         2784 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1695360, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000774 DATDNM010000000
VERSION     DATDNM010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1695360"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..978
                     /locus_tag="VI413_12945"
     CDS             22..978
                     /locus_tag="VI413_12945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEY6915575.1"
                     /translation="MEIGISFWLGFIAFVVVMLCLDLFVFHKQDKAMKVKEALLWSVF
                     WIGLAVLFNIGVYFLLGKVKALEFLTGYLIEESLSVDNLFVFIMIFGFFKIEQKFQHK
                     ILFWGIIGAIIMRAVFIFAGVALIERFAWVMYIFGAFLVYTGIKMLFDKEEDEYDPNK
                     NVLIRGFKKVFPITDDMSKPHFFVKKNKILYATPFFIALLVIEASDLIFAVDSIPAVL
                     SVSKDPFIVYTSNIFAILGLRALYFALSGIMDYFHYLKYALAGILTFIGIKMCVNEFC
                     SEFGYSFHIGNFLSLGVIVTFLATSIILSIAVKKKTEHKVAK"
     gene            complement(1076..1684)
                     /locus_tag="VI413_12950"
     CDS             complement(1076..1684)
                     /locus_tag="VI413_12950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008765039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6915576.1"
                     /translation="MNNELLKIAVAEPSVIIRSGLAVALKRIPGIRIQPMEIISIDSL
                     GNFLRLHKPDILIVNPSFWGYFDISKLKEENPELRWLALLSSAVDDSLLRAYDESISI
                     YDSVDQLKEKLEKLLDSPVEENSDDTNALSLREKEVIVSVVKGMTNKEIAEALFLSTH
                     TVITHRRNIARKLEIHSTAGLTIYAIVNKLVQIDEIKKDMLS"
     gene            complement(1681..2388)
                     /locus_tag="VI413_12955"
     CDS             complement(1681..2388)
                     /locus_tag="VI413_12955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016661546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY6915577.1"
                     /translation="MQKQHKFSAKDKMVDLINEDYSLLLVISRFGISLGFGDNTVMDV
                     CKANNIHCETFLAIVNFLSEGDFEVGNAYENIAPESVIGYLKNAHTYFVDFKLPAIRA
                     KLLQAVDSPEQILPYATILIKFYDEYVAEVGKHMEYENKVVFPYVLDLLSGKRNKKYS
                     ISVFEDRHNEIDSKLAELKNILIKYFPASGNNHLLTEVLFDILSCEKDLASHNQVEDY
                     LFVPAIEAIEQKNPEAQ"
BASE COUNT          810 a          540 c          530 g          904 t
ORIGIN      
        1 taaaatttta aaaataagta aatggaaatt ggtattagtt tttggctggg ttttatagct
       61 tttgttgtgg taatgctttg cctggatttg tttgtgtttc acaagcaaga caaagcaatg
      121 aaggtaaaag aagctctgtt gtggagtgta ttttggattg gactagctgt tctttttaat
      181 attggggtat attttctgtt gggaaaagta aaagccctgg aattcctgac cggctatctg
      241 attgaggaat cgttgagcgt agacaattta tttgtcttta tcatgatttt cgggttcttt
      301 aaaattgaac aaaaatttca gcacaaaatc cttttttggg gtattatcgg tgccattatc
      361 atgcgtgccg tatttatttt tgccggcgtg gctctgatcg aacgctttgc gtgggtaatg
      421 tacattttcg gcgcattctt ggtctatacg ggaataaaaa tgttattcga taaggaagaa
      481 gatgaatacg accccaacaa aaatgtactt atacgtggat tcaaaaaggt gtttcctata
      541 accgatgaca tgtcgaaacc gcatttcttt gttaagaaaa ataaaatcct ttacgccaca
      601 ccattcttca ttgcgttact ggttattgaa gcttcggatc tgatatttgc ggttgattct
      661 attccagctg ttctttcggt ttccaaagac ccatttattg tttatacatc caatattttt
      721 gccattctgg gtttacgtgc gttgtatttt gcactaagcg gcatcatgga ttatttccat
      781 tatctgaaat atgcactggc cggcatcctg acctttattg ggataaaaat gtgtgtgaat
      841 gaattctgca gcgagtttgg atattctttc catatcggca atttcctatc attgggcgtt
      901 attgttacct ttttggctac atcgataata ttgtcgatag ccgttaaaaa gaaaacagag
      961 cataaagttg caaaataaga caccacccta tcatataata acgccttcac ttcgcaatta
     1021 ctgctgggtg aaggcgttac tattttatgc agaaaaaatc ttatttctgg atttatcagc
     1081 taagcatatc tttctttatc tcatcaattt gcaccagttt attcacaata gcataaatgg
     1141 taagaccggc cgtactgtga atttccagtt tgcgggcaat gttgcgccgg tgcgtgataa
     1201 ccgtatgcgt cgaaagaaac aacgcttcgg caatttcctt gttagtcatg cctttaacca
     1261 cgctgacaat gacttctttt tcgcgaagac tcagcgcatt ggtgtcatct gaattttctt
     1321 ccacgggcga atcaagcagc ttttcaagtt tttcttttag ttgatccaca ctgtcgtaaa
     1381 tgcttatcga ttcgtcgtaa gcacgcaaca aactgtcatc aacagccgaa cttagcagcg
     1441 ccaaccagcg aagttcggga ttttcttcct tcagttttga aatatcaaaa tatccccaga
     1501 aagaaggatt gacaatcaga atatcgggtt tatgtagccg caggaagttt ccgagcgaat
     1561 cgatagaaat aatttccata ggctggatac gtatgcccgg aatccgtttc aaagccacag
     1621 ccagcccgct gcgaataatc accgaaggct ctgcaacagc tattttcaga agttcgttgt
     1681 tcattgggcc tccgggtttt tctgttcaat agcttcaatg gccggcacaa acaaataatc
     1741 ttccacctgg ttgtgcgaag ccagatcctt ctcgcacgac aggatatcaa acaatacttc
     1801 cgttagcaaa tgattgttgc ccgaagccgg gaagtatttg atcaggatat ttttcagctc
     1861 tgccagcttg gaatcaattt cgttgtggcg atcttcgaaa accgaaatgc tgtatttctt
     1921 gttccgctta cccgaaagta aatcaagcac atacggaaaa acaactttat tctcgtattc
     1981 catgtgtttg ccaacctcgg ctacatattc atcgtaaaat ttgatcaaaa tggtggcata
     2041 cggcagaatt tgctccggtg aatctactgc ctgcaatagt tttgcccgaa tagccggaag
     2101 cttaaaatca acaaaatatg tgtgtgcatt tttcagataa cctataaccg attcgggggc
     2161 aatattctca taagcatttc ctacttcaaa atctccttcc gacaggaaat tgactatggc
     2221 cagaaacgtc tcgcagtgga tattattggc cttgcaaaca tccatcacgg tattgtcgcc
     2281 aaacccgagc gagatgccaa aacgactgat aacgagtaat aaagaataat cttcattaat
     2341 cagatcaacc attttatctt ttgccgaaaa tttatgttgc ttttgcatac tgtggaattt
     2401 tatattcgtg ttaaatgaaa tactataaca ccaaaacagt tttaaatgtt tatttttaag
     2461 actaatcaat aaaaaatgcc ggaacaccaa tggccttaag tgctccggca aatcaaatag
     2521 atactaacta ctacaaacta aaatccgata aatttttctg atacaaagtt cggtgtttct
     2581 ttgtaaggat gcaatcccct gttttaggta tttttatttt gctttcaaat acattgtgtc
     2641 tcaatgaaat tagtattaat aaaattacaa acaatttaat tctttacgca ggtgcataac
     2701 atgacaatga aatcaacaat tgcattcagg caaaattgat ttagtaactg gtaaatcttt
     2761 agtaactgat tgactctgtt ttat
//
LOCUS       DATDNM010000775         3229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1482989, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000775 DATDNM010000000
VERSION     DATDNM010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1482989"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VI413_12960"
     CDS             complement(<1..324)
                     /locus_tag="VI413_12960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008772161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M20"
                     /protein_id="HEY6915578.1"
                     /translation="MNNSTKDYIFENKKRFFEELFSLIRIPSVSSHLHRQPEIQECAK
                     KWCEILLESGVDKAEIMATDGNPVVFATKFIDSSYPTIMVYGHYDVMPAEPLELWTSA
                     PFKPEI"
     gene            619..1227
                     /locus_tag="VI413_12965"
     CDS             619..1227
                     /locus_tag="VI413_12965"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY6915579.1"
                     /translation="MENQHEVIVSTASRLFEQFGIRSVSIDNVCAELHISKKTFYNYF
                     PQKEDLVDAVLAYQRAANLEKYGKLLKNKNAIDSLILIIKEIKKNVEHESLSMCYDLE
                     KYYPKINEKFELEKREGIRAGFELNLRQGIEEGYYRSDLDVELISFFHSIQIKNTFEQ
                     MNQDSKKYTKKRLIDFFIDLMIHLIANEKGLKYMEENYNKAE"
     gene            1415..2752
                     /locus_tag="VI413_12970"
     CDS             1415..2752
                     /locus_tag="VI413_12970"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY6915580.1"
                     /translation="MRQFSRTFVLAAALICVLPTAVIKAQDTLTVSLSKALEIAMSES
                     PTIKVANKEIERVDYSKKEKFAALFPNISAAGSYQRALKKQRVFFSIPGMPSNPDGFE
                     MGQDNTFNAGLSASMPIISPTLWASLEMSETDTKLALETARSSKLALVNQVTKAYYTL
                     LLTQDQYNVFKRSYQNTTENARIINNKFKQGTVSEFEWIRADVQVKNASANLVSAESA
                     VNMSKLQLKMLMGVDMFTGLKIEGSLSDFERNMYGDVLSIDTTSLKSNTDMNQFDLKS
                     KQLDHALKIQKAGWWPTLAASFNYAYMSMANDAVDLRWFPASTAAVQLSIPIFQGGAR
                     VYKEKQLKIQQSQLKDQRDNLRRSLEMQAISYLDNIKKAIEKIESNKEGLRQAEKAVA
                     ISKKMYEVGSSTYLDLSNSELAYIQAGLMYNQSIFDYLSAKSDLEKLLGKDSK"
     gene            2800..>3229
                     /locus_tag="VI413_12975"
     CDS             2800..>3229
                     /locus_tag="VI413_12975"
                     /inference="COORDINATES: protein motif:HMM:NF024923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HEY6915581.1"
                     /translation="MKKIKLGGMLLLALVIGLTSCNKSKKTETAVVVEAPNVRIHSVA
                     EREVEQIYELTASVQPDAKNSIAPSAPGRIRNILVEVGQHVSKGQKLVQMDVANLSNL
                     ETQIENVKRIYKRTQELFNVGGASQQDLDNAKLQLDVAQTN"
BASE COUNT         1091 a          460 c          664 g         1014 t
ORIGIN      
        1 tatttcgggt ttaaaggggg cggaagtcca gagttccagt ggttcggcag gcataacgtc
       61 gtaatgtccg tataccataa tagtcgggta ggaagaatcg ataaatttgg tggcaaaaac
      121 gaccggattg ccatctgttg ccataatctc agctttgtcg actccagatt ctaatagtat
      181 ttcgcaccat tttttagcgc attcctgaat ttcgggttga cgatgtagat gtgaacttac
      241 acttggaata cgaatcaggc taaataattc ttcgaaaaag cgctttttat tctcaaaaat
      301 ataatctttt gtactgttat tcatgtgaat ttgttattgt aaagttatta tttgatagaa
      361 aaacccaata aaaatacgaa atattttaat gaaatgtcgt tatttattca atagttgaac
      421 attttttgag ctgtttttgt tttgttgagg aaacttggaa actataaaac tctgatagtt
      481 tccatttgtt ttgacttatt gctttgttta ttaatagtgt aggtgatttt tttaattgca
      541 taatgaaaat gtattggact ttttgatggt agagccaata ttttatataa ttttgcaccg
      601 atttaattaa atatatacat ggaaaaccaa catgaagtaa tagtcagcac ggctagtcgt
      661 ttgtttgagc agttcggaat acgaagtgtt tctatcgaca atgtgtgtgc tgagttacac
      721 atttcaaaaa aaacctttta taactatttc cctcagaaag aagatctggt agatgctgtc
      781 ttggcttatc aacgtgctgc gaatttagaa aaatacggta aactccttaa aaataaaaat
      841 gcaattgatt cactaattct tatcattaaa gagataaaga aaaatgtgga gcatgagtcg
      901 ttgtcaatgt gttatgacct ggagaaatat tatccgaaaa ttaatgagaa atttgaactt
      961 gagaagagag agggaatcag ggctggattt gagctgaatt tacgtcaagg aattgaagag
     1021 ggctattacc ggagcgattt ggatgtggag ttgatttcat tttttcattc aattcagata
     1081 aaaaatacat tcgaacaaat gaatcaggat agtaagaaat acacaaaaaa acgattaatt
     1141 gattttttta ttgatttgat gattcatctt attgccaatg aaaagggatt aaaatacatg
     1201 gaagagaatt acaacaaggc agaataagaa ttgagtttat cgaataatga agcccaattt
     1261 atgcttttga taagtacttc aactaattaa aacagtcgtt cgtcgggaaa aaacaggatt
     1321 tcaacgattt tattttctca ggcctgttaa aatggaataa ttttgcatta taatgtaaat
     1381 gataaaatat taatttctaa ataatttaaa aattgtgaga cagtttagta gaacatttgt
     1441 attggcagct gctttgattt gcgtgttgcc tacggctgtg ataaaggcgc aagatacgtt
     1501 gaccgtatcc ttgtcgaaag cgctggaaat agcaatgagc gaaagcccga cgataaaagt
     1561 ggctaataaa gagattgaaa gggtcgatta ttctaaaaaa gaaaaatttg cggctttatt
     1621 tccaaatata tcagctgccg ggtcgtatca gcgtgctctt aaaaaacagc gtgtgttttt
     1681 ttctattccg ggaatgcctt ctaatccaga tggatttgaa atggggcagg ataatacatt
     1741 caatgcaggc ttgtcagcat caatgccgat tatatcacca acactttggg cgtctttgga
     1801 aatgtctgaa actgatacaa agttagcttt ggaaactgcc cgttcatcaa aattggcatt
     1861 ggttaatcaa gttacaaagg catattatac tcttttattg actcaggacc aatacaacgt
     1921 attcaaacgc agttatcaaa atacaactga aaatgcacgc attatcaata ataaatttaa
     1981 acagggaaca gtttcagaat ttgaatggat tcgtgcagat gttcaggtga agaatgctag
     2041 tgctaattta gtttcggccg aaagtgctgt gaatatgagt aaattgcaat tgaaaatgct
     2101 catgggagtg gacatgttta ctgggttgaa gattgaaggt agtttgtctg attttgagag
     2161 gaatatgtat ggggacgtat tatcaattga cactacaagt ctaaaatcga atacagacat
     2221 gaatcagttt gatttgaaat ctaaacaatt agaccatgca ttgaaaattc agaaagccgg
     2281 ctggtggcca acactggctg caagttttaa ttatgcttat atgtcgatgg caaatgatgc
     2341 tgttgatttg agatggtttc ctgcttctac tgctgcagtg cagttgtcaa ttccaatttt
     2401 tcagggagga gccagagtat ataaagaaaa gcaattgaaa attcaacaaa gccaattgaa
     2461 agaccagcgt gataatttgc ggagaagtct tgaaatgcag gcaatttctt atttggataa
     2521 tatcaaaaag gctattgaga aaatagaatc caacaaggaa gggttgcgtc aagcagaaaa
     2581 agcagttgct atttctaaga aaatgtatga agttggatca agcacttatc ttgatttgtc
     2641 aaattcggaa ttagcttata ttcaagcagg tttaatgtac aatcagtcta ttttcgatta
     2701 tttgtcggca aaatcggatt tagaaaaatt gttaggaaaa gattcaaaat agtttgtagt
     2761 ttataatgaa ataaatataa aaagtaaaat agtatttata tgaaaaagat taaattaggt
     2821 ggaatgctcc ttcttgcgct ggttatcggt ttgacttcgt gcaataaatc aaagaaaacc
     2881 gaaacggctg tagttgttga ggctccaaat gttcgaatac attcagttgc agaacgtgaa
     2941 gtagagcaga tttatgaatt gacagcttca gtacaaccgg atgcaaaaaa tagtattgct
     3001 ccatctgctc caggacgaat ccgtaatatc ctggttgaag ttggtcagca tgtttccaaa
     3061 ggtcagaaat tagtgcaaat ggatgtggct aacctttcga atctggaaac tcagattgaa
     3121 aatgtaaaac gtatttataa aagaacccag gaacttttta atgtcggtgg tgcatcgcaa
     3181 caggatttgg ataatgcaaa actccaactc gatgtggctc agactaatt
//
LOCUS       DATDNM010000776         3867 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1909507, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000776 DATDNM010000000
VERSION     DATDNM010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3867
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1909507"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      70..381
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            501..2537
                     /locus_tag="VI413_12980"
     CDS             501..2537
                     /locus_tag="VI413_12980"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEY6915582.1"
                     /translation="MFTKVILCPGAIRAFVFVNLFFSVTAKAAVEQKTDTVSPKKLNE
                     VVVNGHHFQSVRAALPVQVLSEKELGNLNASSIADVARHFAGVTVKDYGGIGGLKTVS
                     IRGFGALHTGVSYDGMMMSDVQSGQIDLSRFSVENIAEVTLSNGQPNNLLQPARFFAS
                     SGVLTFSTKMPEYNVNHTFTGNISAKAGSFGLFNPLIYICKNISPRWAISLSANGLTA
                     NGEYKFVSNLNREGENLVEKTRINSDVHSVRTELNSTYHFNTFEYIALKINQYNSERG
                     LPGADTYYISYATDRLLDKNYLAQFQYQNRQNCYFQYQFAGKFNKTSMLFTEESPNYP
                     AEINHTRTDNYAQNEYYLTSAYQIYFSEYFTVSGSFDWWYNNLLSHSNISFRQDAAPT
                     RHSGLANIAAKYTTNNLIISANILYTLTRETNQNRVTAPGRDKFSPTICVSYKPFNSK
                     EIRFRAFYKNIFRLPTFNDLYYHDFGYAKLLPETTNQFNVGITYYETAIPFFSSLECT
                     VDGYYNRVTDKISIVYGMPFSTVRNIGRVDIKGCDVSLKTSKKLSSKSKINISANYTY
                     QLAQDYTAGTDTYLDIIPYTPIHSGSASISFEQKNWEYGYNYLFSGKRYTGQNSNKQN
                     LLKPYSDHSLFVRYTYKKISLTAEALNLTNKNYEIVQFYPMPGRNYRFTLNYKF"
     gene            2566..3645
                     /locus_tag="VI413_12985"
     CDS             2566..3645
                     /locus_tag="VI413_12985"
                     /inference="COORDINATES: protein motif:HMM:NF028129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5074 domain-containing protein"
                     /protein_id="HEY6915583.1"
                     /translation="MKTSKIFASLFLTALAVPFLTSCDRMEEIVKIPEISTGVFVLNE
                     GKYKSNNASLTYYDFATGFASADLFLDKNNRGLGDTGQDIIKYGSNLYIAMYKSSLIE
                     VVNATTGMSIKSIPMVNGSNEPSSPRTLTAANGKVYIVLFDGHVTQLDTTSLTLGTTI
                     TVGANPDASVISNNKLYVANTGGMAAVKDSTISVINLSTFTEEKKITVNLNPQGIKAD
                     AYGDIYVVSNGDYTSIPGKFQRIEAGTDKVTDINVAVKDFEISGDNAYIYNFTYDENW
                     QATNKTIAVYDVKNEKLVKENIVATPIAKTPYCINIDPTTNDIYLGVTDYVSLGKMYC
                     FDKNGALKFTFTTGLNPSKVIFITK"
     gene            3739..>3867
                     /locus_tag="VI413_12990"
     CDS             3739..>3867
                     /locus_tag="VI413_12990"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014775870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEY6915584.1"
                     /translation="MEKKGYIHVYTGNGKGKTTAAMGLALRATGAGVDVDVSFFSHD"
BASE COUNT         1268 a          807 c          732 g         1060 t
ORIGIN      
        1 catgctgtga ataagtataa ttataacctg gaattgataa tttaattttt ttatccgaac
       61 taaatgcctt aattttgcac ctgctttggt tccgattgca cattcccgtg taacggatta
      121 aaagggaaac aggtgtaaat cctgtacagt cccgctgctg taagctccaa aagcaattga
      181 ctgttgcccc gataattatc gggatcacaa ttgacaatta cttttaaacg tattgaacaa
      241 cacttttgcc actgtttcag acacaggcga cagacaacag atgtcacaat ttattgtcaa
      301 ttgccaactg tcaattaaaa atgggaaggc gttcaaaaac gggagtaagt cagaagacct
      361 gccagacatt aattaatttt cagaagcttt cgaggaaaaa gcgacgaaac atcagcaaaa
      421 acaatcatca gttttgccat tgttaggtca ttttcgggag ctatttgaac ggtttattca
      481 tcgtcaaata gttaacaact gtgttcacta aggtcattct atgtccgggt gccatacgtg
      541 cattcgtatt tgtaaattta tttttttccg ttacggcgaa agcagccgtt gagcagaaaa
      601 cagatactgt aagtcctaaa aagctgaacg aagtagtggt gaacggccat cattttcaat
      661 cggtaagagc ggccttaccc gtacaggttc tatctgaaaa agaattaggc aaccttaatg
      721 catcgagcat agccgacgta gccagacact ttgccggagt caccgtgaaa gattatggag
      781 gcattggcgg attgaaaact gtttctattc gtggttttgg agcacttcac accggagtga
      841 gttacgacgg aatgatgatg agtgatgtgc aatcgggtca aattgacctg agccgatttt
      901 cggttgagaa cattgccgaa gtgacgcttt caaacggaca acccaacaat ttactgcaac
      961 cggcccgctt ttttgcttca tcgggcgtgc ttaccttttc aacaaaaatg cctgaataca
     1021 atgtaaacca tacatttaca ggcaacattt cagccaaagc gggctccttc ggcctgttta
     1081 atccgttgat ttatatctgt aaaaatattt ctccccgctg ggcaatttct ctttcagcaa
     1141 acggattgac tgcaaatgga gagtataaat ttgtttcaaa cctgaacaga gagggcgaaa
     1201 acctggttga aaaaaccaga atcaattcgg atgtccattc cgttcgtaca gagttaaatt
     1261 caacttatca cttcaacaca tttgaatata ttgcactgaa aatcaaccaa tataactccg
     1321 aaagaggctt acccggtgcg gatacttatt atatttcata cgccactgac agattattgg
     1381 ataaaaacta cttagctcag tttcagtatc aaaatcgcca aaactgctat ttccaatatc
     1441 aatttgcggg gaagttcaat aagacttcta tgctgtttac cgaagaaagc ccaaactacc
     1501 ctgccgaaat caaccacaca cgcactgata attacgctca aaacgagtat tacctgactt
     1561 cggcttatca aatctatttc agcgaatact tcacggtttc aggttctttt gattggtggt
     1621 acaataattt attatcgcat tcaaacatta gtttccgaca ggatgcggca ccgacacgcc
     1681 attcgggact cgccaatatt gcagccaaat atacgactaa caatctgatt attagcgcaa
     1741 acatattgta cacattgacc cgcgaaacaa accagaacag agtaaccgca cccggcagag
     1801 acaagttttc gccaactata tgtgtgtcat ataaaccatt caacagcaaa gaaattcggt
     1861 tcagggcatt ttacaagaat attttcaggc tgccaacttt caatgatttg tattaccacg
     1921 atttcggata tgccaagcta ctacctgaaa ctaccaatca gttcaacgtg ggaattacat
     1981 attacgaaac ggcaattcct ttcttctcaa gcctggaatg tacagttgat gggtattaca
     2041 accgtgtaac cgacaaaata agcattgtgt atggaatgcc tttttcaacc gttcgtaaca
     2101 ttggacgtgt ggatattaaa ggctgtgatg tgagtctgaa aacctcgaaa aagctgagca
     2161 gcaaaagcaa aatcaatata tcagcaaatt atacttatca actggctcag gactacacag
     2221 caggcacaga tacttatctg gatataattc cttatacacc aattcattca ggttcagcct
     2281 caatatcgtt cgaacaaaaa aattgggaat atgggtacaa ttacctgttt tcggggaaaa
     2341 gatacactgg tcagaactca aacaaacaaa atctgctaaa accctattca gaccatagtc
     2401 tgtttgttcg atacacttac aaaaaaatca gtctgacagc agaagccttg aacctgacaa
     2461 ataagaacta tgaaatagtg cagttctacc ccatgcccgg ccgaaactac cgttttaccc
     2521 tcaattataa attctaaaaa ataattcatt taaaattaaa cagttatgaa aacaagcaaa
     2581 atttttgcgt cactctttct cacagcactg gctgtaccgt tccttacttc ttgcgatcgc
     2641 atggaagaaa tagtaaaaat cccggaaatc agcaccggag tatttgtgct taacgaagga
     2701 aaatacaagt ccaataatgc cagtcttact tattatgact ttgcaaccgg ctttgcatca
     2761 gctgatttgt ttctggacaa aaacaaccgc ggattgggtg ataccggcca ggatatcatt
     2821 aaatatggtt ccaatttata cattgccatg tacaagtcaa gccttattga agtggtgaat
     2881 gctacaacag gtatgagtat caaatctatt ccaatggtaa atggatcgaa cgaaccaagc
     2941 tcaccacgaa cacttactgc ggctaatggc aaagtatata ttgtactgtt cgatggacat
     3001 gttacccaat tagatactac cagcctgact ttgggaacaa ccataactgt aggggcaaat
     3061 ccggatgcaa gtgttatttc aaacaataaa ttatatgttg ccaacacagg tggaatggcc
     3121 gctgtaaaag acagtaccat ttcagtaatc aatctcagca cctttacaga ggaaaagaag
     3181 attaccgtaa acctgaaccc acaaggtata aaagccgatg catacggtga tatttacgtt
     3241 gtttcaaacg gtgactacac gtcaattccg ggtaaattcc aacgtatcga agccggtaca
     3301 gataaagtta ccgacataaa tgttgcagtt aaggactttg aaatcagtgg tgacaatgcc
     3361 tacatttaca actttaccta cgatgagaac tggcaagcta caaacaaaac tattgctgta
     3421 tacgatgtaa aaaatgaaaa attagtaaag gaaaacatag tggctacacc gattgctaaa
     3481 actccatact gcataaatat tgaccctacc actaacgaca tttatcttgg agtaaccgat
     3541 tatgtttcac ttggaaaaat gtattgcttc gacaaaaacg gtgctttgaa atttactttc
     3601 acaaccgggt tgaatccaag caaagtgata tttattacta aataaaaata gttttgattg
     3661 tttaattttt taagagtgag aaacctgttg ccggaatgct gccatattcc ggtgacggtt
     3721 tttctaaaaa caaaaatcat ggaaaaaaaa ggatacatcc acgtctatac cggcaacggg
     3781 aaaggcaaaa ccacagccgc tatggggttg gctttacgcg ccaccggagc cggtgtagac
     3841 gtggatgtat cctttttctc ccatgat
//
LOCUS       DATDNM010000777         2753 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_414589, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000777 DATDNM010000000
VERSION     DATDNM010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414589"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(496..1275)
                     /locus_tag="VI413_12995"
     CDS             complement(496..1275)
                     /locus_tag="VI413_12995"
                     /inference="COORDINATES: protein motif:HMM:NF014336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1/P1 nuclease"
                     /protein_id="HEY6915585.1"
                     /translation="MMKLNKQILTLCLLAITFSVSAYDAVGHRIIADIAYQNLTEKAR
                     IQLDNILGKHGVVYEATWADEVRSDRKYDYSYQWHYQNLADSLSVADFKKLLDNPKAE
                     GEHLFFALDQMQARLKKDKSDVEALKFLIHFVGDLHQPMHLGRLTDLGGNRVDYNWFG
                     KKTNLHATWDGLLIENQKMSYSEYSRYLQDKFDPQKVEFKKYSVLQSVEAAYVVRTQI
                     YAYDYSDTNNYHYAYRFGDKLDEMLYRGGIQLANILNGIYK"
     gene            1571..1906
                     /locus_tag="VI413_13000"
     CDS             1571..1906
                     /locus_tag="VI413_13000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915586.1"
                     /translation="MQRMKFLSMLIIALGFGLLGTSCTQSDTDTATTLTLSATATDEA
                     QAAGISDDITNEVDNYVTTAAFTNTAAGVKSMFAGTEANGPTITVDKKDSVNFPKTII
                     IDYGTTGIT"
     gene            1958..2434
                     /locus_tag="VI413_13005"
     CDS             1958..2434
                     /locus_tag="VI413_13005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915587.1"
                     /translation="MWISNSTRTITFENFSVNDNAITGTKILTFKGLNADKNPYWTIS
                     VNDTTTRTDGTKVIWNSQRTRVKLNGNGTPYIYWDDNYSITGSSNGINAKGKAYTMVI
                     DSANPLLIGGGYRYFTKGTLTITSESKTAVIDYGDGTKDNKATVTVNGVSKEITLK"
BASE COUNT          861 a          547 c          546 g          799 t
ORIGIN      
        1 cgcctttggt acggacaaat acctggtcac tgcccttgcg ggtgtagaat gaaaggttgc
       61 ttatgctacc cgtaattacg tcgaattgtt ttacccgtgc catttcttag tagttagtga
      121 tccctgcccc ctaaagggga acttgaagac ctggtttata atatttctga agaagtgccc
      181 caactaaaga caatacagga ggcggaacta accttgttcc cctttagggg ttaggggctg
      241 tttacttcgt tattgtaagc tataacaaaa atagtaaatt aataaataat ctgcaaatac
      301 tataaatata atccatacta attagtatag gttatatatg gattatatac ggattgaata
      361 tgggttgtat acaggttatt gaatgtgatg atacgaagcg agagcggcac agcataaaag
      421 attagtagta aaaacacaaa agaccgcttg ttataaagta taacaagcgg tcttttactg
      481 tgagtaagaa aagtcttatt tgtatattcc gttcaggata ttggccaact ggattcctcc
      541 acgataaagc atttcgtcca gtttatcacc aaagcgatag gcgtaatggt agttgttggt
      601 gtcggaataa tcgtaggcgt aaatttgtgt acggaccaca taggcagctt ctaccgattg
      661 cagcacgctg tactttttaa attccacttt ttgagggtcg aacttatcct gcaggtagcg
      721 gctgtattcg gaatatgaca ttttctgatt ttcaatcaac agtccatccc aggttgcatg
      781 aaggttggtc tttttgccaa accaattgta atccacgcgg tttccgccca aatcggtcaa
      841 tcgtcccagg tgcatgggtt ggtgcaaatc gcccacaaaa tgaatgagga atttcagagc
      901 ttccacatca cttttgtctt tcttcaggcg ggcctgcatt tggtcaaggg caaaaaacaa
      961 atgttctcct tcggctttcg gattgtcaag taatttcttg aaatcagcaa ctgaaaggct
     1021 atctgccagg ttttggtaat gccattgata gctgtaatca tattttctgt cgcttcgcac
     1081 ctcatctgcc caggtagctt cgtaaactac gccgtgtttg cccaggatat tatccagctg
     1141 gatgcgtgct ttttctgtca gattctgata agcaatatca gctataatac gatggccgac
     1201 agcatcgtag gccgaaacag aaaacgttat tgctaataag cacagggtga gaatttgctt
     1261 gtttagtttc atcattataa ttttttatga atagtaccgt ttttataaaa cgtgacaaag
     1321 gtagaatatt tattcaaaaa caagatgaaa atataagcct gcgaaagatt ttcatacgat
     1381 aataacttat ttttaaaggt cgtatggaac tcgcatgtca gattatcagt attttttgtg
     1441 aatctccgta ttagctaacg ctgaccgttg gttcatgctc gtttctgcat attaaaccaa
     1501 taaggttaat ttgcgtcaaa gcattaaaca gacaataatt ttttagaatt aatcattaag
     1561 actaactttt atgcaaagaa tgaaatttct gtccatgctt atcatagcat tgggattcgg
     1621 attgttggga acatcatgta cacaaagcga tactgatacc gcaacaacac tcaccttaag
     1681 cgccactgcc accgacgagg cacaagctgc cggcattagc gacgatatta caaacgaagt
     1741 ggacaactat gtgacaacgg ctgcatttac aaatacagcc gcgggcgtaa agtcaatgtt
     1801 tgcaggcact gaggctaacg gaccaaccat tacggttgac aaaaaagatt ccgttaattt
     1861 ccccaaaaca atcattattg attatggaac tacgggtata acctgaaagc gaaacaatac
     1921 gcttaaagga aaaatcattg tggtagtatc aaacaaaatg tggatttcaa attcgacccg
     1981 caccattact ttcgagaatt tctcggtaaa cgacaatgcc attaccggta caaaaattct
     2041 tacattcaaa gggttgaatg cagataaaaa tccctattgg accatcagcg taaatgacac
     2101 taccacccgc accgatggaa caaaagttat ctggaattcg cagcgcaccc gtgtaaaact
     2161 gaatggcaac ggaacacctt atatctactg ggatgacaat tattcaatca caggctcttc
     2221 caacggcatc aatgcaaaag gaaaagcgta tacaatggtg attgacagtg ccaatccatt
     2281 gctcattggt ggtggataca ggtattttac caaaggcact ttgactatta cttccgaatc
     2341 gaaaacagca gtgattgatt acggcgatgg aacaaaagac aacaaagcaa cggtaactgt
     2401 aaacggcgta agcaaagaaa ttaccctgaa ataataattc acagttaaat caataatgag
     2461 taacggcttt actgcaatcg cattagagcc gttcttattt taattatcaa ttctttttaa
     2521 tatatttgca tggtatttga tgagattaca cggtttgatt tttgtcaaca gaactttaga
     2581 acttatgaag aatacactat tatttgccct gacttttctc cctcttttag ctgccgcaca
     2641 attggcagat ccctattcac ccgatcacaa aaaaccggct aaaattaaag gcatgaagct
     2701 tgtcttcagc gaggagttta attataccgg taagcccgac tccaccgtat gga
//
LOCUS       DATDNM010000778         2485 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_948414, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000778 DATDNM010000000
VERSION     DATDNM010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_948414"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..995)
                     /gene="purT"
                     /locus_tag="VI413_13010"
     CDS             complement(<1..995)
                     /gene="purT"
                     /locus_tag="VI413_13010"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009016928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HEY6915588.1"
                     /translation="MTKIGTTLSAVGKKAILCGSGELGKEVAIELQRYGIEVVALDKY
                     ANAPAMQVAHHSHVFSMLDGQKLREVVEAEKPDYIIPEIEAIATDTLVELEKEGFNVI
                     PTAKATFLTMNREGIRRLAAEDLQIATSPYRFASSKEEFEAAVDEIGIPCVVKPIMSS
                     SGHGQSVIKTAADIEQSWKIAQEGGRAGAGRVIVEAFVKFDYEITLLTVRHSAGTTFL
                     NPIGHYQEGGDYRESWQPQPMTESALEKAQHIAKLVTDSLGGYGIFGVELFVCGNDVL
                     FSEVSPRPHDTGMVTMISQDLSQFALHARAILGLPVPFVRFYRPSASKAVVVEGD"
     gene            complement(995..2041)
                     /locus_tag="VI413_13015"
     CDS             complement(995..2041)
                     /locus_tag="VI413_13015"
                     /inference="COORDINATES: protein motif:HMM:NF014325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HEY6915589.1"
                     /translation="MKKRTTIRSLIFKELFVPFVALFSITIIGFFGYILIEGLSPLKS
                     LYLLVITFATIGFGDIVPVTNMGRAFTIFVVISGFTIGLYAVGKISAFFVEGELSKLL
                     KQRKMSKTLESMKDHYIVCGYGKTGKHVLDELLQKGLEVVMIESNAERNEKLKELYDK
                     KFIHLDADATDDQVLLHAGITRAKFLISVLSTDAENLFVTLSAKDLNKDIKVITRVAE
                     GNSPDKFKRAGADFIVSPIEIATDRIISIATTSTDFFSFVEFAGGKEELKDYKFGLVE
                     IKIGSDLINKTYRDANIPQRTNLVVIGYYSSTNELQVNPTADNLIQLGDRLLVFGNDD
                     QITNLKKIAKHNKN"
     gene            complement(2114..>2485)
                     /locus_tag="VI413_13020"
     CDS             complement(2114..>2485)
                     /locus_tag="VI413_13020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY6915590.1"
                     /translation="EEELEKAQFAAAFGRFCNSEVKMLLANDYGSKAATNAAKMKDLF
                     DKFDFKYTLEKATKDSFKVEAESIQVAVKEHAGMVIVSASRDYGLDDILFGPKEYHVV
                     KKSDVPVLLVNPRGDLYALCD"
BASE COUNT          746 a          565 c          398 g          776 t
ORIGIN      
        1 ctatcacctt ctaccactac agccttggat gctgaaggac ggtaaaaacg aacgaaagga
       61 accggcaagc ccagaatagc acgcgcatgc aatgcaaact gcgacaaatc ctgagaaatc
      121 atggtcacca tgcctgtatc atgcggacgt ggcgacactt cgctgaataa tacatcattt
      181 ccacaaacga ataattctac tccaaaaata ccgtaacctc ccaacgaatc ggtaaccagt
      241 tttgcaatat gctgcgcttt ctctaatgca gattcagtca ttggttgtgg ttgccatgat
      301 tcccgataat cgccaccttc ctggtaatgg ccaatcggat tcaggaatgt tgttccggca
      361 ctatgtcgaa cggtaagcaa cgtaatctca taatcgaatt ttacaaaagc ctctacaatt
      421 acacgacctg ctcctgccct tccgccttcc tgagctattt tccatgattg ctcaatatca
      481 gcagcagttt ttataacgct ttgaccatgg cctgacgaac tcatgattgg ttttactacg
      541 catggaatac caatttcatc tacagctgct tcaaattctt ctttgctgga agcaaaacga
      601 taaggtgaag ttgctatttg caaatcttcg gctgccagcc tgcggattcc ttcacgattc
      661 atggtcagga aagttgcttt tgcagttgga attacattaa agccttcttt ctctaattct
      721 accaatgtat cagtagctat cgcttcaatt tccggaataa tataatcagg tttttctgct
      781 tctactactt cacgtaactt ctgcccgtcg agcatagaaa acacatgcga atggtgcgca
      841 acttgcatag ccggcgcatt ggcatattta tccagtgcta ccacttcaat accataacgt
      901 tgcaactcga tggcaacttc cttacctaat tctcccgatc cgcacagaat ggctttttta
      961 ccaactgctg agagtgttgt accaattttt gtcattaatt cttattatgt ttagcaattt
     1021 ttttgaggtt agtaatctgg tcgtcgtttc caaacaccag taatcggtca cctaattgaa
     1081 ttaggttatc tgcagtcggg ttcacctgca attcatttgt tgaagaatag tatccgatga
     1141 ccaccaaatt agttcgttgc gggatattgg catctcgata agtcttgttt atcaaatcgc
     1201 ttccaatttt aatttcaacg agtccgaatt tataatcttt caactcttct ttaccaccag
     1261 caaattccac aaaactaaaa aaatcagtac tggtagtggc aatggaaata atccggtcgg
     1321 tagcaatttc gataggagac acaataaaat ccgctccggc tcttttaaat ttatccggtg
     1381 aattaccttc agcaacacgg gtgattactt ttatatcttt atttaaatcc ttcgcactca
     1441 atgttacaaa taaattttct gcatcggttg aaagtacaga gattaagaat ttagccctcg
     1501 taattcccgc atgaagcaga acctgatcat ctgttgcatc ggcatccaga tgaataaatt
     1561 tcttatcata aagttccttc aacttctcat tcctttcggc attgctttca atcatcacca
     1621 cttccaggcc tttttgcaat aattcatcca acacatgctt tcctgttttt ccatagccac
     1681 aaactatgta atggtctttc attgactcta atgttttgct catttttcgt tgctttaata
     1741 gtttagacaa ttcaccttcg acaaaaaatg ctgaaatttt accaactgca tataaaccaa
     1801 tggtaaatcc ggaaataact acaaaaatag taaatgcccg ccccatattg gtaaccggaa
     1861 ctatatcacc aaaaccaatt gtagcaaagg ttattactag caaataaagt gatttgagcg
     1921 ggcttaaacc ttcaataaga atatatccaa aaaaaccaat aatagtaatg gagaatagtg
     1981 ccacaaacgg gacaaacaat tctttgaata ttaatgatct tatagttgtt ctttttttca
     2041 tttcagattt agtttaaact cagatcagtc aagatatttt tcagttgtaa aaataaatat
     2101 tttctacaaa taatcaatca cacaaagcat ataaatcccc acgcggatta accaataaaa
     2161 ccgggacatc tgattttttc acaacatgat actctttggg tccaaatagt atatcatcca
     2221 gtccataatc acgcgaagca gaaacgataa ccattccggc atgctctttt acagccactt
     2281 gtatggattc agcctctact ttaaaactgt ctttggtagc tttttcaagt gtatatttaa
     2341 aatcgaattt atcaaacaaa tctttcattt tcgctgcatt ggtagccgct ttggatccat
     2401 aatcattagc aagcaacatt tttacctccg aattacaaaa ccgtccgaaa gccgcagcaa
     2461 actgtgcttt ttccaattct tcttc
//
LOCUS       DATDNM010000779         3554 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1055347, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000779 DATDNM010000000
VERSION     DATDNM010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3554
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1055347"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1128
                     /locus_tag="VI413_13025"
     CDS             <1..1128
                     /locus_tag="VI413_13025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008862622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6915591.1"
                     /translation="IASKELIDVAQKNGYKLYYEYNADGTVDPFMSYCNMSFVEFYQG
                     NKEILFARPQVDYSFMEGHAAPRGSQGQGGLGVTQSLVDAFFMSNGLSPIVGYDVARK
                     PIINPASGYKEKGFSSGPDRRKTKWIEGVADASTSQEINTIAPTGTFNMYVNREPRFY
                     VSVYFNGAYYRESNRNLDFYRGGVDGGPFAGSVWDAPQNGYLLRKRIHPRTNIMNGSR
                     PYRPGILYRLAEAYLNYAEALNECDPSQKEEILKYVNLVRERAGIPTYGPGADQIPAP
                     ANQNDMRDAIRRERRVEFNCEYAIRYDDIRRWKQMDLLKGDFDGMNFDGTKKSDNEND
                     PQAYFIRKVYITRAFSDKNYWIPIHQNQLDKNPNLRQMPKW"
     gene            1170..2276
                     /locus_tag="VI413_13030"
     CDS             1170..2276
                     /locus_tag="VI413_13030"
                     /inference="COORDINATES: protein motif:HMM:NF025650.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:2001070 - starch binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusF/SusE family outer membrane protein"
                     /protein_id="HEY6915592.1"
                     /translation="MKTIYNLLLTLIVFFFMGCQEEKEIIPERNQLKISTTDELVVLD
                     QSKLDQDVLTFTWTAAQPIGPEYTFTYSLRLDIADNHFETAIDPIIVADGVYSYSFKT
                     GELYDYIVEKWHGVAGQVTQIEARIVAKVNGPKFIYPEIATTKVSVQTYLPSSEPLYI
                     LGTATDAGMDPGKALLMNEISNGKIYSWKGQLKTGNFKFITQTGSLLPSLNRGEQDSL
                     LVVRNNDTVPDNYFTVNQSGLYYIYLSKKTMKINISLLKYQMVYLVGNATSIEWNIDK
                     AIEMSPDPLTPSIFTVQTTLKEGELKMPTEKSWSSPTFRPMEANGSIDKTDTQVSSAA
                     DGAADLKWKVTAAQAGTYKITLDTEKNKITFVKI"
     gene            2273..3508
                     /locus_tag="VI413_13035"
     CDS             2273..3508
                     /locus_tag="VI413_13035"
                     /inference="COORDINATES: protein motif:HMM:NF015616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 76 protein"
                     /protein_id="HEY6915593.1"
                     /translation="MMFKKYLCIAIWAAAICSCSTNNDPDIIPIKPTEKQPLDTAYIK
                     KAEATFDKMFELYWYDRMKIMYDKYPNTLKTNTNQTSYPYEEGYAFVWGYGSVLSAYS
                     AIFQRSPDFSNFEKKHKSKIIDGLEIYYNTSKKPAAYGSFPNDWDDRYYDDNIWLGID
                     LVELYDRTKDTWYLDKAKIIWKFILSGKDDVLGGGIYWKESDPTTKNTCSNAPAAVLG
                     LKLYKSTKDEAYLTTAKEIYEWTKNNLQDPSDYLYWDSMKSNRTIEKWKFAYNTGQMI
                     QAAALLYNITNNAKYLTEAKLAAESAYNYFFEKYTLPTGETITVLKKGSLWFNAVMFR
                     GFAELNKIEKNMKYITAFKQSLDYAWLYARDPQTGLFNSDFSGRTTDEKKDLLTQGGI
                     IEMYARMATIQYRKSINII"
BASE COUNT         1162 a          683 c          774 g          935 t
ORIGIN      
        1 attgccagta aggaattaat agatgtagcc cagaaaaatg ggtacaaact ttactacgaa
       61 tataacgccg atggaacggt tgatccattt atgtcctatt gcaatatgag ttttgtggaa
      121 ttctatcagg gcaataaaga gatattattt gcacgtccgc aagttgacta tagttttatg
      181 gaaggacatg cggccccacg cggttcgcag ggtcagggtg gattgggagt tacccaaagc
      241 ctggtagatg ctttctttat gagcaatgga ttatcgccga tagttggata tgatgttgcc
      301 cgtaaaccga ttattaatcc cgcatcagga tataaagaaa aagggttttc atctggtcct
      361 gaccggagaa agacgaaatg gattgaaggc gtggctgatg ccagtacttc acaggaaata
      421 aacacaatag ctccgacagg aacctttaac atgtatgtga acagagaacc ccgtttttat
      481 gtgtctgttt attttaatgg tgcctattat cgggaatcaa acagaaatct tgatttctac
      541 agaggtgggg ttgatggtgg tccttttgca ggttcagttt gggatgctcc tcagaatgga
      601 tatcttttaa gaaagcggat acacccgaga accaatatta tgaatggaag ccgcccctac
      661 cgtccgggaa tactttaccg tttggctgaa gcttatctga actacgccga agccctgaat
      721 gaatgtgatc cgtcacagaa agaggagatt ttgaaatacg tgaatcttgt cagagaacgg
      781 gcgggtatac ctacttatgg tcccggagct gatcagatcc cggcaccagc caatcagaac
      841 gatatgcgcg atgccatcag acgcgaacgc cgggttgagt ttaactgcga gtacgcaatt
      901 cgctacgacg atatccgcag atggaaacaa atggatttgc tgaaaggtga tttcgacggg
      961 atgaatttcg atggtaccaa gaaaagcgat aacgaaaatg acccgcaggc ctactttatc
     1021 cgcaaggtat acataacccg tgcattcagt gataaaaatt actggatacc tattcatcaa
     1081 aaccaattgg ataaaaatcc gaacctgaga caaatgccta agtggtaatt aatttccggt
     1141 cataaaaaac atataaacta aatatcagaa tgaaaacaat atataatcta ttactaactc
     1201 ttattgtatt ctttttcatg ggttgccagg aagaaaaaga aataattccg gagcgtaacc
     1261 agctgaaaat atcaacaaca gatgaactgg tggtgctgga tcaaagcaag ctcgatcagg
     1321 acgttttaac ttttacctgg actgccgctc agcctatagg acctgaatat acgtttacat
     1381 atagcctcag gctggatata gcagataatc attttgaaac ggctattgat cctattatag
     1441 ttgcagacgg agtttattcc tatagtttca aaaccggaga gctctacgac tacatcgttg
     1501 aaaaatggca tggagtagcc gggcaggtaa cgcaaattga agcacgcatt gttgccaagg
     1561 tgaatggtcc taagttcatt tatcctgaaa tagctacaac caaagtttct gttcagactt
     1621 atcttccgtc atctgagccg ctttatatac tcggaactgc aactgatgca ggtatggatc
     1681 cgggcaaagc gttgcttatg aatgaaatat ccaacggaaa aatatattca tggaaaggcc
     1741 agttgaaaac tggtaacttt aaattcatta cccagaccgg atctttgctg ccttcgctga
     1801 accgtggtga gcaggatagc ttattggttg tgagaaacaa cgataccgta ccggataatt
     1861 attttactgt aaatcaatcc ggtttgtatt acatttatct ttctaaaaaa accatgaaga
     1921 taaacataag cctgttgaag taccaaatgg tttatctggt gggtaatgcc acaagcattg
     1981 aatggaatat cgataaggcc attgagatga gtccggatcc gctgactcca tccattttta
     2041 cggtgcaaac aaccctgaaa gaaggcgaat taaaaatgcc aaccgaaaaa tcatggagtt
     2101 cgcctacatt ccgaccgatg gaagccaatg gttccattga taaaaccgac actcaggttt
     2161 catcagcggc tgatggggca gctgacttga aatggaaagt aacggcagct caggccggta
     2221 cttacaaaat aacactggat acggaaaaaa ataagatcac ctttgtaaaa atatgatgtt
     2281 caaaaaatat ctctgcatcg caatatgggc agctgcaatt tgcagctgct ctaccaacaa
     2341 cgatcctgac ataataccga taaagcctac tgaaaagcaa ccgcttgaca cggcctatat
     2401 caaaaaagca gaagctacat tcgataaaat gtttgaactg tattggtacg acaggatgaa
     2461 aataatgtat gacaaatatc ctaatacatt aaaaaccaac actaatcaaa ccagttatcc
     2521 gtatgaagaa gggtatgcat ttgtgtgggg atatggctcg gttttgtcgg cttacagtgc
     2581 tatttttcag cgtagtccgg atttcagcaa ttttgagaaa aaacataaga gcaaaatcat
     2641 tgacggactg gaaatttatt acaataccag taaaaaacct gcggcgtatg gttcctttcc
     2701 aaacgattgg gatgaccgct attacgatga taatatctgg ctcggtattg atttggttga
     2761 actttacgac aggacaaaag atacctggta cctcgacaaa gcaaagatta tctggaaatt
     2821 tatcctgtca ggcaaagatg atgtgttggg tggaggtatt tactggaagg aaagtgaccc
     2881 aacgactaaa aatacctgtt cgaatgcacc tgcagcggta ttgggattga agctttataa
     2941 atcaacgaaa gatgaagcat acctgacaac tgccaaagaa atatacgagt ggactaaaaa
     3001 taacctgcag gatccgtctg attatctgta ttgggattcg atgaaatcca acagaacaat
     3061 tgaaaaatgg aagtttgctt acaatacggg ccaaatgatt caggcagcgg cacttttgta
     3121 taacataacc aataacgcga aatacctgac tgaagctaaa cttgcggctg aatcggctta
     3181 caattatttc ttcgaaaagt ataccttacc tacgggagaa acaattacag tgctgaaaaa
     3241 aggaagtctt tggtttaatg ccgttatgtt tcgcggattt gctgaactga ataagattga
     3301 aaaaaatatg aaatacatca ccgcattcaa acagtcgctt gattatgcct ggctctatgc
     3361 gagagatcct cagaccggat tgttcaattc tgatttcagc gggcgaacaa cggacgagaa
     3421 aaaagatctc ctgacccagg gaggaattat cgaaatgtat gcgcgaatgg ctaccattca
     3481 atacagaaaa tcaattaata tcatatgaac atcagaaaac tatcattatc aatactggct
     3541 tttttgtgta tagc
//
LOCUS       DATDNM010000780         2579 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1270195, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000780 DATDNM010000000
VERSION     DATDNM010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1270195"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..1347)
                     /locus_tag="VI413_13040"
     CDS             complement(25..1347)
                     /locus_tag="VI413_13040"
                     /inference="COORDINATES: protein motif:HMM:TIGR00765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEY6915594.1"
                     /translation="MSKLIDFLTRIHNFVLNDIWRITEHELSRTRRICYRLVKIIYLA
                     IRGFIAEKLNIRASALTYSILFAIIPLFALIIAIGKGFGVEKMIEDSLQGTFIGQSNM
                     TPTVMGFVQRYLETTQRGLFIGIGIAILFWSVMNFFMQVESAFNSIWQVKKLRSPISQ
                     FTTYFSSILIIPLLIVFSSGLSIYVSSAVSQTYIYQVLSPVLRFGVKFIPYFINWIVF
                     TILYIAIPNTRVQFKNALVAGIIAGSAFQMFQMLYINGQVYLSRFNVVYGSFAAIPLL
                     LLWIQISCLIVLLGAEISYVSQNIQNFEYESDAKNISTRYKNFLTLFITHIIVKQFEN
                     QLPPLSSEKIASNYKLPIRIVNELITKLVDVSILIEISSDNSKNKTYQTALDINQLTV
                     NLLFTKLEKHGSEMFLSNKNEMLDLFWHKTLEIKQSEAQNTQLLIKDI"
     gene            complement(1387..1746)
                     /gene="rnpB"
                     /locus_tag="VI413_13045"
     ncRNA           complement(1387..1746)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VI413_13045"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            1925..>2579
                     /locus_tag="VI413_13050"
     CDS             1925..>2579
                     /locus_tag="VI413_13050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6915595.1"
                     /translation="MSNLGIKKGDKVVIIGGGFAGLQLAKTLMKADLKVILVDKQNHH
                     QFQPLFYQVASGRLEPSSISFPFRKIFQKSKNVDFRMADITKIYPNEKIIMTAYDRSI
                     TYDHLIIATGCKTNFFGNKEMSENAFSMKTTQESIDIRNKILFSFEKEIFARPEDKQA
                     WMNIVIVGGGPTGVELSGAFAELKKDVLPKDYHNIDFSKFNIILLEGSKYTLNNMSEE
                     "
BASE COUNT          837 a          453 c          480 g          809 t
ORIGIN      
        1 attcagttgg aagcggcttt ttctttatat atcttttatc agaagttgag tattttgtgc
       61 ttccgactgc tttatttcga gggttttatg ccagaataaa tccagcattt catttttatt
      121 acttaaaaac atttctgaac catgtttctc aagctttgta aaaagcaagt ttacagttag
      181 ttggttaata tcaagtgccg tttggtatgt tttgtttttt gaattgtcag aactaatttc
      241 aatcaatatt gaaacgtcaa cgagctttgt aattagttca tttacaattc gtataggcaa
      301 tttataattt gaagcaattt tttcagatga aagtggtggc aattggttct cgaattgttt
      361 gacaattata tgagttataa acaacgtcag aaagttttta taacgtgtgc taatattttt
      421 tgcgtcactc tcgtattcaa agttctgaat gttttgtgaa acatacgaaa tttcggcacc
      481 aagcagcact ataaggcacg atatctgaat ccacagcaaa agcaatggta tcgctgcaaa
      541 gctaccgtaa accacattaa aacgcgacaa atatacttgc ccattgatat acagcatttg
      601 aaacatttga aatgcgctac cggcaattat tccggctacc aaagcatttt taaactgaac
      661 ccgtgtattc ggaattgcaa tatataaaat tgtaaataca atccagttga taaaataagg
      721 tataaacttg acaccaaatc ttaataccgg gctaagaacc tgataaatat atgtttgtga
      781 tacagccgag ctaacataaa tggatagacc gcttgagaaa acaattaata atggaataat
      841 caggatggat gaaaagtaag tagtaaactg gctaatcgga gaacgtaatt tttttacctg
      901 ccagatagag ttgaaagcac tttctacctg catgaagaaa ttcattacag accagaataa
      961 tatagcaatg ccaattccga tgaagagtcc acgttgtgta gtttcgagat atcgctgtac
     1021 aaatcccatg acagttggcg tcatattcga ttgcccgata aaagtgccct gaagtgaatc
     1081 ttcaatcatt ttttccacac caaagccttt tccaatggca atgatgagtg caaataatgg
     1141 tattattgca aataaaatag agtaggtgag cgccgaagcc ctgatattta atttttcagc
     1201 aataaaaccc ctgatagcca gatagattat ttttactaac cggtaacata tacgccgggt
     1261 gcgtgataac tcatgctcgg taattcgcca aatgtcgttc agaacaaaat tatggattct
     1321 ggttaagaaa tcaattagtt tcgacataat gcaggggtaa tatttgagaa ataaggattt
     1381 tataaaaaaa atagcaggtc tgtaagccgg gttctgtgct ctgcttgcgc aaagtgtctg
     1441 tcatttatct cgaacaaatg tcaccatttg ccttaagcga tctacccccc gacatcgggc
     1501 gagcaaccct acatgcgtcg gtatacgtga tcttgcaacc cataagacgt acggcatctc
     1561 gtgttaccac gaaacccggt gagctcttac ctcacctttt cacccttact ccgacgaatc
     1621 ggagcggttt ttctctgtta cgctactctg ctctcacaaa cagcttcccg ttaggaaata
     1681 tggcgctctg cgttgcccgg actttcctct gttccgagtg gaaacagcga caaaccgacc
     1741 tactatttaa ctgcaaagat agagataata ttttgatttt gtttttcttt gcaatctggt
     1801 attcttttga gtcagtaaag gattggctga ttaaataaag aaatatttct ttatttgtca
     1861 acaatctaac cattttgttg tttattaata atgtatattt ctaatttatt aaatagagca
     1921 tcttatgagc aatctgggta tcaagaaagg agataaagtt gtaattattg gtggtggctt
     1981 tgctggttta cagctggcta aaacattgat gaaagctgat ttaaaagtta ttttagttga
     2041 caaacaaaat catcatcaat ttcaaccctt attttatcaa gtggccagcg gtcgtcttga
     2101 accatccagc atttcgtttc cgtttcggaa aatttttcaa aaaagtaaaa atgtcgattt
     2161 tcgaatggca gatataacca agatatatcc aaatgaaaag ataataatga cagcctatga
     2221 ccgaagcata acctacgatc atttaataat tgccacaggt tgtaaaacta atttttttgg
     2281 aaacaaggaa atgagtgaaa atgctttttc aatgaaaact actcaagaat ctatcgatat
     2341 tcgaaataaa atcctgttta gctttgaaaa agagatattt gcacgtccgg aggacaaaca
     2401 agcctggatg aatattgtca ttgttggagg cggacctaca ggagtagagc tgtcaggtgc
     2461 gtttgcggaa ttaaaaaaag atgtattgcc caaagattat cataatattg atttttcaaa
     2521 gttcaacatc attttgttgg aaggaagtaa gtatacgctg aataatatga gcgaagaat
//
LOCUS       DATDNM010000781         2735 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1483913, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000781 DATDNM010000000
VERSION     DATDNM010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1483913"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VI413_13055"
     CDS             complement(<1..280)
                     /locus_tag="VI413_13055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease HsdR"
                     /protein_id="HEY6915596.1"
                     /translation="MKASKRMKMLGFFGLVVAVSVATNLTTNYVASKQSDGFKGQENQ
                     IPAAYAKFSKVSSGLETDFTVAAELSVHAVVHVKTKTPVKVQQFGGGFP"
     gene            complement(572..1852)
                     /gene="eno"
                     /locus_tag="VI413_13060"
     CDS             complement(572..1852)
                     /gene="eno"
                     /locus_tag="VI413_13060"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEY6915597.1"
                     /translation="MSKIEKIVAREILDSRGNPTVEVDVWLESGVVGRAAVPSGASTG
                     ENEAIELRDGDKGRYLGKGVQKAVANVNNVIAPALVGISALQQRAIDKLMIQLDGTKT
                     KSNLGANAILGVSLAVARAAATYLDLPLYRYIGGTNAFTLPVPMMNIINGGSHSDAPI
                     AFQEFMIRPVGAVSFKEGLRMGAEVFHSLKKVLHDKGLSTAVGDEGGFAPNLAGGTEE
                     ALESILTAIKNAGYKPGSDVTIGLDCASSEFFKNGVYDYSKFEGPNGKKRSSAEQADY
                     LAELVANYPIDSIEDGMGEGDWDGWKLLTDKLGKKVQLVGDDLFVTNVDYLKKGIDMG
                     CANSILIKVNQIGTLTETLDAIEMAHRAGYTSVTSHRSGETEDSTIADIAVATNSGQI
                     KTGSLSRSDRMAKYNQLLRIEEELGNLAVYGYKK"
     gene            2014..>2735
                     /locus_tag="VI413_13065"
     CDS             2014..>2735
                     /locus_tag="VI413_13065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4197 domain-containing protein"
                     /protein_id="HEY6915598.1"
                     /translation="MKQLIAIILIGLTFTSCAELLQVASQYSTANTSVVTNAENISGL
                     KSSLNIGIEKAVDNLGIENGFFNNAALKLLLPKEAQPIIDNAKLIPGGQALVDKAVLS
                     LNRSAEDAVKEATPIFKTAITSMSITDAVGILFGKDNAATEYLRQNTYSQLKAAFAPK
                     VKASLGKALVANVSTNDTWNLLSSGYNSLASSTVGSIAGLKPVNVNLENYVTEKALDA
                     LFVKVAAEEKAIRTNPVARVSD"
BASE COUNT          858 a          588 c          469 g          820 t
ORIGIN      
        1 ttgggaatcc acctccaaat tgctgaactt taaccggagt tttagttttc acatgaacta
       61 ctgcatgaac agacaactcg gcggcaacag taaaatctgt ttctaaacca ctagaaacct
      121 ttgaaaattt ggcataggct gcaggaattt gattttcctg acctttaaat ccgtcagatt
      181 gtttgctggc tacatagttt gttgtcaaat tagttgccac actaactgct acgactaaac
      241 cgaaaaagcc gagcattttc attctttttg atgctttcat ttttttcaat tttataatta
      301 ataattattt gatgacaaaa gttgaattaa tatatttgtt gagataatta ttgagtttac
      361 cgctgcgaaa ataaacaaaa gtcgttccct caactataaa ttaaatagtt atttggtgat
      421 tattaacaca cactttttct cgcttaacgc gtattaacta agagaaaata aatcgtaaaa
      481 aaatctgaaa ttctcgaaca aaaaaagcca cctttatgac aggtggctta aattaatgta
      541 aaattgtcag aaataaatct gccatttttt cttatttttt gtaaccataa acagctaaat
      601 tacctaattc ttcttctatg cgaagcaatt ggttgtattt agccatacga tccgaacggc
      661 tcagtgaccc ggttttaatc tgtcctgagt ttgtagccac tgcaatatcg gcaatggttg
      721 aatcttctgt ttcacccgaa cggtgtgaag taaccgaagt ataccctgca cggtgagcca
      781 tttcaattgc atctaatgtt tcggtcaatg ttccgatttg attcacttta atcaaaatag
      841 aattggcgca acccatatca ataccctttt tcagataatc tacattggtt acaaacaaat
      901 catcgcctac caactgaact ttcttgccca atttatctgt caacagcttc caaccatccc
      961 agtcgccttc acccatgccg tcttcgatag agtcgattgg ataattggca actaattcgg
     1021 cgaggtaatc agcctgttcc gcagaagaac gtttttttcc gtttggacct tcgaattttg
     1081 aataatcata aactccattt ttgaagaact ctgatgatgc acagtccagt ccgatagtaa
     1141 catcagatcc gggtttgtag cctgcatttt tgattgcagt cagaattgat tccaatgctt
     1201 cttcagttcc acccgcaaga tttggagcga aaccaccttc gtcaccaacg gcagtactta
     1261 atcctttgtc atgcaatact tttttcaatg aatggaaaac ttcggccccc atacgcaagc
     1321 cttctttgaa agaaactgca ccaacagggc gaatcataaa ttcctgaaaa gcaataggag
     1381 catcggagtg cgaaccacca ttgataatgt tcatcatagg aaccggcagg gtaaatgcat
     1441 ttgtaccacc aatgtaacgg tacaaaggta aatccagata ggttgcagca gcacgggcca
     1501 cagctaacga aacacccaaa atggcatttg ctcccaaatt cgacttcgtt ttagtaccat
     1561 ccaactgaat cataagttta tcaattgcac gttgttgtaa tgcgcttata ccaaccaaag
     1621 caggtgcaat tacattattc acattggcaa cagctttttg aacacctttg cctaaataac
     1681 gacctttgtc accatcacgt agctcaatag cttcattttc acctgttgaa gctccggatg
     1741 gaacagctgc acggcctaca acgcctgatt ccaaccaaac atctacttct accgtaggat
     1801 ttccacgcga atccaaaatt tcgcgggcaa caatcttttc aattttactc atcttaattt
     1861 taattgatta tttatttgaa ctttgattaa gtatgattct aacaagtaaa aaaaaaaatt
     1921 gttcgtataa ttaaagataa atagccccat ttgttttcac aataacagct atatttgcag
     1981 ctataattta tatacactac taaatttgaa aaaatgaaac agttaatagc aataattctt
     2041 attggcctca cattcacttc ttgtgctgaa cttttgcaag ttgcgtcaca atactctacc
     2101 gcgaatacct ctgtggttac aaatgctgaa aatatttccg gcttaaagag ctcactaaat
     2161 attggtattg aaaaagcagt tgataatctg ggtattgaaa atggcttttt caataatgct
     2221 gcattaaaat tattgttacc caaagaggct caaccgatta ttgataatgc caaattgatt
     2281 cccggcggtc aggcattggt cgacaaagcc gtactttcac tcaatcgctc ggctgaagat
     2341 gcagtaaaag aagccactcc tattttcaaa acggccataa caagcatgag tattaccgat
     2401 gcggttggca ttctgtttgg gaaagacaat gctgccaccg aatacctgcg tcaaaataca
     2461 tattcacaac tcaaagcagc ttttgctccc aaagtaaaag catcgcttgg caaggcatta
     2521 gtagccaatg tttcgaccaa cgacacatgg aatttattaa gctcaggcta caactcatta
     2581 gcaagcagca cggtaggctc cattgccgga ttgaaaccgg tgaatgtaaa ccttgaaaac
     2641 tacgttacag aaaaagcatt ggatgcatta tttgtaaaag ttgccgccga agaaaaagcc
     2701 attcggacca atccggttgc ccgtgtaagc gattt
//
LOCUS       DATDNM010000782         2293 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1910026, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000782 DATDNM010000000
VERSION     DATDNM010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1910026"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            24..974
                     /gene="nusB"
                     /locus_tag="VI413_13070"
     CDS             24..974
                     /gene="nusB"
                     /locus_tag="VI413_13070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEY6915599.1"
                     /translation="MINRVLLRIKIVQILYSYYKSDSKSFPVAEKELFHSIEKTYDLY
                     YHLLQLSIEITRYAADRIETKRNKLRPTEEDLNPNTRFIDNKFVAQLSGNIQFTEYLK
                     EHKLSWVNDSEIIKVLFDQIIASDFYAEYMDTPAADYAADKDIWRKIFKKIILQSEDL
                     DDSIQDQNIYWTDDIEMVVSFIIKTIKRFDEAKGEEQPLLPMFKDEEDAEFASKLMRI
                     VLTKGPEFREMIDANTKNWELDRIAFMDIVIMEVALAELLNFPTIPVNVTLNEYIEIA
                     KNYSTDKSGTFINGVLDNIVGQLKKENKLIKVVMFSDNKK"
     gene            1017..1352
                     /gene="yajC"
                     /locus_tag="VI413_13075"
     CDS             1017..1352
                     /gene="yajC"
                     /locus_tag="VI413_13075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007566758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEY6915600.1"
                     /translation="MSLMSILLQAGAAAPGAGGMGSYSGILMMVLIFVVFYFFMIRPQ
                     TKRQKEIKKQREAMKPGDSVVTSGGIYGKVKDIKETTVIVEIADNVRIKVDKNSVFAT
                     AQDAQTEVK"
     gene            1363..>2293
                     /locus_tag="VI413_13080"
     CDS             1363..>2293
                     /locus_tag="VI413_13080"
                     /inference="COORDINATES: protein motif:HMM:NF019561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbbR-like domain-containing protein"
                     /protein_id="HEY6915601.1"
                     /translation="MADKGGRKIFRYYMQKLKSFFLSKDILSFLLFLALSSAFWFIHA
                     LGKERETTITVPVRYIGVPLNVAVTNSPPKEIQLSVKDQGLRLFNYSRSPISPLTIDL
                     SRTYYQKGEILITSDQLSGRISRYMHLMPTTTVLEVHPDSILIQYQKLNKKSLPIELV
                     SDIELAHQYILSDKIVVTPNRVTVFGPLSILDTLKSVRTELLKIENLSDTAYLRCKLK
                     PVKLLRYSASECKVSVFVEPFTERKVQVPVIAINCPPRLSIRTFPAFVSVVYTVGLSH
                     FNTLSESDIQVFLDYNDLKSNKLSKQKLTINNNS"
BASE COUNT          770 a          395 c          440 g          688 t
ORIGIN      
        1 aaaaaaagcg ttcactgtat tttatgatta accgagtatt actgcgtatt aagattgtac
       61 aaatcttata ttcctattat aaaagcgaca gcaaatcgtt tcctgtcgcc gaaaaagaat
      121 tgtttcatag tattgaaaaa acttacgact tgtattatca cctcttacaa ttgtcgatag
      181 aaattacccg gtacgctgct gaccggattg aaacaaaacg taacaagtta cgtcctaccg
      241 aagaagatct gaatcccaac acccgtttta ttgataacaa atttgttgca caactttccg
      301 gcaatatcca gtttactgaa tatctgaaag agcataaatt gtcgtgggta aacgactccg
      361 aaattatcaa agttcttttt gatcagatta ttgccagtga tttctatgct gaatacatgg
      421 atactcctgc cgctgattat gctgccgaca aagatatctg gcgcaaaatc ttcaagaaaa
      481 taatcctgca aagcgaagac ttggatgatt ctatccagga ccagaacatc tactggacag
      541 atgacattga aatggtggtt agttttatta tcaaaactat caagcgcttt gatgaagcaa
      601 aaggtgaaga acaacccttg ctccccatgt ttaaagatga ggaagatgct gaatttgcca
      661 gtaaacttat gcgaatagta ttgacaaaag gtcctgagtt ccgggaaatg attgatgcca
      721 acactaaaaa ctgggagttg gatcgtattg cattcatgga tattgtgatt atggaagttg
      781 cactggccga gttgcttaac tttccgacta ttccggtgaa tgtaacattg aacgaatata
      841 ttgaaattgc caaaaactac agtaccgata aaagtggaac gtttataaac ggtgttcttg
      901 ataacattgt tgggcaacta aaaaaagaaa ataagttgat taaagtggtg atgtttagcg
      961 ataataaaaa ataataaact atttttgcaa gtataattat taaataataa aagaatatga
     1021 gtctaatgag cattttatta caagcaggag ctgcagctcc gggagccggt ggaatgggta
     1081 gctattcagg cattttgatg atggttttga tttttgtggt attctatttc tttatgattc
     1141 gcccacaaac aaaacgtcag aaagaaatta aaaaacaacg tgaagcaatg aaaccaggtg
     1201 attctgtagt tacttcaggt ggtatttatg gaaaagtaaa ggacattaaa gaaactacag
     1261 ttattgttga gatagctgat aatgttcgca ttaaagttga caaaaactct gtttttgcta
     1321 cagcgcaaga tgcacaaaca gaagtaaaat aattcgggtc ttatggctga taaaggcggc
     1381 agaaagattt tccggtatta catgcaaaag cttaaatcat tctttttatc aaaagatatt
     1441 ttaagctttt tgctttttct tgccttgtca tctgcgtttt ggtttataca cgctcttgga
     1501 aaggaacggg aaacaactat aacagttccg gtccgttata taggcgttcc gctaaatgtt
     1561 gctgttacca attcacctcc aaaagaaatt cagttaagtg ttaaagacca ggggctacgg
     1621 ctattcaatt attccagaag cccaatcagt ccattaacta tcgatctgag tcgcacctat
     1681 tatcaaaaag gtgaaatact tattacttcc gatcaattaa gcgggagaat aagcagatac
     1741 atgcacttaa tgccaaccac tactgtattg gaagttcacc cggattcaat attgattcaa
     1801 tatcaaaagt taaacaaaaa aagtttacca atagaattag tttcggatat cgaattagct
     1861 caccagtata ttttaagtga taagatagtg gttacaccca acagggtaac tgtttttggt
     1921 cctctttcaa tacttgatac gctgaaatct gtccggaccg aattgctaaa gattgaaaac
     1981 ctgagtgata ctgcttattt gcgttgcaaa ttaaaaccgg taaaattact tcgatattca
     2041 gcgtccgaat gcaaggtaag tgtatttgta gaacctttta ccgagcgaaa agtacaggtg
     2101 cctgttatcg ccatcaattg cccacccaga ttatcgattc gaacatttcc ggcatttgtt
     2161 agcgtagttt atacggttgg cttaagccat tttaatacgt tgagtgagag tgatattcag
     2221 gtgttcctgg attataacga cctgaaatcg aataaactaa gcaaacagaa gcttacaata
     2281 aataataatt cat
//
LOCUS       DATDNM010000783        10401 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_733968, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000783 DATDNM010000000
VERSION     DATDNM010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 10401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10401
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_733968"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..1030)
                     /locus_tag="VI413_13085"
     CDS             complement(209..1030)
                     /locus_tag="VI413_13085"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY6915602.1"
                     /translation="MEQPFKIIKITREFVDIIRAKREEAHFHDFEELVIVTEGSLEHY
                     IDFQVEVIQAPAVSYVSMGKMHRVVERDDLRGWIINYQNEFIPDSKLNFYSNFMTSTS
                     VPLGVNGCADRFVSLCEIINSEYTQESPDFTTIRYLTTALISMIESERKRNIPIENTV
                     KATQITTFTNFLRILEENFRRDEGVTFYAEKMNMSERNLNIICKSNFSKSVSEIIETR
                     KLIEAKNLLIHTDKTVSEIGYDLGYNEKSYFTRVFRNKLSVTPTEFREMTRAILS"
     gene            complement(1149..1685)
                     /locus_tag="VI413_13090"
     CDS             complement(1149..1685)
                     /locus_tag="VI413_13090"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY6915603.1"
                     /translation="MKLLKYIGIGIVVLLLFALFVALFLPKTFVYEKSITINAPIDSV
                     WVNVNSLAALDRWSPWNAYDPQMIKETSGVDGTVGAIQSWESEVENVGSGSQTIANVQ
                     KPTLFETKLDFYKPHESHGKAYIKLLTDGVGTKATWGMTGSMPYPFNIMILFMNMERD
                     MGKDWNNGLSKLKDLSEK"
     gene            complement(1872..2813)
                     /locus_tag="VI413_13095"
     CDS             complement(1872..2813)
                     /locus_tag="VI413_13095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915604.1"
                     /translation="MKNNVFVFLTLLSIIILTLNSCIKSNDKQTGNQANSDVFHLSDT
                     LSGPYENPKITEFKAFVAELDSADAASVTKAADKYKEIFTGQPALLCDTGFVVFQALY
                     DSLEQNLSTKHQNDTTNYEPLLYNDQASVPTSLKEYRKNLQLNGFKISASEGVTYIEQ
                     DRNFIARNFYTLVTPAMKSYLVELQKENKEGFAIDGAISISPRQLVDRTVWYEKFIKE
                     NPDFVFKDNCKNYQKAYLTYLVSGYENTPLYANEETKELSDFYVNAYNYLISKFPDTQ
                     VAQTIVPYYEALKLKQTDKALAMHKDFVIKGKIYNLK"
     gene            2956..3441
                     /locus_tag="VI413_13100"
     CDS             2956..3441
                     /locus_tag="VI413_13100"
                     /inference="COORDINATES: protein motif:HMM:NF040320.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEY6915605.1"
                     /translation="MGRFTKFVPRKPQLHNNYKSTNMTIRQLSVFLENKTGHLNQILS
                     VLAQKNINIIALTVADSSDYGILRAIVSDPEKALEALRAEHFTVRVQEILSLEMGAAP
                     GSMSHILDLFTAADICIEYVYAFSFGSKSILIIRTDNSEKAIEIIKSNGLKSIREEDL
                     K"
     gene            3495..4793
                     /locus_tag="VI413_13105"
     CDS             3495..4793
                     /locus_tag="VI413_13105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacetate--CoA ligase"
                     /protein_id="HEY6915606.1"
                     /translation="MIWNKEIECMEREEMRALQSERLKQLVNRVYANVEFYRKRMDEM
                     GVKPSDIETIDDIVKLPFTYKTDLRDHYPFNLFAVPMKEIVRVHASSGTTGKPTTVGY
                     TKNDIENWREVLARCLTMAGISSDDIMQVSYGYGLFTGGLGVHYGAETVGCAVIPISG
                     GNTRRQLQLMSDFGSTVLACTPSYALHLADALAENGYSLADMKLKTGVFGAEPWTENM
                     RLELEKKWGIKAYDIYGLSEIMGPGVANDCSEHAGLHVQEDHFFPEIVHPDTKQPLPD
                     GTEGELVFTTLTKEGIPLLRYNTRDLSTLNREKCECGRTTVRMKKITGRSDDMLIIRG
                     VNLFPSQIEHVLLEMGETSAHYMLYVDRENNLDTLELQVEMDEANMMDTIRDLQMLSR
                     KIQHALNSAIGLSVKVTLVEPKTIARSEGKAVRVVDNRKK"
     gene            4815..6110
                     /locus_tag="VI413_13110"
     CDS             4815..6110
                     /locus_tag="VI413_13110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEY6915607.1"
                     /translation="MISKELVDSLFTQFGESEITRLSIREVGRLVGQIEEQSGQEFIH
                     MEMGVPGLPALPVSIAAEKEALDKGLATQYPHIEGIPFAKTEIARFAGKFMNLNVSPA
                     NCVPTVGGMQGSFAALLAAARTNPDKPYTLFIDPGFPVNKSQLQLIGVPFKSFDILHF
                     RGEKLRDKLESFLAAGNICSICYSSPNNPSWICFSEKELQIIGELATKYDVIVIEDLA
                     YFGMDFRQHYGQPGTGPFQPTVAHYTDNYILLLSASKIFSYAGQRIGMMITSETLRTR
                     HYPNLKNYFTSDVLGHFISYGVLYATTAGTSHTAQYALAATLKAVNDGEIDFVQTLHS
                     YGEKAKIMKALFLKYGFYIVYNDEDSELADGFYFTIAYPGMTSSELMKEFLYYGISAI
                     SLAITGSENPNGLRACVSFVRMDQMAVLEERLKAFAATR"
     gene            complement(6219..8783)
                     /locus_tag="VI413_13115"
     CDS             complement(6219..8783)
                     /locus_tag="VI413_13115"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunoglobulin-like domain-containing protein"
                     /protein_id="HEY6915608.1"
                     /translation="MKRALTQFFIKVDENLICEFHATTKTNFSHMKEVQFSKIQFKTR
                     LFALVLLCLLVNSTKSLAVDSSLKLQYIFNNSVLDSVSDNSGNGYKAALKNGAIVKPL
                     GRFNVLDLGSLNGYLDMTSKSGAIINTLTDFTVSLYVYVDATVNVTAAGNFIWTFANS
                     ADMTSTANGNMFFTAINNRYAISKTNWAAETSVKQNVALIKGSWQHITYTQSGSAGTV
                     YVNGVQVKIGTVNIKPSDLGATTNNYLGKSCYAGDAYLLKSLMTDFRVYNRALPASEV
                     TSLAASRAGLDSALVVQQVADAKAQLALTGLNAIISNLTLPTDGGSGVVVSWNSSNTS
                     VISNTGVVSRPTAGLDTAVVILTATLSKNGVTTTKSFTAKVVPSLSDKISAQLDSTNL
                     TISGNLNLLRSNLSLSTAGAEGSIITWSSDKPTILSSAGVILNRPAKGTGNAKVFLTA
                     SIKKGTVTITKTFEIYVAEDEGFSAYLFAYFTGNNISQEAFRFALSNDGFVYKALNNN
                     NPVISSAAVSSTGGIRDPHILRGENNDFYMVATDMVSALGWNSNRAMILLKSANLTDW
                     TSTVINIPNTYSQYAAADRVWAPQTIYDPKVGKYMVYFAMRLGSSDYDKIYYAYANST
                     FTALESAPKVLFDNAGLPTIDSDIVLKDGVYNLFFKTEGNGNGIKKAVSTTLTGGYVL
                     YDKYLQSTTNAVEGGCVFRMYNTDNWILMYDMYTSGAYQFTTSTDLINFSVVPNTVSF
                     DFTPRHGTIIPITSAEKQALNAKWGNSTGIAEKTQISFSVYPNPAVDYLNVTTSGQNS
                     EKMKISIYDFKGSKLMEKYAASATEKINVSVFKSGIYLLTCTSDDGLVSSAKFIVK"
     gene            complement(8839..>10401)
                     /locus_tag="VI413_13120"
     CDS             complement(8839..>10401)
                     /locus_tag="VI413_13120"
                     /inference="COORDINATES: protein motif:HMM:NF018647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046556 - alpha-L-arabinofuranosidase
                     activity [Evidence IEA];
                     GO_process: GO:0046373 - L-arabinose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-arabinofuranosidase C-terminal
                     domain-containing protein"
                     /protein_id="HEY6915609.1"
                     /translation="YIQFYNAIKAKYPTMQCIGNVAAWGTDNPTWTFNHPVQLLDEHY
                     YRSPQWFINQYNKYDTYSRTGPKIYAGEYAVTSGCGFGNQIAALGEAVYMAGMEKNSD
                     VVTMNSYAPIFVNVDDRKWNPDMIAYNASSVYCTPSYYVQKLFATNIGTVNIPIKDSL
                     NQKINPITGSVGLGTWATKADYSTLTVKNSQGTTLFSEPFATAANWTPKTGTWSVAGG
                     IYSQTSTATDCRSIALPVFTDSVYTYSVKARKVSGGEGFLIIFGYKDSNNFYWWNLGG
                     WGNTQHAIEQCIDGAKTAVATASGSITTNVWYDIRIEVSKKQVLCYLNDVLIHTLNNL
                     PTSLLYTSASLDEQSKQLFVKVVNPAGSDINSTLKLNGLSTGKIGGSAIVLASANGLD
                     ENSLAEPTKIVPVTTNLDSMGSTLNYTFKANSVTILKLNTGNPNSLPTIKKKDEFLTI
                     YPNPGKSFVSVKGDGPEVISVDFRNLIGQTVLSRKIHSGNVINISALKSGVYVVAASQ
                     GKNSCLTQMIKE"
BASE COUNT         3204 a         2100 c         1935 g         3162 t
ORIGIN      
        1 cctgaaaact cccaatacat tggaaatcat aagatgtttt accttgaact gtattttgct
       61 gtgagttgga tcaagaacac ctactactaa ttttgtttct gttgtgctca taattttttg
      121 ttttaaaatt tttgttgatt attatgatac aaagatacgc tcactaaaat agcaagcggt
      181 aacagttttc ggaaaaaggg tggtactttt aggaaagaat tgcgcgggtc atctcccgaa
      241 attcggttgg agtgacagaa agtttatttc gaaacacgcg tgtaaagtaa gatttctcgt
      301 tgtaacccag atcataacct atttccgaca ctgttttatc cgtatgaatc aatagattct
      361 tggcttcgat gagttttcgg gtttcgataa tttcggaaac gctttttgaa aagttactct
      421 tacatataat attcaggttg cgctctgaca tattcatttt ttcagcataa aatgtcacgc
      481 cttcgtcacg tctgaaattt tcttcaagta ttcgcagaaa attagtaaaa gtagttattt
      541 gcgttgcctt aactgtattt tcaattggaa tattacgttt gcgttctgat tcaatcatag
      601 aaataagagc agtagtcaaa taccggatag tagtgaaatc gggactttcc tgcgtatatt
      661 ctgaattgat aatttcgcac aggctcacaa accggtcggc acaaccattc acacctagcg
      721 gaacactggt ggaagtcatg aaatttgagt aaaaattaag tttagaatca ggaataaatt
      781 cgttttggta attgattatc catccgcgca aatcgtcacg ttccacaacc cgatgcattt
      841 tacccataga aacatagctc acagccggtg cttgaatcac ttccacctga aaatcgatat
      901 aatgctccaa actgccttcg gtaacaataa ccaattcttc aaaatcatga aaatgagctt
      961 cttcacgctt tgcccgaatt atatctacaa attccctggt aattttaatt attttaaagg
     1021 gctgctccat tagagtataa caattatgag atccgaacca caaatttagt gatttatact
     1081 gaaaaccaat ttattataaa aaaagattcc catatgagaa tctttttttt ataataaatc
     1141 tacactacct atttttcact caaatctttc aatttcgata gtccgttatt ccaatcctta
     1201 cccatatctc tttccatatt cataaacaga atcatgatat tgaacggata aggcatacta
     1261 cctgtcatac cccaggttgc ttttgttcca actccatcgg taagaagttt aatgtaggct
     1321 ttgccatgac tttcgtgagg tttataaaaa tcaagttttg tttcaaacaa tgtaggcttt
     1381 tgaacattag caatagtctg gctaccagac cctacatttt caacttcgct ttcccaactc
     1441 tggatagctc caacggtgcc atctacacct gaagtttctt taatcatttg gggatcataa
     1501 gcattccacg gactccatct atcaagagct gcaaggctat tcacatttac ccaaacacta
     1561 tcaatcggag cattgatggt aatggatttt tcataaacaa aggtctttgg taagaaaagt
     1621 gcaacaaaaa gcgcaaataa caacagaacc acgatgccaa ttccaatgta ttttaataat
     1681 ttcataatac aaaaatttaa ttgtttatac ttaaatgttt actcgtcgaa taaattgttt
     1741 tcagattcat aatgaaaaca caattaaagt ataaaaagtt gattttcttg caaaatatct
     1801 tgaattaccc tcaacaatca gaactatcag agcacgaatt caataattat tcatacgccc
     1861 gcttattatt cttatttcaa attatagatt ttacctttta ttacaaagtc tttatgcatt
     1921 gccagagctt tatcagtttg cttcaatttc agtgcttcgt aatatggaac aattgtttga
     1981 gctacttgcg tatctggaaa tttagaaatc agataattgt atgcatttac gtaaaaatcc
     2041 gaaagctctt tagtttcttc gttggcataa agcggggtat tttcatagcc actaacgaga
     2101 tatgtcaaat aggctttttg atagttttta caattatcct taaaaacaaa atccggattt
     2161 tctttaataa atttttcgta ccacacagtt ctgtctacca actgccgcgg cgaaatgctg
     2221 attgccccat caatggcaaa accctctttg ttttcttttt gaagctcaac gagataactt
     2281 ttcattgctg gtgttactaa tgtgtaaaaa ttccgtgcaa taaaattcct gtcttgttca
     2341 atataagtca caccttctga cgcagaaatt ttaaacccat tgagctggag gttcttccgg
     2401 tattctttta aactcgtcgg aactgaagcc tgatcgttgt acaataaagg ttcgtaattc
     2461 gttgtgtcgt tttgatgttt tgtactcaga ttttgctcca gactatcgta caaagcctga
     2521 aaaaccacaa aaccagtatc gcataataaa gccggctgac cggtaaaaat ttccttatac
     2581 ttatccgcag cttttgtgac cgaagctgca tctgcactat ccagttcagc aacaaaagcc
     2641 ttaaattcag ttattttcgg gttttcatac ggaccactca atgtatcaga caagtgaaac
     2701 acatctgaat tagcctgatt tccggtttgt ttatcattcg acttaataca cgaattcaat
     2761 gtcagtataa ttattgacaa cagggtcaaa aaaacaaata cattattttt cataattctt
     2821 tcttttttag tttaagaaac gaggttgcaa aaataatcat ttccttttga taaatggttt
     2881 aaatagcaac ccaaaactgt tgcaaaagtc atagctaaaa cacgaattat tttttttgac
     2941 caaacagtca tttatatggg cagatttact aaatttgtgc cacgtaaacc acaattacat
     3001 aacaactaca aatctactaa tatgacaatc cgccaactct ccgtttttct tgaaaacaaa
     3061 accggccatc tcaatcaaat tctttccgtt ttggcccaaa agaatataaa tattattgcg
     3121 ctgactgttg cagactcaag cgattacggc attttacgtg ccatcgtctc cgatccggaa
     3181 aaagcgttgg aagcattacg tgctgagcat ttcactgttc gggttcaaga gattctttca
     3241 cttgaaatgg gtgctgctcc tggctctatg tcacacattc tcgacctgtt caccgcagcc
     3301 gatatttgca tcgaatacgt ttatgcattc agttttggga gcaaatccat ccttataatt
     3361 cgcaccgaca atagcgaaaa agcaattgaa ataattaaaa gtaacggatt aaagtcgatt
     3421 cgggaagaag acctcaaata actggttcaa agaataaaga taactcacac aatcaatatc
     3481 acgaaaaaaa aattatgatc tggaataaag aaattgagtg catggaacgc gaagaaatgc
     3541 gtgcacttca aagcgaacgg ttgaagcaat tggtaaatcg cgtatatgcc aacgtagaat
     3601 tttaccgcaa acggatggac gaaatgggcg taaaaccgtc tgacatagaa actatagacg
     3661 acattgtaaa acttccattc acctataaaa ccgatttgcg cgaccattat ccgttcaatt
     3721 tgtttgccgt gccaatgaaa gaaattgtgc gggtacacgc atccagcgga acaacaggaa
     3781 aaccaacaac tgtgggttat actaaaaatg acattgagaa ctggcgcgaa gttctggcac
     3841 gctgtctgac catggcagga atatcttcgg acgacataat gcaggtttcg tatggttacg
     3901 gtctttttac aggcggatta ggcgttcatt atggtgccga aactgtaggt tgtgccgtta
     3961 ttcctatttc aggagggaat acccgccgtc aattgcaatt gatgtctgat tttggatcaa
     4021 ccgttttggc ctgtactcct tcctatgcgc ttcatttggc agatgcattg gcagaaaacg
     4081 ggtattcatt agccgatatg aagttgaaaa ccggcgtgtt cggcgctgaa ccctggacag
     4141 aaaatatgcg tcttgaatta gagaaaaaat ggggaataaa agcttatgat atttatggac
     4201 taagtgaaat tatgggtccg ggcgtggcaa atgactgttc tgagcacgca ggattacacg
     4261 tccaagaaga tcattttttt ccggaaattg tgcatccaga caccaaacaa ccgttgccgg
     4321 acgggactga aggagaactg gttttcacca cgttgaccaa agagggaatt ccgttattgc
     4381 gttataacac ccgcgacctt tcaaccctga atcgcgaaaa atgcgaatgt gggagaacaa
     4441 ccgtgcgcat gaaaaaaatt accggacgaa gcgacgatat gttgattatc cgtggcgtaa
     4501 atcttttccc atcgcaaatt gaacacgttt tactcgaaat gggcgaaacc agtgcacatt
     4561 atatgcttta tgtggatcgc gaaaacaatt tggatacgct tgaattgcaa gtggaaatgg
     4621 atgaagcaaa tatgatggac accatccgcg accttcaaat gctttcacgc aaaattcaac
     4681 atgctctgaa cagcgccatt ggcttaagcg taaaagttac gctggttgaa ccaaaaacta
     4741 ttgcccgcag cgaaggaaaa gcggtaagag ttgtggataa cagaaaaaag tgatttttaa
     4801 ttttatacaa gattatgata tctaaagaac tagttgattc gcttttcact caattcggag
     4861 aatcagagat tacccgctta tccattcggg aagtcggacg gttggttggg caaattgaag
     4921 aacaaagcgg gcaggaattt attcacatgg aaatgggtgt tccgggatta cctgcgttgc
     4981 ccgtttccat tgctgccgaa aaagaagcgt tggacaaagg attagcaact caatatccgc
     5041 atatagaagg tattcctttt gccaaaaccg agatagcaag atttgccggt aagtttatga
     5101 atctgaacgt atcaccggcc aattgcgttc caacagttgg tggcatgcag ggaagttttg
     5161 cagcattatt ggctgccgca cgaacaaacc ccgacaaacc ttacacgctt tttattgacc
     5221 ctggatttcc tgttaacaaa tcgcaactac aattgattgg cgttccgttt aaatcatttg
     5281 acatattgca tttccggggc gagaaattgc gggacaaatt agaatctttt cttgccgcag
     5341 ggaatatctg ctctatctgc tattcatcac cgaataatcc ctcgtggata tgtttttctg
     5401 aaaaagaatt acaaatcatt ggtgagttgg ctaccaaata cgatgtgatt gtaatagaag
     5461 acctggccta ttttggtatg gatttccgtc aacattacgg ccagccggga accggacctt
     5521 tccaacccac tgtagcgcat tacacagata attatatttt actactttcg gcttccaaaa
     5581 ttttcagtta tgccggccag cgaataggaa tgatgataac ttcggaaaca ctccggacac
     5641 gccactaccc taacctaaaa aactatttca ccagcgatgt gcttggtcat ttcatttcgt
     5701 acggagtgct ttacgccact actgcaggaa cgtcacacac ggcacaatat gctttggcag
     5761 caacattgaa agcggttaat gatggcgaaa ttgattttgt tcaaactctt cattcgtacg
     5821 gtgaaaaagc aaaaataatg aaagcgttat ttctgaaata cggtttttat attgtgtaca
     5881 acgacgaaga cagcgaactg gctgatggat tttacttcac catagcttat cccggcatga
     5941 caagcagcga actgatgaaa gaattcctct attatggaat cagcgctatt tcattagcca
     6001 ttaccggaag tgaaaatcca aacggtttac gcgcctgtgt atcgtttgta cgcatggatc
     6061 agatggctgt actcgaagaa cggctaaaag cttttgccgc tacccgttaa tggtatttgc
     6121 ctttgtggtt actatcgggt aaaaagataa aagaaatgct cagctaaagt ttagctgagc
     6181 atttctttta tatggtatat taaaaatgaa agtgaatatc atttcacaat gaactttgca
     6241 gaagaaacca agccatcgtc actagtacaa gtaagcagat aaatacctga tttgaatact
     6301 gaaacattta ttttttcggt tgccgaagca gcatatttct ccatcaattt actcccttta
     6361 aaatcgtaga tacttatttt catcttttca ctattttgcc cgctggtggt tacattcaaa
     6421 taatcgacag ctggatttgg gtaaacagaa aaggaaattt gagttttttc agcaattccg
     6481 gttgaattgc cccatttggc gttcaaagct tgtttttcag cactcgtaat tggaattatc
     6541 gttccatgac gcggtgtaaa atcgaatgaa acggtatttg gaacgactga aaaattaatc
     6601 aaatcagtac tagtagtaaa ttgatatgcg ccgcttgtgt acatatcgta catcaaaatc
     6661 cagttatcag tattatacat tctaaaaaca catccacctt caacagcatt agtcgtagat
     6721 tgcaagtact tatcatacag cacatatcca cctgtcaaag tcgttgaaac ggccttctta
     6781 attccattcc cgttaccttc agttttgaaa aacaagttat aaacaccatc cttgagcact
     6841 atatcagaat caatagttgg caaaccagcg ttatcaaaca aaactttcgg agcactttcc
     6901 aaagcggtaa aagtactatt ggcataagca taatatattt tatcgtaatc agaagatcca
     6961 agtcgcatgg caaagtaaac catatatttt cctaccttcg gatcgtaaat tgtttgcgga
     7021 gcccacacac ggtcagcagc tgcatattgc gaataagtat tcgggatatt tatcactgtc
     7081 gatgtccagt cagtgagatt agctgatttc aataatatca ttgccctgtt agaattccag
     7141 ccaagagcag aaaccatatc ggtagcaacc atgtaaaagt cattgttttc accacgtaaa
     7201 atatgcggat cgcggatacc acctgtagaa ctaacagctg cagaactaat taccggattg
     7261 ttgttattca aagccttata gacaaaacca tcattgctta atgcaaaccg gaacgcttcc
     7321 tgtgagatat tattacctgt aaaataggca aacaggtatg ctgagaaacc ttcatcttcg
     7381 gctacataga tttcaaaagt tttagttatt gttacagttc cttttttaat gcttgcggta
     7441 agaaacacct ttgcgttacc agttccttta gccggacgat ttaaaataac gcctgcactt
     7501 gacagaattg ttggcttgtc ggagctccat gtaattattg atccttcggc tccagcagta
     7561 gatagactaa gatttgatct caaaagattc agatttccgg aaatcgtgag attggtcgaa
     7621 tcaagctgtg cactgatttt atcagacaag gacggaacta cttttgctgt aaaacttttt
     7681 gttgttgtca caccattttt cgataaagta gcagtcagaa taactacagc tgtatccaac
     7741 ccggcagttg gacggcttac aaccccggta tttgaaatta cacttgtatt cgaagaattc
     7801 catgagacaa ccacaccgct tccaccgtcc gttggaagtg tcagattgga aataattgca
     7861 tttaatccgg ttaaggccaa ttgtgctttg gcatcagcaa cctgctgaac aaccaatgca
     7921 ctatccaagc cagctcttga ggcggctaat gacgttactt ccgaagcagg aagcgccctg
     7981 ttataaacac gaaaatcagt cattaatgat ttgagcaaat aagcatcgcc ggcataacat
     8041 gatttcccaa ggtagttatt tgttgttgct cctaaatcgg aaggtttaat attaactgtc
     8101 cctattttta cctggacacc attcacataa accgttccgg cactacctga ttgcgtataa
     8161 gtaatatgct gccagctacc tttgattaac gcaacattct gtttcactga agtttcggcc
     8221 gcccagttgg tttttgaaat agcataccgg ttattaatgg ctgtaaaaaa catattcccg
     8281 ttagccgttg aggtcatatc agccgaatta gcaaatgtcc agataaaatt tcctgcagcc
     8341 gtaacattta cagttgcatc aacgtaaaca tataatgaca ctgtaaagtc ggtcagcgta
     8401 ttaattattg cacctgattt actggtcata tccaaatagc cgttaagcga acccaaatcc
     8461 aacacattaa aacgacccaa tggttttaca attgcaccat ttttcaatgc agccttgtaa
     8521 ccattgcctg agttatccga aacagaatcg agaactgaat tattaaaaat atattgcaat
     8581 ttcaaagatg agtctacagc cagagacttc gttgaattta ctaacaggca caacaaaact
     8641 aaagcaaaaa gcctggtttt aaattgaatc tttgagaatt gtacttcttt catgtgtgaa
     8701 aaattggttt tagttgtcgc atggaactca catatcagat tttcatcaac tttgatgaaa
     8761 aactgcgtta atgctcgttt catgcgagaa tttattattg aatcttttaa aatatgtgat
     8821 taaaaattat gtatgcaatt actcttttat catttgggtt aagcaggaat tctttccctg
     8881 acttgcagca acaacataaa cccctgattt tagagctgat atgtttatta catttccgga
     8941 gtgaattttt ctacttaaca ctgtctgtcc tatcaaatta cgaaaatcaa cagaaattac
     9001 ttccggacca tcgcccttta ctgaaacaaa actcttaccc ggattgggat aaattgtcaa
     9061 aaactcatct ttttttttaa tcgttggcag ggaattcgga ttacctgtgt tcaatttcag
     9121 gattgtaacc gaatttgcct taaatgtata atttaaggta ctgcccattg aatcaagatt
     9181 tgtagtaaca ggaactattt tagttggctc agctaatgaa ttttcatcca acccattggc
     9241 tgaagcaaga acgattgcac taccaccaat ttttccggtc gataatccgt ttaatttgag
     9301 agttgagtta atgtcagagc cagctggatt tacaaccttc acaaaaagct gcttactttg
     9361 ttcgtccaac gaagctgaag tataaagcaa agaggtaggt aaattattga gagtatgaat
     9421 caatacgtcg ttcaaatagc acaaaacttg ctttttagat acttcgatac gaatgtcata
     9481 ccatacattt gttgtaatgc tgccgctggc tgttgccacg gcagttttgg cgccatctat
     9541 gcattgctca atagcgtgtt gcgtatttcc ccaaccgccc aggttccacc agtagaaatt
     9601 attgctatcc ttgtagccga aaataataag gaaaccctcg cccccactaa ctttgcgggc
     9661 tttgacagaa tatgtatata cagaatcagt gaaaacgggc aatgctattg accgacaatc
     9721 agttgcagta gatgtttggg aataaatgcc acctgccact gaccacgttc cggtttttgg
     9781 tgtccagttg gctgccgttg caaaaggttc tgagaataaa gttgttccct gactgttttt
     9841 tactgtcaga gttgaataat cggcttttgt tgcccacgtt ccaagtccta cagaaccggt
     9901 aatcgggttt attttctgat ttaatgagtc ttttattgga atgttgacag taccaatatt
     9961 cgttgcaaac agcttttgaa cgtaataaga aggtgtacaa tataccgaag atgcattgta
    10021 agcaatcata tcaggattcc atttccgatc gtcgacattt acaaagatcg gcgcatagga
    10081 attcatggtt acaacgtctg agtttttttc cattccggcc atgtaaaccg cttctccgag
    10141 ggctgcaatc tgattaccaa atccgcaacc cgaagttaca gcatattcac ctgcataaat
    10201 tttcggaccg gttctgctat acgtatcata tttattatat tgattaataa accattgtgg
    10261 gctacgataa taatgctcat ccaacaattg taccgggtga ttgaaggtcc acgttggatt
    10321 atcggttccc caggctgcaa catttccgat gcattgcatg gttgggtatt tggcctttat
    10381 agcattgtaa aactgaatgt a
//
LOCUS       DATDNM010000784         2398 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_948918, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000784 DATDNM010000000
VERSION     DATDNM010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_948918"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VI413_13125"
     CDS             <1..189
                     /locus_tag="VI413_13125"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="catalyzes the formation of shikimate 3-phosphate
                     from shikimate in aromatic amino acid biosynthesis;
                     Derived by automated computational analysis using gene
                     prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEY6915610.1"
                     /translation="ERLEAIGVSKRPLLANRKGEELRRFIAEGLSKRESFYEKANYSL
                     SGDIDDTVEKICKLLASL"
     gene            412..1497
                     /locus_tag="VI413_13130"
     CDS             412..1497
                     /locus_tag="VI413_13130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEY6915611.1"
                     /translation="MNTNIYSVITGTGSYIPSKQIKNEDFLNYEFYEPNGEKIDKAGR
                     EITEKFHEITTIAERRYITDDLTTSDMAFFAAEEAIKSAGIDKEELDYVIVANNFGDT
                     QYNNRASDHVPAMASKVKHKLQIKNPETIAYDITFGCPGWLQAVIQANYYIKSGDAKK
                     ILVIGADLLSRISDPHDRDCMLYADGAGAVILEAKESTTPIGILAHKTRSDTFSHAGL
                     LHMGPSYNPDFEKKDDLFLKMNGRRLYQYAIETVPPAIKACLDSSGITIGNVKKVLIH
                     QANGKLDDAILKRFYALYDIKEAPEGIMPMTVDTLGNTSVATLPTLFDLILKNNLNDH
                     QINNGDILIFASVGAGMNINAMVYKMA"
     gene            1720..>2398
                     /locus_tag="VI413_13135"
     CDS             1720..>2398
                     /locus_tag="VI413_13135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009317856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEY6915612.1"
                     /translation="MSSFVHLHVHSHYSVLDGMSSISGLVDKASKSGMHAVALTDHGN
                     MFGIKEFFNYTKKKNGKVKSQISDLQKRLKTEGISEDEKASILQEIEETKHKLFKPII
                     GCEAYVARRGRKSKDGTEDRSGYHLVLLAKNKKGYQNLCKLVSMSWIDGMYYRPRIDH
                     EILEKYSEGLIASSACLGGEIHKKVEKGDLEEAEKAILWYKRVFGDDYYIELQRHKTD
                     KPNADYEC"
BASE COUNT          797 a          504 c          473 g          624 t
ORIGIN      
        1 gaacgacttg aagctatcgg tgtaagtaaa cgtccgttat tggctaaccg caaaggtgaa
       61 gagttgagac ggtttattgc cgaaggttta tccaaacgag aatcctttta tgagaaagcc
      121 aactattcac tctctggtga catcgatgat acggtggaga aaatttgcaa gttgctagcg
      181 tctttataaa actcgaacaa ccagtagccc tactttcgtt ttttttaata ttgaaaataa
      241 ccaagataat aagttggtat aagttctgct acttaatcta ttcttttaaa taccgtaatt
      301 tatttctaaa gtcctgcaaa ctgatatcaa ccggtttgca ctgaaatatg aatcaaaccc
      361 acaaaaggcg ggagaaattt atctcacaat ttgaaaacaa aatattttcg tatgaataca
      421 aacatttaca gcgtaataac cggaaccggc agttacattc cttcaaaaca aattaagaat
      481 gaggattttc tcaattatga gttttacgaa ccgaacggtg aaaaaatcga caaagctggt
      541 cgtgaaatta cagaaaaatt tcacgaaatt accactattg ccgaaaggcg atatattacg
      601 gatgacctaa cgacatcgga catggcattt tttgctgctg aagaagctat caagtcagcc
      661 ggaatagaca aagaagaact tgactatgta attgttgcaa ataactttgg ggacacccaa
      721 tacaacaata gagcatcaga ccatgtaccc gccatggcct caaaagttaa gcacaaactt
      781 caaatcaaaa accctgagac gattgcttat gacattacat ttggatgccc cggctggcta
      841 caggctgtta ttcaggccaa ttactatatc aaatcgggcg atgctaaaaa gatattggtt
      901 attggagccg acctattgtc gcgtatcagc gatccgcacg acagagactg catgctgtat
      961 gccgacggag ccggcgccgt tattctcgaa gccaaagaaa gcaccactcc tattggcata
     1021 ttggcccaca aaacacgttc tgatacattt tcccatgccg gattattgca catgggccca
     1081 tcttacaatc ccgactttga gaaaaaagat gatttattcc tgaaaatgaa cgggcgcaga
     1141 ctgtaccaat acgccataga aacagttcca ccggcaatta aagcctgcct ggacagcagc
     1201 ggcattacta tcggcaacgt aaaaaaagtg cttatccacc aagctaatgg caaactagac
     1261 gatgctatat tgaaaagatt ctacgcgctt tatgatatca aagaagcccc cgaaggcatt
     1321 atgcctatga cagttgacac gctgggtaat acttctgtag ctactttgcc aacgttattt
     1381 gacctgatat taaagaacaa cctgaacgac caccagataa acaacggaga tattcttatt
     1441 ttcgcctcgg taggtgccgg catgaacatt aatgccatgg tttacaaaat ggcataacac
     1501 atgtaaaaaa gggaatttca tttgattggt ggggtaattg gccccaccat ttttttattt
     1561 aacacgtcgc caacagcttt gttaataccc ttttgtttga aaattgtgga taacttccca
     1621 gtcatttttt ttactccttt gaaaaattgc tgtatcttta tcagcgcaaa atcagtctat
     1681 acccatagat tgtaaattac cagaaaataa ccacttaaca tgagttcctt cgttcatctt
     1741 cacgttcact cgcactattc agtattagat ggtatgtctt ccatctccgg cctggtagac
     1801 aaagcttcca aaagcggtat gcatgccgta gcacttaccg atcatggtaa tatgttcgga
     1861 atcaaggaat ttttcaacta cactaaaaag aaaaatggca aagtaaaaag tcagatttca
     1921 gacctgcaaa aacggctcaa gacagaagga atttcggaag atgaaaaagc cagtatactg
     1981 caagaaattg aggaaaccaa acacaagctt ttcaaaccaa ttatcggttg cgaagcgtat
     2041 gttgcccgtc gtggccggaa gtcgaaagac ggaacagaag atcgcagtgg ctaccatctg
     2101 gtattgcttg caaaaaacaa aaaaggatac caaaacctat gcaaactggt ttccatgtca
     2161 tggattgatg gcatgtacta ccggccacgt atcgaccacg agattctgga aaaatacagc
     2221 gaaggattaa tagcttcgtc tgcctgcctt ggtggtgaga ttcataaaaa agtagaaaaa
     2281 ggcgatcttg aagaagctga aaaagctata ttgtggtaca aacgcgtatt tggcgacgac
     2341 tactacattg agctgcaacg tcataaaacc gacaagccaa acgccgacta cgaatgct
//
LOCUS       DATDNM010000785         3966 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_201084, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000785 DATDNM010000000
VERSION     DATDNM010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3966
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201084"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..526)
                     /locus_tag="VI413_13140"
     CDS             complement(<1..526)
                     /locus_tag="VI413_13140"
                     /inference="COORDINATES: protein motif:HMM:NF024765.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate export family protein"
                     /protein_id="HEY6915613.1"
                     /translation="MKKIFIIVLLLAAIAAPQPAVGQTVVIDGEIRPRTEYRDGYTKP
                     LLTTNDPGVFTIQRTRLGMTFTSGLLTTQITLQDSRTFGQAANASDVASTGIYEAWAE
                     MLLVPGGSFKIGRQTLKYDDSRLFSSPPWSNTGTTHDVGIFKYNINDFQAHLGFAYNN
                     NSAISSESYYTAMTK"
     gene            complement(672..1028)
                     /locus_tag="VI413_13145"
     CDS             complement(672..1028)
                     /locus_tag="VI413_13145"
                     /inference="COORDINATES: protein motif:HMM:NF012354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEY6915614.1"
                     /translation="MLNQQAFNMAAELSFYREGELFLGNAQIRLLKQVVVDGSIHAAA
                     KNLKMSYQHAWHILDKLNQLSPIPIVIRQKGGKDGGGCKISPYGMKLIRTYEKKVTDL
                     IQFLAQSNSELEGCFF"
     gene            complement(1292..2473)
                     /locus_tag="VI413_13150"
     CDS             complement(1292..2473)
                     /locus_tag="VI413_13150"
                     /inference="COORDINATES: protein motif:HMM:NF020965.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyloxyacyl hydrolase"
                     /protein_id="HEY6915615.1"
                     /translation="MRLRLSLLLVIFSATTLLSAQIDSTNTHIQWNWNKLSVSGSYMN
                     GKVMPTNIFVRGSNANSVVIDDYQAFSVRLSTQTTGEHLWERICNYPTWGIAISALDF
                     YDRNEIGIPIAVNGFIDAPIFRLNRLSLNYDLGFGITFNWKSFNPLTNKYNVAIGAGE
                     AFMSTAGLNLEYALTDHIDISGGAAFSHFSNGAIKLPNFGINAIAPKVSLKYNFYERP
                     KFIKHEIPRFTPHSEWVFSTFAGMKNIIYDSMNVSLSEKYKGMFFPVYGISVLFNRQI
                     GYSSKIGIGMTVNYNESINAQVAVDNNQLVDIDGKLLDGFQVSLYPSYEICADRISVV
                     LQPAFYIIRKVSKNQSPAFHQRVMIKYHITDQLFAGITLRDYSMHADFVEWTLGYRIS
                     K"
     gene            complement(2585..3457)
                     /gene="sucD"
                     /locus_tag="VI413_13155"
     CDS             complement(2585..3457)
                     /gene="sucD"
                     /locus_tag="VI413_13155"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014709327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEY6915616.1"
                     /translation="MSILVNKDTKLVIQGITGRDGKFHTGKMKDYGTNIVAGVSPGKE
                     GLVIDGIPVFNSVAGAVKATGANTSIIFVPAAFAADAILEASEAGIKLVVAISEGLPI
                     QDMIRITPILKQNGTLLIGPNCPGLITPGEALVGILPANIFKKGNIGFISRSGTLTYE
                     VVNLLTENDFGQTTCVGIGGDPVAGLYFIDLLERFEKDPDTIAVVVIGEIGGDAEEQA
                     AQFIAEKMTKPVVAFIAGQTAPPGKRMGHAGAIISSGAGTAAEKIAAFNKAGVPVAKE
                     PNEIPELLRQKLKK"
     gene            complement(3508..>3966)
                     /gene="sucC"
                     /locus_tag="VI413_13160"
     CDS             complement(3508..>3966)
                     /gene="sucC"
                     /locus_tag="VI413_13160"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009011181.1"
                     /note="catalyzes the interconversion of succinyl-CoA and
                     succinate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit beta"
                     /protein_id="HEY6915617.1"
                     /translation="EPDEDELVEIDANSKGLSYIRLDGNIGCMVNGAGLAMATMDMIK
                     LYGGEPANFLDIGGSSSPQKVIDAMNILLNDKNVKAVMINIFGGITRCDDVAKGLLKA
                     MEVIPTDIPIVVRLSGTNAAEGLEILKHSNLPTVSSMSEAAQKAIELSRK"
BASE COUNT         1118 a          824 c          787 g         1237 t
ORIGIN      
        1 atttggtcat agctgtatag taactctcgg atgagatggc actgttatta ttgtaagcaa
       61 aacctaaatg cgcctgaaag tcattgatgt tgtacttgaa tatgccaaca tcgtgcgttg
      121 ttcctgtatt actccagggt ggggacgaga acaaccgact atcatcgtat ttaagcgttt
      181 gccgtccaat tttgaacgaa ccacccggaa cgagcagcat ctctgcccat gcttcataaa
      241 ttccggtcga agccacatcc gatgcattag cggcctgtcc aaatgtccgc gaatcctgca
      301 aggtgatttg cgtggtcaac aatccacttg tgaatgtcat tcccaatcgg gtacgttgaa
      361 tggtgaatac tccggggtcg tttgttgtga gcagtggttt tgtgtaacca tccctgtatt
      421 ctgtgcgagg gcggatttct ccgtcgataa ctactgtttg tccaacagcg ggttgcggtg
      481 ctgcaatcgc agccagtaat aaaactatta taaaaatctt tttcatacca atactttttt
      541 gatgatttct attggataag ccaattgtaa atcgttaatg aataaatcgt aaatagcatt
      601 gtcgttataa actcaaaaga acaacgctga gtaatttttt agcgatattc taaaaaatga
      661 atatcgcaat actaaaaaaa acagccttct aattcactgt tactttgtgc cagaaactga
      721 atcaagtcag ttactttctt ctcgtaagtt cggatcagtt tcatgccata cggactaatt
      781 ttacaacctc caccgtcttt gcctcctttt tgccggatta caattggaat gggtgataac
      841 tgattcagct tatccaatat gtgccaggcg tgttgatacg acattttcag gtttttggcc
      901 gctgcgtgta tggacccatc aacgactact tgttttaaga gtcgtatttg agcatttcca
      961 agaaacaatt caccttcgcg gtaaaatgaa agctcggcag ccatattgaa agcttgttga
     1021 ttcagcatac ttgcgtgtta atcttgttgg atcgaattta aatcattttt gtgcaccaaa
     1081 atgattcaaa tcctgatttg ggcatttcaa ttgctgtgcc aattggttaa ttgcttgttt
     1141 tgtaattgtt tagtatagga tgtgtggatt gcctataatg aaatatctta ctcgaaggaa
     1201 gggaaaaagg acgagttcta ccaaaatgta ggaaaaccca ttccatgcat tttgcataga
     1261 atgggtttct aaataaaata gtttattgaa gttatttact gattctgtag cccagtgtcc
     1321 actccacaaa atcggcgtgc atggaataat cgcgcaaggt aatgccggca aaaagttggt
     1381 cggtaatgtg atatttgatc atgacacgtt gatgaaatgc cggcgattga ttcttgctga
     1441 ctttgcgaat aatgtagaaa gcaggttgca gcacgacaga aattctgtct gcacaaattt
     1501 catacgaagg atagaggctg acttgaaatc catcaagcaa tttgccgtca atatcaacca
     1561 attggttgtt atccactgcc acttgcgcat ttatcgattc gttatagttt acagtcatac
     1621 caatgccaat ttttgaactg taaccgattt gccgattgaa caatacagaa atgccataaa
     1681 caggaaagaa catgcccttg tatttttcgg aaaggcttac attcatagag tcgtaaataa
     1741 tgtttttcat tccggcaaag gtggaaaata cccattcgct gtgcggagtg aatctgggaa
     1801 tttcatgttt aatgaatttg ggtcgttcgt agaaattgta cttcaagctt acttttggcg
     1861 caatggcatt aattccgaaa ttcggcagct taattgcccc gttagagaaa tgcgaaaaag
     1921 cagcaccacc cgaaatgtca atatgatctg tcagtgcata ttccagattg agccctgcag
     1981 tactcataaa ggcttcacct gctccaattg ccacgttata tttgttagtc aatgggttaa
     2041 acgatttcca gttgaatgta attccaaatc ctaagtcgta gtttaacgac agtctgttta
     2101 gtctgaaaat gggtgcatct atgaaaccat ttacggcaat gggaatgcct atttcatttc
     2161 ggtcgtaaaa atcaagtgcc gatatggcta ttccccacgt tggataatta cagatgcgtt
     2221 cccagagatg ttccccggta gtttgcgtcg aaagccgcac ggaaaatgcc tgataatcat
     2281 caatcaccac agaatttgca ttacttccac gtacaaaaat gtttgttggc attactttgc
     2341 cattcatata acttcccgaa accgataatt tattccaatt ccactgaatg tgggtgttgg
     2401 tggaatctat ttgcgcagat aggagtgtag tagcgctgaa aattaccagt aacaaactta
     2461 gccttaatct cataaacagt gtgttcggtg tgtcgaaaat gaaaaactaa gttacaatgc
     2521 tttttagtgc atcataactt agttttcaaa ggtatagaaa attaatctta ctaaaaaata
     2581 atgattactt ttttagtttt tgtctcaaca attcaggtat ttcgtttggt tcttttgcaa
     2641 ccggaacacc ggctttgttg aatgctgcaa ttttttcggc agctgtacct gcaccgctcg
     2701 aaataatagc gccggcatgt cccatacgtt ttcccggagg agctgtttgt ccggcaataa
     2761 aggcaaccac gggcttagtc attttctcag caatgaattg tgctgcctgt tcttcggcat
     2821 cgccgccaat ttcgccaata accactacgg ctattgtgtc ggggtctttt tcgaaacgtt
     2881 ccaataaatc gatgaaatac aatccggcaa cgggatcacc accaattcct acgcaggtgg
     2941 tttgaccaaa gtcattttct gtcagcaggt ttacaacttc ataagtcaat gttccgctac
     3001 gtgaaataaa tccgatattc ccttttttga atatgttggc aggtaaaatt ccaaccaatg
     3061 cttcacccgg agtaatcagc cccggacagt ttggaccaat aagcaaagtt ccattctgtt
     3121 ttagaatagg agtgatgcga atcatgtcct ggattggaag tccttcgctg atagctacaa
     3181 ctaacttaat gccggcttcc gaagcttcga ggatagcatc ggcagcaaaa gctgcgggaa
     3241 caaaaataat ggaagtattt gctcctgtgg ctttcacggc tcctgccaca gagttgaaaa
     3301 ccggaatgcc gtcgataact aaaccttctt tgcccggtga tacacctgca acaatgttag
     3361 taccgtaatc tttcattttg cctgtgtgaa atttaccgtc gcgaccagta attccctgta
     3421 taaccaattt ggtgtcttta ttgactaata tgctcataat aatgatttta ttttttagat
     3481 gaaataaatg ccaattactt ttttagttta tttgcgactt aattctatcg ctttctgagc
     3541 ggcttcactc atagaactta ctgttgggag gtttgaatgt ttcaaaattt ccaatccttc
     3601 agcagcatta gttcccgaaa gccgcactac aattggaatg tcagttggta taacttccat
     3661 tgcttttagc aacccttttg ccacatcgtc gcagcgggtt attcctccaa aaatattaat
     3721 cattactgct tttacatttt tgtcatttag caagatattc atggcgtcaa taactttctg
     3781 agggcttgag ctaccaccaa tatccaggaa gttggccggt tcgccaccat ataatttaat
     3841 catatccatt gtagccatgg ccaatccggc accgttcacc atacaaccga tattaccatc
     3901 taaacgaatg taagacaagc ctttcgaatt tgcatctatt tccacaagtt catcttcgtc
     3961 cggttc
//
LOCUS       DATDNM010000786         3214 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1270989, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000786 DATDNM010000000
VERSION     DATDNM010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3214
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1270989"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VI413_13165"
     CDS             complement(<1..530)
                     /locus_tag="VI413_13165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEY6915618.1"
                     /translation="MTNNRVSVEIITIGDEILIGQIVDTNSAWMAVELNKAGFELAQI
                     TSVHDDADHIVESLQMALKRADIVLFTGGIGPTNDDITKQTLAKYFDTKLVYDETVLR
                     NIEQLFSTRPNFVINELTRAQAMVPEKCTVIQNLVGTAPVTWFEKEGKVIVSMPGVPY
                     EMKYAMSMEILPRLQN"
     gene            complement(535..1107)
                     /locus_tag="VI413_13170"
     CDS             complement(535..1107)
                     /locus_tag="VI413_13170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3109 family protein"
                     /protein_id="HEY6915619.1"
                     /translation="MLQIDDTIISLDLLDEKFVCDLASCKGICCIEGDDGAPLEVEEV
                     KIIEDLLPIIWDDLTEVSKDVIRKQGVSYIDADGEPVTSIVNGAECVFTYTDGDGTCK
                     CAIEKAFREGKTDFYKPISCHLYPVRLQKYDEFLAVNYHRWSVCNCARKLGGKLKVPV
                     YKFLKEPLIRKFGPEWFEQLEIADGELKNR"
     gene            complement(1121..1738)
                     /locus_tag="VI413_13175"
     CDS             complement(1121..1738)
                     /locus_tag="VI413_13175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEY6915620.1"
                     /translation="MNFIHLIDYAGTFAFAISGIRLASAKRFDWFGAYVVGLVTAIGG
                     GTIRDLLLNVTPFWMLQPSYLIVTALALVSVILMGKYLIRLNNTFFIFDAIGLGLFVV
                     VGIEKSLAAHFPFWVAILMGMITGSAGGVIRDILINEVPLIFRKDIYALACVVGGLVF
                     LACAKLHVSSPITQTASAMSIILTRVLAVKYHISLPVLKGHEENN"
     gene            complement(1827..2192)
                     /gene="secG"
                     /locus_tag="VI413_13180"
     CDS             complement(1827..2192)
                     /gene="secG"
                     /locus_tag="VI413_13180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005861586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEY6915621.1"
                     /translation="MYVLLIILIVIASILLTLLVLVQNSKGGGLAAGFSSTNQIMGVR
                     KTTDFLEKATWGLVITVVVLSVAAVGVHSSKPAASNESEIKEQVQHAKQTEPGVVAPN
                     FGENPEATKTPAPATPAKK"
     gene            complement(2201..2857)
                     /locus_tag="VI413_13185"
     CDS             complement(2201..2857)
                     /locus_tag="VI413_13185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915622.1"
                     /translation="MTHEEFISLVKQPELVASHNVSDLKELINLYPYFVPARLFYAKA
                     LQQSGSVLFASNLKFSSLYSANRRWLYYYIHPDKKISTEPYRREKTSKSSGDYFDMIN
                     AVESEGGDSKQTLKNLAERLKSARTMVVSSTTHATKKIPAINVLDEFDEEKSVLIKQI
                     PRAGSEISEDKAKKLIQERKYLDAIEILKALNLNNPKKSVYFADQIRFLEKVIANSKK
                     "
     gene            complement(2909..>3214)
                     /gene="lptE"
                     /locus_tag="VI413_13190"
     CDS             complement(2909..>3214)
                     /gene="lptE"
                     /locus_tag="VI413_13190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HEY6915623.1"
                     /translation="QTRLQILKKGGDMHLEGEIIGYQLTPMAISADTYSSETKLTMTV
                     NVRFSNNKNPDDDFEKKYTAYQTFDSSRRLDDVQEELMKTMLADIVDNIYNDTVAKW"
BASE COUNT         1038 a          721 c          479 g          976 t
ORIGIN      
        1 taattttgca aacgtggaag tatttccata ctcattgcat acttcatttc atatgggact
       61 ccgggcattg aaacaatcac ttttccttcc ttttcaaacc aggtaaccgg agcagttcca
      121 accagatttt gaataactgt gcatttctca ggaaccattg cctgggctct ggttaattca
      181 ttaatcacaa aatttggccg ggtcgaaaaa agctgctcaa tattacgaag aacagtttca
      241 tcatagacca atttcgtatc aaagtacttt gccagtgtct gctttgtaat atcatcgtta
      301 gtcggtccta ttcctccggt aaataaaaca atatcagccc ttttcaaagc catttggagc
      361 gattctacga tatgatcggc atcatcgtgt actgacgtaa tctgcgccaa ctcaaaacca
      421 gccttattaa gttctacagc catccaagcc gaattggtat caacaatctg accaatcaga
      481 atctcatcac caatggtgat tatttcaaca ctaacacgat tattagtcat aatatcatct
      541 gttttttaat tcaccatctg ctatctccaa ttgctcaaac cattcaggtc caaatttacg
      601 aatcaacggc tcttttaaaa acttataaac cggaactttc aacttaccgc ctaacttcct
      661 tgcacaatta cacacgctcc atctatggta atttacggcc aaaaattcat cgtatttttg
      721 taaccgaacc ggatacaaat gacaagaaat tggtttataa aaatcagttt taccttcgcg
      781 aaaagccttc tcaatagcac acttacaagt cccatcacca tcagtgtatg taaaaacgca
      841 ttcagcacca tttactattg aagtcaccgg ttcaccgtca gcatcaatgt acgaaacacc
      901 ctgtttacga attacatctt tagaaacctc ggtcaaatca tcccaaataa ttggcaataa
      961 gtcttctatt atcttcacct cctccacttc aagcggcgct ccatcatcgc cttcaataca
     1021 acaaattcct ttgcaagaag ccaaatcaca aacgaatttt tcatcaagta aatcaaggct
     1081 tattatagta tcatctatct gtaacatcac ttatatattt ctagttattt tcttcatgcc
     1141 ccttcaaaac aggcaaactt atatgatatt ttaccgctaa aacacgggta agaataattg
     1201 acatagctga agcagtctga gttattggtg aggacacatg caacttggca catgccagaa
     1261 aaaccaatcc tccaactaca catgccaatg catatatatc tttccggaaa atcaacggca
     1321 cttcatttat caaaatatcg cgaataactc cacctgcaga acccgtaatc atccccatta
     1381 atattgcaac ccaaaaaggg aaatgcgccg ccagactttt ttcaattcca accactacaa
     1441 acaagcccaa accgatagca tcgaatataa aaaacgtatt atttaaccga atcaggtatt
     1501 tacccatcaa aataactgaa actaatgcca gggcagttac aatcaaatat gaaggctgca
     1561 acatccaaaa cggtgtaaca ttcaggagca agtctcgaat agttccacca ccaattgcag
     1621 ttacaagccc gacaacatat gccccaaacc aatcaaaccg ctttgccgac gccaacctga
     1681 taccacttat tgcaaaagca aaagtaccgg cataatcgat caaatgaata aagttcatat
     1741 ctattgaatt aacaacaaac aattataaaa aaaaaagaaa gcgcatcaaa tatatttgat
     1801 acgctccatt ctatattttc taaatcttac ttctttgctg gcgtagctgg cgcaggagtc
     1861 tttgtcgctt caggattctc tccaaaattg ggagctacca cacccggttc agtttgcttt
     1921 gcatgttgaa cctgttcttt aatttctgac tcattcgaag cagcaggctt gctactatgt
     1981 acaccaacag ctgctacaga caatacaaca actgttataa ccaaacccca agttgctttt
     2041 tcaaggaaat cggtggtttt gcgaacaccc ataatttgat tcgttgacga aaaaccagca
     2101 gctaaaccac cgcctttaga gttttgaacc aaaaccagaa gcgtaagcaa gatagaagca
     2161 ataacaatta aaataataag aagaacgtac ataatattgt ttattttttt gagtttgcga
     2221 taactttttc taaaaatcga atttggtctg caaagtaaac actttttttc ggattattca
     2281 aatttaaggc cttcaatatt tcaattgcat ctaagtattt gcgttcttga ataagtttct
     2341 tagccttatc ttcagaaatt tctgaacctg cccttgggat ttgctttatc aatacagatt
     2401 tttcttcatc aaattcatca agaacattta ttgctggtat ttttttcgtt gcgtgggtag
     2461 tacttgaaac taccattgtg cgggcagatt taaggcgttc agccagattc tttagcgttt
     2521 gctttgaatc tcctccctcc gattctaccg cattaatcat atcaaaataa tcaccggatg
     2581 attttgaagt tttctctctt cgataaggtt cagttgaaat ctttttatcc ggatgaatat
     2641 aataatacaa ccaacgcctg ttagccgaat ataaagagga gaatttcaga ttacttgcaa
     2701 acaacacact gcccgactgc tgtaaagctt tagcataaaa cagcctcgcg ggaacaaaat
     2761 aagggtatag attaattaac tctttcaaat ccgacacatt atgagaagca accaattctg
     2821 gctgctttac aagtgatata aattcttcgt gagtcattta attattgcgt attagaatta
     2881 cccgaggatt aaaatcctat gttaaaaatc accacttagc tactgtatca ttataaatat
     2941 tgtcaacgat gtctgccaac attgttttca tcaattcttc ctgaacatca tcaagtcttc
     3001 tactgctatc aaatgtttga tatgcagtat attttttttc aaaatcgtca tcggggttct
     3061 tattgttcga aaaacggaca tttacagtca ttgtcaactt ggtttcagaa gagtatgtat
     3121 cagcactaat agccataggt gttaattgat atccaattat ttcaccctct agatgcatat
     3181 caccaccttt tttcaagatt tgcaagcgcg tttg
//
LOCUS       DATDNM010000787         2463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1484545, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000787 DATDNM010000000
VERSION     DATDNM010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1484545"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1151)
                     /locus_tag="VI413_13195"
     CDS             complement(<1..1151)
                     /locus_tag="VI413_13195"
                     /inference="COORDINATES: protein motif:HMM:NF022720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3078 domain-containing protein"
                     /protein_id="HEY6915624.1"
                     /translation="MEFKSLIGIVFLMVGISANAAATERQLLPTDSIRITKQEVIDPD
                     SLLESSSVSGIQPQIQSKTVISAPAQNPTDKTTSKKALIENFEKKVSERAVRYYKIPT
                     YIEPVKIDSLLLLNNPFFIELVFMGYPNNFKFDSKPDFHLLYYGTKPVKLGENYIITP
                     KYETADQIIGELRTEARNEISRKAADVYVMSYDELPDPNGTKSRMLAGKPIKDIKFVD
                     DNQLENATNRKLIVKKEQLGPWLRKANSLLQFSQNLASDNWYQGGSSTMSVLGMLTGQ
                     LNYDNKKSIQWENYGEWRMGFNSVFNDSTALRAVNTNDDIFKINSKLGIKAGGNFFYS
                     GSVDFSTQFFKNFKSVSSKDLKSTFLTPVRLNIGMGLDYKYKKLFSLMVS"
     gene            complement(1220..>2463)
                     /gene="rmuC"
                     /locus_tag="VI413_13200"
     CDS             complement(1220..>2463)
                     /gene="rmuC"
                     /locus_tag="VI413_13200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HEY6915625.1"
                     /translation="EANEKSLLAAQAEVEMQKSVALETLRMKTQEIERLQQELTQQMQ
                     IAGNRGMELAALKASNENLVEKLENQKTEIENLQKRLTTEFENIASKILKERSDEFSL
                     SNHKNLSEILNPLKERIQNFEKKVDETYDKELRDIISLREEVRKLTELNARVSEEANN
                     LTKALKGDVKKQGNWGEVILERVLERSGLTKGQEYEREEVVEGADMNVQRPDVIIHLP
                     DNKHIIIDSKVSLVAYERLMSAEKEDQRVAYLKDHISSLRSHVKLLSEKNYQNAQNIN
                     TPDFVLMFLPIEASFSVAVQGDSEIFAYAWERKIVIVSPTTLLATLRTISSIWKQENQ
                     TKNAQEIARLSGTLYDKFIGFAEDMAKIKTNIDRTSSSYDDAMKKMKDGNGNIIRTAE
                     KIKELGAKTGNKSLPAGFEDF"
BASE COUNT          639 a          556 c          437 g          831 t
ORIGIN      
        1 gaaaccatta aggagaacaa tttcttgtat ttgtaatcaa gccccatacc gatattcaga
       61 cgtaccggag tcagaaaagt cgattttaaa tcctttgaac ttacggattt aaaatttttg
      121 aaaaactggg ttgaaaagtc aactgaccca ctatagaaaa aattcccacc tgcttttatt
      181 ccaagtttac tgtttatctt gaaaatatca tcatttgtat ttactgccct tagagcagta
      241 ctgtcgttga acaccgaatt aaaacccatt cgccattcac cataattttc ccattgaata
      301 ctcttcttat tatcgtaatt gagctgaccg gtcaacatgc ctaataccga catggtgctg
      361 ctaccaccct gataccagtt atcggaagcc agattctgag aaaactgcag caatgaattt
      421 gctttccgga gccaaggacc gagttgttcc ttcttaacta tcaattttct attggtggca
      481 ttttctaact gattatcatc tacaaatttt atgtccttta taggtttacc tgccaacata
      541 cggctttttg ttccattggg gtcaggcagt tcatcgtacg acattacata aacatcggca
      601 gcttttcggg aaatttcgtt tctggcctca gttcgcagtt cgccaatgat ttggtcggcg
      661 gtttcatatt taggcgtaat aatgtagttt tcgcccaatt tcacaggctt tgtgccataa
      721 tacaacaggt gaaaatccgg tttcgaatca aacttgaaat tattgggata acccataaaa
      781 accaattcaa taaaaaacgg attattgaga agaagcagtg agtctatttt cactggttca
      841 atataagtcg ggattttgta ataacgcaca gcacgttcag aaaccttctt ttcgaaattt
      901 tcgattaaag cttttttact tgttgtcttg tccgttggat tttgagcagg agcgctaata
      961 acagttttag actgaatctg tggttggatt ccacttacag atgaagactc aaggagactg
     1021 tccgggtcaa taacttcttg tttggtaatg cgtatactat cagttggcag caattgccgt
     1081 tcagttgcag ctgcattcgc actgattcct accattaaaa atacaattcc aatcaaagac
     1141 ttaaactcca taatcctgca aattaactaa ttatcctata atgggtgcaa aattacgaag
     1201 aaatgttgac ccttacatgt caaaaatcct caaatcctgc cggaagagat ttattcccgg
     1261 tttttgcacc cagttctttt attttttcgg ccgtccggat tatatttccg ttgccatctt
     1321 tcattttctt catcgcatca tcatacgagc tggacgtacg gtcgatattg gtttttatct
     1381 ttgccatatc ttctgcaaat ccaataaatt tatcgtacaa tgtgccactc aaccttgcaa
     1441 tttcctgtgc atttttcgtc tggttctctt gtttccagat tgacgaaatg gtgcgcaacg
     1501 ttgccagtaa agttgttgga ctcacaatca cgattttgcg ttcccaggcg tatgcaaata
     1561 tctcactatc gccctgcaca gctaccgaaa aagaagcttc tatcggcaaa aacatcaata
     1621 caaaatcggg cgtattgatg ttttgagcat tctgataatt cttttcgctc agtagtttta
     1681 catggctgcg caacgagctg atatgatctt tcagataagc cacacgctgg tcttcctttt
     1741 cggccgacat caggcgctca tacgccacca atgacacttt tgaatcgata ataatgtgtt
     1801 tattgtccgg caaatgaata atcacgtccg gacgttgcac gttcatatct gcaccttcta
     1861 ccacttcttc gcgctcatat tcctgccctt tagtcaaccc agagcgttct aatacccgct
     1921 ccagaataac ttcaccccaa tttccctgtt tctttacgtc gcctttcagc gctttggtca
     1981 ggttgttggc ttcttcgctt actcgggcat tgagttctgt cagcttgcga acttcttcgc
     2041 gcagactaat tatatccctt aattccttat cgtaggtttc atctactttt ttctcaaagt
     2101 tctgaatacg ctctttcagt ggattcagta tctcactcag gtttttgtga ttcgacaacg
     2161 aaaattcatc cgaacgctct tttagaattt tcgatgcaat attttcaaac tccgtagtca
     2221 ggcgtttttg aagattttca atctcggttt tttggttttc gagtttctca accagatttt
     2281 cgtttgaagc tttcaatgcc gcaagttcca tgccacgatt gcccgcaatt tgcatttgtt
     2341 gcgttaattc ttgctgcaaa cgctctattt cctgagtttt catacgaagt gtttcaaggg
     2401 caacagactt ctgcatttca acctctgctt gtgctgccaa taggcttttt tcattggctt
     2461 cgt
//
LOCUS       DATDNM010000788         2065 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1697163, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000788 DATDNM010000000
VERSION     DATDNM010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1697163"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..260)
                     /locus_tag="VI413_13205"
     CDS             complement(<1..260)
                     /locus_tag="VI413_13205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915626.1"
                     /translation="MQKKLDIYRQNKTKISSLKHSAFIIIVLFVCVSTVFASTTDSIT
                     SVYKAGKFETRFQSKTKGSDEIAQNVADYLVSDFHNSPAHLFT"
     gene            complement(468..1208)
                     /locus_tag="VI413_13210"
     CDS             complement(468..1208)
                     /locus_tag="VI413_13210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEY6915627.1"
                     /translation="MSNIYINTTQNVKLFFATASVGERILAYGVDLLIKTAYAIVVYV
                     LFFQLIDITKNINMDDGISIALICLLLFPLLFYTLVSETFMEGQTFGKKLLKIKVVKI
                     DGYQAGFLDFLIRWIFSIIDIQIGYVPGVISMVSTKHTQRLGDLAAGTAVISEKSKYN
                     ISHTILMDVDEKYEPHFSQNQVMLFSDNDIRIIKENFEVALRQSNPQILDRLARKIVS
                     VMGIQSPFKRDRELIEILLKDYNYHTGK"
     gene            1233..>2065
                     /locus_tag="VI413_13215"
     CDS             1233..>2065
                     /locus_tag="VI413_13215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HEY6915628.1"
                     /translation="MREIAFIKQNKSKWLDFEQSLKSKDKRNPDELADSYIQLLNDLS
                     YSQTYYPKSKTTVYLNFLVSQIYRKIYKTRRMEHNRIVYFFKTEVPSIVYQNRKQILF
                     AFILFFFFSLLGAISARYDHTFVRLILGDDYVNMTLKNIDKGDPMAVYKSGNSLGSFL
                     GITMNNIGVAARAYVFGLSAGVLTFYVALQNGIMLGSFQYFFYEQGVFAESLRGIWLH
                     GAMEIFSIVISTAAGFILAGSFLFPKTYSRLYSFKTGVQESLKIFISTVPFFVAAGFI
                     EG"
BASE COUNT          627 a          361 c          396 g          681 t
ORIGIN      
        1 gtaaaaagat gtgctggtga gttatgaaaa tcactaacca gataatcagc cacattttgc
       61 gcaatttcat cagagccttt tgttttgctt tgaaagcggg tttcaaattt accggcttta
      121 taaacggacg taattgaatc agtggttgaa gcaaaaaccg ttgaaacaca aacaaaaaga
      181 acaataatga taaatgccga atgctttagt gaactgattt tagttttatt ttgtcgataa
      241 atatctaatt ttttctgcat tgcatatata aaatgggatg caaaattacc actattttgg
      301 ctcactttaa aattatggac gaaattagat gtaaattata atctcaaaat acaatttata
      361 gtttttaatt gcctggtata tagtaatttg atgcctgttg catttgcagg ttcaatcctg
      421 tttttaacgg agtatttgtt gcaaaataat cataggttga cctctaatta ttttccggtg
      481 tgatagttat agtctttcag taaaatttct atcaactccc ggtctctttt gaaggggctt
      541 tgaataccca taacggatac gattttgcgg gccaaccgat caagtatctg gggattagac
      601 tgacgtaaag ctacttcgaa attttccttg ataatccgaa tgtcgttgtc gctgaacagc
      661 ataacctgat tttgtgaaaa gtgaggttcg tatttttcat ctacatccat taagatggtg
      721 tgagaaatat tatattttga tttttcggaa ataacagctg ttccggcagc caaatcgccg
      781 agccgctggg tgtgtttagt gctaaccatg gaaataaccc ctggaacata accaatttga
      841 atatcaatga tggagaaaat ccatctgatt aaaaaatcta aaaatccggc ctgatatcca
      901 tcaattttta ccactttaat cttcagtagt ttttttccaa aagtctgccc ttccataaac
      961 gtttcggata caagcgtgta aaacagcaac gggaataata gcagacatat caacgcaatt
     1021 gatatgccat cgtccatatt gatgtttttt gtgatatcaa tcaactggaa gaataaaaca
     1081 taaacaacaa ttgcataagc tgtttttatc agtaaatcaa cgccataagc taatatccgt
     1141 tcccctacag aagccgtggc gaaaaatagt ttaacgtttt gtgtcgtgtt aatgtaaata
     1201 tttgacattt ttgtttattt ttgcaaataa ttatgagaga aatagcattt ataaagcaga
     1261 ataaatcgaa atggttggac tttgaacaat cgttgaagag caaagataaa cgtaaccccg
     1321 acgaactcgc ggattcgtat atccaattgt tgaacgatct ttcatattcc cagacttatt
     1381 accccaaaag caaaaccacc gtttatctta actttctggt gtcgcaaata tacagaaaaa
     1441 tttacaaaac aagacggatg gagcacaacc gcattgttta tttttttaaa actgaagtac
     1501 cttcaatcgt ttatcaaaat cggaaacaaa tattatttgc ttttattctc tttttctttt
     1561 tcagtttgct gggagctatt tctgcccggt atgaccatac atttgtaagg cttatactgg
     1621 gcgatgatta tgtaaatatg accttgaaga atattgataa aggtgatccg atggcggttt
     1681 acaaatcggg caattcattg gggtcttttc tgggcattac tatgaataat atcggagttg
     1741 cagcccgtgc ttatgttttc gggttgtcgg ccggagttct gaccttttat gttgccttgc
     1801 aaaatggcat tatgctgggg tcatttcagt atttttttta tgagcagggc gtctttgccg
     1861 aaagcctgag agggatatgg ctacatggtg ccatggaaat attcagcatt gtgatttcaa
     1921 cggcggccgg atttatactg gccggttcat tccttttccc caaaacttac tcacggctct
     1981 attcctttaa aacaggggtg caggaaagcc tgaaaatatt tatcagtacg gtgccttttt
     2041 ttgtggcagc cggttttata gaggg
//
LOCUS       DATDNM010000789         7273 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_415896, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000789 DATDNM010000000
VERSION     DATDNM010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7273
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415896"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..1598
                     /locus_tag="VI413_13220"
     CDS             228..1598
                     /locus_tag="VI413_13220"
                     /inference="COORDINATES: protein motif:HMM:NF027726.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:2001070 - starch binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusF/SusE family outer membrane protein"
                     /protein_id="HEY6915629.1"
                     /translation="MKKITFLLLLAFLAVSSASAIVSEHLYVVGNACSSGWDPGRALE
                     MTKTSDGVFTWTGVLSNTPSDARFKFLVARSWDTSVTCQIATPGHKVITSGMEEDLYV
                     RTNSGADNAFQVSETAEYTVTVDLNTMKMICTKAGVVNTDTPDLTQLYLVGDATSAGW
                     SSENALIMVKVADGVFEWAGNLTAAGEFKFLNAKGSWNRTINPLDANTDFVVGTEYSL
                     NYRQLEASPNDFKFKVTTAGLYFIQVDLNTMKVTITNATPDLSQLYIVGSATTAAWES
                     ANALEMTKQQDGVFFWTGDLTADGEFKFLNEKGSWSKTINPVDADIYFEENTEYNLNY
                     RPMEADPNDYKFKVTASGKFDITVNLNSMKITVKQSTNSEIDKLENSDLIKKIRVSEK
                     AVRIIANSNDMIQSAGIFDIAGKCLNSGQNINSTIVLGNNLANGIYIMKISCNNKQYV
                     QKVIIR"
     gene            1879..3606
                     /locus_tag="VI413_13225"
     CDS             1879..3606
                     /locus_tag="VI413_13225"
                     /inference="COORDINATES: protein motif:HMM:NF027726.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:2001070 - starch binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusF/SusE family outer membrane protein"
                     /protein_id="HEY6915630.1"
                     /translation="MKIFHLKKIVLTVIAVMFFTSMFAQPANVYLIGGPVNKNNPNWL
                     LSQKVELTKDPNNPSIFYFKGYLAYNWRGDERGNIKFLVGDTWNDAFHPNTADNQLLT
                     GTTSMRQNGDDTKWFIPADRSGDGYYELTFNTQAMTLTVDLFRHDLNPEKIYAVGGSM
                     PCGWNNNAPEVLTRANPTVAVYTWTGIMNSGDFKFLHPLSIGNWDFGYCSTTANNPVN
                     YGVAQDLVFEVRNSSETTFNDYKFTMSETAECTITVDLVNKKMTVTKNGQLYVQDIWI
                     TGSAIPGGKAKLVSDNIDPLINYHYYGPLLAGDFKFATTEVADATTKYYVPASASDAV
                     SSNVGVNLTSDATAQGWTASQANDLYKIKLNTLSNKFNGSIFSVDHIYIVGGTAVGWD
                     AGNAIELTKGTGDQANVFTFDGSLTVNAAGSDRNKFKFLLQKDWGPASFHAQVENESI
                     TAAQNFTNHISDDYKWTVDADKQGRYVIKLDALQETIQATYYPGGTTGLVDANLNIKA
                     YAANGRILIIAEGENAKLAQVFAVDGHKVTEKSFGRNVEINLAPGIYIVKVFDGKTEL
                     TTRKVIVIK"
     gene            3687..5960
                     /locus_tag="VI413_13230"
     CDS             3687..5960
                     /locus_tag="VI413_13230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008861155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HEY6915631.1"
                     /translation="MKKLFALFFCLIGFAISVSAVTGNPVANPSAIVTSGYMRFTVLT
                     PEIIRIERSTLKKFEDRASFVVINRNLPVPHFTTAEQDGYLIITTDKLTLRYKVGSNP
                     INNDPCSPNLQITMAVSGENVTWYPNKKDPYNLKGTTRTLDNAEGDVRSWLEDGLISR
                     SGWAVIDEQKARNDGSSSLMFDGSAGVDWVAQRQDPASLDMYFMGYGHDYKKALYDFT
                     QIAGKIPVPPLYVFGYWYSKYQRYSEQDMRNIVGDIKSNDIPMDVLVIDMDWHMDGYN
                     NRTDQTQWTGWTWNKALFPDPQGFINWLHQQNLKTTLNLHPADGVGRYEENFSKLASD
                     LNLPTTQTIPWNIENKNFYQAFFKDVLRPHEDMGIDFWWLDWQQWMLAKNEPKLGNTF
                     WLNHVFFNDKKNQGKDRPLIFHRWGGLGNHRYQIGFSGDSYATFPSLGFQPYFTATAA
                     NVGYGYWSHDIGGHQQPGANNPELYLRWIQYGVFSPILRTHATNASNIERRIWKYDNF
                     PLMRKAIELRYALIPYIYTYARYAYDNGVSLCRPMYYDYPEKDEAYTYDGEYMFGNDM
                     LVAPICKSDNGNATVDQTVWLPEGKWYEVATGTLLDGNQVVTRPFTREQIPYYYREGA
                     VIPLFTPIKHLNNRPDTLVFQFAPGAQGEFSLYEDENNNSNYELGNYTFTKITQATTG
                     NISTYTVQPRTGSFAGMPTTRSFRFEILDKNSPVSIKINGVDVPYTYDQGKRMIIVEA
                     IDRSYSELPLNLVVNNN"
     gene            5975..>7273
                     /locus_tag="VI413_13235"
     CDS             5975..>7273
                     /locus_tag="VI413_13235"
                     /inference="COORDINATES: protein motif:HMM:NF027726.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:2001070 - starch binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusF/SusE family outer membrane protein"
                     /protein_id="HEY6915632.1"
                     /translation="MKKIITCLIIACSVFTLNAKSWKIIGKVLEADTTVLVQDAGNPS
                     LYKYVGRLTNKSFKVFDGVDNYIPTCGLNDPFDQQVGMEKQVDESQSGFRVSYVNPNN
                     LYRITLTDGTAPKIIVEKVVPYDHMYLIGGPVNTHDPNWLLGDARELDKDPANPFIFY
                     YRGFLKYNTFGDERGSIKFLTSNTSWDPGFHPVGTSNVALAQAAKMRLGGSDTKWEIP
                     ADGSGNGYYVIKLNTLDETISVVQFEHANVDYPNNIYITGDAMPCGWVNGAPEIMTPS
                     NIMEGKYSWTGNLVPGQFKFLKTKGTWGSCYVSTVKDQPIEYGKQFPVVYELDYISNG
                     GNDYKFVATEAARCNIKLDLVTMKILVQKETENSIQNIKMNDDITISAGSGKITVKSS
                     SSSKKKISIFTIDGRKIYNESFVYNSEISLSKGYYFVEITD"
BASE COUNT         2261 a         1369 c         1569 g         2074 t
ORIGIN      
        1 acaagagaat actactaaat atcagattta caattacatt ggacagttga tgaaaaatgg
       61 aactttcagt ggaggccggt tttcagttcc ggttgttcag cccggagttt acattgtgag
      121 aatgaataca gggaatgtgt atttttctca gaaagtgatt gtgaaatagg attatacgac
      181 attgaatctc tctcaaataa ttatcaattt ttaaaattaa ttaaatcatg aagaaaatta
      241 cttttttact gcttcttgcc tttttagcgg taagttccgc ttcggcaatt gtgtccgaac
      301 atctttatgt ggtagggaac gcctgttcat cgggttggga tccgggccgg gcgcttgaaa
      361 tgaccaaaac atcggatggt gtatttacct ggacaggtgt attgtctaac acgcccagcg
      421 atgcgagatt caaatttctg gtagccagaa gctgggatac ttcagttacc tgccagattg
      481 caactccggg acacaaggta ataacctccg ggatggaaga agatctgtat gtgagaacta
      541 attccggtgc cgacaatgcg tttcaggtgt ctgaaacggc cgaatacaca gttaccgtgg
      601 atttgaatac catgaagatg atttgcacaa aagcaggtgt tgttaatact gacacgcccg
      661 atttgaccca gttgtacctt gttggagatg ccacatcggc gggttggagt tcagaaaacg
      721 ctcttatcat ggtcaaagta gccgatggag tgtttgagtg ggcaggaaac ctgacagccg
      781 ccggagaatt taaatttctg aatgctaaag gaagctggaa tagaaccatc aaccctctgg
      841 atgccaatac tgatttcgtg gttggaacag aatatagtct gaattatcgg caactcgaag
      901 caagtccgaa cgattttaaa ttcaaggtta ccaccgccgg tttatatttt attcaggtgg
      961 atctgaacac catgaaagtg accattacaa acgcaactcc ggatttgagc cagttgtata
     1021 tagtgggtag tgcaactact gccgcctggg aaagcgcgaa tgctcttgaa atgacaaagc
     1081 agcaagatgg cgttttcttc tggacaggcg atttgacggc cgatggcgag tttaaattcc
     1141 tgaacgaaaa aggaagctgg agcaaaacaa tcaatccggt ggatgccgat atctattttg
     1201 aggaaaatac cgagtacaac ctgaattacc ggccaatgga ggcagatccg aatgattata
     1261 aattcaaagt tacagcttca ggaaaattcg atataactgt aaacctgaat agtatgaaaa
     1321 taactgtaaa acaatctact aattcagaaa tcgataaact cgaaaattcg gatcttatca
     1381 aaaaaatacg agtttctgaa aaagcggtac gcattatcgc aaacagcaac gatatgattc
     1441 agtctgccgg tatttttgat attgccggaa aatgcctgaa ctcgggtcaa aatataaata
     1501 gtacaattgt tttgggtaat aaccttgcaa atggaattta tattatgaaa ataagttgta
     1561 acaacaaaca atatgttcag aaagtaatta tcagataaaa aaattcacaa tcggacctgg
     1621 ttgcatctct acattttctg tatattttgt tcttcttaag tgtatgatat atagttatat
     1681 atgtagataa tgcagcttgt ctgatctcca ttttttttat tatcagattg cctgtgttat
     1741 tatacggtta attttgcaat cgacattatg ttgagtgaat tattcaatct ttttcaaaat
     1801 gctttcaacc tttaacgttg aaagcataat tcgatatttt tcttacaaac aataatcgtt
     1861 aaacttaaat taatccaaat gaaaatcttc cacttaaaaa aaatcgtact aacagttatt
     1921 gctgttatgt tttttacctc aatgtttgct cagccagcta atgtgtattt gattggcggc
     1981 cctgtcaaca aaaataatcc taattggctc ttgagtcaaa aagtagaatt gactaaagac
     2041 ccaaacaatc catctatctt ttatttcaaa ggctatctgg cttataactg gcgtggcgat
     2101 gaaagaggca atataaaatt cctggttgga gatacctgga atgatgcatt tcaccccaac
     2161 acagctgaca atcagttgct gacaggtaca acttccatgc gccagaatgg tgatgataca
     2221 aaatggttta ttccagctga cagaagtggt gacggctatt atgaattgac atttaatact
     2281 caggcaatga cgttaactgt tgatttattc cggcacgacc tgaatccaga aaaaatttat
     2341 gcagttggtg gaagtatgcc ttgcggatgg aacaataatg ctcctgaagt tttgacccgg
     2401 gcaaatccca cagtggctgt ttatacatgg acgggtatta tgaattcggg cgatttcaag
     2461 tttttacacc cattgagcat tggcaactgg gattttggat attgttctac tactgccaat
     2521 aacccggtta attatggagt ggctcaggat ttggttttcg aagttcgcaa ttcatcggaa
     2581 actactttta atgactataa gtttaccatg tctgaaacgg ctgaatgcac tattacagtc
     2641 gaccttgtaa acaaaaagat gacagtaacg aaaaatggtc agctgtatgt gcaggatatc
     2701 tggattaccg gttcggctat tcccggagga aaagcaaaac tggttagcga taatatcgat
     2761 cctctgatca attaccacta ttatggccca ttattggctg gcgatttcaa attcgctacc
     2821 actgaggtag ctgatgcaac tacaaaatat tatgttccgg cttcagcctc agatgctgta
     2881 tccagcaatg taggtgttaa tcttacatct gacgcaaccg ctcagggctg gactgcttcg
     2941 caagccaacg atttgtataa aatcaaattg aatacattgt caaataaatt caatggctca
     3001 atttttagtg ttgaccatat ttacattgtg ggcggtactg cagttggctg ggatgccggc
     3061 aatgccatag aacttacaaa aggtaccgga gatcaggcaa atgtgtttac ttttgatgga
     3121 agtttaacgg tgaatgcagc tgggtcagac cgtaataaat ttaaattctt attgcagaaa
     3181 gactggggtc ctgccagctt ccatgctcag gttgaaaatg aatcgataac tgctgcgcag
     3241 aactttacca atcatatttc ggacgattat aagtggactg tggacgcaga taaacaagga
     3301 cgttatgtga tcaaactcga tgctttgcag gaaaccattc aggctacata ttatcccgga
     3361 ggtacaacag gtttggttga cgcgaatctg aatattaagg catatgctgc caatggtcgt
     3421 atcctgatta tagccgaagg cgaaaatgct aagttagctc aggtttttgc tgtggacgga
     3481 cataaagtga ctgagaaatc atttggtcgc aatgttgaaa tcaatttagc cccgggtatt
     3541 tatatcgtga aggtgttcga tggaaaaacc gagctgacaa ccagaaaagt aattgttata
     3601 aaataaatca ataaatatat caaatcaaag tacggtacac gacatacctt gtaatgtacc
     3661 gtactcaatc atttaagatg ataaaaatga agaaattatt tgcattattc ttttgtctga
     3721 taggctttgc gatatctgtc agtgcagtta caggtaatcc ggttgctaac ccatcggcca
     3781 tagtaacgtc gggctacatg cgcttcactg tgcttactcc ggaaataatt cgtatagagc
     3841 gtagcacgct taaaaagttt gaagacagag cctcttttgt tgtgatcaat cgcaacctgc
     3901 cggtgcctca ttttacaaca gcagaacaag atggatattt aattataacc accgacaaac
     3961 tcacattaag atacaaagtt ggaagcaatc ccataaacaa cgatccgtgt agtcctaatt
     4021 tgcagattac catggcagta agtggcgaaa atgtaacctg gtatcccaat aaaaaagatc
     4081 cttacaacct aaaaggcacc acccgtacgc tcgataacgc tgaaggcgat gtacgttcat
     4141 ggcttgagga tggactgatt tcgcgttcgg gctgggctgt gattgatgaa caaaaggcta
     4201 ggaatgatgg aagttccagc ctgatgtttg atggaagtgc tggagtggac tgggtggctc
     4261 aacgtcagga tcctgcatcg ctcgatatgt actttatggg ctacggacac gactataaaa
     4321 aagcattata cgattttacg cagattgccg ggaagattcc tgtaccacct ttgtatgtgt
     4381 ttggttattg gtattcgaaa taccaacgct actctgagca ggatatgcgc aatattgtag
     4441 gcgatattaa aagcaacgat attccgatgg atgtgctggt aattgatatg gactggcata
     4501 tggacgggta caataatcgt acagaccaaa cacaatggac aggatggacc tggaacaaag
     4561 ctcttttccc agatccacag ggatttatta actggcttca tcaacaaaat ctgaaaacaa
     4621 cactgaatct acatccggcc gatggagtgg gacggtacga agaaaatttc agcaaacttg
     4681 catccgacct gaacttgcca accacccaaa ccattccatg gaatattgag aataagaatt
     4741 tctaccaggc tttcttcaag gacgtgctgc gcccacacga agatatgggt attgacttct
     4801 ggtggctcga ctggcagcaa tggatgcttg ctaaaaatga acctaaattg ggtaatacct
     4861 tctggctgaa tcatgtattt ttcaatgata aaaagaatca gggaaaagat cggccgctta
     4921 tttttcatcg ctggggagga ttgggtaacc atcgttatca gatcggtttt tctggagatt
     4981 catacgctac atttccgtca cttggttttc aaccgtattt caccgcgact gctgccaatg
     5041 taggatatgg ttactggagt catgatattg ggggacatca acaacccggt gcaaataatc
     5101 ctgaactgta tctgcgctgg attcagtatg gcgtattttc tcctattctg agaactcatg
     5161 ctacaaatgc ttcgaatata gagcgtcgta tttggaaata cgataacttc ccactgatgc
     5221 gtaaagccat cgagcttcgg tatgcactca ttccatacat ttatacttat gcccgatatg
     5281 cttacgataa tggcgtttcg ctttgtcgtc caatgtatta tgattatccc gagaaagatg
     5341 aagcatacac ttatgatggt gaatatatgt ttgggaatga tatgctggtt gctccgattt
     5401 gtaagtcgga caatggaaat gctactgtag atcaaactgt ttggttacca gaaggtaaat
     5461 ggtacgaagt tgctacaggc actttgttgg atggtaatca ggttgttacc cggccattta
     5521 cccgcgaaca gattccatat tattatcgcg aaggcgccgt tattccgttg tttacaccaa
     5581 ttaaacatct gaataaccgt cccgatacac ttgtattcca gtttgcaccg ggtgcacaag
     5641 gtgaattttc actttacgaa gatgagaaca acaacagcaa ttacgagcta ggcaattata
     5701 cttttacaaa gatcacacaa gctacaaccg gtaatatcag tacatatacc gttcaaccac
     5761 gcacaggttc gtttgcagga atgcctacaa cccgctcatt ccgtttcgaa atactggaca
     5821 aaaacagtcc ggtgagcata aaaatcaatg gagttgacgt gccttatact tatgatcagg
     5881 gtaaacgtat gattattgtt gaagcgatag atagatcata cagtgaattg cctcttaatt
     5941 tggttgttaa taataattga aacagaattt aaaaatgaaa aaaataataa cttgtttgat
     6001 tatagcatgt tctgttttca cattaaatgc taaatcatgg aaaatcatag gcaaggtttt
     6061 ggaagccgac accacagtac ttgtgcagga tgctggaaat cccagtttgt acaaatacgt
     6121 aggaagactc acaaataaga gcttcaaagt gttcgatgga gtcgataatt atatcccaac
     6181 ctgtgggttg aatgatccgt ttgaccaaca ggtgggcatg gaaaagcaag tcgatgaatc
     6241 ccagtccgga tttcgtgtaa gttatgtcaa ccctaataac ttgtaccgga ttaccttgac
     6301 cgatggaact gctccgaaaa tcattgtaga aaaggtcgtt ccatatgatc atatgtatct
     6361 gatcggaggt ccagtaaaca cacacgaccc taattggttg ctgggcgatg caagggaact
     6421 cgataaagac ccggcaaacc cgttcatttt ctattatcgt ggttttctta aatacaatac
     6481 attcggagat gagcgtggtt caataaagtt cttaacctca aatacatcgt gggatcctgg
     6541 ctttcaccct gtaggaacaa gcaatgtggc tttagctcag gcagcaaaaa tgcgccttgg
     6601 aggttctgat accaaatggg aaattcctgc cgatggaagt ggcaatgggt attatgtgat
     6661 taagcttaac acgcttgacg aaacaataag tgtagttcaa tttgaacatg ctaatgtaga
     6721 ttatccgaac aatatataca tcacgggcga tgcaatgcct tgtggctggg taaatggtgc
     6781 tcccgaaatt atgacaccaa gcaatataat ggaaggtaaa tactcgtgga cgggcaattt
     6841 ggttccgggt cagtttaaat ttctgaaaac taagggaacc tggggaagtt gctatgtatc
     6901 gactgtaaaa gaccaaccca tcgaatacgg aaaacagttt cctgttgtgt acgaactcga
     6961 ttatatcagc aatgggggca atgactataa gtttgtagcg actgaggctg ccagatgtaa
     7021 tatcaaactt gatttggtga caatgaagat tctggttcaa aaagagacag aaaactccat
     7081 tcagaatata aaaatgaacg atgatataac gatttcagca ggttcaggga aaattacagt
     7141 taaaagttcg tcttcttcca aaaaaaaaat ctcgatattt accatagacg gaagaaaaat
     7201 ttacaatgaa tcttttgtct ataattctga aatttcgcta tccaaaggat attatttcgt
     7261 tgaaataacc gat
//
LOCUS       DATDNM010000790         5103 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_522100, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000790 DATDNM010000000
VERSION     DATDNM010000790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5103
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_522100"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..507)
                     /locus_tag="VI413_13240"
     CDS             complement(<1..507)
                     /locus_tag="VI413_13240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007484058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6915633.1"
                     /translation="MGKIISLANQKGGVGKTTTAINLAASLASLGKKVLLIDADPQAN
                     ASSGLGIDIRTLQFTIYECLIDNVPSIQAIHPTDVENLFILPSHIDLVGAEIEMLNMD
                     NRERVMQNLITPLKENYDYILIDCSPSLGLITVNALTASDSVIIPVQCEYFALEGISK
                     LLNTIKIIK"
     gene            955..2367
                     /locus_tag="VI413_13245"
     CDS             955..2367
                     /locus_tag="VI413_13245"
                     /inference="COORDINATES: protein motif:HMM:NF020337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CotH kinase family protein"
                     /protein_id="HEY6915634.1"
                     /translation="MKLNLVLGSLLVLIFASCNTIVPPIDEPNNQDSIPTDTIQKDTI
                     TATGIDYIFDINSLPEITLEISTLEWNNLLSYFDQNPDNEEYIHTNFKLTKEGKYLSL
                     NDVGLRIRGNTSRRRPEGNKGEVHNSTNAVWHHSSFALNFKKFVNGQKMAGAEKINLK
                     WFKDDATYAREVYCYDLFERFGVWTAPQSSYCQLNIKIKEDSNTTYYGIYQLVEPIDK
                     EYLKNRLGKYADSDGNLWKANWGADFKSANISQMGIENITLTQTYTPVYDLKTNSKTL
                     EAAKLQLADFITNLNSRTGNDFKAWISAKMDVNLFLKTYAVNVVCGMWDDYWCNKNNF
                     YFYFDSAGKFYFIPYDYDNTLGTSLIMKDSGKQDLLNWGNSTYPLVTKIISIPEYKAL
                     YIGYIKELCNSSNDYFFADKSISRIQNWQNKIRTFINNDTNEDIQLIDKPASWGNCSF
                     YRLLDSNNNYFKIRAANIPN"
     gene            2438..4084
                     /gene="gldG"
                     /locus_tag="VI413_13250"
     CDS             2438..4084
                     /gene="gldG"
                     /locus_tag="VI413_13250"
                     /inference="COORDINATES: protein motif:HMM:TIGR03521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated ABC transporter
                     substrate-binding protein GldG"
                     /protein_id="HEY6915635.1"
                     /translation="MTAFAALIAISFFYFFRIDLTTDKRYSIADQTKNLMSSINNPLE
                     VTVYLDGELNPGFLRLKKSTAELLDELSIYSHEAINIHYVNPALANTSEERERNYAKL
                     VAQGLTPTAVYERDKEGKSIQKVIFPWIEISYNGKKVAVCLLKNILGNSGEENLNISI
                     ENLEFEITDGIRRAVNTEVKKIAFIEGHGELSEPETYDICKSLSRYFQIDRGVLGNNA
                     SILKDYKAIIIAKPTQPFSESDKFIIDQYIMNGGNVLWLVDGVRIAKENLSTIGLSPA
                     MELDVNLSDQLFRYGVRINPILLQDVQCVSVPVNVAPKNATPQFEPSPWFYAPLLLAS
                     PEHPVTRNITEVRTEFCSGIDLVGENKQVKYQLLLATSDNTHIVGTPTTIDLSQTPKA
                     SDKSYFNAGYVPVAVAMEGHFDSDFANRMVPKGMTGTLPVREKSLYSRQIVVADGDII
                     RNETTGKTDSTVIPLGFDRYMNQQFGNKDFIQNAILYLTDNDGWMQLRSRTLKLRLLN
                     KKITNSDRITWQLANVLIPIGLLILFGIGYQIVRKRKYTK"
     gene            complement(4360..>5103)
                     /locus_tag="VI413_13255"
     CDS             complement(4360..>5103)
                     /locus_tag="VI413_13255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside recognition domain-containing
                     protein"
                     /protein_id="HEY6915636.1"
                     /translation="ALIMKRIAFAKKEVPFVMELPPYRIPTLKNTSLHMWHKGQQYLK
                     KMGNVILLASILIWALGYFPRNVQYTTNYDSQIESLHTNTKLDENEKEQKIAQLEVNK
                     ESERQEKSYIGQLGHFIEPAIQPLGYDWKMGVSIITGLAAKEIVVSSMGILYQADIKA
                     DENSRSLKDELVAQTHNNGELKGEKVFTPLVSFGFMLFVLIYFPCVAVIAAIKKESSW
                     GWAVFTMVYTTAIAWLVAFATYQIGSLFL"
BASE COUNT         1715 a          996 c          901 g         1491 t
ORIGIN      
        1 ctttataatt ttaatagtat tgagcaactt actaattcct tcgagtgcaa aatactcaca
       61 ttgaacagga ataataaccg aatcggaagc agtaagtgca tttactgtga ttaatccaag
      121 cgaaggtgaa cagtcaatta aaatataatc ataattttcc tttagcggtg taatcagatt
      181 ttgcatcaca cgttcgcgat tatccatgtt taacatttct atttcggcac caaccaagtc
      241 aatatgagaa ggaagaataa ataaattctc aacatctgtt ggatgaatag cttggattga
      301 cggaacatta tcaatcaaac attcgtaaat ggtaaattga agcgttcgga tatcaatacc
      361 taatccggaa gatgcatttg cctgtggatc ggcatcaatc aacaatactt ttttacctag
      421 cgaggctaac gatgctgcca gattgatagc agttgtagtt tttcctactc cacctttttg
      481 atttgctaac gagattattt tacccatttt tgaaaggatt tatttttgaa atattgactt
      541 aatacagata aaaatttata atcggaattc aattcagaaa ctccggcatt acctattttt
      601 taaaattatt cacaaaatgt tgaatgccat atttatgcgg cgtttcaaca gttttatgtt
      661 atggattggc aaagataaga aaataaatcc acccattcaa gagacaaata gcccctgaaa
      721 tagaaataag gttttttaat gcttaaagaa tctaaatctg cattaccaat ttagatatta
      781 tcatcaaatc tgttgataat gaggcaaatt acaaatatta cagacgaaac aattaactta
      841 tatccaacct atattcaata taaattgcgt ggtaattaat tatcacctgt ttgaaagtta
      901 aggtgtggtt aaaatgatta tctttgtagc ctacaagtaa gattcagaag aaatatgaaa
      961 cttaatttag ttttaggttc cctgttagtt ttgatatttg cgtcgtgtaa tacgattgta
     1021 ccaccaatcg acgaaccaaa taatcaggat agtattccaa cggataccat tcagaaagac
     1081 acaattactg ccactggcat tgactacatt ttcgacataa attcccttcc cgaaataaca
     1141 ctcgaaattt caactttaga gtggaacaat ctgctatcct acttcgacca gaaccctgac
     1201 aatgaagaat atatacacac aaacttcaaa ttaacaaaag agggaaaata cttatcgttg
     1261 aacgatgtag gacttcgaat aagaggtaat acaagccggc gacgcccgga aggtaataaa
     1321 ggcgaagttc acaattcaac aaatgcagta tggcatcatt ccagctttgc tctaaatttc
     1381 aaaaaatttg taaatggaca gaaaatggcg ggtgctgaaa aaatcaattt aaaatggttt
     1441 aaagacgacg caacttacgc cagagaagtt tactgctacg acttatttga acgatttggt
     1501 gtgtggacag ctccacagtc gagttattgc cagttgaaca taaagattaa agaagattct
     1561 aacactactt attatggcat ataccaacta gttgagccaa ttgacaaaga gtatttaaaa
     1621 aacaggctcg gaaaatatgc cgatagtgac ggaaatcttt ggaaagccaa ctggggagca
     1681 gattttaaaa gcgcaaacat ctctcaaatg ggcattgaaa atattactct gacccaaact
     1741 tacacgcctg tttacgattt aaaaacaaat agtaaaacat tggaagcagc taaattacaa
     1801 ttagcagact tcattacaaa tctaaatagt agaaccggga atgatttcaa agcatggatt
     1861 tctgcaaaaa tggatgtaaa tttgttcttg aaaacgtatg cggtaaatgt tgtttgcgga
     1921 atgtgggacg attattggtg caataaaaat aatttttact tctattttga ttcggcaggc
     1981 aagttctatt tcattcctta tgactacgac aacacgttag gcacttcact aataatgaag
     2041 gattccggca aacaggatct gttgaattgg ggaaacagca cctacccttt agtcaccaag
     2101 attattagca ttcccgaata caaagcattg tatattggat atataaaaga gctatgcaac
     2161 agcagtaatg attatttttt tgcggacaaa agcatttccc gtattcagaa ctggcaaaat
     2221 aaaatccgga catttataaa caatgatacc aacgaagaca tccaactgat agataaaccg
     2281 gcatcgtggg gaaattgcag cttctacagg ttattagatt caaacaataa ttatttcaaa
     2341 attcgggctg cgaatatacc caattaataa acaactcatt ataaaaccat tacattttcc
     2401 tgacatgaaa attcgaaatc ctcgaaatat acttttcttg actgcatttg cggcacttat
     2461 tgctatttca tttttttatt tcttccgaat tgaccttacg accgacaaac gatacagcat
     2521 agccgaccaa accaaaaacc tgatgagcag tataaataat ccgctcgaag ttacggttta
     2581 tcttgatggc gaattaaacc cgggcttttt acgtttaaaa aaatctactg ccgaattatt
     2641 agatgaatta tctatttatt cgcacgaagc aattaacatc cattatgtaa atccagccct
     2701 agcaaacact tctgaggaaa gagaaagaaa ctatgctaaa cttgttgcgc aaggcctcac
     2761 cccaacagct gtatatgaac gtgataaaga gggaaaatcg atacaaaaag taatttttcc
     2821 atggattgaa ataagctata atggaaaaaa agtagctgtt tgcctgctga aaaacatttt
     2881 aggaaattcg ggagaagaga atctgaatat ttccattgag aatctggaat ttgaaattac
     2941 agatggtatt cgccgcgccg taaatactga ggtaaaaaaa attgctttta ttgaaggaca
     3001 tggcgaactc tccgaacctg agacttatga tatttgcaaa tcattaagtc gctattttca
     3061 aattgacaga ggcgttctgg gaaataatgc ttccattctg aaagactaca aagccattat
     3121 tattgctaaa ccaacacagc ctttcagcga atccgacaaa ttcatcatcg atcaatacat
     3181 tatgaatgga ggaaatgtgc tttggctggt ggatggcgtt cggattgcga aagaaaacct
     3241 gtccactatc ggcctgtcgc ctgccatgga attggatgta aacctgagcg accagctttt
     3301 caggtatgga gtccgcatca accctatttt gttgcaagat gttcagtgcg tttctgttcc
     3361 ggtaaacgta gctcccaaaa atgcgacacc gcaatttgag ccttctccct ggttttacgc
     3421 cccgctcctg ctcgcttctc cggaacatcc ggtcacccgt aacattaccg aagtgcgaac
     3481 cgaattttgc tctggcattg atctggttgg tgaaaacaaa caggtaaaat accagctact
     3541 cttagcgact tctgacaata cccacatcgt tggcacaccc acaactatcg acttaagcca
     3601 aactccaaaa gccagtgata aaagctattt caatgcagga tatgtgccgg tggcagtagc
     3661 tatggaaggg cattttgatt cggactttgc caaccgtatg gttccgaagg gaatgactgg
     3721 cacattacct gtgagggaaa aaagtttgta ttcacgacaa attgtggtag ccgatggaga
     3781 tattatccgc aacgaaacaa ccggaaaaac cgacagtacg gttattccgt tgggattcga
     3841 ccgatatatg aaccagcagt ttgggaataa ggactttatt caaaatgcca ttctgtacct
     3901 caccgataat gatggttgga tgcaattacg ttcaagaaca ctgaaattga gactattgaa
     3961 taagaaaata accaatagcg accgaattac ctggcaactt gcaaacgtat tgatcccgat
     4021 aggattgttg attctttttg gaataggata tcagattgtt cgaaaaagaa aatatacaaa
     4081 atagattttt aacccaactt aaagttcaaa atcatttcgg cccgcatcca caactagccg
     4141 ggtctttcga atgagtatga gatatatttt ttgtgatttc attctttata tcacagccac
     4201 cacaaccatc acagggagac gtttcttttt tgcgaatatt ttttatcacg gcataaattg
     4261 aatatgccac gactaaacct acgataatta aaactattat tatttgatcc atttttttgt
     4321 attttagtca accacaaaaa tcagcatgca attattgatt tatagaaaca gacttccaat
     4381 ctgataagtt gcaaaagcca ccaaccaggc aatagctgtt gtgtacacca tcgtaaacac
     4441 tgcccaaccc caacttgatt ccttcttaat ggcagcaatc accgccacac acggaaaata
     4501 aatcagaaca aaaagcataa aaccaaagct caccaatgga gtaaatacct tttccccttt
     4561 taactcgcca ttattatgag tttgagcaac aagttcatct tttaaagacc tcgaattttc
     4621 atctgcctta atatcagcct ggtaaagaat ccccatcgag ctgaccacaa tttctttggc
     4681 tgccaacccg gtaataatac ttacacccat cttccagtca tatcccaacg gttgtattgc
     4741 cggctcgata aaatgcccta attgaccaat atatgatttt tcctgacgct cagattcttt
     4801 gtttacttcc aattgagcta ttttttgctc cttttcgttt tcgtctaact ttgtattagt
     4861 atgcaaagac tctatttgcg aatcgtaatt agttgtatac tgcacattac gggggaaata
     4921 acccagggcc cagattaaaa ttgaagcaag taaaataaca ttacccattt ttttcaggta
     4981 ctgttgccct ttgtgccaca tgtgcaaact ggtatttttc aacgttggaa tacggtaagg
     5041 cggcaattcc atcacaaaag gcacctcttt ttttgcaaaa gcaattcgtt tcataatcag
     5101 agc
//
LOCUS       DATDNM010000791         3421 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_94887, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000791 DATDNM010000000
VERSION     DATDNM010000791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94887"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..921)
                     /locus_tag="VI413_13260"
     CDS             complement(<1..921)
                     /locus_tag="VI413_13260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEY6915637.1"
                     /translation="MIELKKDCQYSLMVATSMGVRITPVNGQPVQSSKLFQMEVSSAE
                     TNVASISSYLGLPVKVLTTFVKDSPIAQMIKSDLRSRHMDYEGPEVAQGDPWGYRHQF
                     NIADSGFGTRGPRVLNDRAGEVGRTLNVKDFDLERIFVKEGVQILHLSGLIGALSAET
                     SEFCLELARYAKKTGTRISFDLNYRASFWKGRDKELREIFTEIASVSDILIGNEEDFQ
                     LCLGIEGPEAGGKGIQVEIEGFKGMIGRVKQAFPNASVYATTLRQVISTNEHLWGAIM
                     LDGETWNVIEPRKINVLDRIGGGDGFVGGML"
     gene            complement(1070..2239)
                     /gene="uxuA"
                     /locus_tag="VI413_13265"
     CDS             complement(1070..2239)
                     /gene="uxuA"
                     /locus_tag="VI413_13265"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002561483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008927 - mannonate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006064 - glucuronate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HEY6915638.1"
                     /translation="MYLCKQSWRWYGPNDPVSLWDIRQAGATDIVTALHQIPNGEVWQ
                     VEAIKYRKKIIAEAGLVWSVVESVPVHEDIKKRAGNYKQYIENYKQTVRNLAECDIRI
                     VTYNFMPILDWTRTDLGYTMPDRSKALRFEMAAFVAFDLYLLKRPNAEKDYTVDQISK
                     AKARFDAMSEEEKETLVRNMIAGLPGAEESFTIEQFQKALDTYAEITEDQLRNNLFYF
                     INEITTVADEVGVQMAIHPDDPPRSILGLPRILSTAEDVRKLFAAVPSKANGICLCTG
                     SFGVSSINDLTSMLREFGERLYYVHFRSTRRNEDGDFYEDNHLEGDVDMYEAMKALLV
                     VMYTYKRNIPMRPDHGHQMLDDLHKKTNPGYSAIGMLRGMAELRGLELGISRTLF"
     gene            complement(2322..3134)
                     /locus_tag="VI413_13270"
     CDS             complement(2322..3134)
                     /locus_tag="VI413_13270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008643544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6915639.1"
                     /translation="MRNLFDIKGRVIVITGGTGVLGSCMVEYLAEQGAKVVVLARNKE
                     TGDKLVNGILAKGQEAMFLQSDVNDKAVLEQNCADVIAKYGRVDVLINGAGGNQPGAT
                     IGPDKTIFDLDVDAFKKVVDLNLFGTVIPTMVFAKVMTEQKQGNIINISSESALRPLT
                     RVVGYGAAKAAVTNFTKYLAIELATKYGEGLRVNAFAPGFFISEQNRTLLTNPDGSLT
                     ARGNTIISHTPFKRFGEPEELLGTLHWLASDASKFVTGTLTVVDGGFDAFCI"
BASE COUNT          986 a          809 c          616 g         1010 t
ORIGIN      
        1 aagcataccg cccacgaaac cgtcgcctcc accaatacgg tcgagaacat ttatcttgcg
       61 cggttcaatc acattccatg tttcgccatc aagcataata gcaccccaaa ggtgttcgtt
      121 ggtgctgata acctgacgca acgtggtggc ataaacagaa gcatttggga atgcttgttt
      181 cacacggcca atcatgcctt tgaaaccttc aatttcgacc tgaatacctt tccctcccgc
      241 ttccgggcct tcaattccca aacaaagttg gaaatcttct tcgttaccaa tcaaaatatc
      301 agaaacagaa gcaatttcag taaatatctc gcgtagttct ttatcgcgcc ctttccagaa
      361 agatgcccgg tagttcaggt caaatgaaat acgcgttcct gttttcttgg cataacgagc
      421 taattctaag caaaattcgc ttgtttcagc agacaacgca ccaattaatc ctgaaagatg
      481 taaaatctgt acaccttctt ttacgaaaat gcgttccaaa tcaaaatctt ttacgttcag
      541 ggtacgtccc acttcaccgg cacgatcgtt cagcacacgt ggcccacgag ttccgaatcc
      601 gctatcggca atattgaact ggtgacgata gccccatgga tcgccctgag ctacttcagg
      661 tccttcgtaa tccatatgac ggctacgtaa gtcgctctta atcatttgtg caatcggact
      721 atctttaaca aaagtagtca gcacttttac aggaagtccc aaataagaag aaatgcttgc
      781 aacatttgtt tcagcacttg acacttccat ttgaaataat ttactgcttt gtacaggttg
      841 tccgtttacg ggtgtaatgc gaacgcccat actggttgct accataagag aatattggca
      901 gtcttttttt agttctatca tgattgtgtt taatttaaaa ctacccctag cccctaaagg
      961 ggaactaagt tagttttgct tgacatataa taatttactt ttctaaatat taatacaaaa
     1021 cgaataaatt cactgtacta atctagttcc cctttagggg cctaggggtt cagaacaaag
     1081 ttctcgagat tcccagttcc agtccgcgta attccgccat accgcgaagc attccgatag
     1141 ccgagtatcc gggatttgtt tttttatgta aatcgtcgag catttgatgc ccatggtcgg
     1201 gacgcatagg gatattgcgt ttatacgtgt acataaccac cagcaaggct ttcatagctt
     1261 cgtacatatc cacatcgcct tccaaatgat tgtcttcgta gaagtcgccg tcttcgttcc
     1321 gacgggtact gcggaaatgg acatagtata accgttcgcc aaattcgcgt aacatagaag
     1381 tcaaatcatt gattgaagaa acgccaaagg aacctgtgca caaacaaatt ccatttgctt
     1441 tgcttggaac agctgcaaac aatttgcgaa catcttcagc tgtactcaaa atacgtggta
     1501 accctaaaat agaacgcgga ggatcatccg ggtgaatagc catttgaacg ccaacttcat
     1561 cggcaacagt ggtaatttcg ttgataaaat aaaacaggtt attacgcaac tgatcttccg
     1621 taatttccgc atacgtatcc aatgcttttt ggaattgctc aatggtaaag ctttcttctg
     1681 ctcccggtaa tccggcaatc atattgcgca ccagcgtttc tttttcctct tcgctcatgg
     1741 catcaaaacg ggctttggct tttgaaatct gatctaccgt gtaatccttt tctgcattcg
     1801 ggcgtttcag caaatacagg tcgaaagcca caaaagcagc catttcgaag cgtaacgctt
     1861 ttgaacgatc aggcatagtg tatcccaaat cagtacgagt ccagtcaaga attggcataa
     1921 aattatatgt tacaattcga atgtcacatt cagccaagtt acgaactgtt tgtttgtaat
     1981 tttcaatgta ctgtttgtag tttcctgcgc gtttcttgat atcttcatgc acaggaacgc
     2041 tttcaaccac cgaccagacc aaaccagctt cggcaattat tttcttacga tactttatag
     2101 cctcaacctg ccacacttcc ccattcggaa tttggtgcaa agccgttaca atgtcagttg
     2161 cacctgcctg acgaatgtcc cataatgata ccgggtcatt cggaccgtac catctccatg
     2221 attgtttaca taaatacata atctttattt ttagaaagtt tgattactta caattctcta
     2281 cctaaaagaa tagcagttta atcaaacttt agttttttgc attaaataca gaatgcatca
     2341 aaaccgccat caacaacggt tagcgtaccg gttacaaatt tcgaagcatc gctggcaagc
     2401 caatgcaacg ttcccaacaa ttcttcaggt tctccaaatc gtttgaaagg cgtgtgagaa
     2461 ataatggtat ttccacgagc cgtcaaagat ccatcaggat tggtgagcaa tgtccggttt
     2521 tgttctgaaa taaaaaaacc cggagcaaaa gcgtttacgc gcaaaccttc accatatttt
     2581 gtagccaact caatggcaag atattttgtg aagttagtta cagcagcctt ggcagcacca
     2641 taacccacta cgcgagtcaa cggacgtaaa gctgattcag aagatatatt gataatattt
     2701 ccctgttttt gctcagtcat tactttagca aaaaccatcg ttgggataac cgttccgaaa
     2761 agattcagat caaccacttt tttgaatgca tccacatcca aatcaaagat tgttttgtcc
     2821 ggtccaatag ttgctccggg ctgatttcca cccgcaccat tgattaaaac atccacacgg
     2881 ccatatttag caattacgtc ggcacagttt tgttccaaca cggctttatc gtttacatcc
     2941 gattgcaaaa acatagcttc ctgaccttta gccagaatgc cattcaccag tttatcaccg
     3001 gtttccttgt tacgtgccag caccactact tttgcaccct gttcggccag gtattccacc
     3061 atgcaactac ccaaaacgcc tgttccaccg gtaattacaa ttacacggcc tttaatatca
     3121 aataagtttc tcatattgtg tttcaattta acccccagcc cctaaagggg aatttagtta
     3181 gtattatctc tgataaaaaa tcaagaatga aactagtcat atttcccctt gggcgttagg
     3241 tgtagttttt ataaattaaa caagcgtttc aaatgacgtt cgtagatatt ttcttcaacg
     3301 catgcaccaa ttacgtcagg atatttttcc aacaaatcag tatagatctt tcccatttcg
     3361 gaagctactt tgtaagctac gtgaattaac tgacggaaat taggattata atcagcattt
     3421 c
//
LOCUS       DATDNM010000792         2006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1485078, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000792 DATDNM010000000
VERSION     DATDNM010000792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1485078"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..299
                     /locus_tag="VI413_13275"
     CDS             <1..299
                     /locus_tag="VI413_13275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915640.1"
                     /translation="SKEKSIYFNKAIFILNHKNDLDFIKGLERIEITVENLVEIQELQ
                     KLKDESNSSENNSTNKKNHYGSENDKVKSIIFTFNEINRKWIRFTDNKIDVKGR"
     gene            460..843
                     /locus_tag="VI413_13280"
     CDS             460..843
                     /locus_tag="VI413_13280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915641.1"
                     /translation="MGNKNSNVNVKYIELQIAEKENDGKYEVDGTIIVNYTGRFDSIS
                     INSQIEDSSDVFTYTEVDDKKINHPYARLSIFKKDVKDPKIIKFKAYTNHNPINTESN
                     VKFRATLIQEHKEIASDIKFIKLKK"
     gene            complement(854..1327)
                     /locus_tag="VI413_13285"
     CDS             complement(854..1327)
                     /locus_tag="VI413_13285"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEY6915642.1"
                     /translation="MEQVKRFQIGGISIVCFIVIVVVSLSYYQFLFLPAYNAKPVVAD
                     AILHPAQATPVSIDVGSSQPSQTHNFEPKQSKGSLGVSNKVVWTNTDSVPHSVTSDNN
                     YVDPINGPFNSISTIGLIPPKGTFTYTFTQAGEYSYHCEPHPWMTGKVTITENFG"
     gene            complement(1421..>2006)
                     /locus_tag="VI413_13290"
     CDS             complement(1421..>2006)
                     /locus_tag="VI413_13290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915643.1"
                     /translation="MALLVPLSFGFTYLMIKLAKNAENNAKSQKKPAEKSAIQLPEKW
                     LYIIFVCLIGFQVYLNIATYYALLSGMKNFSLFLVGIIMLVFAGMFHLYRYGKNLPKS
                     NIEVISSKRPGVGLSSFGNRILGKDSSRKALTATQSAEASVSSLPNNTEIEKEKAIEP
                     EIKTASKGTSISTSSTSASTSSTSASTSSRSSTS"
BASE COUNT          803 a          281 c          337 g          585 t
ORIGIN      
        1 cgtcaaaaga aaaatccatc tactttaata aagcaatttt tatactaaac cataaaaatg
       61 atttagattt tattaaagga ctagagagaa tagagataac agtagaaaat ttagttgaaa
      121 tacaagagtt acaaaaatta aaagatgaaa gcaatagtag cgaaaacaat tcaacaaata
      181 aaaaaaatca ttatggatca gaaaatgata aagttaaatc gattattttt acatttaatg
      241 aaataaatag aaaatggatt cgatttacag ataacaaaat agatgtaaaa ggtagatgac
      301 tcagattgaa ttggaagtat aatgcacggg atgaggatga tataaaaaat ataattcgca
      361 aaaaacacca cgtcaaatta tttttaataa aataatcaaa acataaagac aaaaagaaaa
      421 tatacattaa tttaaaaata agtgcaaaaa aataacctta tgggcaataa gaattctaac
      481 gtaaatgtaa aatatattga attgcaaatt gcagaaaaag aaaacgatgg gaagtacgag
      541 gtagacggaa caataatagt aaattataca ggcagatttg atagcataag cataaattca
      601 cagatagaag attcatctga tgtgtttacc tatactgaag tggatgataa aaaaattaat
      661 catccttatg caagattatc aatttttaaa aaagatgtaa aagaccccaa aataataaaa
      721 ttcaaagctt atacaaatca taaccctata aatacagaat cgaatgtaaa atttagagca
      781 acgctaatac aagaacataa agaaattgca tcagatatca agtttataaa attaaaaaaa
      841 taataaaaaa gaattatcca aagttttctg taatcgtaac tttaccagtc atccatggat
      901 gtggctcaca gtgataagag tattctccgg cctgcgtgaa tgtgtatgtg aatgtaccct
      961 ttggtggaat aagacctata gtcgatatag aattaaaagg tccattaatt ggatccacat
     1021 aattattatc agaggtcaca gaatgaggta cagaatcagt gtttgtccat acaaccttat
     1081 tggatacacc taatgagcct tttgattgct ttggttcaaa attatgagtt tgtgaaggct
     1141 gtgatgatcc tacatcgatt gaaacaggag ttgcctgagc tggatgaaga atagcatctg
     1201 ctactacagg ttttgcatta tatgcaggca gaaataaaaa ttgataatat gataagctaa
     1261 caactacaat cacaataaaa catacaatac taataccccc tatttgaaat cgttttactt
     1321 gttccaatta aaattaaagt atatgaaaga taataaaaat atttttatta tttaagacaa
     1381 agctactttc aattaaaaga tcgtcgaata ttaaaaaagg ttatgatgta gaggatcgcg
     1441 aggaagtgga tgctgaagta gaggaagtgg atgctgaagt agaggaagtg gatatagagg
     1501 ttccctttga cgcagttttt atttcaggct caatagcttt ttctttttct atttctgtat
     1561 tattaggcag ggaagaaaca gacgcctcgg cggattgagt tgcagtaagc gccttccttg
     1621 aactatcctt accaagaatt ctatttccaa aggatgaaag accgaccccg ggcctctttg
     1681 atgatataac ttcgatattg gattttggaa ggttttttcc atatctataa aggtggaaca
     1741 tacctgcaaa taccagcata attataccaa ccaagaacaa cgaaaagttt ttcattccac
     1801 ttagtaatgc ataatatgtt gcgatattca aatatacctg gaatccaata aggcatacaa
     1861 atatgatata tagccacttt tcaggtaatt gaattgcact tttttcagca ggctttttct
     1921 ggcttttagc attgttttct gcattttttg caagctttat cattaaatac gtaaacccaa
     1981 aagacagagg aacaagtaaa gccatc
//
LOCUS       DATDNM010000793         2384 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1162811, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000793 DATDNM010000000
VERSION     DATDNM010000793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1162811"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..924)
                     /locus_tag="VI413_13295"
     CDS             complement(<1..924)
                     /locus_tag="VI413_13295"
                     /inference="COORDINATES: protein motif:HMM:NF024245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEY6915644.1"
                     /translation="MKRFLLYIILILSCSYSLRAQDAASTTEQLIADIFEQYTAESEE
                     TIDYDSFFEDLMFCAQNPINLNQTTREQLEKLPFLSDIQIENIISYVYESGSMQTIYE
                     LQLVEGLDMTDIRRMLPFVAVGEAIDQSKKIYWHDLLKYGKNELYFRLDKGLETKEGY
                     QFLPEEDPNSAEANSNNYLGNSLYHSLRYKFHFKDRIQFGFTAEKDAGEQFWGTTHKG
                     YDFYSAHAQLNNFGKFKTIVVGDFRANFGQGLVLHPEFGMGKSSYVLNVMPHNSGLKK
                     FSSTDESNFFRGGGATVRLGKFDLSGFYSNKM"
     gene            complement(924..1745)
                     /locus_tag="VI413_13300"
     CDS             complement(924..1745)
                     /locus_tag="VI413_13300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915645.1"
                     /translation="MKKIRLVLILLLLHELIFAQISAIIPTSTSIANTSVADTKNWTA
                     FDNPAMLGYVDNSEIGTQFENRYLISELSTKSFQVGIPSKLLNAGLSFSHFGYSLYHE
                     MMVGLVFARNFSDKFALGMQFNYYTAFFAATNSYRGAFLPQIGFSAKLSPNFSLGFHS
                     FNPFQTNMKTEFAIKRLPSVFSMGTEYFFSPELTWRTQIDKEVSSNYRFATGFEYQMI
                     EQLSVKMGAYGSDYLVPCLGFGFNSGKVGVNLNCELHPLLGLNTLAAIKYRFIAR"
     gene            1920..>2384
                     /locus_tag="VI413_13305"
     CDS             1920..>2384
                     /locus_tag="VI413_13305"
                     /inference="COORDINATES: protein motif:HMM:NF013934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEY6915646.1"
                     /translation="MSIEKTTYELEFLANTLLKMNDLINKILSLFSKKPATVIAEKKQ
                     IRQEIRSLKKLLTNEQKQTEAKAVFDKIEMLPEFKVAETILIYWSTTDELPTQAAISN
                     WCTEKQLFLPSVNGEKMVLKHYSPEGKLVQKSLGIWEPDLSETYNGKIDLVIV"
BASE COUNT          804 a          481 c          432 g          667 t
ORIGIN      
        1 cattttattg gaataaaaac cagacaaatc aaacttccca agccggacag tcgctcctcc
       61 accccgaaaa aaattactct cgtcagtgga actgaatttc ttcaatcctg aattatgagg
      121 cataacgttc agcacatacg acgatttgcc catgccaaat tcaggatgaa gcactaaccc
      181 ttggccgaaa ttagcccgaa aatccccaac cacaatagtt ttaaacttgc caaagttatt
      241 caattgcgca tgagccgaat aaaaatcata acctttgtgt gtcgttcccc aaaattgctc
      301 tcccgcatct ttctccgccg tgaaaccaaa ctgaatccgg tctttgaaat gaaatttgta
      361 acgaagcgaa tgataaaggc tatttcccaa ataattgtta gaattggctt cagccgaatt
      421 aggatcttcc tccggtagaa actggtatcc ttcctttgtt tcaagtcctt tgtctaaacg
      481 gaaatacaat tcatttttgc cgtatttcag caaatcgtgc caataaattt tctttgattg
      541 gtcaatcgct tctccaacgg ctacaaaagg taacatacgc cggatatcgg tcatatcaag
      601 cccttccacc aactgaagtt cgtaaatggt ttgcatcgaa ccagattcat acacatacga
      661 aatgatattt tcaatctgaa tatccgacaa aaatggtaac ttttctaatt gttcacgtgt
      721 tgtctgattc aggttaatcg gattctgcgc acaaaacatt aaatcttcaa aaaacgaatc
      781 ataatcaata gtctcctcac tttcagcagt atattgctca aaaatatcag cgattaactg
      841 ttcggtggta cttgcagcat cctgtgctct tagcgaataa gaacagctca aaatcagaat
      901 tatatataaa aggaatcgtt tcattagcgg gcaataaaac ggtatttgat ggctgcgagt
      961 gtatttaatc ccagcaacgg atgcagttcg caattcagat tcacaccaac tttcccgcta
     1021 ttgaatccaa atccaagaca aggcactaaa taatcggaac cgtaagcacc cattttcacg
     1081 gacaattgtt caatcatctg atattcaaaa ccggtagcaa aacgataatt gctgcttact
     1141 tccttgtcaa tttgagttcg ccaggtcagt tccggcgaga aaaagtattc cgtccccatg
     1201 ctgaaaacag acggcagacg tttgattgca aattcagttt tcatattggt ctgaaaggga
     1261 ttaaatgaat gaaatcccaa gctgaaattt ggcgacagct ttgccgaaaa gccaatttga
     1321 ggcagaaaag ctccccgata cgaattcgta gccgcgaaaa aggctgtgta gtaattgaat
     1381 tgcatcccaa gcgcgaattt atcggagaaa ttccgggcaa acaccagacc caccatcatt
     1441 tcgtgataaa gcgaatagcc aaagtgggag aatgaaaggc ccgcattcag aagttttgac
     1501 ggaattccca cctgaaaact tttggtagaa agttccgaaa tcaaataccg gttctcaaat
     1561 tgcgttccta tttccgaatt atcaacataa cctaacatgg ctggattatc gaatgccgtc
     1621 caatttttag tatcggctac agaagtattg gcaatagaag ttgaagtggg tatgatagct
     1681 gaaatctgag caaaaatgag ctcatgaagg agaagtaaaa tcaacactaa acggatcttt
     1741 ttcatattca ttaatagata tatggtgata aaaagcagaa aatggtcgaa aacaaccagt
     1801 tatattcggt taacaaagtt atgaatatat tgcagattaa caaacatctt tgaaaaatat
     1861 tttcattttg aattaaaaaa atttttccac ttgctattta tctgacagat tgtataattt
     1921 tgtcaatcga aaaaacaaca tacgaactgg aatttttggc aaatactctc ctgaaaatga
     1981 atgaccttat taataaaata ttatcacttt tctcgaaaaa gcctgcaact gttattgctg
     2041 agaaaaagca aatcaggcaa gaaatccgct cattaaagaa acttttgacc aatgagcaga
     2101 agcagaccga agcaaaagct gtttttgata aaattgaaat gctgcctgag tttaaagtgg
     2161 ctgaaactat cttaatatat tggtctacaa cggatgaact gcccacacaa gctgccattt
     2221 caaactggtg cacagaaaag cagctatttt taccttccgt taatggagaa aaaatggtat
     2281 tgaaacatta ttctccggaa ggaaaattgg ttcaaaaatc attgggaatt tgggagccgg
     2341 atttatcgga aacgtataat gggaagattg atctggtcat tgtt
//
LOCUS       DATDNM010000794         5124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_416290, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000794 DATDNM010000000
VERSION     DATDNM010000794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5124
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416290"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1449)
                     /locus_tag="VI413_13310"
     CDS             complement(<1..1449)
                     /locus_tag="VI413_13310"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6915647.1"
                     /translation="MKKQSIILLIIGVFIISLSTSCSDFLQVSSNSLLSDDVVFTNPD
                     SANQGIAAIYDIIGQNNSYRNRLWLQMGLNTDIEYRSGWSSGAVLSSIKSDDYFALYN
                     PNKTVGDGYNNPDAANPWSRIYQGIERANLAIAGIRKYGSPAEGNDMGQLLGEALTMR
                     AFFYYDLVKWWGDVPARFEPVREATIYIAKSNRDTIYNQIIKDLQSATVLLAAPAAHK
                     YTTTTKRVSKDAARGLLARVCLSAAGYSMRPIAGTDDSEIKINVSDARRTELYTIARN
                     ACKDIITDGHYSLDPSFKNIFYEQCQDIDIQNRETIWQLPYFMGIRGRMLYNLGLPRD
                     ADGVHNKVSVGGQFKVMPSFFYDYNPNDTRRDITVVPYKVTKSAVDSKMEQSVSSGIT
                     GYNIAKWRAEWVKTPVSGTDDGVSPIVLRYSDVLLMYAEADLFLGTTDGAEKFNMVRR
                     RAFGQPVNAASPYDLPLTLDNIKKERAFEFCGE"
     gene            complement(1462..4770)
                     /locus_tag="VI413_13315"
     CDS             complement(1462..4770)
                     /locus_tag="VI413_13315"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6915648.1"
                     /translation="MKEAKNKRKLHFSRLTLLLVAALFAFVTVSAQTRTVSGVVKDAS
                     GETIIGASVQVKGTKVATITGMDGSYKINVPAEGKTLVFTYVGMEKKEITIAGNVINV
                     SLESSDKSLDEVVVIGYGTQKKRDLTGSVSSVSEKALRDIPVATAAEALTGKLTGVQV
                     TTTEGSPDAEIKIRVRGGGSITQSNTPLYIVDGFAKDDIKDIAPSEIQSVDVLKDASS
                     TAIYGSRGANGVIIITTKSGQQGKISLSYNGFMGMKQVSKTLDVLSPYQFARKQYERA
                     VWGGGTKVANEYEAYFGNYGDIDLYKYIKGTDWQNETFGNIGTTQNHSLALSGGDKKF
                     SYNANFAHIYDKAIMYMSNYTRDNLGLKLKYTPVKWLKLDFATRYAATTINGSGANDQ
                     TGLEKSTNDSRVKSAVVYTPIPLKNLVSQDDDTEATASLYSPIQSTEDNNRYQHNKEF
                     SVNGGITINFNKYLSLNSTFGYTKSNKDDKRFYGLSSYYVREGGAYKRDNATAPVVFL
                     SDINRTTLQNTNVLNFKKENIFEGHNLSVVLGQETLIRTYNYYTRDIEAFTRTYMSAD
                     AWGNLADGTVRPTRPFTAPDYRMLSYFGRLNYDINGKYLFAATLRTDASSKFASGNQW
                     GFFPSGSIGWRISDESFMEDTKDWLSNLKLRGGFGAAGNDNIDDGAFIRSYTSSPSNY
                     LEPDIFSSIYSAGQTLANPDLKWETTVTKNAGLDFGFLNSRLNGSIELYANNTYDALM
                     LVNISGVGYTNQWQNVASTSNNGIELSLNANLFQTKDFTLDFSFNISANQNKVLELGK
                     STIPPFNEAWTSHSEASNSYIVSVGQPVGLIYGFESDGMYSADDFKWTGTSWVMNDIK
                     YTQGDVIGYNPQNEPIYNYKDASGNIFVDNSGIDGLSWGPGAMRLKDTNGDSKITIDD
                     KVLIGNTNPKHFGAFGFTSTYKGFDASVNFNWVYGNQIYNANKIELSAAFYKYRNALA
                     GTVNSYTQIDWETGNRITDAATLTTMNANADIWAAPTGRYATTSWAIEDGSFLRLNNL
                     TVGYTLPGKLTKKFYVQKLRVYASGYNLHTWTKYTGYDPEVDSRRSTPATPGVDYSAY
                     PKSSSYNVGVNITF"
BASE COUNT         1523 a         1111 c          910 g         1580 t
ORIGIN      
        1 ctcaccgcaa aattcaaagg ctctttcttt tttgatatta tccaatgtaa ggggcaaatc
       61 ataaggagat gccgcattga caggctgacc aaatgcacgg cgacgaacca tgttgaattt
      121 ctctgcccca tcagtagttc ccaaaaataa atctgcctca gcatacatta aaagcacatc
      181 ggaataacgc aaaacaattg gcgatacacc atcgtcagtt ccggaaacag gagttttcac
      241 ccactcagca cgccacttag caatattata gccggtaatt cccgaagaaa cagattgttc
      301 catcttacta tcaacagcac tttttgtaac tttataaggc actacagtaa tatcacggcg
      361 ggtatcattt gggttatagt cgtaaaagaa gcttggcata actttaaact gacctccaac
      421 cgatacttta ttgtgaaccc catcagcatc gcgtggcaaa cccaggttat acaacatacg
      481 tccacgaatt cccatgaaat aaggcaattg ccagatagtt tcccggttct gtatatcaat
      541 atcctgacat tgttcataaa agatattttt aaaacttgga tccaacgaat aatgcccatc
      601 ggtaataata tccttacatg cattacgcgc aatggtgtac agttctgtcc tgcgtgcatc
      661 ggacacatta atttttattt ccgaatcatc tgttcctgca ataggacgca tagaataacc
      721 ggcagcagaa aggcaaaccc gtgccaacaa tccccgtgca gcatccttcg acacccgttt
      781 ggtggtagtt gtatatttat gggcagccgg agcagcaagc aaaacagttg ctgactgcaa
      841 atctttaatt atttgattat aaatagtgtc tctgtttgat ttagcaatat aaatagttgc
      901 ctctcttacc ggttcgaaac gggcaggaac atcaccccac catttaacaa ggtcataata
      961 gaaaaatgct ctcatcgtca gagcttcgcc caaaagctgt cccatatcat tgccctcggc
     1021 cggacttcca tatttccgaa taccggcaat ggccagattg gcacgttcaa ttccctggta
     1081 aatacgactc catgggttgg ctgcatcggg attattatag ccgtcaccaa ccgttttgtt
     1141 tggattataa agtgcaaaat aatcatcaga ttttattgaa cttaaaacag ctccggacga
     1201 ccaacctgaa cgatattcaa tgtcagtatt taatcccatt tgcaaccaaa gacggtttcg
     1261 atacgagtta ttttgcccga taatatcgta aatggcagca atgccctggt tcgcagaatc
     1321 gggattcgtg aatacaacat catcgctcaa caacgagtta ctcgacactt gcaggaagtc
     1381 ggaacacgaa gtagataatg aaataataaa aacacctatt atcagtaata ttatactttg
     1441 ctttttcatt gtgatttgat tttagaaggt tatgttaacg ccaacgttgt acgaactact
     1501 tttaggatag gcagaataat caactcccgg agtagccggt gttgaacgac gcgaatctac
     1561 ttcggggtcg taaccggtat attttgtcca ggtatgcaaa ttatatcccg aggcataaac
     1621 tctcagtttt tgcacataaa atttcttggt tagtttacct ggcaaggtat aacccacagt
     1681 cagattattc aatcgcaaga aagaaccatc ttcaatagcc cacgaagtag ttgcatagcg
     1741 accggttggt gcagcccaaa tatcagcatt ggcattcatg gttgtaagtg ttgctgcatc
     1801 agtaattctg ttacctgttt cccaatcaat ttgtgtgtag gaatttaccg taccggcaag
     1861 tgcattacgg tatttgtaaa aagcagcaga caattcaatt ttattggcat tgtaaatttg
     1921 gtttccataa acccagttga agtttaccga agcatcaaaa cccttgtagg ttgaggtaaa
     1981 gccaaatgcg ccaaaatgtt tcggattcgt attaccaatt aaaactttat catcaatggt
     2041 tatcttggaa tcaccgttgg tatctttcaa cctcatggca cccggccccc aacttaaacc
     2101 gtcaatacca ctattatcca caaaaatatt tccactggca tctttgtagt tgtaaatggg
     2161 ctcattttgg ggattatagc caattacatc cccctgagtg tatttgatgt cattcatcac
     2221 ccagcttgta ccagtccact taaaatcatc ggcactgtac atcccatcgc tttcaaagcc
     2281 ataaatcaaa ccaaccggct gacccactga aacgatataa ctgttagatg cttcagaatg
     2341 acttgtccag gcttcgttaa acggaggaat ggttgattta cctaactcca gtaccttatt
     2401 ttgattggcg ctaatattaa atgaaaaatc gagggtaaaa tcttttgttt ggaataaatt
     2461 ggcattcaga ctaagttcaa taccattatt cgatgttgac gctacatttt gccattgatt
     2521 ggtgtatcca acaccgctga tgtttacaag catcaatgca tcgtaagtat tatttgcata
     2581 caactctatc gaaccattca accggctatt caagaatcca aaatccagac ctgcattttt
     2641 ggttactgta gtttcccatt tcaaatcggg gtttgccagt gtttgtccgg cagaataaat
     2701 acttgaaaaa atatcaggtt ccaaataatt ggatggcgac gaagtgtatg aacgaataaa
     2761 ggcgccatca tcaatattat cgtttccggc tgcaccaaaa ccacctctaa gcttcaagtt
     2821 tgataaccag tctttggtat cttccataaa agactcatct gaaattctcc aaccaattga
     2881 cccggaaggg aaaaatcccc attggttacc actggcaaat ttgctggaag catccgtacg
     2941 aagcgttgct gcaaaaaggt atttaccgtt tatatcatag tttaacctgc caaaatacga
     3001 taacatccga taatcgggcg cagtgaacgg ccgtgttgga cgaactgtac catcagctaa
     3061 attaccccat gcatctgccg acatatacgt acgtgtaaat gcttcaatat cccgggtata
     3121 atagttatat gttctgataa gggtttcctg gcccaataca acactcaggt tatgaccttc
     3181 aaaaatattc tcttttttaa agttcaacac atttgtgttt tgcaaggtag ttcggttaat
     3241 gtctgacaaa aacacaaccg gtgctgttgc attgtcgcgc ttataagcac caccttctct
     3301 tacatagtaa gaacttaatc cataaaaacg cttatcatcc ttatttgatt ttgtgtaacc
     3361 aaaagtgctg tttaacgata agtatttatt gaaattgata gtaataccac catttacact
     3421 gaattcctta ttgtgttggt agcggttatt atcttctgta gactggattg gcgaataaag
     3481 acttgcagta gcttccgtat catcatcttg cgaaacaaga ttcttcaatg ggattggtgt
     3541 ataaacaaca gcacttttca cacgtgaatc gttcgttgat ttttcaagtc ctgtttgatc
     3601 atttgcacca gacccgttaa tagttgttgc tgcataacgg gttgcaaaat cgagcttcaa
     3661 ccattttacc ggcgtatatt tcaatttcag accgagatta tcgcgggtat aattcgacat
     3721 atacatgatg gctttatcat atatatgggc aaaatttgca ttataactga attttttatc
     3781 gccaccgctc aatgccaacg agtgattctg ggttgtgcca atattgccaa aagtttcatt
     3841 ttgccagtca gttcctttta tatatttata caaatcaatg tcaccataat taccaaagta
     3901 agcttcatac tcgttggcaa ctttggttcc acctccccat acggctcttt catattgctt
     3961 ccgggcaaat tgatatggcg acaaaacatc cagcgttttg ctcacttgtt tcatacccat
     4021 aaaaccattg taagaaagtg atatttttcc ttgctgcccg gacttggtag taataataat
     4081 tacaccatta gctccgcgcg atccgtaaat agctgtcgaa gaagcatctt tcaacacgtc
     4141 aaccgattga atttcagaag gggcgatatc tttaatatca tcctttgcaa atccatccac
     4201 aatgtataaa ggagtgttac tttgagtgat agaaccgcca ccacgtacgc ggattttaat
     4261 ttcagcatcc ggcgaacctt cggtagtggt aacctgaaca ccggtaagct ttcctgtcaa
     4321 tgcttcggca gcagttgcta caggaatatc cctcaaagct ttttcactta cagaagatac
     4381 agacccggtt agatcacgct ttttctgagt tccgtaaccg attacaacaa cttcatccaa
     4441 tgatttgtct gaactttcta aagaaacatt aattacattg cctgctattg ttatttcttt
     4501 tttctccata cccacataag taaacacgag ggttttgcct tctgccggta cattgatctt
     4561 atacgaacca tccatgcctg tgattgtggc cactttcgtt cctttgacct gtaccgaagc
     4621 gccaataata gtttcgccac tggcatcttt tactactccc gacactgttc tggtctgcgc
     4681 acttacagtt acgaatgcaa aaagagctgc aacgagtaac agcgtcaaac gactgaagtg
     4741 tagctttctt ttgttttttg cttctttcat tgttttttca tgtattagat tattttcatt
     4801 gtttttaatg ataaacacag caaaattata tatttgttcg ttgggggatg ttcaaaaaat
     4861 gacgtttatc ggtggaattt ttgacttata ttacattctg tagcaatttt taattgaatg
     4921 aaaataaaga ctgttgattt gataaacaca taataataaa taacaataac tattcgaaac
     4981 agaaattgta cataacaata catatataac atatccaacc agttacatgt ttggataaaa
     5041 cacacttctt ttctttcatt ttccttttat ttggccggtt ttacaaaata atttatatct
     5101 ttgtgactct tcattcttaa attc
//
LOCUS       DATDNM010000795         3085 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1162895, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000795 DATDNM010000000
VERSION     DATDNM010000795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1162895"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..190)
                     /locus_tag="VI413_13320"
     CDS             complement(<1..190)
                     /locus_tag="VI413_13320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915649.1"
                     /translation="MKKILLTIVASVLLVAFAAAQTISGTYAIQNTVTGKNLRPYEAG
                     NQNGNRIVSYNHVEWKCMT"
     gene            complement(589..2469)
                     /locus_tag="VI413_13325"
     CDS             complement(589..2469)
                     /locus_tag="VI413_13325"
                     /inference="COORDINATES: protein motif:HMM:TIGR02145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibrobacter succinogenes major paralogous
                     domain-containing protein"
                     /protein_id="HEY6915650.1"
                     /translation="MTKLETSYKTGITIILFILFSNSCDKAVDPVLLPEITTIEVSNI
                     TESSVLSGGTITSDAGNQITSRGVCWSTNPNPTIADSITKDAAGTGRFVSKINSLLPN
                     TTYYLRAYATNKKGTGYGLQETFTTKSLGLLTKQITEITLNSAKTGGNIEIPGDSSSI
                     IERGICWSTQASPTIQNFKSANGKGTGEFTCTLTELTANTIYYVRAYATNGNGTHYGN
                     EINFKTKIGIVSATTTSATNITPNSATSGGNITEIGGNSVSERGVCWSTSPNPTIADP
                     KSSDGNGVGSFTSSLTGLKNSTKYYVRTYATNIDSTYYGNEVSFNTLSGIITISSTAA
                     SNISGTTAKFGGYISAVGGSSIIESGICYSSNINPTIDDNKISTTNKSIGTYSATASG
                     LTPNTTYYFRAYATNSVGLYYGNELSFKTTSIVTDADGNVYNTVTIGTQTWMVENLKT
                     TKYNDGTSIPLVANASSWSTSTTPAYCWYANDAANKNKYGALYNGYAISTGKLAPTGW
                     HIATDAEWTTLENYIGVNTGKSGTVTKALSATTDWTTSTSPGAIGNDLSINNSSGFTA
                     LPGGIRDNTGIYDMVGTDCYYWTSTGTTTLSYRNFNYQKYTITKNTKARNFGYSVRCI
                     KD"
BASE COUNT          872 a          553 c          590 g         1070 t
ORIGIN      
        1 aggtcatgca cttccattcc acatggttat acgatacaat tctgttcccg ttctggtttc
       61 cggcctcata aggcctgagg tttttacccg ttacggtgtt ttggatcgca tacgttccgc
      121 ttatggtttg ggcggcggca aaggcaacta acagaacgct tgccacaatt gtcaggagta
      181 tttttttcat cgggttaata aatttgtatg attagtattg agtggacaaa tataggtttt
      241 atttttcaat gaatgcacaa atagcatttt gtcactcact tatcactcta aaaacatcct
      301 gtaagctatc ttttaaatcc gctgtcgcat gtttcagagc gttcaacctg tcttttggag
      361 ggtacatcct atgttttaga gcatgcatct gatgttttag aaggtatatc tcatcaaaaa
      421 gacagggtag gggatgtttt agagggtgta accaaaaaaa ctccccgata cgcaacagca
      481 tatcggggag tttctgtttt atcatattca cagggtgact ctaagtcagc ctgtgaatag
      541 agaagaagaa ttatttcgcc atttcaataa ccataacatg tatagatgtt aatccttgat
      601 gcaacgaact gaataaccaa aattccttgc tttggtattt ttggttatag tatatttttg
      661 atagttgaaa ttcctgtaac ttaaagtagt agtacctgta gatgtccaat aataacagtc
      721 agtaccaacc atatcgtaaa ttcctgtatt atcgcgaatg ccacccggca aagccgtaaa
      781 accggaactg ttattaatag ataaatcatt tccaatagca cccggagaag ttgaggttgt
      841 ccaatctgta gttgctgaca atgctttagt aacggtaccc gatttacctg tgttaacgcc
      901 aatgtaattc tcgagagttg tccattctgc atctgttgca atgtgccaac ctgtaggggc
      961 taacttgcct gtgcttattg catagccatt atacaaagct ccatacttgt ttttattggc
     1021 tgcatcgttg gcataccaac aatatgcagg agttgtagaa gtagaccagg atgaagcgtt
     1081 tgctaccaaa ggaatggaag tgccatcatt gtacttcgtg gttttaagat tctcaaccat
     1141 ccatgtttgt gtgcctatag taactgtatt ataaacattg ccatcagcgt cagttactat
     1201 ggatgtagtt ttaaaactga gttcgtttcc ataatatagt cctacactat ttgttgcata
     1261 agcacgaaaa tagtaagtag tgttgggcgt taatccactt gccgttgcag aataagtgcc
     1321 tatgctctta ttagttgttg atattttgtt gtcatcaatt gtaggattaa tattgctgct
     1381 atagcaaatt ccactttcaa ttatggaaga acctccaact gctgatatat acccgccaaa
     1441 tttagcggtt gttccgctaa tatttgatgc tgcagtagac gaaatggtaa taattccact
     1501 taatgtatta aaactgactt catttccata gtaggtacta tcaatatttg ttgcatatgt
     1561 ccgaacataa tattttgtac tattttttaa tcctgttagt gaagatgtga atgatccaac
     1621 tccatttcca tcgctcgact ttgggtctgc aatagttgga tttggtgaag tactccagca
     1681 aacacctcgt tcgcttaccg agtttcctcc aatttcagtt atattgcctc cgcttgtggc
     1741 tgaatttggt gttatattgg ttgcagaagt tgttgttgca ctaacaattc cgatttttgt
     1801 tttaaaatta atttcattgc cgtagtgcgt tccgtttccg tttgttgcat acgcacgaac
     1861 ataataaatc gtatttgcgg ttaattcggt taatgtgcag gtaaactcac cggtaccctt
     1921 accatttgct gacttgaaat tttgaatggt aggcgatgcc tgcgtgctcc aacaaatacc
     1981 tcgttcaata atacttgaac tatcacccgg tatttctata tttccaccgg tttttgcaga
     2041 gtttaatgtt atctctgtaa tttgcttggt aagtagtcct aaagattttg ttgtaaatgt
     2101 ctcttgcaaa ccatacccag ttcctttttt gttagttgcg tatgctctta aatagtaagt
     2161 tgtattcggc aacagactat ttattttact tacaaaacgg ccagtgcctg cagcatcttt
     2221 agttatgctg tcggctatag ttggatttgg atttgtgctc cagcaaacac ctcttgaagt
     2281 tatttggtta ccagcatcag aagtaatagt tcccccacta agaacagaac tttcggtaat
     2341 atttgatact tcaatcgtag ttatttcggg taatagaaca gggtcaacag ctttatcaca
     2401 actgttactg aacaggataa ataaaattat cgtaatcccg gttttgtaag atgtttctaa
     2461 ttttgtcatt ttaagttttt gttatgtcat tatatggttt gtaagaaaaa taaattcgca
     2521 aaagtatttg taaatgctta aattcaatgt aaatgattac aaatatactt gattttattt
     2581 tatgatttat atattaaaat atgttgttta atataaatgg cgtatcaata attaaatgaa
     2641 agtgcatttg atctgtcaaa gtgaatttga ttaaacaata aactccccga tacgcatctg
     2701 catatcgggg agtttttgtt agcataaaat ataataactt aaaaatatcc tctaaaaacg
     2761 ttaacattag attgtctttt aattcttctc cgaaaattat ttttacattt gccggcatgt
     2821 taattagttt aaaattccgt tgaccagtga ccagccgcga aggcgaaatt ttataattga
     2881 ttgtacggaa tttaatttta ggtatcgcaa agttgcagca tggtttccga agcttcggat
     2941 gtgttgtcgc aaaactgcgg gaaggtttcc gaacttcgga cggagtgtta caaagttgca
     3001 tcgttaaatc cgaagttcgg atggcttgtt gcaaagttgc ttggttaaat ccgaacttcg
     3061 gatggtctgt tacaaacctg cttgg
//
LOCUS       DATDNM010000796         3098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1590420, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000796 DATDNM010000000
VERSION     DATDNM010000796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3098
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1590420"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(559..2985)
                     /locus_tag="VI413_13330"
     CDS             complement(559..2985)
                     /locus_tag="VI413_13330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005831615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding domain-containing protein"
                     /protein_id="HEY6915651.1"
                     /translation="MTYNRLKPLKSFFTLSFSLVFSLAIVAQDSAGQRNQLFDFDWKF
                     NLGDTPEARTFNYNDAAWRRLDLPHDWSIEGEIELNNPMKGAGGYFPAGIGWYRKTFD
                     VPANWQGKCVSIYFEGVYMNSEVFINGKSVGVHPYGYTSFNYDLTSFLLPGKENVIAV
                     RVDNSQQINCRWYSGSGIYRHVWLNVTNPVHVAQWGTYITTPEVSTAKATVQIKTLVK
                     NETGHLQNIVVSAKLTDKSKKAAGSNEQTVELQPNSEKEVIQTITVNNPGLWTPETPV
                     LYDAQTTITQNNNVLDKTQNSFGIRSLKFSAEKGFQLNGKTVKINGGCVHHDNGCLGA
                     VAYDRAEERRVQLMKEAGFNAVRTSHNPPSEAFLNSCDRLGLLVVDEAFDGWKASKNP
                     HDYSTLFNGWWQRDMEAMLLRDRNHPSIIMWSIGNEIIERTKPEAVETAKMLAACAHK
                     NDPTRPVTSAMTTWNEGWVVFDSLMAAHDVCGYNYQLHEAKKDHQRIPSRVILQTESY
                     PREAFKNWNAVQTQDYVIGDIVWTALDYLGESGIGRWYYPDEPKGEHWERDFFPWHGG
                     YCGDVDLLGWRKPISHYRNLLWNDTEKLYMAVKEPNPDNGLIKETMWSVWPTWESWTW
                     PGREGKEMQVEVYSKYPNVRLYLNNQLVAEKPTGKAKEFKVVFTLPYAGGVLKAVGVI
                     DNKEIESKILKTAGVPAKIVLKPDRRKLHANGQDLSFVIVELTDANGNLQPNAENQLT
                     FNVDGAGVIAGVDNARLNDPDTYVSNTRKAWKGRAMVVVKSTRNTGNIKLTVSSPGLP
                     DAVSIIKAVR"
BASE COUNT          820 a          733 c          594 g          951 t
ORIGIN      
        1 caacctccga aatattcaac gaattatttg aaagtagctg ttgtgcaata tcaatattca
       61 aaggatacat gaatcaattg ggtttattta atggaatttt tttatttgca ttttaacgat
      121 agtcaattct aaaaaacgga atacaaaaat ataattcagg catttgtaaa tccgactcat
      181 tttcgtcaat ttcacactat aaattctgca aattctcatt tatatatttg aaatcatgtt
      241 tttagcattt tttggacagc taatagttta aagaacataa gatcgattgc acaattatct
      301 tacccgaaaa tctcagtgta gtatttcttc atcataccta ctgatgcggt cgcatcagac
      361 ccacttcata gcccgatgaa gacacactga tgcgaacgtt gaagttaccc tgatgaatac
      421 ctttcatcta ttacaccttt tagtatttat aaaatcaccc atatcattcc acattatcaa
      481 caaaattaaa aacaaacgag ggtttccatt tagcaggaaa ccctcgtttg ttttttggat
      541 tgaaaaatct tcttaattct atcttacagc tttaataata ctcactgcat caggtagccc
      601 cggactactt actgtcagct ttatatttcc ggtgttgcgc gtacttttga caaccaccat
      661 cgcacggcct ttccaggctt tacgggtgtt gctcacgtag gtgtcagggt cgttgaggcg
      721 cgcattgtca acaccggcaa tcactcccgc cccatccacg ttgaaggtga gttgattttc
      781 ggcattgggt tgcaggttgc cgttagcatc tgttaactct acaatgacaa atgacaaatc
      841 ctgcccgttg gcatgcaact tcctgcggtc gggttttagt acgattttag caggcacacc
      901 ggcggtcttc aaaatttttg attctatttc cttattatca attactccca ctgccttcaa
      961 tacccctccg gcataaggca atgtaaaaac cactttaaac tccttagctt ttcccgtcgg
     1021 cttctccgca accaattgat tattcaaata caatctcaca tttgggtatt ttgagtatac
     1081 ctccacctgc atttccttgc cttcgcggcc gggccaggtc cagctttccc aggttggcca
     1141 caccgaccac atggtttctt ttatcaatcc gttatcggga tttggctctt taacggccat
     1201 gtagagtttt tcggtatcgt tccacaacag gtttcgataa tgcgaaatag gtttacgcca
     1261 cccaagcaag tccacgtcgc cacaataacc tccatgccat ggaaaaaagt cacgttccca
     1321 gtgttcgcct ttcggttcgt cggggtagta ccaacgtcca atacccgact cacccaggta
     1381 atcgagcgct gtccacacaa tgtcaccaat aacatagtcc tgcgtttgta ccgcattcca
     1441 atttttaaaa gcttcgcgcg ggtacgattc tgtttgaaga ataacacggg aaggtatccg
     1501 ttggtggtct ttttttgctt cgtgcaactg gtaattatat ccacacacat cgtgagctgc
     1561 catcaacgaa tcgaacacca cccaaccttc gttccaggta gtcatggctg aggtaaccgg
     1621 acgtgttggg tcgtttttgt gcgcgcaggc cgccagcatt ttagccgttt ctaccgcttc
     1681 gggtttggtt cgttcaataa tttcgttgcc aatgctccac atgataatgg aagggtgatt
     1741 gcggtcgcgc aacaacatgg cttccatatc gcgttgccac cagccattga aaagtgtaga
     1801 atagtcgtgt ggattcttgc tggctttcca accatcaaaa gcttcgtcaa ccaccagcaa
     1861 acccaagcgg tcacaggaat tcaggaaagc ctccgaaggc ggattgtgcg aagtacgtac
     1921 ggcattgaat ccggcttctt tcatcaattg caccctacgc tcttcggccc gatcataagc
     1981 tacagctccc aaacacccgt tgtcgtggtg cacacatcca ccgtttattt tcaccgtttt
     2041 gccattcaac tgaaaacctt tttcggcact gaattttagg gaacgaatgc caaaactatt
     2101 ttgagtttta tccaacacat tattgttttg agtaatggtt gtttgtgcat cgtacaaaac
     2161 gggtgtttcg ggtgtccaga gcccgggatt atttacggtg atagtctgaa tcacttcttt
     2221 ttccgaattc ggttgaagtt ctaccgtttg ttcattacta cctgcagctt ttttcgattt
     2281 atcggtcagc ttagctgaca ctacgatatt ttgtagatga ccagtttcat ttttcaccag
     2341 tgtttttatt tgaacagttg ctttggcagt gcttacttct ggagtagtaa tataagttcc
     2401 ccattgtgct acgtgaacag ggttcgtaac attgagccac acatgacgat aaatgcccga
     2461 accactgtac caacggcagt taatttgctg agaattatct acacgaacgg caataacatt
     2521 ctcttttccg ggcagaagaa acgatgtcag gtcataattg aaagaggtat aaccataagg
     2581 gtgaacaccc accgatttgc cattgataaa cacttcggaa ttcatatata caccttcgaa
     2641 ataaatggaa acacattttc cttgccaatt ggcaggcaca tcaaatgttt tgcggtacca
     2701 accgatacct gccggaaaat atccaccggc acctttcatg ggattgttga gttcaatttc
     2761 tccctcaata ctccaatcat gcggcaagtc cagtcttcgc catgcggcat cgttatagtt
     2821 gaaagttcgt gcttcaggcg tgtcgccaag gttgaatttc caatcaaaat caaatagttg
     2881 gtttctctgc cctgcactgt cttgcgctac gatcgccaaa ctaaaaacca gtgaaaaaga
     2941 caatgtaaaa aaggacttca acggctttaa tctattgtat gtcatatgtt cctgaattag
     3001 ttatttagta atttcttgta ttgcgtttat gtttggagcc acaagcacat caactccttt
     3061 ggcagtcata atcacaggtt tgtacaagct attttcgt
//
LOCUS       DATDNM010000797         2300 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1697724, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000797 DATDNM010000000
VERSION     DATDNM010000797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2300
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1697724"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1072
                     /locus_tag="VI413_13335"
     CDS             <1..1072
                     /locus_tag="VI413_13335"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY6915652.1"
                     /translation="ERRLNYYISQIGSKEKVEEYFKLNISELREKLRDMARDQQTIQQ
                     MQQKLVGDIKSTPADVRRFYNQLPADSIPAVPAEVELQIISFEPPVPMDEVNRIKERL
                     RDFTERVNSGTSDFAVLARLYSEDTESAKRGGELGFMGRGQLVPEFSSVAFNLLDPKK
                     VSRIVQTEFGYHIIQLIEKRGDRINCRHILLKPRVSLAEKTKAIHVLDSISNQIRADK
                     MTFEQAVMSFSQDKNSAMNAGLMLNDKNNTSKFEYQDLPAEVGKVVYGMNVGEISKPF
                     TMINASTNKEVVAIVKVKSKIENHKANLSDDYQMLKTFFEGKKKQEFLTNWIIKKQKE
                     TYISIDPKWQDCKFQYPGWVKK"
     gene            1134..>2300
                     /locus_tag="VI413_13340"
     CDS             1134..>2300
                     /locus_tag="VI413_13340"
                     /inference="COORDINATES: protein motif:HMM:NF024500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OstA-like protein"
                     /protein_id="HEY6915653.1"
                     /translation="MKSKLNNSVIKHRHVVFFGVLCLFIVVLQAQIRPKQLRKEVLQS
                     QAPVKPVQKAKKGKRLGNTFGKPFSPMKPLAPIISPLDIRGVSLVYLENSETLSFDKV
                     TSPDIQILKGNVRFRHDKALLYCDSAYFYEKANSLDAFGNVKIVQGDTLFVYGDVLFY
                     DGNIKLARMRRNVRMENRKTTLTTDSLNYDRITNLAYYYTGGKITDQENVLTSIWGQY
                     STATNDALFKKDVRLDNKSFKLDADSLKYNTKTHIANFIGRTHILYNDETDIYSNRGW
                     YNTTTERSMLLDRSLVKHKDGKTLIGDTIFYDKKQKYGEGFSHVIMNDTVQKSTLYGN
                     YSYYSDATKIGMASDSALLVDWSSKDTMLVHADTLFTSKDSVFDVARGYYHVRFY"
BASE COUNT          722 a          422 c          511 g          645 t
ORIGIN      
        1 ggaacgacgc ctgaattact atatttccca aatcggatcg aaagagaaag tggaagagta
       61 ttttaaattg aatatttccg aattgcgaga aaaactgcgc gatatggctc gtgaccaaca
      121 aacaattcag caaatgcaac agaaactggt gggtgatatt aagtcgactc cagctgatgt
      181 ccgccgtttt tataaccaac ttcctgctga tagtatccct gctgttcctg cggaggttga
      241 actccaaatc atcagttttg aaccaccggt gccgatggat gaggtaaatc gtatcaaaga
      301 acgcttacgt gatttcaccg aacgtgtaaa tagtggaacc agcgattttg cggtgttggc
      361 ccgcctttat tctgaagata ctgaaagtgc caaacgtggt ggtgaacttg ggttcatggg
      421 tcgcggacaa ttagtgccgg aattttcgtc agttgctttc aatttgcttg atcctaaaaa
      481 agtttcgcgc attgtgcaaa cagaatttgg ttatcacatt atccagttga ttgaaaaaag
      541 aggcgaccgg atcaattgcc gtcatatttt attaaagcca cgtgtgtcgc tggcagaaaa
      601 aacaaaagca attcatgtgc ttgactctat ttccaaccag atacgtgccg acaaaatgac
      661 ttttgagcaa gctgtaatga gcttctcaca agataaaaac tcggctatga atgcaggttt
      721 gatgctgaac gacaaaaata atacgtctaa gtttgaatac caggatctcc ctgccgaagt
      781 tggaaaggtt gtttatggaa tgaatgtggg tgaaatttcg aaaccgttta cgatgattaa
      841 tgcatcgaca aataaagaag tggttgctat tgtaaaggtg aaatcaaaaa ttgagaatca
      901 taaggctaat ctttctgacg attatcaaat gcttaaaacg tttttcgaag gtaaaaagaa
      961 acaggagttc ctgactaact ggatcattaa gaagcaaaag gaaacttata tcagcatcga
     1021 tcccaaatgg caggattgca aattccagta tccgggatgg gttaagaaat aaattggcag
     1081 ttgatagttg acagcttctt tttttgaaat aaatttatca attacacatt tcattgaaat
     1141 cgaaattaaa caattcagta attaaacaca ggcacgtcgt atttttcggt gtgctgtgtt
     1201 tgtttattgt tgtattgcaa gcgcaaatac ggcctaagca attgcgtaag gaagtattgc
     1261 aaagccaggc gccggtaaag ccagtgcaaa aagctaaaaa agggaaaagg ttgggcaata
     1321 cttttggtaa accattttcg ccaatgaaac cgctggcacc tattattagt ccgcttgaca
     1381 taaggggagt ttctttggtt tatctcgaaa attcagaaac tctgtcattc gataaggtaa
     1441 caagtcctga tattcagatt ttgaaaggta atgtccgttt cagacatgat aaagcattgt
     1501 tgtattgcga cagtgcatat ttctacgaaa aagccaactc gcttgatgcg ttcgggaacg
     1561 ttaagattgt gcagggcgat acgctttttg tgtatggcga tgtattgttt tacgatggaa
     1621 atattaaact ggcacgtatg cgacgcaatg tgcgaatgga aaaccgcaaa acaaccctga
     1681 ctacggacag tttgaattat gaccggataa cgaatctggc ctattattac accggtggaa
     1741 aaattacgga tcaggagaat gtccttacat ctatttgggg gcaatattcc acagcaacta
     1801 atgatgcgtt gtttaaaaaa gacgttcgcc tggataataa gagcttcaag ttggatgcag
     1861 actcgttgaa gtataacacc aagacgcaca ttgccaattt tatcggacgt acccatattt
     1921 tgtataatga cgaaaccgat atttacagca accggggatg gtacaacaca acaaccgaac
     1981 gttccatgtt gctcgaccgc tcgttggtaa aacacaaaga tggtaaaacg ctgattggag
     2041 atactatttt ctacgataaa aaacaaaagt acggtgaagg cttctcgcat gtaattatga
     2101 acgatactgt tcagaagtcc actttgtacg gaaactacag ttattacagc gatgccacta
     2161 aaataggtat ggccagtgac tcggcccttt tggtggactg gtcgagcaaa gataccatgc
     2221 tggtacatgc cgatacgctc tttacttcaa aagattctgt ttttgatgtg gcgcgtgggt
     2281 attaccatgt tcgtttttac
//
LOCUS       DATDNM010000798         2023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_416448, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000798 DATDNM010000000
VERSION     DATDNM010000798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416448"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..258)
                     /locus_tag="VI413_13345"
     CDS             complement(<1..258)
                     /locus_tag="VI413_13345"
                     /EC_number="4.2.1.53"
                     /inference="COORDINATES: protein motif:HMM:NF024842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050151 - oleate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oleate hydratase"
                     /protein_id="HEY6915654.1"
                     /translation="MKYDAIVVGGGIAGLTAAAYLARAGQSVVLFEKQSKVGGLVQTF
                     QREGIYFDGGLRSIENSGIVFPMLKQLGIDIEFLKSSISIGI"
     gene            complement(248..1192)
                     /locus_tag="VI413_13350"
     CDS             complement(248..1192)
                     /locus_tag="VI413_13350"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6915655.1"
                     /translation="MSKKFEFPPELDFVRTGRLLQKVSTESMEGKVCVITGTTSGVGY
                     QAAIRLAKAGAKIVMIVRNKEKAEKLCAQIRSFSNHEPYYFLADFTNLSEVRKAVEAI
                     LAHYPHIDVLVNNAGVHMTTRHLTADGYETAFAVNHLASFLITSLLLKRMVESAPSRI
                     IQVNSEGHRFNGLKIDDLNWEKRKYGGYGGYGASKTAQLMTVWELNDLLQGKGVTINA
                     MHPGAVKSNIGTNNGKLYNCISRYLIQPTLKNPEISGEAIYYLASSPEMEGVSGKFFN
                     LTNEEIPAPHTQNRELGKQIFELSKKLIHLDKEDVYEV"
     gene            complement(1192..1644)
                     /locus_tag="VI413_13355"
     CDS             complement(1192..1644)
                     /locus_tag="VI413_13355"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY6915656.1"
                     /translation="MKEDVTLKPINTDIIKELWSKTYNTEGKPDWSHIFPYYHKDIIF
                     QDTIQRIEGIEDFTAMCNRLTKRTNQLQMEIVSIAQNGNIIIFDWIMTMIFKKYPSTP
                     IYGSTKLTISNDGLILEQRDYYDLWGDIFNNIPHWNKMYRRFLIKKFG"
BASE COUNT          591 a          420 c          378 g          634 t
ORIGIN      
        1 aatcccaatt gatatactac ttttgaggaa ttcaatatca attcccaact gtttgagcat
       61 gggaaaaacg atgcctgaat tttcaatcga acgcaatccg ccatcgaaat aaataccttc
      121 acgctgaaag gtttgtacca atccgccaac ctttgattgc ttctcaaaaa gcacaaccga
      181 ttgacctgcc cgggccaggt aggcggcagc cgttaagccg gcaattccac cgccaactac
      241 aatagcatca tacttcataa acgtcttctt tatcaagatg gattaatttt ttgctgagct
      301 caaaaatctg tttgccaagt tccctgtttt gggtatgcgg agccggaatt tcttcattcg
      361 tcaggttgaa aaacttgcca cttacacctt ccatttcggg cgaagaagcc agataataaa
      421 tagcttcacc cgatatttca ggatttttca gcgtgggctg aatcaggtaa cgcgaaatgc
      481 agttatataa tttgccgttg ttggttccaa tgtttgattt tacggctccg gggtgcatgg
      541 cattgattgt aacgcctttt ccctgcagca aatcattcag ttcccaaaca gtcatcaact
      601 gagccgtctt cgaagctcca tagcctccgt accccccgta tttccgcttt tcccagttca
      661 ggtcatctat tttcaatcca ttgaaacgat ggccttcaga atttacctga ataatgcgcg
      721 atggtgcgct ttccaccatt cgttttagca acaggctggt aattaaaaac gaagccaaat
      781 ggtttaccgc aaaggcagtt tcgtatccgt ctgcggtgag atgccttgtg gtcatgtgca
      841 cgccggcatt atttaccaac acatcaatgt gtggataatg ggccaaaatg gcttctacag
      901 ctttccgtac ctcgcttaaa ttggtaaaat ccgccaggaa ataatacggt tcatggtttg
      961 aaaatgatcg tatttgtgca caaagttttt ctgctttttc tttattcctg actatcatca
     1021 caattttagc cccagctttg gccaaccgaa tagcagcctg ataaccaact cccgaagttg
     1081 tgccggttat cacgcatact tttccttcca ttgattcggt tgaaactttt tgtagaaggc
     1141 ggcctgtacg cacaaaatct aattccgggg gaaattcaaa tttcttgctc attatccgaa
     1201 ttttttaatc aaaaacctgc gatacatttt attccaatgc gggatattat tgaaaatatc
     1261 gccccataaa tcgtaataat cccgctgctc aagtattaaa ccatcattgc tgatagttaa
     1321 ttttgtagag ccataaatgg gagtgctggg atatttttta aatatcatgg tcattatcca
     1381 atcgaaaata atgatgttgc cgttttgagc aatggataca atttccattt gcaattggtt
     1441 tgtacgcttc gtaagccggt tacacatggc cgtgaaatcc tcaattcctt cgatgcgctg
     1501 tatggtatcc tgaaaaatga tatccttgtg gtaatacgga aaaatatgcg accaatcggg
     1561 tttaccttcc gtgttgtagg ttttcgacca caattctttt attatgtcag tattgatagg
     1621 ttttaatgta acatcctctt tcatatgcga tttaaagtat ggtgataaca ggaaatctta
     1681 attacatgca tgacaaagat aaaaattatt cagaataaaa aacataattt tttttattaa
     1741 actaaaagaa atattctttc tgtatcagac tattaattta ccggatttaa gttgagttgt
     1801 gttgtggaaa ttcaaaacaa aatctgtaaa gtatttgtta gttatcgttg taaataacaa
     1861 cctaactaaa tataaaaaac agcaattatg agtacatcac atgtttatcc gggagcagct
     1921 accttgagtg cgtacatcac cataaaagga tgcagcgatg caattgaatt ttataaaaaa
     1981 gcgtttggcg ccaaagaaat tggcagatta ttgatgcccg atg
//
LOCUS       DATDNM010000799         2006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1485450, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000799 DATDNM010000000
VERSION     DATDNM010000799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1485450"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VI413_13360"
     CDS             <1..244
                     /locus_tag="VI413_13360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006948904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEY6915657.1"
                     /translation="VKNGLLTDTSYCNIALYDGQNWFTPRVPLLYGVNRAELLLEEKL
                     IEKDIAVEELKSYEKIALFNAMIEFGEVVLDIDKIF"
     gene            complement(328..>2006)
                     /locus_tag="VI413_13365"
     CDS             complement(328..>2006)
                     /locus_tag="VI413_13365"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6915658.1"
                     /translation="FLLIVCIKSLIDNLTTSFAFNSSQKITFISLLILTALIFLAGGI
                     LTEVRTYFSEKLSQSITRRIYKKLHKKHASLDLSHYENPAEQDKIHRAVQEASFRPIK
                     IINELLTCIKSVAAALFLAGLFVAIKWYLVVILIIAIIPGVYLRLKFSRKLYKLKESQ
                     STKEREMYYYNRVLTGFPFAKEMKLFGFFDFFKQRFNHVQENLFEQKITLRKSELWLN
                     IFAQIFAVVLIFISLGFVSFLKLNGEISIGTVVLFFFAFQRGYSVLNELFRSMTQILE
                     DNTFLNDFTDFLNMPTSSNEVKNNHSQFSLQKEIRIENVGFRYATSKRDALKSINITI
                     PAGKTVAFVGANGSGKTTLIKLLCGFYQPISGQILFDNVDSALIGQNTVCKNITAVFQ
                     DFALYNIPAIENLGLGDINTPIDLNRAKKAAQAAGIDDVLERLPDGYNTLLGNLFKGG
                     EELSIGQWQKMAIARAFYRDSPLILMDEPSSALDAEAELQIIDSLKKLSHKKTAVIIS
                     HRLTTVQWADLIYFFHNGEVVESGNHKELMALEGKYFKLFQTANNRLGQE"
BASE COUNT          597 a          379 c          401 g          629 t
ORIGIN      
        1 ggtcaaaaat ggtttgttga cagatacatc ctattgtaat attgctcttt atgatgggca
       61 aaactggttt actcctcgtg ttcctttgct ttacggagtg aatcgggcag agttattgct
      121 ggaagaaaaa ttgattgaaa aagatattgc ggttgaagag ctaaaaagtt atgagaaaat
      181 tgctttattc aatgccatga ttgagtttgg cgaagtggtg ctggatattg acaaaatatt
      241 ttgactgggt ctcgcggttt gcaaccgcga tattagcttt aacaacgcgg ttacaaaccg
      301 cgaaacccga atgcaattta tttaaattta ctcctgtccc aacctgttat ttgccgtttg
      361 aaacagcttg aaatacttcc cttccaaagc cataagttct ttatggttgc ccgattcaac
      421 cacttcgccg ttatgaaaga aataaattaa atcggcccat tgcacggtag tgagccggtg
      481 gctaatgatg acggccgttt ttttgtggga tagttttttt aaactatcaa taatttgtag
      541 ctcagcttcg gcatccaagg cactcgaagg ttcatccatc aggattaaag gcgaatcgcg
      601 ataaaaagcc cgcgcaatag ccattttttg ccattggccg atacttagtt cttcacctcc
      661 tttaaagaga tttcccaata acgtattgta tccatccggc aaacgctcaa gaacatcgtc
      721 aattcccgcc gcctgagctg ctttttttgc tctattcagg tcaattggag tgttgatatc
      781 tcccaatccc agattttcaa tggccgggat gttgtaaagc gcaaaatcct gaaataccgc
      841 cgttatattt ttacaaaccg tgttttgtcc tattagtgca gaatcaacat tgtcaaaaag
      901 aatttggccg gaaataggtt ggtagaaacc gcaaagcaat tttatcagtg ttgtttttcc
      961 cgatccgttt gccccgacaa aagctaccgt ttttcctgcc ggaatggtta tgttgattga
     1021 ttttagtgca tcgcgtttgc ttgttgcata gcgaaaaccg acattctcaa ttctgatttc
     1081 tttttgcaat gagaattgag agtgattatt ttttacttca ttcgaacttg ttggcatatt
     1141 caggaagtca gtgaaatcat tcaggaaagt gttgtcttcc agaatctgag tcatcgaccg
     1201 gaataattca ttcaaaacag aatatccgcg ctgaaaggca aagaaaaaca acacaactgt
     1261 tccgatggaa atctcaccat tcagcttcag aaacgaaaca aaacctaatg atataaatat
     1321 caatacaact gcgaaaatct gagcaaaaat attcaaccac agttccgatt tgcgtaacgt
     1381 tattttttgt tcaaataaat tttcctgaac atggttaaac cgttgtttaa aaaagtcgaa
     1441 gaatccaaac agcttcattt cttttgcaaa cggaaatccg gtcagaaccc ggttgtaata
     1501 atacatttcc cgttcttttg tactctggga ttctttgagt ttgtatagtt ttcttgagaa
     1561 tttcagccgc agatatacac cgggaataat ggcaatgatc aatatgacaa ccaaatacca
     1621 tttgatggca acaaataatc ctgctaaaaa taaagctgcg gcaactgatt ttatgcatgt
     1681 aagcagttcg ttgataattt ttatgggacg aaatgatgct tcttgtacag ctcggtgaat
     1741 tttgtcctgt tcagccggat tttcgtaatg cgacaagtct aatgacgcat gtttcttgtg
     1801 gagtttctta taaatccggc gtgtgatgga ttgcgataat ttttcggaaa aataggttct
     1861 gacttcggtg agaattccgc ctgcaagaaa aattaatgcc gttaagataa ggagtgaaat
     1921 aaacgtgatt ttctggctgc tgttaaaagc aaatgaagta gttaaattgt ctatcagcga
     1981 tttgatacat acaattagca aaaagg
//
LOCUS       DATDNM010000800         2195 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1697911, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000800 DATDNM010000000
VERSION     DATDNM010000800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1697911"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..221
                     /locus_tag="VI413_13370"
     CDS             <1..221
                     /locus_tag="VI413_13370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915659.1"
                     /translation="TGFVDGDKTYPSLGDFARDGEWHEIEIPMSTFKTMGLSYSNFVS
                     DPNIISFLSGGVTGKTLDLDAVFIYKKQ"
     gene            330..1400
                     /locus_tag="VI413_13375"
     CDS             330..1400
                     /locus_tag="VI413_13375"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 16 glycosylhydrolase"
                     /protein_id="HEY6915660.1"
                     /translation="MKITVSILAIIFTSIGFLSCNPVEPEVKATGISLDKTELTLVQG
                     DSVTLTAAVLPAKAKPVVVWSSSNEKVATVVNGKVKTLARGTATIKVTADSVFSATCA
                     IVVTHEDLPYQLVWSDEFDGPALDLTKWSYETGGGGFGNQEKQYYTNRPENIRVENGS
                     LIIEAKKESYNGNNYTSARINSKDKVSFTYGRMEARISLPVGKGTWPAYWMMGSNITA
                     VRWPLCGEIDIMEHVGSKPTMISHAVHTSEKNGSKGNNWYSQKTVAGVENEYHTYAIE
                     WEEKANEGDDNMSFLIDGVKSATIWEQHVNSTVKMWPFKSDFYFLLNLAIGGTMGGTV
                     DDAIFNNPVLMKVDYVRVYQRK"
     gene            1552..>2195
                     /locus_tag="VI413_13380"
     CDS             1552..>2195
                     /locus_tag="VI413_13380"
                     /inference="COORDINATES: protein motif:HMM:NF023218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY6915661.1"
                     /translation="MFLKRITHIKYTTFRNLLLSGIVLAAFACSTEEPQQQVTEVHQQ
                     RSPKRGVSYNFSILDDTKLLSPGVSWFYNWGPDVSSSLNVAITDGKIDFFPMAWNGAF
                     DATRIRNYKAAHPECEYILGFNEPNLTDQANMTPTVAAQKWVPLAALAKELNMKIISP
                     AMNYGTLAGYGDPIVWLDEFFTKVPLSEIDGIAIHCYMGNAGALASYVKRFKKYG"
BASE COUNT          639 a          434 c          505 g          617 t
ORIGIN      
        1 caaccggatt tgttgatgga gataaaactt acccttcact tggtgacttt gcacgtgatg
       61 gagaatggca cgaaatagaa atacctatgt caactttcaa aacaatggga ttgtcatata
      121 gcaattttgt ttcagatccg aatattatat ccttcttgag cggcggggtt accggtaaaa
      181 cattggactt ggatgcagtg tttatctaca aaaaacaata atctctgaat aacttaagtg
      241 tagcgggttt gaatgtatcc gctacgctac attgaattgc gggtgtaatt cgtatctttc
      301 tttaattttt gaaacacata agtcttttta tgaaaattac cgtaagcatt cttgccatta
      361 tatttaccag cattggtttt ctttcctgca atccggttga acctgaagtt aaggcaacgg
      421 gcatcagcct ggataaaacg gagctaacct tggttcaggg tgattctgtt acactgaccg
      481 ctgccgttct tcctgcaaaa gccaagccgg ttgttgtctg gagttcgtca aacgaaaaag
      541 tggcgacagt agtaaatgga aaagtgaaaa cgctggcccg tggaactgcc accataaaag
      601 taacggctga ttctgttttc agcgctacct gtgccattgt ggttacccac gaagatttgc
      661 catatcagct tgtttggtcc gatgagtttg acggacctgc tcttgacctg actaaatgga
      721 gttacgaaac cggtggtggt ggctttggaa atcaggaaaa acaatactat actaatcggc
      781 ctgaaaatat ccgggttgag aatggaagcc tgattattga agcaaagaaa gaaagctata
      841 atggcaataa ttatacttcg gcacgcatca attccaaaga taaagtatcg tttacttacg
      901 gtagaatgga agcacggatc agtttgccgg ttggtaaagg aacctggccg gcttattgga
      961 tgatgggttc aaatattacg gcagtacggt ggccgctatg tggcgaaatt gatataatgg
     1021 agcatgtcgg ttcgaagcca acgatgattt cgcatgccgt tcacaccagt gagaaaaacg
     1081 gatcgaaagg gaataactgg tactctcaga aaacggttgc cggtgtagag aatgaatacc
     1141 atacttatgc catagaatgg gaagaaaaag caaatgaggg cgatgataat atgagtttcc
     1201 ttattgatgg agttaagagt gcaaccattt gggaacaaca tgtaaattcg actgtcaaaa
     1261 tgtggccttt taaaagcgat ttctattttc ttctcaatct ggccattggc ggaacaatgg
     1321 gtggaactgt ggatgatgct atattcaata acccggtact gatgaaagta gattacgtac
     1381 gggtttatca acgaaaataa ttccgaatat ataaacacat gtgggtttcg cgatttaaaa
     1441 atcgcgagtc tgaatttcaa tcagcaagtt ggaactattc ccgttgatca tgagcgctgg
     1501 ttcgcaaaac acgcttacac aattattgtt aaccatttct aatcctgtac catgttttta
     1561 aaaaggatca ctcatataaa atatacaacc ttccggaatt tacttctgtc gggcattgta
     1621 cttgcagctt ttgcatgtag tactgaggag cctcaacaac aagtaactga ggtgcatcag
     1681 caacgcagcc ccaagcgtgg agtttcctac aatttctcaa tactcgacga taccaaattg
     1741 ctttcgccgg gtgtttcgtg gttctacaac tggggtccgg atgtaagttc ctcattaaat
     1801 gttgctatca ccgatggcaa aatagatttc ttccccatgg catggaacgg ggcttttgat
     1861 gccactcgca ttcggaatta caaagctgca cacccggagt gcgaatacat actcgggttc
     1921 aatgagccca atctcaccga ccaggccaat atgaccccta cggtggcggc tcagaaatgg
     1981 gttccattgg ctgcactggc taaggagttg aacatgaaaa taatatcacc tgccatgaat
     2041 tatggtactt tggccggtta tggcgatcct attgtgtggc tcgatgaatt tttcaccaag
     2101 gttccgcttt ccgaaatcga cggaatagcc attcactgtt acatgggtaa tgcaggagcg
     2161 cttgcatcgt acgtaaagcg ttttaaaaaa tatgg
//
LOCUS       DATDNM010000801         3470 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_523111, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000801 DATDNM010000000
VERSION     DATDNM010000801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3470
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_523111"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1682)
                     /locus_tag="VI413_13385"
     CDS             complement(<1..1682)
                     /locus_tag="VI413_13385"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY6915662.1"
                     /translation="MNIENKIRFKAAALYIVVGITTAVMLIYLYNLRSNITSQKKEIE
                     KQHYSLALTNELIYAVGEVQSTVSLFVTTNDPLYIKQFGREILSIDSLIDTLAKIEPV
                     EKEKLQQISRLLSLQTTNILELNRQLGNGNPLLDISERIQNYKPQPRANSHIITTKKD
                     TLFKTSESKKNIFKRIKEVFSPEKDSTVVVSTQQVDTLRLANVDSLPILAEMKNLANT
                     AGKRYDKNIRAIGQQVANLIISDREISFQISGLLLDIHRQTLNSVLETIEKSEQSINR
                     NYTISIIGGIFALGLILVFILLIIYDVNKGKEAREKIRQVMESRHKLLLSVSHDIKSP
                     LGSILGYLELRRQQGEDMKSMQNSARHILALLENLLEFSSLEQGSLRINSLDFSLGEV
                     GEEINQMFVPLADAKNLSFLVSSDNVRLNSDALKIKQICINLVSNAIKYTREGQVTLE
                     MGYVDEYVSVEVKDTGVGIPKDKLEEIYEPFSRVESNNALADGTGLGMYVVKGLVELL
                     GGNILVESEVGSGTKVGVAIPCIKAENRIKRGAKKIAVYEDDPMVIEMVSGML"
     gene            complement(1864..2220)
                     /locus_tag="VI413_13390"
     CDS             complement(1864..2220)
                     /locus_tag="VI413_13390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915663.1"
                     /translation="MNEQVVLFISIVAGIFSILIIVCLVILCINVSKIRKNIGISESE
                     EYLIQKKMGNVEKAYYHLQRDFIIESTKRDLETYEIKEYYRLFSELKYRIPDFDQFKN
                     LEKFELLEQGKDGEWI"
     gene            complement(2415..>3470)
                     /locus_tag="VI413_13395"
     CDS             complement(2415..>3470)
                     /locus_tag="VI413_13395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915664.1"
                     /translation="IYKMKKTFLNSGFSVVMQIALLFFLCGINSCGQSGSSSVASNWP
                     KSANITSTIDAAGVSELSGLHWNPDFNRLYVVGDNGRLYILQLDAAKKSFTQIADFHK
                     LGGPEGITQVDYAANEFYTIDEKHYEIRRFSYTSDLSNVTMVHKWNLLAEYSGMVDTG
                     NDGPEGIVFVPDKYLSAVGFVSSETDEKYTSTKGMGGLMFIAHQKKGLIWVFDVNPDK
                     DDDFTLVGKYKTNRNESCDLAFDRSTGLLYILHNADENTLEVTDMTTTQHSGKGKFIM
                     KTEYQIPNPTGNINIEGFAIAPKFADPKQVSVWLCRDVSDDESVEYEKDCLWWYRPFA
                     AEGSCVKNWNIPKAKRK"
BASE COUNT         1072 a          741 c          515 g         1142 t
ORIGIN      
        1 agcatgccac tcaccatttc tattaccata ggatcatcct catacactgc aatctttttc
       61 gcaccccgtt taatcctgtt ctctgccttt atacaaggta tagccacacc aacttttgta
      121 ccactaccga cttcggactc aacaaggata tttccgccaa gtaattcaac caaccctttt
      181 acgacataca tacctaaccc agtgccgtcg gccagagcat tattactttc cacccttgag
      241 aacggttcgt aaatctcctc cagcttatcc ttcggtatac caacaccggt atcctttact
      301 tctacagaaa catactcatc aacatatccc atttccagcg taacctgtcc ttcacgagta
      361 tattttatag cattagatac cagattaata caaatttgct tgattttcaa cgcatcggag
      421 tttaaccgaa cattatccga actaaccaaa aaagaaagat ttttagcgtc ggcaagcggc
      481 acgaacatct gattgatctc ctctcctact tcacccagtg aaaaatccaa tgaattaatc
      541 cgcaaagatc cttgttcaag actcgaaaac tctaacaaat tttcaagtaa agctaaaata
      601 tgacgagcgg aattttgcat tgatttcatg tcctcccctt gctgcctgcg aagttcaaga
      661 taaccaagaa tagaccctaa tggactttta atatcgtgcg aaacagataa caaaagttta
      721 tgccggcttt ccattacctg acggatcttt tcacgtgcct ccttgccttt gttcacatcg
      781 tatataataa gcaggataaa caccaaaatc aatcctaacg caaatattcc tcctataatt
      841 gaaatcgtat agtttctatt gattgattgt tcactttttt caatagtttc gagtacagaa
      901 ttaagtgtct gacggtgaat atcaagtaac aagccggaaa tttgaaaaga aatctctctg
      961 tcggaaataa tcagattggc cacctgttgt ccgatagccc tgatattttt atcgtaacgt
     1021 ttgcctgccg tattagccag atttttcatt tctgcgagaa tcggcaacga atcgacgtta
     1081 gccaaccgaa gcgtatcgac ctgttgggtg gagacaacaa cggtgctatc cttctcagga
     1141 ctgaacacct ctttaattct tttaaaaata ttttttttgc tttcgcttgt tttaaacaga
     1201 gtatcttttt tagttgtgat tatgtgggag ttagcacgtg gttgaggttt atagttttgg
     1261 atacgttcac taatatccaa tagcggattt ccattaccta actgtcggtt cagttccaat
     1321 atatttgtag tttgcaaaga aagcaaacgg ctgatttgtt gcagtttttc tttctcaaca
     1381 ggttctattt ttgcaagagt atcgatcaaa gagtcaatcg ataaaatttc ccgaccaaac
     1441 tgctttatgt agagcggatc atttgttgtt acaaaaagac tcactgtaga ttgtacttcg
     1501 cctactgcat aaattaattc attcgttaaa gcaagagaat aatgttgctt ctctatctct
     1561 ttcttctgac ttgtgatatt gcttcgtaaa ttataaagat aaatcaacat cactgccgta
     1621 gtaattccta ccacaatgta caatgctgca gctttgaaac gaattttatt ctcaatattc
     1681 attatgcaaa gttataaatt attccaacaa aacaaatgta aatcatggca atcaaataga
     1741 aatgaataat gtagccgaag gcattgaaaa aaagtagtga tgattctatg caactacata
     1801 aaaacacgtt gtatatagga catatacaac gtgtttatat ttttcaaaag aaagttcgca
     1861 atgtcagatc cactccccat ctttaccctg ctccagcaat tcaaactttt ccagattttt
     1921 aaattgatca aaatcaggaa ttctatattt aagctctgaa aacaacctgt aatactcttt
     1981 tatttcatac gtttccaaat ctctcttcgt tgattcaatt atgaaatcgc gctgcaagtg
     2041 ataatatgcc ttctccacat tacccatttt tttttgaatc agatattcct ctgattcgct
     2101 gataccaatg ttttttctga tttttgaaac attaatgcac aaaataacca aacaaacaat
     2161 tattagaatt gaaaatattc ccgccactat tgaaataaat aaaactacct gttcattcat
     2221 aatagtattt ttttttattg attttattct atctgttttc tattattttg aggataaata
     2281 tttgcttgct gagttttgat atattgttta aaaataacgt tttaaacaca cgttttgttt
     2341 ctccatgata ttcaataaaa aagaaccggt tcaaataaat gaatcggttc tcttgctaaa
     2401 atgttttgag cttgttattt cctcttggct ttaggtatgt tccagttttt cacacaagaa
     2461 ccttcagctg caaatggcct ataccaccac aaacaatctt tttcatattc aacagattca
     2521 tcatcactca catcacgaca aagccataca ctaacctgtt tgggatcagc aaatttcgga
     2581 gcaatggcaa aaccctctat attgatatta ccggttgggt ttggtatctg atattcagtt
     2641 ttcataatga attttccttt acccgaatgt tgtgtagttg tcatatccgt tacttccaat
     2701 gtattttcat ccgcattatg caaaatgtaa agcaaacctg ttgaacggtc aaaagccagg
     2761 tcacaactct cattccggtt cgttttatat tttcctacca aagtaaaatc atcatcttta
     2821 tcgggattta catcaaatac ccagatcaat cctttctttt gatgcgcaat aaacattaag
     2881 ccacccattc cttttgttga cgtatatttt tcgtcggttt ctgaactcac aaacccaaca
     2941 gcagacaagt acttatccgg aacaaaaacg attccttcag gtccatcatt tcctgtatca
     3001 accattccgg aatactcagc cagtaaattc cacttatgca ccattgtaac attggacaaa
     3061 tcggacgtat aagaaaatcg tcttatttca taatgttttt cgtcaatggt ataaaactca
     3121 ttggcggcat aatccacctg tgtaattcct tccggacctc ctagtttatg aaaatcggct
     3181 atttgagtga atgatttctt agccgcatct aactgaagaa tatataaacg accgttatca
     3241 ccgaccacat acaatcggtt aaaatccgga ttccaatgaa gcccgctcaa ttccgatacg
     3301 ccagctgcat caatagtgct agtaatattg gctgactttg gccagtttga tgcaacggat
     3361 gaactaccgg attgtccgca actatttatt ccacacaaaa aaaagagtaa tgcaatttgc
     3421 attactactg aaaatccaga atttaaaaac gtttttttca ttttataaat
//
LOCUS       DATDNM010000802         3225 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1057920, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000802 DATDNM010000000
VERSION     DATDNM010000802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3225
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1057920"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            831..2240
                     /locus_tag="VI413_13400"
     CDS             831..2240
                     /locus_tag="VI413_13400"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6915665.1"
                     /translation="MKKTILILAIVLSAVNLFGQNISGKWNGLLNIHGRELRIVFDIT
                     KNGRSYSATMDSPDQGAMGIPVKTTSYSDSILTLYIAEAGIEYLGDLSKENTFIGMLK
                     QSGELFPLVLTKEKIKSTKQARVERPTMVAASHSYYIEDITFQNPKDNITLAGTFTLP
                     ITEKKSPAVILISGSGPQNRNAEAFGHKPFEMLADYLTSNGIAVLRFDDRGTGSSTGN
                     FENSTTADFATDVEAALSYLKSRPEINTSKIGLIGHSEGGIIAPMVAAASKDVNFIVL
                     LAGTGIPGDELILLQQELTGQISGVGEMPLLNDKVINGEALKLVANANDEETLETDLQ
                     SFLAEEITNHSDSKLPLGIAQQELVNQQVKQLTSPWFKFFVKHNPALVLQKVTCPVLA
                     LNGEKDLQVPAKINLEAIKGALDKGGNKNVKTKVLPGLNHMFQKCSTGSPAEYASIKQ
                     SISPVALYEIGKWVVRKTN"
     gene            2261..2569
                     /locus_tag="VI413_13405"
     CDS             2261..2569
                     /locus_tag="VI413_13405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915666.1"
                     /translation="MKNCLVILLLIHGLIHLLGFVKAFQLAPVEQLQSPVSKPAGICW
                     LFAFLLFATAAVTDFLKIGWWNLPAIAAVILSTTLIIGVWKDAKFGTIANLIILLFLL
                     "
     gene            2566..>3225
                     /locus_tag="VI413_13410"
     CDS             2566..>3225
                     /locus_tag="VI413_13410"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6915667.1"
                     /translation="MKKKFVAKILALLCISLVSSHLIASDMVIGRVTDDKNQPIGFAR
                     ISLLSEKTNDFVKGEMCNEKGEFLIDKIDPGAYKISVSMIGYAKNESEKVVIDPKKNR
                     IIEKVFILKEANHELQAVEVSAKQKFVEQAVDKVVVNPDASITAASENVYEILKKLPG
                     VTIDNNDNIVLKGKQGVNVLIDDKPTYLSSTELATMLKSMQGKNVNKIEIIENPSARY
                     DA"
BASE COUNT         1082 a          578 c          663 g          902 t
ORIGIN      
        1 ggtggattaa taagccgctc taatccgaat aaaataatgc ccgtgagaaa taagattctt
       61 acggacatta ttatttttat tcatttttgt ccgcaaaggg tcctaagatt ttatcaagac
      121 ttgataaatc aatgctgtct gtaaagcaaa atattcaggc cacaatatgc agaaagggct
      181 attccactag ccgaatcatg aactactgca ttcgctcctt gtctggtatc tatataagtc
      241 gtatatgata ctttgataag gatacatgaa gcactttgac aggtacctgt caaagtgttt
      301 gactcatacc tgtcaaggtg cttgacacgt acgtgtcaaa gtaactatat cggtgttagt
      361 tgaatggtca aataactaat acaatgcagg caagtatggg gaaacgactc aatccattct
      421 tagtatagat ttttcaactg tcttacaaat gatagttctt gttgaatcag gacactttgc
      481 gaacaatcat taatttttat ttatcccgcc tgcttttttg ttcggtgcaa atccaaaccc
      541 attattcgtt ccgtctaatt caagaaaaca gttcaaccgg taaaacaagg tattcaacaa
      601 tccttttagc ttgctcacta tctattagtt gcgggtgatt ttcggccgaa ttacttttgt
      661 ttcgtaaaca tgatgaaaca agaatccggc aattaaatga taaaaaaaga gacaggatgt
      721 aatatttgga acggaagtaa tgtctataat tttagctgga agaaataaaa agttttctgt
      781 ttttgaatta acgaataaaa cacaaaccaa accaataaaa atttacaaaa atgaaaaaga
      841 caattttaat tttagcaatc gttttgtcgg cagtaaatct atttggacaa aacatctcag
      901 gaaaatggaa tggattatta aacattcatg gacgcgaact cagaattgtg ttcgacatca
      961 ctaaaaacgg aagaagttat agtgccacta tggatagccc cgaccaaggt gctatgggaa
     1021 tacctgtgaa aacaaccagt tactcggatt caatccttac actttatatt gccgaagcag
     1081 gtatcgaata cctgggtgat ttgagtaaag aaaatacctt tattggaatg ctgaagcaat
     1141 cgggcgaatt atttccatta gtgttgacga aggaaaagat taaatccact aaacaagcaa
     1201 gagttgaaag accaacaatg gttgcagcgt ctcattctta ttacattgaa gatataactt
     1261 ttcaaaaccc aaaggataat attacactgg cgggaacatt tacactgcca attactgaaa
     1321 agaaatcgcc tgcagtaatt ctgatcagtg gcagcggacc gcaaaacaga aacgctgaag
     1381 cattcggaca taaacctttc gaaatgctgg ccgattatct gacctcaaac ggcattgccg
     1441 tattacggtt cgacgaccgg ggaacaggct cttccacagg taatttcgaa aattcaacaa
     1501 ctgctgattt tgctacggat gtagaagctg ccctgagcta tctgaagtcc aggccggaaa
     1561 taaatacaag taaaataggc ttgatagggc atagcgaggg tggtattata gcacctatgg
     1621 tagctgctgc ttcaaaagat gttaacttca ttgtgctgct tgccggcacc ggtattcctg
     1681 gcgatgaatt aatcctattg caacaggaat taacaggaca gatttcggga gttggtgaaa
     1741 tgccattatt aaacgacaag gtgattaacg gggaagctct taaattggtt gctaatgcaa
     1801 atgatgaaga aacattggaa acagaccttc agagttttct ggctgaggaa attacaaatc
     1861 actctgactc aaaattgcca ttggggattg cgcaacaaga attagttaac caacaggtaa
     1921 aacaactgac aagtccctgg tttaagtttt tcgtaaaaca taatccggct ttggttttgc
     1981 aaaaagttac gtgtcctgta ttggcattga atggcgaaaa agatttacag gttcctgcaa
     2041 aaattaattt ggaagccatt aaaggtgctt tggataaagg cggaaacaag aatgtaaaaa
     2101 caaaagttct gccgggttta aaccacatgt ttcaaaaatg cagtacagga tcgcctgccg
     2161 aatatgccag cattaaacaa tcaatttctc ccgtggcctt atatgaaata gggaaatggg
     2221 tggtgagaaa aacaaattga taaaatacta aacagtaacg atgaaaaatt gcctggtcat
     2281 actcctgttg attcacggat tgattcattt gttgggcttt gtaaaagcat ttcagcttgc
     2341 acctgttgag caattgcaaa gcccggtttc taaacctgcc ggaatatgtt ggttgtttgc
     2401 atttctcctt ttcgcaacag ctgcagttac tgattttctg aaaatcggct ggtggaattt
     2461 gcccgcaatt gctgcagtaa tcctatcaac aacgttaatt ataggcgttt ggaaagacgc
     2521 aaaattcgga actatcgcaa atctgattat tttattattt ctcttatgaa aaaaaaattc
     2581 gtggccaaaa ttttggctct gctttgtatc tcccttgttt cctcacattt aattgcctcc
     2641 gatatggtta ttggccgggt aaccgacgac aaaaaccaac cgattggatt tgccaggata
     2701 agcctgttga gtgaaaagac aaatgatttt gtgaaagggg aaatgtgtaa cgaaaaaggc
     2761 gagtttctga tagataaaat agatccagga gcttataaaa tttcggtaag catgattggt
     2821 tacgctaaaa atgaatcgga aaaagtggtg attgatccca agaaaaacag aataattgaa
     2881 aaagtattca ttctgaaaga agccaatcac gagttacaag ccgtagaggt gtcggccaaa
     2941 caaaaatttg tagagcaagc tgttgataaa gtggtcgtta acccggacgc atccattact
     3001 gcagcttccg aaaatgtata cgaaatattg aaaaagctac cgggtgtgac tatcgataac
     3061 aacgataata tagttctgaa aggaaagcaa ggagtgaatg tgctcattga tgacaaaccg
     3121 acgtacctgt cgagtacaga gctggccacg atgcttaaaa gcatgcaagg taaaaatgtg
     3181 aataaaattg agattatcga aaatccatca gcccgttacg atgcc
//
LOCUS       DATDNM010000803         2595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2125952, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000803 DATDNM010000000
VERSION     DATDNM010000803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2125952"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VI413_13415"
     CDS             <1..193
                     /locus_tag="VI413_13415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915668.1"
                     /translation="KICVYMSLVLLGASLIYELTGFAYADVIGTAGLIYFSVSEGKEA
                     FEKAKGKECSCGGHCETKE"
     gene            complement(194..775)
                     /locus_tag="VI413_13420"
     CDS             complement(194..775)
                     /locus_tag="VI413_13420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf-like protein"
                     /protein_id="HEY6915669.1"
                     /translation="MLSHLSNYHIILASQSPRRQELLSGLNIPFEVQVIEIEETYPKQ
                     LVGVDIPMYLAEKKANMFKDKMVENTLLITADTIVWHEGKVFGKPIDKADAARMLKAL
                     SGKTHQVITGVCICDIKRRKTFHVISEVRFARLTAAEIEFYLTNYEPYDKAGSYGVQE
                     WIGYIGVEHIDGSYFNVMGLPIQRLYTELKRWK"
     gene            complement(863..1849)
                     /locus_tag="VI413_13425"
     CDS             complement(863..1849)
                     /locus_tag="VI413_13425"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranylglycerol-phosphate
                     geranylgeranyltransferase"
                     /protein_id="HEY6915670.1"
                     /translation="MVAYFKLIRFWNLIFIAFIQFVMRQIVLIPILQTYGFDVAQETN
                     MLYLLIAATVFIAAGGYVLNDYFDVKIDAINHPDNQIVGNTVTRSKAMLLHQILTGVG
                     VVCGLLLALLAKSFTLGFIFIVVPGLLWFYSASYKRQFLTGNLVVAFLAALTVLVVGI
                     SELAFLQKEYGKLIFETPIPSQFYAWIGGFTLFSFLCTWIREIIKDMEDEKGDREMEC
                     RTMPIKWGSAKTKIFLYGLIAVTVAGLYFVNGLFITFPGTLTLRYITFGIALPFAAVS
                     YLIATAKVPLHFHQAATLTKIIMLIGVLYSFLFYYLQAKAYGISLFNLFMVQ"
     gene            complement(1897..>2595)
                     /locus_tag="VI413_13430"
     CDS             complement(1897..>2595)
                     /locus_tag="VI413_13430"
                     /inference="COORDINATES: protein motif:HMM:NF022188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HEY6915671.1"
                     /translation="IITQIYSRTLSNAETLGKKLDCPYTSDIYDIRTDADIYFYALKD
                     SAFKHFIRNFDMPAAIHVHTAGSVSMSEFDGFATKYGVFYPLQTFSKSKPVDFSEVPI
                     CIEACNSEVQLQLLDLAKLLSSKTYIITSEQRQKLHIAAVFACNFTNYMYDAASQILE
                     DSGIAFEIIQPLIAETANKIKTMTPYAAQTGPAVRYDEKIIKKHLYMLIKKPGFRKMY
                     KLLSKNIHKRHSER"
BASE COUNT          817 a          490 c          483 g          805 t
ORIGIN      
        1 caaaatttgc gtatatatgt cgttggtatt gcttggtgca agccttatat atgaacttac
       61 agggtttgcc tatgccgatg ttattggtac agccggatta atttattttt cggtttcaga
      121 aggcaaagag gcatttgaaa aagcgaaagg taaagaatgc tcctgtggcg gtcattgcga
      181 gactaaagaa tagctatttc cagcgtttca attcggtata aagacgttgt atgggcaaac
      241 ccataacatt gaagtacgaa ccatctatat gttccactcc aatatatcca atccattcct
      301 gaacgccgta tgatcccgct ttatcatagg gctcatagtt cgtgaggtaa aattcaattt
      361 cggctgctgt gagtcgtgca aaacgaactt cggaaataac atgaaatgtt tttcttcgct
      421 ttatatcaca gatacaaact cccgtaataa cctgatgcgt ttttccagac aaagctttga
      481 gcattcgggc agcatcagct ttatcaatcg gtttaccaaa cactttacct tcgtgccaca
      541 ctatggtatc tgccgtgata agcaacgtgt tttcaaccat tttatcttta aacatattag
      601 cctttttttc ggccaggtac atgggtatat ctacacccac cagttgtttc ggataagttt
      661 cttctatttc aataacctgt acttcgaaag ggatatttaa tccactgagg agttcttgcc
      721 gccgtggtga ttgtgaggcc agaattatat ggtaattact taaatgagag agcatgttga
      781 aattatttat ttctaattgt tgaaaaacga attaattttt tgattaaaca aatcaaggtt
      841 gaaacagttc agaaagctgc ttttattgaa ccataaacag gttaaataaa cttattccat
      901 atgctttcgc ctgcaaataa taaaataaga agctatagag aaccccaatc agcataatta
      961 tttttgtcag agttgcagcc tgatggaaat gcaacggaac ttttgcagtt gcaatcagat
     1021 acgatacggc tgcaaatggt aacgctattc cgaatgtaat ataccgaagt gttaatgttc
     1081 ccggaaaagt tataaataat ccatttacaa aatataaacc agcaacagta actgctatca
     1141 aaccatataa aaatattttg gtttttgcac ttccccattt tataggcatt gtgcgacact
     1201 ccatttctct gtcgcctttc tcatcttcca tgtctttaat gatttcacga atccacgtac
     1261 ataagaatga aaagagtgta aaaccgccaa tccatgcata gaattgcgaa ggaataggcg
     1321 tttcaaatat aagttttccg tattcttttt gaagaaaagc cagttcggat atgccaacta
     1381 ctaaaacggt gagtgctgcc agaaaagcaa caaccaggtt tccggtgaga aactgccgtt
     1441 tatagctggc tgaataaaac caaagtaaac caggtacaac aataaaaata aatcccagtg
     1501 taaagctttt ggccagcaaa gccagcaaca atccacaaac aactcccact ccggtaagta
     1561 tctgatgcaa taacattgct ttgcttcggg tgacggtatt tcccacaatc tgattatcgg
     1621 gatgattaat ggcatcaatt tttacgtcaa aataatcatt cagtacatat cctcctgctg
     1681 caataaaaac agtagcagca attagcaaat acagcatatt ggtttcttgt gcgacatcaa
     1741 atccataggt ttgcaaaata gggataagca caatctgtct catcacaaac tgaatgaatg
     1801 ctatgaaaat taaattccag aaacggataa gtttaaaata agctaccata aatgattagt
     1861 tatatgtgat ttaaataaac ctgattactg cataaattat ctttcggaat gtcttttatg
     1921 tatgtttttg gacaaaagtt tatacatctt tctaaatccg ggctttttaa tcagcatata
     1981 aaggtgtttt tttataatct tttcgtcata tctgactgct ggccctgttt gagctgcata
     2041 aggagtcatt gtttttattt tattggcagt ttcagctatc aacggttgaa ttatttcaaa
     2101 tgcaataccg gaatcttcca gaatctgtga tgccgcatcg tacatgtaat tggtgaaatt
     2161 gcaggcaaac acagccgcta tatgtaactt ttgccgttgt tcggaagtaa tgatataggt
     2221 tttgctgctt aataattttg ccagatcgag caattgtaac tgaacttcag aattacatgc
     2281 ttctatgcaa atgggaactt cgctaaagtc tacaggtttg cttttggaga aagtttgcag
     2341 cgggtaaaaa acaccgtatt tagtagcaaa tccatcaaac tcgctcatcg atacgcttcc
     2401 ggctgtgtgt acatgaatag cagcaggcat gtcgaagttt cgtataaaat gcttaaatgc
     2461 agaatctttc agggcgtaaa aataaatatc ggcatcggtc cggatatcat aaatatcgct
     2521 ggtataagga caatcaagct tcttgcccag cgtttcagcg ttggataagg tcctgctgta
     2581 aatctgagta atgat
//
LOCUS       DATDNM010000804         6813 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1804709, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000804 DATDNM010000000
VERSION     DATDNM010000804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6813
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1804709"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2408)
                     /locus_tag="VI413_13435"
     CDS             complement(<1..2408)
                     /locus_tag="VI413_13435"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6915672.1"
                     /translation="MKSTIAVMLLVLSLVFPFNANGQNAGSGTIIQGEIISTSDGSPL
                     IGVNVTELDENNRVISGTVTDINGHYVLRVKNMQNRLSISYVGFVKQIRKIDNSKTIN
                     IKLAENTHAIKDVEIVASKKTGQGGYVIPTREVGTAMQTISSKEFEGLQVGSVDEALQ
                     GRIAGLDIVSNSGDPGSGTSMRIRGVTSINGSSQPLIVVNGVPYEAQVDPNFDFANSN
                     QEQYANMLSINPDDILEISVLKDAAASAIWGSKGANGVLMITTKKGASGPTRVEYSYR
                     YTGTVQPKGLNILNGGDFTMLMKEAYLNPIQNDDAIKNVYEYNYDKNFTEYENFNNNT
                     DWVKEVTQVGNINDHYLTIIGGGERANYRVSAGYMSQNGTVIGQRYNRFSSRAYLEYN
                     VSDRIKFISELSLTNASNDRNYENLLGIAYAKMPNVSVYAQDAMGNNTDSYYNISQSS
                     ALAKGQKELKNPVALAYLATNNLKSTRILPTFRLQYDLMDPQVSMLRFNTYVSFDINN
                     NKTAMFLPQEVSNLTWSDKNVNRSFNGDSESLTIYSDNNIAWQPKFQSEDHSLLLYGS
                     FQINFGNSQSQGVTKFSLPSGEAIDASSMGYYEGAFTGHGPWRSLAFMARGHYSYKSR
                     YIIDGTLRRDGSTRFGKGKKFGNFPGISLKWIASDEPFMKESKKWLSMLAFRPAWGIS
                     GNQPGAEGLHFSRYKPYDSYIDMAAIRPAAPQLALTWETTTSYNYGIDLGLFDDAYVF
                     DINFYNKRTKDLLFKDVSVSQSSGFDNYSYINGGTMDNDGWEVNFFANRFIKTKNFSV
                     DFKF"
     gene            complement(2484..5069)
                     /locus_tag="VI413_13440"
     CDS             complement(2484..5069)
                     /locus_tag="VI413_13440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915673.1"
                     /translation="MKNYFGKALYRLDRLLIIIVIGVSLFASCTDDYYYDDREPDWLG
                     SSIYDYLKADGKYTNYTRLIDDLGYKEVLSLTGSKTLFVAKDSSFVEFYKNNPWGVSS
                     YEGLTLQQKKYLLYFSMINNPYIIERLSNYSLGDVFYEGAAMRRLTALSPIDSITHDI
                     AETVPDSKYWNYYKTNGIYILKDNTDIPMAYFIQSFLNKYAITNEDFAMLTGSTRKNN
                     DVHMFGNKIIQRDITCKNGYVQVMQSVLVPPTNMAQYISSNPSTKIFSKLLDRFSAPF
                     FDKKNTIAYKILHPEFTDSIFVKRYFATNGGAKLLPDPKKDNGMSNTLAVNLLTFDPG
                     WNSYTSNNASIKSDMAAMFVPTDEAMTNYFNSGVGEILKSRFGSWDNIPDEIILPFMK
                     RHMRTSLVESVPSKFNKMVDAENYRLPVEKSHIEGAYTGVNGEVFLTNEVYPPVDYIS
                     VYSPVLLSDNSKIMNWAINLSETSVDGTKFAFYKLYLNSLVSKYGLFIPTDEYFNKYI
                     DPIAYGQDVQGVLKFWFNPKTSAVNATVYKYDKTQDIVGDSVDVITSSEFLKNRLWSI
                     LDAHIVVGDVKDGNQYYVTKGNDIIKVDGSGTSMKVQGGNDVVRNTSASVSKVFNQYN
                     GTTYFLDKPIDPALKSVYNILSNTPQFEEFFTLLNGVPETSLQQIFAIQGVDSRIKFF
                     NAYRYTVYVPTNEAIKAAIANNTIKNWATINAMPDGTEKTAEVDKLLRFLKYHFQDNA
                     VFFGQTVNDQYQSATIKVDNSTTYWGTYKNKYYKIGVVGSPNSLTLTMDTKVGEPVRT
                     AHVVTTDGLYNLIAKDYIFAKKLTDYKSVDGTGSATGVLFNTSSITTSASSVIHQIDN
                     VLNFE"
     gene            complement(5160..>6813)
                     /locus_tag="VI413_13445"
     CDS             complement(5160..>6813)
                     /locus_tag="VI413_13445"
                     /inference="COORDINATES: protein motif:HMM:NF039201.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915674.1"
                     /translation="DRTGRPIWITEWNNGANWTTEYWPDGAANYTTANATKQLNDIKA
                     ILQVLDTAHFIERYSIYNWVQNSRAMVLGDTLTLAGKYYAANKPAVAFNRVNEVIPAF
                     TYSNPTLVISFPTTTKLTLKITDPNAESLRGFILEKKMDNGAYSEFYRSVNSTLIEYN
                     DTLNLNAASKIRYRVRSILADGTTTGYSNEVGFDVAGGGEDATNGNNFQYGTAGVLNL
                     GWNPVFFKKSYAAIPSIILGAPTNSNSSVLLSARAKYYSLSRFTLQVAPWAYQKVTSL
                     AKEESVPYLVSNIGSYDFGTLKAKAGKTPVTAAWTPVVFSTPFDTIPVVFANQLNPGS
                     AFATTVRVRNITKTGFEARLQKETAITTALGTETVSYFAITPGTGTIDNKKVIVGRTA
                     DKAVSTIYSTIYYGDSIANPIFISQMQTCNDDTVTATMRCLTVSSKYANVVKQRERST
                     GVTVTSAEMAGWMVINPVSTIQAVNIPVADVVTFFPNPVRDVLYLTQNNFDSPEVEIY
                     TMMGVLVKQLSVSERKINVSELLPGCYVLKTKQNGSRVFVKL"
BASE COUNT         2060 a         1434 c         1165 g         2154 t
ORIGIN      
        1 ttgaatttaa agtctacact aaaattcttg gtttttataa accggttggc aaaaaagtta
       61 acctcccaac catcattatc catagttcct ccatttatgt aagaataatt atcaaaacct
      121 gaggattgag aaacgcttac atccttgaat aataaatcct ttgttcgttt gttatagaag
      181 tttatatcaa acacataagc atcatcaaaa agacccaggt caatcccata attgtacgat
      241 gtagtggttt cccaggttaa agctaattga ggagctgccg gacgaatagc agccatatcg
      301 atatacgaat cgtatggttt atatcggcta aaatgcaaac cttccgcacc aggttggtta
      361 ccactgatcc cccatgccgg acgaaatgct aacatactca accatttttt tgactctttc
      421 ataaaaggtt cgtcagaagc aatccacttc aatgaaattc cggggaaatt tccaaacttc
      481 ttcccttttc caaaccgggt acttccgtcc ctacgcaatg tcccatcaat aatataacgg
      541 gatttgtacg aatagtgacc acgggccata aatgcaagcg acctccatgg accatgtcct
      601 gtaaatgctc cttcataata acccatactt gaagcatcaa tagcttcacc tgatggaagt
      661 gagaatttgg ttacgccctg actttgagag tttccgaaat taatctgaaa tgaaccatat
      721 agtaataaac tatggtcttc gctctggaat tttggttgcc aggcaatatt attatctgaa
      781 taaatggtca gactttccga atcaccatta aatgatctgt ttacattctt atccgaccat
      841 gttaaatttg aaacttcctg tggaaggaac atggccgttt tgttattgtt tatgtcgaac
      901 gaaacgtatg tattaaaacg caacatgctt acctgaggat ccatcaaatc gtactgcaaa
      961 cggaaagtag gcaaaatacg ggtggactta agattattgg ttgctaaata cgctaaagca
     1021 actggattct ttaattcttt ttgaccttta gccagcgctg acgattgact tatattataa
     1081 taactatctg tgttattgcc cattgcatcc tgcgcataaa cactcacgtt tggcattttg
     1141 gcataagcaa ttcctaacag attttcgtaa tttctatcgt tgctcgcatt ggttaacgat
     1201 aattccgaaa taaattttat acgatcagat acattgtatt ccaggtaagc acgagaagag
     1261 aaacggttat accgttgtcc aatcactgta ccattctgac tcatatatcc agccgaaaca
     1321 cgatagttgg cacgttcacc tccaccaata atagtcagat agtggtcatt aatattacct
     1381 acctgagtta cttcttttac ccaatcagta ttattattaa agttctcgta ttcagtaaaa
     1441 ttcttgtcgt agttatactc gtacacattt ttaatagcat catcgttctg aattggattt
     1501 aaatatgcct ccttcatcaa catggtaaag tctcccccat tcagaatatt cagtccttta
     1561 ggttgaacag ttcctgtata ccgatatgag tactcaaccc gtgtaggacc cgatgctcct
     1621 tttttagtag taatcatcaa aacgccatta gctccttttg aaccccaaat tgcagaagct
     1681 gcagcatctt tcaatactga aatttccaaa atatcgtcag gattaatact caacatgttc
     1741 gcatattgtt cctggttaga gttagcaaag tcgaagttcg ggtctacttg cgcttcgtat
     1801 ggcacaccgt taacaacgat caatggctgg ctactaccgt taattgacgt aacaccacga
     1861 atacgcatag aagttccact acccgggtca cctgagttgg acacaatatc caaaccggcg
     1921 atacgtccct gaagtgcctc gtcaaccgaa cctacctgca atccttcaaa ttctttcgag
     1981 ctgattgttt gcatggccgt accaacctca cgggttggta tcacatatcc tccctgacca
     2041 gttttctttg aggcaacaat ttccacatcc ttgatagcat gtgtgttttc ggccaatttg
     2101 atattgattg ttttactgtt atcaattttc ctgatttgct ttacaaagcc gacataactg
     2161 attgacaacc ggttttgcat gtttttcacc cgtaacacat aatgtccgtt tatatctgta
     2221 acggtaccac taattacacg gttattttca tctaactcgg ttacattcac acctatcaat
     2281 ggagaaccat cgctggtgga tattatttcg ccttgtataa ttgtaccact acccgcattc
     2341 tgaccatttg cattgaatgg aaagaccagg gataacacta gcagcataac tgcaattgtt
     2401 gatttcatac gtaaatattt tttaaaggtc atatgcaact tgtcctaaaa gaaacaggac
     2461 tcgtttcata ttatttttca ttattattca aaattcaata cgttatcaat ttgatgaata
     2521 accgaagaag ccgaggtagt aatacttgat gtattaaata agactcctgt agcagaaccg
     2581 gtaccatcaa cagatttata atcggtaagt tttttggcga aaatataatc tttggcaatc
     2641 aggttatata atccatcggt tgttacaaca tgagctgtgc gaacaggctc tcccacttta
     2701 gtatccatag tcagagttag cgagttcggt gaaccaacta caccaatttt ataatactta
     2761 tttttatacg ttccccaata tgttgttgaa ttatccacct tgatagttgc cgattgatat
     2821 tggtcgttaa cagtttgacc aaagaacaca gcattatcct gaaaatgata tttcaggaaa
     2881 cgaagcaatt tatcaacttc cgcagttttt tcagttccat caggcattgc attaattgta
     2941 gcccagtttt taatggtatt atttgcaata gccgccttaa tcgcttcatt ggttggaaca
     3001 taaacagtat aacggtaagc gttaaagaac tttatgcgtg agtcaacccc ctgaatagca
     3061 aaaatttgct gtaaacttgt ttcgggaaca ccattcaaca aagtgaaaaa ttcttcaaat
     3121 tgaggtgtat tacttaatat gttataaaca gacttaagcg ccggatcaat tggtttatca
     3181 agaaaataag ttgtgccatt gtattggttg aatactttag aaactgaagc actggtattt
     3241 cggacaacat catttccgcc ctggactttc atggaagttc cgctaccgtc tacttttatg
     3301 atgtcgttac ctttggtaac ataatattga ttaccatcct ttacatcacc cactacaata
     3361 tgtgcgtcca gaatactcca aagcctgttt ttcaaaaact cggaagaagt gattacatca
     3421 acagagtcac ctacaatatc ctgagttttg tcatatttgt aaacggtagc gttaactgcc
     3481 gaagttttag gattaaacca aaatttcaaa accccctgaa catcttgtcc gtatgcaatg
     3541 ggatcgatgt atttattgaa atattcatca gtaggaatga acaaaccata tttacttacc
     3601 aatgagttta agtataattt ataaaaggca aatttggtcc catccacact tgtttctgac
     3661 aaattaatcg cccaattcat tattttcgaa ttatcgctta acaacaccgg actatatacg
     3721 gatatataat caacaggagg atacacttcg tttgtcagga atacttcacc gttaactccg
     3781 gtgtatgcac cttcaatatg tgatttttca accggtagcc tatagttttc ggcatccacc
     3841 attttgttga acttgcttgg cacagattca accagcgaag tacgcatgtg tctcttcatg
     3901 aatggtagaa taatttcatc aggaatattg tcccacgagc cgaaacggct tttcagaatc
     3961 tctcccactc cactattaaa ataattggtc attgcttcgt cagttggcac aaacatggct
     4021 gccatgtccg attttattga agcattatta gaggtgtaac tattccaacc cggatcaaat
     4081 gtcaacaaat tgacagccaa cgtattcgac attccattat ccttcttagg atctggtaaa
     4141 agttttgctc ctccgttagt agcaaaatat cgtttcacaa aaatagaatc agtaaattcc
     4201 ggatgcaaaa ttttgtaagc aatcgtattt tttttatcga aaaatggcgc gctaaaccga
     4261 tccagtaatt tcgaaaatat cttagttgat ggatttgatg aaatatattg agccatatta
     4321 gttggtggaa ccaatacact ctgcattacc tgaacataac cgtttttaca tgttatatcg
     4381 cgttgaataa tcttattgcc aaacatatgc acatcgttat tcttgcgggt actgcctgta
     4441 agcattgcaa aatcctcatt tgtaatagca tatttattca agaaactttg tataaaatat
     4501 gccataggga tatctgtatt atctttcaga atataaatcc cgttggtttt ataataattc
     4561 cagtacttac tatcaggcac tgtttcagca atatcatgtg taatgctgtc aatcgggctt
     4621 aaagcagtta acctacgcat agctgctcct tcgtaaaaca catcacccaa cgaataattt
     4681 gaaaggcgct caatgatata cggattatta atcattgaaa aatacaacaa gtattttttt
     4741 tgctgaagag taagaccttc gtaactggaa actccccatg gattgttttt gtagaactca
     4801 acaaaagaac tgtctttagc cacaaaaagt gtcttacttc cagtcaaact caaaacttct
     4861 ttatagccca aatcatcaat cagccgtgta tagttagtat actttccatc agccttcaag
     4921 tagtcataga tactgcttcc caaccaatcg ggttctctgt cgtcgtagta ataatcatcc
     4981 gtacaggaag caaacaatga aactcctata acgataatta tcaacaatct atctaatcga
     5041 taaagtgctt ttccaaaata atttttcatt tctgtattta tatttaaaac tattattttt
     5101 tctatttgca atctggtgct taattatttt agttgaatga atttcaactt tccggagact
     5161 tacaatttca caaataccct ggaaccattc tgtttggtct tcagcacata gcaaccgggc
     5221 aatagctctg atacatttat cttgcgctca ctgacactaa gctgttttac caatacaccc
     5281 atcatagtgt aaatttccac ttcagggctg tcaaaattat tctgagtaag ataaagtaca
     5341 tctctaaccg gattcggaaa gaaggtaacc acatcggcaa caggaatatt aaccgcctgg
     5401 atagtgctta ccggattaat aaccatccaa cctgccatct cggccgaagt aacagtaaca
     5461 ccagttgatc tttcgcgttg tttaactacg tttgcatatt tactagaaac agtcaggcaa
     5521 cgcatggtag cagttactgt atcatcgtta cacgtttgca tctgggaaat gaaaattgga
     5581 tttgcaatac tatcgccata atatattgta ctgtaaatgg tactaacagc tttatctgcc
     5641 gttcttccaa ctatcacttt tttattgtct atcgtacctg ttcccggggt tatagcaaaa
     5701 taagaaaccg tttccgtgcc cagggcagta gttattgctg tttctttttg caatctggct
     5761 tcgaaaccag ttttagtaat gtttctaacc ctcacagtag tagcaaaagc cgaccctgga
     5821 ttcaactgat tggcaaaaac aacgggtata gtatcgaatg gagttgaaaa cacaacaggt
     5881 gtccaggctg cagttaccgg agtttttccg gccttagctt tcagagtacc aaaatcgtaa
     5941 cttccaatat tcgaaactaa ataaggaaca gattcttctt ttgccagtga agtcactttt
     6001 tgataagccc acggtgccac ttgtaacgta aaacggctaa gactgtaata cttggcccgg
     6061 gcactcaaca gcaccgaact gttgctattg gtaggtgctc caagaattat tgacggtatg
     6121 gcagcataag actttttgaa aaacacggga ttccagccta aatttaatac tcctgcagtt
     6181 ccatattgaa aattattgcc attagttgca tcctcgccac cgccagccac atcaaaacca
     6241 acttcgttgg agtagccggt tgtagttcca tcagccaata tgcttcgaac cctgtatctt
     6301 attttacttg ctgcattaag gttgagcgta tcgttgtatt caatcagagt agaatttaca
     6361 gatcggtaaa attctgaata agcaccatta tccatttttt tctccaggat aaatcccctt
     6421 aaactttctg cattcggatc cgtaatcttt aatgttagtt tagtggtagt tggaaaagaa
     6481 ataaccaatg ttggatttga gtaagtaaaa gcaggaatca cttcatttac cctattaaat
     6541 gccacggcag gtttattggc tgcataatac tttccggcaa gagtcaatgt gtcacccaaa
     6601 accatggcac gtgaattttg cacccagtta tatatcgaat atcgctcaat aaaatgagca
     6661 gtatccaaca cctgaagtat tgctttaata tcattcaatt gttttgttgc attggctgtg
     6721 gtataatttg cagcaccatc gggccagtat tctgttgtcc agttggcacc attattccat
     6781 tcggtaatcc agataggacg tccggtacgg tca
//
LOCUS       DATDNM010000805         2399 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_844216, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000805 DATDNM010000000
VERSION     DATDNM010000805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_844216"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..763
                     /locus_tag="VI413_13450"
     CDS             <1..763
                     /locus_tag="VI413_13450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915675.1"
                     /translation="SVGIQSFVISGYTRQGSQPDPLSHAWNAVLINSRYYEFDVTWAA
                     AANAESIDQYFLVPPTVFIKTHMPFDPIWQFLNNPLTNTEFVACDYSKLKVNSNYNYY
                     DSISKLPSLSVLDKMIRENNRIVKCGLTNSLVRERAALNQKNINLFRYNLAVETYNEG
                     VAVYNSYLDAKYKNFYGGELKQEQISNMLSKSRKRVVEAKTILNRIETDNRETNRLIR
                     NTQESIYLQKQKLNKEDIFVTNYFKAWKPIRIIMN"
     gene            807..1931
                     /locus_tag="VI413_13455"
     CDS             807..1931
                     /locus_tag="VI413_13455"
                     /inference="COORDINATES: protein motif:HMM:NF016364.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HEY6915676.1"
                     /translation="MRRIILFILVSLNTCLSFGADYSKIDKQAATAPATLRSATEISA
                     YLTKNLTTPTEKVRAIYYWISHNIRYDVSQLGSAGISYRSGERNLLNEVLQKRQGVCQ
                     HYAELFNACCKAAGIQSYIIAGYTKTDGKIAPLAHAWNAVVIDSKYYEIDATWAAGYV
                     ENGKFTAKFDDTYFMIPPAEFIKTHMPFDPIWQFLDNPVSNKEFQGSDFSKLKTRSNF
                     NFSDSIKNIAGLDSLNILIRENKRIRNCGLTNDLIREYVSYNQQNIVQIKYNQAVGEF
                     NKAIEAYNIYVMHKNKQFKGSSMEDSKIMELLTAANNHAESSENRIRFLNGDNSTIMK
                     NIFELQTQIEALKKNIDTETVFVKKYISTGKPFRIFLFGR"
     gene            2036..>2399
                     /locus_tag="VI413_13460"
     CDS             2036..>2399
                     /locus_tag="VI413_13460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915677.1"
                     /translation="MTQKRNFSILLALACILFFNSACTSGNDPIDNSVKTSGSLSFTA
                     TTSSYSGQYAPNHVLAIWVESSSGTFVKSLMVYAQARKQHLTHWLSATSSGNTTDATT
                     GATLTKHSAHSCTWNGKNV"
BASE COUNT          810 a          490 c          435 g          664 t
ORIGIN      
        1 atcagtagga attcaatctt ttgtaatatc aggatataca cggcagggtt cacaacctga
       61 cccgctgagt catgcctgga atgctgtact tatcaactcc cggtattatg agtttgatgt
      121 aacctgggca gccgcagcaa atgcggaatc tatcgatcag tattttttgg ttcctcccac
      181 cgtgtttata aaaacccaca tgccgtttga ccctatctgg cagtttttaa acaatccgct
      241 tacaaatacg gaatttgtag cctgcgatta ttctaaacta aaagtcaatt ccaattataa
      301 ttactacgat tcgattagca aactcccgtc tttgagtgta ttagacaaaa tgatcagaga
      361 aaataatcgt atcgtgaagt gtgggctcac caattcgctc gtacgtgaaa gagctgcact
      421 taatcaaaag aatatcaatc tgtttagata caacctagct gtagaaacct acaatgaagg
      481 agttgccgtt tacaattcct acttagatgc aaaatacaaa aacttttatg gtggagagtt
      541 gaaacaagaa caaatttcca acatgttatc aaagtcccga aagcgagttg tagaggctaa
      601 aaccatactt aataggattg aaactgacaa tagagaaact aatcgactga tacgaaacac
      661 acaagaatcc atctaccttc agaagcaaaa attaaataaa gaagatatct ttgtgacgaa
      721 ttattttaaa gcgtggaaac cgattcgaat tataatgaat taatccacta aaaacatttc
      781 aatcagacaa ctacttatta ttttacatga gacgcattat cctttttatt ctcgtatcat
      841 taaatacctg ccttagtttc ggtgccgatt atagcaaaat agacaaacaa gcagctaccg
      901 cacctgccac attaagatca gcaactgaaa tatcagctta tctcaccaaa aatctgacca
      961 ctcctacgga aaaagtccgg gccatttact actggatttc gcataatatc cggtacgatg
     1021 tatcgcaatt ggggagtgcc ggcatttctt atcggtcggg cgaacggaac ctgttgaacg
     1081 aagtccttca gaagcgccag ggcgtttgcc agcattatgc cgaactattt aatgcctgct
     1141 gtaaagcggc aggtatccag tcgtacataa ttgcgggata caccaaaacc gacggtaaaa
     1201 ttgcaccgct ggcccatgcg tggaacgccg ttgtaattga tagtaaatac tatgaaattg
     1261 acgcaacctg ggcagccggc tatgtcgaga atggaaagtt cacagctaaa tttgatgata
     1321 cctatttcat gattcctccc gccgaattta ttaaaacgca catgccattc gatcccattt
     1381 ggcagtttct ggataatccg gtgtcgaaca aagagtttca gggaagcgat ttctcgaaac
     1441 taaaaacccg ctcaaacttc aatttctccg attccattaa aaacatcgcc gggcttgatt
     1501 cgctgaatat tctcatacgc gaaaacaaaa gaatacgaaa ttgcggacta acgaatgatc
     1561 ttatcagaga atatgtttcc tataaccagc aaaatattgt ccagatcaaa tacaatcagg
     1621 ctgttggtga gtttaataaa gctatagaag catataatat ctatgtaatg cacaaaaaca
     1681 aacaattcaa aggttcgtca atggaagatt ccaaaatcat ggaactactc actgcggcaa
     1741 acaaccatgc agaatcatct gaaaaccgta tccgctttct gaatggcgat aattctacaa
     1801 ttatgaaaaa tatatttgag ctgcagaccc aaattgaagc attgaagaaa aatattgaca
     1861 cagaaactgt ctttgtaaaa aaatacattt caaccggaaa acctttcagg atatttttgt
     1921 ttggacgata aaacaataat taaggttaaa aatcatttga aaaatgtaac cattacaatt
     1981 taagagtcta ttgtgccgtt actttgtaaa tgaatttaaa cttaatcgca aaattatgac
     2041 acaaaaaaga aatttctcta ttcttctggc tttagcttgt attttgtttt tcaattcagc
     2101 ttgcacttcg gggaatgatc cgattgacaa ttcggtaaaa acatccggct cattgtcatt
     2161 tacagccacg acaagcagct atagtgggca atacgctcca aatcacgtac tggcaatttg
     2221 ggtagaaagt agttcgggta catttgtaaa atcacttatg gtttatgcgc aagcccgcaa
     2281 acagcattta acccattggc tttcggcaac atcttcaggc aatactaccg atgcaactac
     2341 cggtgcaact ttaactaagc atagtgctca ttcatgtaca tggaatggca aaaatgtga
//
LOCUS       DATDNM010000806         3079 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1912440, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000806 DATDNM010000000
VERSION     DATDNM010000806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3079
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1912440"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..398)
                     /locus_tag="VI413_13465"
     CDS             complement(<1..398)
                     /locus_tag="VI413_13465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005866134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEY6915678.1"
                     /translation="MAKTKKFLTCDGNQAAAHIAYMFSEVAAIYPITPSSTMAEYVDE
                     WAATGRKNIWGEKVQVQEMQSEAGAAAAMHGSLQAGALTTTFTASQGLLLMVPNMYKV
                     AGELLPGVYHVSARALASHALSIFGDHQDV"
     gene            complement(552..1730)
                     /locus_tag="VI413_13470"
     CDS             complement(552..1730)
                     /locus_tag="VI413_13470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004307073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6915679.1"
                     /translation="MEAFYNTHTYLVEHVQSPVRRLLMDEIDWTHRLIGIKGSRGVGK
                     TTFLLQYAKEHFGTDHSCLYVNFNNFYFTEHTLVEFAQKFCAQGGKTLLLDQIFKYEN
                     WSKELRECYDRFPELHIIFSGSSVMRLREENVDIKDIVASYNLRGFSFREFLNLQAGI
                     NLPSYTLEEILRDHVQIARDICQQVKPLDYFKPYLHHGFYPFFLEDRNFSENLLKTMN
                     MMIEVDVLLIKQIELKYLSKIRKLLYLIMNSAPGAPNVSQLSKEIETSRATIMNYIKY
                     LKDARLLNTLYAEGDDYPKKPNQVYVQNTNLMHVVTPGKVDSVAERKTFFYNTLHIRH
                     KVNMCKFQMDFCIDGQYHFKCESRPESGKHYTKALYAADNIEVGNKNEIPLWLFGFLY
                     "
     gene            2051..>3079
                     /locus_tag="VI413_13475"
     CDS             2051..>3079
                     /locus_tag="VI413_13475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6915680.1"
                     /translation="MKIKFIGAAREVTGSKHLVTTNEGKKILLDCGMFQGKGLETDAM
                     NRNLMFDPATIDYLILGHAHIDHSGLIPYMYKLGFRGSVVCTNATRDLCAIMLADSGH
                     IQELDNKWFNKKREKQGLNRVEPIYSESDTEKCMELFIGVAYDRRFQINDKINVKFTN
                     TGHMLGSAVVNLELIENGEKVHLAYTGDIGRPHNRILHPPVAFPQCDYLITESTYGDR
                     LHPADQESEAELLKIVVETCVDKKGKLIIPSFSIGRTQEIVFVLNSLYNKGLLPKIEV
                     FVDSPLSVNATEVFRLHPECMNDEVRAVIKYDPDPFGFNSLKMIKNVDESKALNDYQN
                     PCIIISSSG"
BASE COUNT          947 a          589 c          597 g          946 t
ORIGIN      
        1 attacgtcct ggtggtcacc aaatatagaa agagcatgtg aagccaaagc acgagccgaa
       61 acatgataaa caccaggcaa taactcaccg gcaactttat acatgttagg aaccataagc
      121 aatagaccct gagaagctgt gaaagtagta gtcaatgcac cagcctgaag cgatccgtgc
      181 atagcggcag cagcacctgc ttccgattgc atttcctgca cttgtacctt ttcgccccaa
      241 atgtttttac gaccggtagc agcccattca tcaacatatt cagccatagt cgacgatggt
      301 gtgattggat aaattgcagc tacttcgctg aacatatatg ctatatgcgc tgcagcttga
      361 ttaccatcac aggttaaaaa ttttttcgtt ttagccattt tgttagtaat ttattagacc
      421 cctaatcccg tacgactatg ctcacgccaa ggccgaaagg ggaacagaag caagttattg
      481 ttatttttat ttgtttttat tattatgtaa ttttctttta tatttttctt ctttttaaag
      541 actataggct cttagtaaag aaatccgaac agccatagcg gaatttcatt cttattccca
      601 acctctatat tatcggcagc atacaatgct tttgtatagt gttttccgga ttcaggccta
      661 ctctcgcatt taaaatgata ttgaccatca atacaaaaat ccatttgaaa cttacacata
      721 ttcactttat gtcttatatg cagagtgtta taaaaaaatg ttttccgttc tgcaacagaa
      781 tccactttgc cgggagtaac cacgtgcatt aagttagtgt tctgaacata aacctgattt
      841 ggcttcttcg ggtaatcatc accttcagca tacaaggtat tcaataacct tgcgtctttc
      901 aggtatttta tgtagttcat tatggttgca cgcgaagttt caatttcttt actcaactgg
      961 ctaacatttg gcgctccagg cgcagaattc attatcaggt agagaagttt tcgtatttta
     1021 gacagatatt ttaattctat ttgcttaatg agcaatacat ctacctcaat catcatattc
     1081 atggttttca acaggttctc ggagaaattc ctgtcttcca gaaagaacgg ataaaagccg
     1141 tgatgcaagt agggcttaaa ataatcgaga ggtttcacct gttggcaaat atcccgcgca
     1201 atctgtacat gatcccgaag aatttcttca agtgtatatg agggtaggtt tattccagct
     1261 tgtaaattaa ggaattccct gaacgaaaat ccacgtaagt tataggaagc tactatgtct
     1321 ttgatgtcaa cattttcctc acgcagacgc ataactgatg aaccagagaa aataatatgt
     1381 agttccggaa aacggtcgta acactcgcgt aactctttcg accagttttc gtatttgaat
     1441 atttggtcga gcaggagagt ttttcctccc tgagcacaga atttttgagc gaactcaacg
     1501 agtgtatgtt ctgtgaagta gaagttattg aaattgacat acaaacaact gtggtctgtg
     1561 ccaaaatgct ctttggcata ttgaagtaaa aacgttgttt ttcccacacc gcgactgcct
     1621 ttaattccta tcaggcggtg cgtccagtca atttcgtcca taagtaaacg cctgacgggc
     1681 gattggacat gttcgactaa atatgtatgt gtgttataaa acgcctccat ttatgcattt
     1741 tttagatcac aaaattacta tattatttcc attttgcaat gcagagatgg caaaattagg
     1801 ataaattaca tccaaagctc tcagaaatag ctgttataag gcctttttgc aagtataaaa
     1861 ataccgaaaa aacttaaatt tatacaattc aataaatatt tgatgaatga atacaaacta
     1921 ttaacctaat aatggggttt tatgagttag attgagtagt tttgaaaact ctaaattact
     1981 accccaagca atcaggtaaa ttgacgtgat acaagttaaa atacatacat aaccaataat
     2041 acatactatc atgaaaatca aatttatagg tgctgcacgt gaagttaccg gcagtaaaca
     2101 tcttgtcact acgaacgaag gtaaaaaaat cctgttggat tgcggtatgt ttcagggaaa
     2161 aggtttggaa accgatgcca tgaaccgcaa tctcatgttt gatccggcaa ccatcgatta
     2221 tttaattctc ggtcatgcac atattgacca ttcgggacta attccgtaca tgtacaaact
     2281 tgggtttcgt ggctcagtgg tttgtaccaa cgccacccga gatctttgtg ccattatgtt
     2341 ggccgatagt ggacatatcc aggaattgga taacaaatgg tttaataaaa agcgtgagaa
     2401 acaagggctt aaccgtgtag aaccaatcta cagcgaatct gatactgaga agtgcatgga
     2461 attgtttatc ggtgtggctt atgaccgccg tttccagata aatgataaga taaatgtcaa
     2521 atttaccaat accggtcaca tgcttggaag tgctgtggta aatctggagt taattgaaaa
     2581 tggtgaaaag gttcatttgg cgtatactgg tgatatcggc cggcctcata atcgtattct
     2641 tcatccgcca gtagcatttc cgcaatgcga ctacctgatt accgaatcta cctatggaga
     2701 ccgcctgcat cctgccgacc aggaaagtga agctgaatta ttgaaaattg tggttgaaac
     2761 ttgtgtagat aaaaaaggca agttgattat tccatcgttc tcaatagggc gtacacagga
     2821 aattgttttt gtgttaaaca gtctgtataa taaagggttg ctgccaaaaa ttgaagtttt
     2881 tgttgatagt cctttatcgg taaatgctac cgaagttttt cggctgcatc cggaatgtat
     2941 gaatgatgaa gtgagagctg taatcaaata cgatcctgat ccgtttggat ttaattcact
     3001 gaaaatgatc aaaaatgtag atgaatccaa agcgctgaac gattatcaga atccatgtat
     3061 cattatttcc tcatcggga
//
LOCUS       DATDNM010000807         2340 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2020160, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000807 DATDNM010000000
VERSION     DATDNM010000807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2020160"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..1199
                     /locus_tag="VI413_13480"
     CDS             6..1199
                     /locus_tag="VI413_13480"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEY6915681.1"
                     /translation="MITDETINKVLLALADEAESQTESILIENTKDLVAMEKSNPMYD
                     RLLLSKERLAGIAGDIRNVATLPSPLGKQLMETARPNGMKITKVTVPFGVVGIIYEAR
                     PNVSFDVFSLCLKSGNACVLKGGTDAHNSNSAIVKVIKSVLEKFGLDQNVVTLLPAGR
                     EATAELMNAVGTVDVIIPRGGKGLIDFVRDNSRIPVIETGAGICHTYFDEFGDVEKGK
                     EIIFNSKTRRVSVCNSLDCLVVNERRLADLPTLCEKLASKDVIIYADVKAYTFLNGKY
                     PSALLQKATEESYGIEFLDYKMSVKTVSTIREAVDHISKHSSKHSECIVSENEQQISY
                     FDKMVDAACVYTNVSTAFTDGAQFGLGAEIGISTQKLHARGPMALEELCSYKWIIKGE
                     GQVRS"
     gene            1481..1726
                     /locus_tag="VI413_13485"
     CDS             1481..1726
                     /locus_tag="VI413_13485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005782296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEY6915682.1"
                     /translation="MNIYVGNLSYKVRENDLQGVIEEYGQVESCKIIKDRETGKSKGF
                     AFVEMADDAAAAKVIEELNGAEFDGRSMVVKEARPRN"
     gene            1806..>2340
                     /locus_tag="VI413_13490"
     CDS             1806..>2340
                     /locus_tag="VI413_13490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915683.1"
                     /translation="MGRLKGIFSDYGVISKILLLVGISCCFTVVGLIVWTLISKGNPT
                     DIESVKLMQLLQSMGMFVLPPLAFAYFCSNKPTGFLYFDRRINWLHIALVIFFMVLII
                     PGINLLTSLNQHLILPKTFAGIEAWMRSSEEQMAKLTEQLLNVHTLTALGFNVFLIAM
                     IPALGEELFFRGAVQGIF"
BASE COUNT          697 a          367 c          507 g          769 t
ORIGIN      
        1 tgaatttgat aactgacgag acaattaata aggtcttact agctctggct gatgaagctg
       61 agagccaaac cgaatcaatt ttgattgaaa ataccaaaga tttggtagct atggaaaagt
      121 caaatccaat gtacgatcga cttttgctta gtaaagaacg acttgctgga attgctggag
      181 atatcaggaa tgtagctacg ttaccttcgc ctcttggtaa acaactcatg gaaactgctc
      241 gcccaaatgg tatgaaaatt accaaagtga ctgttccttt tggtgtggtt ggaatcattt
      301 acgaagcacg tccgaatgtg agttttgatg tattctcctt atgtttgaaa tccggaaatg
      361 cctgcgtatt gaaaggtgga acagatgctc ataactccaa ttccgctatt gtgaaagtaa
      421 taaaatcagt gttggaaaaa ttcggactgg atcaaaatgt tgtgactttg ctcccagcag
      481 gccgtgaagc cacagcagaa cttatgaatg ctgtaggaac tgtagatgtt attattcccc
      541 gtggcggaaa aggattgatt gattttgtca gagataattc ccgcattccg gtaattgaaa
      601 ccggagctgg tatttgccac acttattttg acgaatttgg tgatgtggag aaagggaaag
      661 aaatcatttt taattcaaaa acaagacggg taagcgtttg taattcattg gactgcttag
      721 tggtaaatga aaggcgatta gctgacctgc caacgctttg cgaaaaatta gcatctaaag
      781 atgtgataat ttatgctgat gttaaggcct atacttttct gaatggcaaa tatccatctg
      841 ctttgctgca aaaagcaaca gaagaaagtt acggaatcga gtttcttgat tataaaatgt
      901 ctgtaaaaac agtttcaacg attcgtgaag ctgttgatca tatttcgaag catagttcga
      961 aacacagtga atgcattgtg agtgagaatg aacaacagat ttcctatttt gataaaatgg
     1021 tagatgcagc ttgtgtttat acaaatgttt ctactgcatt tactgacggt gcacagtttg
     1081 gactcggagc cgaaataggg attagtacgc agaaactaca tgctcgtggg ccaatggcat
     1141 tggaagaatt gtgttcgtat aaatggatta ttaaaggcga aggacaagta agaagttagt
     1201 gctgttttgt cactgttgtg gttggcagat cttgaaatgg atttgtttgc tgtttttttt
     1261 gataattagc attttctttg aatcattcac ttaatttcaa atattttatg ctatttgttg
     1321 tataatcaaa aataaatgtt tttctttgta gcgaaaagaa agtgtatttt ctcgaatggt
     1381 tatttccaac tctccttatt ttcagggacg gaattgtttt ttaacctcgt ttgtttatac
     1441 tgttcttgaa aacaatttat tcaattttta tttttatttt atgaacattt acgtaggtaa
     1501 cctaagttac aaagttcgcg aaaacgacct tcaaggcgtt atcgaagagt atggtcaagt
     1561 tgaatcatgc aaaatcatca aagatcgcga aacaggaaaa tcaaaaggat ttgcatttgt
     1621 agaaatggct gacgatgcag ctgctgcaaa agtaatcgaa gaattaaacg gtgctgaatt
     1681 tgatggccgc tcaatggtcg ttaaagaagc tcgtccaaga aactaagatt tttttctaag
     1741 acacacaaga gaacttctgt tatcgaaaga tagcaggagt ttttttgtaa aataaagttg
     1801 aatatatggg taggttaaaa ggcattttct cagattatgg agttatttcc aagatattgc
     1861 tccttgttgg aatttcttgt tgtttcacgg tagtcggatt aattgtatgg acgctgattt
     1921 cgaagggaaa tccgactgat attgagtccg taaaattaat gcaattgctt cagtctatgg
     1981 gaatgtttgt gttgcctcct ttggcttttg cctatttttg tagcaataaa ccaactggct
     2041 ttttgtattt cgaccggaga ataaattggt tgcatattgc tttggtgata ttctttatgg
     2101 tgttgattat tcccggaatc aacctgctaa ccagtcttaa ccaacatcta attctgccaa
     2161 aaacatttgc aggcattgaa gcttggatga gatcgtcgga agagcaaatg gctaaactta
     2221 ccgaacagct gcttaatgtg cacactctga ctgctttggg ctttaatgtt tttcttattg
     2281 ctatgattcc tgcactgggt gaagaacttt tttttcgggg ggctgttcaa ggtattttcc
//
LOCUS       DATDNM010000808         6665 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1164106, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000808 DATDNM010000000
VERSION     DATDNM010000808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6665
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1164106"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..278
                     /locus_tag="VI413_13495"
     CDS             <1..278
                     /locus_tag="VI413_13495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6915684.1"
                     /translation="YQPEKINEEESWVDSYEVCTFLKISERTLQRLRTKGLISYSIIS
                     GKTYYTIAEVKRMLNERLVRSNQEALDNLIESHKTYVEQRRNTRTDR"
     gene            241..2286
                     /locus_tag="VI413_13500"
     CDS             241..2286
                     /locus_tag="VI413_13500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA primase/helicase"
                     /protein_id="HEY6915685.1"
                     /translation="MLSKEEILARTDKGLNVFKHYLPFPFRVGRNFLNPLYEDKKASC
                     NVYFDRTNDQYKLKDYGNDNYSGDCFHFVGKIQGTDCRHADSFIEILQKINQDLCLGL
                     DNVSSNQPQKTMSPLSPILESKEEQPKQLKPFSIKVKPFSELELTYWQQYGISLEILK
                     RYQVVSLKEFASENNEGKPYKLTPSDKEPIFAYQGKRYLKLYRPFSDVRFQYAGDLGD
                     KYCFGLEQLPPKGNILFIIGGEKDVLSLVAKGFSAICFNSETSNIPQSTIRKLTYRFK
                     HVVILYDCDKTGLEASAKHEQQLSSLGVKRMTLPLKGTKEEKDISDFFKLGNSRENFQ
                     KLFIQFLDTIYAETMAVLKSCEIDFTKPPISAEMIISINNVPLGTQGNLCCITGGEGT
                     GKSNYICALVAGTLNTDDDDIDTLGTRIKPNRQSKAVLLYDTEQSELQLYKNTLNSLK
                     RAKQKHFPESFRAYCLTGMSRKERLQAIIQSMDKFFYEFGGIHLVIIDGIADLIHSAN
                     DEAESIRIVDELYRLAGIYQTCIVCVLHFIPNGLKLRGHLGSELQRKSAGILSIEKDD
                     QPGVSVVKVLKVRDGSPLDVPLIQFAWDKKEEMHVYLGEKTKAEKEKRKENELTATAK
                     TIFAQKRYYTYQELTDKLQEYLDVKERTAKGYIKFMREKDIILKDPSKISYFVIGHG"
     gene            2697..6653
                     /locus_tag="VI413_13505"
     CDS             2697..6653
                     /locus_tag="VI413_13505"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6915686.1"
                     /translation="MNTIKLFLIITLIGLNSINVTGESSYKFYHLTAEDGLSNNSVQA
                     ILRDSHGFLWIGTGFGLNRYDGYSFKTYLAQPNVPNTMVANYTSGLQEDGLKNIWIDY
                     GNNYVVYNPEKDNFITDINIILEKLGVKTNGNRKIYVDKKKNLFVITLNEIYFYNVAA
                     KKLNIYKSPQFNFSNIEVSDDLSNLYIVDSKDFCWQMEKKSGELKKMALPTVSDFNYE
                     NKRTKIFADSGGGLWLYCGKDEYVYFRQTNSSLWQKIYLNSSIKSQNSIFSIVEGRNG
                     QIWIATDHKGLFLYDKSTSLLKNITSNSLSPTSIASNYVASILVDNTGTLWVGYIKNG
                     ISFFNESFQNFINVQNDQCKNISRIVELRNGNVLLGTDGNGLYETNYNTNNVNKLPIP
                     NTAITALLEDKNGKVWIGTYQQGLYCLYHNKLKHFTTTNSNLSSDNIWGIVEDKYENL
                     WIGTLGGKIHKYNINDNTNYFETPFKDTKYISGMFYDGDKTIYATTGYGLTIIDIEKN
                     TNQVFLGNKKGNQQLNQLQISVVYKDGRNLLWIGTNAGLSIWDLKKDSLSYFDISDGL
                     SGNIIRGIAEDNSHNIWVTTSKGLSVIMLDNNNRIRICRNFSIRDGIKNDYFNNNAIC
                     ELKNGNILAGTTDGYIIINPLKVTARKEPLSRVYLTKLIVANTVINVDSVYNGHVILN
                     KSIELLSELNLKYNDKLVTLEFTTVDLINANKVKYRYKIEGFNNQWITTKKNEIVITS
                     LPAGKYRLLVEACNSDGIWNNEAKVLLINVAPPFYFSYWAIMLYILVALVMVLYLIYR
                     GQRRQQVKLEQQINEMKLRFFTNISHDLRTPLTLIITPLQTLLNDITDDSLKKKLEVM
                     FKNAQQLLSLINSLLDFRKLDVGAETLNLKPGNIVDLVREIYSSFAVYATERKVNFVL
                     NNSPENLWVEYDHDKIYKSIVNLLSNAFKYTPNGGTIELNLYIHETNVCVSVSDTGIG
                     ISDEDKELVFNRFYQTLHNSRKTGSGIGLHIVSEYIKLHNGSIDIADNKPSGCIFTLR
                     FPLIETTAVSVNPKNEYVEEYQDPQREEILPPKPVLLFVDDNQDLCEFIHDNLMNDYS
                     VLIANDGQEALVLLKQNDVNIVVSDIMMPVMDGIELCRQIKTNIEWSHIPVILLTAKT
                     ADEHKIEGLEIGADDYVTKPFNLDILKLRILKFFEWSLKSHKKFSQKLEVKPSEITIT
                     SLDEKLIEKAIQTVEANIGDTDFSVEVLCDLLGLSRGHLYRKLNAITGKGPLEFIRLV
                     RLKRGKQLMGKSQLTISEIAYQVGFNSPKRFAKQFREEFGMSPSEYVRMMKNEEIE"
BASE COUNT         2340 a         1064 c         1268 g         1993 t
ORIGIN      
        1 actatcaacc tgaaaaaatc aacgaagaag aatcctgggt ggacagttac gaagtttgta
       61 cgttcttgaa aataagtgaa cgtactctcc agcgccttcg caccaaagga cttatttctt
      121 attctatcat ttcaggtaaa acctattaca ccattgcgga agtaaaacgc atgttgaacg
      181 aacgtttggt acgaagtaac caggaagcac ttgacaactt aatcgaaagc cacaaaacct
      241 atgttgagca aagaagaaat actcgcacgg accgataaag gcttgaatgt tttcaaacat
      301 tatctgccat ttccgtttcg tgtagggcga aacttcctca atccattgta cgaagataaa
      361 aaagcttcct gcaatgtcta tttcgaccgg acaaacgatc agtacaaact gaaggactat
      421 gggaacgata actacagtgg ggattgcttc cactttgttg gaaaaataca aggaactgac
      481 tgccgtcacg cagacagttt catcgaaatc ctccaaaaga taaatcagga tttatgtttg
      541 ggactggata atgtttcaag caaccagccc caaaaaacca tgtctccatt gtctccaatc
      601 ttggaatcaa aagaagaaca acccaaacag cttaaaccgt tttccattaa agtcaaaccg
      661 ttttcggaac tcgaattgac ttattggcag caatacggaa tatcacttga aatcctgaag
      721 agataccagg ttgtttcgct aaaagaattc gcttccgaaa acaacgaagg caaaccctac
      781 aagcttacac cctctgacaa ggaaccaatc tttgcctatc agggaaaacg atacttgaaa
      841 ctttacagac ctttttcgga tgttcgtttt cagtatgctg gcgatttggg agacaaatat
      901 tgttttggat tggagcagct gccaccaaaa ggaaatatcc tttttatcat cggcggtgaa
      961 aaggacgtat taagtttagt cgcaaaaggt ttttcagcaa tatgtttcaa cagcgaaaca
     1021 tccaatattc ctcaaagcac aatccggaaa ctgacttacc gctttaagca cgttgttatt
     1081 ttatacgact gtgacaaaac aggtctggaa gcatctgcca aacacgagca gcaactatct
     1141 tcgcttggcg tgaaacggat gacattgcca ttaaaaggca caaaggaaga aaaagacatt
     1201 tctgactttt tcaaactcgg gaattcccgg gaaaactttc aaaagctatt tatacaattt
     1261 cttgacacta tctatgccga aaccatggca gttttaaaat catgcgaaat agatttcacc
     1321 aaaccaccca tatcagccga aatgataatt tcaatcaata acgtcccgct tggcacacaa
     1381 ggcaatttgt gctgtataac tggaggtgag gggacaggca aaagtaacta catctgcgcc
     1441 ttggttgctg gaacgttgaa tacggatgac gatgatatcg acaccttggg aacccgtatc
     1501 aaacccaacc ggcagagtaa agccgttctg ctttacgata ctgaacaatc cgaattgcag
     1561 ctttataaaa atacattgaa cagtctcaaa cgggcaaagc agaaacattt tcccgagagt
     1621 ttcagggcat attgtctcac gggtatgtct cgaaaagaac gacttcaagc aattattcaa
     1681 agcatggata aattttttta tgagtttgga ggtattcatt tggtgattat tgacggaata
     1741 gccgatttaa tccattcggc caatgatgaa gctgaaagca tccggattgt ggatgaactc
     1801 tatcgattgg ccggaatata tcagacctgc attgtctgtg tgctgcactt tatcccgaac
     1861 gggttaaaac tccgaggaca tttaggctcc gagcttcagc gaaaatccgc cggtattctc
     1921 tctattgaaa aagacgacca acccggagtt tccgttgtaa aagtgttgaa agtgcgcgac
     1981 ggcagtccgc tggatgtacc acttattcaa tttgcatggg acaaaaaaga agaaatgcac
     2041 gtctatttag gtgagaaaac caaggcagaa aaagaaaagc gcaaagaaaa cgaacttact
     2101 gccactgcca aaacaatctt cgcacaaaaa cgctattaca cctatcagga actaaccgat
     2161 aagctgcaag aatacctcga cgtaaaagaa cgcaccgcca aaggctatat caaattcatg
     2221 cgcgaaaaag acattatcct caaagatcct tcgaagataa gttattttgt gattgggcat
     2281 gggtaaggtt tttcaatatt tctttgccac aagtggttaa atgtgagtag cctccagtta
     2341 acttgctaga ctggaggatg ccaacacccg attacaccta cctcttaata tcgaggtttt
     2401 aaaaccattg atacaattaa tggaacatta actacccata cgtggtacaa atcagtactg
     2461 tgtgattgct tttgtttttt tacttttgca ttcttaattg aaacgcctca ttcaacagga
     2521 tggaatattt aaattataga aagttttaaa taatacaata taaaaaagat atattagtag
     2581 tacagataca tgctgttaag tttatattta cgtgttatag atatttgaaa aatgaatatc
     2641 tttgacacgt ttcttgatgt aattaaatca atttaaattg aaaataaaca ccgaaaatga
     2701 atacaataaa gttgttttta attatcaccc tgataggttt aaattcaata aatgttacag
     2761 gagaaagttc ctacaaattc tatcatttaa cagcagaaga tggactttca aataattcgg
     2821 tgcaggctat attaagggat agtcatggct ttttatggat tgggactggg tttggtttaa
     2881 atagatatga tggttatagc ttcaaaacat atttagccca accaaatgtg ccaaatacaa
     2941 tggttgcaaa ctatacatct ggattgcagg aggatggact taaaaatatt tggattgatt
     3001 atggaaataa ttatgtagtc tataaccctg aaaaggacaa ttttattact gatataaata
     3061 taatcctcga aaaattaggt gttaaaacta atggcaatcg taaaatatat gttgataaga
     3121 aaaaaaattt atttgttata actcttaacg aaatatattt ctacaatgta gctgctaaaa
     3181 agctaaatat ttacaagtca ccccaattta atttttccaa tattgaagtc agtgacgatt
     3241 taagtaattt gtacatcgtc gattccaaag atttttgctg gcaaatggaa aagaaatccg
     3301 gcgagttaaa aaaaatggct ttgccaacag taagtgattt taattatgag aataagcgca
     3361 ctaaaatctt tgctgattca ggtggaggtt tgtggttata ttgcggtaaa gatgaatatg
     3421 tatattttag acagaccaat tcttctctgt ggcagaaaat ctatttgaac tcttccataa
     3481 aatcacagaa tagcattttt tcgattgtag aagggcgtaa tggtcagatt tggattgcta
     3541 cagatcataa gggattgttt ctttatgaca agtcgactag cttgctgaaa aatattactt
     3601 cgaattcgct aagtccaact tcaatcgcat caaattatgt agctagtatt ttagttgata
     3661 atactggaac attatgggtc ggatatatca aaaatggaat ttcctttttc aatgaaagtt
     3721 ttcagaattt cattaatgtg caaaacgatc aatgcaagaa tatcagccgg attgttgaac
     3781 ttcgtaatgg aaatgtactt ttaggaacgg atggtaatgg tttgtatgaa acaaattata
     3841 atacaaataa tgtaaataag ttaccaattc ctaatactgc gataacagca ttgcttgaag
     3901 ataaaaatgg aaaagtatgg ataggtacgt atcagcaagg tttatattgc ctctatcata
     3961 ataaattgaa gcattttaca acaactaaca gtaacctgtc ttcagataat atctggggta
     4021 ttgttgagga taaatatgaa aatttatgga ttggaacttt aggtggaaaa atacataaat
     4081 acaatatcaa tgataataca aattattttg aaactccatt taaagatact aaatatattt
     4141 caggtatgtt ttatgatgga gataaaacta tttatgcaac cactggttac ggacttacca
     4201 taattgatat tgaaaaaaat acaaatcagg tttttttagg aaataaaaaa gggaatcagc
     4261 aacttaacca actacaaatt agtgttgtat ataaagatgg tagaaatctt ttatggattg
     4321 gtacgaatgc tggactttca atctgggatt tgaaaaaaga ctctttgtct tattttgata
     4381 tttcagatgg gttgagtggt aatatcatta gaggaattgc ggaggacaat tcacacaata
     4441 tatgggtaac tacgagtaaa ggattgtctg ttattatgtt ggataataac aatagaataa
     4501 gaatttgtag aaatttttcg attagagatg gtattaaaaa tgattatttt aataataatg
     4561 cgatttgtga attaaaaaat ggtaatatat tggctggaac aactgacgga tatattatca
     4621 ttaatcccct aaaagtgaca gcaagaaaag aaccgttgtc aagggtttat ttaactaagt
     4681 tgattgttgc taacactgta ataaatgtag attcagttta taatggtcac gtgattttaa
     4741 ataaatctat cgaattgctg tctgagctta atctgaaata taatgataaa ttggtgacat
     4801 tggaatttac aacagtcgat ttgataaatg ccaataaagt caaatataga tacaagattg
     4861 aagggtttaa taatcaatgg ataacaacta aaaagaatga aattgtaata acatccttgc
     4921 cggccggcaa atataggtta ttagtagagg cctgtaatag tgatggcatt tggaataatg
     4981 aagcaaaagt attgttaata aacgtagcac ctccttttta cttctcttat tgggctatta
     5041 tgctttacat attagttgct ttggtaatgg ttctgtatct aatttataga gggcaacgaa
     5101 gacaacaagt gaaacttgaa caacaaatca atgaaatgaa attgaggttt tttacaaaca
     5161 ttagtcatga cctgcgcact cctctaaccc ttatcataac ccctttgcaa acattgttaa
     5221 atgacataac agatgatagt ttgaagaaga aacttgaagt aatgttcaaa aatgcacaac
     5281 aacttttgtc attaataaac tcattacttg attttaggaa actggatgtg ggagctgaaa
     5341 ctttaaattt aaaacccgga aatattgttg atttggttag agagatttat tcgtcatttg
     5401 ctgtttatgc cacagagcga aaggttaatt ttgtattgaa caatagtcct gaaaacttat
     5461 gggtggagta cgaccatgat aaaatatata agtcaatcgt aaatttattg tcaaacgcat
     5521 ttaaatatac tcccaatggt ggaacaatag aattaaacct ttatatacat gaaacaaatg
     5581 tctgtgtcag tgtatctgat accggcatag gtatcagcga tgaggataaa gaattggtct
     5641 ttaatcggtt ttaccaaaca ttgcataatt caagaaaaac aggcagtggc attggtttac
     5701 atatagttag tgaatatatt aaacttcata atggctcaat tgacattgca gataataagc
     5761 caagtggttg tatttttaca ttgcgttttc cgctaattga aactactgct gtcagcgtta
     5821 atcctaagaa tgagtatgta gaagagtatc aagaccctca gcgtgaagaa atattacccc
     5881 caaagcctgt tctattattt gtagatgaca atcaggattt atgtgagttt attcatgata
     5941 atttaatgaa tgactattcg gtactcattg ctaacgatgg acaggaagca ttggtgctac
     6001 tgaagcagaa tgatgtaaat attgtagtaa gcgacataat gatgccggta atggatggga
     6061 ttgaactttg taggcaaatc aaaacaaaca ttgagtggtc tcacattcct gttattttgc
     6121 taactgcaaa aacagccgat gaacataaaa tagaaggtct cgaaataggt gccgatgatt
     6181 atgttaccaa accatttaat ctggatattt tgaagttgag aatattaaaa ttctttgaat
     6241 ggagtctgaa atcacacaaa aagtttagtc aaaagttaga agttaaacca agtgaaatta
     6301 ctattacatc cttagatgaa aaactaattg agaaagctat acaaactgta gaggcaaata
     6361 ttggtgatac cgattttagt gttgaagtgt tgtgcgacct attagggtta agtcgtggtc
     6421 atttgtatcg aaaactaaat gcaataacag gtaagggtcc tttggaattt attcggttgg
     6481 ttagattgaa aagagggaaa caacttatgg gaaaaagtca gttgacaatt tcagaaatag
     6541 cttatcaggt tggatttaac tcgcctaagc gctttgctaa gcaatttagg gaggaatttg
     6601 gtatgtcgcc atctgaatat gtaagaatga tgaaaaatga agaaatagaa taatacattt
     6661 atgca
//
LOCUS       DATDNM010000809         3598 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1591687, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000809 DATDNM010000000
VERSION     DATDNM010000809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1591687"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..544
                     /locus_tag="VI413_13510"
     CDS             <1..544
                     /locus_tag="VI413_13510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004308630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEY6915687.1"
                     /translation="MIAVNTQNILFVCGGAFDGIEKKIASRLNTRVVGYNAAKEHEAV
                     DKHNLLQYIAPQDLKSFGLIPEIIGRLPILTYLEPLDRTALRRILTEPKNSIIKQYTK
                     LFDMDGIELIFKEEVLEYIVDKAIEFKLGARGLRSITETIMMDEMYEMPSKSEKVLTI
                     ALPYAQSKIEKANINRLKTA"
     gene            811..3003
                     /gene="recQ"
                     /locus_tag="VI413_13515"
     CDS             811..3003
                     /gene="recQ"
                     /locus_tag="VI413_13515"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009859575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HEY6915688.1"
                     /translation="MAKLSALATQLKKNFGFDNFKGNQEAIIQNVLDGKDTFVLMPTG
                     GGKSLCYQLPSLLMEGTAIVISPLIALMKNQVDAMRNFSEEDGIAHFINSSLTKQAID
                     QVKTDILSGKTKLLYVAPESLTKEENIEFLKQLKISFYAVDEAHCISEWGHDFRPEYR
                     RIRPIINDIGVAPLIALTATATPKVQHDIQKNLGMLNATVFKSSFNRANLYYEVRPKT
                     NNVDKDIIKYIRSQAGKSGIIYCLSRKKVEELSETLVMNKIAALPYHAGMDSAQRSEN
                     QDKFLMEKVEVIVATIAFGMGIDKPDVRYVLHYDMPKSLEGYYQETGRGGRDGGEGQC
                     IAFYAYKDLDKLRKFMQGKPVAEQEIGNQLLLETQAYAESSVCRRKLLLHYFGEEYME
                     DNCGCCDNCMKPRKFIEGQELLSLVLETILIVKEKFKAEHIVDILKGNETSDVKSYQH
                     DELENFSSASDEDEKLLHAVIRQAMIAGFLSKDIENYGLLKVTAAGKAYLKKPQPFPI
                     VKDNEFDDDEEETNVGGKSGGGTCAADDVLFSILKDLRKKLSKKLEVPPFVIFQDPSL
                     EAMATSYPVTMDELQNIPGVGAGKAKRYGEEFLKVIKEHVKENEIIRPEDLRVRTVAN
                     KSKLKVSIIQSIDRKIALDDIAVAKGLDISELLDEIEAIVYSGTKINIDYFLNEVMDP
                     DHVDEIFDYFSSAETDKIDAALDELGEDDFSETEVRLVRVKFLSEIGN"
     gene            3190..3417
                     /locus_tag="VI413_13520"
     CDS             3190..3417
                     /locus_tag="VI413_13520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004368621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HEY6915689.1"
                     /translation="MKKAGVFPRLYSFYRDGFRNMTVGKTLWIVVLIKLFIMFAVLRL
                     FFFPNYLNSNFDNDKTKADHVRQELIQKSNR"
BASE COUNT         1192 a          663 c          769 g          974 t
ORIGIN      
        1 aatgattgcc gtaaacacac agaatattct gtttgtatgc ggtggtgctt tcgacggcat
       61 tgaaaagaag attgcttcgc gcctgaacac ccgtgtagtt ggctacaacg ctgccaaaga
      121 gcacgaagcg gtagacaaac ataacctgct tcagtatatt gctccgcagg atttaaaatc
      181 attcgggttg attccggaaa ttatcggccg tttgcctatc ctgacatatc tggaaccatt
      241 ggaccggacc gccctgagac gtatcctgac cgaaccgaaa aattcaatca tcaagcaata
      301 cacaaagcta ttcgatatgg atggcattga attgatattc aaagaagaag ttttggaata
      361 tattgtggac aaagcaattg aattcaagtt aggagcacgt gggttgcgtt cgataacaga
      421 aacaatcatg atggacgaaa tgtatgagat gccttccaaa agcgagaaag tattgacaat
      481 cgctttacct tacgctcaaa gcaaaattga gaaggcaaat ataaaccggc tgaaaactgc
      541 ttaatcagaa tacataacgt atttattacc tgacaattaa tccaaacaat caggatgttg
      601 actaatcaaa acagttaata tcctgatttt tttttcaaaa catgttgtat atttcaaatc
      661 tgtttatatt tttgttagac aaaagaatag cagttgataa tacaaattag gtattattca
      721 caataaacag caaaaaaata gttgtttacg tgcatttaat tcgacaataa atactacttt
      781 cgcattcatt tttttacaca agtcacaaat atggccaaac tatctgcttt agcaacgcag
      841 ttgaaaaaaa acttcggttt cgacaatttc aaaggaaacc aggaagcgat tattcaaaat
      901 gtgcttgacg gcaaagacac ttttgtgtta atgccgacag ggggaggaaa gtctttgtgt
      961 tatcagctcc cttctttgct tatggaagga acagcgattg tcatttcccc gctgattgct
     1021 ttaatgaaga atcaggtgga tgccatgcgc aatttcagtg aagaagatgg gatagcccac
     1081 tttattaatt cctcgcttac caagcaggct attgatcagg tgaaaacaga tattttatcc
     1141 ggaaaaacaa agttattgta tgttgccccg gagtcgctga ctaaagaaga aaacattgag
     1201 ttcctgaaac aactcaaaat ttcattttac gcagtagatg aagcccactg tatttcggaa
     1261 tggggacacg atttccgccc tgaataccgt cggatcagac cgattattaa tgatatcggt
     1321 gttgcgccgc ttatagcgct tacggctacg gccacgccaa aggtacagca cgacatccag
     1381 aaaaacctgg gcatgctgaa tgcaacggta ttcaaatcgt cgtttaaccg tgccaattta
     1441 tattacgagg ttcgcccgaa aacaaataat gtagacaagg acattattaa atatatacgt
     1501 tcgcaagccg gaaaatcggg tattatttat tgcctgagcc gcaaaaaagt ggaggaatta
     1561 tccgaaacgc ttgttatgaa caaaatcgcc gcacttcctt accatgccgg tatggactcg
     1621 gcacaaagaa gtgaaaacca ggataaattc ctgatggaaa aggtggaagt catagtggca
     1681 accattgctt ttggaatggg aattgacaaa cccgatgttc gttacgtatt gcattatgac
     1741 atgccaaaga gcctggaagg ttattaccag gagacaggcc ggggtggtcg tgatggcggc
     1801 gagggacaat gtattgcatt ttacgcttat aaagatttag ataaactacg caaatttatg
     1861 caaggcaaac cagttgccga gcaggaaatt ggcaatcaac tattattgga gactcaagct
     1921 tacgctgaat cttccgtgtg ccggcgcaaa ctgctgctcc actattttgg agaagagtac
     1981 atggaagata actgcggatg ttgtgacaat tgtatgaaac cacgaaaatt tatagaagga
     2041 caagaattat tgtcattggt attagaaact attctaattg taaaagagaa gttcaaagct
     2101 gaacatattg tagacatcct gaagggaaat gaaacttcgg atgtaaaatc gtatcaacat
     2161 gacgaactgg agaatttcag ttcggcgtcg gatgaagatg aaaaactgct gcacgcagtg
     2221 attcgccagg ctatgattgc cggatttttg tcgaaagata tcgagaacta cgggttgctt
     2281 aaagtaactg cggcaggtaa ggcttatctg aaaaaacctc agccattccc tattgtaaaa
     2341 gacaatgagt ttgacgatga tgaagaagag acaaacgttg gcggaaaaag cggtggtgga
     2401 acctgcgcgg ccgatgatgt tctgttctct atactgaaag atttacgcaa aaagttatcg
     2461 aaaaagctgg aagttccgcc tttcgtaatt ttccaggatc cgtcgctcga agctatggct
     2521 accagctatc cggttaccat ggacgaattg caaaatattc cgggtgttgg ggcaggaaaa
     2581 gcaaaacgtt acggcgaaga attcctgaaa gtgattaaag aacacgtcaa agaaaacgaa
     2641 attatccgtc cggaagattt gcgcgttcgc acggtagcca acaaatcgaa attaaaagtt
     2701 tctattatcc agtctatcga ccgtaagatt gcacttgatg atattgcggt ggcaaaaggc
     2761 cttgacatta gtgaattgct tgacgaaatc gaagctattg tatactcggg aacaaaaatc
     2821 aacattgatt atttcctgaa tgaagttatg gacccggatc atgttgacga aattttcgac
     2881 tactttagct ctgctgaaac tgataaaatt gatgcagctt tggatgagtt gggcgaagat
     2941 gacttcagcg agaccgaagt acgtttggtg cgcgtaaaat tcctttctga aataggaaac
     3001 taaaacaata aaaaacagac tgaccgtcgg aagaagttct tccgacggtt tttttatgtc
     3061 taaaactgac tgtttaagat agtatttgaa agaaaattaa taaaattaag tacacttttg
     3121 taaaaatacc aaatttattg atatttttgt atcgctaatc aaagtgacaa aagcagtcga
     3181 ataaacaata tgaaaaaagc aggtgttttt ccccgattat atagcttcta ccgggatgga
     3241 tttcggaaca tgaccgtagg caaaacccta tggatcgttg tgcttattaa actttttata
     3301 atgtttgcag tactgcgact gttctttttt cccaattacc tgaacagcaa ttttgataac
     3361 gacaagacta aagctgatca cgttcggcag gaattaattc agaaatcgaa cagataaaag
     3421 aatcaaaagc cgggaatcaa ggcaagaaag atttcaccaa ccaggaacaa agacaatctt
     3481 attcttatta cgataataat taaacatttg aaaaaattat ggaattactg gatgcatcat
     3541 tagtgaattg gtcccgggca caatttgcca tgacctcaat gtaccactgg cttttcgt
//
LOCUS       DATDNM010000810         3228 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1591762, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000810 DATDNM010000000
VERSION     DATDNM010000810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3228
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1591762"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            95..1375
                     /gene="metK"
                     /locus_tag="VI413_13525"
     CDS             95..1375
                     /gene="metK"
                     /locus_tag="VI413_13525"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008769127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEY6915690.1"
                     /translation="MGYLFSSESVSEGHPDKVADQISDAILDSFLAQDKDSKVACETL
                     VTTGQVVVAGEVKSTAYVNIQEVARRVINRIGYTKSEYKFDGDSCGIFSSLHEQSSDI
                     NQGVERANPMDQGAGDQGMMFGYATNETKNLMPIALDLSHALVEELAAIRREGKFMTY
                     LRPDSKSQVTIEYDNNNQPVKVNTIVVSTQHDDFIQPTPDKPQAHVDEQMLAIIREDV
                     KNILIPRVKALDVQFAQLFKDDFVLHVNPTGKFVIGGPHGDTGLTGRKIIVDTYGGKG
                     AHGGGAFSGKDPSKVDRSGAYAARHIAKNIVAAGLANEVLVQVAYAIGVAKPMNLYIN
                     TYGTAKVQLTDGEIATKIEKLFDMRPKAIEERLKLRFPIYEETASYGHVGRTPVEVTK
                     SFKDGNGREFTQTVELFTWEKTDKVADIKVEFGL"
     gene            1987..>3228
                     /locus_tag="VI413_13530"
     CDS             1987..>3228
                     /locus_tag="VI413_13530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY6915691.1"
                     /translation="MWNKIRTLLGIVGEFIKVLLVKFFNQLSVWWRKFITWRKARRQR
                     FRNLVWYRKIANIFITSIVLFLIYLFIVDVNFLWLFGKSPSMHSISNPEQSEASEIIT
                     ADGKILGKYFHENRTPVTYKEISPILIKTLISTEDERFYQHFGIDFQGIFAAIKDMTK
                     GRSRGASTITQQLVKNMYKTRNQYSTGLFGYIPGLKLIIMKTKEWTTAVKIEIFYSKQ
                     DILTMYFNTVDFGSNAFGIHTAAKTFFNTTPAKLNYEQSATLVGLLKATTTYSPISHP
                     KRSMERRNVVLENLVRHNVITQQQCDSLKKIPIQLNFSVEQTLDGEALHFRAYLDKYL
                     QDWEKETGYDIYSDGLKIYVTIDSRMQKYAEEAVDKQMRVIQKRFFEHWRGQNPWQDE
                     QHKDIVNFVEDIAKKTKYYSVL"
BASE COUNT         1031 a          519 c          670 g         1008 t
ORIGIN      
        1 ataaattaat tattattcat tcaattttac aatgtcggtt tccttcagtt ttcaacggaa
       61 tcacaacttg taaatgttta acttgtaaat taaaatggga tatttatttt catccgaatc
      121 ggtgtcagaa gggcatcctg acaaagttgc cgatcagatt tcagatgcca ttctggatag
      181 ttttttggct caggacaaag actctaaagt agcttgcgaa acgttggtta caacaggaca
      241 agtggttgta gcaggcgaag tgaaatcaac tgcttatgta aacatacagg aagttgcccg
      301 cagagtaatc aatcgtattg gctatactaa aagcgaatat aaattcgacg gtgattcttg
      361 cggaattttt tcatcattgc acgagcaatc aagcgatatc aatcagggtg tagagcgtgc
      421 caatccaatg gatcagggtg ccggtgacca gggaatgatg tttggatatg ccaccaacga
      481 aactaaaaac cttatgccaa ttgcactgga tctttcacac gcattggttg aagaattggc
      541 agctattcgt cgtgaaggaa aattcatgac ttaccttcgt cccgattcaa aatcacaggt
      601 gactattgaa tatgacaaca ataatcagcc ggttaaggtg aatactattg ttgtttctac
      661 tcaacatgat gattttattc agcctacacc agacaaacca caggctcatg ttgacgaaca
      721 aatgttagct attattcgcg aggatgtaaa aaatatattg atcccacgcg taaaggctct
      781 tgatgttcag tttgcacaat tattcaaaga tgattttgtg ttgcacgtaa acccaacagg
      841 aaagtttgta attggtgggc ctcacgggga cactggttta actgggcgta aaattatcgt
      901 tgatacttat ggtggaaaag gtgctcatgg tggtggtgct ttttcaggaa aagatccttc
      961 caaggttgac cgctctggag cttacgcagc tcgtcatata gccaaaaata ttgttgcagc
     1021 aggtttagcc aatgaagtat tggtacaggt ggcctatgcc ataggtgttg caaaaccaat
     1081 gaacttgtat ataaatactt atggaacagc aaaagtgcaa ttaactgatg gtgagattgc
     1141 aacaaaaatt gaaaaactgt tcgatatgcg tccaaaagct attgaagagc gtttgaaatt
     1201 acgtttccct atttacgaag aaactgcttc ttatggccat gttggccgca caccggtgga
     1261 agtaaccaag tcattcaagg atggtaatgg aagagaattt acgcagacag ttgaattgtt
     1321 tacctgggag aaaacagata aagttgctga tattaaagtt gaattcggac tttaatctga
     1381 ttcaggattg aaagtcgaat aaatttctaa gaacacccga tttgcattgt aagtcgggtg
     1441 ttcttttttc agaacaatag aacagtttta ttcgttttat gcagtatgta atgcctttct
     1501 attcagtttg atattaatca tgtgtgaatc ttcggtaatt ttatttgatg gcgtatgtaa
     1561 tctgtgctgt aattgggttc attttttaat tagcaaagat aaaaaggaat tatttctatt
     1621 cgcccagctt caatccgata ctgcaaaacg aattttggaa tctcttggtt taaattctga
     1681 taatttcgaa actgttgttt atatcaggaa aaatatctgt ttccagaaat ctgaagcagt
     1741 attggaaatt ctaacagatc tgggtggagc gtggagatta gtaggtgttt ttaaattgat
     1801 tcccagagtg gtacgtgatt ctatttatcg ctttgtagct gatatacgat ataatgtgtt
     1861 tgggaaaagt aaaagttgta tgattccttc aacaaaaatt caaaaaagat tcttaaccta
     1921 ggtggcgtaa aagatacaaa attccatctt ttaccttaac tttgcagcca aaatctgaaa
     1981 aacattatgt ggaataaaat taggacatta ctcggcattg ttggtgagtt tattaaggtc
     2041 ttgttggtga aattttttaa tcaactttct gtttggtggc gtaaattcat tacctggcgt
     2101 aaagcaaggc gccagcgttt cagaaatttg gtttggtata gaaaaatagc taatattttc
     2161 ataacttcca tcgttttgtt tttgatctat ttgtttattg tagacgttaa ttttttgtgg
     2221 ctgtttggaa aatcaccaag catgcatagt ataagtaatc cggagcaaag tgaagcttct
     2281 gaaattataa cagcagatgg gaaaatactc ggaaagtact ttcacgaaaa ccgtactccg
     2341 gttacctata aagagatttc tcccattctg ataaaaacgt tgatcagcac tgaggatgag
     2401 cgcttttatc agcatttcgg tattgacttt cagggaattt ttgctgcaat taaagatatg
     2461 accaaaggtc gtagccgggg tgcaagcacg attactcaac agttagttaa aaatatgtat
     2521 aagacacgta atcagtattc taccgggttg tttggataca ttccaggatt aaaactgatt
     2581 attatgaaaa ccaaggaatg gacaacggct gtaaaaattg agatatttta tagcaagcag
     2641 gatatcctta caatgtattt caatacagtc gatttcggta gtaacgcatt tggaattcat
     2701 actgcagcaa aaacgttttt taatacaact ccggctaaac taaattacga acaatctgcc
     2761 acattagtcg ggctattgaa agcaacaact acttatagtc caatttcgca cccaaaacgt
     2821 tcgatggagc gtagaaatgt ggtacttgag aatcttgttc gacataatgt gattacacag
     2881 caacaatgtg attcattgaa gaaaattcca attcagctaa actttagtgt tgaacaaaca
     2941 ctggatggtg aagcgcttca tttccgtgct tatttggaca aatatcttca ggattgggaa
     3001 aaagaaactg gttatgatat ttactcagat ggattgaaga tttatgtaac aattgattcg
     3061 cgtatgcaaa aatatgcaga ggaggctgtt gataaacaaa tgcgtgttat tcaaaaacgt
     3121 tttttcgaac attggcgagg gcaaaatcca tggcaggatg aacagcataa ggatattgtg
     3181 aattttgttg aggatattgc taagaaaaca aaatactatt ctgtatta
//
LOCUS       DATDNM010000811         4470 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1698987, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000811 DATDNM010000000
VERSION     DATDNM010000811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4470
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1698987"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            180..1103
                     /gene="rsgA"
                     /locus_tag="VI413_13535"
     CDS             180..1103
                     /gene="rsgA"
                     /locus_tag="VI413_13535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEY6915692.1"
                     /translation="MKGLVVKNTGSWYQVKTDSGELTECKIKGNFRMKEIRSTNPIAV
                     GDIVEFEKTVDGTAMIHTIVDRKNYIVRRSSNLSKQFQILAANLDLVALVVTVNYPET
                     SLVFIDRFLATAEAYRVPACIVFNKIDCYSSDETEYLDGLVNLYTSLDYPTFKISAKN
                     SVNIDELMAFLSGKTTLFSGNSGVGKSTLINAIAPHSLAKTGEISSYHNKGMHTTTFS
                     EMFELLSGGHIIDTPGIKGFGTIDMEEAEISHYFKEIFKVSTDCRFTNCTHVHEPGCA
                     VQEAIDKHFISLSRYQSYLSVLKDCNEGKYR"
     gene            1236..1736
                     /locus_tag="VI413_13540"
     CDS             1236..1736
                     /locus_tag="VI413_13540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEY6915693.1"
                     /translation="MAQHQIDRLDKKILQLISQDARIPFLEVARECNVSGAAIHQRIQ
                     KLRNTGIIKGSEFVVDTYKVGFQTCAYIGIILSDIKMFNNVVEELKKVPEVVECHYAT
                     GKYSMFVKIYAKDNRHLLQIILEHLTLIQGIAHTETFQISLDEIFRRQLSVFEIDSNV
                     DVIEEE"
     gene            complement(1808..2953)
                     /locus_tag="VI413_13545"
     CDS             complement(1808..2953)
                     /locus_tag="VI413_13545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915694.1"
                     /translation="MKKFYQFLLLCFVVLFVSACSTGHTAYKQGDYYKACLEAIERLR
                     SNPNSQKSQFVLTKAYPLAKKEAQREIDNAQLANGVDQYDILVYQYERMNQLANAIFH
                     SPKANQLIPQPTEYIAELSNAKQMAAEQAYNMGIKAVEANTIEQARLGFQFFTKANEY
                     VYGYKDVIHKIEEARYYATLRVIVQRPYTSNKYQYSADFFYNNLLAEMSQNSKNRFVR
                     FFSPEEASAENMRDPHQYIYLNFEDFSVGNIRETSNTVDVKRDSVIVGTVKVEGKTYN
                     TYNTVKAKLTTFRQELSSGGVLSLRIVDAQNNRELQLRNFTGQYVWVTDWATFQGDDR
                     ALTNEQKKMCGQKPQLPPTHQDLFVGFTKPIYTQAVSYVRSVYNKYY"
     gene            complement(3016..>4470)
                     /gene="argS"
                     /locus_tag="VI413_13550"
     CDS             complement(3016..>4470)
                     /gene="argS"
                     /locus_tag="VI413_13550"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005791189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEY6915695.1"
                     /translation="DADLMMIEYSSPNTNKPLHLGHIRNNLLGFSMAEIQKANGWKVV
                     KTNIVNDRGIHICKSMLAWKLFGNGETPASTGMKGDHLVGKYYVVFDKAFKAEIKELM
                     DKGMTEEEAKKSAPLILEAQKMLLAWENNDAEVRQLWEMMNGWVYEGFDKTYKQLGVD
                     FDKIYYESETYLEGKSEVERGEANKAFYRREDGSVWADLTSDGLDEKLLLRADGTSVY
                     MTQDIGTAKLRYNDYPINKMVYVVGNEQNYHFQVLAILLDKLGFEWGKSLVHFSYGMV
                     ELPEGKMKSREGTVVDADDLMAEMIETARETSQELGKLDNCTPEEIEAIARMVGLGSL
                     KYFILKVDPRKNMTFNPKESIDFNGNTGPFIQYTHARIKSVLRKAVDQGIDFSTLSDT
                     QLAISEKESYLIQLLTEFPAVVAQAGEEFSPALIANYIYELVKEYNQFYHDFSILKEE
                     NANLKQFRLVLSESIASVIKTGMRLLGIDVPERM"
BASE COUNT         1364 a          944 c          798 g         1364 t
ORIGIN      
        1 aattatgggg ataagttaca attttatata acagctacag aagcatttta atatgatgat
       61 tggagaattg tgataatgtg gtgatgtgtt gatgtgttga tttggaaatt aataattaat
      121 agaataatac cgatgttagg cagaaattat acaatactta ccatttactt ctgaataata
      181 tgaaaggttt agttgtaaaa aatacaggaa gttggtatca ggtgaaaacc gatagcggcg
      241 agttgaccga atgcaaaatt aaaggtaatt ttcgcatgaa ggaaattcga agcaccaatc
      301 ctatagccgt aggcgatata gtggagtttg aaaaaaccgt tgatggaacc gctatgattc
      361 acacaattgt agatcgcaag aattatattg tccgacgatc ttctaaccta tccaaacaat
      421 ttcagatttt agccgcaaat ctcgatttgg tagcactggt tgtaaccgtg aattatccgg
      481 aaacatcact ggttttcatt gaccgttttc ttgcaactgc agaggcgtac cgcgttccgg
      541 cttgtatagt tttcaataaa atcgattgct attcctccga tgaaactgaa tatctggatg
      601 gattagtaaa tctctacaca tctctggatt atcctacatt caaaatttca gccaaaaact
      661 ctgttaatat cgatgaatta atggcgtttt taagtgggaa aaccacacta ttttcaggga
      721 actcaggggt tggcaaatcg acattaatca atgccatagc accacactca ttagcaaaaa
      781 cgggcgaaat atcatcctat cacaacaagg gaatgcacac taccactttt tccgaaatgt
      841 ttgaattgct ttccggcggc catattattg acaccccggg aatcaaaggc tttggaacca
      901 ttgacatgga agaagcagaa ataagccatt attttaaaga aattttcaaa gtctcaactg
      961 actgtagatt tactaattgc actcatgttc atgagcctgg atgcgctgta caggaagcca
     1021 ttgataaaca tttcattagc ctgtcaagat atcaaagcta tttgagtgtt ctcaaagatt
     1081 gcaacgaagg aaaatatcga taaaatgaat attattacac atttaactat caatttattc
     1141 gaaaaattgg cagaaataca aaaatattaa atacatttgc attaaaattt caagatttaa
     1201 aaccaaccga acattattca ggaaaattaa acaccatggc acaacatcaa attgatagat
     1261 tagacaaaaa aatactacag ctcatttcgc aggatgcccg aattccattt ttggaagttg
     1321 cccgcgaatg caacgtttcc ggtgcagcca ttcaccaacg catacaaaaa ctccgcaaca
     1381 caggaatcat taagggatct gaatttgtgg ttgacaccta taaagtgggt tttcaaacct
     1441 gcgcctatat cggcattatt ctcagcgata ttaaaatgtt taataacgtg gtagaagaac
     1501 ttaagaaagt tcccgaagtg gtggaatgcc attatgccac cggcaaatat tctatgtttg
     1561 tgaaaatata cgccaaagat aatcgtcatt tgttacaaat cattttggag catttaacgc
     1621 tcatccaggg cattgctcat accgaaactt tccagatttc gttggacgaa atcttccgcc
     1681 gtcagttatc ggttttcgaa attgattcaa acgtcgatgt tattgaagaa gaatagattt
     1741 gaattaatca taaacagaaa acgcctcatt agttgaggcg ttttctgttt atgattacct
     1801 atcattctca ataatactta ttatatacgg agcgcacata agaaactgcc tgcgtgtaaa
     1861 tcggttttgt gaaccccaca aacaaatcct gatgagttgg aggaagctgc ggcttttgtc
     1921 cgcacatttt cttttgctcg tttgtcaatg ctctgtcgtc accctgaaaa gtagcccaat
     1981 cagtaaccca aacatattgc cctgtaaaat tccgcaactg gagttcacga ttattttgag
     2041 catcaactat acgcaaactc aatacaccac ccgaactaag ctcctgccga aacgtagtga
     2101 gctttgcttt taccgtatta taggtattgt aggttttccc ttccaccttc actgtaccca
     2161 caatcacact atcacgtttt acatcaacag tattgcttgt ttcgcgaata ttacctaccg
     2221 aaaaatcttc aaaattcaaa taaatatact gatgcgggtc acgcatattt tcggcagatg
     2281 cttcttcggg cgagaaaaac cggacaaaac ggtttttact gttctgactc atttcggcca
     2341 acaggttatt gtagaaaaaa tcggcagagt actgatattt attgctcgta taaggccgct
     2401 gcacaataac gcgcaaagtt gcataataac gtgcttcctc aatcttatga atcacatctt
     2461 tatatccata aacatactca ttggctttgg taaagaactg aaagcccaga cgcgcctgtt
     2521 ctattgtatt agcttcaacc gcctttattc ccatattgta agcttgttcg gcagccatct
     2581 gcttagcatt gctcaattcg gcaatatact cagttggttg agggatcagt tgatttgctt
     2641 tcgggctatg aaaaatagca ttagctaact ggttcattcg ttcatactga taaaccaata
     2701 tatcatactg gtcaactcca tttgccagtt gggcattatc aatttcacgc tgagcttctt
     2761 ttttcgccaa aggatacgcc ttagtaagca caaactggga tttctgacta tttggattag
     2821 aacgcaaccg ctcaatagcc tctaagcaag ccttgtagta atcgccttgt ttataagcgg
     2881 tatgacccgt tgaacacgca gatacaaaaa gaacgacaaa acagagcagg agaaattgat
     2941 agaatttttt cataactgaa ttgtaaatag tgaaactttt ccgtctaatg acgggtgatt
     3001 aattgcaaat gatttttaca ttctttctgg cacatcaata ccaagcaaac gcatacctgt
     3061 ttttatgact gaagcaatgg attcggaaag caccagcctg aattgtttca ggtttgcatt
     3121 ttcttctttt agaatagaaa aatcgtgata gaactgatta tattccttta ccaactcata
     3181 aatatagtta gcaatcagtg ccggactaaa ctcctcccct gcctgggcaa ccacagctgg
     3241 gaactctgta agtaattgaa tcagatagct ctctttttcc gaaattgcca attgagtatc
     3301 gctcaaagta ctgaaatcaa ttccctgatc aacggctttg cgcaatactg acttgattcg
     3361 tgcatgcgta tattgaataa acggacctgt attcccgtta aagtcaatcg actcttttgg
     3421 attgaaagtc atattcttac gtggatctac tttcaaaata aagtatttca aggagcctaa
     3481 gccaaccatg cgggcaatag cctcaatttc ttccggagta cagttatcca gctttccgag
     3541 ttcctgtgaa gtttcgcggg cggtttcaat catttctgcc atcaaatcgt cagcatcaac
     3601 tactgttcct tcacggcttt tcatttttcc ttctggcagt tctaccatgc catacgaaaa
     3661 gtgtaccaga ctttttcccc actcaaaacc aagtttatcc aacaaaatgg ccagtacctg
     3721 aaaatgatag ttttgctcat tcccaacaac gtaaaccatt ttattgatgg ggtaatcgtt
     3781 ataacgaagt ttggccgtac caatatcctg agtcatatac acagaagttc catctgcacg
     3841 caacaaaagc ttttcgtcca atccatccga agtcaaatcg gcccaaaccg aaccatcctc
     3901 gcggcgataa aacgctttat ttgcttcacc tctttctact tccgattttc cttcgaggta
     3961 agtttctgat tcgtaatata ttttgtcgaa atcaacgcct aactgcttat aagttttatc
     4021 gaaaccttcg tacacccagc cgttcatcat ttcccacaac tgacgtactt cggcatcatt
     4081 gttttcccac gcaaggagca ttttttgagc ttcgagaata agcggagccg atttcttggc
     4141 ttcttcttcc gtcattcctt tgtccatcag ttctttgatc tctgctttaa aggctttatc
     4201 aaaaaccacg taatacttcc ctaccagatg atcgcctttc atgccggtac ttgccggggt
     4261 ttcaccattt ccgaaaagtt tccaggcgag catggattta caaatatgaa taccacggtc
     4321 gtttacaata tttgttttta ccaccttcca gccgtttgcc ttttgaattt cagccatact
     4381 gaatccgagt aaattattgc gtatatgtcc taagtgaagt ggtttattcg tatttggcga
     4441 agaatattca atcatcatta aatcagcatc
//
LOCUS       DATDNM010000812         3749 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_844606, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000812 DATDNM010000000
VERSION     DATDNM010000812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3749
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_844606"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VI413_13555"
     CDS             <1..200
                     /locus_tag="VI413_13555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEY6915696.1"
                     /translation="KATREVVAQNNIDATISKVEDIVEIMKFNVVTTPALVVDGKVVL
                     KGRVPSNNELKEILTAKIYRV"
     gene            197..622
                     /locus_tag="VI413_13560"
     CDS             197..622
                     /locus_tag="VI413_13560"
                     /inference="COORDINATES: protein motif:HMM:NF040494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrophenyl compound nitroreductase subunit ArsF
                     family protein"
                     /protein_id="HEY6915697.1"
                     /translation="MKKIIPALVLLVVFISVFTANSVAADNKNQTSVSKSSKIEVYYF
                     HYTRRCVTCQAVETESQKAISTLYPKEIKAGRIKFIGVNLDDKGSEVLAAKCKAEGQA
                     LLVIKDNKRIDLTEQGFMYAKSAPEKLKAELKKVIDMLL"
     gene            637..1335
                     /locus_tag="VI413_13565"
     CDS             637..1335
                     /locus_tag="VI413_13565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005655271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic aminobenezylarsenical efflux permease
                     ArsG family transporter"
                     /protein_id="HEY6915698.1"
                     /translation="MDILQSILENSQYAFLTAILLGLMTAISPCPLATNISAIGFISR
                     NIENRPRVFINGLVYTLGRAISYTGLALIIFFGASKMQISLIFQGWGEKLLGPILILI
                     GLFMLDIIKINFPGFSTLTNKIGEKGEGSYWSTLLLGMLFALAFCPYSGVLYFAMLIP
                     MTVASASGLYLPVLFAIATGLPVILFAWLIAFAVGNVGKLYNQIKTFELWFRRIVSIL
                     FIGVGVYYLIIFFI"
     gene            1348..1575
                     /locus_tag="VI413_13570"
     CDS             1348..1575
                     /locus_tag="VI413_13570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_240162629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY6915699.1"
                     /translation="MDEIICYCKQITRSEIEKAIFEGAKTFKDIQEITGACTGNQCKE
                     MNPSGECCSMEIFAILKENKPKTTGSCCCCG"
     gene            1617..2636
                     /locus_tag="VI413_13575"
     CDS             1617..2636
                     /locus_tag="VI413_13575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEY6915700.1"
                     /translation="MRLNKNIIIPLILLPAWYVVYANLQPATDWFIDTILGMTKGNHL
                     TESLRFFIFEFPKVLLLLAMIIFFVGIIRSYFTAERTRKALEGKKTFTGNVMAAGLGI
                     VTPFCSCSAIPLFLGFVESGVPLGVTFSFLIAAPMINEVAVILLYGMFGWKVAAIYIG
                     TGLTIAIAAGWIIGKLKLEKWVEDWVYATKLGETDAEVEKIAFSGRISMGYDAVKEIV
                     GKVWLYVALGILVGAGVHGYVPQEFMASLMGKSAWYSVPLSVLIGIPLYSNAAGIVPI
                     VSVLIEKGASLGTALAFMMSVIALSLPEMIILRKVLKLPLILTFIAVVGGGIMIVGFL
                     FNWIM"
     gene            2730..3068
                     /locus_tag="VI413_13580"
     CDS             2730..3068
                     /locus_tag="VI413_13580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEY6915701.1"
                     /translation="MRKPEVFEKELQELAGFAKVISHPARLAILKYLAETKTCISGDI
                     SDKLPLSRTTVSQHLKELRDMRLIHGEIDGLKINYCLCNSTISKHKALFDAFFDKIES
                     VEINCETNCK"
     gene            3076..3501
                     /locus_tag="VI413_13585"
     CDS             3076..3501
                     /locus_tag="VI413_13585"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HEY6915702.1"
                     /translation="MKVLILCTGNSCRSQMAHGFLQSFDKDLTVCSAGTEASGKLNAK
                     AVKAMAEAGIDVSHHTSDSVEKYLGEEWDYVITVCGGANESCPAFIGKVKHRLHIGFD
                     DPSHAVGTDEFIWSEFIRVRDEIKEGFYKFYVEQIKPQL"
     gene            3498..>3749
                     /locus_tag="VI413_13590"
     CDS             3498..>3749
                     /locus_tag="VI413_13590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite S-adenosylmethyltransferase"
                     /protein_id="HEY6915703.1"
                     /translation="MKAEDLKFVVQEKYGEIAKQSKIQNETSCCGVGGCCTIDYAIFA
                     ESYNQEKGYNPDADLGLGCGIPTQFATIKEGDSVLDLGSG"
BASE COUNT         1160 a          691 c          800 g         1098 t
ORIGIN      
        1 aaaaagccac acgcgaagtt gttgctcaaa acaacattga cgccacaatc agcaaagtag
       61 aagacattgt agaaatcatg aaattcaatg ttgtgaccac acccgcattg gtagttgacg
      121 gaaaagttgt actaaaagga cgtgtaccgt caaataatga actaaaagaa attctgacag
      181 ctaaaattta tagagtatga aaaaaatcat tcctgcatta gtactactgg ttgtgttcat
      241 ttcagttttt actgcaaata gcgttgctgc tgacaataaa aatcagactt ccgtttcgaa
      301 atctagtaaa attgaagtgt attattttca ttacacccgc cgctgcgtaa cttgccaggc
      361 agtagaaacc gaatcccaga aagctatatc caccctatac ccaaaggaaa taaaagccgg
      421 gcgaataaaa ttcattggtg tgaatcttga cgacaaagga agcgaggttt tggctgcaaa
      481 atgcaaagcc gaagggcagg cattactcgt aatcaaggac aataaacgta tagacctgac
      541 agaacaagga tttatgtatg caaaaagcgc acctgaaaaa ctgaaagcag aactaaaaaa
      601 agtaattgac atgttgcttt aacccaaaat tgaaatatgg atattttgca aagtattttg
      661 gaaaattcgc aatatgcctt tctgacagcc attctacttg gtttgatgac agcaatcagc
      721 ccctgcccat tggctacaaa catttcggct attgggttca tcagtcgcaa tattgagaat
      781 cgtcctcgcg tgtttatcaa tggcttggtt tacacacttg gcagagcaat aagttataca
      841 ggcctggcac tcatcatttt ctttggtgca agcaaaatgc aaatctccct gatttttcag
      901 ggctggggtg aaaaactgct gggacctatt ctgatattaa tcggtttatt tatgcttgat
      961 attatcaaaa taaatttccc cggtttttca actttgacca ataaaatagg agaaaaaggc
     1021 gaaggaagtt attggagcac attattactg ggaatgcttt tcgcactggc attttgcccc
     1081 tatagcggcg tgctatattt tgctatgctc attccaatga cagtagcgag tgcaagcggt
     1141 ctgtacctgc ctgttttatt tgcaattgcc accggcttgc ccgttatact ttttgcctgg
     1201 ttaatagcat ttgccgtcgg gaatgttggc aaactataca atcagataaa aacttttgaa
     1261 ctttggttca ggcggatagt ttccattcta tttatcggcg tcggagtcta ttatttaatc
     1321 attttcttta tttaaaccgt tgcatttatg gatgaaataa tatgctattg caaacaaatt
     1381 accagaagcg aaattgaaaa agccattttt gaaggcgcaa aaacatttaa agatattcag
     1441 gaaataaccg gagcctgcac cggaaatcaa tgcaaagaaa tgaatccttc gggagaatgt
     1501 tgttccatgg agatatttgc aatactgaaa gagaataaac ccaaaacaac gggttcatgt
     1561 tgctgttgcg gctaatttta tttatcacag aaacaagaaa tacaagtgtt tagaacatga
     1621 gattgaataa gaatattatc attccactga tattgttacc tgcctggtac gtagtttacg
     1681 caaacctgca acctgcaacc gactggttta tagatacgat tttaggaatg acaaaaggca
     1741 atcaccttac agaatcctta cggttcttca tttttgaatt tccaaaagta ttattgctgt
     1801 tggcaatgat tatcttcttc gtcggaatta tccgcagcta tttcactgcc gagcgcaccc
     1861 gcaaagcact ggaaggcaaa aaaacattta ccggaaatgt tatggcagcc ggacttggaa
     1921 ttgtaacgcc tttttgctcc tgctcggcta ttccgttgtt tcttggtttt gtagaatctg
     1981 gcgtaccgct tggtgtaact ttctcgttcc tgattgcggc acccatgatt aacgaagttg
     2041 ccgttatact tctctacggt atgtttggct ggaaagtagc tgccatttac attggcaccg
     2101 gattgacaat tgccattgca gccggttgga ttattggcaa actgaaactt gaaaaatggg
     2161 tggaagattg ggtttatgca actaaacttg gagaaaccga tgcggaagtt gaaaaaatcg
     2221 cattttccgg aagaatctca atgggctacg atgctgtaaa agaaattgtg ggcaaagtct
     2281 ggttatatgt agctttagga attttagtgg gtgccggcgt acacggctat gttccacaag
     2341 agtttatggc ttcgctgatg ggaaaatctg cctggtattc tgttccactt tcggttctca
     2401 ttggtattcc gttatactcc aatgcagctg gtatcgttcc tatcgtttcg gttttaattg
     2461 aaaaaggtgc atcactcgga acagcgctgg catttatgat gtcggtaatt gccttatcgc
     2521 tgcccgaaat gattatcctc agaaaagtac tgaagctacc attgatattg acttttatag
     2581 ctgttgttgg tggcggaatt atgattgttg gttttctgtt taactggatc atgtaatggc
     2641 aactatcagg aatgtaacag aaatttaata tgaaataatt ttattttcaa aaactatgtc
     2701 gtatgtttgc gacataaaac acaacaaaca tgagaaaacc ggaagtattt gagaaagagc
     2761 tacaagagtt ggcaggattc gctaaagtaa tttcgcatcc ggcccgtttg gccattttga
     2821 agtatttagc cgaaacaaaa acctgcattt cgggtgatat ttctgacaag ttacctttga
     2881 gccgaactac cgtgtcacaa catctgaaag aattgcgtga catgagattg attcatggcg
     2941 aaatcgatgg tctaaaaatt aattattgtt tgtgcaattc aacaatatca aaacacaaag
     3001 cgttgtttga tgcattcttt gataagattg aatctgtaga aataaattgt gaaacaaatt
     3061 gtaaatgaaa aagatatgaa agttttaatt ctttgtacag ggaatagttg ccgcagccaa
     3121 atggcccatg gttttttaca atcgttcgat aaagacctta ctgtgtgttc tgcaggtacc
     3181 gaagcaagcg gaaaactcaa tgccaaagca gtaaaagcca tggcagaagc cggcatagac
     3241 gttagtcatc acacctccga ttctgtcgaa aaatatctag gtgaagaatg ggattatgta
     3301 atcaccgttt gtggtggcgc caatgaaagc tgccctgcat ttatcggcaa agtgaaacat
     3361 cgcttgcaca taggctttga cgacccgagc cacgccgttg gtaccgacga gtttatctgg
     3421 agtgaattta ttcgtgtccg ggacgaaatc aaagaaggtt tttataaatt ttatgtagaa
     3481 caaatcaaac cacaattatg aaagcagaag atttaaaatt cgttgtacag gaaaaatacg
     3541 gcgaaatagc caaacagtcg aaaattcaaa acgagacttc gtgttgtggt gttggcggtt
     3601 gttgcacgat agattatgcc attttcgccg aaagttataa tcaggaaaaa ggctataacc
     3661 ccgatgccga tttaggtttg ggatgcggca ttccaactca gtttgcaaca ataaaagaag
     3721 gtgattcggt gcttgatttg ggcagtggc
//
LOCUS       DATDNM010000813         2019 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_631131, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000813 DATDNM010000000
VERSION     DATDNM010000813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_631131"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..750
                     /locus_tag="VI413_13595"
     CDS             <1..750
                     /locus_tag="VI413_13595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEY6915704.1"
                     /translation="PSIIHAWISKTQHELVNIDGTLVGQTLVSVGGSLATIFIIPVYV
                     FVILYYQPLLMEFIHRLFGKTHLVQVGEIITQTKSVIQRYLVGLIFEAIIVGILNALG
                     LLLLGIEYAILLGVIGALLNLIPYLGGIVAVALYMMVALVTKSSAWFAVYVFGIHIFI
                     QLIDNNYIVPKIVASKVKINALFSIIVVLVGNALWGIPGMFLSIPLLAIVKVIFDHVE
                     SMKPWGFLFGDTMPPLIKLKKKPGVNNNQKE"
     gene            776..1825
                     /locus_tag="VI413_13600"
     CDS             776..1825
                     /locus_tag="VI413_13600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008648710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pesticidal protein Cry7Aa"
                     /protein_id="HEY6915705.1"
                     /translation="MIDVKKEGVLFTSTDLEFENEGVLNPAVIRVGDSVHIFYRAVQL
                     WNQSSIGYCRLDGPLTIVERWDKPIIVPEFDYESHGVEDARIVKIDDLYYLTYTGYDG
                     INARGALATSKDLIHFKKHGLIVPPITYSKFVFLAETNGNVNENYYHNHKFYYQESDP
                     DKKMMLWDKNCVFFPRRIDGNLVFLHRIRPGIQIVSVKEIADLTKEFWKEYFRNLHDN
                     IVLDPIFPHESSYMGSGCPPIETESGWVLIYHGVAQTEKGLVYSACAALLDLKDPSKE
                     LARLPYPLFFPEYDWELVGEVNNVVFPTGTALFGNTLFIYYGAADSLIATASLSLPAL
                     LTELLTYAKKYDYER"
     gene            1815..>2019
                     /locus_tag="VI413_13605"
     CDS             1815..>2019
                     /locus_tag="VI413_13605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915706.1"
                     /translation="MKDEINDPKSDKIISSQAIYGYDNTVFPRVTSRRIKLPEVENHY
                     PNLAEILVISSYPPRECGIATYSQ"
BASE COUNT          568 a          381 c          436 g          634 t
ORIGIN      
        1 ccttccatta tacatgcctg gatttctaaa acccagcacg aactggtcaa tatcgatggc
       61 acattagtgg ggcaaaccct ggtaagtgta ggaggcagtc tcgcaaccat atttataatt
      121 ccggtgtatg tttttgtcat actttattat caaccgctct taatggaatt tattcaccgg
      181 ctttttggta agacgcatct ggttcaggtt ggtgaaatta ttactcaaac gaaatctgtt
      241 atccagcgct atctggtcgg attgattttc gaagccatca ttgttgggat actcaatgcc
      301 ctcggacttt tgttgcttgg aattgaatac gccattttgt taggagttat cggcgcctta
      361 ctcaatctga tcccttattt aggcggaata gtggccgttg cattgtatat gatggtagcc
      421 ctggttacca aatcatcggc atggtttgcg gtttatgttt ttggtattca tatttttatt
      481 caactaattg ataataacta cattgtacct aaaattgttg catctaaagt aaaaataaat
      541 gccttgttct ccatcattgt agtactggta ggaaatgctt tgtggggaat accggggatg
      601 tttctgtcca ttccgctgtt ggctattgtc aaagtcattt ttgatcatgt tgaatcgatg
      661 aagccctggg gatttttatt tggcgacact atgccgccct taataaaact gaagaagaag
      721 cccggagtta ataataacca gaaagagtaa ttaagccgta aacaacgaaa atatcatgat
      781 agacgtaaaa aaagaaggag tattattcac cagtacggat ttggaatttg aaaacgaagg
      841 cgtattaaac ccggcagtca ttcgtgttgg cgacagtgtt catattttct atcgtgctgt
      901 tcagttatgg aatcaatcca gtattggcta ttgccggttg gatggccctt tgacaattgt
      961 ggagcgttgg gacaaaccga ttatcgttcc tgaattcgat tacgagtctc acggagtgga
     1021 agatgcccgc atcgtgaaaa ttgatgattt atattacctg acttataccg gatatgatgg
     1081 aatcaatgca cgtggtgctt tggcaacttc gaaagattta attcatttta aaaaacacgg
     1141 actgattgtt ccacccataa cctattcgaa gttcgtgttt ctggctgaaa caaatggtaa
     1201 tgtaaatgaa aattactacc acaatcataa gttttattac caggaatcgg acccggacaa
     1261 gaagatgatg ttatgggata agaattgtgt gtttttccct cggcggattg atggaaacct
     1321 ggtttttttg catagaatcc gacctgggat tcaaattgtt tcggtaaaag aaattgctga
     1381 tttgactaag gaattctgga aagagtattt tcggaacctg cacgacaata ttgttctcga
     1441 tccaatcttt ccgcacgagt caagttatat gggcagcggt tgtccaccca ttgaaacgga
     1501 atcgggttgg gtgcttattt accacggtgt ggcgcaaacc gaaaaagggc tcgtttactc
     1561 ggcctgtgct gctttactcg acctgaaaga cccttctaaa gagctggccc ggttacctta
     1621 tccattgttt ttcccagaat atgattggga actggttggc gaagtgaaca atgtggtttt
     1681 tccaaccggt actgcacttt ttggcaatac attatttatc tattatggtg ctgctgattc
     1741 acttattgca actgcttcgt tgagtttacc ggcattgctt acagaattat taacctatgc
     1801 aaaaaaatat gactatgaaa gatgaaataa atgaccccaa aagtgacaaa ataattagtt
     1861 ctcaggctat ttatggctac gataatactg tctttccccg tgttacttcc agaagaatta
     1921 agcttcctga agtagaaaac cattatccga acctggccga aatactggta ataagttcgt
     1981 atccacccag ggagtgtgga atagcaactt actcacaag
//
LOCUS       DATDNM010000814         2364 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1058757, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000814 DATDNM010000000
VERSION     DATDNM010000814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2364
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1058757"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..805
                     /locus_tag="VI413_13610"
     CDS             <1..805
                     /locus_tag="VI413_13610"
                     /inference="COORDINATES: protein motif:HMM:NF019311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PA14 domain-containing protein"
                     /protein_id="HEY6915707.1"
                     /translation="SFKNVMNSLNTDYVVVRPDHIFQLIRQANNLSVNPGGVEGTGEG
                     LTGTYYNGTNFETLVGTNNEATINFDWGTGSPMTGVNADGFSARWTGQVQPRYSGTYT
                     FYLTSDNNRRVWINNQLIIDKWITGQSTYSGTIALTGGQKYDIEIEYAENTGTANCKL
                     EWASPLQAREVIPQSQLYNAISSVDAAKTSEISISPNPIENGVFSIKTNATNQEVLDL
                     TLCDLYGKIVLREKVQESKQVDVAKIPAGTYIVSIRSKYNNYVKKVVVR"
     gene            complement(1030..2106)
                     /locus_tag="VI413_13615"
     CDS             complement(1030..2106)
                     /locus_tag="VI413_13615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6915708.1"
                     /translation="MKKSLIILIAMVTGIGLVSAASPKKQAPADRWSVQKVKTWYAAQ
                     PWPSGCNFQPSTAINQIEMWQNESFDAATIDKELGWAEGLGFTTMRVFLSSVVWKAEP
                     VVFKKNIEKFLTISASHKIRPMFVFFDDCWKPESAIGKQDEPKPGVHNSGWVRDPSVS
                     LRADTAKLFPALEKYVKDILVTFKNDKRILMWDLYNEPGNSGHGISSLPLLRNVFKWA
                     REVNPSQPVSSGIWYFGCPELNVFQIQNSDVITYHNYASTKEHEMWINLLKTHNRPMI
                     CTEYMARRNDSKFQNIMPLLKNNNVGAINWGFVSGKTNTIFAWDEPKPNEKEPALWFH
                     DIYRQDKTPFDQAEVDIIKKMNGK"
     gene            complement(2161..>2364)
                     /locus_tag="VI413_13620"
     CDS             complement(2161..>2364)
                     /locus_tag="VI413_13620"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915709.1"
                     /translation="RSLRIDGLDSNKQYDCTVYNMDGRVALTESLKSGNELNVSLLAA
                     SQYILLLKEAKTTEQITFSFTKQ"
BASE COUNT          668 a          497 c          521 g          678 t
ORIGIN      
        1 aagttttaaa aatgtgatga attcgcttaa cacggattat gttgtagtga gacccgatca
       61 tattttccaa ctgatacgcc aggccaataa tctttcggtt aatccgggag gagttgaagg
      121 tacaggcgag ggattgaccg gcacttatta taacggaacg aactttgaaa cgctggttgg
      181 cacaaacaat gaggcaacta ttaacttcga ttgggggaca ggctctccaa tgacaggtgt
      241 gaatgccgat ggcttttcgg caaggtggac aggccaggta caacccaggt attcgggtac
      301 ctacactttc tacctgacaa gtgataataa ccgcagagtc tggattaata atcaattaat
      361 aatcgacaag tggattactg gtcaaagcac ttattcagga acaatagctt taaccggagg
      421 gcaaaaatat gatatcgaaa tagagtatgc tgaaaatacc ggtacagcca attgcaaatt
      481 agaatgggca agtccacttc aggcacggga agtgattcct caaagccagt tatataatgc
      541 gatttcttca gtggatgcag caaagacttc tgagataagt atatcaccca atcctattga
      601 aaacggggtg tttagtataa aaacgaatgc caccaaccag gaagtactgg atctgacgct
      661 ttgcgatctt tatggaaaaa tagtgttgcg tgagaaagtc caggaatcaa aacaagtaga
      721 tgttgcaaaa attccggcag gaacttatat cgtctccatt cgttcaaaat acaataatta
      781 cgtcaagaag gttgtagtca gataaaaaag caagcaattt gcagacaatc cgtctgactg
      841 ctttgagcgg tcagacggat ttgtttttag aacgcaatca gtatcaataa ctgtgaagtg
      901 cgctaataaa tagaattgca gtattcagag tggatctagc gaaccaaccc tctttcctaa
      961 ataaacaaat cgtcccgaaa ttcaatttag aatttcggga cgatcaatat aaatgccagt
     1021 atcaaataat tattttccgt tcatcttttt gataatatcc acttcggcct gatcgaaagg
     1081 tgttttgtcc tgacgataga tatcgtggaa ccacaatgca ggttcttttt cgtttggctt
     1141 gggttcgtcc catgcaaaaa tggtattggt tttacctgac acaaaacccc agttgatggc
     1201 acccacgttg ttgtttttca acaatggcat aatgttctgg aacttgctgt cgttacgacg
     1261 cgccatgtat tcggtgcaaa tcatagggcg gttgtgcgtt ttcagcaggt taatccacat
     1321 ttcatgttct ttggtgctgg catagttgtg ataagtaatc acatcggagt tctgaatctg
     1381 gaacacattc agttccgggc agccaaaata ccagataccc gacgaaaccg gttgggacgg
     1441 attcacttcg cgcgcccatt taaatacgtt gcgaagcaaa ggcaaggaag aaatgccgtg
     1501 tccgctgttg cccggttcgt tgtacaaatc ccacatcagg atgcgtttgt cgtttttgaa
     1561 agtaaccaga atgtctttca cgtatttttc caacgccgga aagagtttag ccgtatcggc
     1621 acgcagcgaa acgctcgggt cgcgcaccca acctgagtta tgcacgcccg gttttggttc
     1681 atcctgcttg ccaatggccg attccggttt ccagcaatcg tcgaaaaaca caaacattgg
     1741 acgaattttg tggctggcag aaatggtgag gaatttttcg atattctttt tgaaaaccac
     1801 cggttcagct ttccaaacca ccgagctcag gaacacacgc atggttgtaa acccaagccc
     1861 ttcggcccag ccaagttctt tgtcgatagt ggcagcatca aagctttcgt tttgccacat
     1921 ttctatctgg ttgatagccg tgctgggctg aaaattacaa ccgcttggcc agggctgggc
     1981 ggcataccat gttttcactt tttgtactga ccaacggtca gcaggggctt gttttttagg
     2041 acttgctgct gaaaccaacc caatgccggt taccatagcg ataagaataa taagactttt
     2101 tttcattttg atattcattc tttagttgtt tttatgtgtt tttttcgaca gactttcctg
     2161 tcattgtttt gtaaagctaa atgttatttg ctcagtcgtt tttgcttcct ttagcagaag
     2221 tatatattgc gatgcagcca gcaatgacac attcagttca tttccacttt ttaaagattc
     2281 ggtcagagca acacgtccat ccatgttata gaccgtgcaa tcgtattgct tattgctatc
     2341 aagaccatca atccggagtg accg
//
LOCUS       DATDNM010000815         2294 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2020727, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000815 DATDNM010000000
VERSION     DATDNM010000815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2020727"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(378..830)
                     /gene="tnpA"
                     /locus_tag="VI413_13625"
     CDS             complement(378..830)
                     /gene="tnpA"
                     /locus_tag="VI413_13625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HEY6915710.1"
                     /translation="MAQSLVKNYIHIVFSTKHRHSFIDKAIENELFNYLGGVCINLEC
                     QPIIVGGHADHVHILCLLSRKITLAKLLEEVKSHSSKWIKTKGENYKNFYWQDGYGAF
                     SVNPKEVAVVIKYISNQREHHIKKTFQREFLQFLEEYKVEYDERYLWD"
     gene            complement(1000..2019)
                     /gene="recA"
                     /locus_tag="VI413_13630"
     CDS             complement(1000..2019)
                     /gene="recA"
                     /locus_tag="VI413_13630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEY6915711.1"
                     /translation="MAKTVEEIKFPVSDKLKALQLAMDKIEKDHGKGAIMRMGDNKVE
                     DIGFISTGSIGLNVALGIGGYPRGRVIEIYGPESSGKTTLAIHAIAEAQKAGGIAAII
                     DAEHAFDRAYAEKLGVNTDELLISQPDNGEQALEIADQLIRSSAVDIVVIDSVAALTP
                     KAELEGDMGDSKMGLQARLMSQALRKLTANINKTNTTCIFINQLREKIGVMFGNPETT
                     TGGNALKFYASIRLDIRRIGQLKDGEEAIGNQTRVKVVKNKVAPPFRKAEFDIMYGEG
                     ISKTGEILDLGVEYGIIKKSGSWFSYGDTKLAQGRDASKSVIKDNPELAAELEAKIVE
                     AIQNK"
BASE COUNT          629 a          466 c          447 g          752 t
ORIGIN      
        1 gtgtgccact tatgttttgc aagcattgca ttaaatccag catgggttgg tgtccgaaag
       61 aaggctacaa ggctactttc aaagaacctt tatttctccg aaataatgat gaggaatata
      121 agctgacttt tgactgtaaa gcgtgtgaaa tgaggatttc gagggcgtaa aaaatccaat
      181 gaaaacataa cgaaaacata gggttatcac cctacgctac aagatcacgc cacttcgtgg
      241 ctgtgaggaa tgaaatggaa gtattaagcc acgaagtggc gaattctgtc tgcgtcgggt
      301 gaagcccgac gacaaaagag aatgaggaat tttagccacg aagtggcgtg attggcgcgt
      361 ttcgcacgca gaagaaatta atcccacaga tagcgctcgt catattcaac cttatattct
      421 tccaaaaact gaagaaactc tcgttgaaag gttttcttta tatggtgttc ccgttgattt
      481 gaaatgtatt tgattacgac agcaacttct tttggattta cagaaaaagc accgtaacca
      541 tcctgccagt agaaattttt gtaattctca ccttttgttt ttatccactt ggatgaatgg
      601 gatttgactt cttccagcag ttttgctaag gtgatttttc tggaaagcag acaaagaata
      661 tgaacgtgat cggcatgtcc gccaactatt atgggttgac attcaagatt tatgcaaact
      721 ccacccagat agttgaatag ttcattttct atagctttat cgatgaaaga gtgtctgtgt
      781 tttgtactga atacgatatg tatgtagttt ttgactaatg attgagccat agttttagaa
      841 ggttacttga ttatgccact ttgtggctta ggtggctgct tttcagctca cagggttaca
      901 accggtgttc ggagaaacgc gacttctgac taaaaatgaa aaaatcctca tccgattaag
      961 tctttgaact taattagatg aggattttct taaaatcaat tatttattct gaatcgcttc
     1021 tacgatttta gcttccagtt cggctgctaa ttcaggatta tctttgataa ccgatttcga
     1081 agcatcgcgt ccctgagcca gtttagtgtc gccgtagcta aaccatgagc cgcttttctt
     1141 gataatgcca tactcaacgc ccaaatcaag gatttccccg gttttagaaa ttccttcgcc
     1201 gtacattatg tcgaattcag ctttgcggaa tggaggtgcc actttgtttt tcaccacttt
     1261 tacgcgggtt tggttaccaa tagcctcttc gccatctttc aactggccga tacgacgaat
     1321 gtccaaacgg atagaagcat aaaatttcaa tgcgttacca ccggttgtag tttcagggtt
     1381 accgaacatt acaccgattt tttcacgcaa ctggttgata aatatacaag ttgtgtttgt
     1441 cttgttgatg ttggcagtca gtttacgtaa tgcctgagac atcaagcgag cttgcaatcc
     1501 catttttgaa tcacccatgt cgccttccaa ctcagctttt ggagtcaaag ctgcaacaga
     1561 gtcaattact acgatatcaa ctgcggatga acgaatcaac tgatcggcaa tttccaatgc
     1621 ttgctcgcca ttgtcaggtt gcgaaatcaa caattcgtct gtatttacac ctaatttctc
     1681 cgcatacgca cggtcgaaag catgttcggc atcaattatg gctgcaatac caccggcttt
     1741 ctgagcttcg gcaattgcat ggattgccaa cgtagtttta cccgatgatt caggtccata
     1801 gatttctata acacgtccgc gtggataacc gcctatgccc aatgctacat ttaacccgat
     1861 tgagccggta gagataaatc cgatatcttc caccttattg tcacccatac gcatgatggc
     1921 gcctttaccg tggtcttttt caattttgtc cattgccagt tgcaatgctt tcagtttgtc
     1981 tgatacagga aattttatct cctcaactgt ttttgccata attttatttg ttctattttg
     2041 ttgttttgat atattatttt caatgttggg tatattcgtg atggcttgaa atagatttac
     2101 aaagataaaa ttaattcttt caaatttcaa tttagccgtc gttttttatg aacagttttc
     2161 taaacgatgc attaaccaac aaatatgaat tatttcagta cttccagttt tgcaaattta
     2221 agtagtaacg attttacgcc tttttcccca aaatcaatat ctgctttttc atttccattt
     2281 gaaatgctgg tttc
//
LOCUS       DATDNM010000816         5878 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1273532, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000816 DATDNM010000000
VERSION     DATDNM010000816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5878
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1273532"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            576..1124
                     /locus_tag="VI413_13635"
     CDS             576..1124
                     /locus_tag="VI413_13635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005682000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-70 factor"
                     /protein_id="HEY6915712.1"
                     /translation="MKNAADDILLLNLIREGDKLAFRYLFETYFTPLCRFMHVYISDK
                     AIIEELALDIFVYIWENRQTLQIELSFKAYLFQAGRNKCLNELRQKKKTIPLDQIDQD
                     IMDVEIMSLEEEELYQLIQEAIFALPEKCREVFNLSRNENLSNKEIAEKLDISVKTVE
                     AQITKSIKRIKDFLGNSYLYLF"
     gene            1199..2209
                     /locus_tag="VI413_13640"
     CDS             1199..2209
                     /locus_tag="VI413_13640"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEY6915713.1"
                     /translation="MKNRLPWDLIVSKLRKELSPEDELLFNEWLSTNDNGHLFEQLEF
                     VWRRVQQKVSVYEPDLEYYWKELSARIETSPVEKHEAKPTFLLRLTNRRFIRVAAAIT
                     MLLGTTFFIAYYAGKYNSGKSQEYITYSTLNAKSKVVLPDGTEVWLHNKSSLTYNFDK
                     DSEQREVNLTGEAYFSVKHDAERPFVVAANGVQIKVHGTQFNVNSYSSSKKVLVSLFE
                     GSVSMNANSKDVFLKPGEEGTFDVKSKEMTVSEGDVEFAKVWTSDKIRFENKNLREVC
                     RYLSKWYGIKIDIDPEIHNDQSYTFTFRGQSLDEVVGIMADIQSFNYKIDDEKNIVTI
                     KK"
     gene            2362..5685
                     /locus_tag="VI413_13645"
     CDS             2362..5685
                     /locus_tag="VI413_13645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008862621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6915714.1"
                     /translation="MNLKKIITLFLTFLLVVNISAQQKKESTLTIFLRDLPLSEAIKQ
                     IEDQSKCTFFYDASLIDVKQKASLNVKSVSLSDALTQLFAATNIRFEIKGSQIILYPK
                     KANQPSTKKTKKITGRVIDANSEPLIGVTLYVKGTKNGTITDINGNFSIQADNNDVIT
                     VSYVGYNPKEYAVSLLGEGSQIVLDESSQQMKEVMVVAYGTQKRASVVGAITTIEPAK
                     LNISTSRSLSNDLAGNIAGIIGVQRSGEPGYDNSEFWIRGISSFKGGQSPLVLVDGIE
                     RSLNDIDIAEIETFSVLKDASASAVYGVRGANGVILITTKKGYAGKTNINVSVERSMT
                     QPAQLPKFLNAPNYVTLLNNINIQDLGYALYSDDVVQKYRTGYDRERYPDVNWIDAIT
                     NNNASNTRASFDLSGGSEKLRYSFVGAYFNETGITTTDPSRDWTSAISVNRFNLRTNV
                     DMNITKTTLLTFNIGGYLQRRNAPSASIDNVFNIAFQAPPHIVPIHYDDGRIGRPKTS
                     ENPWALLTQTGFQRDAKSKMESLFAVEQNLKFICPGLKAKGIFSFDYYSNNSVKRSGN
                     PAYYDPAIDRNPETGELIFSSIPSDGQQFLNYEQWSSYGTNSTYLEANLSYDHTYEDH
                     YFNALVLYNQRDYDNGENVPYRNQGFAGRAAYTYKGKYIAEFNFGYNGSENFAPNKRF
                     GFFPSVAGGWIVSEEPFMSQARNTVNKLKLRGSYGLVGNDKLDGRRFAYITTIEDTGG
                     YIFGNSSLKLDRNGRREGYIGVPDLTWETVKKGNFGVELGLWKMIELQVDFFHERRED
                     IFMERKFYPNSAGIPILPWANFGVVTNQGVDVQFSLNKQINKDWFMSVQGSATYAKNK
                     IIEQDEDILVVGTHRSSTGKPVGQIFGLIADGVFTQDDFVDVSTGELKADIPKHKFSM
                     KVYPGDIKYRDLDNDHEITLKDMTAIGGTENPELVYGFGLNTSYKHFDFGFFFQGNGN
                     TYRMIGRGNNFLPGAALGATGNIYTNATDSWTEDNPRSDAFYPRLHMGYNANNAQAST
                     WWLKDMSLLRLKNIELGYSLSKRILANTPIEHGRIFVRGTNLFHLSNFKLWDPELSTD
                     NGLKYPIMSTYSMGLQLKF"
BASE COUNT         1971 a         1012 c         1164 g         1731 t
ORIGIN      
        1 ggtattatat gattaccacc gaaagggtaa cgacgggaat ttaatttttg tattctaaac
       61 ttgcaaaagc aagttccgga taagtaaagc ccctgtttca aattaatttg aaacaggggc
      121 ttttgctgtt atgtccaatc aattattcgg tcattttaaa ttattgatat gataatgcat
      181 tgttctgtgc ccgggattta gaattatcga actaaaatca gaatagatgc ctgctaccgt
      241 gaaaaaaatt ctacaaaaaa attatctaca caggctcaat tgctgattat tttacgatta
      301 ctttcggttg tatgtctaca ttttttcagt ttttgtatct atataactta ttgataatta
      361 ctattaactg atgactatcc gggcaggcgg gtctccattc tttttattac cggcttggct
      421 tcatcattat ccggttaatt ttgcaactgg cacgatgaat taaagatatg taaaatcaat
      481 tacgactttt catgttcaaa aaaaatgaat ccgccaattc tttatcgaaa tataaaattt
      541 aatctatccc tcttttttat aataaattat caaatgtgaa gaatgctgct gatgatatat
      601 tgctgttgaa tttaatccgt gagggtgata aattagcttt caggtatttg ttcgaaactt
      661 attttactcc cttatgccgt tttatgcatg tgtacatttc ggataaggca attattgaag
      721 aattggcact ggatatattt gtatacatct gggaaaaccg tcaaacactt cagatagaat
      781 tatcctttaa ggcatattta tttcaggcag gacgtaacaa gtgcctgaat gaactgcgac
      841 agaagaaaaa gacgatacca ttagatcaaa tagatcagga tataatggat gttgaaataa
      901 tgagcctgga agaagaggaa ttataccaac tgattcagga agcaattttt gctttgcctg
      961 agaaatgccg ggaagttttt aatcttagcc gaaatgaaaa tctgtccaat aaagaaattg
     1021 cagaaaaatt agatatttcg gtaaagacag tagaagccca gataaccaag tcaataaaaa
     1081 ggataaaaga ctttttagga aactcatatt tatatttatt ctagtttttt ttaaaccggt
     1141 gtaagggttg tttctacttt ttgtgtcata gaagtaaacc cttttaatag taacggttat
     1201 gaaaaacaga cttccgtggg atttaattgt atcaaaactc cgcaaagagc tttcaccaga
     1261 agacgaatta ttatttaatg agtggctgtc tacaaacgac aatggtcatt tatttgagca
     1321 acttgagttt gtttggaggc gtgttcagca gaaagtatct gtgtatgaac ctgatctgga
     1381 atactattgg aaagaactct ctgccagaat agaaaccagc cctgttgaga aacacgaagc
     1441 aaaaccaacc ttcctgttac gacttaccaa ccgacgtttt attcgtgtag ctgcagcaat
     1501 tacaatgttg ctgggaacca cattttttat agcatattat gccgggaaat ataattcggg
     1561 taaatcgcag gaatatatca catactccac gctaaatgca aaatcgaaag tggttttacc
     1621 cgatggaaca gaagtctggc tccacaacaa atcctcatta acttataatt tcgataaaga
     1681 ttccgaacaa cgggaagtaa accttaccgg cgaagcttat ttcagtgtaa aacatgacgc
     1741 tgaaagacca tttgtggtag cagctaacgg agttcaaata aaggttcatg gaacacaatt
     1801 caatgtgaac tcgtattcgt cgtcaaagaa agtattggtc agtttatttg aaggctcggt
     1861 gtcgatgaat gccaatagca aagatgtttt tctgaaacct ggtgaagaag ggacttttga
     1921 tgtgaaaagc aaagaaatga cagtatcaga aggcgatgtg gagtttgcta aagtatggac
     1981 cagcgacaaa attcgttttg aaaataaaaa tcttcgtgaa gtatgccggt atttgtcaaa
     2041 atggtatggt attaaaatag atattgatcc tgagatacat aatgatcaat cctacacatt
     2101 tacattcaga gggcaatcat tggatgaagt tgtaggcatt atggcagata ttcagtcatt
     2161 taattataaa atagatgatg agaaaaatat agtaacgata aaaaaataaa agcctatgaa
     2221 gtatatacat gtataaaaat gatcacaact aatgttcgga ttaattgcaa tctaactaaa
     2281 tatttagcaa ctcaaaaaat cattcagtaa taggaaaaat gaatgattca aatgtgttaa
     2341 ccttaaaatt tttattaaaa tatgaattta aaaaagatta ttactctttt tttgactttt
     2401 ttattggtgg tgaatatatc agcacaacaa aaaaaggaaa gtacactaac aattttttta
     2461 cgcgatttac cactttctga agcaattaag caaattgaag accagagcaa atgtacgttt
     2521 ttttatgatg catctcttat tgatgtaaaa caaaaagcaa gtctcaatgt aaagtcagta
     2581 tcattatcgg atgcacttac ccagttgttt gcagcaacca atatccgctt tgaaataaaa
     2641 ggatcgcaaa taatccttta tcctaaaaaa gcaaaccaac caagtacaaa aaaaactaag
     2701 aagataacag gaagagttat tgatgcgaat agtgagccac ttataggggt aactttgtat
     2761 gttaagggta ctaaaaatgg tacaattacc gatataaatg gaaatttctc gatacaggct
     2821 gataacaatg atgttataac agtttcgtac gtaggataca atccgaagga atatgccgta
     2881 tctcttttag gagaaggttc gcagattgta ctcgacgaat cttcacagca aatgaaggaa
     2941 gttatggttg tagcctatgg aactcagaaa agagcttctg tggttggagc aatcactact
     3001 attgagcctg ccaaacttaa tatctcaacc tcccgctcct taagtaatga tctggccggt
     3061 aacattgccg gtattatcgg agtacaacgg agtggcgagc caggttacga taactctgaa
     3121 ttctggattc ggggtataag ttcgttcaaa ggtggccaat cgcccctggt gcttgtcgat
     3181 ggaatagaac gctcgttgaa cgatattgat attgctgaaa tagaaacatt ttcggtactc
     3241 aaagatgctt cggccagtgc agtgtatggt gtacgcggag ctaacggagt aatcctgatt
     3301 accacaaaaa aaggatatgc tggaaaaaca aatatcaatg tttcggttga acgctccatg
     3361 actcaaccgg ctcaattacc taaatttttg aatgcgccca attacgttac actgctcaat
     3421 aacatcaata tccaggatct gggatatgca ctatactcag atgacgtagt tcagaaatac
     3481 aggactggtt acgaccgcga acggtatccg gatgtaaact ggatagatgc cattacaaat
     3541 aataatgcaa gcaatacacg tgcatcattt gatttaagcg gtgggtcgga gaaacttcgt
     3601 tattcatttg tgggtgctta tttcaacgaa accggaataa ccacaacaga tccttcgcgc
     3661 gactggactt cggcaatcag cgtaaaccgt ttcaatctcc gaacgaatgt tgatatgaac
     3721 ataaccaaaa caacattgct tactttcaac attggcggtt atttgcaacg tagaaacgca
     3781 ccatcggcaa gtattgacaa tgtattcaat atagcattcc aagctcctcc acatatagta
     3841 cccattcatt atgacgatgg gcggataggc cgtcctaaaa cgagcgaaaa tccatgggcg
     3901 ttattaaccc aaaccggttt tcagcgcgat gcaaaaagca agatggaatc tttatttgcg
     3961 gtagagcaga atttaaaatt catttgtccg ggccttaaag caaaaggaat tttctctttc
     4021 gactactatt caaacaacag tgtaaaaaga tcaggtaatc cggcctatta cgatccagcc
     4081 atagatcgga accccgaaac tggtgaattg attttttcaa gtataccatc ggatggacaa
     4141 caattcctga actacgaaca atggtcaagt tacggaacta acagtactta tctggaagcc
     4201 aatctttcgt acgaccatac atacgaagat cattacttca atgcattggt gctttacaat
     4261 cagcgtgatt atgataatgg agagaacgtt ccctatcgaa accaaggctt tgccggaaga
     4321 gcagcctata cgtacaaagg caaatatatt gcagaattta atttcggata taatggttct
     4381 gaaaattttg caccgaataa acgttttggt tttttccctt cagttgccgg agggtggatt
     4441 gtatctgaag agccttttat gtctcaagcc cgtaataccg tcaataaatt gaagttgcgt
     4501 ggatcatacg gtttagttgg aaatgataaa ctggacggtc gtcgctttgc atacataaca
     4561 accattgaag atactggtgg atacatattt ggaaactcat cattaaaact agatagaaat
     4621 ggacgcagag aaggatatat aggtgtgccg gatttgacgt gggaaacagt taaaaaagga
     4681 aactttggtg ttgagcttgg tttatggaaa atgatagaat tgcaggttga ctttttccac
     4741 gaacgtagag aagatatttt tatggaacgt aaattctatc caaattcagc cggaattcct
     4801 atactgccct gggccaactt tggagttgtt accaaccagg gagtagatgt tcaattttcc
     4861 ttgaataagc aaatcaacaa agactggttc atgtcggtac aagggagtgc aacttatgca
     4921 aaaaataaaa tcatagaaca ggatgaagat atattggtgg ttggaactca tcgttccagt
     4981 acaggaaaac ccgtaggtca aatttttggg ttgattgccg atggcgtttt tacgcaagac
     5041 gactttgttg atgttagcac gggtgaatta aaagcagaca ttccaaagca taagttcagt
     5101 atgaaagtat atccgggtga tattaagtat cgcgatttgg ataatgacca tgaaattaca
     5161 ctcaaagata tgactgcaat tggcggaaca gagaacccag aactcgttta tggatttgga
     5221 ctaaacactt cttacaagca ctttgatttt ggatttttct ttcagggtaa cggaaataca
     5281 taccgcatga ttggacgtgg taataacttc cttcctggag ctgcccttgg agctaccggt
     5341 aatatatata ccaatgctac cgattcatgg acggaggata atccgcgcag cgatgctttt
     5401 tatcccaggt tacatatggg ttacaatgcc aacaatgctc aggcatctac ctggtggttg
     5461 aaggatatga gcctccttcg tttgaaaaac atagaattag gttactctct ttctaaacgg
     5521 attttagcaa atacgccaat tgagcatgga aggatattcg ttagaggcac aaatttattt
     5581 catttatcca acttcaaatt atgggatcct gaattaagta ccgataatgg attaaaatac
     5641 cccatcatga gcacatattc aatgggatta cagttgaaat tttaagtaga ataataataa
     5701 caatatctca tgaaaaacaa catattaaaa tatacgacaa ttttatttat tgtaattttt
     5761 gccatccctt cctgtaactt tctggataat gcaccggatg gacaaattac gctggaaatg
     5821 gtatttaacg ataagaacag gaccgaggaa tggcttgctg caagttatag taaaattc
//
LOCUS       DATDNM010000817         2651 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1378452, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000817 DATDNM010000000
VERSION     DATDNM010000817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2651
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1378452"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            80..709
                     /locus_tag="VI413_13650"
     CDS             80..709
                     /locus_tag="VI413_13650"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEY6915715.1"
                     /translation="MFLTKAELKYKLSMPLPGVAAHLKMAPASRAHELISNNDNSLNA
                     RKSAVLILFFHDEDVLKMIVIRRSVYVGIHSGQIAFPGGRYEEEDKDLRTTALREIEE
                     EIGIPEDKIEILGRLSDIYVPPSNFMISVFVGYLAEKPEYKIDEREVDEVIEIPFSDF
                     FKPNLIKEKDFYVGSLRAAKKVPYFDVTNAEIWGASAMVVSELLEMLAC"
     gene            783..1745
                     /gene="rluF"
                     /locus_tag="VI413_13655"
     CDS             783..1745
                     /gene="rluF"
                     /locus_tag="VI413_13655"
                     /EC_number="5.4.99.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2604) synthase RluF"
                     /protein_id="HEY6915716.1"
                     /translation="MTEKIRLNKFISDSGTCSRREADKYIEQGHVFVNGHRAAVGTQV
                     SKHDKVTLNGNLIEAKEGTDFAFIAFNKPVGIISTTEIGVKDSIIDYIGYHERIFPIG
                     RLDKESQGLIFLTNNGDIVNKILRAGNKHEKEYLVTVDKPVTDEFIQKMGAGVPILGE
                     MTKKCKVVKESVFSFRIVLIQGLNRQIRRMCEYFDYEVVKLERIRIMNISLKGIPLGE
                     WRQLEPTEMEQIMAAIASSTSESKTPKASVKPVTQNAERQANKSAQRAPSSGTKKPDR
                     SSNPNPKSRDLRTQSSNSNGKKTGSAKHSKPSSASAGNRKFGKR"
     gene            complement(1853..>2651)
                     /locus_tag="VI413_13660"
     CDS             complement(1853..>2651)
                     /locus_tag="VI413_13660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006844261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915717.1"
                     /translation="QRNIELFAWDGEWYLRAYFDSGEPLGSASNEECRIDSLPQSWSV
                     ISGAGSPRRSAQAMEQVEKQLVRHNEKIIQLFTPPFDKSALNPGYIKGYVPGVRENGG
                     QYTHAAIWTAMAFATMGETDRSWDLFNLLNPIQHGKTEEQISIYKVEPYVVAADVYGC
                     APHTGRGGWTWYTGSCSWMYRLLVEMLLGVNRSGNKLILNPLLPKGWDSYKVHYRFGQ
                     TVYHITFNRLTDDSLPRLILDGAELSDKKMLPLDDDRNEHFVEMWVK"
BASE COUNT          800 a          552 c          578 g          721 t
ORIGIN      
        1 cgcagattga gctaattttg cagattgaac tgtctgcgta aatcagcgca atctgcggga
       61 aattctttaa tataaaatca tgtttctaac taaagcggaa ttaaagtaca aactctccat
      121 gcctttgccc ggtgtggctg cgcacctgaa aatggcgccg gcaagccgtg ctcatgaact
      181 tatcagcaac aatgataatt ctctgaatgc caggaaaagt gctgtgctta ttctcttttt
      241 tcatgatgaa gatgtgctga aaatgattgt tatccggcgg agtgtgtacg ttggaattca
      301 ttccggtcag atagcattcc cgggtgggcg atacgaggaa gaagataaag acttaagaac
      361 taccgctttg cgtgagattg aagaagagat tggcattccg gaagacaaaa tagaaatcct
      421 tgggagattg tcggatattt atgtaccgcc tagcaatttt atgattagcg tttttgtggg
      481 ttacctggcc gaaaaacctg aatataaaat agacgagcgc gaagtggacg aggtgataga
      541 aattccattc agcgactttt ttaaacccaa tcttataaaa gaaaaagatt tttacgttgg
      601 gtcattacga gcagctaaaa aagtacctta tttcgatgtt accaatgctg aaatatgggg
      661 cgcaagtgcc atggtagtta gcgaattgct tgaaatgtta gcatgttgac ttatatccaa
      721 tttatcgcca cattatcaca tcaccatatt atcacatttt caaactaact aattaaacaa
      781 ccatgaccga aaaaatccgt ctcaataaat ttatcagcga cagtggaact tgctcgcgtc
      841 gtgaagccga caaatatata gaacaaggtc atgtttttgt aaatgggcac agggctgcgg
      901 ttggaacgca ggtttcgaag catgataaag tgacactgaa tggtaacttg attgaggcca
      961 aagaaggaac tgattttgca tttatcgctt ttaataagcc tgttggcatt atcagtacca
     1021 ccgagattgg tgtaaaagat agcattattg actatattgg ttaccacgaa cgtattttcc
     1081 ctatcgggag acttgataaa gagtcgcaag gcttgatttt cctgaccaac aatggcgata
     1141 tagtcaataa aattctacgg gccggaaaca agcacgaaaa agagtatctg gttacggttg
     1201 ataagcctgt tacagatgaa tttatccaga aaatgggtgc aggtgttcct attttgggtg
     1261 agatgaccaa aaaatgcaaa gtagtcaaag aatcggtttt ctcgttccgc attgtgctga
     1321 ttcagggctt gaatcgtcag atacgccgga tgtgtgaata ttttgattat gaagtggtga
     1381 agttggaacg tatccgcatt atgaatatca gcctaaaagg cattccgctt ggtgagtgga
     1441 ggcagcttga acctaccgaa atggaacaga ttatggctgc aattgcaagt tcaacatcgg
     1501 aatcaaaaac tccgaaagca tctgttaagc cagtaacgca aaacgctgaa cggcaagcta
     1561 ataaatcggc ccaacgtgct ccatcttccg gaacaaaaaa gccggatcgt tcatccaatc
     1621 caaatccaaa atcgagggat ctccgaaccc agtccagtaa ctccaacggc aagaaaaccg
     1681 gttcggcaaa acattcaaaa ccttcttcgg caagtgcagg aaaccggaaa tttggaaaga
     1741 gataagtcaa ttcaaataaa aacccgttca ttttcaatgc gaaaatgaat gggtttttaa
     1801 tgtttctgat atccgattct cttgttcgga aatcatccag atatcgctgt atttatttta
     1861 cccacatttc tacaaaatgt tcattcctgt catcatctaa tggtagcatt tttttgtccg
     1921 aaagctcagc tccatcaagg ataagacggg gtaatgagtc gtcggtgaga cgattaaaag
     1981 tgatatgata cacggtctgt ccaaaacgat agtgtacttt gtagctatcc caacctttcg
     2041 gaaggagcgg atttaggatt aatttgtttc ccgatcggtt tactcccagg agcatttcaa
     2101 ccagaaggcg gtacatccac gaacaagaac cagtgtacca tgtccagcca ccacgccctg
     2161 tatgaggtgc acagccatac acatcggccg ccaccacata aggctcaact ttatatatgg
     2221 atatctgttc ttccgttttg ccgtgttgaa tagggtttag caagttgaaa agatcccagg
     2281 aacggtcggt ttctcccatg gtggcaaaag ccatagcagt ccatatggca gcatgcgtat
     2341 actggcctcc attctcacgt acaccgggaa catacccttt aatatagccg ggattaagtg
     2401 ctgacttatc aaatggtggg gtaaatagct gtattatctt ttcattgtgg cgcaccaact
     2461 gtttctcaac ttgctccata gcctgcgcag aacgtctcgg actaccggcc ccactaatta
     2521 cagaccagct ttgtggcaat gagtcgatac gacattcctc gttacttgca gatccaagtg
     2581 gctcgccgct atcaaaatat gcacgcagat accattcgcc atcccatgca aaaagctcaa
     2641 tattcctttg t
//
LOCUS       DATDNM010000818         2882 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1274128, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000818 DATDNM010000000
VERSION     DATDNM010000818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2882
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1274128"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..553)
                     /locus_tag="VI413_13665"
     CDS             complement(<1..553)
                     /locus_tag="VI413_13665"
                     /inference="COORDINATES: protein motif:HMM:NF039204.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5715 family protein"
                     /protein_id="HEY6915718.1"
                     /translation="MAVKNKKKAIGITICVLIGSCLAIYIGTPLFKHIKKETPQSKTY
                     AQCDHVHFPSAPIQPSDKLNDPNEIQLIHARTNGLKQPFATNDEFNERIGDLVRKSVL
                     VQVTENRFYQLKSLSHSQPYLIPEAIDMLNEIGYRFQKRLQEKKYNIYRFRVTSLLRT
                     EETQYNLSHRNRNATKSISCHLYG"
     gene            762..1667
                     /locus_tag="VI413_13670"
     CDS             762..1667
                     /locus_tag="VI413_13670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005792036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEY6915719.1"
                     /translation="MKPTLFVLAAGMGSRYGGLKQLDGLGPNGETIMDYSIYDAIKAG
                     FGKIVFVIRGSFEQDFKTVVINKFKDLIDTDIVFQEISNVPEGCTYTPEREKPWGTNH
                     AVLMGKDAIHEPFAVINADDFYGQESFAILADFLRSVEGKKNEYCMVGYRVGNTLSES
                     GAVSRGVCVVDENQLLQNVVERTHIEEKGGTINYLDENGEEVAIDATTPVSMNMWGFT
                     PDYFEYSEQYFKQFLAENGQKLKSEFYIPLAVNNLIVEGKATCKVLDTPSKWFGVTYV
                     EDRPQVVLKINELVRKGVYPEKLFK"
     gene            1683..2717
                     /gene="galE"
                     /locus_tag="VI413_13675"
     CDS             1683..2717
                     /gene="galE"
                     /locus_tag="VI413_13675"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEY6915720.1"
                     /translation="MAKILVTGGAGYIGSHTVVELQKVGFEVVIVDNLSNSNIDVLNG
                     IEKITGIRPAFENIDCVDYVSMDRMFEKYKDIEAIIHFAASKAVGESVEKPLLYYRNN
                     LVSLINLLQLMPIHKVKNIVFSSSCTVYGQPDVLPVTESAPIKAALSPYGNTKQIGEE
                     IIRDTIHANPCYQSIILRYFNPIGAHASAEIGELPLGVPNNLLPFVTQTAIGIRKQLS
                     VFGSDYNTPDGSCIRDYIHVVDLAKAHVIAVQRMLNEKTKSRVETFNLGTGRGLSVLE
                     IIETFERVNGVKIPYKIVDRREGDIEKVWADPAYANNELGWTATETVEETLRSAWAWE
                     QNLAKRVKSE"
BASE COUNT          847 a          469 c          647 g          919 t
ORIGIN      
        1 tgccgtataa gtggcatgaa atgctctttg ttgcatttct gtttctgtgg ctcaggttgt
       61 attgagtttc ttcggtacgc agcaatgatg ttactctgaa gcgatagatg ttgtattttt
      121 tttcctgcaa ccgtttttga aatctatagc caatttcgtt tagcatatca atggcttcgg
      181 ggatgaggta tggctgtgaa tgtgaaagtg atttgagttg ataaaacctg ttttcggtaa
      241 cttgtacaag cactgacttg cgaaccaagt cgccaattct ttcattaaac tcatcgttag
      301 tggcaaatgg ctgtttcaat ccgttggttc ttgcgtggat taactggatt tcgttggggt
      361 cgttcagttt gtcgctcggc tgaataggag cgcttggaaa atgaacgtgg tcgcattggg
      421 cgtaagtctt ggattgaggt gtttcctttt ttatgtgttt aaagaggggt gttcctatat
      481 atatggcaag gcagcttcca attaatacac aaatggtaat gccgattgct ttctttttgt
      541 tttttacagc catgtttgtt ctggtttatt tgcaaagata gaaatttagg ctgtggctcc
      601 caacatattt tttgttctaa ttttcaacaa ttgtcataaa aagattagct tcacattttt
      661 taaagtttta gttgggtaat agtttgtaaa atgcttcatt atttcttctg caattcaaaa
      721 ctattggcta actttgcgcc tctaaatcta aaaaaagtaa tatgaaacca actttatttg
      781 tattagcagc aggaatgggt agtcgttatg gcggtttgaa acagttagat ggactgggac
      841 ccaatggtga aactatcatg gattattcga tttatgacgc aattaaagcc ggattcggta
      901 aaattgtttt cgttatccgt ggaagtttcg agcaggattt taaaactgtt gtaataaaca
      961 aattcaaaga tttaattgat actgacatcg tttttcagga aatcagtaat gttcccgaag
     1021 gttgtactta tactccggaa cgcgaaaaac cttggggaac aaatcatgca gtgttgatgg
     1081 gcaaagacgc tattcatgag ccttttgcag tgattaatgc cgatgacttt tatggtcagg
     1141 aatcatttgc cattctggct gattttctac ggagtgttga aggcaaaaag aacgaatact
     1201 gcatggtggg gtatcgtgta ggtaatacct tgtcggaaag tggtgctgta agccgtggtg
     1261 tttgcgtggt tgatgaaaac caactgttgc aaaacgtggt agaacggact cacattgaag
     1321 aaaaaggcgg caccatcaat taccttgatg aaaatggtga ggaagttgcg attgatgcaa
     1381 ccacaccggt atctatgaac atgtggggtt ttactcctga ttattttgaa tattcagagc
     1441 agtatttcaa acaattcctt gccgaaaacg gacagaagct gaaatcggaa ttttatattc
     1501 cattggcagt aaataatctg atcgtagaag gtaaagctac atgtaaagtt cttgatacac
     1561 cttcgaaatg gtttggcgta acgtatgttg aagatcgtcc gcaggtagta ctaaaaatca
     1621 atgaattagt acgtaagggt gtatatcctg aaaagttatt taaataataa tcaaatagtt
     1681 gtatggcaaa aattttagta accggtggag cgggttatat tggttcgcac acggttgttg
     1741 aattgcaaaa ggtaggtttt gaagttgtga ttgttgataa tctctcaaat tcaaatatcg
     1801 atgttctgaa tggcatcgaa aaaattaccg gcattcgacc cgctttcgaa aacattgatt
     1861 gtgtggatta tgtgagcatg gatcgcatgt tcgaaaaata caaagatata gaagcaatta
     1921 ttcattttgc tgcaagcaaa gcggtaggtg agtcggttga gaaacctctg ttgtattatc
     1981 ggaacaatct ggtgtctctg attaatttgt tgcaattaat gccaattcac aaggtgaaaa
     2041 acattgtgtt ctcttcgtca tgtactgtgt acggacagcc tgatgtattg ccggtaacag
     2101 aaagtgcgcc aattaaagca gccctgtcgc cttacggaaa cacaaaacaa atcggagaag
     2161 agataatccg tgatactatt cacgcaaatc catgttacca aagcattatt ctgcgttatt
     2221 ttaatccaat cggagcacac gcttcggctg agattggcga attgccactc ggggttccaa
     2281 ataacctgtt gccttttgta acccagactg ccattggtat ccgcaaacag ctttcggttt
     2341 ttggcagcga ttataatacg cctgatggct catgtatccg cgattatata cacgtagttg
     2401 atttagctaa agcgcacgta attgcggttc aacgtatgtt gaacgaaaag acaaaatcac
     2461 gtgttgaaac atttaatcta ggaaccggac gcggtttgtc tgttttggaa attattgaaa
     2521 cattcgaacg ggtgaatgga gtaaagattc catataaaat agttgatcgt cgggaaggtg
     2581 atattgaaaa agtgtgggct gatcctgctt atgctaataa tgaacttggt tggactgcaa
     2641 cggaaacagt tgaagaaacg ctgcgcagtg cgtgggcctg ggagcaaaat ctggctaagc
     2701 gtgtgaaatc agaatagttc tccaataaaa ataatttaag aatgaacaat taataatttt
     2761 atcgctcaga tatttattaa ttgttcattt tttttactcc gctcattgtg acggagtctt
     2821 taattactaa caataaactt aaaagagatg aataaaacat tatatccatt gaaattcagt
     2881 cc
//
LOCUS       DATDNM010000819         3817 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2021456, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000819 DATDNM010000000
VERSION     DATDNM010000819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3817
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2021456"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..795
                     /locus_tag="VI413_13680"
     CDS             <1..795
                     /locus_tag="VI413_13680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915721.1"
                     /translation="MKINFKYTFGLVLLLSTAVAQAQENQQLPSHKEKPVLIDDTHPE
                     SLKLAKQKHDREAQNLVMNNGKFILGVSSMLSSVGTGSGIGLIGFTSSTQKSDAVGYT
                     EQNPVKTTNINLLPKFGYFVVDNLAVGLDISLIYQSRSLKVINNESNSKGTYFCVGPF
                     VRYYIPAGKILPYLEITGGYGAENSWSRDTYSSYSYIRTSSSGLFSVGGGAGIAIPIG
                     DKVTFDALLGYNSLTVYDPVNNTDNQRTVTGTFGLKLGFSVLLGSK"
     gene            complement(895..1914)
                     /gene="pheS"
                     /locus_tag="VI413_13685"
     CDS             complement(895..1914)
                     /gene="pheS"
                     /locus_tag="VI413_13685"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002561121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEY6915722.1"
                     /translation="MKNRIKQLLEEVSQLAAANQDELEALRIKYLSKKGQISELFNDF
                     RNVANEEKREVGQLLNELKNVAQDKINELKDAFGNSATDDNKTDLTRSADPIKLGTRH
                     PLSLVKHEIIDIFSRIGFTIAEGPEIEDDWHVFGALNFPPEHPARDMQDTFFIEQNPD
                     VLLRTHTSSVQSRVMAQQKPPIRMLFPGRVYRNEAISYRAHCFFHQVEGLYIDKDVSF
                     ADLKQALMYFAKEMFGENTDIRLRPSYFPFTEPSAEMDISCNICGGKGCPFCKHTGWV
                     EILGCGMVDPNVLENCGIDSKVYSGYAFGMGVERITNLKYQVKDLRMFSENDVRFLQQ
                     FESAY"
     gene            2218..2892
                     /locus_tag="VI413_13690"
     CDS             2218..2892
                     /locus_tag="VI413_13690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009137161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2461 domain-containing protein"
                     /protein_id="HEY6915723.1"
                     /translation="MNIQNILQFLEELKINNNREWFAENKARYDGLKADFEKLSKDLI
                     LEISHFDEDIKHVEVKDCVFRIYRDTRFSHDKTPYKTHFGVFIASAGGRKSQRGGYYL
                     HLDPDGCFVAAGVWCPQPDLLKALRQSVYDNIDEMNEIRQNPEFSRYFNDFYEEDKLK
                     TVPRGFPKDFPDAELLKLKHYMVEYKFDNKMLESDNFVQQVAQIVKCAYPLNRFLNYT
                     VDEVSA"
     gene            2927..3373
                     /locus_tag="VI413_13695"
     CDS             2927..3373
                     /locus_tag="VI413_13695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006843379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HEY6915724.1"
                     /translation="MILDSLENSGLYESVHPRFKQAFDFLRNTDLVALPLGKMELDGK
                     NLFVNVVDAAGKTPEVAKMETHNKYIDIQVPVTAPETMGWIAGSKLKDITEAYNEDKD
                     VSFFADKASNFIVVQPFEFAVFFPQDGHQPQIFEGTEKKLIVKVLV"
     gene            3516..>3817
                     /locus_tag="VI413_13700"
     CDS             3516..>3817
                     /locus_tag="VI413_13700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan-branching enzyme"
                     /protein_id="HEY6915725.1"
                     /translation="MKDLAIIKSDPWLAPFAGAINGRYEYFESVEKKLTGDGQTLSGF
                     ATGYMFFGLHQLSDGWVFREWAPNATAIFMIGDFNNWQRHPDYQLKKMQNGIWEIR"
BASE COUNT         1107 a          711 c          830 g         1169 t
ORIGIN      
        1 atgaaaataa attttaaata tactttcggg cttgtacttt tactaagtac tgcagtggca
       61 caggcgcagg aaaaccagca gcttccttct cacaaagaga aaccggtttt gatagatgat
      121 acgcatcccg aaagtttgaa actggcaaaa cagaagcatg acagggaggc acaaaattta
      181 gtaatgaata atggtaaatt tatcctggga gtttcgtcaa tgcttagttc tgtcgggaca
      241 ggctccggta ttggcttaat tggatttaca agttctactc aaaagagcga tgccgttggt
      301 tacaccgagc aaaatcctgt gaaaacgacc aacattaatt tattgcccaa atttggatat
      361 tttgttgtgg acaatctggc agttggtctg gatatttctt tgatttatca gagtcgctca
      421 ttgaaagtaa ttaacaatga atctaattct aagggtactt atttttgtgt cggaccattt
      481 gtgagatatt atattcctgc cgggaaaata ttaccatatc ttgaaattac gggaggttac
      541 ggtgcagaga atagttggtc tcgtgatact tactcttcat attcctatat caggaccagc
      601 tcttctggtt tgttctctgt gggaggaggt gcaggtattg caattccaat cggggataag
      661 gtgacatttg atgcgctgct cggttacaat tccctgacag tatatgatcc cgtaaacaat
      721 acagataatc agagaactgt tacgggaaca ttcgggttga agctgggatt ttcagtgttg
      781 ttaggctcaa aataatggct tgcagtggtt tgaaaagcct gctggcgtga ttaaataaaa
      841 aacgagcttg ttgcatttcg cacaagctcg tttttgttat gggattctat tgatttaata
      901 tgccgattca aattgctgca ggaaccggac atcattttcg gagaacatgc gcaaatcttt
      961 tacctggtat ttcaggttgg taatacgctc aacccccatg ccaaaggcat aaccggagta
     1021 aactttcgag tcgatgccgc agttttccaa tacgttaggg tctaccatgc cgcatccgag
     1081 gatttccacc cagccggtat gtttacagaa cgggcaacct tttccaccgc agatattaca
     1141 tgaaatatcc atttcggcac ttggttcggt gaatgggaag taagacggac gcaaacggat
     1201 atcggtgttt tcgccgaaca tttctttggc aaaatacatc agggcttgtt tcaggtcggc
     1261 aaacgacaca tctttgtcga tatacaaccc ttctacctga tggaaaaagc agtgtgcacg
     1321 gtaagagatg gcttcgttgc gatatacacg cccggggaac aacatgcgga taggcggctt
     1381 ttgctgtgcc attacgcgtg attgcaccga cgaggtatgg gtgcgaagca atacatccgg
     1441 attctgttcg ataaagaaag tatcctgcat gtcgcgggca gggtgttccg gtggaaaatt
     1501 caatgcacca aatacgtgcc agtcgtcttc aatttcaggg ccttcggcaa tggtaaatcc
     1561 aatgcgggag aaaatatcta tgatttcgtg tttaaccagc gaaagcggat gacgggttcc
     1621 cagtttaatc gggtctgcgc tgcgggttaa atcagtttta ttgtcgtctg tagcagaatt
     1681 gccgaacgca tctttcaatt cgtttatttt atcctgtgca acgtttttca gttcgttaag
     1741 caattgaccg acttcacgtt tctcttcgtt ggcaacattt ctaaagtcgt tgaagagttc
     1801 tgaaatctgt ccttttttac tcaaatattt gatacgaagt gcttccagtt catcctggtt
     1861 agcagcagcc agttggctca cctcttccag taattgttta atccgatttt tcattttttt
     1921 ttgtcttaac gttctcgctg ttggttgtaa tttgcctgtt ttacaattga ttgtgtattc
     1981 attaacagga ctttgcgatt ttctaacagc atgcaaaagt aatcattttt ccacaaaaaa
     2041 ttagttgtgt ttaaaaaaaa aggcctgtaa tcctgatttt gtctgaattt tgccttatat
     2101 ttgtcaaacg ctaaattatt tcacgtatga aacgagcatg aataggggta ttcaccaaat
     2161 ggtatgaaaa actgacatgc ggattccata cgacctttaa aaatcaatta ttatcgcatg
     2221 aacatccaga atatacttca attcctggaa gaattgaaaa tcaacaataa tcgagaatgg
     2281 tttgccgaaa ataaggcccg gtacgatggg cttaaggcgg attttgagaa actaagcaaa
     2341 gatctgatcc ttgaaatatc tcactttgac gaagatatta agcatgtgga agttaaggat
     2401 tgtgttttcc gtatttaccg tgacacccgt ttttcgcatg ataaaacacc ttataaaacc
     2461 catttcggtg tgtttatagc ttcagcaggc ggacgaaaaa gccagcgtgg cggttattat
     2521 ctgcatctcg atcctgatgg ctgttttgtt gctgctggtg tctggtgccc tcaacctgac
     2581 ttgttgaagg ctttgcgcca aagcgtttac gataacatcg acgaaatgaa tgaaatccgc
     2641 cagaatcctg aattctcacg ttatttcaat gatttctacg aggaagacaa actcaaaacc
     2701 gttccgcgag gtttcccaaa agattttccg gatgccgagt tgttgaaact gaaacattat
     2761 atggttgagt acaaatttga taacaaaatg ctggagagtg ataattttgt tcaacaggtt
     2821 gctcagattg taaaatgtgc ttatccattg aatcgctttt tgaactacac ggtcgatgaa
     2881 gtttccgcat aacgcattgg ttgtaaataa ttaaattcca aataaaatga ttttagattc
     2941 tttagaaaat tcaggattgt atgaatcagt ccacccgcgc tttaaacaag cattcgattt
     3001 tttgcgtaac actgatttag tggcactccc attgggaaaa atggagttag atggtaagaa
     3061 tttattcgtg aacgtggttg atgcagcagg aaaaactcct gaagttgcca aaatggaaac
     3121 gcataacaaa tatatcgaca tacaggttcc tgtaactgcg cctgaaacaa tgggttggat
     3181 agccggaagt aaattgaaag atattacaga agcatataac gaagataaag acgtaagttt
     3241 ctttgctgat aaagcttcaa atttcatcgt tgttcaacca ttcgaatttg ccgttttctt
     3301 cccgcaagac ggtcaccaac ctcaaatttt tgagggtacg gaaaagaaac ttattgtcaa
     3361 agtattggtt tagtttttcg aaaaattacc ttcgaacaaa ttccagaaaa ttcgcaggtt
     3421 caacttgatt acatgaaacg accatgaatg atcagccaaa taaagaggtt gaaaatttat
     3481 tcgggttttg tgtagcaata aaacaattat ttacgatgaa agaccttgct attattaaat
     3541 ctgatccgtg gttggcacct tttgccggtg caataaacgg gcgttatgaa tattttgaaa
     3601 gtgttgagaa gaagctgacg ggtgacggac aaacattatc cggttttgca acgggttaca
     3661 tgttttttgg tttgcaccag ctttccgatg gttgggtttt tcgggaatgg gctcctaatg
     3721 ctactgccat atttatgatt ggcgatttca ataactggca aagacacccg gattatcaac
     3781 tgaaaaaaat gcaaaatggc atttgggaaa ttcgttt
//
LOCUS       DATDNM010000820         3595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1592951, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000820 DATDNM010000000
VERSION     DATDNM010000820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3595
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1592951"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..700)
                     /locus_tag="VI413_13705"
     CDS             complement(<1..700)
                     /locus_tag="VI413_13705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011202620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HEY6915726.1"
                     /translation="MFGLLDCNNFYASCERVFNPSLNGKPVVVLSNNDGCVIARSAEA
                     KALGIPMAEPAYKLKELIEKNQIHVFSSNYVLYGDMSQRVMNTIASFVPDMEIYSIDE
                     AFLLFDGFENIDLKTYGEKIVRTTTRNTGIPVSLGIAPTKTLAKAANRFAKKYPDYKG
                     VCVIDTEEKREKALKLMNIGDVWGIGRQYAKKLEYYSVKTAWDFTQRTKSWVRHTMGV
                     VGERTWLELRGTPCI"
     gene            complement(789..1277)
                     /gene="umuD"
                     /locus_tag="VI413_13710"
     CDS             complement(789..1277)
                     /gene="umuD"
                     /locus_tag="VI413_13710"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HEY6915727.1"
                     /translation="MVKVKNIATAGNIDFYSANTNSELALPLVDGGIAAGFPSPAQDY
                     IDLKIDLNKELIANPSSTFYGRVKGTSMQDAGILDGDILVIDKSLEPQDGDTAVCFLD
                     GEFTLKYIKIEVDAVYLIPANSKFQPIKVTEENNFCIWGVVTYSIKSHKKNPRALKGN
                     SK"
     gene            1578..2117
                     /gene="hpt"
                     /locus_tag="VI413_13715"
     CDS             1578..2117
                     /gene="hpt"
                     /locus_tag="VI413_13715"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006166 - purine ribonucleoside salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HEY6915728.1"
                     /translation="MDTIQIKDKKFRLSIPESEIQAAVRNVAEQINHDIAEKNPVFIC
                     VLNGAFMFAGDLMKNVNMPCEITFVKLSSYDGLYTSGVVKEIIGLNESVVGRNVVVVE
                     DIVDTGITMERILSSLRAKGANEIRVATFLQKPDALQRDIKIDYVAMKIPNDFIVGYG
                     LDYDGYGRNLKDIYTVVEE"
     gene            2192..2767
                     /locus_tag="VI413_13720"
     CDS             2192..2767
                     /locus_tag="VI413_13720"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005839600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEY6915729.1"
                     /translation="MLNIIICGAPGCGKGTQSDLIVEKYKLQHLSTGDLLRKEIAGKT
                     ELGIIAESYISKGNLVPDEMIISILSKNIEAFGNNIKGIILDGFPRTVAQAEALEEMM
                     RKNGKEINVLVDLSVEKQELIDRLLKRGETSGRSDDNLETITKRLEVYETQTAPVSSF
                     YKNLNKYADINGMGTIDEIFGRIASVLDSKL"
     gene            2850..>3595
                     /gene="obgE"
                     /locus_tag="VI413_13725"
     CDS             2850..>3595
                     /gene="obgE"
                     /locus_tag="VI413_13725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008780185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEY6915730.1"
                     /translation="MASSNFVDYVKIFCRSGKGGPGSKHLYRDKLTMKGGPDGGDGGR
                     GGHIILRGSKNHWTLIHLKYARHVHAGDGDGGSQSRSFGKEGEDKVIEVPCGTVVYDA
                     ETGEFLCDITHDGEEVVLVKGGRGGQGNWHFRTATNQTPRFAQPGEPSIEKTVILQLK
                     VLADVGLVGFPNAGKSTLLSVVSAAKPEIANYPFTTLVPNLGIVAYRDSRSFVMADIP
                     GIIEGASEGRGLGLRFLRHIERNSILLFMIP"
BASE COUNT         1145 a          753 c          708 g          989 t
ORIGIN      
        1 caatacaagg cgtaccccgt aattcaagcc aggtccgctc acccacaaca cccatggtat
       61 gccgcaccca actcttggtg cgctgtgtaa aatcccatgc cgttttcaca ctgtaatact
      121 ccaacttctt tgcatattgc cggccaattc cccaaacatc gccgatattc atgagtttca
      181 atgctttttc gcgcttttcc tctgtatcaa taacacaaac acctttatag tccgggtatt
      241 tttttgcaaa ccgatttgcc gctttcgcca gtgttttcgt gggagcaata cccaaactca
      301 ccggaattcc cgtgttgcgc gttgttgtac gtacaatttt ttctccataa gttttcagat
      361 caatattttc aaatccgtcg aacaacaaaa aagcttcatc gatggaatat atttccatat
      421 caggcacaaa ggaagcaatg gtattcatta cccgttgcga catatcgccg tacaacacgt
      481 aatttgacga aaaaacatgg atctggttct tttcaatcag ttcctttagt ttatatgcag
      541 gctctgccat cggaatcccc aacgccttag cctctgccga acgcgcaata acacaaccat
      601 cgttgttgga aagtacaaca acaggcttgc cgttgagcga tggattaaaa acccgttcgc
      661 atgaagcata aaaattattg caatcaagta atccaaacat cataaaaaaa acctaaacac
      721 ctaagggaaa ataaagtaac tatcgtcaat aatataattt ttactcatat atataaatat
      781 cataagcttt atttagaatt tccctttagg gcccggggat tcttcttatg gctcttgata
      841 gaataagtaa caacccccca aatacaaaag ttattctctt cagttacttt gatcggctgg
      901 aatttactgt tagccggaat cagataaacg gcatctacct caatcttaat atacttcaat
      961 gtaaattcac catccaggaa acaaacagcc gtgtcaccat cttgtggttc caggcttttg
     1021 tcaattacca gaatatcacc atccagaatg ccggcatcct gcatcgaagt ccccttcacc
     1081 cgaccataaa aggtacttga aggattagca atcaattcct tgttcaagtc aattttcagg
     1141 tcaatataat cctgggcagg actggggaaa cccgcagcaa tacctccgtc aaccaatggt
     1201 aaagccagtt cggagttggt gtttgctgaa taaaagtcaa tgtttccggc agtagctata
     1261 tttttaactt tgaccatata ggtaaatgat aatttgaata atctttcaga cacaaagtaa
     1321 cacattttct ttcataaaat tccggcaaac acaaatcgca aaatcctaaa aattcaggtt
     1381 tacactcaaa accgacttat ttttaggcct ttaattccat ttccagataa tcctcttttc
     1441 gtatttcgga aatggatgtt tttttgtact tttgcaaaac ttttaccgaa attgccgaaa
     1501 tgttattaaa agattcatat tcggctattt aattcagaac aaacgacaac aaaatcactc
     1561 aaaacttcat attacacatg gataccattc agattaaaga taagaaattc cgtttatcta
     1621 tacccgaatc cgaaattcaa gctgcggttc ggaacgtagc cgaacaaatt aaccatgaca
     1681 ttgcagaaaa aaatccagtc tttatctgtg ttctgaacgg tgcatttatg tttgccggcg
     1741 acttgatgaa gaatgtgaac atgccatgcg aaattacatt cgtcaaatta tcatcatacg
     1801 atggacttta cacatcaggc gtggtgaaag aaattatagg gttaaacgaa agcgtggttg
     1861 gccgtaacgt ggtagtagtt gaagatattg tagacaccgg cattaccatg gaacgtatcc
     1921 tgagctcgct tcgtgcaaaa ggcgctaacg aaatacgggt agctactttc ctgcaaaaac
     1981 cagatgctct acagcgcgat attaaaatag attacgtggc catgaaaatc ccgaacgact
     2041 ttattgttgg ttacggattg gattacgatg gatatggacg taatttaaag gacatctata
     2101 ctgtcgttga ggaataagaa aaatccatga aacgaattga ataggtaaca aaatcgtttc
     2161 attttaatta atacataaaa ggtaaagaag aatgttgaac attattattt gtggcgcccc
     2221 tggttgtgga aaaggcaccc aaagtgattt gattgttgaa aagtacaagt tgcagcacct
     2281 gtcgacaggt gatttactcc gcaaagaaat tgcaggaaaa accgaattgg gaatcattgc
     2341 cgaaagctat atctccaaag gaaatttagt tccggacgaa atgattatca gcattttatc
     2401 aaaaaatatt gaggcttttg gaaacaacat caaagggatc atcctggatg gctttccacg
     2461 cacagtagcc caggcagagg cattagaaga aatgatgcgc aaaaatggta aagaaatcaa
     2521 cgttttggtt gacctgagcg ttgaaaaaca agagttgata gatcgcctgc taaaacgtgg
     2581 cgaaacttcg ggtcgcagcg atgacaacct ggaaaccatt acaaaacgcc tggaagttta
     2641 tgaaactcaa accgctccgg taagcagttt ctacaaaaat ctgaacaaat atgctgacat
     2701 taacggaatg ggaaccatag acgaaatctt tggccgcatt gcaagcgtac ttgattctaa
     2761 gttataattt attgatttct aaaacattca aaacacaccg gaaacttatt caggtgtgtt
     2821 ttgttatctc ataaaactaa aacaacacaa tggcaagttc aaactttgta gattacgtaa
     2881 agatattttg tcgttcgggc aaaggtggac ctggttcaaa acatttatac cgcgacaaac
     2941 tgaccatgaa aggtggtccg gatggtggcg atggtggacg tggaggccat atcattttac
     3001 gcgggagcaa aaatcactgg acattaatcc atctcaaata tgcacgccac gttcatgccg
     3061 gcgatggtga tggtggaagc caaagtcgta gttttggaaa agaaggcgaa gacaaagtaa
     3121 tagaagttcc ttgcggcaca gtagtttatg atgccgaaac aggagaattt ctttgcgaca
     3181 tcacccacga tggtgaagaa gtggtattgg taaaaggtgg acgcggagga cagggaaact
     3241 ggcatttccg caccgcaaca aaccaaactc cacgctttgc acaaccggga gaaccgtcca
     3301 ttgagaaaac agttattctc caactcaaag tgcttgccga tgtaggactg gttggatttc
     3361 caaatgcagg aaaatcaacc ctgctctcag ttgtttcagc tgcaaaaccc gaaattgcca
     3421 actatccgtt tacaacgctg gttccaaacc ttggaattgt ggcttatcgc gacagtcggt
     3481 cgtttgtaat ggccgatata ccgggaatta ttgaaggtgc atccgaaggt cgtggtctcg
     3541 gattaaggtt tttacgtcat attgagcgaa attccatttt gctgtttatg attcc
//
LOCUS       DATDNM010000821         2038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_845817, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000821 DATDNM010000000
VERSION     DATDNM010000821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_845817"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..378
                     /locus_tag="VI413_13730"
     CDS             <1..378
                     /locus_tag="VI413_13730"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEY6915731.1"
                     /translation="WGYSKLHEAIRQQAMDEMLHAEWLIERIIFLDAVPIVSKLNPIK
                     IGKTVLEMINNDNADELNSVRAYNEAIVLGRQVEDEGSVELLTKILKMEEDHMEWAEM
                     QLAQIEQMGIENYLVNQTEEDAR"
     gene            486..1157
                     /locus_tag="VI413_13735"
     CDS             486..1157
                     /locus_tag="VI413_13735"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915732.1"
                     /translation="MKNYPVNITSIRHITHDVLQIVTEKPIQYKFTPGQATEIAINKE
                     GWREQTRPFTFTCLPGDDYLEFTIKTYPARKGVTNELLKLKTADELILHEVFGAISYK
                     GEGVFIAGGAGVTPFISIFKYLQSKNKIGNNKLIFANKTKADIILEKEFNSLLDKNFI
                     NILSDEKVEGFAYGQITEDFLKAYVNDSTGHVYLCGPPPMMDAVLKQLSALGVDENII
                     IVEEV"
     gene            1197..>2038
                     /locus_tag="VI413_13740"
     CDS             1197..>2038
                     /locus_tag="VI413_13740"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6915733.1"
                     /translation="MRYFGKNIKLIVNSLMISYTDAGPDDAPVIIFIHGFPLNKSMWN
                     KQIEALMENYRVIAYDIRGHGDSEMESEQFSIDLFVNDLLSFMDVLKIDKASLCGLSM
                     GGYIALKAIKRNPLRFESLVLADTTCIADQPETIVKRKNAIKSIKEEGVVQYAEESVK
                     SLFAPESLTRKLVEIAAVKEMIISTQDESICQTLHALCVREETCDFLSSIKMPVLVLV
                     GEYDKITPPIAAAFIHKNIAGSKMFIIDHAGHLSNLENPDNFNERLNAFFATVYLKPE
                     IVDP"
BASE COUNT          677 a          343 c          423 g          595 t
ORIGIN      
        1 tgggggtatt caaaactaca tgaggcaata agacagcagg caatggatga aatgcttcat
       61 gctgagtggc ttattgaacg aattatcttt ttggatgcag tacctattgt ttcaaaactt
      121 aatccgataa aaattggtaa aacagtttta gaaatgatta ataatgataa tgcagacgaa
      181 cttaattcag ttcgtgccta taacgaagcc atagtacttg gtcgtcaggt tgaagatgaa
      241 ggttctgttg aactgcttac caaaatactc aaaatggaag aagatcatat ggaatgggca
      301 gaaatgcaac ttgcgcagat tgagcaaatg ggcatcgaaa attacctggt taaccagact
      361 gaagaggatg cccgttgaag ttccgaaaga aattagaata caattttaag ctgatgagag
      421 tatattaaaa atggttacat atttatatgc tgtggtgatg acattaacct attaaaataa
      481 ctgtcatgaa aaattatcct gtaaatatta catcaatcag gcatatcact cacgatgtgc
      541 tgcaaattgt tactgaaaaa cctattcagt acaaattcac tccggggcaa gccaccgaaa
      601 ttgcaattaa caaagaaggc tggagggaac agacgagacc tttcaccttc acttgcctgc
      661 ccggagatga ttatctcgaa tttacgatta aaacatatcc tgcaaggaaa ggtgtaacca
      721 acgaactgct aaaattaaaa acagctgatg agttgatttt gcacgaagtg tttggagcta
      781 tttcgtataa aggcgaaggc gtgtttattg caggtggcgc cggtgtaacg ccctttattt
      841 ccatcttcaa gtatcttcag tcaaaaaaca agattggcaa taacaaactc atatttgcca
      901 ataagacaaa agcggatatt attctggaaa aagaattcaa cagtttactg gataagaatt
      961 ttatcaatat tttatctgac gaaaaagttg aaggatttgc ctatggacaa attacagaag
     1021 actttctgaa agcatatgtc aatgactcta cagggcatgt atatctgtgt gggcctccac
     1081 ccatgatgga cgctgtgctg aaacaattat ctgctttggg tgtagatgaa aatataatca
     1141 ttgtagaaga agtttaaaat tcaggatttt actcaattat tcaaaacgaa gactatatgc
     1201 gctattttgg aaaaaacatc aagctaattg taaatagttt aatgataagc tacacggatg
     1261 ccggtccgga tgatgcgccg gttattattt tcattcatgg ttttccactc aataaatcca
     1321 tgtggaataa acagattgaa gctttaatgg aaaattaccg tgtgattgca tacgatattc
     1381 gcggacatgg cgattctgaa atggaaagtg aacaattctc catcgatctt tttgtaaatg
     1441 atttgcttag ttttatggat gtactgaaga ttgacaaggc ttccctttgt ggcttgtcga
     1501 tgggcggtta catagctttg aaagccatta agcgaaatcc cttgcgtttc gaatcgctgg
     1561 tattagccga cacaacctgc attgccgacc agcccgaaac tattgtaaaa cgaaaaaatg
     1621 ctattaaaag cattaaggaa gaaggtgtgg ttcagtatgc cgaagagagt gtgaagagtc
     1681 tttttgcacc ggagtcattg acacgtaaat tagtcgaaat tgcggctgta aaagaaatga
     1741 taatatctac acaggatgag tctatttgcc agactttaca tgcattatgt gttcgtgaag
     1801 aaacatgcga ctttctctcg tctataaaaa tgccggtgct tgttttggtt ggtgagtatg
     1861 acaaaattac accacctatc gcagctgcgt ttatacataa aaacattgct ggttccaaga
     1921 tgtttattat agaccatgcc ggtcatttaa gcaatttgga aaatcctgat aactttaatg
     1981 aacgattaaa cgcttttttt gcaacggttt atctaaaacc ggaaatagta gatccgga
//
LOCUS       DATDNM010000822         2643 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2127859, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000822 DATDNM010000000
VERSION     DATDNM010000822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2643
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2127859"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..429
                     /locus_tag="VI413_13745"
     CDS             <1..429
                     /locus_tag="VI413_13745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005789131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEY6915734.1"
                     /translation="EIAPNIGLADAIFDIVSSGSTLVTNHLKEVEVLMKSEALLIANP
                     SLSAEKQTVLDELLFRIESVQMAEGKKYVLMNVPTENIDKIIEVLPGMKSPTIMPLAK
                     EGWNSLHVVIEEKRFWDIIGKLKALGAEGILVIPIEKMIL"
     gene            480..1208
                     /locus_tag="VI413_13750"
     CDS             480..1208
                     /locus_tag="VI413_13750"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEY6915735.1"
                     /translation="MNLCIDQGNSSIKIGVFDQDKLIESTTFEKFGSVEISELFEKFS
                     IDACILSSVIIENDEQIAELKQKCPELIILSHLTPVPIENRYKTPETLGKDRLAAVVG
                     ASYLKPGSDILVVDAGTAITYDFIDANRVYWGGNIAPGLNLRLRALHEFTQKLPLVEA
                     QEESPELGTDTQSAIISGALHGIVYEIDGYIDHLKIKYPKLSAFLTGGSTFYFDTKLK
                     NAIFAERNLVLIGLNRILQYNVQK"
     gene            1195..2460
                     /locus_tag="VI413_13755"
     CDS             1195..2460
                     /locus_tag="VI413_13755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915736.1"
                     /translation="MYKNKAFLLALGSLLLVQFAIGQNNTNSPYTRFGYGDISETNSG
                     EQRAMGGVALGARSNYNINTVNPASYSSVDSMTFMFDLGTSALMSRFSTNSGSTSTFN
                     GNLEYITMQFPLAKNLGFSAGLLPYSFVGYNYYKTDTHLTGLDLDNFDTISYRTTFNG
                     NGGFSQVYAGLSANLFNHISLGVNAYYMYGAINNNRSIRLVSTSDSTIQYNIIRANNF
                     RIRYGVQLYNTFAKKHDVTLGLIYEQKAKLNGTFTQSTYGVLNDTTVAGTGDTDFELP
                     TMYGAGLYYTYDKRISVGLDYTLQEWGNAKFRGNYELNNRSKIALGVEYLPNPRGRKF
                     AERIRYRGGLNLSDPYYKVNNVTPPKNMGVSLGLGLPLYNNVTNTVTMLNASFEYGKL
                     GSSDLLREDYFKFTLNVAFNEHWFFKRKL"
BASE COUNT          821 a          423 c          547 g          852 t
ORIGIN      
        1 gaaattgctc cgaatatcgg gcttgccgat gctatttttg atattgtaag ctctggtagc
       61 actttggtta caaatcattt gaaagaagtg gaagtcttaa tgaagtctga ggctttgtta
      121 atagcaaacc cttcattgtc tgccgaaaaa caaaccgtac ttgatgagct tcttttcaga
      181 attgagtcgg ttcaaatggc tgagggtaag aaatatgtgc taatgaacgt tccaacagaa
      241 aatattgata aaatcattga agtattaccc ggaatgaaaa gtccaactat tatgcctctg
      301 gctaaagaag gctggaattc gttgcatgta gttatcgaag aaaaaagatt ttgggatatt
      361 ataggaaagc ttaaagcatt gggagctgaa ggtattttgg taattccgat tgagaaaatg
      421 attctttaat agtctgacga acgggctgat tgtgagcact catttaaaaa ttattattca
      481 tgaatttgtg cattgatcag ggaaattcaa gtataaaaat aggcgttttc gatcaggata
      541 agttgattga atctacgacg tttgagaaat tcggttctgt tgaaatttca gaattatttg
      601 aaaaattttc tatagatgcg tgtattttat cgagtgtaat tattgaaaat gatgagcaga
      661 tagctgaatt gaagcaaaaa tgtccggaat taattatatt atctcatctt acacccgttc
      721 caatagaaaa ccggtataaa acaccggaaa ctttgggtaa agacagactg gcagctgttg
      781 ttggagcttc atatctgaaa ccaggcagcg acatattagt tgttgatgcc ggtactgcta
      841 ttacttacga ttttattgat gccaatcgag tctattgggg tggcaatatt gcaccgggct
      901 tgaatttaag gttaagggct cttcatgaat ttacccaaaa actacctctg gtcgaagctc
      961 aggaagaaag tcctgagctg ggaacagata cacagtctgc aataatttcg ggtgctttgc
     1021 atggtattgt ttatgaaata gatggttaca ttgatcattt aaaaattaaa tatccaaaac
     1081 tttcagcttt tttaacagga ggtagcactt tttactttga tacaaagcta aaaaatgcca
     1141 tctttgcaga aagaaattta gtgttaatcg gtctcaaccg tattcttcaa tacaatgtac
     1201 aaaaataaag catttcttct cgctctcggt tcactccttc tcgtacaatt tgctatcgga
     1261 cagaataata caaattcacc ttatacccgt ttcggatacg gagatataag tgaaacaaat
     1321 tcaggtgaac aacgggctat gggtggagtt gctttgggtg cacgctctaa ctacaatatc
     1381 aatactgtga acccggcttc gtacagcagt gtggatagta tgacatttat gtttgatttg
     1441 ggaacttctg cgcttatgtc ccgtttttct acaaattccg gaagcaccag tacttttaac
     1501 gggaatcttg aatatattac catgcaattt ccattggcaa aaaatctggg atttagtgcc
     1561 gggttattgc catactcttt tgtggggtat aattactaca aaacagatac acatttaaca
     1621 ggattggatc tggataattt tgatacaatt tcttacagaa cgacctttaa tggtaatggc
     1681 ggtttcagcc aggtttatgc aggtttgtca gccaacttat ttaatcacat atcattaggt
     1741 gtaaatgcat attatatgta tggagccatc aataataatc gcagcattcg cttagttagc
     1801 acctcggatt ctactattca gtacaatatt attcgcgcaa ataattttcg tatccgatac
     1861 ggtgttcagt tatataatac ttttgcaaag aagcatgatg tgacattggg tttgatttat
     1921 gaacagaaag caaaattaaa cggtactttt acccagtcga catatggtgt tttgaatgat
     1981 acaacagtgg ccggaacggg tgatacagac tttgaattgc caacaatgta tggggctggt
     2041 ttatactata cttatgacaa gcgtatatcg gttggtttgg attatactct tcaggaatgg
     2101 ggaaatgcta aattcagagg gaattatgaa ctgaacaatc gttcaaagat tgcgttaggt
     2161 gttgaatatc tcccaaatcc aagaggacgt aaatttgccg aaagaattcg gtatcgtggt
     2221 ggtttgaatt taagtgatcc gtattacaag gtaaataatg ttactcctcc taaaaatatg
     2281 ggtgtttcat taggtcttgg attgccgctt tataacaacg taaccaatac agttacaatg
     2341 ttgaatgctt cattcgagta tggcaagtta ggttcttcag atttgttgcg cgaagattat
     2401 tttaaattca ctcttaatgt tgcatttaac gaacattggt tctttaaacg taaattgtaa
     2461 taagaaattc gtaactaaca gccggaaatc ttgagttcaa ataaatatat atctgtctgc
     2521 aaaacaattg ttggtggttt gtttctgctt ttctgtatag catcatgtaa taaggatgat
     2581 aagccggaaa agattgctgc aattgttgat cggtctgcaa tggccaggct tcatgcaact
     2641 gat
//
LOCUS       DATDNM010000823         4128 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_845860, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000823 DATDNM010000000
VERSION     DATDNM010000823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4128
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_845860"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..666
                     /locus_tag="VI413_13760"
     CDS             <1..666
                     /locus_tag="VI413_13760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEY6915737.1"
                     /translation="STDNGLFRNYKNEKATIPAFLDDYSFTIRAFISLYQVTFDEKWL
                     VESLLLTEYAITHFNDPISGMFYYTSDTEPALIARKMEISDNVIPSSNSEMAKNLFIL
                     GHYLYKDDYIDMARKMQENVRHHAQNGGIYYANWDILLCWLAREPHEVAILGKKSEAK
                     RKEFEMHYLPDVFLSGGETEGNLPSLKGKLIEGETTIYVCRDNTCQRPVNEVNEAIKQ
                     ICK"
     gene            complement(729..3230)
                     /locus_tag="VI413_13765"
     CDS             complement(729..3230)
                     /locus_tag="VI413_13765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEY6915738.1"
                     /translation="MTVNYSEQLHSVLLYSSQEAERLGNNYVGPEHLLLGILRNGIGK
                     AIDILNITHVNILKIKQTIESQIRTDLEPTGAEIPTLKSTERIKKIMELETRSMSVEI
                     ADTEHLLLAILKEKNNMAGDILIAEHLTYDQVKALIEEPKRMSSNFQDEDDDEDDPRH
                     KKKPNASSGSKQSDTPALDTFGTDITKAAQENRLDPIVGRNKEIERLAQILSRRKKNN
                     PVLIGDPGVGKSAIVEGLALRIIQRRVSRVLFDKRVVSLDMASIVAGTKYRGQFEERI
                     KAILNELSKNPDVILFIDEIHTIVGAGGAPGSLDAANMLKPALARGEIQCVGATTLDE
                     YRQSIEKDGALERRFQKVMVDPTTADETLQILENIQDRYEYHHNVRYTPEAIKACVRL
                     TDRYITDRCFPDKAIDALDEAGSRVHIGTVSVPVEIEELEKKIEDLKKDKLKVLSEQK
                     YELAGPIRDQEKQLQYQLEDAVKRWEDEAQLHPETVDEEQVAEVVAMMSGIPVQRIAQ
                     AEGLKLRQMKDALQGKVIGQDEAVNKIVKAIQRNRIGLKDPSKPIGSFIFIGPTGVGK
                     THLAKILAEFMFDSSDALIRVDMSEYMEKFSVSRLIGAPPGYVGYEEGGQLTEKVRRK
                     PYSIILLDEIEKAHPDVFNILLQVMDEGRLTDSLGRRIDFKNTIIIMTSNVGTRQLKD
                     FGKGVGFNTPSEIAMDSEFSRGVIQKALNRTFAPEFLNRVDDVVMFDQLSKDSIKAII
                     DLELKGIFGRVTALGYKLELTPETKDFIADKGYDVQFGARPLKRAIQKYLEDELADVV
                     LAGELEVGDTILMELNDETKEIKAKIVKPTIVLNN"
     gene            3593..>4128
                     /locus_tag="VI413_13770"
     CDS             3593..>4128
                     /locus_tag="VI413_13770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6915739.1"
                     /translation="MTEKISSSLRESKSARWTVLILVSFTMMCMYYLTDAMAPLQQNL
                     QSNLHWSATDYGLFTSGYGWFNVFLLMLVFSGMILDKLGTRFTGILAIFVMLVGAGIK
                     YWAISGHFKGSFELSIGSWQALGTTPTSALMAGLGFGIFGVGCEMFGIAANKAVVRWF
                     RGKEMALAIGLNTSTGRIG"
BASE COUNT         1174 a          848 c          748 g         1358 t
ORIGIN      
        1 tccactgata atggattatt ccgtaattat aaaaatgaga aagctacaat tcccgccttc
       61 cttgatgatt attcattcac tattcgtgca ttcatttctt tgtatcaggt tacttttgat
      121 gaaaaatggc tggttgaatc tctcctgcta acagaatatg ccattactca ttttaatgac
      181 ccaatcagtg gaatgttcta ctatacttcc gataccgagc ccgcgcttat tgcccgaaaa
      241 atggagattt cggataatgt gattccatct tcaaattcgg aaatggctaa aaatctgttt
      301 attcttggcc attatttata taaagatgat tatattgata tggctcgaaa aatgcaggaa
      361 aatgtaaggc atcatgctca aaatggaggt atttattatg ctaactggga tattttattg
      421 tgttggttag ctcgtgaacc tcatgaagtt gccatattag ggaaaaaatc ggaagctaag
      481 cgtaaagaat ttgaaatgca ttatttaccg gatgtatttt tgtccggtgg agaaacggag
      541 ggaaatctac cttcactcaa aggtaaatta attgaaggag aaaccaccat ttatgtttgc
      601 cgggataata catgccagcg cccggtgaac gaagtaaatg aggctattaa acagatatgc
      661 aaataaacaa ttacaaaaaa tccctgctac atctaagtgt agcagggatt ttttttagct
      721 tcaagccatt aattattcaa cacaatggtt ggtttcacta ttttggcttt aatttcttta
      781 gtttcgtcat tcaattccat tagaatagta tcacccactt ccagttcacc ggctaaaacc
      841 acatctgcca actcatcttc caaatatttt tgtatggcac gtttcaatgg acgagcacca
      901 aactgaacat cataaccttt atcggcaata aagtctttcg tttcaggtgt aagttccagt
      961 ttataaccca gtgcagtaac acgtccgaaa atacctttaa gttcgagatc aataatagct
     1021 ttaatagaat ctttgctcaa ttggtcaaac attaccacat cgtccacacg gttaaggaac
     1081 tccggtgcaa aagtgcggtt caatgctttt tgaattactc cacgtgagaa ttcagaatcc
     1141 atggctattt cagaaggggt attaaatcct actcctttgc caaagtcttt caattgacgt
     1201 gttcccacgt tggaagtcat gataataatg gtatttttaa aatcgattct acggcctaaa
     1261 ctatctgtca accggccttc atccattacc tgcaacagga tattgaatac atccggatga
     1321 gctttttcaa tttcgtcaag caaaataata gaataaggtt tacgacgtac tttctcggtc
     1381 aattgcccgc cttcttcgta cccaacatat cccggaggtg ctccaataag tctagaaaca
     1441 ctgaattttt ccatgtattc actcatatcc acacgaatca atgcatcgga actgtcgaac
     1501 ataaactcag ccaaaatttt agcaaggtgt gttttaccga cacccgttgg tccaataaat
     1561 ataaacgaac caattggttt gcttggatct ttaagcccga ttctgtttcg ttgaatagct
     1621 tttacaattt tatttactgc ttcatcctgg ccgataactt tgccttgcaa tgcatctttc
     1681 atctgacgaa gtttcaatcc ttctgcttgt gctattcgct gaaccggaat acctgacatc
     1741 atagccacta cttcagcaac ttgttcttca tcaaccgttt cggggtgcaa ttgcgcttcg
     1801 tcttcccaac gttttacagc atcttcaagt tgatattgca attgtttttc ctgatcgcgg
     1861 ataggtccgg ctaattcata tttttgttct gaaagaactt tcagtttgtc tttctttaaa
     1921 tcttcaattt tcttttcaag ttcctctatt tctacaggca ccgaaacagt accaatatga
     1981 acacgtgaac cggcctcatc caaagcatct atagctttat ctgggaaaca acggtcagtt
     2041 atataacggt cggtcaggcg cacacaagcc ttaatagctt ccggcgtata ccgtacattg
     2101 tggtgatatt catagcgatc ctgaatattt tccaaaatct gcaatgtttc atcagccgta
     2161 gttggatcaa ccataacttt ttggaaacga cgttccaatg caccatcttt ttcaatgctc
     2221 tgacggtatt cgtcaagcgt ggttgctcca acgcattgaa tttcaccacg cgccaaagct
     2281 ggcttcagca tattagcagc atccagcgaa cccggagccc cacctgcacc aacaatagtg
     2341 tgaatttcgt cgataaacag aattacatcc ggatttttag acaattcatt caaaatagct
     2401 ttaatccgtt cttcaaactg tccgcggtat tttgttccgg ccacaattga ggccatatca
     2461 agcgaaacta cccgtttatc gaacaacaca cgcgatacac ggcgttgaat aattcgtaac
     2521 gcaagtccct caacaatagc cgatttacca actcccggat caccaataag caccggatta
     2581 tttttcttcc ggcgactcag aatttgagcc agcctttcaa tttccttgtt tctacccaca
     2641 atcggatcca atcgattttc ctgtgcagct ttggttatat cagttccgaa agtatctaaa
     2701 gcaggagtat cactttgttt tgaacccgac gaagcattag gtttcttttt gtgacgggga
     2761 tcgtcttcat catcatcttc gtcctgaaag tttgaactca tacgtttagg ttcttcaatg
     2821 agtgccttta cctgatcgta ggtcaaatgt tctgcaatca gaatatcacc tgccatgtta
     2881 tttttttctt tcaaaatagc taacaataaa tgttctgtat cagctatttc tacagacatt
     2941 gaacgggttt ctagttccat aatttttttt atgcgttcgg tgcttttcag agttggaatt
     3001 tctgcaccgg taggctcaag atcagtacgt atctggcttt cgatagtttg ttttattttt
     3061 aaaatattta catgagtaat atttaatata tcgatggctt tcccaattcc attacgcaaa
     3121 atccccagca acaagtgctc tggccccaca taattatttc ccagccgttc agcttcttga
     3181 gagctataaa gcagcacact gtgcaattgt tccgaatagt tgactgtcat atattgtttc
     3241 tcctcttttt ttatgtgaca aatataataa ataaatgaac aaggaataat taaaaattaa
     3301 taattaattt tcgttgtttc tttttttttt ctttgaacag gaataaccat atgccacctg
     3361 tattctactt gtcttgtcaa aaatgatacc gaaaaaggaa tgtgtatttt tattcggtaa
     3421 ttttgtcagt ttaaaaacaa gaaatgattt ttttgagtag atttgcagcc ttaattgatt
     3481 tttgcgcaaa acaattaaga gtattggtta gagaatgatt gcatccatca gacaggaaaa
     3541 tcattttctt ccttttttat aatagaaaac aaataattta agcaaatagt ttatgacaga
     3601 aaaaatttct tcttcgcttc gagagtcaaa atcggctcgt tggacggtac tcatactggt
     3661 atcgtttact atgatgtgta tgtattatct gacggatgcc atggcgccct tacaacaaaa
     3721 tctgcaaagc aatttacatt ggtcggcaac cgattatggg ttatttacaa gtggttacgg
     3781 ctggtttaac gttttcttgc tgatgcttgt tttcagcgga atgattctcg acaagttagg
     3841 cacccgcttt accggaattc tggcaatttt tgtcatgctg gtaggtgccg gaattaaata
     3901 ttgggctatt tccgggcatt ttaaaggatc atttgaactt tccataggtt catggcaagc
     3961 tttgggaacc actcctacat cagctttaat ggcagggctc ggctttggta tatttggagt
     4021 gggttgcgaa atgtttggta ttgctgctaa taaggcagtt gttcgttggt tcagaggaaa
     4081 agaaatggcg ttggcaatcg gattaaatac ttctaccgga cgtattgg
//
LOCUS       DATDNM010000824         2122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1700466, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000824 DATDNM010000000
VERSION     DATDNM010000824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1700466"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..519)
                     /locus_tag="VI413_13775"
     CDS             complement(<1..519)
                     /locus_tag="VI413_13775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915740.1"
                     /translation="MNASQIHSTFKLALQSLASGKLKNAFEKTKLLVDELQIGEFSDR
                     LHDLEQNYQYLLHYYISGVDDPQRKTVYNKLIAKIFILNSELREELLLRNSSNYEYSQ
                     KRYFPFSKRYTSASELLVSLKYFHSQSALIMNLGDAHEVELKRLRSNYETALSELFSV
                     IWLTGTYHADEKT"
     gene            complement(589..1290)
                     /locus_tag="VI413_13780"
     CDS             complement(589..1290)
                     /locus_tag="VI413_13780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007212829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY6915741.1"
                     /translation="MAKKHASELKPLEEILTVWDVLTPDERQFISNNYTVHHFKKNEM
                     IHCEGEVPTHMMILASGKVKVYKEGVGSRSQIIRMLKPGEHFGYRAIIANETYNTNVT
                     AFETSTVYMIKADIFLSVLKHNNAFCYRFLEEMATDLGASDARTVNLTQKHIRGRLAE
                     ALLLLRKNYGLEEDGATISIYLSREDLANLSNMTTSNAIRTLSNFVNEHVIAMDGRKL
                     KIIDEERLRKISKMG"
     gene            1542..>2122
                     /locus_tag="VI413_13785"
     CDS             1542..>2122
                     /locus_tag="VI413_13785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007758324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4105 domain-containing protein"
                     /protein_id="HEY6915742.1"
                     /translation="MKKIILFFCIFLCIININAQQISISDSAVISLITCSPGEEVYSK
                     FGHTAIRINDSSKGLDLVFNYGIFSFETANFYLKFIKGETDYQLGVYETAYFLPEYKQ
                     RNSSVWEQILNLTVPEKRNLINLLITNYQPENRIYRYNFIFDNCATRPRDKIMEALQG
                     YVKFQPNNDSKTFRQWVGVYVGTDTWLKFGIDVV"
BASE COUNT          682 a          375 c          361 g          704 t
ORIGIN      
        1 agttttttca tctgcgtgat aagtgcctgt caaccaaata acactaaaaa gctctgataa
       61 tgctgtttcg taatttgagc gcaatcgttt taattcaact tcatgagcat cgcccaaatt
      121 cataatgagc gctgattgcg aatgaaaata cttcaacgaa actagcaatt cggaagcaga
      181 agtgtaacgt ttggaaaaag ggaaatatcg tttttgggaa tattcgtaat tggatgaatt
      241 gcgtagcagc aactcttccc tgagttcaga attcaggata aatatctttg caataagctt
      301 attataaacc gtttttcgtt ggggatcatc aacgcctgat atataataat gaagtaagta
      361 ttgataattc tgctccaaat catgcagccg atctgaaaat tcgccaatct gaagctcgtc
      421 aaccaataat ttggtttttt caaatgcatt tttcaatttt cccgaagcga gagattgcaa
      481 tgccagttta aatgttgaat gaatttgaga tgcattcatt ttttctagta tgtctgtaaa
      541 cggttatagg tacactgttt aaattttcag gcttcaatct agagttcttt atcccatttt
      601 actaatctta cgaagtcttt cctcatcaat aattttgagc ttacgaccat ccatagctat
      661 aacgtgttca tttacaaaat tggacagtgt tcgaatagca ttggaagtag tcatatttga
      721 taaattggct aaatcttcac gcgatagata aatactaatt gtggcaccat cctcttccaa
      781 accgtaattt ttacgcaaca agagtaaggc ttcagctaat cgaccacgaa tatgtttttg
      841 agtcagatta accgtacggg catcagatgc tcccaaatcc gttgccattt cttcgagaaa
      901 acgataacag aaagcattgt tgtgttttaa aactgacaaa aaaatgtcag ctttaatcat
      961 gtaaaccgtc gatgtttcga aagcagttac gtttgtattg tatgtttcgt tggcaataat
     1021 ggcgcgatat ccaaaatgtt cacccggttt tagcatacga attatctgcg aacggcttcc
     1081 aacaccttct ttataaactt ttactttccc gctggccaat atcatcatgt gcgtggggac
     1141 ttcaccctca cagtgaatca tttcattttt tttaaaatga tgaaccgtgt aattattact
     1201 tataaactgt cgttcatccg gagtaagtac atcccaaacc gttaaaatct cttccagggg
     1261 tttaagttcc gaagcgtgtt tttttgccat aagattctta gagaaatatg tttgacaaca
     1321 atgttataaa gcacaaattt agtaattttt tgagatattg aatcaaatgt ttggaaaaaa
     1381 catcaaatta agcgttaaaa atggaattct tgtatataca aatttgcttt aaacaattaa
     1441 aatcggtcta aaatagattt ttgttaagta tcacaatatc aatttgacaa tatttaaaat
     1501 atatttgtta tctttgtttt acacattaac ccggattatt tatgaagaaa attatacttt
     1561 ttttctgtat ctttctctgt attataaata taaatgcaca acaaatttcc attagcgact
     1621 cagctgtaat aagtctaatt acttgttcac ccggcgaaga agtttattca aaattcggac
     1681 atacggccat acgcattaat gattcatcta aggggctgga cctcgtgttc aactatggaa
     1741 ttttcagttt tgaaactgcc aacttttatc tcaaatttat aaaaggagaa accgactatc
     1801 agttaggagt ttacgaaaca gcatattttt taccggaata taagcagcga aattcttctg
     1861 tgtgggagca aattctcaat ctgactgtac ctgaaaagag aaatttaatc aacctcttga
     1921 ttacaaatta ccaaccggag aaccgaattt acagatacaa ttttattttt gacaattgtg
     1981 ccactcgtcc gcgcgataaa attatggaag cattgcaagg ctatgtaaag tttcagccaa
     2041 ataacgactc aaaaactttc cgccaatggg ttggtgttta tgtaggaacg gatacatggc
     2101 ttaaatttgg aattgacgta gt
//
LOCUS       DATDNM010000825         3572 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1060147, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000825 DATDNM010000000
VERSION     DATDNM010000825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3572
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1060147"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..908)
                     /locus_tag="VI413_13790"
     CDS             complement(117..908)
                     /locus_tag="VI413_13790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915743.1"
                     /translation="MRTKHFILILSAIIVVFSSCVIREPEDKEVLTKSGWSMFRGIER
                     DVVDQVQLFDKMLFVDTYVNTPDSLKRHYLFENFGQYSLTVRGADYVFKLDNDTSYVI
                     TTDSKSIHSPGAEWVARGNNWTYYMTIQNISKNKWRLNIHQLMSYYSVYPVKENLEIE
                     CTDTVAPKRFRDSDFSVSGDAIWIDISRYDCDATLNCTITSPLKYVRKNRFFSEGEIA
                     IEAVDSVQDKRVETVARYMNDGSGKVKITFQGMTSIYTNYQWLVY"
     gene            complement(910..1563)
                     /locus_tag="VI413_13795"
     CDS             complement(910..1563)
                     /locus_tag="VI413_13795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915744.1"
                     /translation="MKKKIILFLLLGIAVFAGAQQFYPMPGQRFIPEHNFRFGVGAKP
                     FEAADIKFFDYSDFIEESYFESENYYSGARYTTNSWFVEYIYQANSWFGVGATANYLA
                     YYNNYYDGVTDRCIGQNMRQHLSLYPTIRITWLRSGKLTTYSSFGIGQRLIFERDNLR
                     DVFDKSTTESGIAGQITFLGFTFGDRIYGFTDLLTLGSQGMLNFGIGYRLTVPQKKK"
     gene            complement(1585..2730)
                     /locus_tag="VI413_13800"
     CDS             complement(1585..2730)
                     /locus_tag="VI413_13800"
                     /inference="COORDINATES: protein motif:HMM:NF045576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BT_3928 family protein"
                     /protein_id="HEY6915745.1"
                     /translation="METNSSNIKKGPGAEKAGSILLEISRILLGCVFVFSGFVKAIDP
                     LGSTYKFDDYFRAFGGFFESFTHISFPLAILLSTIELVIGLNLILKVQFKITIFAALA
                     FMAVMTPLTLYIALKKDLVTDCGCFGDALVISNWATFWKNILFSALVVVILIYQQKIR
                     PYFVPKTQNILLAAFVAFSVGLSVYCFQHLPLIDFLPYKVGVNIPEAMQMPDNAPVDK
                     YETTFIYEKNGHQKEFTLENYPKGDSTWKFVDQKSVLVSEGYKAKIHDFSIVTVDFED
                     ITEQVLYDTGYTYLLVMYDLNKTSEKGAKEAENLYLQAQKAGAKFYALTASSDEEVEA
                     FKQKTGVTYPFCKTDPTALKTVIRANPGLMIIKNGTITGKWNWRDFE"
     gene            complement(2855..3397)
                     /locus_tag="VI413_13805"
     CDS             complement(2855..3397)
                     /locus_tag="VI413_13805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005941376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1599 domain-containing protein"
                     /protein_id="HEY6915746.1"
                     /translation="MSQTDQQFDQVAAICSDIFLKKMKDYGCSWRILRPQSVTDQIFI
                     KANRIRSIETKGVSKIDEGIRSELIAIVNYGIVGLIQLELGFSETDDLTYERGAELYT
                     KYLAEAKKLMTDKNHDYDEAWRIMRTESYTDLILMKIYRTKQIEDNQGKTLISEGIDA
                     NYFDMINYAVFGLIKMEEGE"
BASE COUNT         1096 a          786 c          612 g         1078 t
ORIGIN      
        1 gttgccaatg ccaacccttc ctgaagggtt ttgttcattt tccagtttcc tgcaacaatg
       61 ttttttctca tcttttttat aaattattaa tagtttgaaa atctcatttt tatatttcag
      121 tatactaacc actgataatt agtatagata gaagtcatgc cctgaaaagt aattttcact
      181 ttgcccgaac cgtcattcat atatctggct actgtttcaa cccttttatc ctgaaccgaa
      241 tcaactgctt caatagcaat ttcgccctcg ctgaagaaac gattcttccg gacgtatttt
      301 aaaggcgacg taatggtgca attcaatgta gcatcgcagt cataccggct aatatctatc
      361 cagattgcat cgccggacac actaaagtcc gaatcccgaa atcgtttagg agcaactgta
      421 tccgtacatt caatctccag attttctttt accggataaa ctgaataata agacattagc
      481 tgatgaatat tgagcctcca tttgttttta gaaatattct gaatagtcat ataatacgtc
      541 cagttattcc ctctcgccac ccactcagca cccgggctat gaatggattt agaatccgtt
      601 gtaatcacat agctggtatc attgtccagt ttaaaaacgt aatcagcacc tctgacagtc
      661 agactatatt gtccgaaatt ttcaaaaaga taatgcctct tcaacgaatc cggagtattc
      721 acataagtat ccacgaacaa cattttatca aacaattgca cctgatctac cacatctcgt
      781 tcaatcccgc gaaacatcga ccaaccggat tttgttagca cttctttatc ttccggctca
      841 cgaatcacgc atgagctgaa aaccacgata atcgcagaaa gaatcaatat aaaatgcttt
      901 gttctcatat catttcttct tttgcggaac agttaaacga tatccgatac caaaattcag
      961 catgccctgg ctacccagcg taagcaaatc ggtaaaacca tatatacgat ctccaaaagt
     1021 aaaaccaaga aacgttatct gtcctgcaat gccagattcc gtggttgatt tatcaaacac
     1081 atcccttaga ttatcgcgtt caaatataag ccgctgaccg ataccaaagg atgaatatgt
     1141 agttaatttg ccgcttctca accaggttat cctgatagtt ggatataatg acaaatgttg
     1201 tctcatgttt tggccgatac acctatcggt cactccatcg taataattat tatagtaggc
     1261 taagtagttg gcagtagcac ccacgccaaa ccaactgttc gcctgataaa tatattctac
     1321 aaaccacgaa tttgtggtat atcgtgcccc ggaataataa ttttcactct cgaaatacga
     1381 ctcttcaata aaatcggaat aatcgaaaaa ctttatatct gccgcttcaa aaggctttgc
     1441 ccccacccca aaacgaaaat tgtgctccgg tataaaccgt tgacctggca tcgggtaaaa
     1501 ttgctgtgca ccagcaaata ctgcaatacc taaaagcaaa aacaaaatga ttttcttttt
     1561 cattgaatac ggttttacgt tcaactattc aaaatcccgc cagttccact tcccggttat
     1621 agttccgttt ttaatgatca tcaaccccgg attggcacgg ataacagttt ttaatgccgt
     1681 agggtctgtc ttgcaaaacg gataggtcac ccctgttttt tgtttaaaag cctcaacttc
     1741 ttcgtccgac gaagctgtca acgcatagaa ttttgctccg gctttctgtg cttgcaggta
     1801 cagattctca gcttctttgg ctcctttttc cgaagtcttg ttcaggtcat acatcactaa
     1861 caggtaggta taaccagtat cgtaaagcac ttgctcggta atatcttcga aatcgacagt
     1921 tacaatagag aaatcatgaa tcttcgcttt gtaaccttcg gaaaccaaca ccgatttttg
     1981 gtctacaaat ttccaggtag aatcgccttt tggataattt tctaatgtga attctttttg
     2041 atgcccgttt ttctcataaa taaacgtagt ttcatattta tccaccggag cattatcggg
     2101 catctgcata gcttcgggga tattgacacc cactttatag ggcaagaagt caataagcgg
     2161 caagtgttgg aagcaataaa ccgacaagcc aacagaaaaa gccacaaagg cagccaacaa
     2221 tatattttgt gttttcggaa cgaaatatgg acggattttc tgctgataaa tgaggataac
     2281 aaccaccaaa gcactgaata aaatgttttt ccagaaagtg gcccaattac ttataaccaa
     2341 tgcatcgcca aagcatccgc aatcggtcac aaggtctttt ttcagggcaa tgtacagtgt
     2401 aagcggtgtc atcacggcca taaatgccaa tgccgcaaaa attgtgattt tgaattgaac
     2461 tttgagaatg agattgaggc caataaccag ttcaatagtt gaaagcagaa tggccagcgg
     2521 gaaagaaata tgcgtgaatg attcgaaaaa accaccgaat gcccggaaat aatcgtcgaa
     2581 cttataggtg gagccaagcg gatcaatagc ctttacaaaa ccagagaaaa caaaaacaca
     2641 gcctaataaa atccggctaa tttccaataa aatacttcca gccttttcag cacccggacc
     2701 ctttttaata ttgcttgaat tcgtttccat aatcatttta gtccctggcc cgtcagttga
     2761 cggagaacta tattaacatt atctttatta ttcagattat ttttagttat cgcttgccaa
     2821 aatcatcaca tcattaaatt atcacatcaa cacatcactc accctcttcc atttttatca
     2881 acccgaaaac tgcgtaattg atcatatcaa aatagttggc atcaatccct tccgaaatca
     2941 gtgtcttgcc ctggttgtct tcaatttgtt tggtgcggta aatcttcatc agaatcaagt
     3001 cggtatacga ttctgtacgc ataatgcgcc aggcttcgtc ataatcatgg tttttatccg
     3061 tcatcagttt tttagcttcg gccagatatt ttgtgtaaag ttccgcacca cgctcgtagg
     3121 tcaaatcatc agtttccgaa aaacccaatt ccagttgtat caacccgaca atgccgtaat
     3181 ttacaatggc aataagttcg gaacgaattc cttcatctat tttcgaaact cctttagttt
     3241 ctatactgcg aatacgattg gctttgatga agatttggtc ggtaaccgat tgcggacgca
     3301 aaatacgcca cgaacaaccg taatctttca tttttttaag gaaaatatcg ctgcaaatag
     3361 cggcaacctg atcgaattgt tggtcggttt gactcattgg aatgattagt taatcagtta
     3421 ttgagttatt aagttgactg gttgataaag tatatatgtt cttaaattac aaacattaga
     3481 cacacacgta caaaaccggt aaactctttt ttaggagcca caaaggtaca attttttgtt
     3541 gaaaagacaa aggttattga tgtgatgatt ag
//
LOCUS       DATDNM010000826         2126 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_738527, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000826 DATDNM010000000
VERSION     DATDNM010000826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_738527"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..479
                     /locus_tag="VI413_13810"
     CDS             <1..479
                     /locus_tag="VI413_13810"
                     /inference="COORDINATES: protein motif:HMM:NF037043.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEY6915747.1"
                     /translation="EHTNQKIKTINFVKTNKTEVFEFYQHEEATTQITYTKVAEKYLY
                     EPNASVMKSGAFKLVASRFELHKLHKNTHLYTSNELQPDFPGRIFEIKKQWRNSKKEL
                     KELTDQIPKANISTRNYPVSVDELHKKLKIKNGGEVYLFGCTLTNEEKTILECRKL"
     gene            complement(796..1380)
                     /locus_tag="VI413_13815"
     CDS             complement(796..1380)
                     /locus_tag="VI413_13815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915748.1"
                     /translation="MNSKIILLLISVLVLSFFGQIHAKDTVGKQLFRNINIGWDVNRT
                     NDYRWSNFRLGTAYGKKLEFNPKLSWQIGANFNWSKYKIYSDGALALSSYDDILRTRS
                     LSFPFLVSYDISKTFFHGMKVYTGPTYEMILSSSLNRISYYDLRTSQLGWTVGTKIRF
                     LAIFSAKLALNYYPTGLFNNGDLNRSSVSFSLGF"
     gene            complement(1491..>2126)
                     /locus_tag="VI413_13820"
     CDS             complement(1491..>2126)
                     /locus_tag="VI413_13820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEY6915749.1"
                     /translation="LGPQLAQNIVDFRAENGAFKSRKQLMKVTKMGAKTFEQCAGFLR
                     IPDAEYILDNSAVHPESYSIVEHMAKDLKVDVKELVQNKELRKSIDLQKYITPTVGLP
                     TLNDIMQELEKPGRDPRSGIKVFEFDANVKTISDLRTGMELPGIVTNITNFGAFVDIG
                     IKENGLVHVSQMADRYISNPAEVVSVHQHVKVRVMEVDAVRKRVQLKLLQA"
BASE COUNT          720 a          436 c          337 g          633 t
ORIGIN      
        1 aggaacatac aaatcagaaa atcaagacaa taaactttgt aaaaaccaat aaaaccgaag
       61 tgtttgagtt ttaccagcat gaagaagcca caactcaaat tacgtacaca aaggttgccg
      121 aaaaatatct gtacgaaccc aatgcctctg tgatgaaaag cggagctttt aagctcgtag
      181 ccagtcgatt tgaactacat aaactacata aaaatactca cttatacact tccaacgaat
      241 tacaacccga tttcccggga agaatttttg aaataaaaaa gcaatggaga aactccaaaa
      301 aagagctgaa agagctaacc gatcaaatcc caaaagccaa tatcagcacc cgcaattatc
      361 cggtttcggt tgacgaactg cacaaaaagc taaaaatcaa aaacggcggc gaagtgtatt
      421 tatttggttg cactctgact aacgaggaaa aaaccatact tgaatgtaga aaattatagt
      481 aaagcacgcg ggtatattta acgggctgta ttttcattcc ttgaaatata gcccgattct
      541 ttataaaata taaattcatc aattatcttt atcgaaatcc cctggcaaat gtactatgta
      601 actatcaaaa aagacattct ctttcctttt gaattatcat ctgcaagtgt tttttacatt
      661 gggttcctga caagccaggc tgcaaggata ggcgtacaaa ctctaattat tctttttgtc
      721 tctcaagaaa cacatcataa taaaaaagat gcaatttcat ttttgaaaac caacttaatc
      781 aaagcaatca taccgttaaa atcccaacga aaaacttacc gatgaacgat tcagatcacc
      841 attattaaaa agtccggttg gataataatt caaagctaat tttgcactaa atatagccag
      901 aaaacgaatt ttagttccaa cagtccaacc caattggctg gttcttaagt cataataaga
      961 gattcgattt aatgaagatg ataaaatcat ttcataagtc ggaccggtat aaaccttcat
     1021 tccatgaaaa aaagtcttac ttatatcgta actaacaagg aatggaaaag acaaggatct
     1081 ggtccttaat atatcatcgt aactgcttaa agccaaagca ccgtcggaat aaattttgta
     1141 cttgctccag ttaaagttgg ccccaatttg ccaggacaac ttcggattga attcaagttt
     1201 ttttccataa gcagtaccca aacggaaatt actccaccgg taatcattgg tacggtttac
     1261 atcccaacca atatttatat ttctaaatag ctgcttgcca actgtatctt tagcatgaat
     1321 ttgcccaaaa aaacttaaaa caagcacaga aatcagtagt aaaattattt tgctgttcat
     1381 tttagtgaat ttatttattt ttgcatcaac aatcatattt tatgccaaaa caaaataaaa
     1441 tattcatttt gattgctttt taatatttaa tcataagccg aaacaaatgt ttaagcctga
     1501 agcaacttca attgaactcg tttacggact gcatcgacct ccattacccg tacttttaca
     1561 tgctgatgca ccgaaacaac ttcagccgga ttactgatgt agcgatcggc catttgtgat
     1621 acgtgtacaa gcccattttc tttaatacct atatctacaa aagccccgaa gttagtgata
     1681 ttggtaacaa ttccgggtaa ttccatacct gttcgcaagt cggaaatggt tttcacattc
     1741 gcatcaaatt caaaaacttt gattccactt cgcggatcgc gtcccggttt ttcgagttcc
     1801 tgcattatat catttaacgt gggcagccca actgtcggag ttatatattt ttgtaaatca
     1861 atactttttc gaagctcttt attctgtacc aattctttca catccacttt caggtctttg
     1921 gccatgtgct caacgatgct ataactttca ggatgaacgg ctgaattatc aagaatatat
     1981 tccgcatcgg gtatacgtag aaaacctgca cactgttcga aggtttttgc acccattttc
     2041 gtcactttca taagctgttt ccggcttttg aaggcgccgt tttcggctct gaaatcaaca
     2101 atattctgtg ccagctgtgg accaag
//
LOCUS       DATDNM010000827         4547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1488553, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000827 DATDNM010000000
VERSION     DATDNM010000827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4547
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1488553"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(228..806)
                     /locus_tag="VI413_13825"
     CDS             complement(228..806)
                     /locus_tag="VI413_13825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915750.1"
                     /translation="MKQILFIILLICFPYSNSFAEETSKTLNSTTTQVEFSKSDLANF
                     NEVAQISEDTIIIKKKFTEVYGYKNGELLNYADYKVLFANAPEALRLIELSKSHHRIG
                     NLLGFVGGFMFGFIGVMGLKNIDSVDYTWGKALGISAAVTGVGFLIYQVGNYSQIKAI
                     NIYNKNNYRVNEKIGYLKVGFTNSGIGIAYNF"
     gene            complement(1578..3896)
                     /locus_tag="VI413_13830"
     CDS             complement(1578..3896)
                     /locus_tag="VI413_13830"
                     /EC_number="3.1.6.-"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arylsulfatase"
                     /protein_id="HEY6915751.1"
                     /translation="MNKLYLKTSSFGLLVTSLLTSVFGQNTQPLTSAIGFKGKINRTA
                     AESEEAWPDKILAPQGAPNVVVWLIDDAGYGTSSAFGGLMETPVLDSLANNGLRYTNF
                     HSTGVSSPTRAALLTGRNHHSVHMGTLNYSSSGYPGYDAIMPGDKATIAEVLHENGYN
                     NFAVGKYHVAPLEEITANGPFDRWAVGRGFDHFYGFQLGHTDQYHPNLYEDRKVIDIE
                     PNTKHLTTLLADKAISYIANQKSIQPEKPFFLYFATGAIHSPHQVDKKWSDLYKGKFD
                     KGWDWYREEVFARQKRLGVISADAVLPDRDPTVKSWDSLTPEQRKVYARFMEVYAGFL
                     THADYEFGRIVNYLKEIGQDKNTVILVSIGDNGSSHSPRNGSFNGYISSLDEDKQVAE
                     LYKNIDKIGTEHSFEDAPSGWTQATNTPFRLWKADPNSEGGTHQPLIVYYPNGGLEKG
                     GIRGQYGHVIDIAPTIYELTGAKVPEVIKGYKQQPIEGTSLVYSLKNADAPNRHTVQY
                     YELFGKRAIVKDGWKASVFHQSGTDFSKDVWELYDLKKDFNERINLAAKFPDKVKELQ
                     AVFEQEAIKYNVYPLNDNALGHSAGGRARSPYGLNKKVVLYPGIDQLLTYSGPQFQGD
                     PFTITADVELKSANEQGVLFATGSEFDGLSLYIKDGKFQVAHNTGTIVRYLESNIAVP
                     VGKSSLKLELNYTAPAEKGRRNFTAPAGTEAIYINNQKVAERDIVASEGYIAIYKDGI
                     DVGSDRNSPVTDHYKVPFAFTGKLNNVTIEYK"
     gene            complement(3915..>4547)
                     /locus_tag="VI413_13835"
     CDS             complement(3915..>4547)
                     /locus_tag="VI413_13835"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEY6915752.1"
                     /translation="INGTFRDVQGRNVYGTIGHGDKYIVVSTPISGWFTCGGERGSGI
                     AIWLALARWAADQQLGYTFVFTGNSGHEHAFRGAHEFLERNAPPVEKTKLWIHFGAGA
                     ATLEWKNTANGLVKQTNVDPNRRFYFSSDVKEAFEKSFKDIEAQKILANKNPGGELVY
                     VAQKGYTRFAGVSYAHPFFHVKTDDENTTSAEILEVTAKAFRDLILEETK"
BASE COUNT         1263 a          977 c          855 g         1452 t
ORIGIN      
        1 ctacccagtc tgtaatggtg aaagtcagaa aataaacact gttttgtttt tgtatgcata
       61 attctcggct gacatgtttc aggttttgta aagtattgtt gtgtcgttgc aaacgaggaa
      121 ccatataccc ctcgttacaa acgaggggga gtggaatcat ttcatattag aatcttacaa
      181 attgtatctt tttctctatg tattttgtaa aataaaatta ttatctctta aaaattatat
      241 gcgattccga tacctgaatt tgtaaatccg actttcaagt agccaatctt ttcattaact
      301 ctataattat ttttattgta aatatttatt gcctttattt ggctataatt tcctacttga
      361 tatatgagaa atcctacacc tgtaacagca gcagaaatac ctaaagcctt tccccaagta
      421 taatctacac tgtcaatatt ctttagtccc attaccccaa taaaaccaaa cataaaacct
      481 ccaacaaacc ccaataaatt accaattcta tgatgtgatt tagataattc aattaatctc
      541 aatgcttcag gtgcatttgc aaataacact ttataatcag cataattaag gagttctcca
      601 tttttgtatc catatacttc tgtgaatttc tttttaataa taatagtgtc ttctgatatt
      661 tgcgccactt cattaaaatt agctaagtct gattttgaga actcaacttg tgtggtagtt
      721 gagtttaaag tttttgacgt ttcctctgca aaactgttgc tatatggaaa acaaattaat
      781 agaataataa ataaaatctg tttcatgttt gttttaatat tttaatttta gataagtaat
      841 tcaatctttt aaactgttgt ttttcactgt aaattgtgta aagcaacatc atttttattt
      901 ttttgctgtt gccccttact aaatgctata tgaattacca gttcgcatat ttctactata
      961 gaagcaatgg tctcgaatta gtcacttttt ttgcagcccc aaagttatta aacattttgg
     1021 aactattaac aggaattgta aaaaaacctt ttccggtgag catactgccg gaaaaggttt
     1081 ttgaatggat gtaatttctg tttaaacttc tactcctggg gtaggagtgg gtgtttctat
     1141 ttctatttgt acagaggcat gttacagtat taaagatgaa aaccagaaaa acttctttgt
     1201 tgaaactcct gggagcgtat aaatgtggtt ttgctgggaa caaattatcc accatccccc
     1261 tgcaatttgc attgaaaagg cgatgatgga taaaaagaga ataaaactaa aaaacaagtg
     1321 gaataataac gaggtatttt gagatttctg attcttgtta ttattcatag cactcccgcg
     1381 attcgcatcg aaagaaagcc attctaagtt ttgacaaaaa tgaaaattag ttattcatcc
     1441 gttcactcaa aactaagttt taaaaattgc ttatccattg tttctccgcg attcacatcg
     1501 aagaaaaaca acttgacaag cctaattaaa cgacaaaatt tgtatggatt tcgaaaaatt
     1561 taaacggagc attactttta tttatattca atcgtcacat tatttaattt gccggtgaaa
     1621 gcaaaaggta ctttataatg gtcggtaacc ggtgaattcc tatcggaacc gacatcaatc
     1681 ccatccttgt aaatagctat atacccttcg gaagccacaa tatccctttc ggccaccttc
     1741 tgattgttta tataaatggc ttctgttccg gcgggagctg taaagtttcg tcttcctttt
     1801 tcggcaggtg ctgtgtaatt taattccagc ttcaaacttg atttaccaac aggtacggct
     1861 atgttcgact ccagatagcg gacaatagtt ccggtattat gagccacctg aaatttaccg
     1921 tcctttatgt ataaacttaa gccgtcgaac tcggaacctg tggcaaacaa aactccttgt
     1981 tcgtttgctg atttcaactc tacatcagcc gtaattgtaa acggatcgcc ctgaaactgt
     2041 ggaccgctgt aggtcagcaa ctgatcgata ccggggtaca aaaccacttt cttattcagg
     2101 ccataagggc tgcgagcccg gccacctgca ctatgtccca atgcattgtc atttaaaggg
     2161 tacacgttgt atttaatggc ttcctgttca aatacggcct gaagttcttt tactttatca
     2221 gggaatttag ctgccaaatt gatacgttcg ttgaagtctt ttttcaagtc gtaaagttcc
     2281 cacacatctt tcgaaaaatc ggttccggat tggtgaaaga ccgatgcttt ccaaccatct
     2341 tttacaatgg ctcgctttcc aaacaactca taatactgca ctgtgtggcg gtttggcgca
     2401 tccgcatttt taagcgaata aaccaggctt gtcccttcga ttggttgctg tttatagccc
     2461 ttaattactt cgggaacttt cgcgcctgtc agttcgtaaa ttgttggggc aatatcaatc
     2521 acatgaccat attgtccgcg gattccacct ttttccaatc ctccatttgg ataataaaca
     2581 atcaacggtt ggtgcgtgcc gccttcactg ttcgggtcgg ctttccacaa ccggaaaggc
     2641 gtattggtag cctgagtcca acccgaaggt gcatcttcga atgaatgttc cgtaccgatt
     2701 ttatcaatat ttttatatag ttcggctact tgcttgtctt catccaagct gctgatatac
     2761 ccgttgaaac ttccgtttcg cggactatgg ctcgaaccat tgtcaccaat acttaccaga
     2821 atgacggtgt ttttatcctg tccgatttct ttcaggtagt tcacaatacg gccgaattca
     2881 taatcggcat gcgtcaggaa accggcatac acttccataa atcgggcata cacttttcgc
     2941 tgttcaggcg taaggctatc ccatgatttt acggtcgggt cgcggtcggg caacacggca
     3001 tctgccgaaa ttactcccag tcttttctga cgggcaaaca cttcttcgcg gtaccaatcc
     3061 caacccttgt cgaacttgcc tttgtacaaa tcgctccatt tcttatccac ctggtgtggc
     3121 gagtggatgg ctccggtagc aaaataaagg aaaaacggtt tttcaggttg aatagatttt
     3181 tgattggcaa tataactaat ggctttatct gccagcaaag tggtcaaatg tttggtgttt
     3241 ggttcaatgt caatcacttt ccggtcttcg tacaaattag gatgatactg atcggtgtgg
     3301 ccgagctgga aaccgtagaa atggtcgaac ccacgaccga cagcccaacg gtcgaaaggt
     3361 ccgttagcgg taatttcttc cagtggagcc acgtgatatt tacccacagc aaaattattg
     3421 taaccatttt cgtgaagcac ctcggcaatg gttgctttat cgccgggcat aatggcatcg
     3481 tacccgggat aaccgcttga actataattc aacgtgccca tgtgaacgga gtgatggttg
     3541 cggcctgtga gcaaggctgc gcgcgttgga gaactaacac cggtagagtg aaaattagtg
     3601 tagcgcaagc cgttgtttgc caggctatcc aatacgggag tttccattaa accgccaaaa
     3661 gcactggaag ttccataacc tgcatcatca atcagccaca ctaccacatt gggtgcacct
     3721 tgtggtgcta aaattttgtc aggccatgct tcttccgatt cggcggctgt cctgtttatt
     3781 ttccccttga atccaatggc cgatgtcaat ggctgggtat tctgtccgaa tacgctcgtc
     3841 aataatgacg ttaccagcag tccgaaactg cttgttttta aatacaattt gttcatctga
     3901 atatctttta ataattattt tgtttcttct aaaatcaaat ctctgaatgc ttttgctgtt
     3961 acttccagta tttctgccga agtggtgttt tcatcatctg tttttacatg aaagaatgga
     4021 tgcgcatacg atacgccggc aaaacgggta tagccttttt gagccacgta aaccaattcg
     4081 cctccaggat ttttattcgc caaaatcttt tgtgcttcaa tgtctttaaa tgatttttca
     4141 aaagcctcct taacatcact gctgaaatag aaccggcggt tggggtcaac attcgtttgt
     4201 tttaccagac cgtttgccgt gtttttccat tccaacgtag ctgcaccggc gccaaaatga
     4261 atccataact tggttttttc aacaggaggt gcattgcgtt ccagaaattc atgtgcgccc
     4321 ctgaaagcat gctcatgacc cgaattaccg gtaaatacaa aagtgtaacc caattgttgg
     4381 tcggcagccc acctggcaag agccaaccag atagctatgc cggaaccgcg ttcgccacca
     4441 caggtaaacc agccgctgat gggcgttgaa acaacaatat acttatcccc gtgaccaata
     4501 gttccgtata catttcttcc ctgcacatcc ctgaaagttc catttat
//
LOCUS       DATDNM010000828         2777 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1700890, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000828 DATDNM010000000
VERSION     DATDNM010000828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2777
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1700890"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..692)
                     /locus_tag="VI413_13840"
     CDS             complement(<1..692)
                     /locus_tag="VI413_13840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase U32 family protein"
                     /protein_id="HEY6915753.1"
                     /translation="MTIELLSPAKNLECGIAAVNHGADAVYIGATQFGARAAAGNSVE
                     DIATLVQYAHQFRVKVLVALNTILTDDQLPDAEKLIWEIYNTGADALIIQDMGILKLN
                     LPPIALHASTQTDNRTVKKARFLQDVGFSRVVLARELTLEQISEMSSNTDVELEAFVH
                     GALCVSYSGQCYMSEANCGRSANRGQCAQYCRLPYQLLDADDNILVRNKHLLSLKDLD
                     QSESLQEMMEAGV"
     gene            complement(821..1738)
                     /gene="metA"
                     /locus_tag="VI413_13845"
     CDS             complement(821..1738)
                     /gene="metA"
                     /locus_tag="VI413_13845"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008899 - homoserine O-succinyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEY6915754.1"
                     /translation="MPLNIPTTLPAVDVLREENIFVMDSERASSQEIRPLKIVILNLM
                     PIKITTETDLIRLLSNSPLQIEIDFLHMESHTSKNTPIEHLTAFYKTFDEISQSNYDG
                     MIITGAPVELLEFEEVTYWSEITKIFDWAKTHVTSTFFICWAAQAGLYHYYGIPKYPL
                     DAKMFGVFEHFKHEQHNPIFRGFDDVFYVPHSRHTEVRAEDIRRVPELTLLSESPESG
                     VYMAMARNGREFFITGHSEYSPLTLDTEYKRDLAKGLPINMPKNYYLNDDPNNEPLVR
                     WRSHANLLFTNWLNYFVYQETPYDLTKIH"
     gene            complement(1806..2654)
                     /locus_tag="VI413_13850"
     CDS             complement(1806..2654)
                     /locus_tag="VI413_13850"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEY6915755.1"
                     /translation="MKKLFPVIKFEKITLNRKVLIGLGVVVLFLLVEIFVFNRQKRNK
                     IHDLPAILESGRLAVLTDSSRLGFSVKGDSVYGFQYEIVKAFADTLGVELVITEESNL
                     KTCMEGLKNGDYDIIASFIPVTTEWKKDALFTIPLYTSRQVLVQRIDGDSLPAKLIRN
                     HVDLANETIFVPENSPYKMRLEHLSDEIANPIHVMEMKSKSAEQMVHMVAQGKIKYTI
                     CDEQVAQQLKLQYSNIDVSLPVGFEQEQAWAVHSGSTKLLEELNSFLNDFIGSSAYWK
                     IYRKYY"
BASE COUNT          833 a          611 c          499 g          834 t
ORIGIN      
        1 actccggctt ccatcatttc ttgtaatgac tccgattgat ccaaatcttt cagagaaagc
       61 aaatgtttgt ttctcaccaa tatattatca tcggcatcca gcaattgata aggcaaacga
      121 caatattgtg cacactgccc acgattggca ctgcgtccgc aattagcctc gctcatataa
      181 cactgaccgc tgtaactgac acacaaagca ccatgtacaa aagcttccag ttcaacatcc
      241 gtattcgaag acatttcact tatttgttcc agagtaagtt cacgagccaa aaccacccgc
      301 gaaaaaccga catcctgtaa gaatctggct tttttgacag tccggttatc cgtttgtgta
      361 ctggcatgaa gggcaatagg tggcaaattc agtttcagga tgcccatatc ctgaataatc
      421 aatgcatcag cccccgtatt gtatatttcc caaatcaact tttcagcatc gggcaattgg
      481 tcatcagtca gaatagtatt taaagccact aacaccttta cccgaaattg atgggcatat
      541 tgaaccaaag tggcaatatc ttccaccgaa tttccggcag cagcacgcgc accaaattgc
      601 gttgcaccaa tatacacagc atcagcaccg tgatttacag cagcaattcc acattcaagg
      661 ttcttggccg gagagagaag ttcgatagtc ataatgtagt gatgtggtga tgtagtgata
      721 tggtgatgtg atgatatgat actgtggtga tgtggtaatt tgttagtttt ataagaacaa
      781 tcagctcatt agcacattat cacatcatca cattatcaca ttaatgtatt ttcgtcaaat
      841 cgtacggagt ttcctgataa acgaaatagt tgagccagtt agtgaacaac agattggcat
      901 gactgcgcca gcgaaccaat ggttcgttgt ttggatcatc gttcagataa tagtttttag
      961 gcatattgat tggaagtcct tttgccaaat cgcgcttata ctcagtatcc aacgttaatg
     1021 gtgaatattc tgaatggccg gtaataaaga actcacggcc attgcgggcc atagccatat
     1081 aaacaccaga ttctggtgat tcggagagta aagtcagctc cggcacacgg cggatatctt
     1141 cggcacgcac ttcagtgtgg cggctatgag gcacataaaa cacatcgtca aaaccacgga
     1201 agatcggatt gtgttgctca tgcttaaaat gttcaaacac accaaacatc ttagcatcca
     1261 acggatattt tggtatgccg taataatgat acagtccggc ctgtgcagcc caacaaataa
     1321 agaatgtaga agttacatgt gtctttgccc aatcaaatat tttggtaatt tccgaccagt
     1381 aagtcacttc ttcaaattcc aaaagctcta ctggcgcacc ggtaataatc attccatcgt
     1441 agttgctctg gcttatttca tcaaacgttt tgtaaaaagc cgttagatgt tctataggcg
     1501 tatttttaga cgtatgactt tccatgtgca gaaaatcaat ctcaatctga agcggcgagt
     1561 tagacagcaa gcggattaaa tccgtttctg ttgttatttt aatcggcatt aaattcagaa
     1621 tcacgatttt aagcggacga atctcctggc tggaagcacg ttctgaatcc ataacaaaga
     1681 tattctcttc gcggagaaca tctacagccg gtaatgttgt aggaatattt aatggcattg
     1741 tttcttagtt tgtaaaatgt gaaagatttg acatcttttt ctttaatctg taatcttggt
     1801 cctgtctaat aatatttcct atagattttc caataagctg aactgccaat aaaatcattc
     1861 agaaaactat ttaattcttc aagcaattta gttgatcccg aatgaaccgc ccaagcttgc
     1921 tcctgttcaa aacctaccgg caatgaaaca tctatatttg aatactgcaa tttcaactgt
     1981 tgtgcaacct gttcatcgca aatggtatat ttaatttttc cttgtgccac catatgtacc
     2041 atttgttctg cactcttgct tttcatttcc attacatgaa tcggatttgc tatctcatca
     2101 gacaagtgtt ccaaacgcat tttgtacggc gaattttcag gcacaaaaat agtttcattc
     2161 gccaggtcaa catgatttct aatcagcttt gcgggtaaag aatctccatc gatccgttgc
     2221 accaaaacct gccgggaagt atacaacggg atagtgaaca gcgcatcttt cttccattca
     2281 gttgttacag gtataaaact ggcaattata tcataatcac catttttcaa accttccatg
     2341 caagttttca ggttgctttc ttccgttata acaagttcaa ctcccagcgt atccgcaaac
     2401 gcttttacaa tctcatactg aaacccataa acactgtcac cttttacaga aaacccgaga
     2461 cgactgctat ctgtgagcac tgccaaccgg cccgactcaa ggattgcagg caaatcatgt
     2521 atcttatttc gtttctgacg attaaaaaca aaaatttcaa ccagcaaaaa caatactacc
     2581 acacccaaac caatcaacac ctttctattc agggtgattt tttcgaattt aataactggg
     2641 aacagttttt tcatggcata attttgaata aatttctcaa tcagcaactc cttttaatcg
     2701 tagaaattcc atgaaattcc ggttttcaca ttggccggat ttattggata atttggcata
     2761 gagaaataat caccttt
//
LOCUS       DATDNM010000829         2758 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1379867, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000829 DATDNM010000000
VERSION     DATDNM010000829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1379867"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VI413_13855"
     CDS             <1..203
                     /locus_tag="VI413_13855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008149022.1"
                     /note="heat shock protein 70; assists in folding of
                     nascent polypeptide chains; refolding of misfolded
                     proteins; utilizes ATPase activity to help fold;
                     co-chaperones are DnaJ and GrpE; multiple copies in some
                     bacteria; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEY6915756.1"
                     /translation="KAQDLDGIDAATNEVNAAFQAASQEMYNAQNAQGAQQPGADFGG
                     QQQSQSGNQQGDVTDVDFEEVK"
     gene            complement(332..1195)
                     /locus_tag="VI413_13860"
     CDS             complement(332..1195)
                     /locus_tag="VI413_13860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008143717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY6915757.1"
                     /translation="MIAISSEILLNAQHNLLTNSLYITKIGFFPAVKYHYNKKENGVD
                     YYILIYCTAGEGWCKVGEKTYSVTENQYIILPPDTPYSFGANTANPWTIYWVHFKGKL
                     AASFFKPPIVPQQILSSQDSRLQDRIQLFEEIYENLELSFHSDHYCYATLCLFHFLAS
                     FKYIDQFRQIRKKDVAEFRFSEKVIYYMRENVESNLTLEHLSKHFGFSPSHFSARFQE
                     ETKQSPIKYFIALKIEKACQYIELSNMKICDIYPKLGFQDAAYFSRMFTKVMGVSPVK
                     YREMERHTNAQ"
     gene            1376..>2758
                     /locus_tag="VI413_13865"
     CDS             1376..>2758
                     /locus_tag="VI413_13865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009274966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I mannose-6-phosphate isomerase"
                     /protein_id="HEY6915758.1"
                     /translation="MQMSNYNKTPFFPLHESLCKGWDSIINKINPEVKNSNRYVLVVE
                     CYQGVYHNELLEGFGRLNPDVLIKSEDAFYPEEKIREITFPDVTDDAIFGYMTRLTYD
                     KLLDPEKVEALREKINNATGLVIVYGHAAAIIAEESDCLVYADMARWEIQLRQRKHEV
                     NNIGLRNADEAPGIQYKRGFFVDWRLCDKLKQQLFERADFWLDTNKANNPKMISAKTM
                     LHGLSEVAKSPFRVVPYFDPGPWGGQWMKDVCGLDKTKPNFAWSFDGVPEENSLLFKI
                     DDEIFEIPSINLVFYKSKELLGEPVESRFGKEFPIRFDFLDTIGGGNLSLQVHPTTQY
                     IRDTFGMNYTQDESYYMLDAKEDATVFLGLKTGIDSGEMIADLQKAQDTGETFEAEKY
                     VNVFPAKKHDHFLIPNGTVHCSGINGMVLEISATPYIFTFKLYDWGRLGLDGEPRAIN
                     IEHGSKVINWD"
BASE COUNT          873 a          546 c          576 g          763 t
ORIGIN      
        1 acaaagctca ggatcttgac ggaattgatg ctgctactaa cgaagtgaat gctgcattcc
       61 aggctgcaag tcaggaaatg tacaatgctc aaaatgcaca gggcgcacaa caaccggggg
      121 ctgactttgg aggccaacaa caaagccaaa gcggaaacca acaaggcgat gtaactgatg
      181 ttgattttga agaagtgaaa taaaaggccc taaatcccct aaaggggaac ttaagataga
      241 aaccgcccaa tctgaaattt cagattgggc ggttttgctt ttagacctaa agatgtaata
      301 tcgaaatatt gactcgaatc ttgattaagg tctattgcgc attagtatgt ctttccattt
      361 cgcgatactt aaccggtgaa actcccatca ccttagtaaa catccgacta aaataggcag
      421 catcctgaaa ccctaatttc ggataaatgt cgcaaatctt catatttgac agttcaatat
      481 actggcaggc tttttcaatt ttcagggcaa taaaatactt aatgggcgac tgttttgttt
      541 cttcctgaaa ccgggctgaa aaatgggatg gcgaaaaccc aaaatgcttt gacaaatgct
      601 ccagtgtcag attactttcc acattctccc gcatgtaata aataactttc tcactaaagc
      661 ggaattccgc aacatccttt ttccgtatct gcctgaactg atcaatgtat ttgaatgaag
      721 ccaaaaaatg gaacaaacag agcgttgcat agcaataatg atcgctatgg aaacttaact
      781 ccagattttc ataaatctct tcgaacagtt gaatcctatc ctgcaatctg gaatcctgac
      841 tggacaaaat ttgttgtgga acgataggtg gtttaaagaa ggatgctgcc agcttgcctt
      901 taaaatgaac ccagtaaata gtccagggat ttgcggtgtt ggctccgaag ctataaggcg
      961 tatcaggtgg aagaattatg tactgatttt ccgtcaccga ataggtcttt tctcctactt
     1021 tacaccaacc ttcacccgcc gtacaataga taagaatata ataatccacc ccgttttcct
     1081 tcttgttgta atgatatttt actgccggaa agaatccaat tttagtaata tacaaactat
     1141 ttgtcagcaa gttatgctga gcatttagca atatctcaga gctaatagct atcaatctct
     1201 gccctttaaa tccttgtttt aaccgtatca taacacaaaa gaataaaatc gtaagatagt
     1261 acaagtaaat cgcaacaaag ttatatgttt ttattcgaaa acagtcagat atttgcatcg
     1321 gatttagaat taatcccaag cgtcacaaat aagataacaa ttgctcatta attaaataca
     1381 aatgtcaaat tacaacaaga cccctttctt cccgctccat gaaagcctgt gtaaaggttg
     1441 ggacagtata atcaacaaaa taaatccgga ggtaaaaaat tccaatcggt acgtattagt
     1501 agttgaatgt taccaggggg tttatcacaa tgaattgctt gaagggttcg gccgcttaaa
     1561 cccggacgtc ctgattaaat cggaagatgc tttctatccg gaagagaaaa tacgggaaat
     1621 tacttttccc gatgtaacgg atgatgccat tttcgggtat atgacccgat tgacctacga
     1681 caaactgctt gatccggaaa aagtagaagc gttacgcgaa aaaatcaata atgctaccgg
     1741 actggtcatc gtttacggcc atgcagcagc gattattgca gaagaatcag attgtttggt
     1801 gtatgccgat atggcgcgct gggaaattca gctcagacaa cggaagcatg aagtaaacaa
     1861 cattggcctt agaaacgctg acgaggctcc ggggattcaa tacaagcgag gcttttttgt
     1921 tgactggcgc ttatgcgaca aactgaaaca acagcttttt gaaagagctg atttttggct
     1981 ggataccaac aaggccaata atccaaaaat gatttcagca aagaccatgt tacatggatt
     2041 gtcggaagtg gcaaaatctc cattccgggt tgttccctat ttcgatccgg gaccgtgggg
     2101 tggccagtgg atgaaggatg tttgcgggct cgacaaaacg aaaccaaact ttgcctggtc
     2161 gtttgatggt gttccggaag aaaacagttt gctttttaaa attgacgatg aaatttttga
     2221 aatcccgagt ataaatctgg ttttctataa aagtaaagaa ctccttggag aacccgttga
     2281 atcgcgcttt gggaaagagt tccctatccg tttcgacttt ctggacacca ttggtggtgg
     2341 aaatttgagt ttgcaggtac atccaaccac ccaatatatt cgtgatactt ttggaatgaa
     2401 ttatacgcag gacgaaagtt attacatgct tgatgccaaa gaggatgcca ctgtatttct
     2461 gggtttaaaa accggaattg actccggtga aatgattgcc gatttacaaa aagctcagga
     2521 cacgggtgaa actttcgagg ctgaaaaata cgtaaatgtt tttccggcaa agaaacatga
     2581 ccattttctg attcctaacg gaacagttca ttgctcaggt ataaacggaa tggtactgga
     2641 aataagcgca actccttaca tttttacctt taagctttac gattggggcc gacttggatt
     2701 ggacggagaa ccacgggcca ttaacattga acatggttct aaagtaatta actgggat
//
LOCUS       DATDNM010000830         2808 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1060581, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000830 DATDNM010000000
VERSION     DATDNM010000830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1060581"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..209)
                     /locus_tag="VI413_13870"
     CDS             complement(<1..209)
                     /locus_tag="VI413_13870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915759.1"
                     /translation="MAFGLTPKFKRELNPGEITAEQFLIISVETVKKIGWNISQITEN
                     GFIAYTKTSFSSWGEEFRITINGNSA"
     gene            complement(401..925)
                     /locus_tag="VI413_13875"
     CDS             complement(401..925)
                     /locus_tag="VI413_13875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915760.1"
                     /translation="MLNNGKAKIDDTFNELRIEIPTKKNWFVVVFIAIWMTGWFMGIT
                     GSVEGFGVDAFSTIWLIGWTAGGLSAVFFLIWSLLGKEIIQIDYEYFVIEKSILGLGT
                     KKRLAIADVQNIRYEYVDTNMSFEKNNSLSTIGLGIGPIRVDYGLKTYSFGLAVDEAE
                     AKYLIELIRKKTKK"
     gene            complement(999..1334)
                     /locus_tag="VI413_13880"
     CDS             complement(999..1334)
                     /locus_tag="VI413_13880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915761.1"
                     /translation="MEPIHKLITKYGLILAFSALIGHSWVYLQMLLFPPNQYNYYEIW
                     RAIPNYVVYFVQVLVCILLIIDIRKYRIQFWLVPVMGLFYPLVGICAFLILYIYQKEN
                     STLTGNKIQ"
     gene            complement(1318..1782)
                     /locus_tag="VI413_13885"
     CDS             complement(1318..1782)
                     /locus_tag="VI413_13885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915762.1"
                     /translation="MKRRDRLRTVFTEKIIELIHDKLPALLQHKDISMNVEIFKKQLR
                     KYFFLMTGFYIGIRLIVFIVLMVFPDLLTIHFPDHSFRTVSSNYLIVALEYLTNLIFI
                     YLINKDMKQTGQRSVPVLIVTFFYSTAGVLFYLILLFASNYKSTNIKYGTNS"
     gene            complement(1786..>2808)
                     /locus_tag="VI413_13890"
     CDS             complement(1786..>2808)
                     /locus_tag="VI413_13890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915763.1"
                     /translation="IGSEYQYNSSGGYSVVRFKESDVLKSNQLGATIYFYKAIQQLNA
                     RQNEEAYRLISKACYLYPDETFINSMYRMLTDRMNECKFDKIEDVDILGQISRFDANN
                     YDNIRKSFHNILGRGIDKNDMAFCTAAYNRLLPQINDVMLADEISYVYYLGLAYSHRF
                     AQGGLEPAFQALKLRPNDKFALNVIESTLSNMQYRYDDKRALLDTLNRYEIQLNNTNV
                     SDVMKNIKLLLYLDIAKEFFMRNKPKEGVQYLSLFESGFKLPLPNTDFKVKIENAYYE
                     YARYYVRFNNRAMAQKIVNKGLEYIPHSNMIESATYNIPVNKPVITHRKMNKAEYDKY
                     MKKQGM"
BASE COUNT          858 a          566 c          459 g          925 t
ORIGIN      
        1 gcactgttac cattaattgt tattctgaat tcctcacccc acgagctaaa agaagttttg
       61 gtataggcta taaatccatt ttcagttatc tggctaatat tccatcctat ctttttgaca
      121 gtttcaactg agattatcaa aaattgttca gcagtaattt ctcccgggtt tagttcccgc
      181 ttaaatttgg gtgtaagtcc aaaggccata aaataatttg ttataaagtg tgttaatctt
      241 ctatttgcgg acagccagtg ggtttcccct atctagcaaa cctattttga ttaaatttac
      301 cgttaatgca attatcaaaa acctgagttt gttttatttc cgatacatta accaggcacg
      361 aaaaaactca acgtacacag agattctaag caaacaatag ttatttcttt gttttctttc
      421 gaatcaattc tatcagatat tttgcttctg cttcatctac cgctaaacca aacgaatatg
      481 tttttaatcc ataatcaact ctgattggcc caatccccag tcctatagtc gacaggctgt
      541 tgtttttttc aaaagacata ttcgtatcaa catattcata tctgatattt tgaacatcag
      601 ctatggctaa tcgtttttta gttcctaatc ctaaaattga tttctcaatt acaaaatact
      661 cataatcaat ttgaataatt tctttaccta acaaactcca gattaaaaag aaaacagccg
      721 aaaggccacc tgcagtccac ccaatcaacc aaatggtaga aaaagcatca acaccaaaac
      781 cttctactga tcctgtgatc cccataaacc agccagtcat ccatattgct ataaatacaa
      841 caacaaacca gtttttcttc gttggaattt caattcgtaa ttcattaaat gtatcgtcaa
      901 ttttagcttt accgttgttt aacatgtcgt taatttttaa ttctgttcta attctgcaaa
      961 acttatttta tatcaggttg aaacagtaga tttaaaactt actgtatttt attgcctgtc
     1021 agtgttgaat tttccttctg gtaaatatat aaaatcagga aagcacagat gcctacaagc
     1081 ggataaaaca atcccattac aggaaccaac caaaattgaa tcctgtattt ccggatatca
     1141 ataatgagta gtatacaaac caatacctga acaaagtaaa ccacgtaatt aggtattgcc
     1201 cgccatattt catagtaatt atactgattt ggcggaaaca aaagcatttg caggtaaacc
     1261 caggaatgtc ctatcagtgc cgaaaacgcc agaataagac cgtactttgt aataagttta
     1321 tgaattggtt ccatacttta tgttggtgga tttataatta gatgcgaaaa gcaaaataag
     1381 gtagaataat acgccggcag tactatagaa aaaagtgaca atgagcaccg gaaccgaccg
     1441 ttggccggtt tgcttcatat ctttgtttat caaatatata aaaatcagat tggtcagata
     1501 ctccaaagcc acaattaaat agtttgacga tacggttctg aatgaatggt ccgggaaatg
     1561 tatggtcagc aaatccggaa aaaccatcag aactataaat acgataagcc tgatgccaat
     1621 gtaaaaaccg gtcatcagga aaaaatattt cctgagttgt tttttgaata tctccacgtt
     1681 catgcttata tctttatgct gcagcagtgc cggtaattta tcatgtatta attctattat
     1741 tttttcagta aagacagttc gcaacctgtc cctacgtttc atcccctaca ttccctgttt
     1801 tttcatatac ttgtcgtatt cagccttatt cattttccga tgagttatca caggtttatt
     1861 taccggaata ttataggttg cggattctat catattgctg tggggaatat attccaaccc
     1921 tttgtttact attttttgtg ccattgcccg gttattgaag cgcacataat accgggcata
     1981 ctcgtaatag gcattttcaa tctttacttt gaagtctgta tttggcaagg gtaatttaaa
     2041 tccggactcg aacagtgata agtattgaac gccctctttg ggtttgttgc gcataaaaaa
     2101 ctctttggca atatcgaggt atagaagcaa tttaatattt ttcattacat ccgatacatt
     2161 tgtattattc agctgtattt catagcgatt gagtgtatcc aacagcgctc ttttgtcatc
     2221 ataacgatac tgcatattac ttaaagtcga ctctattacg ttgagagcaa atttatcgtt
     2281 tggccgcagc ttaagagcct gaaaggcagg ttccagccct ccctgtgcaa accggtggct
     2341 atatgcaagt cccagataat agacatagct tatttcatcc gccagcatta catcatttat
     2401 ttgcggcagc aaccggttgt aagctgctgt gcaaaacgcc atatcatttt tatcaattcc
     2461 tcttcccaga atattatgaa aagatttccg gatattgtcg tagttgtttg catcgaatct
     2521 tgatatctgc ccgagaatat caacgtcctc tattttgtcg aatttacatt cattcatccg
     2581 atctgttaac atccggtaca tggagttgat aaatgtttca tccggataca ggtaacaagc
     2641 cttgctgata agccggtaag cttcctcgtt ttgcctggca ttaagttgtt gtatggcttt
     2701 gtaaaaataa atggtagccc cgagctgatt gcttttcaac acatccgact ctttgaagcg
     2761 gacaaccgaa taacctcccg aggaattata ctgatattcc gaccctat
//
LOCUS       DATDNM010000831         5383 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1914928, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000831 DATDNM010000000
VERSION     DATDNM010000831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5383
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1914928"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VI413_13895"
     CDS             <1..212
                     /locus_tag="VI413_13895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915764.1"
                     /translation="YGFTAKTQSQLNELIRIAPAVSYNLPNLKFALEYDYTTAVYGTL
                     QNDGLVNTPTRATNHRVLASVSYIF"
     gene            292..654
                     /locus_tag="VI413_13900"
     CDS             292..654
                     /locus_tag="VI413_13900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HEY6915765.1"
                     /translation="MIKGLFFILLFYFLGQMLSLLIHGFIPGSVLGMILLFLSLFFKI
                     IKPENVKDTATVITKNMAVFFVPAAVGLMAYGELLSNSLVAILLAIGISTVLTIITVA
                     LIQERFEKRRTKGENRHE"
     gene            647..1357
                     /locus_tag="VI413_13905"
     CDS             647..1357
                     /locus_tag="VI413_13905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HEY6915766.1"
                     /translation="MNNLLQQIKPFISTEVFLLALVMGTFLLGVYLYKRTKITLIQPL
                     LIAMLIIIPFLKITGIDYHTFCEKTRILNFMLGPSVVALGYILYEQIENIKGNVISIL
                     TAVFVGSVVGILSVVLIAKAFGADKMLVASLAPKSVTTPIAISLAEKDGGVPALAAAF
                     VVICGIFGGLVGPIILRRIGIKSKIAKGLAMGSASHALGTARAMEMGALEGAISGLAI
                     GIMGIMTALLIPFAERLF"
     gene            complement(1679..2938)
                     /locus_tag="VI413_13910"
     CDS             complement(1679..2938)
                     /locus_tag="VI413_13910"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015547392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEY6915767.1"
                     /translation="MKVYKFGGASVRSAEGIRNIARIVSEVSDNLFIVVSAMGKTTNA
                     MEVVLDCFMKADHAGAIEKLVEVENYHREIIAELFADKMVGENAVEPLFTELEKQIIE
                     GVGDDYDRWYDRLVSYGELISTKIVSAFLAESGSANTWLDMRGLIVTDSNFREANVHM
                     QESQLRLKKAADYKQNRIYIGQGFIGANIKGDPTTLGREGSDYTAAVVGNLLDAESVT
                     IWKDVPGILNADPRIFEGTVHIPELTYLDAVELAYSGAQIIHPKTIKPLENKHIPLYV
                     RPFGSPEEAGSVIKATTEKPIDVPVLILRKNQVLVTIRPRDFSFVLEESLSKAFSVMN
                     KHRLKIALIQSSAVSISVCVDNSRYLTGALDELGNDFKVTYNDALELLTIRGTNDEIV
                     QKYTTGRTLLLSQRTRRIGRFLMREKE"
     gene            complement(3018..4265)
                     /locus_tag="VI413_13915"
     CDS             complement(3018..4265)
                     /locus_tag="VI413_13915"
                     /inference="COORDINATES: protein motif:HMM:NF028426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5103 domain-containing protein"
                     /protein_id="HEY6915768.1"
                     /translation="MRKIILILLVLGCAALQAQQVYRTQIFQPNIKTLQIGIQNEKFL
                     LPVLELNASDRLHIRFDEMSHESHSYSYKVLHCNADWTPSSISTNEYISGFTTGAITD
                     YVTSLNTTFLYTHYSFNLPNDDMSFKISGNYVVVIYEDNQQDKPIAQACFSIVEPHVN
                     VSATVRGNTDTELNGKLQQLDFEVQMTGYTVRDPATEIKVVVRQNNRFDNEVSDLKPT
                     FMSANKLSFINNRALIFDGGSEYHRFDISNVYAAGEGVATIKYEQPHYDAYLYDNKIQ
                     AGKAYIQDLDVNGKYVINMQNASDDNTEADYMLVHFNLPTPEPFFDGQLYLGGEFNYN
                     LMNDVNRLKYDANSGSYYQTVLLKQGGYNYQYWFVPKGERKATTRRVDGSYWQTRNEY
                     TIYVYHRPWGERYDKLVGVKGIE"
     gene            4502..4798
                     /locus_tag="VI413_13920"
     CDS             4502..4798
                     /locus_tag="VI413_13920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915769.1"
                     /translation="MAKEDYISAKENYILSEKDYISAKKINVLAKKDYISGTKINVSA
                     KKDYISGTKINVSAKKDYISGTKINVSAKKDYILAEKDYISAEKIYLFSRPAKW"
     gene            complement(4876..5019)
                     /locus_tag="VI413_13925"
     CDS             complement(4876..5019)
                     /locus_tag="VI413_13925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915770.1"
                     /translation="MRGGENCKRREKSALATGNVERGGTGVCVLVRTVMPSRVQSTSD
                     GGM"
BASE COUNT         1623 a         1161 c         1035 g         1564 t
ORIGIN      
        1 gttacggatt cactgccaaa acacaatcgc aattaaacga actgattcgt attgcccctg
       61 cggtaagtta taatctgccc aacctgaaat ttgcactgga atatgattat accactgctg
      121 tttacggaac actgcaaaac gatgggttag taaacacacc aacccgggca accaaccacc
      181 gcgtattggc ttcagtaagc tatattttct aaatataaag agtaagccgg aagacaatat
      241 cgtctttcgg tttacccttt attgatctac ttgtttacaa atttcctccc catgattaaa
      301 ggcttgttct tcattctcct cttctatttt ctggggcaaa tgctcagcct gctcattcac
      361 ggcttcattc caggaagcgt gctgggtatg attttgctct tcctgagttt attcttcaaa
      421 ataatcaaac ctgaaaatgt aaaagataca gccacggtca ttaccaaaaa tatggctgta
      481 ttctttgttc ccgcagctgt aggattaatg gcctacggcg aattattatc caattcactg
      541 gtagctattt tgctggctat tggcattagc acggtgctaa ccattataac cgtggcactg
      601 attcaggaac gatttgaaaa acgccgcacg aaaggagaaa accgccatga ataacctgtt
      661 gcaacaaatc aaacctttta tcagcactga agtgtttctg cttgctctgg ttatgggaac
      721 gtttttattg ggcgtctacc tgtataaacg aaccaaaatc acccttatcc aacctttgct
      781 cattgccatg ctgattatca tcccgtttct aaaaataacc ggcatcgact atcatacttt
      841 ttgcgaaaaa acacgtatcc tcaactttat gctcgggccc agtgtggtag cgttgggcta
      901 tattttgtat gagcaaattg aaaacatcaa aggaaacgta atctccatcc tgacagctgt
      961 ttttgtgggc agcgttgtgg gtatcctgag cgtggtgctt attgccaaag cattcggtgc
     1021 cgataaaatg ttagtagctt cactggcccc taaatccgtc acaacgccaa tcgccattag
     1081 tctggccgaa aaagatggcg gcgttccggc actggcagca gcatttgtgg tgatttgcgg
     1141 tattttcggc ggattggttg gcccaatcat tctacgccga attggcatta agagtaaaat
     1201 tgccaaaggc ttggccatgg gatccgcttc gcatgcactg ggtactgcac gggccatgga
     1261 aatgggagct ctggaaggtg ccatcagcgg actcgccatt ggcattatgg gaattatgac
     1321 agcgctgctc attccttttg ccgaaaggtt attctaaacc aaaccggtag actcgcttcc
     1381 ttgctttaat ctaatgtttt tatagtatga attgaagtaa aagaaagtgg gtcatgcgaa
     1441 ccagcggtca gtacttaaag aagtagttca aaatcgcggt caaaataatc aattttcgcg
     1501 atttggaaat cgcgagaccc ggttcgaata ctctatcgaa tactctatgc tatttattac
     1561 aacacctcac ggataatcat ctaatcaaaa aaatattatt aagtaaagcc tataaaaaaa
     1621 tacggaatga ctacttaaag ccattccgca attaattcag gaattcccct actctttctt
     1681 actctttctc ccgcattaaa aagcgtccta ttctgcgtgt acgctggcta agtaaaagag
     1741 tccgcccggt tgtatatttc tgtactattt cgtcattagt gccgcggata gtaagcaatt
     1801 ccaacgcatc gttgtatgtt actttaaaat cattacccaa ttcgtccagt gccccggtga
     1861 gataacggct gttatctacg caaacagaaa tactgacagc ggagctttgt atcaacgcta
     1921 ttttcaagcg atgtttgttc attaccgaaa aggctttgga aagactttcc tccaatacaa
     1981 acgagaaatc gcgcggacga atagttacca atacctggtt tttgcgcaaa ataagcacag
     2041 gaacatcaat tggcttttca gtggtagctt tgataaccga gccagcttct tcagggcttc
     2101 caaacggacg cacataaagc ggaatatgtt tattttcgag cggcttgatt gttttcgggt
     2161 gaataatctg cgcaccactg taagccaatt ccactgcatc cagataagtc agttcgggaa
     2221 tatggacagt tccttcgaaa atacgcggat cagcattcag aattcccgga acatctttcc
     2281 aaatagttac actttcggca tccaagaggt ttccgacaac tgctgccgta tagtcagaac
     2341 cttcacggcc aagtgtggta gggtcgcctt tgatattggc accaataaat ccctgcccga
     2401 tataaatccg gttctgtttg taatcggctg ctttcttcaa acgaagctgc gactcctgca
     2461 tatgcacatt ggcttcgcgg aagttactgt cggtaacaat taatccacgc atatccagcc
     2521 aggtgtttgc actccccgac tcagccagaa aagcagaaac aatctttgtt gaaatcaatt
     2581 cgccatacga caccagacgg tcgtaccaac ggtcgtaatc atcgccaaca ccttctatta
     2641 tctgcttttc caattcggta aacaaaggtt caacagcatt ctctcccacc attttgtcgg
     2701 caaacagctc tgcaataatt tcgcggtgat agttttccac ttcaaccagc ttttcgattg
     2761 ctccggcatg atcggccttc ataaaacagt ccagcactac ttccatagca ttggttgttt
     2821 tgcccatggc cgaaaccacg ataaacaaat tatcacttac ctccgataca atacgggcga
     2881 tattacgaat tccttctgcc gagcgcaccg acgcaccacc gaatttataa accttcattt
     2941 tttatactaa tttttacgaa ttaaatcaaa ttataccaat ttgcataaac acatcatcac
     3001 atcaacacat caactaatca ctcaatcccc tttactccca ccagtttatc gtacctttcg
     3061 ccccacggac gatgatatac ataaatggta tattcattgc gggtttgcca atagctgcca
     3121 tccactctgc gggtggttgc tttgcgttcg cctttgggca caaaccagta ttggtaattg
     3181 taaccgcctt gttttaataa aaccgtttga taataagagc cggaattagc atcgtatttc
     3241 aagcggttta catcgttcat taaattataa ttaaactcac caccgaggta taactggccg
     3301 tcgaaaaacg gttccggtgt tggcaggttg aaatgaacca gcatataatc cgcttcggta
     3361 ttatcgtcgc tggcattctg catatttatt acatattttc catttacatc caaatcctgt
     3421 atataagcct tgccggcctg aatcttgtta tcataaaggt acgcgtcgta atgcggctgc
     3481 tcatacttga tagtagccac tccttcgccg gctgcataaa cattcgaaat atcaaagcgg
     3541 tggtattcac ttccaccatc aaatatcaga gccctgttgt tgataaagct caatttattg
     3601 gccgacataa aagttggttt cagatcggat acttcgttat caaaccggtt attctgacgc
     3661 accaccactt taatttcggt agccggatcg cgtaccgtgt aaccggtcat ttgcacctca
     3721 aaatcaagtt gctgcaattt gccattcagc tccgtatcgg tatttccacg cacggtggca
     3781 ctgacattta catgcggctc cacaatggaa aaacaagcct gggcaatggg tttatcctgc
     3841 tgattatctt cgtatattac aaccacataa tttcccgaaa ttttgaaact catatcgtcg
     3901 tttggcaaat tgaacgaata atgggtataa aggaaagtag tgttgagcga tgtcacgtaa
     3961 tcggttatcg ccccggtggt aaaaccgctg atatactcgt tggtagaaat ggaagatggc
     4021 gtccagtcgg cattgcaatg cagcacttta taactgtatg aatgtgattc gtgcgacatt
     4081 tcgtcgaaac ggatatgcaa tctgtccgag gcattcagtt caagaaccgg caacaggaat
     4141 ttttcattct gaatgccaat ttgcagggtt ttaatgtttg gttggaatat ctgcgtgcga
     4201 taaacctgtt gggcttgtaa agccgcacaa cccagaacca atagaatcag aattattttt
     4261 ctcatacaat acgtgtttgt tgtggcaaaa agcagctata catgtagcat acagccggtt
     4321 caagactgct ttcgcaactc aattatcctg ccacaaaaat aagaaattta aaggaataaa
     4381 cgatgtacgt tgaattttat tctttccctg cacagtttat tgaatagacc tatcctttct
     4441 gacacctttt attgaataga ccctgaatag acgcaatgta ttaatagcac aagattatat
     4501 attggcaaag gaagattata tatctgcaaa ggaaaattat atattgtcag agaaagatta
     4561 tatatcggca aagaaaatta atgtattggc aaagaaagat tatatatcag gaacgaaaat
     4621 taatgtatca gcaaagaaag attatatatc aggaacgaaa attaatgtat cggcaaagaa
     4681 agattatata tcaggaacga aaattaatgt atcagcaaag aaagattata tattggcaga
     4741 gaaagattat atatcggcag agaaaattta tttattttcc agacctgcga aatggtaagg
     4801 cgctaataag tattgagctt aaaataagca atttaaaact aaaataatta caactaaaat
     4861 ttaaaacaat ccaaattaca ttcctccatc cgatgtcgac tgtacgcggc tgggcattac
     4921 agtacgaacc aacacacata cgccggtgcc tcctcgttct acgtttccgg tggctagtgc
     4981 cgatttctcc ctgcgtttgc agttttctcc cccgcgcaca agagtaaaag aataagttcg
     5041 ataaatttaa attaaataaa taatgcgttg ttaatgtgga gaatagtatt tatctttgga
     5101 ttttaattta attgaaaaaa taatcgtttt tttatctggt gcgaaagaga aatacttatt
     5161 ggttagaaat atataagagc acctgtgcta aatgcattat taattcataa gacgtaaata
     5221 tatagatgtg tataaataaa caagccctat aataaagttt atataagatc acctagatga
     5281 cgatataaat tgttatgtgt aagcgtaaaa aataaaacag agcagaagat aatatggaca
     5341 gcatacttga aaaatctcgc agtattgaca agaattacag tga
//
LOCUS       DATDNM010000832         5429 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1166455, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000832 DATDNM010000000
VERSION     DATDNM010000832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5429
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1166455"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..722)
                     /locus_tag="VI413_13930"
     CDS             complement(<1..722)
                     /locus_tag="VI413_13930"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEY6915771.1"
                     /translation="MKTKNINMENARILLRKYFLMMFALIGLMTSCNTDDIKNENYYT
                     FTGETVASFCKSKDNLSIFYRIINESKSYNMLSIYGHFTCFAPTDSAFNAYFAANNIK
                     YSDLTTEDKQTIINNHIIRNEAKEYLTSDFEEGALPTPNMSDRFLVISYSNAIPGHQV
                     ILVNKSAPILVKDNKVHNGVVHIVGKIVEPSEDNLLSVMKGQDYFKLFSQAFELTNLS
                     DSVKGIYDYSYKDPSPGADRTNV"
     gene            complement(732..2300)
                     /locus_tag="VI413_13935"
     CDS             complement(732..2300)
                     /locus_tag="VI413_13935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008626511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6915772.1"
                     /translation="MKIKYIRTVISLIVLSLSLSGCGEWFDLRPQSETVHEEYWKDEN
                     DVKSMVGACYREMNEPAFIERLIVWGEVRSDNVLKGMNTSGDMTYIMNLALNASNSYT
                     SWNDFYKVINYCNNVIYYAPGVRQTDPNFTEGQLRAYIAEAKGIRALCYFTLVRTFHD
                     IPFITKPTVGDAQSFEVPQSTPEYIVDYLIQDLKDSENSAVSGYENKQYDKGRITQKS
                     IRALIADMYLWKNDYNNCVAYCNKILNDQTTGLVLEPSSVYNKNVFVEGNSKESIFEL
                     QFDSKNISNYVAYEMYNASSFGSRPGYNTYQLSSYDFANKTSLFGKTDLRGKDAFLPI
                     STGAFFPIMKYVALRTENPTGTISVNDYQISVTSPNWIFYRLSDIYLMKAEALVELGD
                     QASLEEAFNMVSKTYDRANPDLGAGSLQFSSYNTQLLMRNLVFDERQREFLFEGKRYY
                     DLLRRINREGTPANVVGTYLMKKYTVLDQATAQSRLSDINALYMPINANELKLNSLLV
                     QNPFYTISSDIDKN"
     gene            complement(2319..>5429)
                     /locus_tag="VI413_13940"
     CDS             complement(2319..>5429)
                     /locus_tag="VI413_13940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008618251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6915773.1"
                     /translation="NNPANSLKITYVGYKMVVLPIGSKTRFEVKIEENTQITEVVVAA
                     KKMYSDGTFAIPQREISGAVQKINTKEFEGLSVSSIDDALQGRIAGLDIVGNSGNLGS
                     GSTLRIRGTSSINSNAEPLIVVNDVPFENNISTSFDYTTANQEQFANLLNISPDDIEE
                     ILVLKDGASAAIWGSRGANGVISIRTKKGIKGPTRVQYSYRFSGKTQPAGLEMLSGND
                     YTMMMKQAYFNSYQNEADANKPEFNYNPSFSEYENFNNNTNWVKAITQYGQTHDHNLT
                     LSGGEDKIRFRMSLGYYDESGTIIQQNLRRLTGRTNLEYQVSDRIKFTTDFSITQTNN
                     HKNLAYDVGDSYNTENLLSMAYRKMPNVSIYEQDQFGNNTSNFYRIPQSSTLDASQRD
                     LLNPVALAYLGKNNEKNLRIIPTFRLQYDILDPNVTTLRYNGYVSFDVDNQGISRFLP
                     REVTSKNWDDETVNRSYGKDAESMSIYADQNLTWVPKIGENHDLMLYASWQLSTVNSR
                     SQEFEEYGLASSVITDPTVPGNERSFRNGFGQRRTMGLLGRVHYTYLSRYILDLSLRR
                     DADTRFGSNNRWGNFPATSIKWILSDEDFMKPTKSWLSELGIRAGYGVVGNTPNRDYL
                     YYSRYDGDWGSYGNNYIDISTVKPTSVMLANLKWEKSTSNNIGFDMSLFDYKCNIDFN
                     VYKKRTEDLLFENQSIPGSSGFSSLDYINAGVMDNTGWEFNFSTNKLFKTKDWTFDVN
                     LNLSNYINEIVSLSQTFLNAYNSNFSYTNGTYLSRLQEGNALGSIYGFRYKGVYQYDK
                     YVAGREGTSPVARNAAGDVITDSKGNPFPMHFAYGTTSSYVFRGGDAIYEDINHDGSI
                     DELDIVYLGNSNPKVNGGFGATIKYKNFSVNTFFNFRYGNKILNKARMDAENMMSNNN
                     QSVAVNWRWRKDGDVTGIPRALYNYGFNSLGSDRYVEDGSFLRLKYLTFSYELEKKLL
                     KELRLNQMNFYLTLNNLVTFSKYTGVDPEVSINMNPGYGLLGVSTDSNKTPRAQYFTL
                     GVTVVL"
BASE COUNT         1593 a         1160 c          984 g         1692 t
ORIGIN      
        1 acattcgttc tatcggcacc cggactcgga tccttatacg aataatcata aattcctttt
       61 actgaatcgg acaaattcgt gagttcaaat gcttgagaaa acagtttaaa atagtcctgt
      121 cctttcatta cggaaagcaa attgtcttcc gaaggttcca caattttacc tacaatatgc
      181 actactccat tatgcacttt attgtctttc actaaaatcg gtgcactttt attcaccaga
      241 atgacctgat gacccggtat ggcattggaa tacgaaataa ccagaaaacg gtcgctcata
      301 tttggcgtag gcaatgctcc ctcttcgaaa tcgctcgtca ggtattcctt cgcttcattt
      361 cgaataatgt gattgtttat aatcgtctgt ttatcttcag tcgtcaaatc gctgtacttg
      421 atattatttg cagcaaagta tgcattaaat gccgaatctg taggtgcaaa acaggtaaaa
      481 tgaccataaa tcgacaacat gttatagctt ttcgactcgt ttataatacg atagaaaata
      541 gacagattat ccttgctttt gcaaaaagaa gcaacagtct ctccggtaaa cgtataataa
      601 ttttcatttt taatatcatc ggtgttgcaa gaagtcatca gcccaatgag agcaaacatc
      661 atgagaaagt attttctcaa taaaatgcgg gcattttcca tatttatatt ttttgttttc
      721 atggttattt cttagttttt atcaatgtcg gatgatatgg tataaaaagg attttgaacc
      781 aacaaagaat ttaatttcag ctcattagca ttaatcggca tataaagggc atttatatcg
      841 ctgagccggc tctgagctgt agcctgatcc aaaacggtat atttcttcat caggtaagtt
      901 ccgaccacat ttgcaggtgt tccttcccgg ttaattctcc ggagtaaatc ataatatctt
      961 tttccttcga ataaaaattc ccgctgacgc tcgtcaaaaa ccagatttcg catcaacaat
     1021 tgtgtattgt aggaagaaaa ttgcaaagaa cctgcaccta aatcgggatt agcccggtca
     1081 taagttttcg acaccatatt aaacgcttct tccagacttg cctgatcgcc taattcgacc
     1141 aatgcttcgg ccttcatcaa gtagatatca gacaatctgt agaaaatcca gttgggactt
     1201 gttaccgaaa tttgatagtc atttacgcta attgtaccgg ttgggttttc agtccgcaaa
     1261 gcaacatatt tcattattgg aaaaaaagct ccggttgata ttggtaaaaa ggcatctttc
     1321 ccacgcaaat ctgttttacc gaacaaactc gttttattcg caaaatcgta ggaagaaagt
     1381 tgatatgtat tgtagcccgg acgactaccg aaagaagaag cgttatacat ttcatatgca
     1441 acataattgc tgatattttt gctatcgaac tgcaattcaa aaatactttc ttttgagtta
     1501 ccctcaacga aaacgttttt attgtaaacc gacgatggct ccaaaaccaa tcctgttgtc
     1561 tggtcattca aaatcttgtt gcaatacgca acacaattgt tataatcgtt tttccagaga
     1621 tacatatcgg ctatgagcgc ccggatagac ttttgggtaa tgcgtccttt gtcatattgt
     1681 ttgttttcat aacccgaaac agcactattt tcgctgtctt tcaaatcctg aatcagataa
     1741 tccacaatat attccggagt agattgaggt acttcaaatg attgcgcatc gccaactgtt
     1801 ggtttggtga taaacggaat atcatgaaaa gtacgaacca gcgtaaagta acacaaagcg
     1861 cgtattccct ttgcctcggc aatgtatgcc ctgagttggc cttctgtaaa attcgggtca
     1921 gtttggcgaa cgccgggtgc atagtaaatc acattattac aatagtttat tactttataa
     1981 aaatcattcc acgatgtata tgaattggat gcatttaaag ccaggttcat aatataggtc
     2041 atgtcgcctg acgtgttcat cccttttaaa acattatcag aacgaacttc accccaaaca
     2101 attaatcgtt cgatgaaagc aggttcgttc atttcacgat agcaggcacc aaccatactc
     2161 ttcacatcgt tttcatcttt ccagtattct tcgtgaaccg tttccgactg cggacgcaaa
     2221 tcaaaccatt ctccgcagcc tgacaacgaa agcgaaagaa caatgagact aattacggta
     2281 cgtatatatt taattttcat attattacgt tttattattt acaaaaccac tgtaactcca
     2341 agtgtaaagt attgggcacg tggcgtttta ttgctgtctg tgctcacccc gagaagtcca
     2401 tagcccggat tcatattgat tgacacttcc ggatctacac ctgtatattt gctaaatgta
     2461 accaaattat taagtgtcag ataaaaattc atttgattca accgaagttc cttcaacaat
     2521 tttttctcaa gttcgtaaga aaatgtcaaa tacttcagtc gcaggaacga tccatcttct
     2581 acgtacctgt cacttccaag gctattaaat ccgtagttgt ataatgcccg tggaattcct
     2641 gtaacatcgc catctttgcg ccagcgccag tttacagcaa cagactggtt attgtttgac
     2701 atcatattct cggcatccat gcgtgctttg ttaagaatct tattgccata ccggaagttg
     2761 aaaaaagtat tgacagagaa gttcttatac ttaattgttg ctccaaaacc accgttcact
     2821 tttgggttac tgttgccaag gtaaacaata tcaagttcat caatactacc atcatgattt
     2881 atatcttcat aaatagcatc accgcctctg aacacgtaac ttgatgttgt tccgtatgca
     2941 aaatgcatgg ggaacggatt tcctttactg tcggtaataa catcaccggc ggcatttctg
     3001 gccacaggac tggttccttc gcggcctgcc acatatttat cgtactgata aacacctttg
     3061 taacgaaaac catagatcga tcccaacgca ttaccttcct gaaggcggga taaatatgta
     3121 ccgtttgtgt agctgaagtt tgaattataa gcattcaaaa atgtttgcga tagcgaaacg
     3181 atttcattga tataatttga caggttcaaa tttacatcaa aagtccagtc tttggttttg
     3241 aataatttgt tggtggagaa attaaactcc caacctgtat tgtccatcac accggcattg
     3301 atataatcga gtgacgaaaa ccctgatgat cccggaatac tctgattttc aaacaacaaa
     3361 tcctctgtac gttttttata aacattaaag tcgatattgc atttataatc gaacaaactc
     3421 atgtcgaaac caatgttgtt ggacgttgac ttttcccatt tcaggttggc taacatcaca
     3481 gaagttggtt tcaccgttga aatatcgatg taattattgc cataacttcc ccagtcgcca
     3541 tcgtagcggc tgtaatacaa ataatccctg ttaggagtgt ttccgacaac accatatccg
     3601 gcccgaatac ccaactcgct caaccatgat ttggtaggtt tcataaaatc ttcgtcagat
     3661 aaaatccatt taatggatgt ggccggaaaa tttccccaac ggttgtttga tccaaaacgg
     3721 gtatcggcat cacggcgaag tgaaagatcc agaatatagc ggctcaaata cgtataatga
     3781 acccttccca acaatcccat ggtgcgtctc tgcccaaatc cgtttctgaa actcctttcg
     3841 tttccgggca ctgtaggatc ggtaattacc gacgatgcca atccgtattc ttcaaactcc
     3901 tggcttctgg aattaacggt ggaaagttgc caggacgcgt acaacatcaa atcatgattt
     3961 tcaccaattt taggcaccca tgtaaggttt tggtcggcat atattgacat cgattctgca
     4021 tcttttccgt acgaacggtt tacagtttca tcatcccagt tcttggacgt aacttcacgc
     4081 ggaagaaatc tggaaatccc ctggttgtca acgtcaaaag aaacataacc attgtaacgc
     4141 aacgtggtaa cattcgggtc caaaatatca tattgcaacc tgaatgtggg tatgatacga
     4201 agattctttt cgttgttctt acccagatat gccaacgcta caggatttag caagtcccgt
     4261 tgggatgcat caagtgttga tgattgaggg attctgtaaa aattactcgt attattacca
     4321 aactggtctt gttcataaat ggacacgtta ggcattttac gatacgccat actcaacagg
     4381 ttttcagtat tatatgaatc acccacatcg taagctaagt tcttatgatt gtttgtctgg
     4441 gtaatcgaaa aatctgtggt aaatttaatc cgatccgaaa cctggtattc aagattggta
     4501 cgaccggtaa gcctgcgtag attttgttgg ataattgttc ccgattcatc ataatatccc
     4561 aacgacatac ggaaacgtat tttatcttca ccgcccgaga gcgtcaggtt atgatcgtgc
     4621 gtttgaccat actgggttat tgctttaacc cagttcgtgt tattgttgaa attttcatac
     4681 tcagaaaacg aaggattata attaaattca ggcttattgg catcagcttc gttttgatac
     4741 gaattgaaat acgcctgttt catcatcatc gtgtagtcgt ttccactcaa catttccaaa
     4801 ccggctggtt gtgtttttcc cgaaaaacgg tacgaatact gaacgcgggt cgggcctttg
     4861 attcctttct ttgttctgat ggaaataact ccattagcac ctctcgatcc ccagattgca
     4921 gccgaagcac cgtctttcag cacaaggatt tcttcgatat catccggact tatattcaac
     4981 aggttcgcaa actgttcctg attagctgtg gtgtaatcaa aagaagtgct gatattattc
     5041 tcaaaaggaa catcattcac aacgatcaac ggttctgcat tcgaattgat tgatgatgtt
     5101 ccccgaattc tcaacgtaga accggaacct aagttacctg aattcccaac aatatcaagc
     5161 ccggcaatgc ggccctgaag cgcatcatca atggatgaca cagaaagtcc ttcaaattct
     5221 tttgtattta ttttttgtac agcacctgaa atttcgcgtt gcggaatagc aaatgttcca
     5281 tcggaataca tctttttagc cgcaacgaca acttcagtaa tttgggtatt ttcttcaatt
     5341 tttacttcaa atctggtttt actgccaatc ggaaggacaa ccattttata acccacatac
     5401 gtaattttca acgaattggc aggattgtt
//
LOCUS       DATDNM010000833         2547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2128742, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000833 DATDNM010000000
VERSION     DATDNM010000833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2547
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2128742"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..>2547
                     /locus_tag="VI413_13945"
     CDS             171..>2547
                     /locus_tag="VI413_13945"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915774.1"
                     /translation="MLQKSNAQEKTFGYVKIGGGGYICSVIESSTEENVFYAKSDVGG
                     IYRWNETTQDWTPLFAWVSPDETTYMGTEAFVVDPKAPNRLFSMAGTDYWNGGKSALL
                     RSFDYGKTWEVYETTSKFKVHGNGSDRQKGETLAIDPANGNVLYFGTRNSNGLFKSTD
                     AGKTWNKVTSFPDSIGTAASFSFVQFVDDSATPDGCSTIIVGSHKTGNNVFISEDFGA
                     TWTSIGGFSAAKPQRCALSLSDKNLYVTYANGASADGSGGVYKYNLTSKQWTNITPAT
                     NRGYSGISLIANDPQKITCSTYNFWGSSQPWGWGDEIYFSATGGSTGSWVRKNSSAGS
                     TMVTNGIDWMQNHSMHWVGCVTMSNTKPGVVYAVSGNGIFMTDNIMATKPIWKVASQG
                     LEETVLKNPGVLSIPNGPLITTIGDVNGFVHTDIDQYPKASISQSTSMAFAPQKTSTI
                     VRAVNKEKKVNNVSVYYNVVALSEDNGQTWTELPVLPVDISEAKTSISADGNRILWQA
                     YSSATGSVLYWTDNKGVTWNKTATMPTNAVPVPDGVDPLKFYLHNTTTGRIYRSDDGA
                     QTFSIISLVGSTGGSSVLKTIPGKAGHVWINNNGKVRYSTDQGQTFTTCSNYSCAAFS
                     LGKEAPGSDYPTVYIWGKPTSNLPEGMYRSIDKGKTWIRVNDDEHEWGHLANGGNIEA
                     DQNVYGRVYKSTAGMGIPWMGISPETGLPDNHEVRNSVISPNPFLNSITLHANGVNIK
                     SIDIYNLQGMQMQHIETDMYANESIEFGEELACGIYLVNVSDTKHTQTYKII"
BASE COUNT          825 a          450 c          577 g          695 t
ORIGIN      
        1 aaaataacgt ttacgaaaaa gtaatgcgtt tgttacttta aagtgaaata cagaaaaaga
       61 tataatctta tggcattagg aaaaattaaa tcatattgta caccgtgaaa gaactgaatt
      121 ttaattggaa atcacaaaaa attattgtgc ttttatttct cacaatattc ttgctgcaaa
      181 aaagtaatgc gcaggaaaaa acatttggct atgtgaaaat tggtggggga gggtatatct
      241 gctctgtcat tgaaagttca accgaagaaa atgtattcta cgcgaaaagc gacgtgggtg
      301 gaatttacag gtggaatgaa accacacaag attggacacc gctttttgca tgggtatcgc
      361 ccgatgaaac aacttatatg ggaacagagg cttttgtcgt tgatcctaaa gctccgaaca
      421 gacttttctc catggccgga accgactatt ggaacggtgg gaaaagcgct ttgttgaggt
      481 cgttcgacta cggaaaaacc tgggaagttt atgaaacaac ttcgaaattc aaggttcatg
      541 gaaacggttc tgatcgtcag aaaggagaaa ccttagccat tgaccctgca aatggaaatg
      601 tactttattt cggtacacgc aattcaaatg gcttgtttaa aagtaccgat gccggtaaaa
      661 catggaataa agtaaccagt tttcctgata gcattggcac agcagcatca tttagttttg
      721 ttcagtttgt tgacgattcg gcaactcctg acggttgctc aaccatcatt gttggtagtc
      781 ataaaaccgg aaataacgtt tttatcagcg aagattttgg cgcaacatgg acttcaatcg
      841 gaggatttag cgctgcaaaa cctcaacgtt gtgcattgtc gcttagtgat aaaaatttgt
      901 atgtaaccta tgctaatgga gcttcggccg atgggtctgg tggtgtttac aaatataatc
      961 tgacctccaa acaatggaca aatataacac ctgcaaccaa tagaggatac agtggtatca
     1021 gtttgattgc aaatgatcct caaaaaatca cttgctcaac ctataatttc tggggctcgt
     1081 cgcaaccctg gggttggggc gatgaaatat atttcagtgc aaccggaggt tcaaccggtt
     1141 cgtgggtgcg taaaaattca agtgccggta gcacaatggt tacaaacggt attgattgga
     1201 tgcaaaacca ctcgatgcac tgggttggct gtgttaccat gagtaatact aaaccgggtg
     1261 tggtttatgc tgtttccgga aacggcatat tcatgaccga taacattatg gcaacaaaac
     1321 caatatggaa agttgcttca cagggtttgg aagaaaccgt gctgaaaaat ccgggagtgc
     1381 tcagtattcc caacggacca cttattacta cgattggtga tgtaaacgga tttgtacaca
     1441 ctgatatcga ccaatatccg aaagcaagta tttcacaatc aaccagtatg gcttttgcac
     1501 ctcaaaaaac atccactatt gtaagggcag taaacaagga gaaaaaagtg aataatgtat
     1561 cggtgtatta taatgtggtt gctttaagtg aagataacgg acaaacatgg acagagttac
     1621 ccgtattgcc tgttgatatt tctgaagcta aaacttctat ctctgccgat ggaaacagaa
     1681 ttctttggca ggcatacagt tctgcaacag gaagcgtatt gtattggact gacaataaag
     1741 gggtaacctg gaataaaaca gccactatgc caacaaatgc tgttccggtg cccgatggcg
     1801 ttgatccgtt gaaattttat ttacataata ccacaacggg tagaatttac cgcagcgacg
     1861 atggggctca aacgttcagt ataatttcgt tggttggctc aaccggaggt tcgagtgtgt
     1921 tgaaaacaat acccggaaag gcgggacatg tatggattaa taataatgga aaggtgagat
     1981 acagcacaga tcaggggcaa acctttacaa cttgttcaaa ttactcctgt gccgcatttt
     2041 cgcttggaaa agaagctccg ggaagcgatt atccgactgt atatatttgg ggaaaaccaa
     2101 caagtaattt gcctgaggga atgtatcgtt caatcgacaa aggtaaaaca tggattagag
     2161 tcaatgatga tgagcacgaa tggggacatt tggctaacgg tggtaatatt gaagccgatc
     2221 aaaatgtgta tggtagagtg tataaaagta ctgccggtat gggaatacca tggatgggta
     2281 ttagtccgga aactggtttg cctgataatc atgaagttag aaactcagta attagtccta
     2341 atccattcct gaatagtata actctccacg ctaatggcgt aaatatcaaa tccatcgata
     2401 tttataatct tcagggtatg caaatgcaac atatagaaac cgatatgtat gcgaatgaaa
     2461 gtattgaatt tggtgaagag cttgcttgtg gaatatattt agtaaatgtt agtgacacaa
     2521 aacatactca aacatacaag attatca
//
LOCUS       DATDNM010000834         4712 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2022720, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000834 DATDNM010000000
VERSION     DATDNM010000834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4712
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2022720"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..627
                     /locus_tag="VI413_13950"
     CDS             <1..627
                     /locus_tag="VI413_13950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEY6915775.1"
                     /translation="KKNNLTLIDASCPVVLKLQSRIKNAYETSPTEDTQIVIYGHIGH
                     AEVNGLVGQTNEKAIVIESEDDLHKVDLSKPVRLFSQTTKSLEGFNQLVTTLSKKIEN
                     KANFEHTDTICRQVANRMPNITTFAQQNDIIIFVSGKKSSNGQVLYEHSKQINPNTYL
                     VSEANEVFDLKIDFNKEIGICGATSTPRWLMEEVAEKLEELATIQENK"
     gene            667..1650
                     /gene="pfkA"
                     /locus_tag="VI413_13955"
     CDS             667..1650
                     /gene="pfkA"
                     /locus_tag="VI413_13955"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEY6915776.1"
                     /translation="MKYEIKCIGVLTSGGDSPGMNAAVRSVTRAAIFNGIRVKAIYRG
                     YKGLITNEITEFQTQNVSNIIQQGGTILKSARCAEFRTPEGRRQAFENMQAAEIDALV
                     VIGGDGTFTGARIFAQEYNVPIVGLPGTIDNDLYGTDSTIGYDTALNTIVEAVDKIRD
                     TATSHERLFFIEVMGRDAGFLALNSALASGAEAAIIPERETQVDQLEELIKNGFRKSK
                     NSSIVIVAESEITGGATGLAERMHNEHPEYDVRVTILGHIQRGGSPSAFDRILASRMG
                     VAAIDALMDEQRSIMIGIVNDEIVHVPFTKAIKDDKPVNENLLGVISILSI"
     gene            1790..2251
                     /locus_tag="VI413_13960"
     CDS             1790..2251
                     /locus_tag="VI413_13960"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005928953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HEY6915777.1"
                     /translation="MTSILFVCLGNICRSPMAEGVFRKILEREKATERFEIDSAGLLG
                     YHQGELPDSRMRFFAGKRGYSLTHRSRQFKRADFDHFDLIIGMDDQNIAGLKQLAMTL
                     EEDAKIHRMTDFCRNIEATHVPDPYYGGDQGFENVIDLLEDACEGLFEKIG"
     gene            complement(2302..2652)
                     /locus_tag="VI413_13965"
     CDS             complement(2302..2652)
                     /locus_tag="VI413_13965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019538545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2200 domain-containing protein"
                     /protein_id="HEY6915778.1"
                     /translation="MNKTKIFAIPFATVYPLYIQKVEKKGRTKAEVDTVIFWLTGYNE
                     QVLQQQIDKNVDFETFFAEAPEMNPNVSKITGVICGYRVEEIEDKLMQQIRYMDKLVD
                     ELAKGKAMEKILRQ"
     gene            complement(2927..3634)
                     /locus_tag="VI413_13970"
     CDS             complement(2927..3634)
                     /locus_tag="VI413_13970"
                     /inference="COORDINATES: protein motif:HMM:NF017970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HEY6915779.1"
                     /translation="MKTFRSDISKTEFPISEKVSAKTIRHSILNLIQKDNPEFSHESY
                     LSRDELNNYREKAISDYLIKEVGELSELEKTVLTSVNNNSTLTDKITGDEKQTLTAGQ
                     RIADKVASFGGSWTFIISFGVFILIWISINVYWLANKGFDPYPFILLNLILSCLAALQ
                     APVIMMSQNRQEEKDRDRAKKDYMINLKSELEIRTLHEKIDHFIMDQQQELLELQKIQ
                     IDMMEDILKQIDKKSGK"
     gene            complement(3820..4374)
                     /locus_tag="VI413_13975"
     CDS             complement(3820..4374)
                     /locus_tag="VI413_13975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915780.1"
                     /translation="MRKSDIYEVTIKILGLYLVVTVIEHLREVITYATVLIQYNDKPE
                     QFGGFDQIPVLIVTLFNFLLLTTFTWLLIFKTRKLTSLICTKDDYSESTKLFADKRTI
                     VEIAIILVGLMTIIWTIPEFAIKLKNYVYMAQNSFTATMNDKTFLFIGGLKIVVGIIA
                     ISYAKSISSSVLKEKKEDNDKVVE"
BASE COUNT         1422 a          953 c          874 g         1463 t
ORIGIN      
        1 aaaaagaata atctgactct gattgatgct tcatgcccgg tggttttaaa attgcaatcg
       61 cggattaaaa atgcttacga aacttcgcca acagaagata cccagatcgt gatttacggt
      121 cacattggcc atgcagaagt aaatggattg gtaggtcaaa cgaatgaaaa agccattgtt
      181 attgaatccg aagacgattt gcataaagtg gatttatcaa aacctgtccg gttattctcc
      241 cagaccacaa aatcgttgga aggatttaac cagcttgtaa caaccttatc aaaaaaaata
      301 gaaaacaaag caaattttga acacactgac actatttgcc gccaggttgc aaacagaatg
      361 ccaaatatta ctacctttgc acaacaaaat gacattatta ttttcgtcag cggaaaaaaa
      421 agttcaaatg ggcaagtgtt gtatgaacac agcaaacaaa tcaatccgaa cacctatctg
      481 gtaagcgagg cgaatgaagt gttcgatttg aaaattgatt tcaacaaaga aattggtatt
      541 tgcggtgcaa cttccactcc acgttggtta atggaagaag ttgcggaaaa actggaagaa
      601 ctcgccacaa ttcaggaaaa caagtagaaa attagtttat tatactcaca tattttttaa
      661 ggtaaaatga aatacgaaat caaatgcatt ggtgtgctca catccggcgg tgattcgccg
      721 ggaatgaatg ctgcagtacg ctcggttaca cgtgccgcta tttttaacgg cattcgcgtg
      781 aaagccattt acagaggtta caaaggctta atcaccaacg aaattactga attccaaact
      841 caaaacgtaa gtaacattat tcaacaggga ggtacaattc tgaaaagtgc ccgctgtgct
      901 gaattccgga ctccggaagg acgtaggcaa gcttttgaaa acatgcaggc tgccgaaatt
      961 gatgcgcttg tagtaattgg aggggatgga acttttaccg gtgcacgtat ttttgcccag
     1021 gagtataatg tgccaattgt gggacttccc ggaacaattg acaacgacct ttacggaacc
     1081 gattcaacga ttggttacga cacggcattg aacactattg ttgaagctgt tgacaaaatc
     1141 cgcgacaccg ccacatcgca cgaacgcctg ttcttcattg aagtaatggg acgtgatgcc
     1201 ggtttcctgg cgttaaacag cgcgttggca tctggtgccg aagcagccat tattcctgaa
     1261 cgcgaaacgc aggttgacca attggaagaa ctgattaaaa acggtttccg caaatcgaaa
     1321 aacagtagca tcgttattgt tgccgagagc gaaattacag gcggtgcaac aggtttggcc
     1381 gaacgtatgc acaacgaaca tcctgaatat gatgtgcgtg taaccattct cggacatatc
     1441 cagcgcggag gttcaccttc tgctttcgat cgtattctgg caagccgcat gggagttgcc
     1501 gctatcgatg ccttaatgga tgaacaacgc agcattatga ttggaattgt aaacgacgaa
     1561 attgtacatg ttcctttcac caaagcaatt aaagacgaca aacctgtgaa tgaaaacctg
     1621 ttgggtgtga tttctatttt gtcaatctaa aattataaca accccataat cccctaaagg
     1681 ggacttttag aaccgtcatt taaatgagaa ttcgttcttt tttattgcaa aggtctcttt
     1741 aagtcccctt taggggattt aggggccact tttcaactat aaacgaccca tgacttccat
     1801 tctttttgtt tgcctcggca atatctgccg ttcccccatg gctgaaggtg ttttccgtaa
     1861 aattctggaa cgcgagaaag caactgagcg ttttgaaatt gattctgccg ggttacttgg
     1921 ttatcatcag ggagagttac ccgatagccg gatgcgtttc tttgccggaa aacggggcta
     1981 ctcgctcacc catcgttccc gacaatttaa gagagcagat tttgatcact ttgatctgat
     2041 tataggcatg gacgaccaga atatagccgg actgaaacaa ctggccatga ctttggaaga
     2101 agatgcaaaa attcaccgca tgactgattt ttgccgcaac atagaagcaa cacacgttcc
     2161 cgatccgtat tacggtggcg accagggctt cgaaaacgtc attgatttgc tggaagatgc
     2221 ctgcgaagga ttgtttgaaa aaatcgggtg aacggatttc taaatccgtt taacccacct
     2281 tcattatagt aagccggttt cttattgcct taaaatcttc tccatggcct ttccttttgc
     2341 cagttcgtca accagcttat ccatatagcg aatctgttgc ataagtttgt cttcgatttc
     2401 ctccacccga tagccacaaa ttacaccggt aattttcgaa acattgggat tcatttcagg
     2461 tgcctcggca aaaaaagttt caaaatcaac gttcttgtcg atttgttgct gcaatacttg
     2521 ctcattatat cctgtcagcc aaaaaataac agtatctact tctgctttag tgcgtccctt
     2581 tttctccact ttttgaatat aaagcggata gacagtcgca aaaggaattg caaatatttt
     2641 tgtcttattc attttagtaa ttgctatttg acaaaataga tttctttata tcagtaacaa
     2701 gtcagaacta ccgggagttt gattcaccca agaattattc cagcactttt gctcatttaa
     2761 tgattaatgt atatccccga aaacatgatc ctttgcatga gtttatcttt gatttcctcc
     2821 accctacatc cacaaatata agtgaagtgt attgcattat agctggttaa gtttaaacga
     2881 ttactaagga aacaaccatg tcaacaatag aatataccac aggacgttac tttccgcttt
     2941 tcttatcaat ttgctttaat atgtcctcca tcatatctat ttgaattttt tgtaactcca
     3001 atagttcttg ttgctggtcc ataataaaat ggtcaatttt ttcatggagc gttcttattt
     3061 ctaattctga tttaagattt atcatatagt ctttcttagc tctgtctcta tctttttctt
     3121 cctgcctatt ctgactcatc ataattaccg gcgcttgcaa agctgccaga caagacaaaa
     3181 taagattcaa cagtataaac ggataagggt caaatccttt attggcaagc caatagacat
     3241 tgatagaaat ccagatgaga ataaacaccc caaatgaaat aataaatgtc cagctgccac
     3301 caaatgatgc aaccttgtca gcaattcttt gtccggccgt taatgtttgt ttttcatcac
     3361 cggttatttt atcggttaaa gtactgttgt tattcactga agtcaacacc gtcttttcaa
     3421 gttcagacag ctctcctact tctttaatca gataatctga aatggctttt tcccgatagt
     3481 tgtttagttc gtcccgtgaa agataactct catgtgagaa ttcaggatta tctttttgaa
     3541 ttaaattcaa aatggaatgt ctgattgttt ttgccgaaac tttttcagat attggaaatt
     3601 ctgtctttga aatgtcgctg cgaaaagtct tcatgttata attctttatt ggttaaaatc
     3661 attattgata atcgagacta taagtatttg tccgccaccg ctccactgga tattttattt
     3721 gagggggcat tcaccagtcg tcgcccggca ataaagtgaa tgcggagcta aaccggccaa
     3781 atgcacagcc tttcttcttt ttccctgcta aaaattcaac tattcaacaa ctttatcatt
     3841 atcctctttt ttctctttta aaacagatga agagattgat tttgcgtacg atattgcgat
     3901 aattccaacc actattttta gtccgccaat gaataagaag gttttatcat tcattgttgc
     3961 cgtaaaacta ttttgagcca tgtaaacata gttctttaat ttaatcgcaa attcaggaat
     4021 agtccaaatg atagtcatta agccgaccag gataattgca atctcaacta tcgttctttt
     4081 gtctgcaaat aactttgttg actctgaata gtcgtcttta gtacatatta aactagtcag
     4141 tttcctcgtt ttgaagatta acaaccacgt aaatgttgtc agtaacagaa agttgaataa
     4201 tgtcactatc aaaaccggta tttggtcaaa tccaccaaat tgttccggtt tgtcattata
     4261 ttgaattaat actgtcgcat aagtaataac ttctcttaaa tgctcaatta cagtaactac
     4321 caaataaagt cctaagattt taatcgtaac ttcgtaaatg tctgattttc tcattgtttt
     4381 tatttttttg tttatagttt tagtcaacga ctcagactat attctttgcc cgcaaccgct
     4441 gcactggata tttcatttga gggagcattc accagtcgcc ctgcaacaaa gtgaaagcgg
     4501 gagctaaacc ggccaaatgc acagaaactg tctgaattaa aatttacaga attatagaat
     4561 tatcagaata tggatttcca gattgtaatt atctttttca attgacaaga tatttatttt
     4621 cttattctat gaattctgat tcagataact aattacacgt cagatagtcg atgcacgagg
     4681 cataccttaa agcctcgtgc attctttttc at
//
LOCUS       DATDNM010000835         2019 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1915224, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000835 DATDNM010000000
VERSION     DATDNM010000835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1915224"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..478
                     /locus_tag="VI413_13980"
     CDS             <1..478
                     /locus_tag="VI413_13980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915781.1"
                     /translation="AQKCRFKQDKKQKVRTYYPADLKQFRFTKQNRTFVKRQINKGNE
                     SDKYVFLEILVSGRINLYYLRDIHLINHYFIEKKGEITLADLPFTRQERYVDSGNSRK
                     LLTIDTTNHIDTLKKYMQDTPSLYPNIEDIQFPQRDKLIKLVKLYNSFFEEAVERK"
     gene            497..1603
                     /locus_tag="VI413_13985"
     CDS             497..1603
                     /locus_tag="VI413_13985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915782.1"
                     /translation="MIRKFSVILVFVLVVMLPLFAGLNFRPGYIVTNNGDTIKGFIDY
                     QPDYNLKDSCRFTTNISDSGKKYFPTELNGFHFDKESSSFVKATLPGDAIQLIFIEEL
                     TSGKLNLYVHADLKHGKTFYIRKANETSLVEVPYTIQTKKYYNGLVINSMVNGSTNHI
                     DTLKKYMADAKPLYRDIEVIEVPTKSKLVKLINEYNSFTDEKTYIAEHAIKRLPYNLY
                     ITPGLFFTSLRKYVLLGGSDVCIGFVNTNEHYFFRTGVFLSSTRDYEASSANNDYATH
                     MLFKVPLQFEYRFSEKLIQPRIAVGCNYYAGDSISVVRPGISAGINLKVSDRVSFTIM
                     PEVEFKGFQFVNPVLDWFSRYNNFSLFTGIQIKL"
BASE COUNT          678 a          283 c          370 g          688 t
ORIGIN      
        1 ggctcagaaa tgcaggttta aacaggacaa aaagcagaag gtaaggacat attatccagc
       61 agatttaaaa caattcagat ttacaaaaca aaaccgcacc tttgtgaaaa ggcaaattaa
      121 taaagggaat gaaagtgaca agtatgtttt tctggaaata ttagtatcag gtagaattaa
      181 tctttattat ttaagggata ttcatttgat aaatcattac tttattgaaa aaaaaggtga
      241 aataactctg gctgatttgc ctttcacacg tcaggaaaga tatgttgata gtggcaattc
      301 cagaaaatta ctgactattg acacgactaa tcatattgat acgttgaaaa aatacatgca
      361 ggatactcca tctttgtatc cgaatattga agacattcaa tttccgcaaa gggacaagct
      421 gattaagttg gtaaagcttt ataatagttt ttttgaagaa gcagttgaac gtaaatagta
      481 taaatacaag agttttatga tacgtaaatt ttctgtaata ctggtttttg tgctggtggt
      541 aatgctgcca ctttttgccg gtctaaattt taggccggga tatatcgtta caaataatgg
      601 cgatactatt aagggtttta ttgattatca gcctgattat aatttgaaag atagttgccg
      661 gtttacaaca aacatatctg attcaggtaa aaaatatttt cctacagaat taaacggatt
      721 tcattttgat aaagaatcca gcagctttgt aaaggcaact cttcccgggg atgccattca
      781 actaatattt attgaagagc tgacttcggg taaactcaat ttgtatgttc atgccgattt
      841 aaaacacggt aaaacctttt atatccggaa agcgaatgaa accagccttg ttgaagtccc
      901 atacacaata caaaccaaaa aatattataa tggtttggta ataaactcta tggtaaacgg
      961 gtctactaat cacattgata ccttgaaaaa atatatggcc gatgcaaagc cgctttaccg
     1021 tgacattgaa gttattgagg ttccaacaaa atcaaaactt gtaaaactga taaatgagta
     1081 taattcattt actgatgaaa aaacatatat agctgaacat gctattaaaa ggttgccata
     1141 taatttatat ataactcccg gcttgttttt tacgagtttg agaaaatatg tattacttgg
     1201 aggtagcgat gtatgtattg gatttgtcaa tactaatgaa cattattttt tcagaacagg
     1261 tgtttttctc tcgtctactc gtgattacga ggcaagttct gcaaacaacg attatgcaac
     1321 gcatatgctg ttcaaagttc ctctacagtt tgaataccgg ttctcggaga aactgatcca
     1381 gccacggatt gcagttggtt gtaattatta tgcgggtgat tcaataagtg ttgttcgtcc
     1441 gggcatatcg gctggaatta atttaaaagt atccgataga gtttcattta caattatgcc
     1501 tgaggttgaa tttaaaggat ttcagtttgt aaatcctgtt ttggattggt ttagcaggta
     1561 taataacttc agccttttta cagggataca aattaaatta taatggtttt atggctattt
     1621 atgaatgttt gaaataggtt ttgaagattc aaaacctgaa ccatttgact ttggatgcgt
     1681 ttagaaataa aaaatcagct aaaaaattgt tcttgtaatc agaagtgcac aggttttatt
     1741 atctttggat gccaaataaa aagaagtaag cccaatgatt tgtgttagat tacatattta
     1801 caaaggaata aattgataaa tctcctttat tttcgttaaa caaacagata gaattaattt
     1861 ctatctgttt gttttttagt tgtttggtga attgattata atcacttaac gttctttcgt
     1921 attatttgta gtcttacttt catttttagt gttaattttg tcgtcaatat atagaactaa
     1981 tggataaatt gcgttttcag agttttggta gtggtagca
//
LOCUS       DATDNM010000836         2082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_739171, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000836 DATDNM010000000
VERSION     DATDNM010000836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_739171"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..635
                     /locus_tag="VI413_13990"
     CDS             <1..635
                     /locus_tag="VI413_13990"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY6915783.1"
                     /translation="ELNSQLKSETATFSLRKLELEASRFESERIRKINQLQFNQAKID
                     YAKVQRQMKSNKIIRINDMKIQVLRANQLKTELKDAKAILPKLTIRTPISGIFQIGTN
                     WRTGGIIKIGDEVYPGNNMGNVPDLTWMKVNSSIGERDFLKIHKGQKVIVRLDALPKI
                     RFDGEVTYIGRLCHLKDEKSKQKVFDVEVKMLKSDERLKPGMTVSCEYIL"
     gene            644..1882
                     /locus_tag="VI413_13995"
     CDS             644..1882
                     /locus_tag="VI413_13995"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6915784.1"
                     /translation="MEYKENIRLAIRGLIDHKFRSFLTMLGIIFGVASVITMLSIGEG
                     AKREAIAKYQDLGVNNIIIRDKKMTDEELEEVRAKFSQGLSPEDASVIKEIVPGVVRT
                     ASQAEISSEAKYTDKSAKSMVIGITPDYAEMLNYKTARGKFITEDQSLKELKVCVLGA
                     GVAATLFRSEDPIGKMVKIEDQWMEVVGVLKSKALFTETVGELAARDLNMDVYVPLTT
                     FLGRFTHENQLTSEIQQITVQVDGSDKLEEASKVIDEILKRHHYNNEDYSIVVPFELL
                     QQEEKERQIYNFLLGAIAAISLLVGGIGIMNIMLATVMERTREIGIRRAIGARKSDIM
                     SQFVTEAVAISITGGIIGVVLGITLSLTVTLFTDITTYIQPYSIFIAFGFSVLVGISF
                     GYLPAKNAANLKPIDSIRYE"
BASE COUNT          689 a          364 c          477 g          552 t
ORIGIN      
        1 aagagcttaa ttcgcaattg aaaagtgaaa cggccacatt cagccttcgg aagctcgaat
       61 tggaagcatc tcgcttcgaa tcggaacgca tccgcaaaat taatcaactt caatttaatc
      121 aggcaaaaat tgattatgcc aaggtgcaac ggcaaatgaa atcgaataaa attatccgta
      181 taaatgacat gaaaattcag gttttgaggg caaaccaact gaaaacagaa ttgaaggatg
      241 caaaagcaat tttgccaaag ctaaccattc gcacaccgat ttcgggaatt ttccagattg
      301 gtacaaactg gcgtacgggt ggtataatca aaattggaga tgaggtttac ccggggaaca
      361 atatgggtaa tgtgccggat ttgacttgga tgaaggtaaa ttcatcaatt ggagaacgcg
      421 atttcctgaa gattcataaa ggtcaaaaag taattgttcg gttggatgcg cttccaaaaa
      481 taagatttga cggagaagta acttatattg gcagactctg ccatttgaaa gacgaaaagt
      541 cgaagcagaa agtatttgat gtggaagtaa aaatgttgaa atcggatgag cggttaaaac
      601 cgggcatgac agtaagttgt gaatacatac tttagaaact aatatggaat acaaagaaaa
      661 tatacgatta gccatcaggg gattaattga ccataaattc aggtcgtttc tcaccatgct
      721 cggaattatt tttggtgtgg cctcggttat caccatgctt tccattggcg aaggcgccaa
      781 gcgcgaagcc attgccaagt atcaggattt gggcgtaaat aatatcatta tccgggataa
      841 aaaaatgacg gatgaggaac tggaggaagt gcgcgccaag ttttcgcagg gcttgtcgcc
      901 ggaagatgct tctgtgatca aagaaattgt tccaggagta gtgcgcacag cctcacaagc
      961 cgaaatcagt tccgaagcca aatacaccga taaatcagct aaatcaatgg ttataggtat
     1021 cacgcccgac tatgccgaaa tgctgaacta taaaaccgct cgaggcaaat ttatcactga
     1081 agatcagtca ctgaaagaat tgaaagtttg tgtgctcggg gcaggagtag ctgctacact
     1141 tttcaggagc gaagacccga ttggtaaaat ggtcaaaatt gaagaccaat ggatggaggt
     1201 agttggcgtg ttaaaatcga aagccctttt tacggaaact gtgggcgaat tagctgcacg
     1261 cgatctgaat atggatgtgt acgttccgct cactactttt ctgggtcggt ttacacatga
     1321 aaaccaactc accagtgaga ttcaacaaat aacggttcag gttgatggtt ctgacaaact
     1381 ggaagaagca tccaaagtga ttgatgaaat tctgaagcgg catcattaca acaatgaaga
     1441 ttacagcatt gtagtacctt tcgaattgtt acaacaagag gaaaaagagc ggcaaattta
     1501 taattttcta ttgggagcta ttgctgccat ttccttattg gtcggtggta tcggtattat
     1561 gaatattatg ttggcaacgg ttatggaacg tacccgtgaa attggaattc gtcgggcaat
     1621 tggggcgcgt aagtcagaca ttatgagtca gtttgtaacc gaagcagtag ccataagcat
     1681 caccggcgga ataatcggtg tcgtgctagg tataacgcta tcgctcacag ttacactttt
     1741 cacagatata acaacgtaca tacaaccata ttcgattttt atagctttcg gattttcagt
     1801 attggtgggc attagtttcg gttatttgcc ggctaaaaac gctgcgaatt taaaaccaat
     1861 tgattcaata cgttacgaat aaagagaatt tacatttggg aatgccaata ggctcaatct
     1921 gttaacccaa ttgtaattgt aattcaaaaa tcttaaatga agaaaagatg cttatagaaa
     1981 taaaaagttt gtcgaaaaat tatataatgg gcgaggtgga tgtacctgca ctaatggaca
     2041 ttaatctaca aatccgcaaa aatgaatatg tagctatcat gg
//
LOCUS       DATDNM010000837         2184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_953937, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000837 DATDNM010000000
VERSION     DATDNM010000837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2184
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_953937"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(338..1240)
                     /locus_tag="VI413_14000"
     CDS             complement(338..1240)
                     /locus_tag="VI413_14000"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY6915785.1"
                     /translation="MSDIKVSVIIPVYNTAVYLHEAIASILNQSLKEIEIIAVNDGSA
                     DNSLEILNELALVDNRLKVISFDQNVGVSVCRNTGLENARGGYIYFFDSDDILESDCL
                     EICYQKMVDGNYDFIIFDGVSFYEDGIKPTFSGNYRRTDLLTRNSYTGGELADKLISQ
                     KAYSCSVCLCFINKEFLENTGLKFYPGVLYEDVLFTILLHLYAQHVSFVTRSFFHRRV
                     RANSTMTTSISQKNINYRLIVCNEIIRFKQKFSDSESKRLLNLQVWSVLKFLIKSLLR
                     TRQIKLLLSNGCQILILLLNASRI"
     gene            complement(1252..>2184)
                     /locus_tag="VI413_14005"
     CDS             complement(1252..>2184)
                     /locus_tag="VI413_14005"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6915786.1"
                     /translation="CLDSLKQQTLNDLEFILILDRPTDGSDKVAGEYARNDGRFKLIY
                     NQENLHTGFSRNQGIKHASGEYVGFADHDDYCEPEMFEQLYIKAVKENADVVISNYFD
                     ENPVSKTFFAFPEGYSDKEFQHRAFKALISADYSIRNSKSFNNMNVIWNQIYRRDFLL
                     LHQITFPDNRIFTMEDVFFSLKVYHFAQKVCYLPETYYHHVNTSVNTYDNYSYRSIKK
                     IIPLLEEIYKFLNENNIWEKYRNDFTLCTLKRLYSSFRNELKFKGLSTITSFLTLIRN
                     NSELQSILSNFSGNKALQKRIALTKKLFLITIRK"
BASE COUNT          685 a          395 c          376 g          728 t
ORIGIN      
        1 aggaagcatt accagcgaga gaattccttt aattttattc ataataaatt tacaaatatg
       61 tatttaataa tgtcttttct gaatcaatcg ccattttgat acgttactaa atttgcgatt
      121 tttaatctgc aaatttaaaa ataatttacg gattttatat aaaaaaatat ttttttgtct
      181 aaatattccg ctttaatgta aaaagtcttc cattattgct gtttttactg caatcatgaa
      241 agactcatta gtatgtcaaa actccacgga aagaatgtat ttcgataggt aggacgctgt
      301 cagtatgtac tattgatata cccggattag gatagtacta aattcttgat gcgttgagca
      361 gaagtataag tatctgacac ccattggaca ggagtaactt aatctgacgt gttcgcaaca
      421 agcttttgat taaaaacttc aagacactcc atacctgtaa attaagtagt cgtttacttt
      481 cggaatcaga aaacttttgt ttgaaccgga taatttcatt acagacaatg agacgatagt
      541 tgatgttttt ttgcgaaatt gaggttgtca tggtcgagtt tgcacgaacc cggcgatgaa
      601 agaagctgcg agtgacaaaa ctaacatgtt gagcatacaa atgaagtaaa atagtgaata
      661 atacatcttc gtacaatacg ccgggataaa atttcaatcc cgtattttct aagaactcct
      721 tgttgataaa acaaaggcaa acgctgcacg aataggcttt ttgtgaaatt aatttgtctg
      781 ctaattctcc cccagtgtag ctattcctgg ttagtaaatc tgttcgtcta tagttgccgc
      841 tgaatgtcgg ttttatccca tcttcgtaaa acgaaacacc atcaaaaatt ataaagtcat
      901 agttcccgtc gaccattttt tgataacaaa tttccagaca gtcactttcg agaatatcat
      961 cgctgtcaaa aaaataaata tatcctcccc gggcgttttc taaacctgta tttctgcaca
     1021 ctgaaacgcc tacattttga tcgaatgaga ttactttcag ccgattatca actaaggcca
     1081 attcgttcag tatttccagc gaattatccg ctgatccatc atttacggca ataatctcaa
     1141 tctctttcag cgattgattc aatatagaag caattgcctc atgcaaataa acagccgtat
     1201 tgtaaaccgg aattataaca cttaccttaa tgtcgctcat agacggactt attattttct
     1261 tattgtgatt aaaaataact ttttagtcaa agctatgcgt ttttgtaaag ctttattgcc
     1321 actaaaattg ctgaggattg actgcaattc actattgttt cggattaatg tcaaaaacga
     1381 tgttattgta gataatcctt tgaattttag ttcgtttcta aatgaagaat ataatcgttt
     1441 taacgtgcat aatgtaaagt cattacggta cttttcccag atattatttt cattaagaaa
     1501 cttatagatt tcttcgagta gaggaattat tttttttatg gagcggtatg aataattatc
     1561 ataggtattc acacttgtgt ttacatggtg ataataagtt tcaggcaaat agcatacttt
     1621 ctgtgcaaaa tgatatactt tcagactgaa gaatacatct tccatagtaa aaatccggtt
     1681 gtcgggaaat gtgatctgat gtagcaataa aaaatcacga cggtagattt gattccaaat
     1741 aacattcata ttattgaacg atttggagtt ccggatggaa taatcggcac tgattagcgc
     1801 cttgaaggcc cggtgctgaa attctttatc gctataacct tccgggaagg caaagaaagt
     1861 tttactgacc ggattttcgt cgaaataatt actaattaca acatcggcat tttcctttac
     1921 agcctttata tacagttgtt cgaacatttc aggctcgcag tagtcatcat gatcggcaaa
     1981 accaacatat tctccgctgg catgttttat cccctggttt cgcgagaagc cagtgtgcaa
     2041 attttcctgg ttgtaaatca acttgaacct cccatcattt cgtgcatatt ctccggccac
     2101 tttatcgctt ccatcggtag gacggtctaa aattaaaata aactcaagat cgttcagggt
     2161 ttgttgcttc aacgagtcga ggca
//
LOCUS       DATDNM010000838         2807 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2129288, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000838 DATDNM010000000
VERSION     DATDNM010000838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2807
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2129288"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1094
                     /locus_tag="VI413_14010"
     CDS             <1..1094
                     /locus_tag="VI413_14010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEY6915787.1"
                     /translation="KQFMKVLSTIYPLMPKEVIKQRLLSFHSNYSFQKEMVYPFLQYL
                     EANMTKGIDLNGLDKIDKSKPYLYISNHRDIILDSAFLCGKLIEKEMDTVEIAIGDNL
                     LIYPWIEDLVRVNKSFIVKRGLSARQILESSQRLAAYIAYTINAKNQSIWIAQREGRA
                     KDSDDRTQESLLKMFNMSGTGSFIENISKLNICPLSISYEYDPCDFLKAMEMQQRRDS
                     SCFKKQPQDDLINMQTGVMGYKGKVVYQITGDINRDLQRIAAETTNRNEQIELTAELI
                     DRRIHANYTIFANNKIAYDLLKKDNQFGNEYSTMEKLDFEKYLSMQIAKIDLENKDED
                     FLMRKLLEMYANPLINQLATYQDLGQDGD"
     gene            complement(1162..2553)
                     /locus_tag="VI413_14015"
     CDS             complement(1162..2553)
                     /locus_tag="VI413_14015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009596543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HEY6915788.1"
                     /translation="MKNKYKDLIEQTFEFPNDEFNVIENELEWCGVPLMDIIKQYGTP
                     LRIAYLPKIAQNIQKARRMFNVAMAKVDYNGDYNYCYCTKSSHFSFVMEEVLKHGVHL
                     ETSSAFDINIMESLYDQGLLKQDTFVVCNGFKRPQYVENIQNLMRQGFTNVIPILDNK
                     FELDLFLKDFDIKFNVGIRIAAEEEPKFDFYTSRLGIRYNDIIPYYTKHIATNPQVEL
                     KMLHFFINTGVKDTAYYWNELNKAVNLYCELKKKCPQLDSLNIGGGFPIQTHLDMVYD
                     YEYMAEEIVAQIKTICAQNGVPEPHIFTEFGSYTVGESGAMLYSIVNQKKQNDRELWN
                     MIDSSFMTTLPDTWAINQRYVFLAINNWDSEYERVNLGGLTCDSEDFYNAEVHSNAVF
                     LPKMHEDREQYIGFFHTGAYQESLSGFGGIQHCLIPAPKLVIIDQDEDGEYFTKLFAK
                     EQSYKSMLKILGY"
BASE COUNT          978 a          532 c          445 g          852 t
ORIGIN      
        1 aaaagcagtt tatgaaggtg ttgagcacta tatatccatt aatgcctaag gaagttatca
       61 agcaacgatt gcttagcttc cactctaatt attcatttca aaaagaaatg gtttatcctt
      121 tcttgcaata tctggaagcc aatatgacta aaggtataga tttgaatggc ctggataaga
      181 ttgacaaatc gaagccctat ttatacattt ctaatcatcg cgatatcatc ctggactctg
      241 catttttatg tggaaagctc attgagaaag aaatggatac tgttgaaatt gctattggag
      301 acaatttact gatttaccca tggattgagg atttggtaag agtaaataaa agctttattg
      361 tcaagcgagg gttaagtgcc cgccagatac tcgaaagttc tcagcgatta gctgcttaca
      421 tcgcttatac aatcaacgct aaaaaccaat caatctggat tgctcaacgt gaaggacgcg
      481 caaaagattc ggatgacaga acgcaggaaa gtctcttgaa aatgttcaac atgagtggaa
      541 ctggaagttt tattgaaaat atttccaaat tgaatatttg cccgcttagc atttcgtacg
      601 agtatgaccc atgcgatttc cttaaagcaa tggaaatgca acaacgccgc gacagctcgt
      661 gttttaaaaa gcaaccgcaa gacgatttga ttaatatgca aactggcgta atgggttata
      721 aaggcaaagt tgtctatcaa atcacgggag acataaacag ggatttacag cgtattgctg
      781 ctgaaacgac aaacagaaat gagcaaatcg aactgacagc tgaattaatt gacagacgca
      841 tccatgccaa ttacactata tttgcaaaca ataaaattgc atacgaccta ctcaagaaag
      901 acaatcagtt tggaaatgaa tattcaacca tggaaaaact tgactttgag aaatatctct
      961 ccatgcagat tgcaaaaatc gatttggaga ataaagacga agattttctg atgcgaaaac
     1021 tgttagaaat gtatgccaac ccacttatta atcaactggc tacttatcag gatttaggtc
     1081 aggatggtga ttgattaatt gataaaataa aaaatgcgtt cgaaaaatcc gaacgcattt
     1141 tttattttat atcattttag attaatatcc caagattttc aacattgatt tataactctg
     1201 ctctttagca aaaagttttg taaagtactc tccatcttca tcctggtcaa taataaccaa
     1261 cttaggtgca ggaatcaaac aatgctgaat gccaccaaaa ccacttagag attcctgata
     1321 ggcacctgta tgaaagaatc caatatattg ttcccggtcc tcatgcatct tcggaagaaa
     1381 aacagcattt gagtgaacct cagcattgta aaaatcttca ctatcacagg tcaatccacc
     1441 caggttcaca cgttcatatt cagaatccca attattaata gccagaaaca cataacgttg
     1501 atttattgcc caggtatcag gcaaagtcgt cataaacgaa ctatcaatca tattccaaag
     1561 ctcgcggtca ttttgttttt tctgatttac aatagagtaa agcattgcac cactttctcc
     1621 tactgtgtaa gaaccgaatt cagtaaagat atgtggttca ggcacaccat tctgtgcaca
     1681 aattgtttta atctgcgcaa caatctcttc agccatgtat tcgtaatcgt acaccatatc
     1741 aaggtgagtt tgaataggaa aaccaccacc tatgttcaag ctatccaact gaggacattt
     1801 ctttttcaac tcacaataca aattcacagc tttgtttaac tcgttccaat aataagcagt
     1861 atcttttact cctgtattaa taaagaaatg caacatcttt agttcaactt gtggattagt
     1921 tgcaatgtgc ttagtataat atggaataat atcattatat cgaataccta agcgtgaagt
     1981 atagaaatca aacttaggtt cttcttctgc tgcgatacgt atacctacgt tgaatttaat
     2041 atcaaagtcc tttaggaaca agtctaattc aaacttatta tcaagaatag gaataacatt
     2101 tgtaaatccc tgacgcatta agttctggat gttctccaca tattgaggtc gtttaaatcc
     2161 attacataca acaaatgtat cttgtttaag caacccctga tcatataaag attccattat
     2221 attgatatca aacgctgacg atgtttccaa atgaacacca tgtttcaaca cctcttccat
     2281 aacaaaagag aagtgtgaac tctttgtaca ataacaataa ttgtaatctc cgttatagtc
     2341 tacttttgcc atagccacat tgaacatacg acgcgctttc tgtatattct gggctatttt
     2401 aggcagatat gcaatccgca aaggcgttcc atattgctta attatgtcca ttaacggaac
     2461 accacaccat tccagttcat tttcaatcac attgaattca tcattaggaa attcaaatgt
     2521 ttgctcaata agatctttat acttattctt catcttactt tttatttacg aaaattactc
     2581 aatctaactc acttagatta aagaaaaaaa tacaatctaa cttacatggc ttacaaatat
     2641 accatcaaaa aagtttgcaa aagtaactat ttaattgatt aatcgagtaa attaagctca
     2701 gtattttcaa tttagaaaca aaaaatagca atagtgaata ctcctaaatc aactattatc
     2761 aattataacc caaaagcata gaaaacgaca aagtatctga tttatcg
//
LOCUS       DATDNM010000839         2692 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1701591, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000839 DATDNM010000000
VERSION     DATDNM010000839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1701591"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..171
                     /locus_tag="VI413_14020"
     CDS             <1..171
                     /locus_tag="VI413_14020"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6915789.1"
                     /translation="FLTVYFAPVIHGALGLQYLFGIFGIFSIIAFVFVKFWIPETKGK
                     SLEQIEKELGLN"
     gene            261..1133
                     /locus_tag="VI413_14025"
     CDS             261..1133
                     /locus_tag="VI413_14025"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HEY6915790.1"
                     /translation="MENVIVGIGEILWDVFPTGKVLGGAPANFAYHVSQFGFEGYAVS
                     AIGGDELGDEIVGVLSNNKLKYLIGTTPYATGTVQVTLSGNGIPQYEICENVAWDNIP
                     FTEEMEELACKTKTVCFGSLAQRSSVSRQTINRFLDCVPKTALKIFDINLRQHFYTLE
                     LIEHALDRCNILKINDEEIIIVGELFGWQSKSELEICNQLLHNCNLEIVVLTKGTEGS
                     YVVTKTETSFKPTPLVEVADTVGAGDSFTAGFVASLLKGKSVSEAHQIAVDVSAFVCT
                     QHGAMPVLPDSIIQ"
     gene            1264..2145
                     /locus_tag="VI413_14030"
     CDS             1264..2145
                     /locus_tag="VI413_14030"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HEY6915791.1"
                     /translation="MKNVIVGLGEILWDVFPHGKVLGGAPANFVYHVSQFGYEGYAVS
                     AIGNDHLGDEIIESLKNKELNFLIERTDFPTGTVKVKIDENGAPQYEICEDVAWDNIP
                     FTEEMEQLARRTKTVCFGSLAQRNPASRASINAFLDFVSPEALIIFDINLRQHFYSKE
                     LIDESLSRCNILKINDEELATVAELFEWGYKTELEVCHQLLEDYTLNMVVLTKGANGS
                     YVITPTGTSFKKTPRIVVADTVGAGDSFTASFVAALLNGKSINEAHNLAVEVSAFVCT
                     QHGAMPLLPDSFLSMIS"
     gene            2302..>2692
                     /locus_tag="VI413_14035"
     CDS             2302..>2692
                     /locus_tag="VI413_14035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005943001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6915792.1"
                     /translation="MKKHILVFLLLAIVFSACKDDNANDKKVIGVSQCSDDAWRRTMN
                     NEMLREAAFYPGVEVKIKTAHDSNQKQIRDIESFIAEGVDLIIVSPNEAVPLTPVIEK
                     AMKEGIPVVLVDRKISNGQYTAFVGADN"
BASE COUNT          807 a          458 c          617 g          810 t
ORIGIN      
        1 ttccttaccg tatattttgc tccggtaatt catggagcgt tggggttaca gtatttattc
       61 gggatatttg gcatattcag cattattgca tttgtgttcg taaaattctg gattcctgaa
      121 accaaaggaa aatcattgga acaaattgaa aaggaattag gactaaatta attatattaa
      181 ccacatagac acataggtca caatagaaag aatgtatgat tttgtgtgct atgtgcctat
      241 gtggttcaaa aaagaaaatc atggaaaacg ttattgtagg tattggagaa attttatggg
      301 atgtattccc aactggtaaa gtgctgggtg gagcacccgc aaattttgcg tatcatgtgt
      361 cgcagtttgg attcgaagga tatgctgtca gtgcaattgg tggcgatgaa ttgggtgatg
      421 agattgtagg tgtcctgagt aataataaat taaaatatct gattggaaca actccttatg
      481 caacaggtac tgttcaggta acgctttcgg gaaatggtat tccccaatac gaaatctgtg
      541 agaatgtggc ctgggataat atcccgttta ctgaagaaat ggaggagttg gcctgtaaaa
      601 cgaaaacagt ttgctttggt tcattagcac aacgtagcag cgtatcaagg cagacaataa
      661 accgcttttt agattgcgtg ccaaaaacag cactaaaaat atttgatatt aatttgcgtc
      721 agcatttcta taccctggaa cttattgaac acgccctgga ccgttgcaat atcctgaaaa
      781 ttaatgacga ggaaataata atcgtaggag aattgtttgg ttggcaatct aagagtgaat
      841 tagaaatttg taatcagctt ttgcataact gtaatctgga aatcgttgtt ctgacgaagg
      901 ggaccgaggg aagttatgtc gttactaaaa cagaaacatc gtttaagcca acacctttgg
      961 ttgaagtggc tgatacggtt ggtgccggtg attcttttac tgccgggttt gtagcttctt
     1021 tgttgaaagg aaaaagtgtt tccgaagcgc atcaaattgc cgtggatgtt tcggcatttg
     1081 tatgtactca acatggagcc atgcctgttt tacccgattc cattatccaa taactcttag
     1141 aatttattcg ttttccatac gtaacataat aaattttgtt tgctatatta agaattttct
     1201 gtattattgc agtcgtagag gcaggtctca acctgtcctt acgaaacaga caaaaaatat
     1261 actatgaaaa acgttattgt aggtttgggc gaaattttgt gggatgtatt cccgcatgga
     1321 aaagtgctgg gcggcgctcc ggcaaatttt gtctatcatg tgtcgcagtt cggatacgaa
     1381 ggatatgccg ttagcgctat tggcaatgac catttgggtg atgaaattat tgaaagcctc
     1441 aaaaacaaag aactcaactt tctgattgag cggactgatt ttccaaccgg tacggtaaag
     1501 gtcaagattg atgaaaacgg tgctcctcaa tatgaaattt gcgaagatgt ggcctgggat
     1561 aatattccct ttacggagga aatggaacag ttggcccgta gaacaaaaac cgtttgcttt
     1621 ggttcgctgg ctcagcgtaa tcctgcttcg cgtgcgtcca ttaatgcctt tttggatttt
     1681 gtttcgccgg aagcactgat tatttttgat atcaacctgc gccagcattt ttattctaaa
     1741 gaattgattg atgaatcatt gtcgagatgc aatattctga aaattaatga tgaagaatta
     1801 gctacagtgg cagaattatt cgaatgggga tataaaaccg agttggaggt ttgccatcaa
     1861 ctgcttgaag attatacgct aaacatggtg gttttgacca aaggagcaaa tggaagttat
     1921 gtcattacgc ccacaggaac atcgtttaaa aagactccaa gaatagttgt ggccgatacg
     1981 gtaggagcgg gagattcatt cacagcctct tttgtggcag ctttattaaa cggcaagagt
     2041 ataaatgagg cgcataatct ggcggttgaa gtttcggcat ttgtatgtac acaacatggg
     2101 gcaatgcctc tgttaccgga ctcgtttcta tcaatgatta gctagacact gaatgattta
     2161 tagagcttaa aaaccgatct ttccttgtgg tctgatcggt ttgtttactt ttaagtagta
     2221 acagggaata atttgtaatc ggaaaataac tacatttgac tcaataatgg gtatctgacc
     2281 tttacccgcc agcaaaaaga aatgaaaaaa cacatactcg tatttttact ccttgcaatt
     2341 gtgttttctg cttgcaagga tgataacgca aatgataaaa aagtaatcgg cgtttcgcaa
     2401 tgtagtgatg atgcctggcg ccggaccatg aataatgaaa tgcttcgtga agcagctttt
     2461 tatccgggag ttgaagtaaa aatcaagaca gctcacgata gcaatcaaaa gcaaatccgt
     2521 gatatcgaaa gcttcattgc cgaaggggtt gatttgatta ttgtttcgcc taatgaagcc
     2581 gtgccactta cacctgttat cgaaaaagcc atgaaggaag gcattccggt ggtgcttgtc
     2641 gaccggaaaa taagcaatgg gcaatacacc gcttttgtgg gagccgataa tt
//
LOCUS       DATDNM010000840         5210 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1276029, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000840 DATDNM010000000
VERSION     DATDNM010000840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5210
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1276029"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..2024)
                     /gene="thrS"
                     /locus_tag="VI413_14040"
     CDS             complement(78..2024)
                     /gene="thrS"
                     /locus_tag="VI413_14040"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEY6915793.1"
                     /translation="MIKVTFPDGSVREFAKGITGLQLAESISSRLAQEVLAITVNDEI
                     WDLTRPIETDAAIKLHKWDDEEAKHAFWHSSAHLMAEALQELYPGIKFGIGPAIENGF
                     YYDVDPGEVSIKEGDLAAIEAKMLELAARKEAIVRTDISKADALARFEAIGEVYKTEM
                     INDLTDGTITLYSQGNFTDLCRGPHLPNTGDIKAIKVLSVAGAYWRGDEKRKMLTRLY
                     GITFPKKKMLDEYLVLLEEAKKRDHRKIGRELELFMFSEMVGKGLPIWLPRGTALRLR
                     LEDFLKKIQRRFDYQQVMTPHIGNKQLYVTSGHYAKYGKDSFQPIHTPEEGEEYLLKP
                     MNCPHHCEIYKFKPRSYKDLPLRLAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIFCR
                     PDQVKDEFLKVMDIIFIIFKALEFENFEAQISLRDPNNREKYIGTDENWDKAEQSIIE
                     ACAEKGLKAKIETGEAAFYGPKLDFMVKDAIGRRWQLGTIQVDYNLPERFELEYTGED
                     NAKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLWLTPDQVVVLPISEKFNDYAFQIA
                     KQMNSQDIRVTVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENGEVAVRRQGEGDKG
                     TMTVAEFSKLITDEVDALVNQYNK"
     gene            2229..2714
                     /locus_tag="VI413_14045"
     CDS             2229..2714
                     /locus_tag="VI413_14045"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY6915794.1"
                     /translation="MNETEIVSIDRIIENLIYLHPLLSKSLTRSIRAKTNLNPGSLYI
                     LGLLSKYDVLSMSEIGCKLAMPKPHVTAQVDKLIAEDMVERLFDKNDRRIINIRFTEK
                     GKEDFKAIKQEISRDMRERIAKLDKQKLTILSDATQQVRDILSEIMIDKNTTVCNKNQ
                     E"
     gene            2750..3745
                     /locus_tag="VI413_14050"
     CDS             2750..3745
                     /locus_tag="VI413_14050"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HEY6915795.1"
                     /translation="MTKKKDLKIYIPLIAVIIIVIVSGIYWYIDYSSYIKTDDALVTS
                     DVVTVSPKIMGRISKVYVEEGDSVKEGQLLAELDSTDLLAQKQQIVSMKAQTVAGKAQ
                     AEAKYQYDVKNIEVLKINVDRAKDDFDRSKTQFAGGVTTKEQYDHLKKALETAQAQLD
                     AAKSQILVSKTQINSAQTTVASSQAQIEVINTQLKNTKLYAPVSGVAARRWLLAGDIV
                     NPGQSIYTINNNQKFWVTIYLEETKVEKLHIGQAAKFTLDTYPDVVFTGKIFFLGSTT
                     ASQFSLIPASNASGNFTKVTQRVQIKISIDGTEKGEKLSAFRLMTGMSAVVKIVK"
     gene            3748..>5210
                     /locus_tag="VI413_14055"
     CDS             3748..>5210
                     /locus_tag="VI413_14055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEY6915796.1"
                     /translation="MRKLSRTHRIRRKLRSRDSVYHPKHQRYKWFVLANVMLGTFMAV
                     LDSTIVNVSLPKIMSSFGVGLSTIQWVVTAYMLALAAMLPTSGWLADKFGYKRVYFWG
                     LFLFTFGSLLCGLSNDETTLILSRIIQGLGAGMIQPLGMAIITREFPPQQRGIALGFW
                     AISAAASVSFGPIIGGYLVDNFNWQLIFNVNVPVGIVALLFTIVVQREFINKQVRKFD
                     YIGFISVIIFLPVLLFALSEGNAQTNSEGWSAPYILVCFAIALVGLAVFLTQELTTEY
                     PLLDLRLLKDRNFGLANIVMLLFGIGMFGSTFLLPLYLQNSMGYTALQSGAVFLPVGI
                     IQGAMSPIAGIFSDKVNAKVPIFVGIGLMVFSFYLNSELSFLTEHAFVMTSLYLRGLG
                     MGLLFTPLSSLSLATISRDKMAQASGITNTVRQVGGSLGVALLSTVLTSRVNYHTQIF
                     GGALQSNSQVFQNTTRGIANYIQHNAGSSAAVAAKQS"
BASE COUNT         1542 a         1091 c         1050 g         1527 t
ORIGIN      
        1 caattattct aacataaaaa aaacgcgaac cggctcaccc gattcgcgtt tcttcattat
       61 gaattatgaa ttatgcatta tttattgtat tgatttacca acgcatctac ctcgtcggta
      121 atcagttttg aaaattcagc cactgtcatg gtgcctttgt caccttcgcc ctgacgacgt
      181 acagctactt caccattttc agcttctttt tctcccacaa tcaacatata aggaatacgt
      241 ttcaattcgt tatcgcgaat tttgcgacca attttttcgt tacggtcatc cactgttaca
      301 cgaatatcct gcgagttcat ttgcttcgca atctggaacg cgtaatcgtt gaatttctca
      361 ctgattggca aaacaacaac ctggtcaggt gtcaaccaca atgggaattt accggctgtg
      421 tgctcaatca gtaccgctac gaaacgttcc atagaaccaa acggcgcacg gtgaatcatt
      481 accggacggt gtttagcatt atcctcaccg gtgtattcca actcgaaacg ttccggcaaa
      541 ttgtaatcca cctgaatggt tcctagctgc cagcgacgac cgatagcatc tttcaccatg
      601 aagtcaagtt ttggaccgta gaatgcggct tcaccggttt caattttggc tttcaatcct
      661 ttttcggcac aagcttcaat gattgattgt tccgctttat cccagttttc gtcagtacca
      721 atatactttt cacggttgtt cgggtcacgc aatgaaatct gcgcttcgaa gttctcgaac
      781 tccaacgctt tgaaaataat aaagataata tccattactt tcaaaaactc atctttcacc
      841 tgatccggac ggcagaaaat atgcgcatca tcctgtgtaa agctacgtac acgggtcaat
      901 ccgtgcaact cgccgctttg ctcgtaacgg taaacggtac caaactcagc cagacgcaac
      961 ggaagatctt tgtacgaacg aggtttgaat ttgtaaattt cgcagtggtg cgggcagttc
     1021 atcggtttca acaggtattc ttcaccttct tcgggcgtat gaataggttg gaacgaatct
     1081 ttaccatatt tagcgtagtg gcctgaagtc acatacaatt gtttgtttcc gatatgtgga
     1141 gtcattacct gttggtaatc gaaacgacgt tggattttct tcaaaaagtc ttccagacga
     1201 aggcgcaaag ctgttccgcg tggcaaccag attggaagtc ccttacccac catttcggag
     1261 aacataaata actccagttc acgaccaatt ttgcggtggt cacgcttttt agcttcttcc
     1321 aacaaaacca aatactcatc gagcattttc tttttaggga aagtaatgcc gtaaaggcga
     1381 gtcaacattt tacgtttttc gtcaccacgc cagtatgcac cagctacgct caacactttg
     1441 atagctttaa tatcaccggt attgggcaag tgaggtccac gacacaaatc ggtaaaatta
     1501 ccttgcgaat acaaagtgat agttccgtcc gtcaggtcgt taatcatttc agttttatat
     1561 acttcgccaa tagcttcgaa gcgggccaac gcatcggctt tgcttatatc tgtacgaacg
     1621 atggcttctt tgcgtgctgc caactcgagc attttagctt cgatagccgc caaatcacct
     1681 tctttaatag atacttcacc cggatctacg tcgtagtaga aaccgttttc gatagccgga
     1741 ccgataccga atttaatgcc cggatacaat tcctgcaggg cttcggccat aaggtgggct
     1801 gacgagtgcc agaaagcatg tttagcttcc tcatcgtccc atttatgcaa tttaatggct
     1861 gcatcggttt cgattgggcg ggttaggtcc catatttcgt catttactgt gatagcaagc
     1921 acttcttgtg ccagtcggga gctgatactt tcagccagtt gaagtccggt aatgcctttg
     1981 gcaaattcgc gtaccgaacc gtcggggaat gttactttaa tcatacgttt tgaaccttac
     2041 aaatggtttt taaattttga gttgcaaaga taagattttt gaacgcaaat gatgcaaaaa
     2101 ccacggatga actaaaaaaa actatcacag atgaacaaaa agggatattt gtcgttaaat
     2161 tacacaaaca aaatagttca tactaaataa tagttatact tttgtaacca tttccaaaac
     2221 gaaccattat gaatgaaact gaaattgtgt caatagacag gataattgag aatttaattt
     2281 acctacaccc cttactttca aagagtttaa ctcgttcaat ccgggcaaaa accaatctga
     2341 acccaggaag tttatacatt ttgggcttac tcagtaaata cgacgtgctg tcgatgtcag
     2401 aaatcgggtg caaattagca atgcccaaac cacacgttac agcccaggtt gataaattaa
     2461 ttgcagaaga tatggtggaa cgtttatttg ataaaaacga cagacgaatc atcaatatcc
     2521 ggtttacaga aaaaggcaaa gaagacttca aagccatcaa acaagaaata agcagagata
     2581 tgcgcgaacg tatagcaaaa cttgataaac aaaaattaac gatattgtca gatgcaactc
     2641 aacaagtcag agacatatta tcagaaatca tgatagataa aaatacaaca gtgtgtaaca
     2701 aaaaccaaga ataattaaaa tcgtatataa acatctaaaa tttagaaata tgacaaagaa
     2761 gaaagatctg aaaatttaca tcccgcttat tgctgtgatt attattgtaa ttgttagtgg
     2821 catttactgg tatatcgatt acagcagcta cattaaaacc gatgatgctc tggtaacatc
     2881 tgatgttgtt actgtaagcc ctaaaataat gggacgaatc agcaaagtat atgtagaaga
     2941 aggagattca gtaaaagaag gacaattatt ggctgaactt gatagtaccg atttattggc
     3001 acagaaacaa caaatagttt caatgaaagc tcaaactgta gccggtaaag cacaagctga
     3061 agcaaaatat caatacgatg tgaaaaatat tgaagtattg aaaatcaatg tggatcgtgc
     3121 caaagatgac ttcgatcgct ctaaaactca gtttgcaggt ggtgttacta ccaaagaaca
     3181 atacgaccat ctgaaaaaag ctcttgaaac agctcaggca caactggacg ctgcaaaatc
     3241 acagattctg gtttcaaaaa cccagatcaa cagtgctcaa acaacagtag cttcatcaca
     3301 ggctcaaatt gaagttatca atactcaatt aaaaaacaca aagttatatg caccggttag
     3361 cggagtagct gcaagacgtt ggttgcttgc cggcgatatt gtaaatccag gacaatcgat
     3421 ctacacgatt aacaacaacc aaaaattttg ggtaactata tatcttgaag aaacaaaagt
     3481 agaaaaactg catattggcc aggctgcgaa attcacactc gacacctacc ctgatgtggt
     3541 atttacagga aaaattttct ttcttggttc aaccactgca tctcaatttt cgttgattcc
     3601 ggcaagcaat gcttctggta acttcactaa agtaacacaa cgtgttcaga tcaaaatttc
     3661 gattgacggt actgaaaaag gtgaaaaatt atccgctttt cgtttgatga ccggtatgtc
     3721 agccgtagtt aaaatcgtaa aataagaatg agaaaacttt caagaacaca tagaatacgt
     3781 cggaaactcc gcagcagaga ttcagtttac catccaaaac atcaacgata caaatggttt
     3841 gtattggcca atgtgatgct gggaactttc atggcggtgc tcgacagtac catcgtgaat
     3901 gtaagccttc ccaaaattat gtcgtcgttt ggcgtggggc tgtccaccat ccaatgggtg
     3961 gttacggctt acatgcttgc cctggcagcc atgcttccga cttctggttg gctagccgac
     4021 aaattcggat acaaacgggt ttatttctgg ggattgtttc tgtttacgtt cggatcgttg
     4081 ctttgtggtt tatcaaacga tgaaacaaca cttatcctat ctcgtattat tcaggggttg
     4141 ggagccggaa tgattcagcc tttgggtatg gctattatta cccgtgagtt tccacctcaa
     4201 cagcgtggta tcgctctggg cttctgggca atttcagcag ccgcctccgt ttcattcgga
     4261 ccaattattg gtggctacct ggtagataat tttaactggc aactcatttt caacgtgaat
     4321 gtgccggtag gaattgtagc gcttctgttt accattgtgg ttcaacggga atttataaac
     4381 aaacaagtgc gcaaatttga ttatatcggg tttatttcgg tcatcatctt tttaccggtg
     4441 ttgctttttg ccctttccga aggaaatgca caaaccaatt ccgaaggttg gtcggctccg
     4501 tacatacttg tttgttttgc catcgcgttg gtaggactgg ctgtattcct gacacaggaa
     4561 ttaactactg aatatccttt actggatttg cgactgttga aagatcgaaa ttttggattg
     4621 gccaacatcg tcatgttgtt atttggtata gggatgtttg gaagtacttt tttgcttcca
     4681 ttgtatctgc aaaattcgat gggatatact gcattgcaat cgggagctgt gttccttccc
     4741 gtagggatta ttcagggagc catgtcacca atagcaggta ttttttccga caaagtgaat
     4801 gcaaaagtgc ctatatttgt gggaatcgga ctcatggttt ttagctttta cctgaattca
     4861 gagctttcat ttcttaccga acatgcgttt gtaatgacat cgctttactt aagaggactt
     4921 ggtatgggtc tgcttttcac tcctctaagc tctttgtcgc tggctactat ctccagagac
     4981 aaaatggctc aggcttcggg aattactaac actgttcgtc aggttggagg tagtttggga
     5041 gtagcacttt tgtcaactgt attgacttca cgtgtaaatt accatactca aatttttggt
     5101 ggagctttgc aatccaattc gcaagtattt caaaatacaa cgcgaggaat tgccaattat
     5161 atccaacata atgctggtag ttctgctgct gtagctgcca aacagagtca
//
LOCUS       DATDNM010000841         2131 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_954113, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000841 DATDNM010000000
VERSION     DATDNM010000841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_954113"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1604)
                     /locus_tag="VI413_14060"
     CDS             complement(<1..1604)
                     /locus_tag="VI413_14060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEY6915797.1"
                     /translation="MSNPFDNFFSEDMPGSTEMFPIISLDERSSELSIISGDVLPILP
                     LRNMVLYPGVLLPVSVARPKSLKLVRAAHENDLLIGVCSQIDKKLEDPTIEQLYPMGT
                     VAQVVRILEMPDNTTTVILEGKRRFMLGELESVKPYMKAKVNLVEDIFPDPNDGLFQA
                     LVSSIKDLATNIINNSGAMSPEMAFAIRNIENPIFLINYVCVNFGLNVKEKQRLLEID
                     EVMERGYQLLELLNKESQLLEIKLSIQNKAKEGIDQQQREYFLQQQMKTIQNELGGGS
                     AEEDVADFRERAKVKKWNDAVAKAFDKELKKLERTSQHSPDYSTQLNYVETMLDLPWN
                     EYTKDNFNLKNAKKVLDKDHFGMETVKDRILEHLAVLKLKGDMKSPIVCLYGPPGVGK
                     TSLGKSIATALNRKYVRISLGGLHDEAEIRGHRRTYIGAMQGRIMQNIQKAESANPVF
                     VLDEIDKITADYKGDPSSALLEVLDPEQNTAFHDNYLDVDFDLSKVLFIATANNLSTI
                     PRPLLDRMELIEVSGYTQEEKLEIARR"
     gene            complement(1879..>2131)
                     /locus_tag="VI413_14065"
     CDS             complement(1879..>2131)
                     /locus_tag="VI413_14065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEY6915798.1"
                     /translation="YQHPDVACSYSMTSKSVLCKGAVTFVDDMMEKTELMNLLMKNYT
                     DRPFKYSTPALMNVKVWRVSIDEMTGKSFGQNFKQSSDL"
BASE COUNT          660 a          448 c          334 g          689 t
ORIGIN      
        1 cgacgggcaa tttcaagctt ttcttcctgt gtatatccac taacttcaat aagttccata
       61 cgatctaaca aaggacgcgg aatagtgctt agattgttgg cagtagctat aaaaaggacc
      121 tttgataagt caaaatcaac atccagataa ttgtcgtgaa atgctgtgtt ctgttcagga
      181 tcaagcactt caagcaatgc tgaagatgga tcacctttgt aatcggccgt gattttatct
      241 atttcatcca aaacaaaaac aggattggca gattctgctt tttgtatatt ctgcataatt
      301 cgtccctgca tggcgccaat ataagttcta cgatgtccgc gtatctcagc ctcatcatgc
      361 aaaccaccca atgaaatgcg aacgtacttt cggtttaatg ctgtggctat agatttaccc
      421 aacgaagttt ttccaactcc cggagggcca tacaaacaaa caattggaga tttcatatct
      481 cccttcaatt ttagaacagc taaatgttcc aaaatacgat ctttgaccgt ttccatgcca
      541 aaatggtcct tatcaagtac tttcttggca tttttcagat taaaattatc ttttgtatat
      601 tcattccagg gtaaatccaa catagtttct acgtagttga gttgcgtaga ataatccggc
      661 gaatgctggc tggtacgttc cagtttcttt aattctttat caaatgcctt tgcaacggca
      721 tcattccatt tctttacttt cgcacgttct ctgaaatctg caacatcttc ttccgctgaa
      781 cctccaccca actcattttg aatggttttc atctgttgtt gtaagaagta ctcacgctgt
      841 tgttggtcaa ttccttcttt ggctttattt tgaattgata gctttatttc cagtaattgt
      901 gactctttat tcaataattc caacaactga tagccgcgct ccatcacttc atctatttcc
      961 agtaagcgct gtttttcttt tacgtttaac ccaaaattaa cgcaaacata attgataaga
     1021 aaaataggat tttcaatatt tcttatggca aaagccattt caggcgacat agccccggag
     1081 ttattgatta tgttcgtagc taaatcttta atggaagaaa ccagcgcctg aaacaaaccg
     1141 tcatttggat cagggaaaat atcttcaacc aaattgacct tcgctttcat gtagggctta
     1201 actgactcaa gttctcccaa cataaaacga cgcttgcctt ccaaaataac agttgttgta
     1261 ttatcaggca tttccagaat acggactacc tgggccactg ttcccatcgg ataaagctgc
     1321 tctatagttg gatcttcaag ttttttatca atttgcgaac acactccgat aagcaagtca
     1381 ttttcatggg ctgcacgcac taacttcaac gattttggac gggcaacaga aactggcaat
     1441 aaaacacccg gataaagaac catatttctc aatggcagaa ttggaagaac gtctcctgaa
     1501 attatactca actccgatga acgctcatca agcgaaatta ttggaaacat ctctgtagag
     1561 ccaggcatat cttcagaaaa aaaattatca aaaggattac tcattattaa acggtattta
     1621 aactgccaat ttggcacaaa tcttatttta gtatttttac ttcatttcaa ctaaaactat
     1681 atatcactta tattaaacaa cttatagttt taattacaaa aggtagtatt atcatttcaa
     1741 tagctatgcc aaaacgaatc tctgccatta tatctcagtt tgccaaataa cgaatttgag
     1801 tctgaatttt agaatcaagc tgtatacttt ttccttaata taaaattgaa gtaataaact
     1861 ttttgttcta aaaaaaagct acaaatcaga tgattgttta aaattctgac caaaagattt
     1921 accagtcatc tcatcaatgc ttacacgcca aacctttacg ttcatcagcg caggagtaga
     1981 atatttaaac ggacggtcag tataattttt catcaacaaa ttcatcagtt ctgttttttc
     2041 catcatatca tcaacaaacg ttacagcgcc tttacaaaga acgcttttcg atgtcatact
     2101 gtaactacaa gccacatcgg gatgttgata t
//
LOCUS       DATDNM010000842         2461 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_313884, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000842 DATDNM010000000
VERSION     DATDNM010000842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2461)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2461
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313884"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..259)
                     /locus_tag="VI413_14070"
     CDS             complement(<1..259)
                     /locus_tag="VI413_14070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005941162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HEY6915799.1"
                     /translation="MSKGKEVKPHIGIFGRRNNGKSSFINLLVGQDLAAVSSLPGTTT
                     GPENKSVEIFGIGPAILIDTAGIDDTGELGEKRIKKTMEVIK"
     gene            655..1332
                     /locus_tag="VI413_14075"
     CDS             655..1332
                     /locus_tag="VI413_14075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007559482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b subunit"
                     /protein_id="HEY6915800.1"
                     /translation="MWLIDSSIGRKLIMSITGVFLVLFLLFHSCMNIVVIISPEAYNA
                     ICAFLGANWYAIVGTSVLAAGFVIHILYAFLLSYQNLRARGPERYAMKKNQAGVSWAS
                     RNMLILGAVVFGFLALHMYNFWFKMQFAELSGIHTGNFEPSKGAEYVIELFSNKVYCI
                     IYIVWLAALWLHLTHGIWSALQTTGLNNKTWLPRVKVISNIISTIVILMFMSIPVYFL
                     LGCGAGC"
     gene            1371..>2461
                     /locus_tag="VI413_14080"
     CDS             1371..>2461
                     /locus_tag="VI413_14080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6915801.1"
                     /translation="MAKKEQSTEVDATKIDARIPEGPLAEKWSNYKAHQKLVNPANKR
                     RLDIIVVGTGLAGASAAASLAELGFNVLNFCIQDSPRRAHSIAAQGGINAAKNYQNDG
                     DSVYRLFYDTIKGGDYRAREANVYRLAEVSNSIIDQCVAQGVPFAREYGGLLDNRSFG
                     GAQVSRTFYAKGQTGQQLLLGAYSALSRQIGKGAVKLYSRYEMLDVVVIEGRARGIIA
                     RNLVSGKIERFFAHAVVVGTGGYGNTFFLSTNAMGSNGSAAVQMYKKGAYFANPAYAQ
                     IHPTCIPVHGDYQSKLTLMSESLRNDGRIWVPKKKEDAEAIRAGKKKATDLKEDERDY
                     YLERRYPAFGNLVPRDVASRAAKERCDAG"
BASE COUNT          710 a          525 c          489 g          737 t
ORIGIN      
        1 tcttgattac ctccatcgtt ttcttaatcc ttttttcacc caactcaccc gtatcatcga
       61 ttccggctgt atcaataagg attgccggac cgatgccaaa aatttcgacc gatttatttt
      121 ccggaccggt tgtagtaccc ggcaggctgg acacagcagc caagtcctgc cccaccaaca
      181 gatttatgaa agaacttttc ccgttgttcc gacgaccaaa aatcccgata tgtggtttca
      241 cttcttttcc tttgctcata tccttatttc gtaactgtaa aaaatttacg gctaatcatt
      301 caatttcaca gtcctacacg gaaattaacc tgcattcctt ttatttcgta acaaaataat
      361 tatcatcaaa gtttaaacac aaaacacctt taataaaaaa tatacgccgc agttgagctg
      421 tatttttata aattttcctt ctgtaaaatt gcaacacaat aaaaaaatac cataaacaac
      481 taattatcaa aataataact caattaaaga attttttcct tatttttggt atttcaaaat
      541 caaatgacta attttgtgga acttttccat aaatatcaga catttcgtaa cattttgaca
      601 gacattgatt tataattaca aactactaaa tattacaaac taaaacaaaa atctatgtgg
      661 ttaattgatt cctctattgg gcgaaagctt attatgagta tcacgggagt ttttctcgtg
      721 ttgtttttgc tttttcacag ttgtatgaac atcgtggtga taatttcgcc cgaagcttac
      781 aatgcaatct gtgcattttt gggagccaac tggtatgcaa ttgtcggaac cagtgttttg
      841 gcagcaggat ttgtgattca cattctgtat gcattcctgc tttcgtatca aaacctgcgt
      901 gcccgtggcc cggaacgtta tgcaatgaaa aaaaatcagg ctggtgtttc atgggcatca
      961 cgtaacatgc tgatacttgg tgcagttgta ttcggattcc ttgcattgca catgtacaac
     1021 ttctggttca aaatgcaatt tgctgaatta tccggcattc acaccggaaa cttcgaacca
     1081 tcaaaaggag ctgagtatgt aatagagttg ttcagcaaca aggtatattg cataatttac
     1141 atcgtatggc tagctgctct ttggttgcac ctaacccacg gtatctggag tgcattgcaa
     1201 acaaccggct tgaacaacaa aacatggtta cctcgtgtaa aagtgatttc aaacatcatt
     1261 tccactattg tgatcctgat gtttatgtct attccagttt attttctctt aggctgcggt
     1321 gctggctgct aaattgaaca ttctaaatcc taaaattgta aaatcagatt atggcaaaga
     1381 aagaacaatc taccgaggta gatgcaacta aaatagacgc ccgcattcca gaaggaccgt
     1441 tggccgaaaa atggagtaat tataaagcac accaaaaact ggttaaccct gccaacaaac
     1501 gtcgtttaga cattattgtg gttggtaccg gattggctgg ggcttcagcc gcagcatcac
     1561 tggctgaact tggtttcaat gtattgaact tctgtattca ggattctcca cgtcgtgcgc
     1621 actcaatcgc tgcacaggga ggtatcaatg ctgctaaaaa ctatcaaaat gatggtgact
     1681 cggtttaccg tcttttctac gatacaatta aaggcggcga ctaccgtgcc cgcgaagcca
     1741 atgtgtatcg tttggccgaa gtatcaaaca gcattatcga ccaatgtgtg gctcagggag
     1801 ttccatttgc acgcgaatac ggaggtttgt tagacaaccg ctcgtttggt ggcgcacagg
     1861 tttcacgtac gttctacgca aaaggacaaa caggacaaca attgttgctg ggagcttatt
     1921 ctgcattgag ccgccagatt ggcaaaggcg ctgtgaaatt atattcacgc tacgaaatgt
     1981 tagatgtagt tgtaattgaa ggccgtgccc gcggtatcat tgcccgcaac ctggtttcag
     2041 gtaaaatcga acgtttcttc gctcacgctg tagttgttgg aacaggtggt tacggaaata
     2101 ctttcttcct ttctactaac gccatgggtt caaacggatc ggctgctgtt cagatgtata
     2161 aaaaaggagc ttatttcgca aatcctgctt atgctcagat ccatcctact tgtattcctg
     2221 ttcacggcga ttaccaatcg aaactgactt tgatgtctga atcattgcgt aacgacggtc
     2281 gtatctgggt tccaaagaaa aaagaagatg ctgaagctat ccgtgcagga aagaaaaaag
     2341 caactgacct gaaagaagac gaacgcgatt attatttgga gcgccgttac cctgctttcg
     2401 gtaacctggt tccacgcgac gtagcttcac gtgctgctaa agaacgttgc gatgccggtt
     2461 a
//
LOCUS       DATDNM010000843         4387 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2023268, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000843 DATDNM010000000
VERSION     DATDNM010000843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4387
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2023268"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2436
                     /locus_tag="VI413_14085"
     CDS             <1..2436
                     /locus_tag="VI413_14085"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEY6915802.1"
                     /translation="GIANGSNMIFDHVSVSWGLDENFSINWDGKGSEPNNITIQKSII
                     GQGLMVHSAGGLIQTSGGITIYKNLYIDNKTRNPKVKGLNQFANNIVYNWGSGGGYIL
                     GGESEGPSWGVIENNYFIKGPSTGGTDAFVRGNANFQAYNKENMLDYNLDGVLGGAVA
                     PDSVLGPVTIVNSYGSFSNAPGTHPTLNNVLSPTAMYNWALDSVGACIPSRDEVDKYM
                     INELKSLGTTGALINAEADLGLPGGVGYVFSATKQADTDNDGMPDSWEDANGLNKNLA
                     SDALLTNADGYLNIEHYINGITAGQVYVKYPNLIAVKAIGTDFITLKWTNNASVATAI
                     ALEQSSDNVNFTEIARLDPALAEYKISGLSQITTYYYRLKTINGTVESLYSESLKVKT
                     LGAASAPIACTDPVPANQAVITSYTQTTLSWTNLTGNFGGVLHYDVFAGTSPDSLVMV
                     ADSIVGVSCTLNIVPSKTYYWRVDAINYFGSQQGDLWSFITSGKKPEREKVAYWPLNE
                     TSGTTAANEIYGFATAQNFTPTWGAGKTDNCVTIPASPTNAALVQSHYDAISLGAESF
                     TVEMWFKSSGGAVDWYLIHKGSHVKNTTTGATGKWFGVQYNKTGSNDRLTWGIDDDVT
                     KTFIDVKPGSTYFNNTWNHLVCIRDVTADKLYVYINGVLKGSTTDNTGNIAETENIIL
                     GNTNVAFVNAFGGSIDEVSIYKGVLTPEEIVDNYQKGLKTGFGNASYNSNVDVYPLPF
                     KDKLTIKSDELEGSMAQVKLYSTTGQLVFSNMATIENSRIEITGLESLKTGVYICSLK
                     SKNDKQISFKVVK"
     gene            2657..>4387
                     /locus_tag="VI413_14090"
     CDS             2657..>4387
                     /locus_tag="VI413_14090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008762223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6915803.1"
                     /translation="MRTTIHIIGLLLLTTTLFAQQTETQYLSGTGLGNEKVWKFYCTA
                     GMNSKKWSKIKVPSQWELQGFGEYTYGRWYKRGLKNPSMEQGFYEYTFSVPATWKNKQ
                     ISIVFEGSMTDTEVKINGQLAGETHQGGFYKFSYDITDKLKVGGKNKLEVKVSKHSEN
                     KSVNGAERRADWWLFGGIYRPVYIEAKPQIHIEHIAVNAQMDGKLSANIYTTPLPASY
                     SVSSSIAPLKGNGRFEVQNGTLQANVSSQQITASWKNVANWTPETPNLYNLKLELRNE
                     KNEVVHVYSERIGFRTVEFRRQDGIYVNNVKIVMKGTNRHSFYPDGGRTTNKEISLQD
                     VKLIKEMNMNAIRSHYPPDKHFLDMCDSLGLFYLDELAGWQNAYDTETGKKLVKEMVE
                     RDVNHPCIVLWDNGNEGGWNTKLDGEFAKYDPQKRHVIHPWADFDGLDTHHYPAYQTG
                     VARFTNGHNVFMPTEFAHGLYDQGNGAGMEDFWNKYTESPLFAGGFTWAFADEAVRRS
                     DKNGFIDSDEFNAPDGILGPYREKEGSFYTIREVWSPIQIKPILITPSFNGDIFVSNK
                     YLYNKLGGCTL"
BASE COUNT         1411 a          863 c          985 g         1128 t
ORIGIN      
        1 ggaattgcaa atggcagcaa tatgattttc gaccatgttt cggtttcgtg gggattggat
       61 gaaaatttct ctatcaattg ggatggtaaa gggtcagaac caaacaatat cactatacaa
      121 aaatcaatta ttggccaggg actaatggta cactctgctg gaggtttaat tcagacttca
      181 ggtggaatta cgatttataa aaacctgtat atcgataata aaacccgtaa tcctaaagta
      241 aaagggttga atcagtttgc caacaatatt gtttacaact ggggatcggg cggtggctac
      301 attttgggcg gtgagtccga aggtccatca tggggagtta tcgaaaacaa ttattttata
      361 aaaggtccga gcacaggcgg cacagatgca ttcgtgcgcg ggaatgccaa cttccaggca
      421 tataacaaag aaaacatgct cgactataat ctggatggag tacttggtgg agcagtggca
      481 ccagacagtg tacttggtcc ggtaactatt gtaaattctt acggttcgtt cagcaatgct
      541 cccggaactc atccaacatt aaataatgta ctgagcccga cagccatgta caactgggca
      601 ctcgacagtg ttggggcatg catcccgtcg cgtgacgaag ttgacaaata catgattaac
      661 gaactaaagt cgcttggaac aaccggagca cttataaatg ccgaagccga cttaggtttg
      721 ccgggtggag ttggatatgt attttcagca acaaaacaag cagatacgga taatgacgga
      781 atgcctgaca gctgggaaga tgcaaacggt ctgaataaaa atctggcttc ggatgcactt
      841 ctgacaaatg ctgatggata tttgaatatt gaacattata tcaatggaat tactgccggt
      901 caggtctatg taaagtatcc aaatttgatt gcagtaaaag ccattggaac agattttatt
      961 accctgaaat ggacaaataa tgcctcggtt gccacagcta ttgcgttgga acaatcgtcc
     1021 gacaatgtaa attttacgga aattgcacgc cttgatccgg ctttggctga atacaaaatc
     1081 agtggtttat ctcagattac aacgtattat taccgcctga aaactattaa tggaacggtg
     1141 gaatcgttgt attcagaatc attaaaagta aaaacactgg gagcagcttc agctccgatt
     1201 gcctgcacag atcctgttcc ggccaaccaa gcggtgatta cttcatatac ccagaccaca
     1261 ctgagctgga caaacctgac aggtaacttt ggaggcgtgt tgcattacga tgtttttgca
     1321 gggacttcac ctgattcatt ggtaatggtt gccgatagca ttgtaggtgt tagttgcacg
     1381 ctcaatattg ttccatccaa aacctattac tggcgggtag atgcaatcaa ttactttggc
     1441 agtcagcaag gcgatttatg gtcatttatt acttcaggca aaaaaccgga acgcgaaaaa
     1501 gtagcatact ggccattgaa tgaaacatcg gggactacag ctgcaaatga aatttacgga
     1561 tttgccactg cgcaaaattt cactccaaca tggggagccg gaaaaactga caactgtgtg
     1621 acaattccag ctagtccaac aaatgcggca ttggtgcaaa gccattacga tgccatcagt
     1681 ttgggtgcag aatcattcac tgtagaaatg tggttcaaat cttcgggtgg agcagtcgac
     1741 tggtatttaa tccataaagg aagccatgta aaaaacacaa ccacaggtgc aaccggaaaa
     1801 tggtttggcg tacagtacaa taaaaccggt agcaacgacc gtctgacctg gggtattgac
     1861 gacgatgtaa ctaaaacctt tattgacgta aaacccggat ctacgtattt caacaataca
     1921 tggaatcatt tggtatgtat ccgtgatgtg actgccgata aactttatgt ttatattaat
     1981 ggtgttttga aaggttctac aactgacaat accggaaaca ttgccgaaac ggaaaatatc
     2041 attttaggaa atacaaatgt tgcttttgta aatgcattcg gaggttcaat agatgaggtt
     2101 tctatttaca aaggagtact tactcccgaa gaaattgtgg acaactacca aaaaggattg
     2161 aagacagggt ttggaaacgc ttcgtataat tctaatgtcg atgtctatcc attgccattc
     2221 aaagacaaac tgacaattaa atcagacgaa ttggaaggtt caatggcaca ggttaagctt
     2281 tactcaacca ccggccaact tgttttctca aacatggcaa cgattgaaaa tagccgtatc
     2341 gaaattaccg gactagagtc attaaaaact ggtgtttaca tttgctccct gaaatcaaaa
     2401 aatgataaac agatatcatt caaagtggta aaataaaaaa cgtctaaata ggaatatgag
     2461 ttcggataaa aagaattgct gcaatgcaag gctttttatc cgaatacatt ttagaccaaa
     2521 atcttatttc attaaaattt gtacaacttc attggcaatt attcatattg agcatgaaca
     2581 acgcacatag tttttagtat ataaattgat ttgtttagat ttgtgtatca tttgataaac
     2641 aaacacgaaa aataatatga gaactacgat tcacatcatt ggattattac tgctcaccac
     2701 cactcttttt gcgcagcaaa ccgaaacaca atacctgtcc gggactggtt tgggcaatga
     2761 aaaagtatgg aaattctatt gcaccgctgg catgaacagc aaaaagtgga gcaagataaa
     2821 agtgccatcg caatgggagc tgcagggatt tggggaatat acctacgggc gttggtacaa
     2881 gcgcggactt aaaaacccga gcatggaaca aggtttttat gaatatacgt tttctgttcc
     2941 tgctacttgg aaaaacaaac aaatctccat cgttttcgaa ggctccatga ccgacaccga
     3001 agtaaagata aacggacagt tggctggtga aacccatcag ggtggttttt ataagttttc
     3061 atacgatata accgacaagc tgaaagtggg tggcaaaaac aaactggaag tgaaggtttc
     3121 aaaacattcc gaaaacaaat cggtaaatgg agccgaacgc cgtgccgatt ggtggttgtt
     3181 tggaggcatc tatcgtccgg tttatattga agcaaaacca caaatacaca tcgaacacat
     3241 tgcagtaaat gcgcaaatgg acggtaagct gagtgctaac atttacacga ctcccctacc
     3301 cgccagttat tcagtttcat caagtatagc accactaaaa ggcaatggca gatttgaagt
     3361 gcaaaatggc acattgcaag caaacgtgag ttcgcaacaa atcacagcca gctggaaaaa
     3421 cgttgcaaac tggactcctg aaactcccaa tctgtacaat ttaaagcttg aactccggaa
     3481 cgaaaaaaat gaagttgttc atgtttatag tgaaagaata ggtttcagaa ccgttgaatt
     3541 ccgtcgccag gatggtattt acgtcaacaa cgtaaaaata gtaatgaaag gaacaaaccg
     3601 tcactcgttt tatccggatg gcggacgaac caccaataaa gaaatcagtt tacaagacgt
     3661 aaagctcatc aaagagatga acatgaacgc tatacggtcg cattatccgc ctgataaaca
     3721 ttttctggat atgtgcgact cgttgggact gttctattta gacgaactgg caggctggca
     3781 aaatgcttat gacacggaaa ccggaaaaaa actggtaaaa gaaatggtag aacgtgatgt
     3841 gaaccatccg tgcatcgtgc tttgggacaa tggaaacgaa ggaggctgga atacaaaact
     3901 ggacggcgag tttgcgaaat acgatccgca gaaacggcat gttattcatc catgggccga
     3961 tttcgatggt ttggacacgc accactatcc cgcataccaa acaggggtgg cgcgcttcac
     4021 caacggacac aatgtgttta tgcctaccga gtttgcacat ggattgtacg accagggcaa
     4081 tggtgccggc atggaggatt tctggaacaa atacaccgaa agtccgctgt ttgcaggcgg
     4141 gtttacctgg gcatttgccg atgaggccgt gcgtcgttct gacaaaaatg gatttattga
     4201 ctccgatgaa ttcaatgcac cggacggcat tctcgggccc tatcgcgaaa aggaaggaag
     4261 cttttatacc attcgcgagg tgtggtcgcc cattcaaata aagccgatat tgattacgcc
     4321 ctcattcaat ggagacattt ttgtgagtaa caaatacctg tacaataaac tgggaggttg
     4381 cacgctg
//
LOCUS       DATDNM010000844         2032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2023293, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000844 DATDNM010000000
VERSION     DATDNM010000844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2023293"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VI413_14095"
     CDS             complement(<1..198)
                     /locus_tag="VI413_14095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011966513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEY6915804.1"
                     /translation="MKKILLVFGTRPEAIKMAPLVNEFKKKTEYFKTIVCVTGQHRQM
                     LDQVLSLFEITPDFDLDIMKKD"
     gene            complement(219..938)
                     /locus_tag="VI413_14100"
     CDS             complement(219..938)
                     /locus_tag="VI413_14100"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013613170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6915805.1"
                     /translation="MSKIFIIDNSPTKQKALDNLQVNYIFTGKNLGYGAAHNIAIRQT
                     IDQNIPYHLVINPDISFNPQILDTIVEFMNDNSTIGQLMPKVFYQKGEIQYLCKLIPT
                     PSDLIFRRFLPTKWTKQRTEKFELRRSGYNQILDVPYLSGCFMFLRTDALKEVGLFDE
                     RFFMYPEDIDLTRRIHAKYRTVFYPEATIIHHHAQDSYMSLKMLGIHVANMIKYFNKW
                     GWIFDSERKRINIETLKQFQK"
     gene            complement(916..>2032)
                     /locus_tag="VI413_14105"
     CDS             complement(916..>2032)
                     /locus_tag="VI413_14105"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY6915806.1"
                     /translation="EDEYSTLFQNEKIEFISIQIEGKGKSILKDIKLIYQLISIYKTN
                     KIDFIFHYTIKPNIYGSIACSILNIPCVAITTGLGFSFNKFNLFNSFIKLLYRLSLKN
                     VIEVWFLNSNDKEIFNKNKIVLPEKAFILHSEGIDSTYYSPLLKSGESNKFIFLLLSR
                     LIKEKGIEEYVKAAEILKQKGIEVECQLLGKQEKESSHSISIEVVREWHNNGLITYLG
                     EFIDIRKYIANCDCVVLPSYYMEGVPRCLMEAMSMERPIITTDNVGCNELIIDKVNGL
                     ICESRNVDDLANKMEEMAKASAEKRNQFGKNGRKRILDYFDERKIVEQYHIKLNSFYP
                     NSYDKRINCIIQNPIKRNISINRDTAKIGKRVQNFHH"
BASE COUNT          603 a          338 c          335 g          756 t
ORIGIN      
        1 atcttttttc ataatatcta aatcaaaatc aggtgtaatt tcaaataagc ttaatacttg
       61 atccagcatc tgcctgtgct gcccggtaac acaaactatg gttttaaaat attctgtttt
      121 ttttttgaat tcatttacca acggagccat tttaatggct tcaggccgag tgccaaaaac
      181 taatagtatt ttcttcatta ttctaagaca aataaatttt atttttgaaa ttgttttaag
      241 gtttcgatat ttattctttt tctttcagaa tcaaaaatcc acccccattt gttgaagtat
      301 ttaatcatgt tcgcaacatg aattcctagc atttttaggc tcatgtacga atcttgagca
      361 tgatgatgaa taatggtggc ttcaggatag aatactgtcc ggtatttagc atgaatacgt
      421 cgggttaaat cgatgtcctc tggatacatg aaaaaacgtt catcaaacaa tcctacttct
      481 ttaagtgcat ctgttcgtaa aaacataaaa caacccgaaa gatatggaac gtcaagtatt
      541 tgattgtatc cggaacgccg cagttcaaat ttctccgttc tttgttttgt ccatttggtt
      601 ggcaaaaatc gcctgaaaat caaatcgctt ggtgtcggaa tcagtttaca aagatattga
      661 atttctcctt tttgataaaa tacttttggc attaactgcc caattgttga attgtcattc
      721 ataaattcaa cgatagtgtc gagtatttgt gggttaaagc tgatgtctgg gtttataacc
      781 agatgatagg gaatgttttg gtctatcgtt tgacgaatgg caatattatg agctgcaccg
      841 taaccaagat ttttaccagt aaatatatag ttaacctgta gattatcgag tgctttttgt
      901 tttgttgggg agttgtcaat gatgaaaatt ttggacacgc ttgccgattt ttgcagtgtc
      961 tctattaatg gaaatatttc ttttaattgg gttttgtata atacaattga tacgtttatc
     1021 ataggaattg ggataaaagg aattaagttt aatgtgatat tgttcaacta tttttctttc
     1081 atcaaaataa tcaagaattc gctttctgcc attttttcca aattgatttc ttttttcagc
     1141 acttgctttt gccatttcct ccatcttgtt ggctaaatca tctacatttc tagattcaca
     1201 aatcaggcca ttaaccttgt cgatgattaa ctcattgcaa cctacattgt cagtagttat
     1261 tatggggcgt tccatactca tagcttccat tagacagcgc ggaacacctt ccatataata
     1321 cgagggtaaa accacacagt cacaattcgc aatatatttt cggatatcaa taaactcccc
     1381 gagatatgtg ataagcccat tgttgtgcca ttcccttaca acttctattg aaatactatg
     1441 agaactttct ttttcttgct tcccgagcaa ttggcactca acctcaattc ctttttgttt
     1501 tagaatttct gctgctttga catattcttc aattcccttt tccttgatta atctcgaaag
     1561 aagtaagaat ataaatttat ttgactcgcc tgatttgagt aacggtgaat aatatgtgga
     1621 gtcaatgcct tcgctgtgta aaataaaggc tttttccggc agaacaatct tatttttatt
     1681 gaaaatttct ttgtcgttcg aatttaaaaa ccatacctca atgacatttt ttagagaaag
     1741 tctataaagg agttttatga aactgttgaa aagattgaat ttgttaaatg aaaagccgag
     1801 acctgttgtt atcgccacac atggaatgtt aaggatgctg catgcgatag atccgtatat
     1861 gtttggtttt atagtataat gaaagatgaa atctatttta ttagttttgt aaatgcttat
     1921 tagttgatag ataagtttta tatcttttaa aatgctttta cctttacctt caatttgtat
     1981 tgaaataaat tcaatttttt cattctgaaa tagggtggaa tattcatctt ca
//
LOCUS       DATDNM010000845         2936 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_847463, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000845 DATDNM010000000
VERSION     DATDNM010000845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_847463"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..972
                     /gene="arsB"
                     /locus_tag="VI413_14110"
     CDS             <1..972
                     /gene="arsB"
                     /locus_tag="VI413_14110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008490 - arsenite secondary active
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACR3 family arsenite efflux transporter"
                     /protein_id="HEY6915807.1"
                     /translation="IGVFAGWLSPSVADFWNSFSVGTTNIPIAIGLVVMMYPPLAKVK
                     YEELGDVFRNTKILGLSLVQNWIIGPVLMFLLAIVFLQFNIDYMYGLILIGLARCIAM
                     VIVWNDLAKGDRQYAAGLVAFNSIFQVLFFSVYAWFFIAVLPGWFGLPVNDSVAKITM
                     GEIAKSVFFYLGIPMIAGFLTRYIGIKLKGKTWYETKLVPKISPLTLIALLFTIVVMF
                     SLKGEYIVKIPFDVVRIAIPLIIYFVIMFVGSFIMSKKAGANYEQSTTLSFTAASNNF
                     ELAIAVAIAVFGINSGEAFTAVIGPLVEVPVMIALVNVAFWFKKKMF"
     gene            complement(988..1428)
                     /locus_tag="VI413_14115"
     CDS             complement(988..1428)
                     /locus_tag="VI413_14115"
                     /inference="COORDINATES: protein motif:HMM:NF021435.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2141 domain-containing protein"
                     /protein_id="HEY6915808.1"
                     /translation="MNVMKSFYSILVAFVLSSQITSSQTLDVHVKDIKSAKGQICIAI
                     FADAAGFQSEKTIWETKYAKKLVTNGNLDLTIPLRAGKYGLSVLDDENMSGKMEYNLF
                     GIPLEGFGFSNYYHRGFCKPSFDDFSFVVEKDEVVCVTVYMKYF"
     gene            complement(1460..2503)
                     /locus_tag="VI413_14120"
     CDS             complement(1460..2503)
                     /locus_tag="VI413_14120"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6915809.1"
                     /translation="MKTTVNILLNGASGTIGYEVLRQIVSHSDYKLTVFDKETRQSKK
                     LFTPYKDRINIVYGDLSNEDDVGRIQGNIDVAIHLAAIIPPLADEKPELTRRVNVDGT
                     QNIIRLLQKTSPGAFLLYSSSVAVYGDRIQNPYISVEDPLNARGEDIYAQTKITAENL
                     IRNSGLNWCIFRLTAIMKNHKMSKLMFHMPLSTRMEICTAADTARAFVEAIKHRAELA
                     QQVFNLGGGSQCYITYQEFLERSFRAFGLGKLNFPEHAFAERNFHCGIYVDGNKLEEI
                     LHFRSDTVDSYFVGVNRSVSSAKWLASSLFGPLIKHVLLLQSEPYKAYKTKNMSRMNL
                     FFFPESKVSAVRS"
     gene            complement(2741..>2936)
                     /locus_tag="VI413_14125"
     CDS             complement(2741..>2936)
                     /locus_tag="VI413_14125"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6915810.1"
                     /translation="LKIPKYQITEVLNTELGNNFFQFVNHYRVEAVKMMLSDPKNKYS
                     IEAIGYECGFSSKSSFYTVF"
BASE COUNT          870 a          629 c          561 g          876 t
ORIGIN      
        1 attggagttt ttgctggttg gttgagcccg tcagttgctg atttctggaa tagtttttct
       61 gttggcacaa cgaatattcc aattgctatt ggactggtag tcatgatgta tccgccacta
      121 gccaaagtaa aatacgaaga actgggagat gtgttcagaa acaccaaaat ccttggttta
      181 tcattggttc aaaactggat tataggaccg gtattgatgt ttttgttggc tatcgttttt
      241 ctgcagttca acatcgatta tatgtacggg cttatcctga ttggattggc gcgctgtatt
      301 gccatggtta ttgtatggaa cgaccttgcc aaaggcgacc gccagtatgc ggcagggctc
      361 gtggcgttca actccatttt ccaggtgtta tttttctcgg tttacgcgtg gtttttcatt
      421 gccgttttgc caggttggtt tggacttccg gtgaacgatt cagttgcaaa gattaccatg
      481 ggagaaattg ccaaaagcgt gttcttctat ctcggcattc cgatgattgc cgggtttctg
      541 acacgataca tcggaattaa actgaaagga aaaacctggt acgaaacgaa actcgtcccg
      601 aaaatttctc cgttgacctt gattgcattg cttttcacaa tagtggtgat gttctcactg
      661 aagggagaat atattgtgaa aattccattt gacgtagttc ggatagccat tccgctgata
      721 atctactttg tgattatgtt tgtgggctca ttcattatga gcaaaaaagc cggtgctaac
      781 tacgaacagt ccactaccct atcctttaca gccgccagta ataattttga gttggctatt
      841 gctgttgcca ttgctgtttt cggcattaac tccggcgaag cttttacagc agttatcggc
      901 ccattggtag aagttccggt tatgattgcg ttggtaaacg tagcattttg gtttaaaaag
      961 aaaatgttct aaaaaagaac aacaacatta gaaatacttc atatacaccg ttacacatac
     1021 aacttcatct ttttcaacaa caaaactaaa atcatcaaaa gacggcttac aaaatccgcg
     1081 gtggtaataa tttgaaaatc cgaaaccttc aaggggaata ccgaacagat tgtactccat
     1141 ttttccactc atattttcgt catcgagtac cgacaaccca tactttccag cccggagcgg
     1201 aattgtaaga tcaaggtttc cgtttgtaac caacttcttt gcatatttcg tttcccaaat
     1261 agttttttcg gactgaaacc cggcggcatc ggcaaaaatg gcaatacaaa tctgcccctt
     1321 tgcactcttt atatctttaa catgaacgtc aagtgtttgc gaagaagtaa tttgcgaaga
     1381 caaaacaaac gcaactaata tactataaaa actcttcatc acattcatgc cggctaatct
     1441 ttaaacactg agacgaacat tacgaccgaa cagcagaaac cttgctctcc gggaagaaga
     1501 acagattcat ccggctcata tttttcgttt tataagcctt atatggttcg gattgaagta
     1561 gcaggacatg tttgattagc ggaccaaaca aagaactcgc caaccatttt gcagaagaaa
     1621 ccgaacggtt gacacccaca aaataactat caactgtgtc gcttctgaag tgaagaattt
     1681 cttccagctt attgccatcc acgtaaattc cacaatggaa attacgttcg gcaaaagcat
     1741 gttccggaaa gttcagctta cccaagccaa aagcgcgaaa cgaccgttcc aaaaactcct
     1801 ggtaagtaat gtaacattga ctgccgccac ccaggttaaa aacctgctgc gccaattctg
     1861 cacggtgttt aatagcttcc acaaaagccc gggcagtatc agccgccgta caaatttcca
     1921 tccgcgtaga taaaggcatg tgaaacataa gtttcgacat tttatgattc ttcataatgg
     1981 ctgtaagccg aaaaatacac caattgagtc cggaattccg gattaaattt tccgccgtaa
     2041 ttttagtttg tgcataaata tcttctcccc tggcattcag tggatcttcc actgatatat
     2101 acggattttg gatacgatct ccataaactg ccactgaaga actataaagc aaaaatgctc
     2161 ccggcgatgt tttttgaagc aatcgaataa tattctgcgt tccatccaca tttacccgcc
     2221 gggtcaactc cggcttttca tcagccagcg gtggaataat agctgcaagg tgaatagcaa
     2281 catcgatatt tccctgaatc cggccaacat cgtcttcatt gcttaaatca ccgtaaacaa
     2341 tattaatccg gtctttgtac ggtgtaaata atttcttcga ctgacgggtt tccttatcaa
     2401 aaacagtcag tttatagtcg ctgtgagaga ctatctgacg taatacttca tatcctattg
     2461 tgcccgaagc tccgtttagc aatatgttta cggtcgtttt catttcaata gcaattattg
     2521 gttgaacaga ttgataaaaa tgaatcggaa tgcgcacatc ggccattcca tttccttaca
     2581 attataatcc atttcaatga aaaaacagtc cgaatttcaa aatcaggata acaacatccg
     2641 gttcgacttt tgaaaatcaa actctctgca aacaaaataa aaaaaatgat tattgtagga
     2701 ttgtactccg gtacgaaacg ggcgtttctc cggttatttc ttaaaaaaca gtataaaacg
     2761 aagatttact ggaaaagcca cactcgtagc caatagcttc tatggaatac ttatttttag
     2821 gatcggatag catcattttc accgcttcaa ccctataatg gttgacaaac tgaaaaaagt
     2881 tattgccaag ctctgtattc aatacttccg ttatctgata ttttggaatt ttcaac
//
LOCUS       DATDNM010000846         2550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_954274, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000846 DATDNM010000000
VERSION     DATDNM010000846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_954274"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1110)
                     /locus_tag="VI413_14130"
     CDS             complement(<1..1110)
                     /locus_tag="VI413_14130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HEY6915811.1"
                     /translation="MNKYTNSEEEFEQPIDFLGHFVKYLSYWKWFVASLILCVGVCFL
                     YLWFTLPSYEITTTILLKDDQKGGGTAESNAFKEMGLFTQKNNVDNELEVLNKSILIQ
                     QVVRELGIYATYTQIGTFELFDNFGINTKKTSFAKFKQKSIYGEECPVLVSLPDTVLK
                     NMTFAVQFEVLVHPYGEYEFFGRYMDKEFSVKASISDAQVVLPFGKIYLQRGKFRPTK
                     DMLVEIILQSPLSKADEIMGQIKMELTSKTTSVVQMKIKSSNVKLGVDILTKLVEVYN
                     REDLQDQTEMANRTARFIDERLMSLTRDLGDVESQVENYKQVQGITDIKSQTDMFIQQ
                     TGDFTQKRLEVETQLAIVTDIDNYIHRPENRYQLLP"
     gene            complement(1220..1993)
                     /locus_tag="VI413_14135"
     CDS             complement(1220..1993)
                     /locus_tag="VI413_14135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019541279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HEY6915812.1"
                     /translation="MKNIAYFQRLNGSDQLTQDNKTAGSNAQSKNSNNLYEARIKPKD
                     ILSITVVSSEPEASRMYNLVVPQVAQSSYQTQLMSEPALQTYLVDNDGNIEFPVFGEI
                     KVKGLTRRELEQVLHNKLASAFSKEIPIVTIRFENYSVNILGEVQSPGKYETKNDRLT
                     IFDGLALAGDLTIYGRRDNVKVLRERVDGSKMYITVNLNDRNIIFSPAYYLEQNDVVY
                     IEPNKSKSRSSNYGAAETFGISSLSVLLTLTSLIFTLVK"
BASE COUNT          876 a          467 c          365 g          842 t
ORIGIN      
        1 tggaagcagt tggtagcgat tttccggtct atgaatataa ttgtcaatat ctgtaacaat
       61 tgccaattga gtttccactt caagtctttt ttgtgtaaaa tcaccggttt gttgaataaa
      121 catatcagtc tgagacttaa tatcagttat accctgaact tgtttataat tttcaacttg
      181 cgattccaca tcacccagat ctcttgttag cgacataagt cgttcatcta taaaacgggc
      241 agttcggtta gccatctcag tttgatcttg caaatcttcc cggttgtaaa cttctactaa
      301 tttggtcaat atatcgacac caagttttac attagaagat ttgattttca tttgcaccac
      361 agaagttgtc ttagaggtga gttccatttt aatctgcccc attatttcgt cggctttact
      421 gagagggctt tgcagaataa tctctaccaa catgtccttt gtaggcctga acttacctct
      481 ttgcaaataa attttaccaa atggcaatac tacttgagca tctgaaatag aagcttttac
      541 actaaattct ttatccatat aacgaccaaa aaactcatac tccccatacg gatgaactaa
      601 aacctcaaat tgcacagcaa aagtcatatt tttgagtact gtatctggca ggctcacgag
      661 aacaggacac tcttctccat aaattgattt ctgtttgaat tttgcaaagc tcgttttttt
      721 tgtatttata ccgaaattat caaataattc aaatgttcca atttgagtat aggtggcata
      781 aattcctaat tcacgtacaa cttgctgtat caaaatagac ttatttaaca cttccagttc
      841 attatcaacg ttgttttttt gagtaaaaag ccccatttct ttgaacgcat tcgattcagc
      901 tgtacctcca cccttttgat catcttttag caaaattgta gttgtaattt cataactagg
      961 tagtgtaaac cacagatata gaaaacaaac accaacacat aaaattaggg aggcaacaaa
     1021 ccacttccaa tacgaaagat attttacaaa atgtcctagg aagtcaatag gttgttcaaa
     1081 ttcttcttcc gaattagtat atttattcat atcaatttaa attaatcata actaaaattt
     1141 tgctaaggat atcatcaaat gtaaagctgc tcacgttgta ttgaaaaacc agagaaacaa
     1201 taaaccggtc ttaactattt cactttacaa gagtaaagat taaactagtc agcgtcagca
     1261 aaacagacag ggatgaaatc ccaaatgtct cagcagcacc ataattagag gatctagatt
     1321 tcgacttatt cggctctata tacactacat cgttttgttc cagataataa gctggagaga
     1381 aaataatatt tctatcattt aaatttactg taatatacat ttttgagcca tctactcttt
     1441 cgcgcaacac ttttacatta tcacgccgtc cataaatagt caaatctccg gctaaagcca
     1501 aaccgtcaaa aatagtaagc ctgtcatttt tcgtttcata cttacccggg ctttgcactt
     1561 cgcctaaaat attgactgaa taattttcaa agcggattgt aacgataggt atttctttgc
     1621 taaaagcaga tgctagtttg ttatgaagaa cttgctctaa ttccctacgt gtcaacccct
     1681 ttaccttaat ttcaccgaaa accgggaatt ctatatttcc atcgttatca accaaataag
     1741 tttgtaatgc aggctctgac ataagttgag tttggtagga agactgggca acctgaggta
     1801 caaccaggtt atacatccta gaggcttctg gttctgaact cacaacagta atacttagta
     1861 tatccttggg ttttatacgt gcctcataca aattgtttga attctttgac tgagcattac
     1921 ttccagcagt tttgttatct tgagtcaatt gatcagaccc attaagcctt tgaaaataag
     1981 caatattttt cacttcagaa caagacagaa acagaaacag aaacagaaac aaacacagta
     2041 attgggtgat ttttgcgtaa aacataatta ataatttttg tgtggtcaaa atataacaat
     2101 aaaagctcag atggtcgaaa ttctaaaatg aaacttttat ttaatcagaa tacttgttat
     2161 ctatgaataa tttaacttaa gtagcaatct atctctgttt ataataatta ttaaatcaaa
     2221 ttacagtcat acatagttaa caaagattaa gtctaaaatg ttttaaactt aattaaaaaa
     2281 tctattttat ttactggaat tattgaatgt aaataattga ataatataat ttagaattta
     2341 aaaaaaaaga attaaacgaa gataagtatc aaatccattt gatactcatc ttattcatgc
     2401 aataataaga tacaagctgg atatgcggaa atccaagccc taccaatatg ttattcaaaa
     2461 attaattaag atatcgaaag aaaataatct atttacactc acataccgtt tcattttaat
     2521 acaacatact acagcaataa atacgcattt
//
LOCUS       DATDNM010000847         5550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1701846, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000847 DATDNM010000000
VERSION     DATDNM010000847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5550
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1701846"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /locus_tag="VI413_14140"
     CDS             complement(<1..564)
                     /locus_tag="VI413_14140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RlmF-related methyltransferase"
                     /protein_id="HEY6915813.1"
                     /translation="MSENKKDHPAEKTVLHPRNRHRERYDFKLLTTACPELVKYVKLN
                     PAGIETIDFANPKAVKWLNKALLKQYYSLAYWDVPTGFLCPPIPGRADYIHYIADLLG
                     NSNGGKIPTGYKIKCMDIGVGASCIYPVIGNKEYGWSFIGTDIEEAALESANKIITNN
                     AFLKRNIELRFQENPNDIFHGVMLRNEP"
     gene            881..2587
                     /locus_tag="VI413_14145"
     CDS             881..2587
                     /locus_tag="VI413_14145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004313825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6377 domain-containing protein"
                     /protein_id="HEY6915814.1"
                     /translation="MNKGIMSKTALLRIGLKKIVFIIPVVLFSVSANAQENLDSLLLK
                     LDETIEKSHIYIQKREERIKILKDELKKVRRNSIDEFNVNNQLFKEYKPYICDSALHF
                     QNRNIEIAKWLNDSRKEYESKMKVAFIMGSTGMYKEAVDLLATIDEKKLPGELLQDYY
                     YTYLKVYNELAFYTQDKKSSQNYWSVGAHYDKKLKRVIDKESDLYLQLKQDSVRNSRN
                     FSEALKINDIWLLHTTEGTADHALATFHRAVINLWKGDRSEYKHYLILSAISDIESAI
                     KDQASLRLIAEVLFEEGDIDRAYNYIRFSWNATVFYNAKLRSLQTAAILSMIDKTYQA
                     KIENQNSKLQNYLIIISSLLALLLIALLVIYKQIKRLSDTKLELLDANTELSQLNNQL
                     NTVNEELTSLNYTLNRTNNELSDSNKIKEVYIGRFIELCSVYINKIDDFRRKVYSKVK
                     DGKIKDSQIMSQSQDLMDEEFEELYRNFDNAFLQLFPDFIEKVNELMNENDKFVLKKG
                     ELLNPELRIIALMRLGINDGAKISLFLRYSLTTVYNYRTKTKNRTYLQKDEFDNKVLQ
                     IR"
     gene            2907..>5550
                     /locus_tag="VI413_14150"
     CDS             2907..>5550
                     /locus_tag="VI413_14150"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding protein"
                     /protein_id="HEY6915815.1"
                     /translation="MRKIYFFLILSIPFILHAQNGYVRASGKQIVDPLGSNLIIRSIG
                     TGNWMLQEGYMMQTSGVAGTQWEFRKKLTETIGAEKTNQFYTAWLANHFRKIDVDSMA
                     RWGFNCVRPALHYKLFTLPIEDEPVAGANTWLESGFARLDSLLAWCAANKMYVMLDMH
                     GAPGGQGKDAAIADYDISKPSLWESEANKAKLVALWRKIAERYATNKWIAGYDLLNET
                     NWTFAEGNNSQLRALYGRVTAAIREVDPNHMIVIEGNWFANDFSGLTPAWDSNMAYSF
                     HKYWTVNDVSIIKWVLDLRNSTNCPIWLGESGENSNRWFTDCIELMEKNNIGWSFWPV
                     KKSGINNVLKVTTNSDYTELINYWKGTAAKPTVDKAFQAVMTFADNHKLENCFVQRDV
                     IDAMIRQPQTTDTKPFRANTTASTIFAVDYDLGRAGYAYTDNVDADYHLSNNNYTAWN
                     NGYAYRNDGVDIENCSDAVTNGFHVGWVEDGEWMQYTIQSTEAMTYNVLLRYASQAAT
                     ARVYIEVNGKRASKTVSLSPSGSWTTWKTGAITNVIIPAGNVKVKIVFETGGANFNYF
                     QFRNPKSVDNTAFEMLSAETASWANQVTLKLNKAVETLVGNPFVVKIDGKEASIVSTT
                     VSSADKSNIDVVITEPILNTNVLTVDYNTNACTSGTQSLTTFQNQQIKNNIIAHQNIP
                     GKIEAENFAVNNGFSFETCTDTGAGTNTSYAAIDKYLDFYTWVANSGTYKMDFRISVN
                     SASAQIAVLKDVNGSLVPLKSVSFSNTGGWQNWQTQSATVALTAGKNIIRLLSRTDGY
                     NLNWIQFAQLTPVESPQTLNIALYPNPAQDSFFLQFNNENPRRIEILDLQGRLISHFV
                     SQLTFERVSVVGMKPGIYIVKISDN"
BASE COUNT         1746 a          974 c         1106 g         1724 t
ORIGIN      
        1 gggttcgttg cgaagcatta cgccatgaaa aatgtcattc gggttttcct gaaaacgcag
       61 ttcaatattg cgtttcagga atgcattgtt ggtaatgatt ttattggccg attccagtgc
      121 agcttcttca atgtctgttc ctataaatga ccagccatat tctttgttcc cgataacagg
      181 gtatatgcag ctggcaccta cgccaatatc catgcattta attttataac ctgtaggaat
      241 cttgcctccg tttgaattgc ccagcaaatc ggcaatgtaa tggatgtaat cggcccgtcc
      301 gggaatgggc ggacaaagga aacctgttgg aacatcccag tatgccagcg aataatattg
      361 tttcagcaaa gctttattca gccatttgac tgctttggga ttggcaaaat caattgtctc
      421 gatgcctgcc ggattgagct ttacatattt aaccagctca ggacaagctg ttgtgagcag
      481 tttaaaatca tagcgttccc gatgtctgtt tcgtgggtgt aaaacggttt tttcggcagg
      541 atggtctttt ttattttcgg acatatattg tagtgccaat aatttgattg actttacaaa
      601 agtagctaat tttcagccaa cttactattt ctgattcaaa taaacggaaa aattgttctt
      661 tatttactct tataaatgat aatacaaact attctgttta actgaatggc aattggtaat
      721 taactgtttt ttgtggataa tcaaatattt agtcttgtta taaatttaat attttgtttc
      781 tccttaaaac cttatactct tctcactaaa tattatttta tcaataactg ttaggctgtt
      841 gcagcaatta aattatattt gtacgaaaat cacggtaaat atgaataaag gaattatgag
      901 caagacggcg ttgttgagaa ttggattaaa aaaaatagtt tttatcattc cagttgtatt
      961 attttcagta tctgcaaatg cacaggaaaa tcttgattca ttgttattaa aacttgatga
     1021 aacaatcgag aagtctcata tttatattca aaaaagagag gaaaggatta aaatactgaa
     1081 agatgaatta aaaaaagttc gtcgaaattc aatagatgaa tttaatgtta ataatcagct
     1141 atttaaggag tataagccat atatctgtga ttctgccttg cattttcaaa acagaaatat
     1201 tgaaattgcc aaatggttga atgatagccg aaaagaatat gaaagtaaaa tgaaggtagc
     1261 ctttataatg ggctcaaccg gaatgtataa agaagctgtt gatttactgg ctactatcga
     1321 cgaaaaaaaa ctacccggag aacttttaca ggattactat tacacttatt tgaaagttta
     1381 taacgaattg gctttttaca cacaggataa aaaaagttct caaaattatt ggagtgttgg
     1441 cgctcattac gacaagaaac taaaacgggt tattgacaag gaaagtgact tgtatctgca
     1501 actgaaacaa gacagtgtac gtaattcgcg gaattttagt gaggcgttga aaattaatga
     1561 tatatggttg cttcatacca ccgaaggtac cgctgatcat gccttagcaa cgtttcaccg
     1621 agcagtaata aatctttgga agggagaccg atccgaatat aagcattatc tcatattatc
     1681 tgcaatttct gatattgagt cagccataaa agatcaggct tctttgcggt taattgccga
     1741 agttttgttt gaggaaggcg atattgaccg ggcttataac tacattcgtt tttcgtggaa
     1801 tgccactgtt ttctacaatg caaaattacg tagtttgcaa accgctgcca ttttatctat
     1861 gattgataaa acatatcagg ctaaaattga gaatcagaat agtaaacttc agaactattt
     1921 aataataata agttcgttat tggctttatt gctgattgca ttacttgtta tttacaaaca
     1981 aatcaagcgt ttgtcagata ccaaactgga attgctcgat gcaaacacag aattaagcca
     2041 gctcaacaac cagctaaata cagtcaatga agagttaaca tcgctgaact atacactcaa
     2101 tcggactaac aatgagttgt ctgattcaaa caagattaag gaagtttata tcggacgatt
     2161 tattgagctt tgctcagttt atattaataa aatagatgac ttcagaagga aagtttattc
     2221 gaaagtgaaa gacggaaaaa taaaagattc tcagattatg agtcagtcac aggatctgat
     2281 ggacgaagaa tttgaagagt tatatcgtaa ttttgacaat gcttttttac agcttttccc
     2341 ggactttatt gagaaggtaa atgaactcat gaacgaaaat gacaagtttg tacttaagaa
     2401 aggggagctg cttaatcccg aattacgcat tattgcgctg atgcgtttag gaatcaacga
     2461 tggcgcaaaa atttcccttt tccttcgtta ttcgctaact acggtttata attatcgtac
     2521 caaaacaaaa aaccgcacct atcttcagaa agatgaattt gataataagg ttttgcaaat
     2581 tcgctagtct ttcttttttt tgtaatctgc agattattag aatttaatct gcatctgtgt
     2641 tgtgtttttg ttgtattagc tggtttctaa ttattcagct tttatgcaca aaattatatg
     2701 atttccatta gctttgcatc tattccgcat atctgctata ctactttttt ctactcttgt
     2761 tttttattta ttttattgtt ttatagagtt ttaactgtct gtttcgacta gccatcacct
     2821 actttctaaa taacaatata taattcaaag tttttgtatt atatttttgt tgtgtcaaaa
     2881 tcacactaat acaatctaat gctacaatga gaaaaatcta cttttttctt atattatcta
     2941 ttccttttat attacatgcc caaaatggat atgtgcgagc ttcggggaaa caaatagttg
     3001 acccgttggg aagcaacctc attattcgga gcattggtac cggaaactgg atgcttcagg
     3061 aaggctatat gatgcaaact tcgggtgttg ccggcacaca atgggaattc cgcaaaaaac
     3121 ttaccgaaac aataggcgcc gagaaaacaa atcagtttta tactgcgtgg ctcgctaatc
     3181 atttccgcaa aatagatgtt gattcaatgg ctcgctgggg cttcaactgc gtgcgccctg
     3241 ccttacatta taaattattt acgcttccga tagaggatga acctgtggcg ggagcaaata
     3301 cctggctcga aagcggtttt gcacgtctcg atagtctgct ggcttggtgt gcagctaata
     3361 agatgtatgt aatgctcgat atgcatggtg ctccgggtgg gcagggcaaa gatgctgcga
     3421 ttgctgatta cgatatttcg aaaccttcac tttgggaaag tgaggccaat aaagcaaaat
     3481 tggtagcgct ttggcgaaag attgctgaac ggtatgccac caataaatgg attgcaggct
     3541 acgatttgct caatgagacc aactggactt ttgccgaagg taataactca caactgagag
     3601 ctttgtacgg tcgcgttacg gcggcgatac gggaagttga cccgaatcac atgattgtga
     3661 ttgaaggaaa ctggtttgcc aatgattttt cagggctcac cccagcatgg gattcgaaca
     3721 tggcttacag ttttcataaa tactggactg taaacgatgt cagcattata aaatgggtgc
     3781 ttgacttgcg taattctact aattgtccta tctggttggg tgaatcgggt gaaaattcta
     3841 atcgttggtt taccgattgt attgaactga tggaaaaaaa taacattggt tggtcatttt
     3901 ggcctgtcaa aaaatcgggc atcaacaatg tattgaaagt taccaccaat agcgattata
     3961 ccgaactgat taattactgg aaaggtactg ctgccaaacc aacagttgat aaagcatttc
     4021 aggcagtaat gacttttgcc gataaccaca aactggaaaa ttgttttgtt caacgcgatg
     4081 tgatcgatgc catgattcgc caaccgcaaa ctaccgatac aaaaccattt agggcaaaca
     4141 caactgcaag taccattttt gctgttgatt atgatttagg gcgggcagga tatgcttata
     4201 ccgataacgt ggatgcagat tatcatttaa gcaataacaa ttacacagcc tggaacaatg
     4261 gctatgctta ccggaatgat ggtgttgaca tagaaaactg ctccgatgca gtaaccaatg
     4321 gttttcatgt gggttgggtc gaagatggtg aatggatgca gtataccatt cagtcaacag
     4381 aagctatgac ttacaatgta ttactcagat atgccagtca agctgctaca gcgagagtat
     4441 atattgaagt gaatggcaag cgagcatcca aaactgtttc cctttcgcct tcgggtagct
     4501 ggactacctg gaaaacgggg gctattacca acgttataat tcctgccgga aacgtaaaag
     4561 taaaaatcgt tttcgaaacc ggaggtgcca atttcaacta ttttcagttc agaaacccca
     4621 agtcagttga caatacagca ttcgaaatgc tgagtgccga aacagcaagt tgggcaaatc
     4681 aggttacatt aaaactcaat aaagctgttg aaacgttagt tgggaatcct tttgtggtaa
     4741 aaatagatgg caaagaagcc agtattgttt ccactacagt ttcatctgcc gacaaaagta
     4801 atattgatgt agttataact gaaccgatat taaataccaa tgtgttaacg gttgattata
     4861 atacgaatgc ctgcactagt ggaacccaat cacttactac ttttcagaat cagcaaatta
     4921 aaaataatat cattgcccat caaaatattc cgggcaaaat tgaagccgag aatttcgcag
     4981 taaataatgg atttagtttt gaaacatgta ccgataccgg agctggaacc aacacttcgt
     5041 atgcagctat tgacaaatat ctggattttt atacctgggt tgcaaacagc ggaacgtata
     5101 aaatggattt ccggatctct gtaaattctg cttcagcaca gattgcagta ctgaaagatg
     5161 taaatggttc tttagtacct cttaaatcag tgtcgttcag taatacaggt ggatggcaaa
     5221 actggcaaac gcagtcggca actgtagcac tcactgccgg aaaaaatatt attcgtttgt
     5281 tatcgcgtac cgatggttac aacctgaact ggattcagtt tgcgcagctc actccggtag
     5341 agtctcctca aacattaaat atagcattat atccgaatcc ggctcaagat tctttttttt
     5401 tgcagtttaa caacgaaaat cctcgcagga tagagatact tgatttgcaa ggcagactta
     5461 tcagtcattt tgtatcgcaa ttgacttttg agagagttag tgtggtcggc atgaagcccg
     5521 gtatttatat tgtaaaaatc agcgataatc
//
LOCUS       DATDNM010000848         3209 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_420781, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000848 DATDNM010000000
VERSION     DATDNM010000848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3209
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420781"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..183
                     /locus_tag="VI413_14155"
     CDS             <1..183
                     /locus_tag="VI413_14155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915816.1"
                     /translation="MNIDIKGKSTGTMSIDLKTGIIMTSKDKKHYEGTMTVKNQGNEM
                     KMLMVIDAESQIIRLK"
     gene            218..2602
                     /locus_tag="VI413_14160"
     CDS             218..2602
                     /locus_tag="VI413_14160"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor family protein"
                     /protein_id="HEY6915817.1"
                     /translation="MKSKIIIVLLCLLAGNAFARKVITGNVVEEEVKKPIEAAQVELL
                     QLPDSVATESVFTNSEGSFNLFKADTTKNYCVRVKLRFYKMLTVPIVFKPGGRILSLG
                     NIELQPSSVNLKEITVNGSKIKVSELPDRTVYGISTDMKKTSTDGLDVLRKVPTVQVD
                     YFNEDIKVEGKSNIKIEVDGISRDKSYLKKLHPTQIEKMEVITSPTGKYDADVDAVIN
                     VITIKEMRYGLKGMVNAMLLPNDWDKYMARGNASLDYGLKKISYSFSANGGAGEFDFI
                     NSMTRTAGTSGLQRNGNTHSKFTNGNVNAGFIYDPDDFNNLSVNLNYNGSGSTSNNDQ
                     TNNISDNNVLQTINKNTSEAINKSSGLNTSLFYKHRFDKKTEHAYEIEASVYTSLRNI
                     SSTNFENIFFDANNIELSRSPIQLEENKTTSRSANMRANYTLPFDSVYTFNTGLSANY
                     SYNYINNVSSRSNTPNLEYINLKGSLYAELGKMFKKGNAKIGTRLEVSDVIINTTNSN
                     TYVSPLPYANGQYKFSDKNSLKLNYSRRVFRPSNSQLNPFVSYVDSLTESRGNIGLKP
                     AYRDNFQLTNTIKFGKNKFSGTISPQVFFEYRSGLIQTITKQKENSNTFEKFPENISN
                     GYETGLNLSVYAQISTVIFNSNVRYFRIHADKYLDQINAVDKNTWSWNSQVMCPLPKD
                     FRFFAVLSINGPTINGQELSKSTPFNLFGISKQFKNNSSLTLLAFNPFTSKNFYNTTT
                     IDNDVLYQRSESYMDLKRMFMINYSINFKVGKDLKVQKRGEEQTPEDNGIKLPF"
     gene            2642..>3209
                     /locus_tag="VI413_14165"
     CDS             2642..>3209
                     /locus_tag="VI413_14165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6915818.1"
                     /translation="MITLKNINKTYDMGQASLHVLKGIDLNISEGEYVSIMGASGSGK
                     STLLNILGILDNYDTGDYLLNNTLIKNLSEKQAALYRNEMIGFVFQSFNLINFKNALE
                     NVALPLFYKNYSRKRRNIIAMEYLDQMGLKDWAYHLPNEMSGGQKQRVAIARAIISQP
                     KVLLADEPTGALDSVTTLEVMKVLKELNG"
BASE COUNT         1099 a          575 c          671 g          864 t
ORIGIN      
        1 atgaacatag acatcaaagg taaatccacc ggaactatgt ctatagacct gaagaccgga
       61 atcataatga caagtaaaga taaaaaacat tacgaaggaa ccatgaccgt gaaaaaccag
      121 ggaaatgaaa tgaaaatgct catggttatt gatgccgaat ctcaaataat ccgtttaaaa
      181 tagtttttcc tgaatacatt tattcctatc ctgaaaaatg aaatcgaaaa ttataattgt
      241 tttgctttgt ttacttgccg gcaatgcttt tgcacgaaaa gtgataaccg gaaatgtggt
      301 tgaagaagag gtaaaaaaac caattgaagc agctcaggtg gagctgttgc aactgcccga
      361 cagtgttgca acagagtcgg tttttactaa ttctgagggt tcattcaatc tgtttaaagc
      421 tgatacaacc aaaaattact gtgtacgggt taaactcagg ttctacaaaa tgctaactgt
      481 tccgatagtg tttaagcctg gtggaagaat tcttagtctt gggaatatcg aacttcagcc
      541 gtcatcggta aatctgaaag aaataactgt aaatggctcg aaaataaagg tgagcgaatt
      601 gcccgaccgg actgtttacg gcatttctac cgatatgaaa aaaacatcga ctgatggatt
      661 ggatgtgttg cgtaaagtgc cgactgtgca ggttgattat ttcaacgaag atattaaagt
      721 agaaggaaaa tcgaatatca agattgaagt ggatgggata tcacgcgata aaagttatct
      781 gaaaaaactt catccgactc agattgaaaa aatggaagtt ataaccagcc cgacaggaaa
      841 atatgatgcc gatgtggatg cggtaatcaa cgttattacc atcaaagaaa tgcgttatgg
      901 actgaaagga atggtgaatg ccatgttgtt acccaatgat tgggacaaat acatggcgcg
      961 gggtaatgcc agtctggatt atggcctgaa aaagatttca tattctttct ctgccaatgg
     1021 tggagccgga gagtttgact tcatcaactc aatgactcga acagcaggca caagcggact
     1081 gcagcggaac gggaatacac acagcaaatt tacgaatgga aatgtgaatg ccggttttat
     1141 ttatgatccg gatgacttta ataacctgag tgtaaacctg aattataatg gtagcgggtc
     1201 tacaagcaat aacgatcaga cgaataatat ctcggataat aatgtacttc aaaccataaa
     1261 caaaaacacc agtgaagcaa taaataaaag cagcggactt aatacatcgc ttttttataa
     1321 acaccggttc gataaaaaaa cagagcacgc ttacgaaatt gaggccagtg tgtataccag
     1381 cctgagaaat atcagttcta caaattttga gaacatattt tttgatgcaa acaatattga
     1441 attatcccgg tcaccaattc agttggaaga aaataagaca acgagccggt cggcaaatat
     1501 gcgcgcaaat tacacgctgc cattcgatag tgtatataca ttcaataccg gactgagcgc
     1561 aaattacagt tataattata ttaataatgt aagctcacga agtaatacgc cgaatctgga
     1621 atatataaac ttaaagggtt ccttatatgc cgagcttggc aaaatgttta agaaaggaaa
     1681 tgctaaaata ggtacgcggt tggaagtgtc ggatgtgata ataaatacaa cgaattcaaa
     1741 tacttatgtt tcaccattgc cttatgctaa tggacagtat aaattcagcg acaaaaattc
     1801 actcaaactg aattactcgc gccgggtatt caggccatca aacagtcagt tgaacccatt
     1861 tgtaagctac gttgacagtt tgaccgaaag ccgcggaaat attggtttaa agcctgctta
     1921 tcgcgataat tttcagttga ccaacaccat aaaattcgga aaaaacaaat tctcgggcac
     1981 catttcaccc caagtgtttt ttgagtaccg gagtggtttg atccagacta ttactaaaca
     2041 gaaagagaac tcaaatacgt tcgagaaatt tccggaaaat atttcaaacg gatacgaaac
     2101 agggttgaat ttgtctgtat atgcgcaaat ttctacggtc attttcaact caaatgtgag
     2161 atatttcagg attcacgccg acaagtacct ggatcagata aatgctgttg acaaaaacac
     2221 ctggagctgg aattcacagg ttatgtgtcc actgccgaag gatttccgct tttttgccgt
     2281 gttgagcatt aacggaccaa cgattaacgg acaagagttg agtaaatcaa ctccgtttaa
     2341 tctttttgga atatcaaaac agtttaaaaa caacagtagc cttactttgc tggcattcaa
     2401 tccgtttaca agcaagaact tttataatac aaccaccatt gataatgatg ttttgtatca
     2461 acgatctgaa tcgtacatgg acttgaagcg tatgtttatg attaactaca gcattaattt
     2521 taaagtagga aaagacctta aagttcaaaa acgtggtgaa gaacaaaccc cagaagacaa
     2581 tggaataaaa ctgcctttct aattaaataa gtcgaacact gaataataca aatacatcaa
     2641 tatgataact cttaaaaaca tcaacaaaac gtatgacatg gggcaggctt cattgcatgt
     2701 tctgaaagga attgacctga atatctcgga aggcgaatat gtttccatta tgggtgcttc
     2761 gggttcaggc aagtctactt tgctgaatat tctgggcatt ctggataact atgatacagg
     2821 cgattatttg ttgaataata ccttgattaa aaatctgtcg gagaaacagg cagctcttta
     2881 ccgaaacgag atgattggct ttgtttttca gtctttcaac ctgataaatt tcaagaatgc
     2941 gttggaaaat gtggctttgc cgctgtttta taaaaactac agccggaaac gcaggaatat
     3001 aatagccatg gaatacctgg atcagatggg actcaaggat tgggcttatc acttgcctaa
     3061 tgaaatgtct ggtgggcaga agcaacgggt cgctattgcc cgggccatta tttcacagcc
     3121 caaagtgttg ctggccgacg agcctaccgg tgcgctggat agtgtaacca cgctggaagt
     3181 aatgaaagta ttgaaagaac tgaatggta
//
LOCUS       DATDNM010000849         6512 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_954323, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000849 DATDNM010000000
VERSION     DATDNM010000849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6512
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_954323"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..529
                     /locus_tag="VI413_14170"
     CDS             <1..529
                     /locus_tag="VI413_14170"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEY6915819.1"
                     /translation="QLVNARISASSEDNYYTIIRKKTALLFSTCTEVGGLSVNASEEE
                     LIHLRNFGEYLGICFQIKDDIFDYSPDIQIGKPTGNDIRDGKVTLPLIYGLLNTVGAE
                     REQVLSWIENKDFTPENIQAITEFTHKSGGVKYAIAQMEVFKNKAIEELNGFADSDIR
                     QSLILCAEYAANREF"
     gene            complement(584..1462)
                     /gene="deoC"
                     /locus_tag="VI413_14175"
     CDS             complement(584..1462)
                     /gene="deoC"
                     /locus_tag="VI413_14175"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004139 - deoxyribose-phosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0009264 - deoxyribonucleotide catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEY6915820.1"
                     /translation="MSKFDDLFKQYNCNLNDENVKQDIQKIIAAHYAENDNVAVYKQC
                     LSQIDLTSLNGTDMHAEIISMVEKVNGFKTAFPNLPNVGAICVYPALVPVVKEHLTEN
                     IGIASVAAGFPASQTFIEVKVAETAMAVMEGATEIDVVISIGKFLEGNYQEVYEELSE
                     LKATCRDAHLKVILETGALQTASNIKKASILAMASGADFIKTSTGKIPVAATLEATYV
                     MCNAIKEWNEKTGAKVSYKPAGGIVSTEDAVKHYTLVKEILGNEWLNNTMFRFGASRL
                     ANNLLSSIEGKEVKYF"
     gene            complement(1543..1872)
                     /locus_tag="VI413_14180"
     CDS             complement(1543..1872)
                     /locus_tag="VI413_14180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006800709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HEY6915821.1"
                     /translation="MTIQEAQKQVDDWIKTYGVRYFGELTNMAILTEEVGELARIISR
                     TYGEQSFKKSDKEANLADEMADVLWVLICLANQTGVNLTEAFEKNMQKKTDRDKTRHL
                     ENDKLSQ"
     gene            complement(1873..2544)
                     /locus_tag="VI413_14185"
     CDS             complement(1873..2544)
                     /locus_tag="VI413_14185"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase family protein"
                     /protein_id="HEY6915822.1"
                     /translation="MRYVRIHKEGRLILGTLALILLLLNLYIYTHFFGIVSIINIIIS
                     ALLLFFFAYFFRNPPRKVYIDDPSLVVAPADGTIVVVEPTDELEYFGDKRIQVSIFMS
                     VFNVHANWYPIKGTVLKSVHHSGRHMAAFLPKSSTENERSTVVIESEGKTQILVRQIA
                     GALARRIVTYAHAGKKSHLNEHLGFIKFGSRVDLYFPLDTEIFVQVGESTTGNETIIA
                     RLNED"
     gene            2764..4107
                     /gene="purB"
                     /locus_tag="VI413_14190"
     CDS             2764..4107
                     /gene="purB"
                     /locus_tag="VI413_14190"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016278592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEY6915823.1"
                     /translation="MNLSLLTAISPVDGRYRTKTEAYAAYFSEYALMRYRVLVEVEYF
                     IALCEIPLKQLEQVPVSVFPKLRAIYNEFSEADALKIKEIESVTNHDVKAIEYFVKEK
                     FDLLGLEAFKEFIHFGLTSQDINNTAVPLSIKEALAKVYYPEMDTLVQALTHLVDEWR
                     DVSMLAKTHGQPASPTRLGKEMMVFVNRLSQQLAVLKQTPNSAKFGGATGNFNAHAVA
                     YPSNDWKNFGNKFVGEKLGLDREQWTTQISNYDNLAAQFDAMKRINTVLIDFCRDIWT
                     YVSMEYFKQKIKAGEVGSSAMPHKVNPIDFENAEGNLAIANASFEFLAGKLPVSRLQR
                     DLTDSTVLRNVGVPFAHTLIATQSILKGMSKLLLNETAIYRDLDNTWAVVAEGIQTIL
                     RREAYPAPYEALKALTRTNEGITEKSIRDFIETLDVSQSVKEELKRITPRNYTGV"
     gene            4222..6060
                     /locus_tag="VI413_14195"
     CDS             4222..6060
                     /locus_tag="VI413_14195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6915824.1"
                     /translation="MFKFITLLKRFVPPYKKYVLLCFMFNILTMLFSLFTYAAVIPVL
                     RILFKIETAVTVYKPWVWGDKFETILKAFANNLSYDLQQFIANVGPGTALLYIGGFLI
                     LMTALKVGTAYMGSYYMIPIRTGVVSDLRNLLYKKIVSLPIGFFTTERKGDIMSRMMG
                     DVTEVEASIMSSLDMIFKNPILILGYLIVMFVMSWKLTLFVLLLLPFSGWLIGKTGKS
                     LKRRSTLGQEQTGELLSQLEETLGGLRVVKAFNAEHKLEARFAQQNERVRKTFNRINR
                     RFNLAHPVSELLGTIVIAILLWFGGVLILNNQGGISAAEFIYYILIFYNIIPPSKELS
                     KASYSINKGMASLERVDKILHTENTIKNPQQPETLKPFSDKIEFRNLSFKYHSHWVLR
                     DINLSVPKGKTVALVGQSGSGKSTLVDLLPRYYDPVKGEILLDGIDVKKYNTHDLRSL
                     MGNVNQEAILFNDTFFNNIAFGVENATLEQVIEAAKIANAHDFISATENGYESTIGDR
                     GSKLSGGQRQRVSIARAILKNPPILILDEATSALDTESEKMVQEALENLMMNRTTLVV
                     AHRLSTIKRADEICVLHEGKIVERGKHDELIELNGYYKRLCDMQSF"
     gene            complement(6233..>6512)
                     /locus_tag="VI413_14200"
     CDS             complement(6233..>6512)
                     /locus_tag="VI413_14200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011202425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEY6915825.1"
                     /translation="WLKHKVNPNFALLAIDRDEPLEMVKNFAKAIPITYPIGLDPRAD
                     IFALYAKREAGVTRNVIIDKAGKIILLTRLYNEEEFKRMTDLLDSVLK"
BASE COUNT         1915 a         1211 c         1362 g         2024 t
ORIGIN      
        1 tcaattggta aatgcccgta tttcggcatc gtctgaagat aattattata ctattatccg
       61 aaaaaaaaca gctttattgt tttctacgtg cactgaagtc ggtggattat cggtaaatgc
      121 cagtgaagaa gaattgatac atttacgtaa ttttggagaa taccttggaa tttgttttca
      181 gataaaagac gatattttcg attactcgcc tgacatccag attggaaaac ctactgggaa
      241 tgatattcgc gatgggaaag taacacttcc acttatttat ggattgttaa atactgttgg
      301 ggcagagcga gagcaggtgt tatcgtggat tgaaaacaag gattttactc cggaaaacat
      361 acaagccatt actgagttta ctcataaaag tggtggagtg aaatatgcaa tcgctcaaat
      421 ggaggtattt aaaaacaaag ccatcgaaga actcaatggc tttgctgaca gtgatataag
      481 gcaatcactt attttgtgtg ctgaatatgc agctaataga gaattttaac tgccccaacc
      541 cctaaagggg agcaagaaaa gtccccttta ggggatttag gggtcaaaaa tatttcactt
      601 cttttccttc gattgaactt aatagattgt tagctaaacg gcttgctccg aagcgaaaca
      661 tggtattgtt cagccactca tttccaagga tttcttttac taaagtgtag tgctttactg
      721 catcttcggt agaaacaatt ccacctgcag gtttatagct aacttttgcc ccggtttttt
      781 cattccattc ttttattgca ttacacatta catacgttgc ttccagtgtt gcagctacag
      841 gaattttgcc tgtcgatgtt ttgataaagt cggcaccgga tgccatcgcc aggatagaag
      901 cttttttgat attcgaagca gtttgcaatg ccccagtttc caaaatgact ttcaagtgcg
      961 catcgcggca agtagcttta agttcggaaa gttcttcgta cacttcctga tagttgcctt
     1021 ccagaaattt accgattgaa attaccacat caatttcagt agcaccttcc ataactgcca
     1081 tagctgtttc tgcaactttt acttcaataa aggtctgtga tgcagggaat cctgcagcca
     1141 ctgaggcaat tccgatattt tcagtcaaat gttcttttac aacaggcacc aaagccggat
     1201 aaacgcaaat agctcccacg tttggcaagt ttggaaatgc agttttaaag ccatttactt
     1261 tttctaccat tgaaataatc tcggcatgca tatcagttcc gttcaaagaa gtcaaatcaa
     1321 tttgactcaa acattgtttg taaactgcta cattatcgtt ttcggcataa tgtgcggcaa
     1381 taatcttttg aatatcttgt tttacgtttt cgtcgttgag attacaatta tattgcttga
     1441 aaaggtcgtc aaatttactc atgttatttg gagttaatgg gtgattcgtt agttaggtgt
     1501 gaggagtaga gttgctacac tcgtaataag ctttgcaata gactactgac ttaacttgtc
     1561 gttttccaga tgtcgcgttt tgtcgcgatc tgttttcttt tgcatgtttt tttcgaatgc
     1621 ttcggttaga tttacgcctg tttgattggc caggcaaatc agtacccaaa gtacatcggc
     1681 catttcgtca gccagattag cttctttgtc tgattttttg aaagattgct cgccgtaagt
     1741 tctggaaatt atgcgagcaa gctcaccaac ttcttcggtc agaatggcca tgttggttaa
     1801 ttcgccaaaa tagcggacac cataggtttt aatccaatcg tcaacttgtt tttgagcttc
     1861 ctggatagtc atttaatctt cgtttagtcg ggcaataatg gtttcgtttc ctgttgttga
     1921 ttctccaacc tgtacgaaaa tttcagtatc gagcggaaaa tataaatcta ccctggagcc
     1981 aaatttaata aagccaagat gttcgttgag gtggcttttt ttgcctgcat gagcgtatgt
     2041 tacaattcga cgggccaacg ctccggcaat ctggcgaact aaaatttgtg ttttcccttc
     2101 tgactcaata actacggtag aacgttcatt ttcggtactt gactttggca agaatgcagc
     2161 catgtgacgt ccgctgtggt gaacagattt gagaacagtt cctttaatag gataccagtt
     2221 ggcgtgtaca ttgaaaaccg acatgaaaat agaaacctgg atgcgtttgt cgccaaaata
     2281 ctccaattcg tcagttggct ctactaccac aattgttcca tctgccggag caacaacgag
     2341 gctcggatca tcgatataaa ctttgcgggg agggttacgg aaaaagtagg caaaaaagaa
     2401 cagtagtaaa gccgaaatta taatgtttat aatggagacg ataccaaaga aatgggtgta
     2461 gatgtataaa tttagcagca gcaggattaa tgccaacgta cctaaaatta accgaccctc
     2521 tttatgaatt ctaacgtatc tcatatttgt ttgttttgtc tgaaatggct tataacctga
     2581 attgcctttg tgttatcgcg caatatagct tttattagtg aaacaaaagt aaagaaaaag
     2641 aatcagtgtt gcaagtgagg ggcggaaact tttctaatcc gatagaattg attaactttg
     2701 cggcttaatt taaagtgatt aagggttagt taataacccg ccaaaataac aaaaatactc
     2761 cttatgaatt tatcccttct aactgcaatt tcccccgtcg atggtcgtta ccgtactaaa
     2821 accgaagctt atgctgctta tttctcagaa tatgcgttga tgcgttaccg tgttttggtg
     2881 gaagttgagt attttattgc attgtgcgaa attccattga aacagttgga acaggttcct
     2941 gtatcggttt ttcctaaatt acgggcaata tataatgaat tttctgaagc tgatgcgttg
     3001 aaaattaaag aaattgaaag tgtaacgaat catgatgtaa aagcgattga gtattttgta
     3061 aaggaaaaat tcgatttgct tgggttggaa gctttcaaag agtttattca ctttggatta
     3121 acttcacaag atatcaataa tacggctgtt ccactttcaa ttaaagaagc gctggctaaa
     3181 gtttactatc ctgaaatgga tactttggta caagctctta cacatttggt tgatgaatgg
     3241 cgcgatgttt ctatgttggc aaaaacacac ggacagccag cctcaccaac ccgtttaggg
     3301 aaagaaatga tggtttttgt aaatcgcttg agccaacagt tggcggtatt gaaacaaaca
     3361 ccaaattcgg ccaaattcgg aggtgctaca ggaaatttca acgcgcatgc ggtggcttat
     3421 ccatctaacg actggaaaaa tttcggaaac aagtttgtag gcgagaaact cggtttggat
     3481 cgcgaacagt ggacaaccca gatttccaac tacgataacc tggcagccca gtttgatgcc
     3541 atgaagcgca ttaataccgt tttgattgat ttttgccgtg atatctggac gtatgtatca
     3601 atggaatatt tcaaacaaaa aattaaagcc ggcgaggttg gttcatcagc catgccacat
     3661 aaagtgaatc cgattgattt cgaaaatgct gagggaaacc tggccattgc caatgcttca
     3721 ttcgaatttt tggcaggtaa attaccggtt tcacgtttgc agcgcgactt gactgacagt
     3781 accgttttac gtaacgtggg tgtgcctttt gcacatacat taattgcgac ccaaagtatt
     3841 ctgaaaggaa tgagcaaatt actcctcaac gaaactgcta tttaccgtga tttggataat
     3901 acctgggctg tagttgccga aggaatccag accattcttc gtcgcgaagc ttatccggca
     3961 ccttacgaag ctttgaaagc attgacccgt accaacgaag gaattactga gaaatcaatt
     4021 cgtgatttta tcgaaacgct agatgtaagc caatcggtaa aagaggagct gaaacgtatt
     4081 acaccccgca attatacagg agtttaatcc attaacaaga agtaaaagag gcaaggagta
     4141 agcaactgat tgctaattca ccttgcctct ttctttttta cctttgcgat aaagcttttt
     4201 tacttttaga ttctataaaa tatgttcaaa ttcataacgc tcctgaagcg gtttgttccg
     4261 ccctataaaa aatacgtact gttgtgcttc atgttcaata ttttgacaat gttgtttagt
     4321 ttgtttacgt atgcggctgt aattcctgtt ttaagaattc ttttcaaaat agaaacggct
     4381 gtcacggttt acaaaccctg ggtatggggt gataaatttg aaactattct aaaagccttt
     4441 gccaacaatt tatcgtatga tttacagcaa ttcattgcaa atgtaggacc aggtacagca
     4501 ttgctttata ttggcggttt tttaattctt atgactgctt taaaggttgg cacagcctat
     4561 atgggttcgt actatatgat accaattcgg actggagtag taagcgattt gcgaaattta
     4621 ctgtacaaaa aaattgttag tcttcccatt ggttttttca ctaccgaacg caagggcgat
     4681 attatgtcac gcatgatggg cgatgttact gaagttgagg catccataat gagctcattg
     4741 gatatgattt ttaaaaatcc aatacttatt ctgggttatc ttatagtcat gtttgtaatg
     4801 agctggaaat tgacgctttt tgtgctactt ctacttccat tcagtggttg gttaatcggt
     4861 aaaaccggaa agtcattgaa acgaagatcc acattaggtc aagaacaaac aggagaattg
     4921 ctttcgcagc tggaagaaac tttgggcggc ttacgggtgg ttaaagcatt taatgcagag
     4981 cacaaattgg aggctcgctt tgcgcaacaa aacgaacgag ttcgtaaaac atttaatcgc
     5041 attaaccgtc gtttcaatct ggctcatccg gtaagtgaat tgctgggtac tattgtaatt
     5101 gctattcttt tgtggtttgg aggtgtgctt attttaaata atcagggtgg tattagtgct
     5161 gccgaattta tttattatat tcttattttt tacaatatta ttccaccttc aaaggagtta
     5221 tcaaaagcat cctacagcat taataaaggt atggcctcac ttgagcgtgt tgacaaaatt
     5281 ctgcacaccg aaaacacgat taaaaatcct caacaacctg aaacacttaa accattctcg
     5341 gataaaattg agtttcgcaa tttaagtttc aagtatcaca gccattgggt attgcgcgat
     5401 atcaacctgt ctgttccgaa aggaaaaacg gtagctctgg ttggtcagtc tggttcggga
     5461 aaatcgactt tggtggattt gttgccacgt tattatgacc ctgtgaaagg tgaaattctg
     5521 ctcgacggta ttgatgttaa aaaatacaat acccacgatt tgcgttcgct gatggggaat
     5581 gtgaaccagg aagctatttt gtttaacgat acttttttca acaatattgc tttcggagtg
     5641 gagaatgcca cgttggaaca ggtgatagaa gcggccaaaa ttgcgaatgc gcacgatttt
     5701 atttcggcta ctgaaaatgg atatgaatca acaattggtg accgtggaag caagctttcg
     5761 ggcggacaac gccaacgtgt aagcattgcc cgcgccattc tgaaaaaccc tccgattttg
     5821 attttggacg aggcgacttc tgcactcgat accgaatcgg aaaaaatggt gcaggaagcg
     5881 ctcgaaaacc tgatgatgaa ccgtacaaca cttgttgtgg ctcaccgcct ttctactatt
     5941 aagcgtgctg acgaaatttg tgtgctgcac gaaggtaaaa ttgtagaacg tggcaagcac
     6001 gatgaattaa ttgaattgaa tggttattac aagcgtttgt gcgatatgca atcgttctaa
     6061 aaagcagtaa gaggcaagca gtaagaggta agctctaaaa aagaagaaaa caaaaatgaa
     6121 gatagtctcc ttctttagga ggaaaataaa ataaataaga aaggctttag ccaaatgatg
     6181 aattatcatt tgattaaagc cttttttctg ggtggaaact ttatcgtttc cgttatttca
     6241 gcaccgaatc caacaaatcg gtcattctct tgaattcttc ttcattgtac agtctcgtca
     6301 acaaaatgat tttgcctgct ttatcgatta tcacatttcg ggtaactccg gcttcgcgtt
     6361 tggcgtacaa agcaaaaata tcagcccgcg gatctaatcc aatagggtaa gtaatgggaa
     6421 tggcttttgc aaaattcttt accatttcaa gtggttcgtc gcggtcaata gccagtaagg
     6481 caaagtttgg atttactttg tgtttcagcc ag
//
LOCUS       DATDNM010000850         3077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1489912, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000850 DATDNM010000000
VERSION     DATDNM010000850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3077
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1489912"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(57..1016)
                     /locus_tag="VI413_14205"
     CDS             complement(57..1016)
                     /locus_tag="VI413_14205"
                     /inference="COORDINATES: protein motif:HMM:NF020650.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6915826.1"
                     /translation="MKNLFFRIIFTALSGIFLVACSGKSPETIRIGILDGPSAVSFIK
                     LIDQPPVIEGKKVEIIIKSEPQQIQALMMQDKLDFAILPTIMAANLYNKGVRYRMVAC
                     PVWGTLYVLTNTSATGITDLKNQTLSLFGQGSTADVLLQRLIQKNRIENVHIDYTLSN
                     NSDIARALKLRKIKFAVVSEPMVSKLLAQDSTMHILTKLTCEEFLLNSYKNVFVQTSF
                     LVNGRLSMNNRDIVTQICNAYSESCNFLNEQPENAAKLLVKNNILPDSAVARHSIPLC
                     NINYISSFAIAQELESYLRIFYTFDPKSLGGKMPDKDFIYQVY"
     gene            1115..2365
                     /locus_tag="VI413_14210"
     CDS             1115..2365
                     /locus_tag="VI413_14210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012573754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEY6915827.1"
                     /translation="MKSTQIYMVQLLFVIIIVILVADFGLERYLAYLNIKESGKKLPP
                     LLQDIYDPEKYAKQQDYFRTNSRFGMLTSSFSFVITLIMFAFGGFACLDGLVQQYVQN
                     QIWTPIIFFGILFIANDILSIPFDWYDTFVIEERFGFNKVTPKLFILDKLKGYAMTIV
                     LGGGILYVIIWIYTLTPTYFWLLAWGVITGFSLFMTMFYSQIIVPLFNKQTPLGEGEL
                     RNEIEKFALKTGFKLDNIFVIDGSKRSTKANAYFSGLGTKKRIVLYDTLMDKMTTDEI
                     VAVLAHEVGHYKHKHTLINFLISMPTTLVLFFVFGMILRSDDLAKALGGTAASFHLNA
                     LAFSILYSPISLALDIFTNVLSRKFEYQADAFAANHGYASHLKSGLKKLTATSLGNLM
                     PHPLYVFFHYSHPTLYQRIQRMTK"
     gene            2435..>3077
                     /locus_tag="VI413_14215"
     CDS             2435..>3077
                     /locus_tag="VI413_14215"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: protein motif:HMM:NF004079.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008782 - adenosylhomocysteine
                     nucleosidase activity [Evidence IEA];
                     GO_function: GO:0008930 - methylthioadenosine nucleosidase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009164 - nucleoside catabolic process
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HEY6915828.1"
                     /translation="MLLGIMGAMPEEMDKIIAAIENKEIVERGSRIYYRGQLYGQDVV
                     AVFSRWGKVAAATTVTNMILEFGVDRIVFTGGAGAISPELNVGDIVIGQRLYQHDMDA
                     RPLMRRFEIPLTGKTSYETPQQNVDTMAHAVHNFLINNKEFRKTLHINNIINVKMLIG
                     DIASGDLFISSTEMKQALIKNLPSVVCAEMEGAAVAQVCDDYGVPLIVVRIISD"
BASE COUNT          945 a          562 c          582 g          988 t
ORIGIN      
        1 agtattgttg gtataagaat tcttggcttc atagtgcgtg tctaaaatat tatttttcag
       61 taaacttgat aaataaaatc tttatcaggc attttcccgc caagactttt tggatcaaat
      121 gtataaaaaa tacggagata actttcaagt tcctgagcaa tagcaaacga agaaatataa
      181 ttgatattac acaaaggaat ggaatggcgc gcaacagccg aatcaggtaa aatattgttc
      241 tttacaagga gcttggcagc attttcgggt tgttcattta agaaattaca actttcagaa
      301 tatgcgttgc aaatctgcgt tacaatatct ctattattca ttgataatct gccgtttaca
      361 agaaaagacg tctgaacgaa tacgttttta taactattaa gcaaaaattc ttcgcaggtc
      421 agtttagtca gtatatgcat ggttgaatcc tgtgccagta acttacttac cattggttcg
      481 gaaacaaccg caaattttat tttcctcaac ttcaatgccc gggctatatc actgttattg
      541 cttaaagtat agtctatatg cacattttca attctatttt tttgtatcag tcgttgtaac
      601 aaaacatcgg ctgtagatcc ctgcccaaat aaagaaagag tctgattctt aaggtcggta
      661 atcccggttg cagaggtatt tgtaagtacg tatagagttc cccataccgg acatgccacc
      721 atgcggtaac gtacgccttt gttgtataaa ttggctgcca taattgttgg cagtattgca
      781 aaatccaact tgtcctgcat cataagcgcc tgaatttgtt gaggttcgct tttaattatt
      841 atttctacct ttttaccttc aatcaccgga ggttgatcta tcaattttat gaaactcaca
      901 gccgaaggcc catccaatat acctatccga atggtttcag gagatttacc ggaacaagca
      961 actagaaaaa ttccactcag tgctgtaaat atgattctaa aaaaaagatt cttcataacg
     1021 tatcaataat gtttcaaagt gtacaaagat ataaattttg acttaaatag cctttgttcg
     1081 gcggtttcaa gctgtaaaat aactatattt gtatttgaaa tctacacaaa tttatatggt
     1141 tcagttgctt tttgtcatta tcattgttat cctcgtagcc gattttgggc tggaacgtta
     1201 tctggcttat ttgaatatta aggaatccgg gaaaaaatta ccaccattat tacaagacat
     1261 atacgatcct gaaaaatatg caaaacaaca ggattatttc agaaccaatt cacgttttgg
     1321 catgctaacc agcagtttca gttttgttat tacgttgatt atgttcgcat ttggcggttt
     1381 tgcatgttta gatggcctgg ttcagcaata cgttcaaaat caaatctgga cacccattat
     1441 cttctttggt attttattca ttgccaatga tatactgtca attccgtttg attggtatga
     1501 caccttcgta atagaagaac gcttcgggtt caataaagtt acacccaaac tttttattct
     1561 tgataaactg aaaggctatg ccatgaccat tgtgctcggc ggaggaattt tatatgttat
     1621 catctggatt tatacgctga caccaactta tttttggctg ctggcttggg gtgtaataac
     1681 tggcttcagt ttatttatga ccatgtttta ttcgcaaatt attgttccgc ttttcaataa
     1741 acaaactcca ctgggcgaag gtgaactgcg caacgaaatc gaaaaatttg cactcaaaac
     1801 cggtttcaaa cttgataata tatttgtgat cgacggctca aaacgttcaa ccaaagcgaa
     1861 tgcatatttt agtgggttag gaacgaagaa gcgtattgtg ttgtatgata cattgatgga
     1921 taaaatgact accgatgaaa tcgtggctgt gctggctcac gaagtaggtc attataagca
     1981 taagcataca ttaattaact tcctgatttc catgccaaca acgttggttc ttttctttgt
     2041 ttttggtatg atactcagaa gcgatgattt ggcaaaggcg ttgggtggaa cagccgcatc
     2101 attccatctg aatgcactgg catttagtat tttatattct ccaatttcat tagcactcga
     2161 tattttcact aatgttttat cccgaaaatt tgagtatcag gctgacgcat ttgctgcaaa
     2221 tcacggatat gcttcccact tgaaatccgg cttgaaaaaa ctaacggcca cttcattggg
     2281 aaatttaatg cctcatccac tttatgtatt tttccattat tcacatccaa ctctttacca
     2341 gcgaattcaa cgaatgacca aatagttaat gctaaatgtc caatttgaaa tcatctgact
     2401 taattggaaa ttgataaatt gaaaattaaa aactatgtta ttaggaatca tgggtgccat
     2461 gcccgaagaa atggacaaaa taattgcagc tatcgaaaac aaagaaattg tagaacgggg
     2521 cagtagaatt tattaccggg gccaattgta tggacaagac gtggtagcag tattttcacg
     2581 atggggaaaa gttgcagctg caaccacagt tactaatatg atcctggagt tcggtgttga
     2641 tcgcatcgtt ttcaccggtg gtgccggggc tatttctcct gaattgaatg tgggagatat
     2701 tgttatagga caacgcttgt accagcacga tatggatgca cgcccattaa tgcgccgttt
     2761 cgaaattccc ttgacaggaa aaacatctta cgaaacacca cagcaaaatg ttgatactat
     2821 ggcacatgcg gtacacaatt ttctaatcaa caacaaagaa ttcagaaaaa cactccatat
     2881 caacaatatt attaatgtta aaatgcttat cggagatatt gccagcggag atttattcat
     2941 ttcaagtact gaaatgaagc aagctttgat aaaaaatttg ccttcggtag tttgtgctga
     3001 aatggaggga gcagcggtgg cgcaggtttg tgatgactac ggcgtaccac tgattgttgt
     3061 tcgtataatt tcagata
//
LOCUS       DATDNM010000851         2460 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2023865, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000851 DATDNM010000000
VERSION     DATDNM010000851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2023865"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..330)
                     /locus_tag="VI413_14220"
     CDS             complement(<1..330)
                     /locus_tag="VI413_14220"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6915829.1"
                     /translation="MKKILLPLLLFGFRVALSQTGGIISGKISDKQTDETLNDVNVFV
                     KGTNVSTSTNEKGTFVLSNLSTTKIVLVISRVGYETIELPVTVSENKPTVVNLALNIE
                     NQVGNEVV"
     gene            complement(374..1099)
                     /locus_tag="VI413_14225"
     CDS             complement(374..1099)
                     /locus_tag="VI413_14225"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEY6915830.1"
                     /translation="MSSKHYIQIKCIVVDDEPMARDVIKRYIHQVPKLKLLAEFGNAI
                     DATIFLQEQAVDIIFLDIKMPQLSGTEFVRSLRTVPKIIFTTAHKEYAHEGFELDVTD
                     YLLKPIRFDRFLRAVNKAFPQKQHEADSPVLLDNNPVPSFIYLRVDRKMIKVLLDDIL
                     YIESDKDYVKVYTEKGYFITRQTIASVEAMLSDSKFIRVHRSYIVSLAKMKSFTAETV
                     EVGNKELPIGKLYRNIFLKLQGS"
     gene            complement(1092..2261)
                     /locus_tag="VI413_14230"
     CDS             complement(1092..2261)
                     /locus_tag="VI413_14230"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEY6915831.1"
                     /translation="MSSVLNTRFILSDERKYRIRRHLLFWSFWGFYFGMVRELNPKVL
                     KDTGHFPNPAQTFAEAFLMLLPQAILVYPLIYFILPRYVFNGKFIKASLWIFLFLFST
                     IFVNAALLIYIPWHKVAWLSSQRQLFQGVSVSSKWLLAFMAATQGSLAGAALAASFKM
                     FKHYHLKNIRNLQLQKENTAAQMQLLTAQVHPHFLFNTLNNIYSQTQLESPKGSKMIM
                     GLSDMLRYILYEGQKPLVPLNQELLMITEYINLEKIRYGNKLDVHVLMPDKPGNLFIA
                     PLLLLPFVENCFKHGTSKILERPWINLTVELKDTTLVMKLMNGKVRLAEDQKTKTGIG
                     INNVRQRLELLYTNKYDLQIREDEEVFVVDLRVELVRREIQEQTIAPQQVKAAYV"
BASE COUNT          724 a          480 c          496 g          760 t
ORIGIN      
        1 tacgacttcg tttcctacct ggttctctat gtttaaagca agatttacga ctgttggttt
       61 gttttcactt actgtgaccg gcaactctat tgtttcgtaa ccgacacggg atatgaccag
      121 gactattttt gttgtactca aattggaaag tacaaaggtt cctttttcat ttgtggaggt
      181 agaaacattg gttcctttga caaaaacgtt tacatcattc aatgtttcgt cggtttgttt
      241 atctgaaatc tttccactta ttatccctcc cgtttgggat aaagcaacgc gaaatccgaa
      301 cagaagcaag ggcaataaaa ttttcttcat aacgtcaccc gttttgattc gagactggtt
      361 attctaatta tgattagcta ccctgtagtt tcaaaaagat attgcgatag agttttccta
      421 tgggcagctc tttattccct acttcgactg tttcagcagt aaaagatttc attttggcta
      481 atgaaacaat ataggaccga tgcacacgaa tgaatttgct gtccgacagc atggcctcaa
      541 ctgatgcaat ggtttgacga gtgatgaaat agcctttttc tgtatagact tttacataat
      601 ctttatcgct ttctatgtag agaatgtcgt ctagtaatac tttgatcatc ttacggtcta
      661 cgcgtaaata aataaaagat ggcacaggat tgttatcaag taaaacaggc gagtcagctt
      721 cgtgttgctt ttgcggaaag gccttgttaa cagccctcag gaacctgtca aaccggatcg
      781 gctttaataa ataatctgta acgtcgagtt cgaagccttc atgtgcatat tccttgtgcg
      841 cagtggtaaa aatgattttg ggaaccgtac gcaggctcct cacaaactcg gttccgctta
      901 attggggcat tttaatgtca agaaaaataa tgtcaaccgc ctgttcctgt aaaaaaatgg
      961 tggcatcaat tgcatttccg aattcagcga gcaatttcag tttcggaacc tgatgaatgt
     1021 accgttttat gacgtccctg gccatgggct catcatcaac aacgatacac ttgatttgta
     1081 tgtaatgttt gctagacata agcagcttta acttgctgag gggcaatcgt ttgttcctgg
     1141 atttcccgcc tgaccagctc aactctcagg tccactacga aaacctcttc atcttctctt
     1201 atctgcaagt cgtatttgtt cgtgtataat aattccaatc tttggcggac gttgttgatt
     1261 ccaataccgg ttttagtttt ttgatcttcg gccaaacgaa ctttcccgtt catcagcttc
     1321 attacaagtg ttgtatcttt taattcgaca gtcagattga tccatgggcg ttccaatatc
     1381 ttacttgttc catgtttaaa acaattttct acaaagggca atagcaatag aggagcaatg
     1441 aataggttgc caggcttatc gggcatgagc acgtgaacgt ccaacttatt gccataacga
     1501 atcttctcaa ggttgatata ttctgtaatc atcaacaatt cctggttcaa tggtactagt
     1561 ggtttttgac cttcatataa gatataacgg agcatatctg atagccccat tatcattttc
     1621 gatccttttg gtgactccaa ttgtgtctga gagtaaatgt tattgagagt attgaataga
     1681 aaatggggat gtacctgggc cgtaagtaat tgcatttgtg ccgccgtgtt ttccttttgc
     1741 aattgaaggt tacgaatatt ttttaagtga taatgcttaa acattttaaa actggcagca
     1801 agtgctgccc cagctaatga gccttgcgtc gcagccatga aggctaacaa ccattttgac
     1861 gaaactgaca caccctgaaa caattgcctt tgggaagaca accaggcgac cttgtgccag
     1921 ggaatataaa ttagcaaagc agcattcacg aaaatggtag aaaataaaaa cagaaatatc
     1981 cataaagatg cttttatgaa tttgccattg aacacataac gtggtaggat gaaatagatt
     2041 aaagggtaca ccagtattgc ctgcggcaac aacatgagaa acgcttctgc aaaagtttgt
     2101 gcggggttgg gaaaatgccc tgtgtctttg agaacctttg ggtttaattc ccgtaccata
     2161 ccaaaataaa atccccagaa gctccaaaaa agcaggtgtc gcctgatacg gtattttctt
     2221 tcatcagata atataaacct ggtattgaga actgagctca tagatttgaa ataaacagtt
     2281 cattaagcaa tcaacgggac gtctaattag tgacgcaaag ctttaattaa atataatcta
     2341 aataaggtgg attgcgaaat aggacggtgg ggaaaagaca gacataaact aagtcgcgac
     2401 taaattgttt cgtcgtagac aaaaaaaggc ttttaccaca agctaggtaa agaagtcatt
//
LOCUS       DATDNM010000852         3458 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1062042, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000852 DATDNM010000000
VERSION     DATDNM010000852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3458
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1062042"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..707)
                     /locus_tag="VI413_14235"
     CDS             complement(<1..707)
                     /locus_tag="VI413_14235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915832.1"
                     /translation="MNKIFKLFSILSLVTIVFFACTPDQYELKAPLDKSALKFSVTKD
                     ATNPNKFILKSLTPNAQPFWVTPVGTSVKMTDTIVIPFPGKDTIMYSVETPGGIVTAN
                     PYAFEVTTIDEAYVSGQMWTDLTGGINKSKIWVLAIDDNGVSKGGFTSPFYFGGTGWE
                     WDPNFSDIGWAGVSKGDYGTMTFDLIGNANFKSDNKMFPDLSGTGTFMLFPGSKELIT
                     YGAQVLHDKAQGGAVAN"
     gene            complement(732..2369)
                     /locus_tag="VI413_14240"
     CDS             complement(732..2369)
                     /locus_tag="VI413_14240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009037356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6915833.1"
                     /translation="MKRFKLNILIAGVLTLGLFSSCSDSFLNSVPPSSLLDENFYKTE
                     ADAEMALVGCYDGYQRTSSVFSPYLVSEVASDECFGGGGANDGRGLAVIDRLDKAQSP
                     ADNNIFNDTWSYYYKAIFRCNNLLQKLPTIPTWKSKSDSVNNVTKKRIEGETRFLRAL
                     MYFDLVRLFENIPLLTVPSADYIPQADPSDVYKLIVSDLQFAAENIPANAYPKAQAAT
                     NDGRVTRYAAEALLARVYLFYTGYYAKDDLGVTRQNVLAGLEDVIASNEFDTIPYKKL
                     WPAASYVPVPASNTLDKSGYAGKGNKEVVFAQKFNSTSDWNGNSDGNGCLVMMGMRGC
                     NFSPYGKGWGACTVNPQLVNAFPNGDKRRTASVIDLVGEGIESSFNIVDQKEYTGYTI
                     KKYTPTVLPDNKTFDLGGIKDFQISQDQDFIQIRFADVLLMAAELESPHAQDYLDKVR
                     KRAGLASVPVSKAAIMTERRFEFAFEGIRYWDLLRSGLDNAANAIAASAQTVKSGGVT
                     DNITYSVTAIKATKGFMQIPNTQITLSKGTLKQNQGW"
     gene            complement(2391..>3458)
                     /locus_tag="VI413_14245"
     CDS             complement(2391..>3458)
                     /locus_tag="VI413_14245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018074795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY6915834.1"
                     /translation="AGAYQKALANKDLKWETSEQTNIGIDARLLRNRLSVTGDFYIKT
                     TKDWIVQRPNPVTSGFDAQWINGGNVKNTGVELALNWNDNIGDFKYNIGVNGAYNKNV
                     VGEIPTSDGLIHGYTNMLYANSEEFYRAENGHALGYFWGYKTAGLFQNQADIAAWKAA
                     GNGILQSEVQPGDVKYVDQNHDGVIDTKDKVDLGNGIPPVNVGFNLGFQYKNFDFSVN
                     AAGVIGNKIVQAYGQTGAQSNYTTEILSRWTGDGTSNRIPRVTVNNINWQFSDLYIHA
                     GDYLRISNISLGYDFAKLIKLKAISQCRIYGSVQNAFTFTKYNGMDPEIGYGVEGWVS
                     GVDLGYYPRPRTVLVGVNLKF"
BASE COUNT         1029 a          758 c          582 g         1089 t
ORIGIN      
        1 cagtttgcaa ctgcaccacc ttgtgctttg tcatgcaaaa cttgagctcc ataagttatc
       61 aactcttttg atccggggaa caacataaat gttccggttc ctgacaaatc aggaaacatt
      121 ttattatctg atttgaaatt agcattgcct ataagatcaa aagtcatggt accgtaatcg
      181 ccctttgaaa ctccagccca acctatatct gaaaagttag gatcccactc ccatccagtt
      241 cctccaaagt aaaatggact cgtgaaacca cctttgctta cgccattatc atctatagcc
      301 aacacccata tttttgattt gtttattcct cctgtgagat cagtccacat ttgcccgctt
      361 acatatgcct cgtctatggt tgtaacttcg aaagcataag gattggcagt aacaattccg
      421 ccgggagttt ctacactgta cataatagta tcttttccag gaaatggaat aacaatcgta
      481 tcggtcattt tgactgaagt tcctacagga gttacccaga atggctgagc atttggggtc
      541 agactcttca ggatgaattt attaggattt gtagcatcct ttgtcacgct gaattttaaa
      601 gcacttttgt ctaaaggcgc ttttaattca tattgatcag gtgtacatgc aaaaaataca
      661 attgtcacca gagacaatat cgaaaataat ttaaatattt tgttcataat aatcatcatt
      721 taaagttaat tttaccagcc ttgattttgt ttcaatgttc ctttcgaaag tgttatctgt
      781 gtattcggaa tctgcataaa accttttgtg gctttaattg cagtcacgct ataagttata
      841 ttatcagtaa caccaccact cttaactgtt tgagcagatg ctgcaatcgc attagcagca
      901 ttgtctaacc ctgaacgtaa taaatcccaa tagcggatac cttcaaaggc aaactcaaaa
      961 cgacgctcag tcataatagc tgcttttgaa acaggcactg atgctaaacc cgcacgttta
     1021 cgtactttat caagatagtc ttgtgcatgt ggactttcca attcagcagc cattaacaat
     1081 acatcagcaa agcgaatttg gataaagtcc tgatcttgag aaatttgaaa atctttaatt
     1141 ccgcctaaat caaatgtttt attatctgga agaactgtag gagtgtattt tttaatcgta
     1201 tatcctgtgt actctttttg atcaacaatg ttaaatgaac tttcaatacc ttcgccaaca
     1261 aggtcaatca cagaagctgt tctacgttta tcaccgttag gaaatgcatt tacaagttgt
     1321 ggatttactg tacaagcccc ccaacctttt ccataaggcg aaaaattaca tccacgcata
     1381 cccatcatga caagacaacc gtttccatcc gagtttccat tccaatcgga tgtgctattg
     1441 aatttttgtg caaacacaac ttctttattt ccttttccag cgtaacccga tttatccaac
     1501 gtgttgctgg caggaacagg aacataactt gctgccggcc aaagtttttt gtaaggtata
     1561 gtgtcgaact cattgctggc aattacatct tccaaaccag ccaagacatt ttgtcttgtt
     1621 accccaagat cgtcttttgc atagtaacca gtgtaaaata aatatacacg ggctaataat
     1681 gcttctgctg cataacgtgt tacacgtcca tcgtttgtag ctgcctgagc ttttggatag
     1741 gcattagccg gaatattttc tgctgcaaac tgcaagtcgc tcacaatcaa tttatataca
     1801 tctgaaggat ctgcctgagg aatataatct gctgatggta cagtcaataa cggaatattt
     1861 tcaaacaaac gcactaaatc aaagtacata agtgcacgca aaaatcgtgt ttctccttcg
     1921 atacgttttt ttgtaacgtt attaactgaa tcgcttttag atttccacgt tggaatagtt
     1981 ggtaattttt gcaataaatt gttgcaacgg aaaatagctt tataataata actccatgta
     2041 tcattaaaaa tattattatc agccggcgat tgcgctttat cgagtctatc aatcaccgct
     2101 aaccctctac cgtcgttagc accacctcct ccgaaacatt cgtcagatgc aacttcggaa
     2161 accaaatagg gtgagaatac ggaacttgta cgttgatatc catcgtagca tccgaccaat
     2221 gccatttcag catcagcttc tgttttgtaa aaattttcat caagaaggct tgagggcggc
     2281 actgaattca gaaaactatc tgaacatgac gaaaaaagac caagggtcaa tacccctgct
     2341 atcagtatat ttaatttgaa tctcttcata acaatatgta tttaaaatat ttaaaatttg
     2401 aggttaactc caaccaatac agttcttgga cgtggataat atcctaaatc aacgcctgaa
     2461 acccagcctt ctacaccata tccaatttcc ggatccatac cattgtactt ggtaaatgtg
     2521 aatgcattct gaaccgaacc atatatacgg cactggctga tggctttcag tttaataagt
     2581 ttagcaaaat cgtaaccaag gctaatattg ctgatacgca aataatcacc tgcatgaata
     2641 taaagatctg agaactgcca gttaatgttg ttgactgtta cacgtggaat acggtttgat
     2701 gttccatcac ctgtccaacg gcttagaatc tcagttgtat agttcgattg cgcaccagtc
     2761 tgaccatacg cttgaacgat tttgttgcct atcacaccgg cagcatttac actaaaatca
     2821 aagtttttat actgaaaccc aagattaaat ccaacattca caggggggat accattgcct
     2881 aaatcaactt tatctttggt atcaataaca ccatcatgat tttggtctac atatttcaca
     2941 tcacccggtt gcacctccga ttgtaagatt ccatttccgg cagctttcca tgcagcaata
     3001 tctgcttggt tctggaaaag accggccgtt ttgtatcccc agaaatatcc aagtgcatgc
     3061 ccgttttcgg cacgatagaa ttcttcagag ttagcataca acatattggt gtatccgtgt
     3121 atcaacccat ctgaggtagg aatctctcct acaacattct tgttataagc gccattcact
     3181 ccaatgttgt atttaaaatc accgatatta tcattccagt taagagctaa ttcaaccccg
     3241 gtgtttttta cgttgccacc attaatccat tgtgcatcaa atccggatgt taccgggtta
     3301 ggtctctgca caatccagtc ttttgttgtt tttatataaa aatctccagt tactgacaaa
     3361 cgatttctta acaaacgggc atcaatccca atatttgttt gttcggatgt ctcccatttt
     3421 aggtctttat ttgctaatgc cttctgataa gctccagc
//
LOCUS       DATDNM010000853         4064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2130142, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000853 DATDNM010000000
VERSION     DATDNM010000853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2130142"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VI413_14250"
     CDS             <1..326
                     /locus_tag="VI413_14250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 28 protein"
                     /protein_id="HEY6915835.1"
                     /translation="NERMGGYVNNIYVKNINAGKMDLGILGIETDVLYQWKDLVPTYV
                     RKLTPIKNIYLENIKATNVKFESRILGQKELPVENVFLKNVAADTIRDKKQVHENVIN
                     FKKEK"
     gene            372..1718
                     /locus_tag="VI413_14255"
     CDS             372..1718
                     /locus_tag="VI413_14255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915836.1"
                     /translation="MKTTRYVTLLIVALFPVSLVLNAQIGKRFPSERKEIKDPVTGQK
                     LIFLTSTPAGDSKIYQTHNQWTSDGQWLIFRSNRVKGEAMAVNGKSGEMVQVTEGGYT
                     GMLNVARKSMKLYFMRKMENDSATLAIVEVDLAKLFTDSKAGILKPATEYQRICGITP
                     PSLEAGGDMALDGGEEWVWFRVGKEEAQKYLAADVKIEPSFGPRKMGAGPAGIAGMNV
                     KTGEIKYVVSVPFQIGHIQTNPWVPGQIVFCWETGGKSPQRTWIVNSDGSGLRPLYAE
                     APYEWITHEAVISKDEVAIAIMGHRKIENNSDTTTVKGTDANGVNPGQDASWGDCGTR
                     EKPSGLGIVNINTREMVIAGQTPDGSGFWHVNGSADKRFVVGDDFARNIYLIDRRSHE
                     MMLLSAGHKATAADHPHPTFSPDGTKIEIQSAMLSADNHSMNICVIPVPKKWLNRK"
     gene            1741..3351
                     /locus_tag="VI413_14260"
     CDS             1741..3351
                     /locus_tag="VI413_14260"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915837.1"
                     /translation="MKNKIYFILIFCLFPVLQSQAKNYFVATNGNDTTGTGTIAAPFA
                     TIMKAHAYVVAGDTVFVRGGTYVIKESQIYSKVSIWAYINYLDKSGTSATKRICYWAY
                     PGEHPIFDLSNVKPANYRNTVFYTTGSWLHIKGLEVIGVQVTILTHTQSECFRNEGSN
                     NIFENLSMHDGMAIGFYLTKGANNLVKNCDAYRNWDSVSESGVGGNTDGFGFHPAKGG
                     TGNKITGCRAWFNSDDGYDCINASESVVFENCWAFYNGYTSAFVSRGDGNGFKAGGYG
                     QAPVVSALPSPIPAHTVRFCMAYRNKANGIYANHHVQTGNNWYNNTAYRNSTNYNMLS
                     QKITKSTKTGNDTTLDCAGINHILHNNLSYKYSTQRDTLNLGSSVNTYNSFSANSGVV
                     VDANDFLSIDESLLISARPADNSLPNVNFLKLKQGSDLVDRGMNLGFTFYGAAPDLGA
                     FETQYLTALANPEFDSPSLFYPNPVQRNIYFTQQAKLVEIMDIQGKMVLTAENIQQLN
                     LSAFKTGIYLIKVKLSNSTTVMQKIIKI"
     gene            3437..>4064
                     /locus_tag="VI413_14265"
     CDS             3437..>4064
                     /locus_tag="VI413_14265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009121625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1565 domain-containing protein"
                     /protein_id="HEY6915838.1"
                     /translation="MRRYTFLVLIFCFLFVSKNQAKTYFVAVNGNDTTNPGTIVAPFA
                     TITRAQKDVESGDTVYVRGGKYEMAERQIARKQRIWAMMHLLNKSGKEGQRINYWAYQ
                     NERPVFDMSNVKPLNQRVMAFNVTGSWIHLKGLEVVGTQVTILGHTQSECFHNEGSHN
                     IYEQLSMHDGQAIGFYLIRGSDNLILNCDAYRNWDYTSEGGRGGNADGF"
BASE COUNT         1256 a          739 c          938 g         1131 t
ORIGIN      
        1 caaatgaacg tatgggcggc tatgtgaaca atatctatgt caaaaacatc aatgccggta
       61 aaatggattt gggtattttg ggtatagaaa ctgatgtttt gtatcagtgg aaagatttgg
      121 taccaactta tgtacgcaaa ctaacaccga taaaaaacat ttatctcgaa aatataaaag
      181 ctacaaatgt aaagttcgaa tccagaattt tgggacaaaa agaattgccg gttgagaatg
      241 tctttctgaa aaatgtagcg gcagatacca ttcgggataa aaaacaagtc catgaaaatg
      301 tgattaattt caaaaaggaa aaataaatag attgatttgt aatagaagta ctatatattg
      361 ttattaaatt catgaaaacc acgcgatacg ttacgctcct cattgttgct ttatttccgg
      421 taagtttagt cttaaatgca caaattggca agcgttttcc gtccgaacgg aaagaaatta
      481 aagacccggt taccggtcag aaactgattt tcctgacaag tactcctgca ggcgattcca
      541 aaatatatca aacacataac cagtggactt ccgatgggca atggcttatt ttccgttcca
      601 accgcgtgaa aggcgaagcc atggcggtga atggaaaatc gggcgaaatg gttcaggtta
      661 cagaaggagg ttacacgggc atgctcaatg tggcccgtaa atcgatgaaa ctctatttta
      721 tgcgtaaaat ggagaacgat agcgccacac tggctattgt agaggtagat ttggctaagc
      781 tgtttactga tagcaaagcc ggaatactca aacctgctac tgaatatcaa cggatttgtg
      841 gtattactcc accatcactc gaagcgggcg gagatatggc cctggacgga ggtgaagaat
      901 gggtttggtt tcgggttgga aaagaagaag ctcaaaaata tctggctgct gatgtgaaaa
      961 tagagccgag ttttggaccg cgaaaaatgg gagcggggcc tgccggaatt gccgggatga
     1021 atgtaaaaac aggtgaaatt aaatatgtag tttcggttcc gtttcaaata ggacatatcc
     1081 aaacaaaccc gtgggttccg ggacaaattg ttttctgttg ggaaacaggt ggaaaatcgc
     1141 cacaacgaac ttggattgtg aattccgatg gctcagggtt gcgtccgctt tatgctgaag
     1201 ctccttacga atggattacc cacgaagcag ttatcagcaa ggacgaagtg gctattgcca
     1261 ttatgggaca ccggaaaatt gaaaacaatt ctgatacgac aaccgttaag ggaaccgatg
     1321 caaatggagt gaatccgggt caggatgcca gttggggcga ttgcggaacg cgcgaaaaac
     1381 catccgggtt aggcattgtc aatatcaata cgcgcgaaat ggttattgcc ggacaaacac
     1441 ctgacggaag tggattctgg cacgtgaatg gctcggcgga taagcgtttt gtggtgggtg
     1501 acgattttgc acgaaacatt tatctgattg acagaaggag tcatgaaatg atgcttctgt
     1561 cggccggaca taaagcaact gcagccgatc atccgcaccc tacttttagt cccgacggaa
     1621 cgaaaattga aattcaatct gccatgcttt cagccgataa tcactcaatg aatatttgcg
     1681 tgattccggt accgaaaaag tggttgaaca gaaaatgaac gatattgtta caactctacc
     1741 atgaaaaata aaatttattt cattttgatt ttctgtttgt tcccggtatt gcaaagtcag
     1801 gccaaaaatt atttcgttgc taccaatgga aacgatacca ccggaacagg cacaattgct
     1861 gctccttttg caactattat gaaagcacat gcgtatgtag ttgcaggaga tactgttttt
     1921 gttcgtggcg gaacttatgt gataaaagaa tcacaaattt attcaaaagt gagcatttgg
     1981 gcctacataa attatctgga taaaagtggt acttcggcca ctaagcgcat ttgctactgg
     2041 gcctatccgg gggaacatcc gatttttgat ttatcgaatg tgaaacctgc aaattaccgc
     2101 aatacggttt tttatacaac cggttcgtgg ttgcatatca aaggacttga agtgattgga
     2161 gtgcaggtta ctattctgac gcatacacag tcggagtgtt ttcgcaacga gggaagcaac
     2221 aatatctttg agaatctgag catgcatgat ggtatggcca ttggttttta tctcaccaaa
     2281 ggtgcaaaca acctggtgaa aaactgcgat gcctatcgga attgggatag tgtttctgaa
     2341 tcgggtgtag gtggaaatac cgatggtttt ggatttcacc cggcaaaagg tggtaccggc
     2401 aacaaaatta ctggttgccg cgcatggttc aacagcgatg atggctacga ttgtattaat
     2461 gcttctgaat ctgttgtatt cgaaaattgt tgggcttttt acaatggtta tacttctgcg
     2521 tttgtaagca gaggggatgg caatggattt aaagccggcg gttacgggca ggctccggtg
     2581 gtatcggctt tgccaagccc cattccggcc catacggtcc gtttttgcat ggcttatcgg
     2641 aacaaggcaa atggtattta tgccaatcat catgttcaaa ccggaaacaa ctggtacaac
     2701 aacacagctt accggaattc gaccaactac aatatgttga gccagaaaat aacaaaaagt
     2761 accaaaaccg gtaatgatac tacactggat tgtgcgggta tcaatcatat cctccataat
     2821 aatctttcat ataaatattc aacccaaaga gatacactaa atctgggaag cagtgtaaat
     2881 acctacaatt cattttctgc gaattccggt gtagttgtag atgctaacga ttttttgagt
     2941 atcgacgagt cacttttaat ttcggcccgt ccggcagata atagtttacc caatgtaaat
     3001 tttctgaaac taaaacaagg tagtgatttg gttgatagag gtatgaatct tggtttcaca
     3061 ttctatgggg cagctccgga tctgggcgca tttgaaacgc aatatctaac tgccctagca
     3121 aatccggaat ttgacagccc gtctttattt tatccaaatc cagttcagcg aaacatatac
     3181 tttactcaac aagctaaatt ggtggaaatt atggatattc aggggaaaat ggttttgact
     3241 gctgaaaata ttcaacaact gaatctttcg gcatttaaga caggcattta tctgattaaa
     3301 gtaaaactat caaatagcac tacagtgatg caaaaaatta tcaaaatttg atgtatctat
     3361 atcaaatcaa ggaagattta ggtgaccgga aataaattat ttgcattatt tttaccgcct
     3421 gaaaaataat cacattatga gacgatatac ttttctggta ttgatttttt gtttcttgtt
     3481 tgtttcaaaa aatcaggcaa aaacatattt tgtagctgtc aatggtaatg atactaccaa
     3541 cccgggaaca attgttgccc catttgcaac aataacccgt gctcagaaag atgttgagtc
     3601 aggcgatacg gtctatgttc ggggtggaaa gtacgaaatg gctgaacgtc agattgcccg
     3661 gaaacaacga atttgggcaa tgatgcattt gctcaataaa agtggaaaag aagggcagcg
     3721 cataaattat tgggcttatc agaacgaaag gccggttttt gatatgtcga atgtaaagcc
     3781 attaaatcaa cgtgttatgg catttaatgt caccggttcc tggatacatc ttaaaggctt
     3841 ggaagttgtt ggcactcagg ttactattct gggccatact cagtccgaat gttttcataa
     3901 cgaaggcagt cataatatat acgagcaact ttcgatgcat gatggacaag ctattggatt
     3961 ctatttgatc agagggtctg acaatttgat tttgaattgc gatgcgtatc gaaactggga
     4021 ttatacctca gaaggtggca ggggtggaaa tgcggatgga tttg
//
LOCUS       DATDNM010000854         2495 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_848076, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000854 DATDNM010000000
VERSION     DATDNM010000854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_848076"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..874
                     /locus_tag="VI413_14270"
     CDS             <1..874
                     /locus_tag="VI413_14270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005843064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEY6915839.1"
                     /translation="YDHDLGFLVFNTFGNAYRLTGNPAYKQIIIRVADSLATLYNPKV
                     GTILSWPRAIKENKWPHNTIIDNMMNLEMLFWAAKNGENAELYNIAVFHANNTMKNQF
                     KPDYSCYHVALYDTITGAFIKGITHQGYKDSSMWARGQGWAIYGFTTCYRETKDIKYL
                     EFVQKAADAYLKRLPKDYIPYWDFDDPGIPNAPRDASAAAVVASGLLELSTYVKTEKG
                     AQYKQAAVEMLKALSTPEYQSRDKNPSFLLHSTGHWPKKSEIDASIIYADYYYIEALL
                     RLKKLNEGKSIIEF"
     gene            complement(953..>2495)
                     /locus_tag="VI413_14275"
     CDS             complement(953..>2495)
                     /locus_tag="VI413_14275"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6915840.1"
                     /translation="KSGKFFDISDHPTLQNGTVYKFVSDNNNNIWIATLTGLFRYNTK
                     TKFLRKYDLSKAMGNNELFDLQIDNYNRLWIATRVGVCFYSLKNNNYVIPNSCKPYQY
                     QCTSIFADKSNNIWFCFNKGGVLQIDNKLQQKQWISTEIGLPENAPSSIIEDKSKNIW
                     IGTQKGLYKLSKTNIIQSFGYEDGLTGLIFCPNSAAKDSKGNLWWANDKGLVNFNYAF
                     NAENKAIPNIVFTDLYINGLRLSIDTLPYINRMSDGNYKVYIKGRTKNNLEFRFAALN
                     FHSTKMNRYSHIIDGIDNEWSKPTENNIVSYKELPIGKHTLKILASNNDGVWTTHPLE
                     IEIEISPYFYETNLFIIIIILLLTAVTFYYTRSHFVNTIEKIKKQFEDSKSKQTTGQQ
                     TLKISEEKSNEIKNSLIRHMVEKKPFLNPELKQADIAAELNFSVHEISQVLNTLIQLN
                     FSDFINSYRIEEVKERIASGKYTRYTVSAIAEQCGFNSKTTFYRAFKKSMGVSPSEYF
                     KDINE"
BASE COUNT          743 a          424 c          468 g          860 t
ORIGIN      
        1 ttatgatcat gatttggggt ttcttgtgtt caatactttt ggcaatgcat accggttgac
       61 aggaaatcct gcttataagc aaataatcat acgtgttgca gactcacttg ctaccttgta
      121 taacccgaaa gtcgggacta tattatcctg gccacgagct atcaaagaga ataaatggcc
      181 ccacaatacg ataattgata acatgatgaa tctggagatg ttgttttggg ctgcaaagaa
      241 tggggaaaat gccgaattgt acaacatcgc tgtatttcat gcaaacaata caatgaagaa
      301 tcaattcaaa cctgattatt cttgttatca cgtagcactt tatgatacaa tcacaggggc
      361 ttttataaag ggaataactc atcagggcta taaagatagt tcaatgtggg ccagaggtca
      421 gggatgggct atttatggtt tcactacgtg ttacagggag acaaaggata ttaagtacct
      481 cgaatttgtg caaaaagcgg ctgatgccta tttaaagcgt ttgcctaaag attatatacc
      541 ttattgggat tttgatgacc ccggaattcc taacgccccc cgtgatgctt ccgcagccgc
      601 tgtagtggct tccggattgt tggaattgtc tacttatgta aaaacagaaa aaggagcaca
      661 gtacaaacag gctgctgtag aaatgttgaa agcattaagt acgcctgagt atcaaagccg
      721 ggataaaaac ccttctttct tattacattc cacaggacat tggcctaaaa aatcagagat
      781 tgatgcttcc attatatatg ccgactatta ctatattgaa gctttgttga ggctaaagaa
      841 actcaacgaa ggaaagtcaa taattgagtt ttaaagcgtt gaaaataatc aaaaagcgag
      901 gtggttctaa tttagaacca cctcgctttt ttgatatata aacttaatgt ttttactcgt
      961 ttatatcctt aaagtactcc gaaggtgaaa ctcccatcga cttcttaaat gccctgtaaa
     1021 aggttgtttt agaattaaaa ccgcattgct cggcaatagc cgaaacagtg tatctagtgt
     1081 acttgccact tgcaattctt tctttgactt cttcaatcct atatgaattg ataaagtctg
     1141 agaaattaag ttgtatcaag gtatttaata cctgcgaaat ttcatgaaca gaaaaattca
     1201 attcagctgc tatatctgcc tgttttagtt cgggattgag gaatggtttc ttttcgacca
     1261 tgtgtcgaat taagctgttt tttatctcat tacttttttc ttcggatatt ttaagtgttt
     1321 gttgcccggt agtttgtttg ctttttgaat cctcgaattg cttcttgatt ttttctattg
     1381 tattgacaaa atgtgatcgt gtataataaa acgtaactgc cgttagaaga aggataataa
     1441 ttattatgaa cagatttgtt tcataaaaat agggacttat ttctatttca atctctagtg
     1501 ggtgagttgt ccacactcca tcgttgttgg atgcaagaat tttcaacgtg tgttttccta
     1561 ttggcagctc tttatatgat actatattgt tttcagtagg tttactccac tcattatcaa
     1621 tgccgtcgat gatgtgggag taacgattca ttttggtgct gtgaaagttc aatgccgcaa
     1681 atctgaattc gagattattt tttgttcgac cttttatgta gactttatag ttaccatctg
     1741 acattctgtt aatgtatggt agtgtgtcga tagacaatct taacccattt atgtagaggt
     1801 cggtaaatac aatattggga atagctttat tctcggcatt aaaagcataa ttaaaattta
     1861 caagaccttt atcattagcc caccataagt ttcctttaga atcttttgct gctgaatttg
     1921 ggcaaaatat taatccggtt aatccatctt cataaccaaa tgattgaatt atatttgttt
     1981 tgctgagttt gtaaagaccc ttctgtgtac caatccagat gtttttgctt ttatcctcaa
     2041 ttatggatga tggcgcattc tcaggtaatc caatttcagt gctaatccat tgtttttgtt
     2101 gtaacttatt gtctatttga agtacaccac ctttgttaaa acagaaccag atattattgg
     2161 acttatcagc aaaaatagaa gtacattgat attggtaggg tttgcatgag tttggaataa
     2221 catagttatt gttcttcaat gaataaaaac agacgccaac acgtgtcgca atccataatc
     2281 tattgtaatt atctatctga agatcaaata attcattgtt gcccatggcc tttgataaat
     2341 catactttct taggaattta gtcttggtat tgtatctgaa caaacccgtc agtgtggcta
     2401 tccaaatgtt gttattgttg tctgatacaa atttatagac agttccattt tgcaaagttg
     2461 gatgatccga aatgtcgaag aacttacctg attta
//
LOCUS       DATDNM010000855         2884 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1916459, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000855 DATDNM010000000
VERSION     DATDNM010000855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2884
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1916459"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..821
                     /locus_tag="VI413_14280"
     CDS             <1..821
                     /locus_tag="VI413_14280"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6915841.1"
                     /translation="NGENEITDKQTADNFRKTAIALKTELHRFTLPAEYNEDHTDINP
                     LVQLNSVSVRYGEKKVLDKVSWTIQQGEFWQLVGPNGSGKSTMLSIIIGDNPRGYGQN
                     MILFGRKKGSGESIWDIKRQIGYFTPAMIEQFTRVDTVENMIISGLMDSVGLYTKPTD
                     LQKDIAKKWIERLGANYLNRTFQSLSLGQQRMVMVARAMVKHPPLLILDEPTIELDDE
                     NSGLFIDMVNAIASEKEIAIVYVSHRDEQGLQPDKIFELVSTPNGHTGVVIEIT"
     gene            1262..1819
                     /locus_tag="VI413_14285"
     CDS             1262..1819
                     /locus_tag="VI413_14285"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEY6915842.1"
                     /translation="MHCLLDKHNIHPDDLEPVIDIEGKIQRFITETPHDELHDFKIMY
                     DYRFRKKNGSYIRLLLQQIRIPEKKSSLSHKIIGIVCDISYLKSDGTPSFSILNVRET
                     TSLQYNSQDEDSDFSLNAFSKREREIISLIICGLSSREIASKLFISIDTVKNHRKSIL
                     TKSNCSNSIQLFNKCVHSGWDKLYS"
     gene            complement(2146..>2884)
                     /locus_tag="VI413_14290"
     CDS             complement(2146..>2884)
                     /locus_tag="VI413_14290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915843.1"
                     /translation="MLTANVQKITLKSSIKAVLAGITTGFFTPNRIGELVGRVMWLNA
                     ENRKAGVTMSAVNSLTQNLVMVLCGVPACFIYFYSTTSALEVDIENFLLILMAFLSLF
                     GLLYFYLPKLSEYLALTNIASKISSYTVGFNAFTRVDLMKIMSISLLRYFVFGTQFFL
                     MLRFFGIQLRPLEALIAIPTNYLFVTFSPSIAFSEAAVRSSYAVLFISSYSGQVVNIA
                     LAGISIWVANFVIPMLIGSLVMVGRKV"
BASE COUNT         1027 a          578 c          481 g          798 t
ORIGIN      
        1 taaacggaga gaacgaaatt acagacaaac aaactgccga caattttcgc aaaactgcaa
       61 ttgctctgaa aacagaacta caccgcttca ctctgcctgc cgaatataac gaagaccata
      121 cagatataaa tccattagta caactgaatt cagtttcagt tcgatatgga gaaaaaaaag
      181 ttttggataa ggtgagctgg accattcagc aaggtgaatt ctggcaactt gtgggaccaa
      241 acggttccgg gaaaagcaca atgctttcaa ttattatcgg agacaatcca cgcggatatg
      301 gccagaatat gattcttttc ggtcgaaaga aaggttccgg cgaatcaatt tgggatatca
      361 aacggcaaat cggctatttt accccggcaa tgattgagca gtttacgcgt gtggataccg
      421 tggaaaatat gattatttca ggattaatgg attctgtggg actttacaca aaacccaccg
      481 atctacaaaa ggacattgct aaaaaatgga tagaaagact aggcgcaaat tacctcaatc
      541 gaacattcca aagcctttcg cttggtcagc aacgcatggt aatggtagcc cgcgccatgg
      601 taaaacatcc gccgctgctc attttggacg aaccaaccat agaacttgat gacgaaaaca
      661 gtgggctttt tattgatatg gtaaatgcaa ttgcctctga aaaggaaatt gcaattgtct
      721 atgtttccca ccgcgacgaa caaggtctgc aaccagataa aatttttgaa ctagtttcaa
      781 caccaaacgg acacacggga gtggtgattg aaataacata atattgaatt ctggtccccg
      841 ataataaatt cgcacatcta ttttatcata acatcttgcc aaaaagcgct atagctacaa
      901 acattttttc attttaagaa aacaatttta tatttaatat tgtttaacta ttccaggcct
      961 tatcagaaag atcccagatt tcaacaatct atattttatt gctggtttta atttatttta
     1021 aaaacttatt aaatctgatt gttttatgaa ctcaactgta ttttcgaatt taaaagtccg
     1081 atggcaagat tcagacttac atatatttaa ggaactctca caaaattccg ttgtttttga
     1141 tgatttagtt caactattac aaccaggaaa acatttcatt tttattttaa atgaaatcca
     1201 gtctaaattt gaatgggtaa gcccatccgt cacaaatata attgattata acgaaagtga
     1261 attgcactgt ttacttgaca aacataacat ccaccccgac gatttggagc ctgttataga
     1321 cattgaagga aaaattcaac gattcattac cgaaacgcca cacgatgaac tccacgattt
     1381 caaaataatg tacgattata ggtttagaaa aaaaaatggt agctacatca ggctgctatt
     1441 gcagcaaatc cgtatacccg aaaaaaaatc atctctttcg cacaagataa ttggaattgt
     1501 ttgtgatatt tcctatctaa aaagtgatgg cactccatca ttttccattt taaacgtaag
     1561 agaaacaact tcattacagt acaatagcca ggatgaagac tctgattttt ctctaaatgc
     1621 attctccaaa cgagaaagag aaattatttc tctaattatc tgcggattat cttcccggga
     1681 aatcgcatca aagcttttca tctccattga cacggtaaaa aaccatagaa aaagcatact
     1741 tacaaagtcg aattgcagca attcaattca attattcaat aagtgtgtcc attcaggctg
     1801 ggataaacta tactcataat gacatagcaa atccaatgca tgcaatatta tttttgaaaa
     1861 atgaccactt agggctattg tgtagtattt tttatgacgc tatctttgct actcaacact
     1921 ggtaataaat actttcggtt accggaaata aaaaaggaat gaataaataa ctgtgtaagt
     1981 ttattgggta ttcaatacac taatatacat aacactaagt tgtatataaa gccttttaaa
     2041 acagaaaaac ctaacctaac tttctatgat tttctctgtc tgattattaa cattcgcggt
     2101 ctcacacaaa actgaggccg cttttttatg cttctctccc aaaaatcaca ccttccgccc
     2161 gaccattacc aaagaaccaa taagcattgg aataacaaaa ttcgcaaccc aaatactaat
     2221 accggcaaga gcaatattaa ccacctgccc ggaataagaa ctgataaata gaacagcata
     2281 cgaactccgc actgctgcct cagaaaaagc tatggaaggc gaaaaagtaa cgaataaata
     2341 atttgtagga atagctatca gagcttctaa aggccgcaac tgaattccga agaaacgcaa
     2401 cattagaaaa aattgcgtgc caaaaacgaa ataccggagc aatgaaatac tcataatctt
     2461 cattaaatca acacgcgtaa acgcattaaa tccgaccgta taactactta tttttgacgc
     2521 aatattagta agtgctaggt attcgcttaa ttttggcagg taaaaataca acagtccaaa
     2581 caaggacaaa aaggccataa gaatcaacag aaaattttca atatcaactt ccaacgcact
     2641 ggttgttgaa tagaagtaaa tgaaacaggc aggcacacca cataaaacca tcaccagatt
     2701 ttgggtaagg ctgttcacag cactcatggt tactcccgcc ttacggtttt cggcgttcag
     2761 ccacatcacc cgcccaacca attctccaat gcgattagga gtaaaaaaac cagtagtaat
     2821 gcctgctaat acagctttaa tagaagactt gagagtaatt ttctgaacat ttgcagtcag
     2881 catc
//
LOCUS       DATDNM010000856         2718 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_634693, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000856 DATDNM010000000
VERSION     DATDNM010000856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_634693"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..326)
                     /locus_tag="VI413_14295"
     CDS             complement(<1..326)
                     /locus_tag="VI413_14295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007211445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY6915844.1"
                     /translation="MKRFPFAILLVAILSFSASRAENPIVQTNYTADPAPMAHNGTVY
                     LYTSHDEDVTVNNFFSMNDWKCYSTTDMVNWTDHGSVLSYKTFEWSRGDAWAGQCIYR
                     NGKFYY"
     gene            complement(334..>2718)
                     /locus_tag="VI413_14300"
     CDS             complement(334..>2718)
                     /locus_tag="VI413_14300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006799189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6915845.1"
                     /translation="FVKTDLDKSYRDATLDITAKIKNYNDKTGKAQKFTATLYDKEGK
                     EIAKGSANGTPLKANQEETLKVKMQITNPAKWTAETPDLYTVVLTSSEGEILSSKIGF
                     RKIEIKGRVFTVNGVPIKLKGVNRHEHWSDVGHAVTEEQMIRDLEVIKQGNCNHVRTC
                     HYSDNPRWYELCDEWGIWLVAEANMEYHGYDNRFDEEPTIKAAIIDRNVANTENFKNH
                     PSVIIWSLGNEGGGISTNLKAAMAAVKAIDSTRFVHYERFGTGKNNPADLDGRMYGTA
                     EDYARVAQDKSLTKPFYICEFVHAMFNSMGSLDEYSKVFDNNPEILGGAIWEFQDQAL
                     WNKRDPNHPILAYGGGFGEAPNDHYFIHKGVVSYDRSTEGNNVKPHYPEMKKAFQWID
                     TELTDPINGNILIKNKYQFITLEGFEASWSLSENGKEIDNGKIRMHPTWGKGLFAANI
                     PYKIEHPKAGAEYFLRISYKQNEKTRWADKGFEVASAQFKLPVNTVPAAETKVTLPVK
                     LVQNKEITTVTGKDFAVSFDKKTGFMSQLVQNGTNLLTTDGGPQLHLWRAGHRTDDDW
                     AFRQWEKFGVTTLKYTLVDFKVETVDNASVKVTSTTKADGKEGFGVYHTATYIVKGDG
                     SITVDNKVQFVGFQINLAKIGVRMMLDKKLDRMAFFGCGPFENYSDRKSAAEEGLYEI
                     GVNEQYTYEKPMERGNHEDVRWAKLSGKDMPSLLVESDAKLMQVAALPHTDEQMQPVE
                     YKIDLPASTATVLSISTKTLGVGSNSCGPQPLERFKVSAENTSFTYTLKLTNSK"
BASE COUNT          678 a          611 c          546 g          883 t
ORIGIN      
        1 taataataaa acttgccatt tctgtaaata cactgaccag cccaggcatc gccacgcgac
       61 cattcaaaag tcttgtacga caaaactgag ccgtgatcag tccagtttac catatcggtt
      121 gttgaataac atttccagtc attcatacta aagaaattat tcactgtaac atcttcatca
      181 tggcttgtat agagatagac agttccattg tgcgccattg gtgcaggatc ggcagtatag
      241 tttgtctgga caattggatt ttcggctctg cttgcagaaa aggataagat tgctacaagt
      301 aaaatcgcaa agggaaatcg cttcatgctg gttttatttt gaattcgtta gttttaatgt
      361 ataagtgaac gatgtgtttt cggcactaac cttgaatctt tcgagaggct gaggaccaca
      421 actgttcgag cctactccca gtgttttggt agaaatgctc aatacagtag ccgtgctggc
      481 cggtaaatcg atcttatatt ctaccggttg catttgctca tcggtatgag gcagagctgc
      541 tacctgcatc aattttgcgt ccgattctac caacaatgaa ggcatgtctt taccacttaa
      601 ttttgcccaa cgaacatctt catggttgcc acgttccatt ggcttttcgt aagtatattg
      661 ctcgtttaca ccgatttcat acagtccttc ttcggctgca cttttacggt cggagtagtt
      721 ttcaaatggt ccacaaccaa aaaatgccat ccgatcgagt tttttatcga gcatcatgcg
      781 cactccgatt ttagccagat taatctggaa tcctacaaat tgaactttat tgtccacggt
      841 tattgagcca tcgcctttta caatataagt ggcagtatgg taaacaccga aaccttcttt
      901 tccatcggct ttggtagtag aggtcacttt tacggaggca ttatccactg tttccacttt
      961 aaaatcaacc aaggtgtatt tcagggtcgt tacgccgaat ttttcccact gacggaatgc
     1021 ccagtcgtcg tcggtgcggt gacctgcacg ccacaagtgg agctgagggc caccatcagt
     1081 cgtcagaaga ttagttccat tttgcaccag ttgactcata aaacctgttt ttttatcaaa
     1141 gcttactgcg aaatcttttc ctgttactgt ggtgatttcc ttgttttgaa ccagttttac
     1201 aggcaatgtg acttttgttt ctgctgcagg aactgtattg acaggtagtt taaactgagc
     1261 ggaagccacc tcaaatcctt tgtcagccca acgtgttttt tcattttgct tgtacgaaat
     1321 gcgcaggaag tattctgcac cggcttttgg gtgctctatt ttatagggaa tattggctgc
     1381 aaaaagtcct tttccccaag tagggtgcat tcttattttt ccattatcaa tttcttttcc
     1441 gttttcgctc aggctccacg aagcctcaaa accttccagc gtaataaact ggtatttatt
     1501 tttaatcaga atgtttccat ttattggatc ggtaagttcg gtgtcaatcc actggaaagc
     1561 ctttttcatt tcgggataat gcggttttac attgtttcct tctgttgaac gatcgtacga
     1621 aactacacct ttgtgaatga aataatgatc gttgggtgct tcgccaaaac caccgccata
     1681 agccagaata ggatgatttg gatcgcgttt gttccacaat gcctgatcct gaaactccca
     1741 gatggcccca cccaaaattt caggattatt gtcaaacact tttgagtatt catcaagcga
     1801 tcccatggaa ttgaacattg catgaacgaa ctcgcagata taaaatggct tggtcaggct
     1861 cttatcctgc gcaacgcggg cataatcttc ggctgtacca tacatacgtc catccaaatc
     1921 ggcaggattg tttttgcctg ttccaaaacg ctcgtaatgt acaaaacgag tggaatcgat
     1981 agcttttacg gcagccatag cagctttcag gttggtactg ataccaccgc cttcgttgcc
     2041 gagcgaccag ataatcaccg atggatgatt tttgaaattt tctgtattgg ctacgttgcg
     2101 gtcaatgatg gcagctttaa tggttggctc ttcgtcaaat cgattgtcgt atccgtgata
     2161 ttccatatta gcctcggcca ccaaccagat tccccattcg tcacaaagct cataccagcg
     2221 tggattgtca gagtaatggc aggtgcgcac gtgattgcaa ttaccttgtt taatcacttc
     2281 cagatcacga atcatttgct cttcggtaac cgcatgtccc acatccgacc agtgctcatg
     2341 gcggtttacc cctttgagct taataggaac accatttacc gtgaaaacac gacctttgat
     2401 ttctatcttg cggaatccta ttttcgatga taatatctca ccttccgaag aagtcagaac
     2461 aaccgtatat aaatcaggtg tttcagccgt ccattttgca ggattggtga tttgcatttt
     2521 tacttttaaa gtttcctcct gattggcttt cagcggagtt ccgtttgcac tgcctttggc
     2581 aatttctttg ccttctttgt cgtaaagtgt ggctgtgaat ttttgtgctt tacctgtttt
     2641 atcgttgtaa tttttaattt ttgctgttat atcaagtgtt gcatcccggt agctcttatc
     2701 taaatctgtt ttcacaaa
//
LOCUS       DATDNM010000857         3397 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_421478, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000857 DATDNM010000000
VERSION     DATDNM010000857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3397
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421478"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VI413_14305"
     CDS             complement(<1..233)
                     /locus_tag="VI413_14305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005855607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915846.1"
                     /translation="MGFNDFLKKIIGNKAQRDLKEISPYVDKVKAVYEEIIKLSNDEL
                     RARTEALKIRIQDYVATEVNRIAELKASIDETE"
     gene            495..3254
                     /locus_tag="VI413_14310"
     CDS             495..3254
                     /locus_tag="VI413_14310"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF012532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEY6915847.1"
                     /translation="MTTLKLVQDKLPKVYDDLEFLLICLKEVMIESGETDLANDIPWI
                     SAETDFQQKAFTEKHLQLYSTCFQLLNIVEVNGAVQNRRKIEDEKSLSDINGLWSYNL
                     ELLKQNGFSAGQIVDQLHNIHVEPVLTAHPTEAKRTVMLEHLRELYLLVVKRENQMYS
                     RMEQNQIRKNMKIILHRIWRTSDIYTEKPDVSSELDNIIHYLTQVFPEVIKLHDRRLI
                     QAWQQAGFDQHLIRKADSFPKITFGNWVGGDRDGHPLVTADVTRRTLMKLREKAFEVI
                     RRELLGLQKNLSFNVVIGQTSSVFQKRYSHLYQEIKEHRDGFKALYKGEIFKQILEFL
                     IVKIPVSIGRGKFSEDEISYRLPSELIADLYLLKKALIDFGASEIAYTDMNETIRVVT
                     TFGFHLAKLDIRQNSRFNELALSQLMKAAQLDGDEFLASELNERIEYINAELNSTRPF
                     TLWGTELENEANATIDSYRVIAKHINRYGGEAIGSLIVSMTRNVSDLLVVYLLEREAG
                     LLVNSSDGLASKVHVVPLFETIEDLVHSPQILDEFLSHPVTKNSLKWQQQRDGSATML
                     QQVMIGYSDSNKDGGIFASQWYLYEAQSKMIEIGRKHNVQISFFHGKGGSISRGAGPT
                     HWFLKALPPGSVDGNMRLTEQGETIERKYANNYNAVYNIELLTAGTLSATLLHKNKEV
                     AEHQLVSELNYLANKSMVEYKKLTQLPGFIRFYEKATPIDAIEQSKIGSRPSRRTGTR
                     SLSDLRAIPWVFSWSQCRFNITSWYGVGTTLEEMYEKEPAKFEKLRKSAETDPFIRYV
                     LTNIDSSLAASDETIFKQYASLAADVPESPGFIKLMTDELIRTRRMIDVLLDIPLEKR
                     RKNHYYSTLLRSEAMDALHMHQVSLLDKWRTCTAMGKTTEADHVLIELLSCINAIAGA
                     VGFTG"
BASE COUNT         1056 a          644 c          712 g          985 t
ORIGIN      
        1 atttccgttt catcgatact tgctttcagt tcggcaatac gattcacctc tgtggcaaca
       61 taatcctgaa tacgtatttt caacgcctcg gtgcgtgcac gaagttcgtc attcgacaac
      121 ttgataattt cttcataaac agctttcact ttatccacat aaggtgatat ttccttgagg
      181 tcacgttgag ctttattacc aattattttc ttcaaaaaat cattaaatcc catatattta
      241 tattttatgt gtattccagg ttgtctgttt ttaccatttt tgtcagtttt tcaaaaaaga
      301 ctgacaaaga taagattttt tactcgtaaa attgcctata ttgctaattt attaagcggg
      361 gtgtagtaaa acaaaaagcg ctccaactat cttaaatcag attttgtcag tttatttttt
      421 ttcaacatta atttaatagg gattaaacaa acatatttaa aatatgttta attaaaaaat
      481 agcttgataa atatatgact acattaaaac ttgttcagga taaattaccc aaagtttacg
      541 atgatcttga attcctccta atttgcctga aagaggtaat gattgaatct ggggaaacag
      601 atttagcaaa tgatattccg tggatttctg cagaaactga ttttcagcaa aaagcattca
      661 cggaaaaaca cctccagcta tattctactt gctttcaact gcttaatatc gttgaagtga
      721 atggtgctgt acaaaatcgc cgtaaaattg aggacgaaaa atcgctgtcg gacattaacg
      781 ggttatggtc ttataatctg gaattgctta aacagaatgg attttcagca gggcagattg
      841 ttgatcaatt acataatatc cacgtagaac cagtacttac agcccaccct acggaagcaa
      901 aacgcaccgt tatgctggaa catttacgtg aactgtactt gctggttgtg aaacgggaaa
      961 accaaatgta cagcagaatg gaacaaaacc agatacgaaa aaacatgaag ataatcctgc
     1021 accgtatttg gcgtacatct gacatttata ccgaaaaacc tgatgtcagt tctgaactcg
     1081 ataacattat ccattatctc acgcaggttt ttcctgaagt gattaaactt cacgaccgtc
     1141 gtttgataca agcctggcaa caagcggggt tcgaccagca tttgattcgt aaagccgata
     1201 gctttccgaa aataactttt ggaaactggg ttggcggtga cagggacgga catccgttgg
     1261 ttactgccga tgtaacacgc agaacattga tgaaacttcg tgagaaagcg ttcgaagtaa
     1321 taagaaggga gctgttggga ttacagaaaa atctgagttt caatgtggtg ataggccaga
     1381 catcatccgt atttcaaaaa agatattctc atttatatca ggaaattaaa gaacacagag
     1441 atggttttaa ggcattgtac aaaggagaga tttttaagca gatcctggaa tttttaatcg
     1501 tcaaaatacc cgtttcaatt ggacgcggca agtttagcga agatgaaata agctatcggt
     1561 tgccatctga attgattgct gacctttatc tgttgaaaaa agcattgatt gattttggtg
     1621 catcggaaat tgcttacacc gatatgaacg aaactatccg ggttgtcacg actttcggat
     1681 tccacctggc caaactggat attcgtcaaa atagccgctt taatgaactg gctttgtcgc
     1741 agttaatgaa agctgcacag ttggatggcg atgagttttt ggcttcagag ctcaacgaac
     1801 gaattgaata tataaatgcc gaactgaatt ctaccagacc gtttacctta tggggcactg
     1861 aactggaaaa cgaagccaat gcaaccatcg attcttatcg tgttattgcc aaacatataa
     1921 acaggtatgg tggtgaagcc attggttcac ttatagttag catgacgcgg aatgtatccg
     1981 atttgctggt ggtttactta ttggagcgtg aggccggttt gttggttaat agttcagatg
     2041 gtttagcttc taaggttcat gtggtcccgc tctttgaaac aattgaggat ttagttcata
     2101 gcccacagat tctggacgaa ttcctttcgc acccggtaac aaaaaacagc ctgaaatggc
     2161 aacaacagcg cgatggttct gcaactatgc ttcagcaagt tatgatcgga tacagcgata
     2221 gcaataaaga tggtggtatt tttgcaagcc aatggtattt gtacgaagcg caatccaaaa
     2281 tgattgaaat tgggcgtaaa cacaatgttc aaatcagctt ttttcatgga aaaggtgggt
     2341 ctatcagtcg tggtgccggg cctacacatt ggtttcttaa agcgctgccg cccggctccg
     2401 tcgatggaaa tatgcgcctg accgaacagg gtgaaaccat tgaacgaaaa tatgcaaaca
     2461 attacaatgc agtttataat atcgaattgt tgaccgccgg aacactctcg gctacattgt
     2521 tgcacaaaaa caaagaagtg gccgaacatc aacttgtttc ggaattgaat tatttggcta
     2581 acaaaagcat ggtcgagtac aaaaagctta cacagttgcc tggttttatc cggttctacg
     2641 aaaaagcaac acctatcgat gctattgagc agagtaaaat tggcagccgt ccgtcccgtc
     2701 gaaccggaac acgcagttta tccgacctga gagcgattcc gtgggttttt agctggagcc
     2761 agtgccggtt taatattacc agttggtatg gggtaggcac tacgttggaa gaaatgtatg
     2821 aaaaagagcc tgccaaattt gaaaagctga gaaaatcagc agaaactgat ccgtttatca
     2881 ggtatgtgct gaccaatatt gattcaagcc ttgcagcgtc cgatgagact attttcaaac
     2941 aatatgcaag ccttgcagcc gatgtacccg aaagtccagg ctttataaag ctcatgaccg
     3001 acgagctgat ccggacaaga cgaatgatag atgttttgct ggatattcct ctggaaaaaa
     3061 gacggaaaaa tcattattac tcaacgcttt tgcgttcgga agctatggat gcattacata
     3121 tgcatcaggt gtctttgctt gataaatgga gaacatgtac tgccatggga aaaactacag
     3181 aagcagatca tgtactgatt gaactcctga gctgtatcaa tgctatagct ggtgccgttg
     3241 ggtttaccgg ataaaataac gtattaacag aaaaaacgct ccaaagatat ttggagcgtt
     3301 tttttgttat tttaatacaa ccgttattta gcctgtaaat ccaacagcac cggctatggc
     3361 attgatacag ctcaacagtt caatcagtac atgatct
//
LOCUS       DATDNM010000858         2346 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_100191, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000858 DATDNM010000000
VERSION     DATDNM010000858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100191"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1675)
                     /locus_tag="VI413_14315"
     CDS             complement(<1..1675)
                     /locus_tag="VI413_14315"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY6915848.1"
                     /translation="MRKIIYFLFAITILWAGTSMAQKKAFAIEDLYKIHSVGAPVISP
                     DGMHLAFTVTDYDQPKGKSLTDIYVMDLDGSNKKQITNDGKGNSNPLWTSDSKCLYYV
                     SSASGTSQVYLYTFANNQSKKITGFSMGVSSPVLSPDNKLIAFSSEIYPECGADSKKN
                     TLTDSLATNGPVQAYVADQLLFRHWTDYAAGKASHIILYNIETQTYTDLTPDKFVSPI
                     FMLGGGIGYNFSPDSKELCYVSNHDVHPDSSTNADLFVVPVTGGEAHNITPENKAWDG
                     SPTYSPDGKYIAYRKQLVPGYESDLFRLALYNRQTKETKMISESFDNWVNDYKWNVDS
                     KSIYFLGEVQGHQPLYKIDIASQKITPVSGEKSIFGFDFDTKGYAYYSANSVGKPTEL
                     YSMKLTDKKVTQLTTLNQEFENTVDIRPADTMWVAGADGKKVEVFIVKPHNFEPNKKY
                     PLVLNVHGGPQSQWLNSFRGDWQVYPGAGYVLVFPNPHGSTGYGQDYTREISGDWGGK
                     PFTDLMKVTDALANLSYVDSTRMGAMGWSYGGYMMNWFQAKTKRFKCLAS"
     gene            complement(2001..>2346)
                     /locus_tag="VI413_14320"
     CDS             complement(2001..>2346)
                     /locus_tag="VI413_14320"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915849.1"
                     /translation="LTTIYNFFNQYLTPPSVTTGINTSTQNVDMPLVLSPNPATSSIH
                     LIFSQSNTGKVQIELCNQSGMLVYKTEKQYDHIGLQNETIYLDKLNLPQGIYFVKISI
                     NGMQGINKFLKK"
BASE COUNT          663 a          452 c          495 g          736 t
ORIGIN      
        1 tggatgccag gcatttaaaa cgcttagttt tcgcctgaaa ccagttcatc atatatccac
       61 catacgacca acccatggcc cccatacgtg ttgaatcgac atatgacagg ttagccagtg
      121 catcagtcac tttcattaag tcggtaaacg gtttgccgcc ccagtcgcca gaaatttcac
      181 gcgtataatc ctgtccatat cctgtagaac catgtggatt tggaaaaacg agcacataac
      241 ctgcacccgg ataaacctgc cagtcgccac ggaatgaatt caaccactgg ctttgtggtc
      301 cgccatgtac attgagcaca agcggatact ttttattcgg ttcgaaattg tgtggtttaa
      361 caatgaatac ttccactttt ttgccgtcgg cacccgcaac ccacatggtg tcggccggac
      421 gaatatcaac tgtattttca aattcctgat tcagggtagt tagttgtgtt acttttttat
      481 cagtcaactt catactgtat agttcagtcg gttttcctac cgaatttgcc gagtaatatg
      541 catatccttt tgtatcaaaa tcaaatccga aaattgattt ttcgccgctg acgggagtta
      601 tcttttggga agctatatca attttgtaaa gaggttgatg tccctgcact tcacccagaa
      661 aataaataga tttagaatct acattccatt tatagtcatt cacccagttg tcaaatgact
      721 cggaaatcat cttcgtttct ttggtctggc gattgtataa agccaaacga aacaaatcgg
      781 attcatatcc gggaaccagt tgcttgcggt aagcaatgta ttttccgtct ggagaataag
      841 ttggtgaacc atcccaggct ttgttttccg gggtaatatt atgtgcttca cctccggtaa
      901 caggcactac gaaaaggtcg gcattggttg atgaatcggg atgaacatcg tggtttgata
      961 cgtagcaaag ctctttacta tccggcgaaa agttatatcc tatacctcca cccaacataa
     1021 aaatgggtga aacgaattta tcaggagtca ggtcggtata agtttgtgtt tcgatattgt
     1081 acaggatgat atgtgaggct ttgccagcag cataatctgt ccagtgacgg aataaaagtt
     1141 gatcagctac gtatgcctga accgggccgt ttgttgccag tgaatcggtc agggtatttt
     1201 tcttgctatc agcaccgcat tcgggatata tttcagacga aaaagcaatc agtttattgt
     1261 ctggcgataa aacaggactg cttacaccca tggaaaaacc ggtgattttc ttcgattgat
     1321 tgttggcaaa tgtatagagg taaacttgtg atgtacctga tgcagatgag acgtagtaaa
     1381 gacatttgct atcgctggtc caaagcggat tgctgttgcc cttgccgtcg ttagtaattt
     1441 gttttttatt gcttccgtct aaatccatga cgtaaatatc tgttagcgat tttcctttcg
     1501 gctggtcata atctgtaaca gtaaatgcca gatgcattcc gtcgggcgaa ataacaggag
     1561 cacctacaga atggattttg tataaatcct caatggcaaa agcctttttt tgagccatgg
     1621 aagtgcctgc ccataagatc gtaatggcga ataagaagta aataattttt ctcatttgaa
     1681 tatattttga tttgcgaaat aaaacctgat ttggtttaaa attggaatac ttatgcaaaa
     1741 gtaataatct ttttttaaag aaaagcctga gaatgacttt ttgcagagaa agggtctgta
     1801 tggaactgat aaatttattc gtggaaagat aaaaatgagc aaaaaccaga acttcatttc
     1861 tggctttgaa ctgttactcc aaaaattatg cttatgactt aaaaacagct cttgagcatg
     1921 actttggtaa atcatgccca agacttcgga aattctttaa aggcaggtat atggggtgta
     1981 gtgcgaataa caaataagtt tcattttttt aaaaacttat taatcccctg cattccgttg
     2041 atgcttattt ttacgaaata gataccctgc gggaggttta gcttgtcaag gtatattgtt
     2101 tcattttgga gcccgatatg atcatattgt ttctccgttt tgtataccag cattccggac
     2161 tggttgcata attcaatttg cactttgccg gtattgctct ggctgaatat caggtgtatt
     2221 gaactggtgg caggattggg agatagcaca agcggcatat caacattctg cgtcgacgta
     2281 tttattcctg ttgttacact tggtggagtc aggtactgat taaagaaatt gtaaatagta
     2341 gttagc
//
LOCUS       DATDNM010000859         2788 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1702633, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000859 DATDNM010000000
VERSION     DATDNM010000859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2788
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1702633"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1530)
                     /locus_tag="VI413_14325"
     CDS             complement(<1..1530)
                     /locus_tag="VI413_14325"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: protein motif:HMM:NF013259.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HEY6915850.1"
                     /translation="MYKLPTTLTEDIAYFGTLIDDFKEGKTEPVKFKGNRVPMGIYEQ
                     RKDGTYMVRVRTTGGFITPNQLKQVALTAQSHNASLLHITTRQEIQIHHIQIEQAKTI
                     LPELQTVELSSKGGGGNTVRNILVDINSGISANETFDVLPYAIDLTTKLIAEADSFTL
                     PRKLKIAFSTSEANADFAVINDLGFIARMKDGKRGFKVYLGGSVASNPTLGWELFDFA
                     PEEELFNIAVAAKRFFNNHGNRKNKHKARIRYIFYKEGSEKTKELFFNYYNEIKANEN
                     FVYSPETLDFEYKTPSFEAIKLSSEEFLTWKKRNVTVQKQDGLFATIIPFVNGNTDSE
                     TLLKIAAFAAEFGNDVLRFTVRQQLQLRNIPENYLGNLYQLLYELNITTNLPGIINNI
                     VSCTGADTCRLGICYSKGASLALRKKLAKSTLNLDEVSNLQINISGCPNSCAQQIWSD
                     LGFSGRVGRNERMYAAYNVYAGASKSENPQLGVVLGSVSARDLPQFTEDILADYIPVK
                     SS"
     gene            complement(1940..2734)
                     /locus_tag="VI413_14330"
     CDS             complement(1940..2734)
                     /locus_tag="VI413_14330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEY6915851.1"
                     /translation="MNNDINKEEGLGLKKSYLKVSDLNLYIHKAHILKNVNLEIPDKK
                     ITCIIGPSGCGKSTLLKTFNRLIDDTEGVRYEGSIWVDDTDIFDKKTEITDIRKKMGL
                     LSQRPCPLPMSIYDNIAFGCKMHGERNRKKLNQIVEEQLKAVGLWAEVKDRLHAPASK
                     LSIGQQQRLCLARGLAVEPEFILADEATSALDPISSKNIEELFVELKKDYSIILVTHT
                     LRQALRIADHVIFMYLGEVIEAGPADEIFNNPKQELTRKYLEGAFS"
BASE COUNT          765 a          568 c          579 g          876 t
ORIGIN      
        1 tgaagatttc accggaatat aatcggctaa aatatcttcg gtaaattgag gcagatcgcg
       61 cgcgctcacc gatcctaaaa caacacccaa ctgcgggttt tccgattttg aagctcctgc
      121 atacacattg taagcggcat acatacgttc gttgcggcca actcgtcctg agaaacccag
      181 gtccgaccaa atctgctgtg cacatgaatt cgggcaaccg gaaatgttga tttgaaggtt
      241 gctaacttcg tcgagattca acgtgctttt cgcaagtttt tttcgcaggg caagcgaagc
      301 gccttttgag taacaaattc ccaaccggca cgtgtcggct ccggtacacg aaacgatatt
      361 gttgatgatt cccggaagat tggtcgttat gtttaattcg tagagcaact ggtataaatt
      421 acccaaataa ttttccggaa tattgcgcag ctggagctgt tggcggaccg tgaaacgtaa
      481 cacatcattc ccaaattcag cagcaaaagc agcaatttta agcagcgttt cactgtcggt
      541 gtttccattt acaaaaggaa taatagtagc gaaaagtcca tcttgttttt gaaccgtcac
      601 attgcgtttt ttccaggtca ggaactcttc agaagataat tttattgctt caaacgaagg
      661 cgttttgtat tcgaaatcca gcgtttcggg cgaataaacg aagttctcgt ttgctttaat
      721 ttcgttgtaa taattgaaga acaattcttt tgttttttcg gatccttctt tgtagaaaat
      781 gtagcggata cgtgctttgt gcttgttttt gcggttcccg tggttattga aaaaacgctt
      841 ggcagcaaca gcaatattga acaactcttc ttcaggtgca aagtcgaaca attcccaacc
      901 caatgttggg tttgatgcca ccgaaccacc cagatagacc ttgaaaccac gtttcccatc
      961 tttcatgcgg gcaataaaac caaggtcatt aattacagca aaatcggcat tggcttcgct
     1021 tgttgagaac gctattttga gcttgcgggg caaggtaaac gaatcggctt cggcaatcag
     1081 ttttgttgtg aggtcaatcg cataaggcaa tacatcaaat gtttcgttgg cagaaatgcc
     1141 gctgtttata tccaccagaa tattccggac cgtatttcca ccgccccctt tcgacgacag
     1201 ttccaccgtt tgcagttccg gtaaaatggt tttagcctgt tcaatctgaa tgtggtgaat
     1261 ctggatttcc tgacgggtag taatgtgcaa aagtgacgca ttatgacttt gagccgtaag
     1321 cgccacttgc tttaattggt tgggggttat aaatccgccg gttgtgcgca cccgaaccat
     1381 gtaggttcca tctttgcgct gctcgtaaat gcccattggc acacggtttc ctttgaattt
     1441 tacgggttcg gttttccctt ctttgaaatc gtcaatcagt gttccgaagt aagcaatgtc
     1501 ttcggtgaga gttgttggta atttgtacat tattatggac tttatttagg agtcaaaaaa
     1561 ttgagtaatg agaataaatt attctttgca agcaaggcga acaagtctta tcggtcgctt
     1621 ttttattaaa aagtaataga cacataggtt catatagttt tcacatagtg acacatagaa
     1681 gaaattttag atacgcattt gaatagagaa ttaaatttta atttgtattt tcataaatcc
     1741 caaacaatca gaacacatag taaaaatacc ttccggtatt tttgaaagac tggctaactt
     1801 tctacgtgta aacaccgcag gtgtttctat gtaaacttca ataaaaaact atgtgtttct
     1861 atgtgaaagc tatatggacc tatgtgtcta aaatatgaca ttattttatt ttaagtactt
     1921 atgagctatt tgtttcgaat cagctaaacg ctccttccag gtattttctg gtcagttcct
     1981 gttttggatt gttgaaaatt tcgtcggccg gaccggcctc tatcacttcg ccaagataca
     2041 tgaaaattac gtggtcggca atgcgcaaag cctgtcgaag cgtatgcgtt accaaaatga
     2101 ttgaataatc cttttttagc tcaacaaaaa gttcttcgat attcttgctg gaaattgggt
     2161 ccaatgcaga agtggcttca tctgccaata taaattcagg ttccacagcc aggccgcgtg
     2221 ccaggcacaa ccgttgttgc tggccgattg atagttttga agccggagca tgcaggcgat
     2281 ctttcacttc agcccaaagt ccgacagctt tcagttgttc ttccactatc tggttcagtt
     2341 ttttgcgatt gcgctcacca tgcattttgc aaccaaaagc gatattatcg taaatggaca
     2401 taggcagcgg gcaaggacgt tgcgaaagca atcccatttt cttgcggata tcggttattt
     2461 cagttttttt gtcgaaaata tcggtatcgt ctacccatat acttccctcg tatctaacgc
     2521 cttccgtatc atcaatcaag cgattgaatg ttttcagtaa agtagatttt ccgcaacctg
     2581 aaggtccgat tatacaggta atttttttat cagggatttc cagatttaca tttttgagaa
     2641 tatgggcctt atgaatatag aggtttaaat cacttacttt caaataagat tttttaagtc
     2701 cgagaccttc ttccttgttt atatcattat tcaaaaagga ataatcttca gcccaggtgg
     2761 ctcgggaggg attttgataa agatatga
//
LOCUS       DATDNM010000860         2930 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1490504, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000860 DATDNM010000000
VERSION     DATDNM010000860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1490504"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(258..677)
                     /gene="rpsL"
                     /locus_tag="VI413_14335"
     CDS             complement(258..677)
                     /gene="rpsL"
                     /locus_tag="VI413_14335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005853956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEY6915852.1"
                     /translation="MPTIQQLVRKGRAELIDKSKSPALDSCPQRRGVCVRVYTTTPKK
                     PNSAMRKVARVRLTNQKEVNAYIPGEGHNLQEHSIVMVRGGRVKDLPGVRYHVVRGTL
                     DTAGVNGRTQRRSKYGAKRPKPGQPAAKGAPVKGKKK"
     gene            complement(964..1911)
                     /locus_tag="VI413_14340"
     CDS             complement(964..1911)
                     /locus_tag="VI413_14340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014223657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEY6915853.1"
                     /translation="MKKIISLVLLLIVFAFVLEAQTKSDTVCAKGLIHLSNSVGTHCL
                     KPSPTEIDRCLGMNEALQYCTHKTTSSGKWNLVWDDEFDYIGLPDPVKWSFETAGNKT
                     GWGNNEDQHYTDKDSTNAWVSNGVLTITARKVKMGRKKYTSARLNSQGKGDWLYGRFE
                     VRAKLPTGRGTWPAIWMLSTDWAYGGWPESGELDIMENVGFMPDTLVFSAHTKAYNHI
                     MHTQKTKRILYYGTSDAYHVYAMEWEKEQIRFYVDDYLTLTVNNEHKTFAEWPFDRPF
                     HLILNLAIGGFWGGEKGIDNSIFPCRFDIDYVRVYQSDI"
     gene            2192..>2930
                     /locus_tag="VI413_14345"
     CDS             2192..>2930
                     /locus_tag="VI413_14345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915854.1"
                     /translation="MKTKFTFLLTAGIFSMSTIAGYSQFNIGKKIENATRNRANNKVD
                     QSINKGLNAIEEALTKKKTNKSDSTKTANAEKTTGNSNSASNTLSLQSYSKYDFVPGD
                     KVLLFEDFSQDAVGDFPALWTTDVAGEINTLNIAPGNWLNLKSTEGTYWFMKDIDFPK
                     NFILEMDIVPKKEAPRIAADIVLFGESSHSEMDKAGDPGTCGLHVTIEKNIWETKGYK
                     KGTNEKLTGSSTTNLVVPEKVNHVILWV"
BASE COUNT          922 a          606 c          496 g          906 t
ORIGIN      
        1 cattgaaaac gggatcaggt aatacgatcc gtttttttgg tttcgatttt ctcattttac
       61 ttaaaaatgt tcgtttttgt ttttttggtt gcttttagtc ttacttcaac gactcctccg
      121 agccatttac tcaacctttc aactgctacc tgaaaacgca aacaagtgtt taaacttgat
      181 tttgttagtt tctttttgaa aggagattga aacgtgtttc ggcattttca gcttctacac
      241 atgtttcggt gttctactta tttcttttta cctttaactg gtgcaccttt tgctgctggt
      301 tgtcctggtt ttgggcgttt tgctccatat ttcgaacgac gttgcgtacg accattaaca
      361 ccggcggtat ctagtgttcc acgaaccacg tgataacgaa ctcccggaag gtcttttaca
      421 cgaccaccac gtaccattac gatagagtgc tcttgcaagt tgtgtccttc gcccggaatg
      481 taagcattca cttctttttg gttagttaaa cgtacacggg ctactttacg catagctgag
      541 ttcggttttt ttggagtagt agtatacaca cgcacacaca caccgcgacg ttgtggacat
      601 gaatccaacg ctggcgattt gcttttgtca atgagttctg ctcttccttt tctaactaat
      661 tgctgaattg taggcatttt actttgtttt ttgtaactta aatactttat ttatatcctt
      721 ttggttttta tccaaaatgg gttgcaaaga tagacataat attttaatcc acaatacgcc
      781 gcctgcaaat attttaaaat aatcaggatt tcaagctata agcctgttgg aaaggacagt
      841 acatggtact aaaatcaata attgaaagga gataaataca acaaaaaaga gctgaaacta
      901 aaccgaattt tacaagaatt agtttggata acacttagaa cgctgcttca atataaaagc
      961 aaattaaata tccgattgat atacccttac ataatcaata tcgaaccgac atggaaaaat
     1021 actgttgtcg atcccctttt caccacccca aaaacctcca atggccaaat tcaatattaa
     1081 atggaaaggt ctatcaaaag gccattcggc aaaagtctta tgttcattat tcacagtcaa
     1141 cgtcagatag tcgtccacat aaaaccgaat ctgctctttt tcccattcca tagcataaac
     1201 atggtaagca tcggaggttc cgtaataaag aatccgtttc gttttttgcg tatgcattat
     1261 atggttatag gctttggtgt gagccgaaaa aaccagtgta tcgggcataa aaccaacatt
     1321 ttccataata tccagttctc cactctcggg ccatcctcca tatgcccaat cggtagaaag
     1381 catccagata gcaggccagg tacctctgcc tgtgggaagt ttggcccgca cttcgaaacg
     1441 tccatacagc cagtcacctt taccttgcga attgagcctt gccgacgtat attttttcct
     1501 acccattttt actttgcgcg cagtaatagt cagcacacca ttactcaccc atgcattggt
     1561 tgaatccttg tctgtataat gttgatcttc attattaccc caaccggttt tgttacctgc
     1621 cgtttcgaaa ctccatttca ccggatcagg caaaccaata taatcaaact catcatccca
     1681 gactaagttc cacttacctg atgaagttgt tttgtgagta caatattgaa gagcttcatt
     1741 catgccaagg catctatcaa tttcagtcgg acttggtttg agacaatgag taccgactga
     1801 gttcgacaaa tggattaatc ccttcgcaca aacagtatca ctcttagttt gggcttccag
     1861 aacaaaagca aatacaatca acaacaaaac caaactgatt atctttttca taatactaaa
     1921 atttaaaggt tctaacgaaa atcatttatt ttctggtaaa attaaatcaa attcatgtaa
     1981 tcgcaatata aaactacttc acagtttaat aattctgaaa aacactattt aagaaccaac
     2041 atttagccac ttaaattgtt ttaaattagc atattctggg tttctgattt cattagatat
     2101 tatcagtttg acaaactgtt ttttttagtt tcaatttgcg aacaaccaaa cttgttactt
     2161 ctaaataata atacttttaa aattaaaatc tatgaaaaca aaattcacct tcctgcttac
     2221 ggccggcata ttctctatgt ccacaatagc cggttatagc cagttcaaca tcggaaagaa
     2281 aattgaaaat gccacaagaa accgtgctaa caataaagtt gaccaaagta tcaataaagg
     2341 tttaaatgcg attgaagagg cgctaactaa aaagaaaacc aataagtctg acagcacaaa
     2401 aactgccaat gctgaaaaga ctacaggcaa cagtaattcg gcttcaaaca ctctttctct
     2461 tcaatcttat tcaaaatacg attttgtacc cggtgataaa gttttacttt tcgaagattt
     2521 cagccaggat gccgttggtg attttcctgc actttggaca accgatgtgg ccggtgaaat
     2581 aaacacatta aatatagctc ccggaaattg gctcaattta aaaagcaccg aaggaaccta
     2641 ttggtttatg aaagatattg atttccctaa aaatttcatt cttgaaatgg acattgtacc
     2701 taaaaaagaa gcgccacgga ttgcagccga catagtatta tttggcgaaa gcagtcacag
     2761 cgaaatggat aaagccggcg atccgggaac ttgcggatta catgtaacaa ttgaaaaaaa
     2821 catttgggaa accaaaggtt ataaaaaagg gacaaatgaa aagcttaccg gttcatcaac
     2881 aacaaatctc gttgtgcctg aaaaagtaaa ccatgtaatt ctgtgggtac
//
LOCUS       DATDNM010000861         2843 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1595540, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000861 DATDNM010000000
VERSION     DATDNM010000861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2843
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1595540"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..527)
                     /locus_tag="VI413_14350"
     CDS             complement(<1..527)
                     /locus_tag="VI413_14350"
                     /inference="COORDINATES: protein motif:HMM:NF024603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY6915855.1"
                     /translation="MKKNKLLTTLAIIMVVLLAGCKKDDYVETIGVCPLVISTDPANA
                     INSVPYNKVISAKFNEKMDGATINESSFILQQGNTTIEGTVSYSDSTAKFTPSAALLP
                     LTTYKGTIRKTAKDLLGNFLQADYVWTFTTMPQITLISSPVIGGSTVGGGAYAVGAIV
                     TVTATPLPGYAFVNWT"
     gene            complement(820..1005)
                     /locus_tag="VI413_14355"
     CDS             complement(820..1005)
                     /locus_tag="VI413_14355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Thivi_2564 family membrane protein"
                     /protein_id="HEY6915856.1"
                     /translation="MSLLSILLVIIIVGVILWAVNTYIPMDHKIKNILNIVVAIILIV
                     WLLRAFGLFTFLSDVHV"
     gene            1558..2325
                     /locus_tag="VI413_14360"
     CDS             1558..2325
                     /locus_tag="VI413_14360"
                     /inference="COORDINATES: protein motif:HMM:NF040365.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6261 family protein"
                     /protein_id="HEY6915857.1"
                     /translation="MKVKIIRISLKNFRNSEYTIFVSQLVAIFMKYNAELLHLKKSFE
                     RLKAFIPDLEKIKAQELSSAYSTLIHDLDVQRDNLFNAIVNQVKNIEKSGLASLAGHV
                     AVLNRLLDKHGRDIATVNYNAETKRLNDLLAEISSSTEISAAIAATNLNLFVDELRAV
                     NTEFNSKFMQRTEDDAAIEVVDARAIRTESDKELIAFFEAFEFCSSEYDGLDYQTPAN
                     ELNEHISYYKTQLKARDTRRANGKDITSETPIAEKVS"
BASE COUNT          917 a          573 c          536 g          817 t
ORIGIN      
        1 gtccagttaa caaaagcata acccggaagt ggagttgctg ttacggtcac aattgcgccc
       61 actgcataag ctcctccgcc aacggtagat ccgccaatta cgggacttga gattaatgta
      121 atctgaggca tggtggtaaa agtccataca tagtcggctt gcaaaaagtt tccaagtaaa
      181 tctttggctg tctttctgat tgttccttta taggtagtta aaggcaaaag cgccgcagaa
      241 ggtgtaaact tagctgttga atcggaataa gatacagttc cttcaatggt agtatttcct
      301 tgttgcagaa taaaggatga ctcattaatt gtagcaccat ccattttctc gttaaattta
      361 gcagaaatta ccttgttgta aggaacagaa tttattgcat tcgcaggatc tgtagatatt
      421 acgagcgggc atacgcctat agtttcaacg taatcatctt ttttgcaccc cgctaataga
      481 acaaccatta tgattgctaa ggttgtaagt agcttattct ttttcataca ttatgtattt
      541 aattgtgaat gaattttcac attacaaagg tgaggacttt aagaccctaa gcagttacac
      601 aattaaaaga aagacttaca ctattcacac atcctgacat tcgctctttc cttttatcaa
      661 tatatgaggc aaacagtaac atttagtttt acaaatgaaa aagagcattg ccccttaata
      721 caggacaatg ctccggataa atcaggtata gcaataataa ttttcactct tagctaagct
      781 acttattgag ttgaaccacc gcaaccaatc tgtcggactc tacacatgta catccgataa
      841 gaaagtaaaa agcccgaatg ccctgagaag ccaaacgata agaataattg caaccacaat
      901 attcaggata ttcttgattt tgtgatccat gggtatgtat gtattaacag cccacaggat
      961 aacacctaca atgataatta cgagtaaaat acttagtagc gacataataa ttgagtttag
     1021 agggtgaatt aaaagtaaat ctcagaacat taaactatga tgaagtcatg tccggtttcc
     1081 aaagatagat attgcggtta ctccatgcct tacataattt cggattagat ttgcaacatt
     1141 cacacgttga caaatgatta tgaacatttc cgcactgccc tgccctgtta gggcaaaccc
     1201 gccataaaac caatttgcct ttgccctgtt agggcaagca tgcctgaaaa ccagttcgcc
     1261 cttgccctgt tagggcaagc tcgccggaaa atcaatttgc ctttgccctg ttagggcaag
     1321 cacgcctgaa aaatatttcg tccatgccct aacagggcaa gctcgccaga aaaaatattg
     1381 gtgtttgccc taacagggca agctcgtaaa ataatcggga ataacgtccc ctttggggga
     1441 aattatataa aatttaaata atgttaaaca tgagagtggt tttgatgtat cttaaaaaaa
     1501 taatttataa ttttgagtta ataattttcc agtacacaaa aataaatcga ttaccgtatg
     1561 aaagtaaaaa tcattagaat ttcattaaaa aatttccgta acagcgaata cacgatattc
     1621 gtaagtcagt tagtagccat ttttatgaag tacaatgccg aactgctgca tttgaaaaaa
     1681 tcgttcgagc gtctcaaagc atttattccc gatttggaaa aaatcaaagc gcaagagcta
     1741 agcagtgctt acagcaccct cattcacgac ctggatgtgc agcgcgacaa cttgtttaac
     1801 gctattgtca accaggtgaa gaatatcgaa aaatctggat tagcctccct ggcagggcat
     1861 gtagcggtgt tgaaccgttt gcttgacaaa catggacgcg acattgctac agtaaattac
     1921 aatgctgaaa ccaaacgtct caacgactta ttggccgaaa tcagttccag cactgaaata
     1981 tctgctgcca ttgctgccac caatttgaac ctgtttgttg acgaactacg tgcagtaaac
     2041 acggagttta actccaaatt catgcaacgc accgaagatg atgccgctat tgaagtagta
     2101 gacgcacgtg ctatccgcac tgaatcagac aaagagctga tcgctttctt tgaagcattc
     2161 gaattctgca gttccgaata tgatggactc gattatcaaa ctccggctaa tgagttgaac
     2221 gaacatatat cgtattataa aacccaactg aaagcccgcg atacccgtcg tgctaatggc
     2281 aaagatatca ccagcgaaac tccgattgca gaaaaagtat cgtaactatt cggatttttc
     2341 aaactaaacc ctgcattgag aatgttttca atgcagggtt ttttaatata agcacagtac
     2401 gggaattggt ttatattatt caaaacatcc ctaccaggtt ttaaaagtcc gaaggacttt
     2461 aatgtaaata accgcgggtg caacccgtgg tagttaatga tagtagacct gaaccctgaa
     2521 ggggatcaat aatagcaatt tacacattga cccccttcag ggttcgtctt tatattttgt
     2581 gattatccac gggttgcacc cgcggttaat cacattgaat cctttcagga ttccaagaga
     2641 caaatacaga tggttgttag cagtttactt atatcgaact cacgttgatt aaatatcaga
     2701 cactatcttc cggtccggta atacctaccc ggttttaaaa atctggtagg tatgttttga
     2761 ataatatgaa ctaattctcg cacttactta ttgaatcaat gtggggattt tttattatac
     2821 tacacaaaaa aagagcatta ttc
//
LOCUS       DATDNM010000862         2150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_100289, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000862 DATDNM010000000
VERSION     DATDNM010000862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100289"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1207)
                     /locus_tag="VI413_14365"
     CDS             complement(<1..1207)
                     /locus_tag="VI413_14365"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 16 glycosylhydrolase"
                     /protein_id="HEY6915858.1"
                     /translation="MKNSFSQLLSFAVLGGLLCVGCSAQNEPPLEEEVVTSTEVGSGE
                     TNGYTLVWQDLFNGTKLDETNNWVIEVNGDGGGNSELQYYRRENISVGVEPVSGANCL
                     IIKAKKESYSGKTCTSGRLKTAGKMSFKHGKIEARIKLPKTANGLWPAFWMMGADYAT
                     VGWPKCGEMDILEMGNANGINRGTQDKYFSTWFHWGESWNGGSYPNWGKDYTSTTGIQ
                     DDFHLFTLIWDDAALKTYIDLDKNPAATPICEMAINGADVAGNAAHYFHKKFYAIFNL
                     AIGGNFTQIWDINKITALNAANNYESYMYVDYINVYQQGVAGEEYSGPKLTATSKVIA
                     DKAFKMYPNPATDRLIIQATNAIARVTIFDLSGKEILNIRNSNSIDTSTLAKGNYVVK
                     IEDENGKTES"
     gene            complement(1337..>2150)
                     /locus_tag="VI413_14370"
     CDS             complement(1337..>2150)
                     /locus_tag="VI413_14370"
                     /inference="COORDINATES: protein motif:HMM:NF023218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY6915859.1"
                     /translation="GYGDPIVWLDEFFTKVPLSEIDGIAIHCYMGNAGALASYVKRFK
                     KYGKPIWMTEFCAWEKNITNVAAQMNFMSEAVNYLECNADVARYAWFIPRSSGAVESY
                     PYMQLLTKTTPYDLSALGKVFVNMSTLDKTVYYPETQQIPAEHYSSLSMEEAVAAGNW
                     GTPVHLRLTTDVDGVLDVTDLNSDMWLEYLVQTTTITNPKIELRYASLYNANISILVD
                     GTAVATVTLPKTGADNAWATMSTTLPMIIGKHTIRILNTYGGTSLNWIRITK"
BASE COUNT          559 a          507 c          433 g          651 t
ORIGIN      
        1 gcgattctgt tttaccattt tcatcttcaa ttttgactac ataatttcct ttcgccaacg
       61 tggaagtatc aatagaatta ctgttgcgaa tgttcaatat ctctttcccc gacaaatcaa
      121 aaatggtaac ccgggcaatg gcatttgtag cctgtataat caaacggtcg gttgcgggat
      181 tgggatacat tttgaaggcc ttatcagcaa taactttcga cgttgcggtt agttttgggc
      241 cgctgtactc ctcgcctgcc acaccttgct gatacacgtt aatatagtcc acgtacatgt
      301 atgattcata attgttggca gcattcaaag cggtaatttt gttgatatcc cagatttggg
      361 taaaattacc gccaatggcc aggttgaaaa tggcgtaaaa ctttttatgg aaataatgtg
      421 ctgcattacc agccacatcc gccccgttga tggccatctc gcaaataggc gttgccgcag
      481 gatttttatc caggtcgata tacgttttca gggcagcgtc gtcccagata agcgtaaaca
      541 agtggaaatc gtcctgaata ccggtggtgc tggtataatc ctttccccag ttgggataag
      601 aaccaccatt ccagctttcg ccccagtgaa accaggtgct aaaatacttg tcctgcgtgc
      661 cgcggttaat tccatttgca ttacccattt ccagaatgtc catttctccg cattttggcc
      721 acccaaccgt ggcatagtca gctcccatca tccagaaagc cggccaaagc ccattggcag
      781 tttttggtaa ttttatcctc gcttctattt taccatgctt gaatgacatt tttccagccg
      841 ttttcaagcg gcccgacgta caggtcttac cggaatagct ctctttttta gccttaataa
      901 taaggcaatt ggctccactg acaggttcaa cgcctaccga tatgttttcg cgacggtaat
      961 actgtaattc ggagtttcca ccgccgtcgc cattcacttc tatcacccag ttatttgttt
     1021 cgtcgagctt tgtgccgttg aataaatcct gccataccag ggtgtaaccg tttgtttcgc
     1081 cggaaccgac ttctgttgac gtaaccactt cttcttcaag tggcggttca ttctgagcag
     1141 aacaaccgac gcataacaag cctccaagaa ctgcaaaaga aagaagttga gaaaatgagt
     1201 ttttcattga atatgtgagt tatttttgag tttaaaattt ttatacagcc cctaccgggt
     1261 tgcaattcta tctttgtttt ttatcctccg ggatattatc tctaaaaata atttcgttga
     1321 gaaattgtgc tataaactac ttcgttatcc ttatccagtt cagcgatgtt cctccatagg
     1381 tattcagaat acgaatggta tgcttgccaa tgatcatggg taaagttgtg ctcattgttg
     1441 cccaagcatt atctgcaccg gttttaggta acgtaacagt ggcaaccgct gtcccatcaa
     1501 ccaagatact gatattggca ttgtaaagtg atgcatagcg cagttctatt ttcgggtttg
     1561 tgatagtagt tgtctgcacc aggtattcca accacatatc cgagttcaaa tccgttacat
     1621 caagcactcc atccacatcg gtagtaagcc ttaaatgcac cggagtaccc caattgcctg
     1681 cggcaaccgc ttcttccata cttaacgaac tgtaatgttc ggcaggtatt tgttgcgttt
     1741 cggggtaata aaccgtttta tcgagcgtgg acatattcac aaacactttt cctaaagccg
     1801 ataaatcgta aggcgttgtt ttggttagca actgcatata cggatatgat tccacagcac
     1861 cactgctacg tggtataaac caggcgtaac gggcaacatc ggcattgcac tccaggtaat
     1921 ttacagcttc cgacataaaa ttcatttggg cagccacatt ggtaatattc ttttcccagg
     1981 cacaaaattc ggtcatccaa atgggttttc catatttttt aaaacgcttt acgtacgatg
     2041 caagcgctcc tgcattaccc atgtaacagt gaatggctat tccgtcgatt tcggaaagcg
     2101 gaaccttggt gaaaaattca tcgagccaca caataggatc gccataaccg
//
LOCUS       DATDNM010000863         5410 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1381704, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000863 DATDNM010000000
VERSION     DATDNM010000863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 5410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5410
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1381704"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2102
                     /locus_tag="VI413_14375"
     CDS             <1..2102
                     /locus_tag="VI413_14375"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915860.1"
                     /translation="KAQVYINGIAIGTHTGGYDPFTYDITPFLKTTGLQEITVKVYDP
                     TNNAGIPRGKQSLTPGGIMYTPCTGIWQTVWLEPVPQTSIADIKIVPDIDKSLVSINT
                     ATTLDTLNYTVNVEVKDGATTVATFSGNANSDLKIPIQNPKLWSPASPFLYDLKIKLM
                     RGDVVIDSLGSYFGMRKISIKKIGNVQKMMLNNEFLFQFGPLDQGFWPDGVYTAPTDS
                     AMLFDIQKTKDFGYNMIRKHIKVEPYRWYYYADKLGLLVWQDMPSINSYTSSPQPIDK
                     AAFKLELERMVKTHWNSPSIIMWVIFNEEQGQHDTETLVANVMNMDSTRMVNENSGVV
                     YKDVGHVKDVHSYPQPGYPTSTTKVLACGEYGSIGLNIAGHTWGTGVSMIMKNNGDEL
                     LATYKDYAEQLIQFKSENGLSAAVFTQITDVEVEINGLYTYDRAVCKVNEPALREINQ
                     NVINKNLLVNHVLPTSQVTGRTWKYTTSQPLTTWYTAAYNDATWTSAMGGFGSSGTPG
                     GTIRTNWTTADIWMRQTFAVGDLSATDIDKLELYVHHDEGCEIYINGVLAGSFTGYTS
                     TYQLSSVSAAAKSALKVNSSNVIAIHCHQTGGGQYIDAGLLIRSYEDSPKTALINVSA
                     SSNCKVFPNPATNKLSVSRESIQTALIGIYNSLGREVLKPNKFDSQVDISSLKPGMYF
                     LRIETDKSVQNISFIKI"
     gene            2201..4705
                     /locus_tag="VI413_14380"
     CDS             2201..4705
                     /locus_tag="VI413_14380"
                     /inference="COORDINATES: protein motif:HMM:NF014851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding domain-containing protein"
                     /protein_id="HEY6915861.1"
                     /translation="MRKFFKSSLLIAGLCVFIGAIHGQTWSMKRAKIMTAFAATIDTA
                     NVLGEHPRPQMARNQWLNLNGIWQFQPAATLTEALPSGKLSSKILVPFPVESAISGIM
                     THYDKMWYRRTFNVPAAWAGQRVLIHFDAVDYQTEVFINNTSLGIHKGGYDAFTYDIT
                     SYLAANGPQEVTVRVFDPTDAGGQPRGKQTLYPGGIMYTPSSGIWQPVWLEAVPQTAI
                     SDIKMIPNIDNSTLKFKATTSGTATALTVTVDVYDGTTKVTSFTGNANTDLTIPVPSP
                     KLWSPDSPFLYDMKVKLNSGTTAIDSLNSYFGMRKISMGQVGNYKKMMLNNDFLFQFG
                     PLDQGFWPDGLYTPPTDLAIKNDLTKTKQLGFNMIRKHIKVEPYRWYYWADKLGILVW
                     QDMPSPNSYTGTHPDIDTLAYKSELETMVKTHWNSPCIVTWVVFNESQGQHDTQALVS
                     MVRTLDPNRLINQASGGWYYDAGNILDWHSYPPPACPTSSTQILACGEFGGIGLTVAD
                     HIWNNGTTYVMVNNTAELSTMYNSFADMLVQFKTNNGMSAAVYTELTDVETELNGLLT
                     YDRAMVKGSISKFYSINQKVINKNLYLTDVLPTSQVSGKTWKYTTTQPAAEWYTSTFS
                     DAGWQTGNGGFGTAGTPGGTIRTTWNTTDIWMRQTFTMGNVTASQMDSLVLKIHHDED
                     CEVYLNGILASTLTGYTSSYMVYPISDLAKGALIPNGVNTISVHCHQTAGGQYIDAGI
                     ALSSMEKQPVISAIQNPTVENSFKIYPNPAKNILRISRRNPQTELIGVYNVTGNKVMK
                     LNKMDSQVNISSLQPGVYFIKTETDHQVATASFVKK"
     gene            4882..>5410
                     /locus_tag="VI413_14385"
     CDS             4882..>5410
                     /locus_tag="VI413_14385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915862.1"
                     /translation="MKKNKHISGNKTYSFGIGLILMLIIPFWANAGNTNYTSNRSPLI
                     EVPYTPLPIGVVQADGWLLKQLQLQNEGLTGNSEIIYSELGSNSAWLGGNAANSDWER
                     PAYYVKGLVGLAYTLNDAGLKTKAQKWVNWALNSQLASGNFGPTTNTDWWPRMPMLYA
                     IRDFYEATNDARVIPF"
BASE COUNT         1706 a         1200 c         1149 g         1355 t
ORIGIN      
        1 acaaagcgca ggtttacatc aatggcattg ccattggcac acacaccggc ggatacgatc
       61 cgttcacgta cgacattact ccttttttga aaaccaccgg gctgcaggaa attacggtaa
      121 aagtatatga cccaaccaat aatgccggga ttccccgcgg aaaacaatcg ttgacacctg
      181 gtggaattat gtatacaccc tgcaccggaa tatggcaaac agtttggctt gaaccggtac
      241 cgcaaacgtc tattgccgac attaaaatag tacccgacat agataaatcg ctggttagca
      301 taaatactgc cacaacactc gatacgctca actacacggt aaatgtagaa gtaaaagacg
      361 gagcaactac tgtggctaca tttagcggta atgcgaattc agatctgaaa attccaatcc
      421 aaaatcccaa actgtggtcg ccggcatctc catttcttta cgatttgaaa atcaaattaa
      481 tgcggggaga tgtggtcatc gattcactgg gaagctattt cggaatgcgt aaaatttcga
      541 taaaaaagat tggaaatgtt cagaaaatga tgctcaacaa cgagtttctc ttccagttcg
      601 gaccactcga ccagggcttc tggcccgatg gtgtttacac agccccgacg gattcggcta
      661 tgctttttga tattcagaaa acaaaagatt ttggctacaa catgattcgc aagcatataa
      721 aagtggaacc ataccgctgg tattactatg ccgacaaatt aggattgctg gtttggcagg
      781 atatgccttc gataaattcc tacactagtt caccacaacc tatcgacaag gcagcattca
      841 aactggaact ggaacgcatg gtgaaaaccc actggaatag tccgagcatc attatgtggg
      901 ttattttcaa cgaagagcaa ggacaacatg acacagaaac cctggttgcc aacgttatga
      961 atatggactc tacccgcatg gtgaacgaaa acagtggtgt tgtgtataaa gatgttggtc
     1021 atgtgaaaga tgttcacagc tatccgcaac cgggttatcc gacaagcact accaaagtac
     1081 tggcgtgtgg agaatacgga agtatcgggc ttaatattgc agggcatacc tggggaaccg
     1141 gagtgagcat gataatgaaa aataatgggg atgaactttt ggcaacatat aaagattatg
     1201 ccgaacaact gattcaattc aaatcggaga acgggctcag tgctgcagtt ttcactcaga
     1261 ttaccgatgt ggaagtggaa ataaacgggc tctatacgta cgaccgggcg gtttgcaagg
     1321 taaatgagcc tgcgttgcgc gaaatcaatc agaatgtaat caacaaaaat ctgctggtta
     1381 accatgtact tccgacttcg caagtgacag gacgcacctg gaaatataca acttcacagc
     1441 cgctcacaac atggtacacg gctgcctaca acgatgctac atggacatcg gctatgggtg
     1501 gatttggttc gagcggtacg ccgggaggaa ctatacgcac caactggact acagcagata
     1561 tttggatgcg ccagacattt gctgttggcg atttgtcagc cactgatatt gacaaacttg
     1621 aactatatgt acatcatgac gaaggatgcg aaatttatat caatggagtt ttagcgggca
     1681 gtttcactgg ttatacatca acttaccaac tctcgtccgt tagtgcagct gcaaaaagcg
     1741 cattgaaagt gaacagttca aatgtgattg ccattcattg ccatcaaacc ggtggcggac
     1801 aatatattga tgccggtttg ttgattcgca gttacgaaga ttctcctaaa acagccctga
     1861 taaatgtatc tgccagtagt aactgtaaag tatttccaaa tccggcaacc aataaattat
     1921 cggtaagccg tgaaagtatt caaacagcac ttataggcat ctataacagt cttggacgtg
     1981 aagttcttaa gccaaataaa tttgattcgc aagttgatat ttcatcactt aagccgggaa
     2041 tgtatttcct gagaatcgaa accgacaaat ctgttcagaa tatttccttt ataaaaatat
     2101 agcaccatat aatactgcat ccggatattg cattcaataa ggcattatat atttttcata
     2161 acataattga atactacaac aataaatata aatttacaca atgagaaaat ttttcaaatc
     2221 aagtctcttg atcgctggtt tatgcgtatt catcggtgcc attcatgggc agacatggag
     2281 catgaaaaga gcgaaaatta tgactgcatt tgcagcaacc attgacactg caaacgtact
     2341 cggagaacac ccgcgtccgc aaatggcccg caatcaatgg ttgaacctga acggtatctg
     2401 gcagtttcaa ccggctgcaa ccctaaccga agcccttcca agcggaaagc tctccagtaa
     2461 aattctcgta ccattccctg ttgaatctgc gatttcggga atcatgaccc actatgacaa
     2521 gatgtggtat cgccgcacgt tcaacgttcc tgctgcgtgg gccggacaac gggtattaat
     2581 ccacttcgat gctgtggatt atcaaacaga agttttcatc aacaatacaa gcctcggaat
     2641 tcataaaggc ggttacgatg catttacgta tgacataacc tcctatctgg ctgcaaacgg
     2701 tccacaggaa gttaccgtgc gcgttttcga cccaaccgat gcgggtggcc agccacgtgg
     2761 gaaacaaact ttatatcccg gaggtatcat gtacacccct tcatcgggta tctggcaacc
     2821 ggtttggctc gaagctgtac ctcaaactgc aatttcggac ataaaaatga taccgaatat
     2881 cgacaactca acgttgaaat ttaaagctac cacttcagga actgctacag cactgacagt
     2941 aactgtggat gtgtatgatg gaaccacaaa agtgacatca ttcaccggaa acgccaacac
     3001 agatttgacg atcccggtgc caagccctaa attatggtcg cccgattctc cattccttta
     3061 tgatatgaaa gtaaagttga atagcggaac aacagctatt gactcactaa acagctactt
     3121 cggtatgcga aaaatatcaa tgggacaagt gggcaactat aagaaaatga tgctgaacaa
     3181 tgatttcctt ttccagttcg gtccattgga ccagggtttc tggcctgatg gtctttacac
     3241 ccctcctacc gacctggcca tcaaaaacga cctgacaaaa acaaaacaac tgggattcaa
     3301 catgattcgt aaacacatca aggttgaacc ataccgttgg tactattggg ctgacaaact
     3361 gggtattctg gtttggcagg atatgccatc accaaactca tacacaggta cacatccgga
     3421 tattgatacg ttggcttata aatcggaact ggaaactatg gtaaaaacac actggaacag
     3481 tccatgtatt gttacctggg tagtgtttaa cgaaagtcag ggccagcatg acacacaggc
     3541 tttggtttcg atggtaagaa cattagatcc gaaccgcctg atcaatcagg ccagcggcgg
     3601 ttggtattac gatgccggaa atattcttga ctggcatagc tatccacctc ctgcatgccc
     3661 tacaagcagt actcaaatcc tggcttgcgg tgaattcgga ggtattggcc ttacagttgc
     3721 cgaccatatc tggaacaacg gaacaaccta cgtaatggtg aataatacgg ccgaattatc
     3781 taccatgtat aattcatttg cagacatgct ggtgcagttc aaaacaaata acggtatgag
     3841 tgccgctgtt tacaccgaac ttaccgatgt tgaaaccgaa ctgaacggac tgcttaccta
     3901 cgaccgcgcc atggtaaaag gaagtatttc taaattttat agtatcaacc aaaaagtaat
     3961 aaacaaaaac ctttatctga ccgatgtgtt accaacatcg caggtaagtg gcaaaacatg
     4021 gaaatatact accacccaac cggctgccga gtggtacact tcaacattta gtgatgccgg
     4081 ctggcaaaca ggaaacggcg gatttggtac tgcaggtaca cccggcggaa ccatccgtac
     4141 aacatggaac acaactgaca tctggatgcg ccagacgttt actatgggaa atgtaaccgc
     4201 aagccaaatg gatagccttg tattaaaaat tcatcacgat gaagattgtg aggtttatct
     4261 gaatggtatt ttggcaagta ctttaaccgg ttatacctca tcgtacatgg tttacccaat
     4321 cagtgatctg gcaaaaggtg cattaattcc taatggggtg aatactattt ctgttcactg
     4381 ccatcaaact gccggaggcc aatatattga tgccggcatt gccttatcta gcatggaaaa
     4441 acaaccggta atttcagcaa ttcaaaatcc aacggtagaa aacagcttca aaatatatcc
     4501 gaatccggcc aaaaacatac tcagaatttc ccgcagaaac cctcaaacgg aattaattgg
     4561 tgtatataat gttaccggaa acaaagtgat gaaactgaac aaaatggata gccaggttaa
     4621 tatttcatca cttcaacccg gagtgtattt tattaaaact gaaacggacc atcaggtagc
     4681 aacagcatcg tttgtgaaaa aatgatagct aaatagaacc tgattattgc aggtacaaat
     4741 cagcaaaccg gcgtgtaagt atcctgaatc gaagataaaa aggtatttac acgctgtttt
     4801 accttaaaat atttaccatg aaacgaatcc cgttttagca ggacgagttc catacgacct
     4861 ttaaaaatca attattatcg tatgaaaaaa aacaaacaca tctcaggaaa taaaacttat
     4921 tcatttggaa taggattgat tctcatgctc attattccat tttgggcaaa tgcaggaaat
     4981 acaaattata catccaaccg ctcaccgcta attgaggtac cctatacccc gctacccatt
     5041 ggtgtggtgc aggccgatgg ctggttgctg aaacaattgc aacttcaaaa tgaaggactc
     5101 accggcaact cggaaatcat atacagcgag ttgggcagta actccgcatg gcttggaggt
     5161 aatgctgcta attccgattg ggaaagacct gcgtattatg taaagggact tgtagggctc
     5221 gcttacacac tgaacgatgc cggactgaaa acaaaagcgc aaaaatgggt aaactgggct
     5281 ttgaacagcc aattggccag cggaaatttc ggccctacaa ccaatacaga ctggtggcca
     5341 cgcatgccga tgctttacgc tatccgcgat ttttatgaag caaccaacga tgcccgtgtc
     5401 attccattcc
//
LOCUS       DATDNM010000864         3358 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1809405, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000864 DATDNM010000000
VERSION     DATDNM010000864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3358
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1809405"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..540)
                     /locus_tag="VI413_14390"
     CDS             complement(<1..540)
                     /locus_tag="VI413_14390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEY6915863.1"
                     /translation="MADKRKNIVLRFGIVYTIICLSFVAVLYKIVVIQTVERDKWLAL
                     AAHNKKTDIVVKPNRGNIYACDGRLMASSIPAYYVYMDLRVPALHEKDGKLFKENIDS
                     VAIYLSSFFKDRTPKEYNLLLSKAYREGKSELQLIPRRITYSELKLLKTLPLFRLGRN
                     KSGLVTKELFKRVRPFGSLA"
     gene            complement(540..926)
                     /locus_tag="VI413_14395"
     CDS             complement(540..926)
                     /locus_tag="VI413_14395"
                     /inference="COORDINATES: protein motif:HMM:NF039650.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsL-like putative cell division protein"
                     /protein_id="HEY6915864.1"
                     /translation="MPWLKKIAEAIIGSEDLSDIKSSSVRDILNGNILTKRFFQKQYG
                     LILLVAVLAFLYVDNRYYCETQLAKEIELKKKIQDVKYESLTISAELMQISRQSNVLK
                     MINERGVNLIRTSTPPIVIEDSIAEK"
     gene            complement(960..1877)
                     /gene="rsmH"
                     /locus_tag="VI413_14400"
     CDS             complement(960..1877)
                     /gene="rsmH"
                     /locus_tag="VI413_14400"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007216899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEY6915865.1"
                     /translation="MNEPIYHIPALLNETIDGLNIKPDGVYVDVTFGGGGHSREILSR
                     LGKNGKLLGFDQDEDAVKNALDDPRFIFVRSNFRYLTNFLRYHNIEQVDGILADLGVS
                     SHHFDEAERGFSFRFDGALDMRMNTKSPLTAAVLLNAYSEEQLADVFYLYGELHNSRK
                     IARTIVNARGKQPFDRIFPFIEVLKPFFGREKEKKDMARVFQALRIEVNKEMDVLKSL
                     LDQSMQVLKPEGRLVVLTYHSLEDRLVKNFIRSGNFEGKLEKDFYGNVLSPMKAVNNK
                     VIVADEAEVERNPRARSAKLRIAELKVSK"
     gene            complement(1921..2385)
                     /locus_tag="VI413_14405"
     CDS             complement(1921..2385)
                     /locus_tag="VI413_14405"
                     /inference="COORDINATES: protein motif:HMM:NF014439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HEY6915866.1"
                     /translation="MSTFIGKYEAKADVKGRIFIPSAYRKLLPDIDRERVVMRKDAEN
                     ECLIIYPEHIWNEKLEGFKSKLDEWNPTDQLLLMQFVSDAEWLDIDSQGRVLISKKNL
                     LAIGVENAEVLFVGMIDRFAVWSKVGYEQAKMSQGDFAALLKERMMKTISDL"
     gene            2746..>3358
                     /locus_tag="VI413_14410"
     CDS             2746..>3358
                     /locus_tag="VI413_14410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEY6915867.1"
                     /translation="MGYKHAIKLDIAEILRKKAPKAKVPKFIINYLRRIIHEKQFNKL
                     FEDNIGKKNLDFIEASLRMFDVTMSIENKENLPPANGKYIFASNHPLGGLDGLTIGLL
                     LGREYLGKVRLFTNDLLMYVEPLQEMFIPVNKVGVQGKSHAETLQNFFESDDHLITFP
                     AGMCSRKVKGKIMDLDWKKSFISKAIQYQRDVVPLYFEGRNSNF"
BASE COUNT         1086 a          765 c          528 g          979 t
ORIGIN      
        1 tgcaagtgac ccgaaaggtc tcacacgttt gaaaagttct ttggtaacaa gtccgctctt
       61 gtttcgtcct aggcggaaaa gcggaagagt tttaagtaat tttagttcgg agtaggttat
      121 tctgcgggga attaattgca attcactttt tccttcgcga taggccttgc ttaacaacaa
      181 attgtattct ttgggagttc tgtctttaaa aaaactggat aagtaaatgg ctacagaatc
      241 aatgttctct ttaaatagct tgccatcttt ctcatgcaat gcaggcacac gcaagtccat
      301 ataaacataa taagccggaa tggaactagc cattaaacgt ccatcgcagg cataaatatt
      361 ccctctgttt ggttttacaa caatgtccgt ctttttatta tgtgcagcca gtgccaacca
      421 cttatccctt tcaacagtct gaataacaac aattttatac aaaactgcaa caaatgaaag
      481 gcatattatg gtataaacaa taccaaaccg aaggacaata tttttacgtt tgtcagccat
      541 tatttttcag ctatgctatc ttctattaca attggaggag ttgaagtcct tataaggttc
      601 actcctctct catttatcat tttcaatacg ttcgactgac ggcttatctg cataagttct
      661 gccgaaatag tcagcgactc gtattttaca tcctgaattt tctttttgag ctcaatttcc
      721 ttagctaatt gtgtttcaca ataatagcga ttgtcaacat ataaaaaagc taacaccgca
      781 accaacagaa tcaaaccata ctgtttttga aaaaagcgtt tagtaagaat attgccattc
      841 aggatatcac gtaccgaact cgacttaata tctgataaat cttcactgcc aataatggct
      901 tccgctattt tttttaacca gggcatcttt aattttcaat taataaatta tcaattgact
      961 tatttgctga ctttcaattc agctattctc aacttcgcac ttcttgcacg cggattacgt
     1021 tccacttcag cctcatcagc aactatcacc ttgttattca ccgctttcat tggcgaaaga
     1081 acattgccat aaaaatcttt ttcaagcttg ccttcaaaat ttccgcttcg gataaagttt
     1141 tttaccaaac gatcttccaa cgaatgataa gttaaaacga ccaaacggcc ttccggtttc
     1201 aaaacttgca tactttgatc cagcaatgat ttcagcacat ccatttcctt attcacttct
     1261 atccgaagcg cctgaaacac acgggccata tcttttttct ccttttccct gccgaaaaaa
     1321 ggtttcagaa cttctataaa cgggaaaata cgatcgaaag gctgtttgcc gcgggcattt
     1381 acaatcgtcc gggctatttt acgtgaatta tgcaactcgc catacaaata aaacacatcg
     1441 gcaagctgtt cttctgaata agcattaagc aaaaccgcag cagtcaaagg cgatttagta
     1501 ttcatgcgca tatccaacgc gccatcaaaa cggaaagaga atccacgttc cgcctcatcg
     1561 aaatgatggg acgacacacc taaatcagcc agaatcccat ccacttgttc gatattgtgg
     1621 taacgcaaaa aatttgtcaa atagcgaaaa ttgcttctca caaaaataaa acgcggatca
     1681 tcaagtgcat tcttcaccgc atcttcatcc tgatcaaaac ctaacaattt accgttttta
     1741 cctaaccgcg acaaaatctc gcgggaatgt ccgccaccac caaaagtcac atccacatac
     1801 actccgtctg gcttgatatt caagccatcg atagtttcgt taagcagcgc cggaatgtga
     1861 taaatcggtt cgttcatcct atatattttt ctatttcaaa gtcctaattg aagcaactca
     1921 ttataaatcg cttatcgttt tcatcattcg ctctttgagc aatgccgcaa aatcgccctg
     1981 cgacatttta gcctgctcgt agcccacctt gctccataca gcaaaacggt caatcatccc
     2041 aacgaacaac acctcggcgt tttcaacacc aattgccaga agattcttct ttgaaatcaa
     2101 tacgcgcccc tgggaatcaa tatccaacca ttcggcgtca gacacaaact gcatcaacaa
     2161 aagttgatcg gtaggattcc actcatcaag tttcgattta aatccttcca gtttttcatt
     2221 ccagatatgc tcaggataaa taatcaaaca ttcattttca gcatcctttc gcatcacaac
     2281 ccgctctctg tcaatatccg gcaacagttt acggtatgcc gaaggaatga aaatccttcc
     2341 tttcacatcg gctttagctt cgtatttacc aataaatgtt gacataacaa ttcgggttca
     2401 attttacaac tgtaaaagta cagaaataat ttcaaatccc ccactattcc ccacaaaaaa
     2461 atttatcaac agattcacag cctactaaat gtcaatttca acaggttatc aacacatttt
     2521 caacaatttg aacagggatc aaaacatgga tatacaactg attatatgat atttaatatt
     2581 atccgtcaaa aaaattatga acaaaagaat aaaagtgggg gaaagcactt ttatttcatc
     2641 atttaatctg aaacaattta ccataaccga ccaccaatcc cgcagacttt ttgatataca
     2701 agcatttttc gtaaatttgt acgcttacaa caaaaaacag taaatatggg ctataaacac
     2761 gctataaaat tagatatcgc ggagattctc agaaaaaaag cacccaaggc aaaagtaccc
     2821 aaattcatta tcaattacct gcgtcgcatc attcacgaaa aacaattcaa caagttattc
     2881 gaagataata ttggcaagaa aaaccttgat ttcatcgaag ccagccttcg catgttcgat
     2941 gtaacaatga gcatcgaaaa caaagaaaat ttaccacccg ccaacggaaa atatattttc
     3001 gccagcaacc atccccttgg agggcttgac ggtctgacaa tcggtctact gctggggaga
     3061 gaatatcttg gtaaagtcag actttttaca aatgacttac tcatgtatgt tgaacccttg
     3121 caagaaatgt ttattccggt aaataaagta ggcgtacaag gaaaaagtca tgccgaaacc
     3181 cttcaaaact ttttcgagtc cgacgatcat cttatcacat tcccggctgg aatgtgctcc
     3241 cgaaaagtaa aaggaaaaat tatggatctg gactggaaaa agagttttat aagtaaagcc
     3301 attcaatatc aacgggatgt tgtaccgcta tatttcgaag gcagaaattc aaactttt
//
LOCUS       DATDNM010000865         2093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1168704, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000865 DATDNM010000000
VERSION     DATDNM010000865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2093
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168704"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..762
                     /gene="galE"
                     /locus_tag="VI413_14415"
     CDS             <1..762
                     /gene="galE"
                     /locus_tag="VI413_14415"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEY6915868.1"
                     /translation="VEKPLLYYRNNLVSLINLLQLMPIHKVKNIVFSSSCTVYGQPDV
                     LPVTESAPIKAALSPYGNTKQIGEEIIRDTIHANPCYQSIILRYFNPIGAHASAEIGE
                     LPLGVPNNLLPFVTQTAIGIRKQLSVFGSDYNTPDGSCIRDYIHVVDLAKAHVIAVQR
                     MLNEKTKSHVETFNLGTGRGLSVLEIIETFEQVNGVKIPYKIVDRREGDIEKVWADPA
                     YANNELGWTATETVEETLRSAWAWEQNLSKRVKSE"
     gene            895..1875
                     /locus_tag="VI413_14420"
     CDS             895..1875
                     /locus_tag="VI413_14420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004476 - mannose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I phosphomannose isomerase catalytic
                     subunit"
                     /protein_id="HEY6915869.1"
                     /translation="MNKVLYPLKFSPILKDKIWGGTKLKNLFKKSAETDKLGESWELS
                     GYEGDESVVTNGFLAGNNLAELIEIYMGELLGDKIYDQYGLSFPLLFKLIDANENLSI
                     QVHPGDEVAAERHNSYGKTEMWYVVDADQGAELIIGFTKDCTKDEYLDALEAGEVENL
                     LQKVPVTKGDVFFIPAGLVHAIGKGVVVAEIQQSSDITYRIYDYKRTDDHGNERELHT
                     EQALDVINFAASKNPKTAYSAQLNEITPLVECEYFTTNILRFDEAVTRNYGSLDTFVA
                     YMCLEGSLTIESNGEKTTVAKGDTVLVPACIDEIGLIPDGNATLLEVYVA"
BASE COUNT          652 a          361 c          457 g          623 t
ORIGIN      
        1 gttgagaaac cattgttata ttatcggaac aaccttgtgt ctctaattaa tttattgcag
       61 ttaatgccga ttcacaaggt gaaaaacatt gtattttcgt catcatgcac tgtgtacgga
      121 caacccgatg tattgccggt aactgaaagt gcccctatta aagcggcgtt gtcgccttac
      181 ggaaacacaa aacaaatcgg agaggagata atccgtgata ctattcacgc taatccatgc
      241 taccaaagca ttattcttcg ttattttaat cctattggag cacatgcttc ggctgagatt
      301 ggcgaattac cactcggggt gccaaataac ctgttgcctt ttgtaacgca gactgccatt
      361 ggcatccgca aacagctttc ggttttcggc agcgattaca atacgcctga tggctcatgt
      421 atccgcgatt atattcatgt agttgatttg gctaaagcgc acgtaattgc cgttcagcgc
      481 atgttgaatg agaaaaccaa atcgcatgtt gagacattta atctgggaac aggacgcggt
      541 ttatctgtgt tggaaatcat tgaaacattc gaacaagtga atggagtaaa gattccatat
      601 aaaatagttg accgccggga aggtgatatt gagaaagttt gggctgatcc tgcttatgcc
      661 aataatgaac tgggttggac tgcaacagaa acagttgaag aaacgctacg tagtgcgtgg
      721 gcctgggaac aaaatctgtc taagcgtgtg aaatcagaat agttcaccaa tgaaaataat
      781 ttaagaatga acaattaata actctgccac tcagatattt attaattgtt catttttttt
      841 tactccggta attcctgccg gaattataaa ttactaacaa taaacttaaa agagatgaat
      901 aaagtgttat atccattaaa atttagtcct attctgaaag ataaaatctg gggcggaact
      961 aagttgaaaa acctgtttaa aaaatcagcg gaaacagata agttgggtga aagttgggaa
     1021 ctgtctggtt acgaaggtga tgagtcagtg gttacaaatg gttttttagc cggcaacaat
     1081 ctggctgagt tgattgaaat ctatatgggc gaattgctcg gagataaaat ctatgaccag
     1141 tatggtttgt cgtttccgtt gcttttcaaa ctgattgatg cgaacgagaa tctgtctata
     1201 caggtgcatc ctggcgatga agtggcagct gagcgccata attcatatgg aaaaaccgaa
     1261 atgtggtatg ttgtggatgc tgatcaggga gccgagttga ttatcggttt cacaaaggac
     1321 tgcacgaaag atgaatatct ggatgcttta gaagccggag aagtagaaaa tttacttcaa
     1381 aaagtgccgg taacaaaagg agatgtgttc tttatacctg caggattggt gcatgccatt
     1441 ggtaaaggag tagtagtggc cgaaattcaa caaagcagtg atattacgta tcgtatttac
     1501 gattataaac gtactgacga ccatggtaac gaacgcgaac tgcatactga acaagcattg
     1561 gatgtgataa actttgctgc ttcgaaaaac cctaaaacag cttatagtgc gcagctaaat
     1621 gagattactc ctttggtgga atgcgaatat tttacaacca atatattacg ttttgatgaa
     1681 gccgtaacac gtaattacgg ttcattggat acttttgttg cctatatgtg tctcgaagga
     1741 agtttgacaa ttgaaagtaa cggagagaaa acaactgttg ccaaaggtga tacagttctt
     1801 gttccggctt gtattgacga aatcggtttg attcctgatg gtaatgctac cttgctggaa
     1861 gtctacgttg cgtaagaatc cgatcattta taaatagaaa acagcaagtc gatgattcgg
     1921 cttgctgttt ttgtttatta tgaatgttca atcagttttt cagtttaatc tgtatattgt
     1981 ttagtatttt ttcaaatgaa tctaaagtag ctatttcatc tatcataaat gaaacattaa
     2041 aaacagcttc tacttccata atcagacgaa gttgtcccaa gctatcccac tca
//
LOCUS       DATDNM010000866         4736 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1062992, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000866 DATDNM010000000
VERSION     DATDNM010000866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4736
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1062992"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3848)
                     /locus_tag="VI413_14425"
     CDS             complement(<1..3848)
                     /locus_tag="VI413_14425"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY6915870.1"
                     /translation="MTVTNSSTANRLFLGFLFLFCCVFLAARGEQQTISFEAITNDKG
                     LSHNTVYDICQDSQGFMWFATDEGLDRYDGKNIKQYFSRDNNLLPSNSIRSLANTIDK
                     KLFVATSKGLTLYRPYKDDFVEIKNNKHPLGEIISIQEGNPGDLLIATQNQGAFIYKH
                     RQNKFIRLAFLNERVYGLTKDRMGFYWAFTRFSLIRFNSQLKIIGRYMVGPDLFNSAI
                     SYMKSDQKGILWVGTFQAGLFTFNFETATFSPFVPSNKVDMYFIRTIEEGENPNEYWI
                     GTEKGLYILNIQSGHFEHYTQSFDVARKTINDNAVYTIYRNRQNVFFVGTYFGGVNIA
                     KRRRTGFNAIYPNDNSGSLHGKALSNIAQSPTGELWIATEDAGIAIYNLHKRTFTHIL
                     AGENTSSSISTNNVHVLLMDKNICWAGHFLGGLSKIDCKTHTAKRFLGKNGDPASLSN
                     NFVFALHHYSPDTILVGTIAGIDIFDKRTEKFSRFRQEELNDCFVYEIFKAPDGKIWI
                     CTYNKGIFILDKTKRGLMAHYQAGDKSGLPGNSIISYCIDSQKQIWIGTRGSGLCLFS
                     LANQTFKTYTDKNLLINNVVYGILEDKDKNLWISSNKGISRLNIQDNSSIHFNLDHGI
                     AGNQYNYKSYFKTADGYMFFGSVAGLTNFHPDLIRTPDVAPTVHFTNFKIFNETVLPS
                     NKQVLKNNIDFSDKIKLKYNQNSFTLEFTSINYFDGNVSFQYYLEGLENTWSPLTERM
                     QANYTNLSPGKYIFHIRATNKISKQTSEARTIEFIISPPIWASWIAYSLYAIFFLLIA
                     WWLYKSYINRQHEKVALTIEKIEKENLKLLHQHKMNFFTYISHEFKTPLSIIIASVEL
                     LFQKETNNQQDENEEIHHTIKRSATRLLTLVNQLMEFRKIETDHAVIHVHKGDVVDFF
                     HQIVTFYRPLLEKKNIDLKIQIQYETTDIFFDFDKLEKIFTNLLTNAVKYTPDHGEII
                     LQLNVRTNDFYFSVKDSGKGLSPMQIERIFEVFYGEEESKELVESSGIGLALTASLVK
                     LLKGQINVESELGQGSKFIITLPMMENVEGATTYERQISTSDIMEIIPIDYQNEKPID
                     SNREKQFSLVIVEDNKDLLNLLSKKLREKYAVKSFENGLDAWNYIQVKTPDVVITDVM
                     MPVMSGIELCEKIKTNIDLCHIPVVMLTAKTTNEAKMEGLQVGADMYIPKPFSIEELE
                     LRLNNILKVRIALKNKLAELSKIEGFNIPSSNKEQAFIEKVFALIHENIHESDLDVQL
                     LADKLNISRTNLHNRIKNTM"
     gene            4205..>4736
                     /locus_tag="VI413_14430"
     CDS             4205..>4736
                     /locus_tag="VI413_14430"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6915871.1"
                     /translation="MSKNTKFKSKSPLALNLMSIGLFLFFLFQASAVNAQQNSSQTGH
                     HVDGTVTSESGESLIGVSIQVEGSKVGAITDMDGKFSINTPSATATLTFSYLGYISQS
                     VRIAGKSVVNVVLKEDLKQLDEIVVVAYGTQRKKDLTGAVSAVDVNQMKKMQSPNIGQ
                     ALQGQVSGVSVSTSGEP"
BASE COUNT         1331 a          914 c          925 g         1566 t
ORIGIN      
        1 ttcattgtat tcttaattct attgtgcaga ttggttcggc tgatattcaa cttgtcggct
       61 aaaagctgaa cgtccaaatc actttcatga atattttcat ggatcagtgc aaatactttt
      121 tcgataaatg cctgttcttt attggacgaa gggatgttga acccttcaat ttttgacaac
      181 tctgccaatt tattcttgag tgcaattctg accttgagga tgttattcaa ccgaagttcc
      241 agttcttcaa ttgaaaatgg tttggggata tacatatctg cacctacctg caatccttcc
      301 attttggctt cgtttgtggt tttagccgtg agcataacca ccggaatatg gcataaatcg
      361 atatttgttt ttatcttctc gcatagttct atgccactca taacaggcat cataacatcg
      421 gtaataacca catcaggtgt tttaacctga atataattcc aggcatccag cccgttttca
      481 aagcttttca cggcatattt ctcacgaagt tttttgctca gcaggtttaa taaatctttg
      541 ttgtcttcta caatgaccag tgagaattgt ttttcccggt ttgaatcaat cggtttttcg
      601 ttctggtaat cgattggaat tatttccata atgtccgacg tagaaatctg acgttcgtac
      661 gtggtggcgc cttccacatt ttccatcatg gggagtgtaa ttatgaattt gctaccctgg
      721 cctagttcgc tttcaacatt aatctgccct ttcagcaact ttaccagact ggccgtgagt
      781 gcaaggccaa ttccgctgct ttcaaccagc tctttggatt cttcttcgcc ataaaaaact
      841 tcaaaaatac gctcaatctg catgggtgaa agccctttcc cactgtcttt taccgaaaaa
      901 tagaaatcgt tggtacgaac attcagctgg agtattatct cgccatgatc gggtgtatat
      961 ttcactgcat ttgtcagcag attagtaaat atcttttcca gtttatcaaa gtcgaaaaaa
     1021 atgtctgtag tttcgtattg aatctgaatt tttagatcaa tattcttttt ttccagcaac
     1081 ggccggtaaa aagtgacaat ctgatgaaag aaatcaacca catcaccttt atgcacatga
     1141 atcacagcat ggtcggtttc aattttccga aattccatga gttgattaac cagtgtgagc
     1201 aaccgtgtgg cgctccgttt gatggtgtga tgaatctctt cgttttcgtc ttgctgattg
     1261 ttggtttctt tttgaaacag aagctccacg gaggcaatta taatgcttaa tggggttttg
     1321 aattcatgcg aaatgtaagt gaaaaaattc atcttgtgtt gatgcaacaa tttcagattc
     1381 tctttctcaa ttttttcaat agtaagtgct actttttcgt gttggcggtt gatgtaactt
     1441 ttatataacc accaggcaat cagcaaaaag aaaatggcat aaagcgagta agcaatccag
     1501 ctggcccaga tgggtggcga aataataaat tctatcgtgc gtgcttcgct ggtttgttta
     1561 ctgattttgt ttgttgccct aatgtgaaaa atgtatttcc caggcgataa gttggtgtaa
     1621 tttgcctgca tcctttctgt cagtggcgac caggtatttt caaggccttc cagataatat
     1681 tggaatgaga cattgccatc aaagtaattg atgcttgtaa attcaagtgt aaatgagttt
     1741 tggttatatt tcaacttgat tttatcacta aaatcaatgt tatttttcag tacttgtttg
     1801 ttgctgggca aaacagtttc gttgaaaatt ttaaaatttg tgaaatgaac cgtcggagca
     1861 acatcaggag tccggattaa atcgggatga aaatttgtta agcccgctac acttccgaaa
     1921 aacatatacc catcagcagt tttaaaatag gatttgtagt tatattgatt tccggcaatg
     1981 ccatggtcca gattgaaatg aatcgagctg ttatcctgaa tattaagcct gcttattcct
     2041 ttatttgaac ttatccatag atttttatct ttatcttcca gaatgccgta aactacattg
     2101 ttgataagca ggtttttgtc ggtgtatgtt ttaaatgtct gatttgcaag actaaacagg
     2161 caaagtccgc tgcctcgcgt gccaatccat atctgtttct gactgtcaat gcaataactg
     2221 ataatggaat ttcccggtaa gccggattta tctcccgcct gataatgagc cattaatccc
     2281 cgtttcgttt tatctaaaat gaagatgccc ttattgtacg tacaaatcca gatttttcca
     2341 tccggcgctt taaaaatttc gtaaacaaag cagtcattca attcttcctg cctgaaccgg
     2401 ctgaattttt ccgttctttt atcgaaaata tcaattcctg ctatggttcc aaccaaaatg
     2461 gtgtctggag aatagtggtg aagtgcaaaa acaaagttat ttgataaaga cgcgggatcg
     2521 ccatttttcc ccagaaaccg ctttgcagta tgggttttac agtcaatttt agataatccg
     2581 cccaaaaaat gccccgccca gcaaatgttt ttgtccataa gtagcacatg aacattgttg
     2641 gtagaaatag aactggaagt attttcacca gccagtatgt gagtgaatgt tcgtttgtgc
     2701 agattgtaaa tagcaatacc ggcatcctcc gttgcaatcc acaattcacc ggtgggcgat
     2761 tgggctatgt tgctcaatgc tttgccatgc agggatccgc tgttgtcatt cgggtaaata
     2821 gcattaaatc ccgtacggcg tcttttggct atattcacac ctccaaagta ggttccaaca
     2881 aagaatacat tttgccggtt ccgatagatt gtataaacag cgttgtcgtt aattgtcttt
     2941 cgggcaacat caaaagattg ggtgtaatgt tcaaaatgtc cgctttgaat gttaagtatg
     3001 tacagccctt tttctgtacc aatccagtat tcgttcggat tttcgccttc ttcaatggtg
     3061 cggataaaat acatatctac cttgttggac ggcacaaaag gcgagaatgt ggcggtttcg
     3121 aagttgaacg tgaatagtcc agcctggaaa gttcccaccc acaaaatacc tttctggtca
     3181 gacttcatgt acgaaatggc cgaattaaaa agatcggggc caaccatgta ccggccaata
     3241 attttgagtt gagaattgaa ccgaatcagg ctgaatcgcg taaaagccca gtaaaagccc
     3301 attcggtctt tggtaagccc atacacccgt tcgttaagaa aagccaaacg aatgaattta
     3361 ttctgcctgt gcttataaat aaaagccccc tgattttgag ttgcaatgag caaatctccc
     3421 ggatttcctt cttgtatgct gattatttcg ccaagaggat gtttgttgtt ctttatttct
     3481 acaaagtcgt ctttgtatgg acggtagagt gtcagccctt ttgaagtagc tacaaacagt
     3541 ttcttgtcta tcgtattagc aaggcttctt atggagttgg atggcaataa attattatca
     3601 cgcgaaaaat actgtttgat gttttttcca tcgtaccggt caagtccctc gtcggtagca
     3661 aaccacataa acccttgcga gtcctggcag atatcataca cagtattatg cgacagtcct
     3721 ttatcgttgg ttatggcttc gaaagatata gtttgttgtt cgcctcttgc tgctaaaaat
     3781 acacagcaaa acaggaatag aaagcctaaa aacaatcgat tggcagtaga tgaattggtt
     3841 acggtcatat tttatatatg tgcctgaatt aaaattcatt tcaagtaaat aatttaatta
     3901 ttgaaacgct tcaatccgga tttttgttac aaaggaatag atttaattct taaaacttcg
     3961 taaagttaat atcaatttac atgcaatgtt tggattattt ccctgaattt ttgtacaaat
     4021 gtttaatttg ttctgtttca gttattctgc atctgaaata aaacaataat ccaagacttt
     4081 gctgtttttt tctaaaataa ataatttcct ctccttgtat ctttgactcc ggaataaaat
     4141 ggtcgttttc tccatgcggg aattttattt caaaaatcta aattactatt tttttattaa
     4201 tactatgtca aaaaacacaa agttcaaatc gaaatcaccg ttggcattaa atctaatgtc
     4261 aattggtctg tttctcttct ttctttttca ggcaagtgct gttaatgcac agcagaactc
     4321 atcgcaaacg ggacatcatg ttgatggtac ggttacaagc gaatcgggtg agtctttgat
     4381 tggtgtaagt atccaggtag aaggttcaaa agttggtgct attaccgaca tggatggtaa
     4441 gttctccatt aatacgcctt cagcaactgc cacccttact ttctcttatc tcggttacat
     4501 ttcacaatca gttcggattg ccggaaaatc agtagtaaat gttgtgttaa aagaagatct
     4561 taagcaattg gatgaaattg tggtggttgc ttatggaaca caacggaaaa aagatttaac
     4621 cggagcggtt tcggctgtag atgtgaacca aatgaagaaa atgcagtcgc cgaatatcgg
     4681 gcaggccttg caaggtcagg tatcgggtgt atcagtaagc acttccggcg aaccgg
//
LOCUS       DATDNM010000867         2305 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_955877, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000867 DATDNM010000000
VERSION     DATDNM010000867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_955877"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..529)
                     /locus_tag="VI413_14435"
     CDS             complement(<1..529)
                     /locus_tag="VI413_14435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005844013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HEY6915872.1"
                     /translation="MKLSKFKFKLPEEQIAQYPSKHRDESRLMVVHRKTGEIEHRTFK
                     DVLEYFNENDLFIFNDTKVFPARLYGNKEKTGAQIEVFLLRELNHEMRLWDVLVEPAR
                     KIRIGNKLYFGEDDSIVAEVIDNTTSRGRTLRFLFDGTHEEFKKGLYSLGETPLPRNI
                     TREVEPEDAERFQTIF"
     gene            complement(554..1282)
                     /gene="truB"
                     /locus_tag="VI413_14440"
     CDS             complement(554..1282)
                     /gene="truB"
                     /locus_tag="VI413_14440"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEY6915873.1"
                     /translation="MDFIKGEVLYVAKPLHWTSFNLVSKIRWKLQKTLKMKKLKVGHA
                     GTLDPLASGVMIICTGKSTKLIESFQYQTKEYIATLELGATTPSFDLELPVDGTYPTE
                     HITRELVDDVIPRFVGEIWQVPPVYSAVKVDGKRAYDYARDGQEVELKPKLLVIDEIE
                     VLDFSLPVLKIRVVCSKGTYIRALARDIGLALGSGAHLIGLERTRIGEVKLEDCWQID
                     DLIQHLENEIVNSQVLPVEDEIIH"
     gene            complement(1282..2088)
                     /locus_tag="VI413_14445"
     CDS             complement(1282..2088)
                     /locus_tag="VI413_14445"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEY6915874.1"
                     /translation="MTIIQTIILAIVEGLTEFLPISSTGHMALVSAFMGIEKNDFTKL
                     FIESIQFGTILSVIVLYWRKFFDFSRLQLYVKLIIAFIPAAVLGVLFKKHIDQLIGTP
                     LFIACTMFFGGIVLLFVDNWFKNPKIESEEKVSNKNALYIGFFQVLAVVLPGLSRSAA
                     TIIGGMQQKLTRKAAAEFSFFLAVPTLAGAFVKSLWDAYKDTPEILTQQNISILAIGN
                     LVGFVVAILAIKGFISFLTKHGFLFFGYYRIVVGLIIIAMIYFRGNIFIF"
     gene            complement(2091..2285)
                     /locus_tag="VI413_14450"
     CDS             complement(2091..2285)
                     /locus_tag="VI413_14450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005927915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3098 domain-containing protein"
                     /protein_id="HEY6915875.1"
                     /translation="MNLVLIAVGFLIVVLGFILMSGSTTGTEFNPDVFSERRITVAPM
                     VSLFGFVFIVFAILFKPKSK"
BASE COUNT          738 a          521 c          385 g          661 t
ORIGIN      
        1 caaagatagt ctggaaacgt tcggcatctt ccggctctac ctcacgggta atgttgcgtg
       61 gaagcggagt ttcacccaac gaatataatc cttttttgaa ctcttcatgt gtaccatcaa
      121 acaagaaacg tagggtacgt ccacgtgaag ttgtattatc aatcacctca gctacaatcg
      181 aatcatcttc gccaaaatac aacttattac cgatacgaat tttacgtgcc ggctctacca
      241 acacatccca aaggcgcatt tcatggttta attcgcggag gaggaaaact tcaatctgag
      301 ccccggtttt ttctttattt ccatacaaac gtgcaggaaa tacttttgta tcattaaaaa
      361 tgaacaaatc attttcgttg aaatattcaa gtacatcctt gaaagtacga tgttcgattt
      421 cgccggtttt gcgatgcaca accattaaac gcgattcgtc gcgatgctta gacggatatt
      481 gagcaatttg ctcttccggc aacttgaact taaactttga taacttcata ttttattgtt
      541 taattgtttc tttttaatgt ataatttcgt cttcaacagg taatacctga ctgtttacta
      601 tttcgttttc aagatgttga attaaatcat cgatctgcca acaatcttcg agttttactt
      661 cgccaatgcg agtccgttcc agtcctatta aatgcgctcc gctgccaagc gccaagccaa
      721 tatcccgcgc caacgcacga atataagttc ctttactgca tacgaccctg atttttaaaa
      781 ccggaagaga gaaatccaac acttcaatct catctataac caataatttt ggttttagtt
      841 caacttcctg tccatcacgg gcataatcgt acgcacgctt accatcaact tttacagccg
      901 aataaaccgg cggaacctgc caaatttccc ctacaaaacg tggaatcaca tcatccacca
      961 gctctcgggt aatatgttca gtaggatatg ttccatccac cggcaattcc aaatcgaatg
     1021 aaggcgttgt tgcacccaac tccagggttg caatatattc tttagtctga tattgaaaac
     1081 tttcaatgag ctttgtcgac tttccggtgc aaattatcat tactccactt gccaaagggt
     1141 ccagcgttcc ggcatggccc actttcagct tcttcatttt cagtgttttt tgcagtttcc
     1201 agcgaatttt actcaccaga ttaaacgaag tccaatgcaa tggcttcgca acatacaaca
     1261 cttccccttt tataaaatcc atcagaatat aaatatgttt cctctaaaat atatcatcgc
     1321 tatgataatg agcccgacaa cgattcgata ataaccaaag aaaaggaaac cgtgttttgt
     1381 cagaaaagaa ataaatcctt ttatagcaag gatcgcaacc acaaacccca cgagatttcc
     1441 gattgccaga atagaaatgt tttgttgtgt cagtatttcg ggtgtgtctt tataggcatc
     1501 ccacaaactc tttacaaatg caccggccaa tgtaggcact gccaagaaga atgaaaattc
     1561 ggccgcagct ttacgcgtta gcttttgctg cattccacca ataatggttg cggcactacg
     1621 gcttagcccg ggtaaaacca ccgccaaaac ctgaaaaaaa ccgatataca gtgcattttt
     1681 attgcttact ttttcttcgg attcgatctt cggattcttg aaccaattat ccacaaatag
     1741 caaaacgatt ccgccaaaaa acatggtaca ggcaataaac aaaggtgttc caatcaattg
     1801 atcgatatgc tttttaaaca agactcccaa tacggctgca ggaataaaag caataatcag
     1861 tttcacataa agttgtaatc tactaaaatc aaaaaatttc cgccaataaa gtacaattac
     1921 tgaaaggatg gttccgaatt gaatactctc aataaacaat tttgtaaaat cgtttttctc
     1981 aatacccata aaagctgaaa ccaaagccat atgccctgtt gaagaaatag gtaaaaattc
     2041 tgtcaatcct tctacaattg ctaaaataat ggtttgaata atggtcatgc ttatttactc
     2101 ttcggtttaa acaaaatggc aaaaacaata aatacaaaac caaaaagcga aaccatagga
     2161 gctacagtaa tacgacgttc gctgaaaaca tccggattga attcggttcc ggtggttgag
     2221 ccggacatta aaataaagcc caaaacaaca atgagaaatc ctacagcaat caataccaga
     2281 ttgattttgc caagagtaaa gcgag
//
LOCUS       DATDNM010000868         2458 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1491431, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000868 DATDNM010000000
VERSION     DATDNM010000868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1491431"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1666)
                     /locus_tag="VI413_14455"
     CDS             complement(<1..1666)
                     /locus_tag="VI413_14455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915876.1"
                     /translation="MKSLRYKGNRVISLILVASFLFVLPSCDKRLKPLKIDPAFAAYV
                     ISFTSGVVSNSTKVQVRLVNEVPEAVPGKALPFNPFSFSPGIDGEVKWIDKQTIEFTP
                     EKPLPSGEIYTVDFDLDKFVKVPDNLKTLTFRFQVKHQGIKYEFNGITPVNVAEKKWQ
                     QVHGIFYTADVVDAATFESLVKASNDGNEYSLSWKHSVDGTVHEFSIDSVERRNVHTN
                     IKIAWEGTRIGAKEDGSEIFEMPTLDEFKVIHVKTETNPKTSIELFFSDPLSKIQDIT
                     GLFKLDPSAGENVIINGNVASIIPQRTITGNVRVTAFAGLKNIFEKPLGSDFITVVQF
                     VSLKPQVELIGDGVIVPNTDGILFPFRSVSLSGVDVRIIQIYENNIVQFLQANQLNGN
                     QEIKRVGRVVYNQEVALTSDNPIDYNVWNNFSLDLAKLIEPEPGAIYRVEISFRKKHS
                     LYPCTGGKKIESYVEPEDPNESYNEPPADSYWSYYEDEGEYYSEGYNWQEKDDPSKDS
                     YYMLGAHKVARNVLASDYGIIAKAGSNNEYFVAVTDLRTTDPLKGID"
     gene            1969..>2458
                     /locus_tag="VI413_14460"
     CDS             1969..>2458
                     /locus_tag="VI413_14460"
                     /inference="COORDINATES: protein motif:HMM:NF044358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915877.1"
                     /translation="MRKLITLLLLSIFLHAAGIAQQVSRVEGSPFPGTVKPDTLYYTS
                     NSMAESEIFATGSLSGILAKKKPMILQWQYFHQEIVRESGQGYKIFDTYSNDFTGLLR
                     FFAKRLNGYILCDPKSASSNVAASLSGILNAVAIPTDIEGKAKLAGLTKILDVTGKDE
                     LWA"
BASE COUNT          690 a          559 c          480 g          729 t
ORIGIN      
        1 tatcgatgcc tttgagcggg tcggtggtac gcaagtcagt taccgcaaca aaatattcgt
       61 tgttacttcc tgccttggca ataatcccat aatcggacgc caacacgttt cgcgccactt
      121 tatgggctcc gagcatgtaa tacgaatcct tggaaggatc gtctttttcc tgccagttat
      181 aaccttcgct gtaatattct ccttcatcct cataataact ccaataagaa tcagccggcg
      241 gttcgttgta actttcgttg gggtcttcgg gttctacgta cgattcaatt ttttttccgc
      301 ccgtgcacgg ataaagcgag tgttttttgc ggaaagatat ttctacccga taaatggctc
      361 cgggctcggg ttcaatgagt tttgccaaat ccagcgagaa attattccac acattataat
      421 caatcggatt gtcggatgtc agcgctactt cctgattgta cacaacacgc cctacccgct
      481 taatttcctg gttgccgttg agttgattag cctgcaaaaa ctgaactata ttattctcat
      541 aaatctgaat aatcctcaca tccaccccgg aaaggctcac acttctgaat ggaaataaaa
      601 tgccatccgt attgggaacg ataacaccat cgccaatgag ttccacctgc ggtttcaggc
      661 tcacaaactg aaccacggta ataaaatcac ttccaagcgg tttttcaaat atatttttca
      721 ggccggcaaa tgcagttact cttacattgc ccgtaatggt ccgttgagga ataatgcttg
      781 ccacattccc gtttataatt acgttttctc cggcagatgg atccagttta aacaaaccgg
      841 tgatatcctg tattttgctc aatgggtctg agaaaaacag ttcgatagac gttttcggat
      901 tggtttctgt ctttacgtga atcaccttga attcgtccag tgttggcatt tcaaaaatct
      961 ccgaaccatc ctcctttgct cctattctgg tgccttccca tgctattttt atgttcgtat
     1021 gcacatttct ccgttccacg ctgtcaatgg aaaattcatg taccgtgcca tctacgctgt
     1081 gtttccaact caaggagtat tcatttccgt cgttcgaagc tttcaccagg ctttcaaacg
     1141 tagcagcatc aacaacatcg gccgtataaa aaataccatg cacctgttgc catttctttt
     1201 ctgccacatt tacaggagtg ataccgttga attcatattt gatcccctga tgctttacct
     1261 gaaagcggaa tgtcagcgtt ttcaggttat ccggaacttt cacgaactta tccaaatcaa
     1321 aatcaaccgt gtaaatttca cccgatggca atggtttttc aggcgtaaac tcaatcgttt
     1381 gtttgtctat ccatttcact tcgccatcta ttccgggact aaacgagaaa ggattgaaag
     1441 gcaaagcttt tcccggcaca gcttcgggca cttcattcac caaccgcacc tgtactttgg
     1501 tagagttaga aactacaccc gacgtaaatg aaataacgta ggctgcaaag gctgggtcaa
     1561 ttttcagggg tttcagcctt ttatcgcacg acggcaacac aaaaagaaac gaagcaacaa
     1621 gaatcaggga aataacacga tttcccttgt aacgaagtga tttcatagga acgtgaaaag
     1681 aagtggttga tagaaaattt aattaaaatg caaatgtaat tggtttttta gaattcctgc
     1741 attttttccg gggtttttct taattggata taaaaaagcg tgtacatgaa gtgtaaccaa
     1801 cttagaaatt ggcgtttcca aaattgtatt tatctgagat atggtccgaa tttaatgttt
     1861 tttgagcagg aattctcaat ccattcattt tattgtatgt acttttacaa aaacaaaatg
     1921 caaagtatca agcaaataaa taaaccctat tcaattaaga ttaatctaat gcgcaaactt
     1981 attactttat tgcttttaag catctttcta catgctgccg gtattgccca acaagtgtca
     2041 cgggtcgaag gaagtccgtt ccccggtacc gtaaagcctg acacactcta ctacaccagc
     2101 aattccatgg cagagtcgga aatctttgca accggatcgc ttagtggaat tctggctaag
     2161 aaaaaaccga tgatccttca atggcaatac ttccaccagg aaatagtgcg ggaatcgggc
     2221 caggggtata agatatttga tacctacagc aatgatttca caggactact cagatttttt
     2281 gccaaacggc tgaacggtta catcttatgt gacccaaaaa gtgcaagttc caatgtggct
     2341 gcgtccttgt ccggcattct gaatgccgta gccattccta ccgatatcga gggaaaagcc
     2401 aagcttgccg gattgactaa aattctggat gtgaccggca aagacgaatt atgggcac
//
LOCUS       DATDNM010000869         2638 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_101130, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000869 DATDNM010000000
VERSION     DATDNM010000869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2638
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101130"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1962)
                     /locus_tag="VI413_14465"
     CDS             complement(<1..1962)
                     /locus_tag="VI413_14465"
                     /inference="COORDINATES: protein motif:HMM:NF021619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6915878.1"
                     /translation="MIPENSLLTSFYKDIQFSDIFDLDEVQRMQDLFSEATGVASMIT
                     NPDGIPLTRPSNFCRFCRMVRDTEKGSARCIESDRTLGVNDPVSSAMVLRSCLNVGLW
                     DSGASLIVEGKLLANWLIGQVRNEPMNESQIRNFANEIGVDDNELINAFYEIPVMQAH
                     KFEKITEMLFVFVNELTQKAYSNLQLKIEIEERKKANALLLKSEEKYRTIFETIHDVF
                     YQIDLNGIITEISPSISLYTSFEREAIIGRSVSEFYVSSVDREIFLQEVKTKKEIRDY
                     ELDINAGDVGILNVSINARLVHNSEGNPVCVEGVLRDVTKRKNAEKALRESELKFRNY
                     IDFAPHAVFVANETGKYIDANPAALRMLGYTMEELFLINPAELVSADSREQFSKHFEI
                     AKGTGYASDEITVVRKDKEAKKVVVDTVRLSEQCYLGFVVDITDRKTAEEVLKESEMH
                     LTEVQNIAHLGNVSIDVVTRNWKSSEVLNRIFGITEHYDFSYAGWKKIIHPDSEREIL
                     DYLSANIIHESNLFDKKFRIIRQSDREIRWVHVIGKLKFDTYNQPVKLIATIQDITER
                     QQSTEALRQSEALYRTTLNASPDTIVIVEMDGSIRMVSPSGLILFGYDDESMVIGHNM
                     FEYIESEDVERAQSNTMLMYQGYLGTIQYQ"
     gene            complement(2070..>2638)
                     /locus_tag="VI413_14470"
     CDS             complement(2070..>2638)
                     /locus_tag="VI413_14470"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEY6915879.1"
                     /translation="AVKIDMGMLKLNVLKDIDKKRSEELHIKFDNLSVLIDNTIKTAR
                     KIMTDLRPEVLDMIGFVETVRQHLNSFKERHKVSCNLVTSDSHLELSTQQSVALFRII
                     QEALNNIAKHAKATEVNVIVNKRDKKLILEIEDNGVGFEQNQKKNHDSYGLIGMKERV
                     FLLDGELSIKSKVGKGTTVQVIVPFDGK"
BASE COUNT          765 a          629 c          390 g          854 t
ORIGIN      
        1 ctggtactgg atagtaccca aataaccctg atacatcaac atagtattgg actgtgcccg
       61 ctccacatct tcagattcaa tatattcaaa catattgtga ccaataacca tactttcgtc
      121 atcgtagcca aagagtatca accccgatgg tgaaaccatg cgaatactcc catccatttc
      181 aacaattaca atcgtatcag gagacgcatt aagtgttgtc cggtataatg cttcactttg
      241 acgaagcgct tcagtcgact gttgcctttc ggtaatatcc tgtatagttg caattaattt
      301 aactggctga ttataagtat caaacttaag ttttccgatt acatgcaccc atctaatttc
      361 tctgtcactt tgacgtatta ttctgaattt tttatcgaaa agattacttt catgaataat
      421 atttgctgaa agataatcta aaatttcccg ttccgaatca ggatgaatta tcttcttcca
      481 ccctgcatac gaaaagtcat aatgctcagt gataccaaaa attcgattca acacttcaga
      541 actcttccag tttctggtga caacatctat cgaaacgtta cctaagtgag caatattctg
      601 cacttcagtc aaatgcattt cgctttcttt caatacctct tcggcagttt tacggtctgt
      661 aatatcaacc acaaagccaa ggtaacactg ctccgacaac cttacggtat caacaacaac
      721 ttttttagcc tctttgtctt ttcgtactac agttatttca tcacttgcat acccggtgcc
      781 ttttgctatt tcgaaatgct tggaaaactg ttctcgcgaa tcggccgaaa caagttctgc
      841 cgggttaatc aggaataatt cctccattgt ataaccgagc atcctcaatg ctgccggatt
      901 tgcatcaatg tacttccctg tttcattggc aacaaaaaca gcatgcggag caaaatctat
      961 gtaattccta aatttcaact cactttcccg aagtgctttt tcagcattct tcctttttgt
     1021 cacatcccga agcactcctt caacgcaaac aggatttccc tccgaattat gcactaaccg
     1081 ggcattaatc gacacattta gaataccaac atcacccgcg ttaatatcta attcgtaatc
     1141 tcttatttct ttctttgttt tgacttcctg taaaaaaatt tcccgatcaa ctgagcttac
     1201 ataaaactcc gaaaccgatc tcccaataat tgcttctctc tcaaaggaag tatataaact
     1261 gattgatgga ctaatttctg ttataatgcc gttcaaatca atttgataga aaacatcgtg
     1321 aatagtttca aaaatagtcc ggtatttctc ttcactcttg agcaacaaag catttgcttt
     1381 tttacgctct tctatttcaa tttttagctg aagattgcta tacgcttttt gagtgagttc
     1441 gttcacaaat acaaataaca tctcagttat tttctcaaat ttatgagcct gcattaccgg
     1501 tatttcatag aacgcattga ttagttcatt atcatcaact cctatttcgt tggcaaagtt
     1561 ccgtatttgg ctttcattca tgggttcatt ccgaacctgt ccaatcagcc agttggcaag
     1621 tagtttccct tcaacgatta aactggctcc tgaatcccac aggccgacat taaggcatga
     1681 ccgcaaaacc attgcactgg aaacaggatc attcacccct aatgttcgat cagattctat
     1741 gcacctggcc gacccttttt ctgtgtccct aaccatgcgg caaaagcggc aaaagttgct
     1801 tggtctggtc agcggaattc catccggatt tgtaatcatc gaagctacac ctgtggcttc
     1861 ggaaaataaa tcctgcatcc gttgcacctc gtcgagatca aaaatgtcgc taaattgaat
     1921 gtctttgtag aaacttgtca ataaactatt ttcaggaatc attttgtcat tggtaaatat
     1981 ttaaaaaact ggatgatttg caatcagccg tcaggcaacc gttgcaatca ctctcaatac
     2041 tctactcact ttcacaaagc ctacactttt tatttaccat cgaaaggtac aattacctga
     2101 accgttgtcc ctttgcctac tttacttttt atcgacaatt caccatcgag cagaaaaact
     2161 ctctctttca taccgatcaa tccatacgaa tcatgatttt tcttttgatt ctgctcaaaa
     2221 cccacaccat tatcttcaat ttcaagtatc agtttcttgt cacgtttatt cacaattaca
     2281 ttcacttcag tggctttggc atgtttggca atattattta acgcctcctg aatgatacgg
     2341 aacaaggcca ccgattgctg agttgacaat tccaaatgcg aatcacttgt tactaaatta
     2401 cacgacactt tatgcctttc cttgaaactg ttcaaatgtt gccggactgt ttcaacaaag
     2461 ccaatcatat caagcacttc cggacgcaaa tcggtcataa tcttccgggc agttttaatc
     2521 gtattatcaa tcagtaccga tagattatca aacttaatat gcaactcctc cgaacgtttt
     2581 ttatcaatat ctttcaacac attcaacttc aacataccca tatcaatttt aactgcta
//
LOCUS       DATDNM010000870         2827 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1810065, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000870 DATDNM010000000
VERSION     DATDNM010000870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1810065"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1494)
                     /locus_tag="VI413_14475"
     CDS             complement(<1..1494)
                     /locus_tag="VI413_14475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009018114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-isopropylmalate synthase regulatory
                     domain-containing protein"
                     /protein_id="HEY6915880.1"
                     /translation="MIEIMDTTLRDGEQTSGVSFASHEKLSVARLLLEELCVDRIEIA
                     SARVSEGEFASVKRVAQWARSRGHIDKIEVLGFVDGRLSLDWIRNAGCTVLNLLCKGS
                     LKHCTHQLKKTPEQHVEDIKGVLATAKEMGISVNVYLEDWSNGMRESEDYVYFMVDNL
                     KDQSIKRFMLPDTLGILNPTETYEFCCKMISRYPALHFDFHAHNDYDFAVANVYEAVK
                     AGVKGIHVTVNGLGERAGNAPLSSVLAVLHDHLNMTTDLQEDKINSVSKVVETYSGIR
                     IPHNKPVIGENVFTQVAGVHADGDNKKNLYYNDLLPERFGRERQYALGKTSGKANILK
                     NLQQLGIELDDEMMQRVTARVIELGDKKETVSIDELPYIVSDVLKNEQEEQVIKILNY
                     SLSLAYGLRPMATVKMEIRGKIYEQSASGDGQYNAVSKAMWKIYKGLNKPTPELLDYV
                     VVIPPGGKTDAFVQTIITWKFNDKVFKTRGLDGDQTVAAIKATIKMLN"
     gene            complement(1560..2147)
                     /gene="leuD"
                     /locus_tag="VI413_14480"
     CDS             complement(1560..2147)
                     /gene="leuD"
                     /locus_tag="VI413_14480"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEY6915881.1"
                     /translation="MEKFIKLTSSVVPLPIENVDTDQIIPARFLKATNKDGFGDNLFA
                     DWRYNKDGSPKADFVLNNSTFSGSILVAGKNFGSGSSREHAAWAIDGYGFKVVVSSFF
                     ADIFQNNALNNGVLPVVVSADFLAEVFASVNADPKATLTIDLENQTITNNATDKSETF
                     VINAYKKECLLNGLDDIDYLLSKKEQIEQFEKARV"
     gene            complement(2166..>2827)
                     /locus_tag="VI413_14485"
     CDS             complement(2166..>2827)
                     /locus_tag="VI413_14485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004301124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY6915882.1"
                     /translation="GREFAPKGEEWDKKLAYWKTLKTDEGAAFDKELVFDAADIQPMI
                     TYGTNPGMGMGITDSIPTLDQIDEAGRISYQKSLEYMGFEAGEKLEGKVIDYVFLGSC
                     TNGRIEDFRAFTAFVKGKKKADNVVAWLVPGSWMVEKQIREEGLLDILIEAGFALRQP
                     GCSACLAMNDDKVPAGKYAVSTSNRNFEGRQGPGARTILAGPLVAAAAAISGKITDPR
                     K"
BASE COUNT          814 a          645 c          492 g          876 t
ORIGIN      
        1 attcagcatt tttattgtag cttttatagc cgcaacagtt tggtcaccat caagaccgcg
       61 tgttttaaac actttgtcgt taaacttcca ggtaataata gtttgtacaa aagcatctgt
      121 ttttccacct ggaggaataa caacaacgta atctaataat tccggtgtag gtttattcaa
      181 gcctttataa atcttccaca tggcttttga cacggcgtta tattgaccat ctcccgaagc
      241 tgattgttca tatatttttc ctcgtatctc cattttcaca gtagccatcg gacgtaaccc
      301 ataagcaagt gacagggaat aattaagaat ctttatgact tgctcttctt gttcgttttt
      361 cagaacatca gacacaatat atggtaattc atcaattgaa acagtctctt tcttatcacc
      421 caattcaatg acacgagcag ttacgcgttg catcatttca tcgtcaagtt caattccaag
      481 ttgttgcaaa tttttcaaga tatttgcttt tccggatgtt tttcctaatg catattgacg
      541 ctcacgaccg aatcgttctg gcaataaatc gttataatag agattcttct tgttatcacc
      601 atcggcatga actcccgcaa cctgcgtaaa tacattttcg ccaattacag gtttattgtg
      661 tggaatgcgg atacctgaat atgtttcaac aactttactt actgaattaa tcttgtcttc
      721 ctgtaaatcg gttgtcatat tcaaatgatc gtgcaaaaca gcaagaacgc tcgacaatgg
      781 tgcgtttccg gcacgttcgc ccaagccgtt tacagtaaca tgaattcctt ttactcctgc
      841 ttttactgct tcgtaaacat tggcaacagc aaaatcataa tcgttatgag catgaaaatc
      901 gaaatgcaaa gccggataac gcgaaatcat tttacagcaa aactcataag tctctgtagg
      961 attgaggatt ccaagtgtat cgggcagcat aaatcgtttt atagattgat ctttcagatt
     1021 atcgaccatg aagtaaacat agtcttccga ttcgcgcata ccgttagacc aatcttccag
     1081 gtagacattg accgaaattc ccatttcttt tgcagtcgcc aacactccct tgatatcttc
     1141 aacatgttgc tcaggcgttt tttttaactg gtgtgtacaa tgcttcaaag aacctttgca
     1201 cagcaggttt aaaacggtac agcctgcatt tcgaatccag tccaaggata aacggccgtc
     1261 aacaaatcct aatacttcga ttttgtcaat atgtccacgt gagcgggccc attgagcaac
     1321 gcgttttact gacgcaaatt caccttcaga cacacgtgcc gaggcaattt caattctgtc
     1381 aacgcatagt tcttccagca aaagccgcgc aacgctcaac ttctcgtgcg atgcaaacga
     1441 cactccggag gtttgttcac catcgcgaag cgtggtatcc attatttcta tcataattcg
     1501 atattagatt ttaccttttc caaagatttg atcttcggaa aaggtctaaa ggactataat
     1561 taaactctag ctttttcgaa ctgctcgatc tgttcttttt tactcaacaa ataatctata
     1621 tcatcaagac cattaagcaa acattctttc ttataagcgt ttattacaaa ggtttcagat
     1681 ttgtctgttg cattgttagt tattgtctga ttttcgagat caattgtcaa cgtagccttt
     1741 ggatctgcat taaccgaagc aaaaacttcg gccaaaaagt cggctgatac aactacagga
     1801 agtacgccat tattcagggc attattctga aaaatatcag caaagaagct tgaaacaact
     1861 actttaaatc cgtatccgtc tatagcccag gcagcgtgtt cgcgactcga accggatcca
     1921 aagttttttc cggcaacaag aattgaaccg ctaaaagttg aattgttcaa aacaaaatcc
     1981 gctttaggac tgccatcttt gttgtaacgc caatcggcaa aaagattatc accaaaaccg
     2041 tctttgttgg tagcctttaa aaagcgagcc ggtataattt gatcagtatc cacattctcg
     2101 atcggaagcg gaactacact tgaagttaat tttataaact tttccatttt ttcctaagtt
     2161 caatattatt tacgtggatc tgttattttt ccagagattg cagcagccgc agcgacaagc
     2221 ggacctgcca aaatagtacg tgcacccgga ccttgacggc cttcgaagtt acgatttgat
     2281 gtagaaacgg cgtattttcc tgcaggaact ttatcatcgt tcatggccag gcaagctgag
     2341 caaccaggtt ggcgcaaagc aaaaccagct tcaatcagaa tatctaacag accctcttca
     2401 cgaatttgtt tttctaccat ccaacttccc ggaaccaacc atgctactac attgtctgct
     2461 tttttcttac ctttcacgaa ggctgtaaat gcgcggaaat cttcgatacg gccattggta
     2521 caactaccaa ggaacacata atcaattact tttccttcca gtttttcacc agcttcaaaa
     2581 cccatatatt ccaacgattt ctgataagaa atacgtccgg cttcgtcaat ctggtcaaga
     2641 gttgggattg agtcggtaat acccattccc attcccggat ttgttccgta agtaatcatt
     2701 ggttggatat cagcagcatc aaaaacaagt tctttatcga aagcagcacc ttcgtcggtt
     2761 ttcaatgttt tccagtaagc caatttttta tcccactctt cacctttggg agcaaactca
     2821 cgaccat
//
LOCUS       DATDNM010000871         2537 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_528779, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000871 DATDNM010000000
VERSION     DATDNM010000871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_528779"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VI413_14490"
     CDS             complement(<1..269)
                     /locus_tag="VI413_14490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915883.1"
                     /translation="MKYLNLLILFFAIILTSCNGGEPPLPYTYNANPKYTWGYAEYFG
                     KEYATYGINNNIFSLSLFSESLSIDSTGSLIGTGQYLFLEDIYVAP"
     gene            complement(333..1601)
                     /locus_tag="VI413_14495"
     CDS             complement(333..1601)
                     /locus_tag="VI413_14495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY6915884.1"
                     /translation="MSESNSNINSKFRGLSFSFRIARRYLFSKKSHNAINIISGISAA
                     GVAIGTMALVCVLSVFNGFESVITDMFSAFDPDLKITLAEGKTFDVNTKEFSELRKMK
                     SVAFFSEVVEENALLRFKSKQMPATIKGVSEDFERMTLIDSIMYDGSFILFDGAFQRS
                     IPGLGVASTLGLGSRFIDPLYIYAPKRSTKINLLRPENSFNQMATFVSGIFAVKQAQY
                     DEHYVLVSLDFARDLFEYDKNTVSSVELKLAKNVNPDEAKQQIKTLLGTKFQVKNRYE
                     QQENFFKIMKIEKWITYLILCFILLIASFNIIGSLSMLIIDKKSDIETLRNLGANNLL
                     IKRIFLFEGWMISAVGALIGIGLGAVLCLLQEYFGLLKLGTGYVVEAYPVVTNWGDIA
                     LVFATVLFMGFLAAYYPVRYIRTKPNPTDL"
     gene            complement(1616..1996)
                     /gene="rbfA"
                     /locus_tag="VI413_14500"
     CDS             complement(1616..1996)
                     /gene="rbfA"
                     /locus_tag="VI413_14500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEY6915885.1"
                     /translation="METTRQQKISRMLQKELGEIFLLYARELHGILITVSNVRISPDL
                     GIARTYLSIFPSNKSAEVLAKVQEDKSSIRFDLGKRVRHQLRIVPELFFHVDDSLDYL
                     ENIDNLLKSDPPSPLKEGEVIELD"
     gene            complement(2054..>2537)
                     /locus_tag="VI413_14505"
     CDS             complement(2054..>2537)
                     /locus_tag="VI413_14505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009276628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DALR domain-containing protein"
                     /protein_id="HEY6915886.1"
                     /translation="FSSEALVASEKGLSRLMEGYARLQKLAASATSSVETAGLRAKCE
                     EAMSDDLNTPIVISYLFDALRAINLVHDGKETISAADLEELKSVFATFVEDILGLKSE
                     TEASAGNEAYKKAIDLLLNMRLEAKQNKDWATSDKIRNELTALGFEIKDTKDGFEWKI
                     "
BASE COUNT          785 a          559 c          447 g          746 t
ORIGIN      
        1 ggagcaacat aaatatcttc cagaaacaga tattgccctg tcccgataag acttccggta
       61 ctatcaatac ttaatgactc agaaaacaat gacaacgaaa aaatattatt attgataccg
      121 taagtagcat attctttccc aaaatactct gcataacccc atgtatattt tggatttgca
      181 ttgtacgtat agggtaatgg cggttctcct ccattgcacg aagtcaatat tatagcaaaa
      241 aataatatca gtaagttgag gtatttcatt tgccaacagg cttattaatt tgtttaacct
      301 ttgaataaca aaaaaaatgt aataatgttg ttttacaaat ctgtcggatt aggttttgtc
      361 cggatataac gaaccggata gtacgccgct aaaaatccca tgaaaagaac agtagcgaaa
      421 accagtgcaa tatcgcccca attagttaca accggatagg cttcaaccac ataacctgta
      481 ccaagtttca ataatccgaa gtattcctgc agcaaacaca gaacagctcc taagccaatg
      541 ccaatcaatg ccccaacagc cgaaatcatc cagccttcga acagaaatat ccttttaatc
      601 agcagattat tagcacccaa atttcgcaaa gtttcaatat cggacttttt atcaattatc
      661 aacatcgaca aagaaccaat aatattaaag ctcgcaatca acagaataaa acagagaata
      721 agataggtaa tccatttctc tattttcatg attttgaaga aattctcctg ctgttcgtag
      781 cggtttttta cctggaattt agtaccaagc agggtcttga tttgttgctt cgcttcatca
      841 ggatttacat tttttgccag tttcagttca acagacgaaa ccgtattttt atcatactca
      901 aacaaatcac gggcaaaatc aagcgataca agaacataat gttcatcgta ttgcgcctgt
      961 ttaacagcaa aaattcccga aacaaaagta gccatttggt tgaaactgtt ttcggggcgc
     1021 aacagattaa tctttgtgct gcgtttgggt gcgtaaatgt acaaggggtc gatgaaacgg
     1081 gaacccaagc ctaacgtact tgcaacaccc aatccgggaa tggatcgttg gaaagcccca
     1141 tcgaacagaa tgaaacttcc atcatacata atgctgtcaa taagcgtcat gcgttcaaaa
     1201 tcttcactca cccctttgat tgttgcaggc atttgcttac ttttgaaacg aagcaaggca
     1261 ttttcttcca ctacttcgga gaaaaatgct accgacttca ttttccgcaa ctcgctgaat
     1321 tctttcgtat ttacatcaaa cgttttacct tcagccagtg taattttcaa gtcaggatca
     1381 aaggcagaaa acatatccgt aataaccgac tcgaatccat taaatacgga caacacgcaa
     1441 accaatgcca tggttccgat agccacaccc gccgccgaaa tacccgaaat gatattaatg
     1501 gcgttatgcg actttttgga aaacaagtag cggcgggcta tcctaaacga aaaggatagt
     1561 ccgcgaaatt tgctgtttat atttgagtta ctttctgaca ttcggattta aaatactaat
     1621 ccaactcaat aacttcacct tctttcaatg gtgaaggcgg atcgcttttt agcaaattat
     1681 cgatattttc caaatagtcg agcgaatcgt caacgtggaa aaataactct ggaacaatgc
     1741 gtaactggtg gcgtacgcgt ttacccaaat cgaaacgaat agagctttta tcttcctgca
     1801 cttttgccaa tacttcggcc gatttattac tcgggaaaat gcttaaataa gtccgtgcta
     1861 ttcctaaatc gggactaatt cgcacattgc taacggttat caaaattccg tgtaactcgc
     1921 gggcatacaa caaaaagatt tctcctaact ctttctgcaa catccgcgat attttttgtt
     1981 gtctggttgt ttccattgtt ttttagttta gttatttaat tgtaaaatga agcattagcc
     2041 catttctccg attttatatt ttccactcaa acccatcctt ggtatctttt atctcgaatc
     2101 caagtgcagt cagttcgtta cggattttgt cgctggtagc ccagtcttta ttttgtttgg
     2161 cttccaaccg catattcagc agtaaatcaa tggctttttt gtaggcttcg tttccggctg
     2221 acgcttcagt ttccgattta aggcctagaa tatcttcaac aaaggttgca aaaaccgatt
     2281 tcaattcttc caaatcggca gcagaaatag tttcttttcc atcatgaacc aaattgatag
     2341 cgcgcaaagc atcaaataaa taggaaatta caatcggggt gttcagatcg tcgctcatgg
     2401 cttcttcgca tttggcacga agcccggcag tttctaccga cgaagtagcc gaagcagcca
     2461 gcttttgcaa acgggcataa ccttccatca atcggctcaa gcctttttcg gaagctacca
     2521 aggcttcgga gctaaag
//
LOCUS       DATDNM010000872         2669 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1703921, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000872 DATDNM010000000
VERSION     DATDNM010000872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1703921"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2176
                     /locus_tag="VI413_14510"
     CDS             <1..2176
                     /locus_tag="VI413_14510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005853726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-glucuronidase"
                     /protein_id="HEY6915887.1"
                     /translation="AMVRLKILNLVGHSVNAKVLLVAKSFNSDKSHIVTPVETPVTLL
                     GKDTIVTIVLPMGNEMQTWDEFNPALYNLSTSITFDKQTDVLSTEFGMREITIQGKYF
                     YINGNKTILRGTVENALFPLTGYPPMDESSWERVFRICKSYGLNHMRFHSYCPPDAAF
                     RAADRIGFYLQPEGPSWPNHSTQLGRGLPIDKYLMDETKRMTREYGNYPSFTFMACGN
                     EPRGAWVPWVSKFVDYWKATDSRRIYTGASVGQGWAWQPKNQYHVKAGARGLSWSNAQ
                     PETMSDYRSRIDTIKQPYVSHETGQWCAFPNFDEIKKYTGVTRAKNFELFQEDLADND
                     MGSLGHEFLMASGHLQALCYKHEIERTLRTPDYAGFQLLCLNDYSGQGTALVGVLDAF
                     WDEKGYINAPEFRRFCNSTVPLARIEKFVYRNDETLVAKIEVAHFGKDPLKEAQTVWR
                     IRDTFGLVLKEGVVSVKDIPVGNNFDLGEVNFNLSDIKRAAKLNLEIAIKGTDFVNDW
                     DFWVYPVQTQAVNTEGVYVTTEFDKTALDLLNTGGKVLVLAAKKIQYGKDVVQYYSPV
                     FWNTSWFKMRPPHTTGVFINNYHPVFADFLTESWGNMQWWELLNRAQTMLLTDFPKGF
                     QPIVQPIDTWFVNRKLGMLFEANVGKGKLMMTSIDLTNNLEERPVADNLYRSIVSYMQ
                     SDKFRPAFNVDLKTVTDLYTKTAAPINTYTKSSPDELKKDVK"
     gene            2325..>2669
                     /locus_tag="VI413_14515"
     CDS             2325..>2669
                     /locus_tag="VI413_14515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915888.1"
                     /translation="MEKQLEDLKAIREMMEKSSKFLSLSGLSGVLAGITAILGAGVAY
                     LYILGQSRAVAVPLLIIDALLILVISIGFGILFSARKAKKRKLKLVNSVTLKIAYNLS
                     IPLATGGILSLIM"
BASE COUNT          783 a          483 c          610 g          793 t
ORIGIN      
        1 tgcaatggtt cgattgaaaa tcttaaattt ggttggccac tctgtaaatg ctaaagtttt
       61 attagtggcg aaaagtttca atagcgataa atcacacatc gttacaccgg tagagacgcc
      121 tgtcacacta cttgggaaag atacaattgt gactattgtt ctcccaatgg gtaatgaaat
      181 gcagacatgg gacgaattta atccggcact ttacaaccta agcacctcta taacattcga
      241 caaacaaact gatgttctta gcactgaatt cgggatgcgc gaaattacca ttcagggcaa
      301 atatttttat atcaacggaa ataaaacgat tttgcgtggt acggttgaga atgcactttt
      361 cccactcaca ggttatccgc ctatggatga atcttcgtgg gagcgcgttt tccgcatctg
      421 caaatcctat gggttgaacc acatgcgttt tcactcatat tgtccgcctg atgctgcttt
      481 ccgcgctgcc gacagaatcg gtttttacct tcagcccgaa ggtcccagtt ggccaaatca
      541 tagtacgcaa ttaggtcgtg gtttgcctat cgacaaatat ctgatggacg agacaaaacg
      601 catgacccgg gaatacggta actatccttc gtttactttt atggcttgcg gcaacgagcc
      661 acgtggtgca tgggtacctt gggtgagcaa gtttgtcgat tactggaaag ccaccgattc
      721 acgccgtatt tacacaggtg cttctgttgg tcagggatgg gcatggcaac caaagaacca
      781 atatcatgta aaagccggtg cgcgcggttt gagctggagc aatgcccagc cggaaaccat
      841 gtcagattat cgttcgcgga ttgatacaat taagcagcct tacgtttctc acgaaacggg
      901 tcagtggtgc gcattcccta attttgacga aataaaaaag tatacaggtg taacccgtgc
      961 caaaaacttt gaattgtttc aggaggactt ggccgataac gatatgggaa gccttggaca
     1021 cgagttttta atggcttcag gccatttgca ggctttgtgt tacaagcatg aaattgaacg
     1081 aacgttgcga acacccgatt atgcaggatt tcaactcttg tgcctgaatg attattcagg
     1141 ccagggaaca gctttggttg gcgtgctcga tgctttctgg gacgaaaaag gctatatcaa
     1201 tgctcccgaa ttccggcggt tttgcaattc tactgttcca ttggcaagga tagagaaatt
     1261 tgtttatcgt aacgatgaaa cgttggttgc aaaaatagaa gtcgcccatt ttggaaaaga
     1321 cccgctgaaa gaagctcaaa cggtttggcg tattcgcgat acttttggat tggtgctgaa
     1381 agagggtgtt gtatccgtaa aagatattcc tgttggaaat aattttgact taggcgaagt
     1441 aaatttcaac ttgtcagata taaaaagagc agcaaaattg aatctggaaa ttgctattaa
     1501 aggaaccgat tttgtgaatg attgggattt ttgggtgtat ccggtacaaa cgcaggcggt
     1561 aaataccgaa ggagtttatg taacaaccga atttgacaag acagctcttg acttgcttaa
     1621 tactggcgga aaagtacttg tattggctgc aaagaaaatt cagtacggta aagatgtagt
     1681 tcagtattat tcaccggtgt tttggaatac ttcctggttc aaaatgcgtc caccgcacac
     1741 aacaggggtt tttataaata actatcaccc ggtttttgct gattttttaa cagaatcgtg
     1801 gggcaatatg cagtggtggg aattgctaaa tcgtgcacaa actatgttgc tgactgactt
     1861 tcctaaagga tttcaaccga ttgttcaacc gattgacaca tggtttgtaa accgaaagtt
     1921 gggtatgctc ttcgaggcaa atgtaggtaa aggaaagtta atgatgactt ctattgattt
     1981 gacgaataat ctggaggaac gtccagtggc tgataattta tacagatcta ttgttagtta
     2041 tatgcaatca gataaattcc gcccggcatt caatgttgat ttgaaaactg ttacggattt
     2101 gtataccaaa acagctgcac cgataaacac ttataccaaa agtagtccgg atgagttgaa
     2161 gaaagatgtg aagtagcatt ttgaaataaa ataaaagaag gcggatcagt taaatgattc
     2221 gcttttttta ttttatttca aaaaattacc ggaataattt tgttttatag aatttctaca
     2281 gtaactttgc ggttcaaagt acttttaatt tactagaatc aaaaatggaa aagcaattag
     2341 aagatttaaa agctatacgc gagatgatgg aaaagtcatc taagtttctg tcattaagtg
     2401 gtctgtccgg tgttttggct ggtattacgg ccattttggg tgctggagtt gcttatttat
     2461 atatactggg gcaatcgaga gctgtagctg taccgctgct gataatagat gctttgttga
     2521 tattagtaat ttcaattggt tttggaatct tgttttcggc caggaaggca aagaaacgta
     2581 aactgaaact tgtaaactca gtcactttga aaatagcata taatctgtct attccgctgg
     2641 caaccggagg tatactttct ttgataatg
//
LOCUS       DATDNM010000873         2143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_316157, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000873 DATDNM010000000
VERSION     DATDNM010000873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316157"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..767
                     /locus_tag="VI413_14520"
     CDS             <1..767
                     /locus_tag="VI413_14520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915889.1"
                     /translation="QNMVDTRIDVKGSRYTDQMWIFAVSTCTRDFDNGWDAYKMFGSV
                     VTPQLFAWEANGNFQIDAVPDFNNTYLGFKAGEDSVYTFTFNHEYVDQMYKQLYLIDS
                     VANKTVDIFASGTQYTFTVQKTDVPVKRFKIVTSLPTPPVVVAPTPDPVVVVAPDTVA
                     APTDPVVSPVDNKGKKDKVKNIKIHNAGNTIVVENVGKEKGMLKLYNAVTGKLVKTVS
                     FNATAVTRIPTELKSGSYVVYANTSTEDVTTTVVIR"
     gene            988..1989
                     /locus_tag="VI413_14525"
     CDS             988..1989
                     /locus_tag="VI413_14525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015546910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY6915890.1"
                     /translation="MKKVDKVIWGVIGAGNVCEIKSMPAMYSIPGSAVKTVMRRNAAK
                     VADFARRHTIPNWTTDLDDVLNDSDINAIYIATPPDSHPELTIKAAQAGKAVYVEKPM
                     ANSYAECLAMIEACEKAGVPLFVAYYRRVLPGFVKVKELIDTGVLGDIRLVNIEMYQA
                     LQPELIARSETNWRVQPEISGGGYFQDLASHQLDYLDFLFGDIVDAMGIYRNQAHLYS
                     ADDIVTANFRFKNGVVGSGVWCFSTDIVSEKDKITIVGSKGELSFNTFGNPMVIRLKS
                     AGNIEDELEFNHVQPIQKPLIQKIVNELRSDDVSPSTGITAARTTRVMDMICSKIRK"
BASE COUNT          684 a          365 c          427 g          667 t
ORIGIN      
        1 cacaaaatat ggttgatacc cgaattgatg taaaaggttc aagatatact gaccaaatgt
       61 ggatttttgc agtttctaca tgtacccgtg actttgataa tggttgggat gcatataaaa
      121 tgtttggtag tgttgttact cctcaacttt ttgcatggga agcaaatggc aatttccaaa
      181 ttgatgccgt tcctgatttt aataatacat atttagggtt taaagctggc gaagactcag
      241 tatatacctt tacttttaat cacgagtatg ttgatcaaat gtataaacag ttatatttga
      301 tcgattcggt tgctaataaa acggttgata ttttcgcctc tggaactcaa tacactttta
      361 cagtacaaaa aacagacgta ccggttaagc gctttaagat tgtaacaagc ttaccaactc
      421 ctccggttgt tgtagctcca actcctgatc ctgttgtagt agtcgctcct gacactgttg
      481 cagctcctac tgaccctgta gttagtcctg ttgataataa aggaaagaaa gataaagtta
      541 aaaatatcaa aattcataat gcgggtaata caattgtagt tgaaaacgta ggtaaagaaa
      601 aaggcatgtt gaaattatat aacgcagtga caggtaaact tgtaaaaact gttagtttca
      661 atgcaactgc cgttaccaga atcccaacag aattaaaatc aggtagctat gtagtatatg
      721 ctaatacttc aactgaagac gttacaacta ctgtagtaat ccgctagaca tagagttttt
      781 aatcgttgct taaaggttag ttttttagag gaaaaatgca aagacagata gtctttgcat
      841 tttttctttt tttatatacc gttggtttaa gaacctgctt agatactata tcatacacca
      901 acttattttg agtaatcaat ttaaaattca gcgaaattac ccaatgaaga gtattattcg
      961 ctagttttgt aagaaaatta attgaaaatg aaaaaggttg ataaagtcat atggggagta
     1021 attggcgccg gcaatgtgtg tgaaataaag agtatgccgg ccatgtattc tattccgggt
     1081 tccgcggtaa aaactgttat gcgccgcaat gcagcaaaag ttgctgattt cgctcggcgg
     1141 catactatcc ccaactggac aacggacctg gacgatgtgc tgaatgattc agatatcaat
     1201 gctatttata ttgctactcc gcccgattcc caccccgaat taaccataaa agctgcacag
     1261 gcaggtaaag ctgtttatgt ggaaaagcca atggcaaata gctatgccga atgtcttgcc
     1321 atgattgaag cctgtgaaaa agccggtgtt cctctttttg tggcctatta ccgacgtgta
     1381 ttgcccggtt ttgtaaaagt aaaagaatta atagatactg gtgttctcgg tgacattcgt
     1441 ttggtaaata tcgaaatgta tcaggcttta caaccggaac ttattgcgcg aagcgaaact
     1501 aactggcgcg ttcagcccga aatttccggt ggtggatatt tccaagatct ggcatcgcat
     1561 cagttggatt accttgattt tttgttcgga gatattgttg atgctatggg aatttataga
     1621 aatcaagcac atttatattc agccgatgat attgttacag ccaatttcag gtttaaaaat
     1681 ggtgtcgttg gctccggagt ctggtgtttt agtacggata ttgtttcaga aaaagataaa
     1741 ataactattg ttgggtcgaa aggagagctt tcgttcaata cctttggaaa tccaatggtt
     1801 atcaggttga agtcggccgg aaatatcgaa gatgagcttg aatttaacca tgtgcaacca
     1861 atacaaaagc ctcttattca aaaaatagtg aacgaattgc gttcggatga cgtttcacca
     1921 agtaccggaa taactgctgc ccgcaccacc cgggttatgg atatgatttg ttctaaaata
     1981 agaaaataag aattgtcagt taaatatttt gaactgacat aattttatct ttaaaaataa
     2041 agacttacat ttgcataatt ttaagagtgt acaaaatgca taagcaatta ttaatcatct
     2101 catttttact gtttgcaata actaaaacca tgtcacaaga aaa
//
LOCUS       DATDNM010000874         2000 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1169359, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000874 DATDNM010000000
VERSION     DATDNM010000874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1169359"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..927)
                     /locus_tag="VI413_14530"
     CDS             complement(<1..927)
                     /locus_tag="VI413_14530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine dehydrogenase
                     (aminomethyl-transferring)"
                     /protein_id="HEY6915891.1"
                     /translation="MKDLLQARHIGVSEQDEVFMLQTIGVKSLDELIDQTIPASIRLE
                     GAIELPEPLTERQYAEHIAEIASKNKLYTSYIGQGWYNTCTPAVIQRNIFENPSWYTS
                     YTPYQAEISQGRLEALLNFQTAVSDFTGMPLANASLLDEATAAAEAATMMMNLRSREQ
                     VKNEANILFVDQSVFASTLAVLRTRAKAQGIKLEVGDYSSLKFNSKYFGAIIQYPNAN
                     GNIENYADFVTEAHAAGCKVAVAADILSLSLLTPPGEWGADIVFGSTQRWGIPMGFGG
                     PAAAYFATRDEFKRDMPGRIIGISKDANGKTAL"
     gene            1191..1820
                     /gene="pdxH"
                     /locus_tag="VI413_14535"
     CDS             1191..1820
                     /gene="pdxH"
                     /locus_tag="VI413_14535"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HEY6915892.1"
                     /translation="MIRDIRKQYMFSALDEGSVLPNPLDQFEVWLQEAIESDQLEPTA
                     MILSTVDEHFQPHSRVVLLKELTADSFVFFTNYEGHKAQQIAQNNRVSLVFFWPTLER
                     QVRIEGVAEKMSEVLSAAYFKSRPLENQLGAWASPQSQLIRSKDFLEQQFQYYKQKFG
                     DNIPKPPHWGGYIVKPVSIEFWQGRASRLHDRLLFTVEGSDWKISRLAP"
BASE COUNT          536 a          414 c          459 g          591 t
ORIGIN      
        1 cagggctgtt ttgccattgg catctttgct aatcccgatg atgcgccccg gcatgtcgcg
       61 tttaaattcg tcgcgggtgg caaaataagc agctgcaggt ccgccgaatc ccatgggaat
      121 tccccagcgt tgtgtagagc cgaaaacaat atcggctccc cattctcccg gaggagtcag
      181 cagggacaga ctcagaatgt cagctgctac agccactttg caaccagcag catgtgcttc
      241 agtcacaaaa tcagcgtagt tttcaatgtt cccgtttgca ttcggatatt gtataattgc
      301 tccaaaatat ttcgaattaa atttcaggct tgagtaatcg cccacttcca gtttaattcc
      361 ctgcgccttg gcacgggtgc gtaaaacggc taacgtagat gcaaaaacag attgatcgac
      421 aaaaagaata tttgcttcgt tcttcacttg ctcacggcta cgcaggttca tcatcattgt
      481 tgcggcttcg gctgctgcgg tagcttcgtc gagtaatgac gcattggcaa gtggcatgcc
      541 ggtaaaatcg gaaacggcag tctggaaatt aagcaatgct tccaggcggc cctgcgaaat
      601 ttctgcctga tagggcgtgt atgacgtgta ccacgatggg ttttcgaaaa tgtttcgttg
      661 aattactgcc ggagtgcagg tgttgtacca gccttgtccg atatacgaag tgtaaagctt
      721 atttttcgat gcaatttccg caatatgttc ggcatactgg cgctcggtga gcggttccgg
      781 aagctcaatg gctccttcta aacgaatgga agcgggaatg gtttgatcga ttaattcgtc
      841 caggcttttt acgccaatgg tttgaagcat gaatacttcg tcttgttctg aaacgcctat
      901 gtggcgggct tgaagcaagt ctttcataaa gaggggtatt ttttaatttt aagttccaaa
      961 agtactttat tcttttgtaa aatagtttaa aactcacgaa aagatttgaa cagaaattgt
     1021 ttttttttga caggttgcaa gttgatactt ttcaaccgga taactcacaa atagtcggca
     1081 aaatcaagct aaattaatca gtttttaatg acattattaa accaattcaa cactgaattg
     1141 tttatttgaa tagaaattga attgtcaatt ccaatatgta aatttataat atgattcgag
     1201 atatacgtaa gcaatatatg ttttctgcac tggatgaagg cagcgttcta ccaaatccgt
     1261 tggaccagtt tgaagtttgg ctgcaggaag ccattgaaag cgaccaactg gagcctaccg
     1321 ccatgattct ttcaaccgta gatgaacatt ttcaaccgca ctccagagtt gttttgctga
     1381 aagaattgac ggcagatagt tttgtgtttt ttacaaatta cgagggccat aaagctcaac
     1441 agattgctca gaataaccgg gtttcacttg ttttcttctg gcccacgctg gagcggcagg
     1501 ttcggattga aggtgttgct gaaaaaatga gtgaagtgct ttctgcggct tactttaaat
     1561 cgcggccact ggaaaatcag ctgggtgcat gggcttcgcc gcaaagccag ctgattcgtt
     1621 ccaaggattt tctggagcaa caatttcaat attacaagca aaagttcggg gataatatcc
     1681 cgaaaccacc gcattggggc gggtatattg taaaacctgt ttccatagag ttttggcagg
     1741 gaagggctag tcgtttacac gacaggctgc tttttactgt tgagggcagc gattggaaaa
     1801 tttcccgctt agcaccataa attaatgttg acagaggtcg gtcgggagat gtctttctga
     1861 ggtcttttcg tttattggcg gattatgagt acctttgcac cgctttaaac aaaaaatgta
     1921 tatgactttt accgacttta atatcaacac tccgcttctt aatgcccttg cagacttagg
     1981 gatttcacaa ccaaccacta
//
LOCUS       DATDNM010000875         2537 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1491983, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000875 DATDNM010000000
VERSION     DATDNM010000875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1491983"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1633
                     /locus_tag="VI413_14540"
     CDS             <1..1633
                     /locus_tag="VI413_14540"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY6915893.1"
                     /translation="LCPLAEVDTKVLYPRFQEGSGENADDAAAIIRALLCGMQGGPEI
                     NPHSMMVTVKHWPSQGAGGESLLQYDSVTIKYHMKPWYAAVEANAASVMPGYNTCPFL
                     DPLKGANSSKKVIDYLRNEIKFKGFVVTDWLAANTAQSTESLGAGIDVMGGAPSINTD
                     IDQLVTNIGIDRINEAARRIMDNKIRMGMFENPYADPTCTYNKADHHAIVLNAAKKSI
                     TLLKNNGVLPLKLNSGDEVVVAGPRSTWPNKDNDPNTIWQSIYYDDAQAKTYTQAMTE
                     RGLTAGIKVYQDSCANPKVAVVVIGEKGYTHGTEWADKNPNIPADQLSIIQKFHDKGV
                     KVITVILSPRPYVLTPLMDISDAVMLVYRGGTGIGQATAALIFGDYAPSGRLPFQLPK
                     SDAQLGTDNLNNMAEKWELPYDLGATDAERIRIRSYIKQGLAVPPIFGDPLFQYGFGM
                     QGFNNEASAVPSVKSNSTLQVYPNPFKNTFRVNLGVDSGENHIRIIDVTGKTIIDRTV
                     NAGSVELNLSKCGAGLYNLIVDSKNGIQTCKLLKE"
     gene            1982..>2537
                     /locus_tag="VI413_14545"
     CDS             1982..>2537
                     /locus_tag="VI413_14545"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6915894.1"
                     /translation="MKKTILFLCYLFVAQLLSAQNWQVSGVVTAAEDGLPLPGVSVSV
                     TGTKNMATITNFEGKYSINVPKGKSLTFSYIGYKAEVKQVISGNALNVVLESDSKMLN
                     EVVAIGYGTMKKSDLTGSVASVKADQLQRTPAAGLDQALQGRAAGVTVNANTGQPGAA
                     AEVRIRGIGTVNNSAPIYVVDGVMV"
BASE COUNT          783 a          456 c          580 g          718 t
ORIGIN      
        1 gttatgtcca ttagcagaag tagataccaa agtgctgtat ccacgttttc aggaaggttc
       61 gggcgaaaat gccgacgatg cagctgctat tattcgtgca ttgctttgtg gtatgcaggg
      121 cggaccggaa attaatccgc actccatgat ggtgaccgtg aaacactggc caagtcaggg
      181 tgccggcgga gaaagcttgt tacagtacga ttctgtaacc attaaatatc atatgaaacc
      241 ctggtatgca gccgttgaag ctaatgcagc ctcggtaatg ccgggctata acacttgtcc
      301 gtttctcgac ccgctgaaag gtgcaaactc cagtaaaaag gtgattgatt acctgcgaaa
      361 tgaaatcaaa tttaagggtt ttgtggttac cgactggttg gctgctaata cggctcaatc
      421 tactgaaagt ctgggtgcag gtatcgatgt aatgggtggc gcgccttcta ttaatactga
      481 tattgaccaa ctcgttacaa atattggtat tgatagaatt aacgaagctg cccgtcgcat
      541 tatggataat aaaatccgca tgggtatgtt tgaaaatccg tacgcagacc caacttgtac
      601 atacaataaa gcagatcatc acgctattgt gttgaatgct gcaaaaaaat ccattacact
      661 tttgaaaaat aatggagtgt tgccgctaaa gctgaattcg ggtgatgaag tcgttgttgc
      721 cggccctcgc tcaacctggc caaacaaaga taatgacccg aataccattt ggcaatctat
      781 ttattatgac gatgctcagg caaaaacata cacgcaagct atgactgagc gcgggctaac
      841 tgccggcatc aaagtgtatc aggattcgtg cgctaatccg aaagtggctg tggtggtaat
      901 tggcgaaaaa ggatatacac acggaactga atgggctgat aagaacccaa atatacctgc
      961 agatcagcta agtattattc aaaaattcca cgataaaggc gtaaaagtaa taacagttat
     1021 tttgtcgccg cgcccatatg tgttgactcc gttgatggat atttcggatg cagttatgct
     1081 ggtttaccgc ggtggaaccg gtatcggtca agctacagcg gcacttattt ttggcgatta
     1141 tgctccaagc ggtcgtttgc cgtttcagtt acccaaatcg gatgcgcaac ttggaactga
     1201 taacctgaat aatatggcgg agaaatggga attgccttat gatcttggcg ctaccgatgc
     1261 cgaacgtatt cgtatccgaa gctatataaa acagggactg gctgtaccac ctatttttgg
     1321 agatccattg tttcagtatg gctttggaat gcagggtttt aataatgaag cctcagcagt
     1381 accttctgta aaatcaaatt ctacacttca ggtttatccg aatccgttta aaaatacatt
     1441 cagggtaaat ttgggagttg atagcggaga gaatcatata cggattattg acgttaccgg
     1501 aaaaacgatt attgaccgaa cagttaacgc tggatcggta gaattgaatc tatctaaatg
     1561 cggggctgga ttatataatc tgattgtaga tagtaaaaac ggaatacaaa cctgtaaatt
     1621 actcaaggaa taagtaattt ttaatatatt ttaggtttga aatccttgtt gaaatatgtt
     1681 tcataacaca ttattttaca actatcaaac atacagtcat ttgcaaatgt tgttgtagta
     1741 atattgtgta gtgaaatatg tgaaaagttg aatttttgtg tagtgaaata tttcactgaa
     1801 tcagtttgta cctctatatt tgcatagttc aaaagtgtca aaccgacagt acagaatttt
     1861 aaaaatggga aataataatt cattgaattt tttcttacta aatcttttat caataatatg
     1921 aaatgatttc cggaaaacgg aatgaattcc atttgacaat taaaaaacaa attattatca
     1981 aatgaaaaaa acaattttat ttctgtgtta cctgtttgta gcacaattgt tatcggctca
     2041 aaattggcag gtgtccggtg ttgttacagc ggcagaagat ggacttcctt taccgggggt
     2101 tagtgtcagt gttaccggca ctaaaaatat ggcaaccatc acaaactttg aggggaagta
     2161 ctcaataaat gttccgaaag gaaaatcatt gacatttagt tatatcggat acaaagctga
     2221 agtaaaacag gtaatatccg gaaatgcttt gaacgtggtg ttggagtccg attcaaaaat
     2281 gctcaacgaa gtggtggcta ttggttatgg caccatgaaa aaaagcgatt tgacgggatc
     2341 ggtagcatcg gtaaaggcag accagttgca aagaactcct gctgccgggc tcgaccaggc
     2401 attgcagggg cgcgctgcgg gtgtaaccgt aaatgctaac accggtcaac ccggagcagc
     2461 agctgaagtg agaatccgtg ggattggaac agtaaataat agtgctccta tatatgttgt
     2521 tgatggtgta atggtaa
//
LOCUS       DATDNM010000876         2501 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2025774, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000876 DATDNM010000000
VERSION     DATDNM010000876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2501
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2025774"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..529)
                     /locus_tag="VI413_14550"
     CDS             complement(<1..529)
                     /locus_tag="VI413_14550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005637168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase III"
                     /protein_id="HEY6915895.1"
                     /translation="MSSLRFNAVEEAFKKKALEVTAPSQFTSDYYGKYVFNSAAMGKY
                     LSKDTLKALKNVITKGATLDIALANQIASGMKLWATELGATHYTHWFQPLTDGTAEKH
                     DSFIDYAGAPGETIIEDFSGKLLAQQEPDASSFPSGGIRSTFEARGYTAWDPSSPAFV
                     MDDTLVIPTIFFSYTG"
     gene            complement(1087..2496)
                     /locus_tag="VI413_14555"
     CDS             complement(1087..2496)
                     /locus_tag="VI413_14555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007214347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEY6915896.1"
                     /translation="MKLIKVSHKAKNKMKKYIISLTALFALFSSALSAQTAAPVAPSV
                     DSGDTAWMIVATAFVLLMSIPGLALFYGGLVRRKNVLNVFMQVFILVAVISIEWVILG
                     YSNAFGSNSIEALKPFIGGFDWAFLNNIGIGDLSPYFISHSQLAADGSSVGTIPHIVF
                     IMFQGMFAVITPALIIGAFAERINFKGFLVFSVLWAILIYNPVAHWVWSGDGWLFKLG
                     ALDFAGGTVVHINAGIAAIVTAIMLGKRRDYKGHAIPAHNITYVVIGAGLLWVGWFGF
                     NAGSGLAADGLAGNALMVTNLAAAAAALTWALLDWFLDKRPTVVGISTGAVAGLVAIT
                     PAAGFVGVPGALIIGVAVSLVCFAMVAFVKPKLGYDDSLDAFGVHGIGGILGAILTGV
                     LATPAIQSAYSGAAYGNFHQLWVQLIAIGATIAYSGIGTFILFKITEKIIGVRATDKH
                     EAVGLDESQHGETAYTNFD"
BASE COUNT          725 a          479 c          504 g          793 t
ORIGIN      
        1 cacctgtata tgagaaaaag atagtaggga taaccaaagt gtcatccatt acgaaagcag
       61 gtgaagatgg atcccatgct gtataaccac gagcttcgaa tgtgctgcgg ataccgccac
      121 ttgggaaaga agatgcatct ggttcttgtt gagccaataa tttgcctgag aaatcttcga
      181 taatagtttc acccggtgct cctgcatagt caatgaatga atcatgtttt tctgcagttc
      241 cgtcagttag tggttggaac cagtgtgtgt agtgtgttgc acctaattca gtagcccaaa
      301 gtttcattcc tgatgcaatc tgatttgcca gggcaatatc aagggttgcg cctttagtga
      361 taacgttttt cagcgctttc aaagtgtctt ttgaaaggta tttgcccata gcggcactgt
      421 tgaaaacgta ttttccgtaa taatctgaag tgaattgtga aggagctgta acttcaagag
      481 cttttttctt aaaagcctct tctactgcat taaatctcaa tgatgacata attatatttt
      541 ttgagggtta tattttattg atttttttag aatcttgatt tagatctaac ggaatgatat
      601 aaaatcactg caaaaataat aaaaatgata ctttttatgc tgtgatttga tttctttctg
      661 aaacaatttg atgtttagtt ttgaattgat ttatttttaa ataaaaatat gattaattga
      721 tattaaattg cgctttttag ttgcgaaatg aaaaacagcc atttgataat gatctttgcc
      781 tcttttgttt taaaaatgta tttacgacat gcaaagatac ggtatgtgtg gtgtttttat
      841 tcggtttttg gtttatttaa taatcttctt atcagcactt ttgcttcgtt ttttttttaa
      901 acaaaagagg aaaatagaca ggccatttca tcacgaggtg gcctgtctga aacaataaaa
      961 ctaaaaaaca cacgattgga tgtattcgct atcgtgtttt gcgataataa aaaataatat
     1021 ctttttattc agtcaaatac taccgtcaaa tttgacggta gtgtttgttg aattttgatt
     1081 tatgttttaa tcaaaattag tgtaagcggt ttcaccatgt tgagattcat ccaagcccac
     1141 tgcttcatgt ttgtctgtag cacgtactcc gataattttc tctgtgattt tgaacaatat
     1201 gaatgtgcca atacccgagt atgcgattgt tgcaccgatt gctataagtt gcacccatag
     1261 ttggtggaag tttccgtatg cggcaccact gtaggccgat tgaatggcgg gagttgctaa
     1321 aacccctgtc aatatcgctc ctaaaatacc accgatacca tgtacaccaa atgcatctaa
     1381 tgaatcgtca tatccaagtt ttggtttcac aaaagcaacc attgcaaaac ataccaatga
     1441 taccgctacg ccaattatta atgctcctgg tacgcctaca aagccagctg ccggggttat
     1501 ggctaccaag cctgctacgg ctcctgtgct gataccaaca actgtcggac gtttgtcaag
     1561 gaaccagtcg agtaatgccc aggtaagagc tgctgccgct gctgcaaggt ttgttaccat
     1621 taatgcgttt ccggcaagtc catctgctgc taatccgcta cctgcgttaa atccgaacca
     1681 acctacccaa agtaaacctg cgcctattac tacataagta atgttgtgtg ctggtatggc
     1741 gtgtccttta tagtcgcggc gtttgcccaa cataatggca gttacaatgg ctgcgatacc
     1801 tgcattgata tggactactg ttcctccggc gaaatcaagt gcgcctaatt tgaataacca
     1861 accgtctcct gaccataccc agtgtgcaac cgggttgtag attaaaatag cccaaagtac
     1921 agagaatact aaaaatcctt tgaagttgat gcgctctgca aatgctccga taataagtgc
     1981 cggtgtaatt acggcaaaca tgccctggaa cataatgaat acaatgtgag gaatggttcc
     2041 tactgagcta ccatcggcgg caagttgtga gtgggaaata aagtatgggc ttaaatcgcc
     2101 gataccgatg ttgtttaaga atgcccagtc aaatccacca ataaatggtt ttaatgcttc
     2161 aatagagttt gagccaaatg cgttgctgta gccaaggatt acccattcga tgcttataac
     2221 ggctacaaga atgaatacct gcataaatac gttcagtacg tttttgcgac gaactaaacc
     2281 gccatagaaa agtgcaagtc ctggaattga cattaataat acaaatgcgg ttgctacaat
     2341 catccatgct gtgtcacctg agtctacact tggtgcaacc ggagcagctg tttgggctga
     2401 taatgccgag ctgaatagcg cgaatagtgc tgttaaagat ataatatatt ttttcatttt
     2461 attttttgct ttatgtgata ccttaattaa ttttatcggg t
//
LOCUS       DATDNM010000877         3219 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1064289, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000877 DATDNM010000000
VERSION     DATDNM010000877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3219
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1064289"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..167
                     /locus_tag="VI413_14560"
     CDS             <1..167
                     /locus_tag="VI413_14560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009318884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEY6915897.1"
                     /translation="CIIVALYNAYRGQMDKGYAFAGSNAYLADKIVSVKEVFESLIFD
                     YNRAENAAIA"
     gene            407..1054
                     /locus_tag="VI413_14565"
     CDS             407..1054
                     /locus_tag="VI413_14565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0016052 - carbohydrate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding family 9-like protein"
                     /protein_id="HEY6915898.1"
                     /translation="MKTLKVPFIEALDNINIENAGEILEDAGQRDTVEILNWAKEFPY
                     RPITYFYIARSNDGIFIKYNVHGSMIRAIYSNDQDPVNEDSCVEFFCKVPGNEKYMNF
                     EFNCIGTCKASKRIARNKDVTPYSKEELSMIKRHSTLGRRAFNEMEGMFEWEVTVKIP
                     LRIMGIDPNNMPEKILGNFYKCADGTDSKHYVTWSPVLTEKPDFHRPEFFGELYF"
     gene            1283..1855
                     /locus_tag="VI413_14570"
     CDS             1283..1855
                     /locus_tag="VI413_14570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEY6915899.1"
                     /translation="MKKISLSIAILLFSFTAFAQTWVSDPAHSRLGFTISHLMISHVT
                     GNFKQFEVKAITTKPDYSDAKIDVIAQIASINTDEAKRDTHLKSEDFFNAQKFPTLSF
                     KSVSLLKGKGNLYKLKGNLTMHGITKPVVLDLIFEGKVKNPMTKKDIAVFTMNGILKR
                     SDFDLGSKFPSEMIGDEVTIMASVELSPIN"
     gene            2047..3045
                     /locus_tag="VI413_14575"
     CDS             2047..3045
                     /locus_tag="VI413_14575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HEY6915900.1"
                     /translation="MKIEKISWQGIDAVLLATNVYEAIVIPSVGANLVKLYNKEKKVD
                     ILRTPASDEMETFLNRPQVFGVPLLFPPNRIEDGKYSFAGKDYEFPITIPAQNNYHHG
                     IIKSQPFTVTRTRFSDDAIELEACFFSNRVNDAIFANFPHDFVCKIRFILTDNELTHI
                     VSFTNSGNEPMPIGVGFHTPIRLPFMESSDKSDYKLRLSAGKRWELSERSLPTEKLLD
                     LSDEESTLRNDGMTVTGKPIEIALTDEAIMENGKPYHGAILTNIKENISVYYEVDSQF
                     KHWTLWNNGGEVDWVCPEPQTWAINAPNLKLPRDITGLQAVGAGKTWSGTTRFYVK"
BASE COUNT         1119 a          568 c          603 g          929 t
ORIGIN      
        1 attgcattat cgttgcttta tacaatgcat acagaggaca aatggacaaa ggatatgcgt
       61 ttgctggaag caatgcttat cttgccgaca aaatcgtttc agtaaaagaa gtttttgaaa
      121 gcctgatttt tgactataat cgtgcagaaa atgctgcaat agcttaattt agaaatatac
      181 tctggatttt cttttgaaat taaaaggatt aaacaggcct attggctgtt taatcctttt
      241 tttatgcata actttaaata tctgtctatt cgtgaatagc taaatttaag ttacatttat
      301 tagaataaaa ccgcggcttc attttaacga aaataatcag aaaaacatac gcaatttatc
      361 aaaattattg ggtaatattg cagatagtta caaaaaagat gaaattatga aaacactgaa
      421 agttccattt atagaggcat tagataatat aaacattgaa aatgccggtg agattctgga
      481 agatgcagga cagcgtgaca cggtggaaat attaaattgg gcgaaggaat ttccttacag
      541 gccaattacc tatttttaca ttgcccggtc gaatgatgga atctttataa aatacaatgt
      601 gcatggaagc atgatacgtg ctatctactc aaacgaccag gacccggtca acgaagatag
      661 ttgtgttgaa ttcttttgta aagttccggg taatgaaaag tacatgaatt ttgaattcaa
      721 ttgtattggt acttgcaagg catcaaaacg cattgcacgc aacaaagatg taacaccata
      781 cagcaaagag gaattatcaa tgattaaacg tcattccaca ttaggacgca gggctttcaa
      841 cgaaatggaa ggaatgtttg aatgggaagt gacggtcaaa attcccttac ggattatggg
      901 aattgacccc aacaatatgc ccgaaaaaat cctgggaaat ttctataaat gtgccgatgg
      961 aactgattcc aaacattatg taacgtggag tccggttcta actgaaaaac ccgatttcca
     1021 ccgtccggag ttctttggag aactatattt ttaaatcctg atataaaaat atcaggctga
     1081 tagatccggt tagaatatat tgtcatgcca tccttttaat atggatagca tgactttttt
     1141 attataggca tacaagaatt ataacaacgt aatctttcat ttacaacatt tgtgtagaat
     1201 taatttacca taaagaacaa actaacgaca gtaaccgttt taagaactaa agttcattac
     1261 taacaaaaaa cattgtataa ttatgaaaaa aatcagttta tcaatcgcaa ttttgctttt
     1321 ttcttttaca gcatttgctc aaacatgggt ttcggaccca gcacattccc gactgggatt
     1381 cacaatctca catctcatga tttcacacgt tacgggaaac tttaaacaat ttgaagtaaa
     1441 agctatcaca acgaagccgg attatagtga tgctaaaatt gatgttattg cacaaattgc
     1501 cagtatcaac acagatgaag caaagcgtga cacccatttg aaaagtgaag atttctttaa
     1561 tgctcaaaaa tttccaacat tgagtttcaa gagtgtttca cttctaaaag gcaaaggaaa
     1621 tctttataaa ctaaaaggca atctgaccat gcatggaatt acaaaaccag ttgtgttgga
     1681 tcttattttc gaaggaaaag taaagaaccc aatgacaaag aaagatatag cggtttttac
     1741 aatgaatgga attttgaaaa gatcagattt cgatcttggc agcaaatttc cttcagaaat
     1801 gattggcgat gaagtgacaa ttatggcaag tgtagaactt agtccaataa attagccaat
     1861 caataatatt gttctaaaaa gaggtaatga cataagatat gctattgcct cttttatgtt
     1921 caatgatgtc tttaatattt aaatatcaaa tttcgattaa aaccgatgta ctattcatta
     1981 ctattcacta aatttgtaat gtttcaaaaa tagtcgaatg agactataat ttatcaaaat
     2041 agaaaaatga aaatagaaaa aatttcttgg caaggtattg atgcggtact gcttgcaacc
     2101 aatgtatacg aagcgattgt tatcccttct gttggtgcaa atcttgtaaa actgtataat
     2161 aaagagaaaa aggttgatat tttgcgtacg cctgcgtctg atgaaatgga aacatttctg
     2221 aacagaccac aagtatttgg ggtaccattg cttttcccac caaacaggat tgaagatggc
     2281 aaatacagct ttgctggcaa agattatgaa tttccgatta ccatcccggc gcaaaacaat
     2341 tatcatcacg gcattatcaa atcacaacct ttcacagtta cacgcacccg cttttcggat
     2401 gatgcaattg aattggaagc ctgctttttc tcaaacagag tcaacgatgc aatatttgcc
     2461 aattttccac atgactttgt ctgcaaaatc cggtttattc ttacggataa tgaattgacc
     2521 catattgttt cgtttactaa tagcggcaac gaacctatgc ccatcggagt tggatttcac
     2581 actccaatcc gattgccttt catggaaagc tcggacaaat ctgattacaa actaaggctt
     2641 tcagccggta aacgctggga attatcggaa cgcagcttac caacagaaaa acttcttgat
     2701 ttatcagacg aagagtcaac tctacgaaat gacggaatga ccgtaaccgg caagccgata
     2761 gaaattgcgc tgaccgacga ggccatcatg gaaaacggaa aaccttacca cggggctatc
     2821 ctgacgaata taaaagaaaa tatcagtgtg tattatgaag ttgacagtca gtttaaacac
     2881 tggacacttt ggaacaatgg tggagaagtg gattgggttt gccctgaacc acaaacatgg
     2941 gcaataaatg cacccaactt gaagctgcca cgtgacatca ccggtttaca agctgttgga
     3001 gcgggtaaaa catggagcgg aacaacacga ttctatgtga aataaacaaa agaggaattg
     3061 aaacaaaaaa ggaagagcca agcggttctt ccttttttgt taatctgatt ataacaatca
     3121 acgtggcaat acgtcaatct taagtttatc gtaagcacga ttggctttag ctcgggcttc
     3181 ttcaatagtg tcggcactag ccaggatgac agccaaccg
//
LOCUS       DATDNM010000878         6349 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_102233, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000878 DATDNM010000000
VERSION     DATDNM010000878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 6349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6349
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102233"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1166)
                     /locus_tag="VI413_14580"
     CDS             complement(<1..1166)
                     /locus_tag="VI413_14580"
                     /inference="COORDINATES: protein motif:HMM:NF025965.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4450 domain-containing protein"
                     /protein_id="HEY6915901.1"
                     /translation="MRFQNLKQLSLLALISASSLSFAQTQLEKTQVYDPELNQLVDQK
                     KVSKERELRYHPEGEDFVIANGDAKFNRALYGTHTGFRVETGDVPEFALYLPRMGGNL
                     SFSVGNKEKTIALNNANRIESRYRAGSRIYTITDPLLDNGKFIITALAMSEAEGIVLK
                     IETKNIPANTKLSWKFGGAADKRFSREGDLGVDPVDCFELKPEYCKGNVYTINKNSFS
                     LIFGAKQDKKLIGTFPPTAKLTVREGEYPVLSGNIKATGNKTFYLGIQIPGKTAELPY
                     KSIQAIFEKSDADRAILASQLKIDTPDPYFNTLGGTLAMAADGIWSGETWLHGAVGWR
                     MPLSGWRAAYTGDALGWHDRSRLHFDAYATSQVSNVEPKYPHPNQDTALNMARA"
     gene            complement(1260..2972)
                     /locus_tag="VI413_14585"
     CDS             complement(1260..2972)
                     /locus_tag="VI413_14585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005926579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915902.1"
                     /translation="MKKLIYSVLVTALAFSFSGCTDFFNPDTSEILLEKNYVGDYTEL
                     YSGYMGLAGTVQDVADQASFLEGLRGDLLEPTPNAPREIWDVYNHQDLAGNAFASPKG
                     YYNVIMNANDYLQHVFAYRQKDSTSISATTYKGLVGGALRYKAWAYLQLAKIYGEAVY
                     FDEPVTSYGDISKYPVLKFDDLISKCLELIEVGANGIDGKGDVIWSTELFPGQAQSPT
                     SLSWDRICPPKECLLAELYLYKNEFQKVKENCIAIIKRGGENEASYQLNLSEYNGEWK
                     NFGYSFTRKEHICVQFYDYSLHQTNRYVQYYSNIYPNKYYLRPTGAAISRFKNQLMSG
                     TPGDKYRGSGVSYKEVNGDTVFYKFLPGNITSDKIFTNDVMICLYRAAEVHMFLVEAL
                     VGLGHFEEALAFLNNGVTSFNKNTGKFEGAFVEYPSCLYATSSTSEGSNHGIRGRVTL
                     DPVGTYALSSATALDTLINMRRLDSLIVEETSLEFAGEGKALYAMNRMARRWSSNADR
                     SWATHWTNRAGSNNPGNLWGADVQETWATKIGAKYTNGTGAAVSSSLKTSLDNWFMNY
                     KLTE"
     gene            complement(2983..6195)
                     /locus_tag="VI413_14590"
     CDS             complement(2983..6195)
                     /locus_tag="VI413_14590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005926582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HEY6915903.1"
                     /translation="MKRALTQAFTKDYENLICEFHVTLKNNYLHMNKIKIFALIVALV
                     FSLAASAQNLKLTGTVLEPYYNKPVEGAVISATGLKNSVKTDKDGKFELTLSSSKGEI
                     SVWFPGYYTNIQPIDGRTKIKVILIPQEKTGYSETMLLPFKGATNIREKQTNLFSIQK
                     KDIGLNKNDVEQVLAQIPGLQVIGKSGMPGEGSFFGIRGTNSLTANSSPLIVVNGIPY
                     MPDMNESGIIGGFSKSILNSLNTRDIQNITVLKGSDATLYGSLGSNGVIMIETDKAVD
                     LDTKVEFSSQFGVDMNQSKMPVMGVKDYKNYVGNVALTKYDDMAKVLELFPYLVDDNS
                     YYYKYLYNNNTDWQSLIYAPGLTTDNVLKIKGGDEIAKYDVSIGYKNKAGQMTGTNYT
                     KYYARMNSDVNLSRKISFNSSISMSYMNYGLQEQGMLEGTNPMLAAMKKAPLFSPYEK
                     DADNNLLPDYSVVRDADGNLVENNMVSNPLALVNGINASEQNYDIQINAGVNYKMNEN
                     ISINGIMGLYYFFSRENMFIPGATDRSIMPLFYQLANNTVRSAQGITFNTYFNLNANY
                     NKTFNDIHAVKASIGAQVAMNGNQYDAGTGYNTANDFYKTLGYVSSSSRNYFGYDNTW
                     NWLNYNANAQYIYNHQLAIGASVSLDASSSTGTDASLYQVYPAVSATWMAKNSVLADV
                     DFINKLNVRAEYATTGNSRFSSSLSKYYYINKVYRDLSGLTRAGVPNTKIIPELNQTA
                     NLGVDVSLFNNRLDLTADVYTTKNSNLIIPVSISAAYGTDYLYSNAASANNKGFEVGA
                     QFAAIQTKDLKWYIGGTISSNKSSILSLGGQDKMVMEMADGSAVISEVGKQLYNFYGY
                     QTDKANPVFATAKEASDADLKTAAGTSFAAGDVHFVDQNLDGTIDDRDRVNLGSASPD
                     FFGNLNTNLQYKGFELSANFGYSIGNNMYNAVRRSMESMTDFNNQLVSVNNRWTSEGQ
                     ITAMPRATYADPMGNSRFSNRWIENASYLKLKELSIGYTFKFMGGTTVYIAGENLFTV
                     TNYLGLDPETMYSYDSSLRGFDYAKVPLARSFKLGFNIKL"
BASE COUNT         1674 a         1363 c         1332 g         1980 t
ORIGIN      
        1 tcggcacgcg ccatatttag cgcagtatcc tggttcggat gcggatattt gggttccaca
       61 ttgctgacct gagaagttgc atacgcatcg aagtgcaggc gtgaacggtc gtgccaaccc
      121 aatgcatcgc cggtataagc agcccgccag ccactcagcg gcattcgcca acccaccgct
      181 ccgtgaagcc atgtttcacc gctccaaata ccatcggcag ccatggcaag tgttccacct
      241 aatgtattga aataggggtc gggcgtgtcg atttttaatt gtgaagctaa aattgcacga
      301 tctgcgtctg atttttcaaa aatagcctgg atggatttgt atggcagttc tgccgtttta
      361 cccggaattt gaatgcccag ataaaaagtc ttatttccag ttgcttttat gttgcccgaa
      421 agaaccggat attcgccttc tctaacagta agttttgctg ttggagggaa tgtcccaatc
      481 agttttttgt cttgtttagc gccaaaaatt aaagagaatg agtttttgtt tatggtgtac
      541 acattccctt tgcagtattc gggtttcaac tcaaagcaat caaccggatc aacaccaagg
      601 tcgccttcac gactaaagcg tttgtcggct gcacctccaa atttccacga taattttgtg
      661 tttgccggaa tattttttgt ttcgattttc agaacaatac cttcggcttc gctcatggct
      721 aaagcggtaa ttatgaattt cccgttgtcc agcagaggat cggtaatggt ataaatgcgc
      781 gaaccggccc tgtagcggct ttcaattctg tttgcgttgt tcagtgcaat tgttttttct
      841 ttattaccga cagagaaact cagatttccg cccatgcgtg gcaggtaaag ggcaaactcc
      901 ggtacatcgc ccgtttccac gcgaaatccg gtatgagtgc cgtaaagtgc ccggttgaat
      961 ttggcatctc cgtttgcaat aacgaaatct tctccctccg ggtggtaacg tagttcacgt
     1021 tctttgctta cctttttttg atcaaccaac tgatttaatt caggatcgta aacctgtgtt
     1081 ttctccagct gggtttgtgc aaatgaaagc gatgaagccg aaatcagtgc gaggagagat
     1141 agttgtttta aattctgaaa acgcataaga tttttctgtt tgagaatgaa aaaataaagg
     1201 ttcaggaaac caccaaaatt agtgaaaatc ctgaaccttt tttggatatc gattaaagtt
     1261 tattccgtca acttatagtt cataaaccag ttgtcgagac ttgttttcag tgacgatgaa
     1321 actgcggctc ctgttccgtt ggtgtatttg gctccgattt tagttgccca ggtttcctga
     1381 acgtcagctc cccaaagatt ccccggattg ttgcttccgg ctctgtttgt ccaatgcgtt
     1441 gcccagctac ggtcggcatt gctactccag cggcgagcca tgcggttcat ggcatacagt
     1501 gcttttcctt cgccggcaaa ctcaaggctg gtttcttcaa caatcagcga gtcaagtcgg
     1561 cgcatgttta ttaaagtgtc taacgcagtt gcagaagaaa gtgcatacgt gccaacagga
     1621 tctaacgtaa cacgtccgcg tatgccatgg tttgaacctt cggatgtgga tgaagttgca
     1681 tacaggcagc tcgggtattc tacaaaagca ccttcaaact tacctgtgtt tttattgaat
     1741 gatgtgactc cattgttaag gaatgccaat gcttcttcaa aatgtcccaa tccaaccaat
     1801 gcttcaacca gaaacatgtg aacttcagca gccctgtaca aacaaatcat aacgtcgttg
     1861 gtgaaaatct tatcggacgt gatgtttccc ggtaaaaatt tgtaaaagac agtatctcca
     1921 ttcacttctt tataactaac tccggaccca cggtatttat cccccggagt tccggacatt
     1981 aattgatttt taaaacggct tatagctgca ccggttgggc gcaggtaata tttgttcgga
     2041 tagatgttgg aataatactg aacatagcga ttggtctggt gcaacgaata atcgtagaat
     2101 tgaacgcata tgtgctcctt gcgggtaaat gaataaccga aattcttcca ttcaccgtta
     2161 tattcgctga ggttcagttg gtaggaagct tcattctcac cacctcgttt aataatggca
     2221 atacaattct cttttacttt ctggaattca tttttgtata gatacaattc ggccaataag
     2281 cattctttag gagggcaaat acgatcccac gacaatgaag ttggtgattg tgcctgtccg
     2341 gggaacaact cagtagacca gataacatcg ccttttccat caattccatt tgcgccgact
     2401 tcaatcaact cgaggcattt tgaaatcaga tcatcaaatt tcaatacggg gtatttgctg
     2461 atatctccgt aagaagtaac cggttcatca aaatataccg cttcgccata aattttagcc
     2521 agctgcaggt atgcccaggc tttgtaacga agtgcaccgc ctactaatcc tttgtaagtt
     2581 gttgcggaaa tggatgtcga atctttctga cggtatgcaa aaacgtgttg caaataatca
     2641 ttggcattca taattacatt gtaataccct tttggacttg caaatgcatt tccggctaag
     2701 tcctggtggt tataaacatc ccaaatttca cggggagcat tgggtgttgg ttcaagaaga
     2761 tcgccacgga gaccttcgag gaacgaagcc tggtcggcca catcctgtac cgttccggca
     2821 agtcccatat aacccgaata taactcggtg taatcgccta catagttctt ttccagcagt
     2881 atctccgacg tgtccggatt gaaaaaatcg gtgcaaccac tgaatgagaa tgctaatgcg
     2941 gtaactaaaa ctgaatatat taactttttc atatctagca tattataatt ttatattgaa
     3001 acctaattta aacgagcggg ccagcggaac ttttgcatag tcgaatccac gcaatgatga
     3061 atcgtacgag tacatggttt cgggatccaa ccctaagtaa tttgtaacgg tgaaaaggtt
     3121 ttcgcctgca atataaacgg ttgttccacc catgaattta aatgtgtaac cgattgataa
     3181 ttcttttagt ttcaggtatg atgcgttctc aatccaacgg tttgaaaaac ggctgtttcc
     3241 catagggtcg gcataagtgg cccggggcat ggcggtaatc tggccttcgc ttgtccagcg
     3301 gttgtttaca gaaaccagct ggttgttgaa atcagtcatt gattccatgc tgcggcgtac
     3361 agcgttgtac atgttatttc cgatactgta accaaaattg gccgaaagct caaagccttt
     3421 gtattgcaag ttggtattca ggttcccgaa aaagtcagga ctggcactgc ccaaatttac
     3481 ccggtcgcgg tcgtcaattg ttccatccag gttttgatct acaaaatgaa catcgcctgc
     3541 tgcaaaagaa gtaccggcag cagtctttaa atccgcatca gaagcttctt tcgctgttgc
     3601 aaacaccgga ttcgctttgt cagtttgata gccgtaaaag ttgtaaagct gttttcctac
     3661 ttccgaaatt actgctgaac catcagccat ttccatcacc attttgtctt gtcctcctaa
     3721 agacaaaata ctgcttttgt tcgaagaaat tgttcctcca atgtaccatt tcaggtcttt
     3781 tgtttgtatg gctgcaaact gagcgccaac ttcaaagcct ttgttgttgg cacttgcagc
     3841 gttgctgtat aaataatcgg ttccgtaagc tgccgaaatc gatacgggga taatcaggtt
     3901 gctgttttta gttgtgtaca catcagctgt cagatccaag cggttgttga acaacgaaac
     3961 gtcaacgcca aggtttgcag tttgattcag ttccggaatt atcttcgtgt ttggtactcc
     4021 ggcacgtgtc aggccggaaa ggtcgcgata cactttgttt atgtaatagt acttacttaa
     4081 cgaagatgaa aaacggctgt ttcctgttgt tgcatattca gcacgtacat tcagtttgtt
     4141 gataaaatct acatctgcca gtaccgagtt ttttgccatc caggtagcgc taacggccgg
     4201 ataaacctga tacaatgaag catctgtgcc ggtagaagat gatgcatcca acgatacact
     4261 tgcacctata gcaagttgat gattgtaaat gtattgcgca ttggcattgt aattcagcca
     4321 gttccaggta ttgtcgtatc caaagtaatt gcggctgctt gaacttacat agccaagtgt
     4381 tttgtaaaag tcgttagcag tgttgtaacc ggttccggca tcatattggt ttccattcat
     4441 agctacctga gcaccaatag aagctttcac ggcatgtatg tcgttgaatg ttttgttgta
     4501 attggcattc aggttaaagt aggtgttgaa agtaattccc tgagccgagc gaacggtatt
     4561 gttagccagt tggtaaaaca aaggcataat gcttcgatcg gtagcgccgg gtataaacat
     4621 gttttcgcga ctaaagaaat aatataagcc cataattcca ttgatgctta tattttcatt
     4681 catcttgtaa tttactccgg cattgatttg aatgtcgtaa ttttgctcgg aagcattaat
     4741 gccattcacc agggctaatg gattacttac catgttgttt tcaaccaggt tgccatcggc
     4801 atcacgtact acagaatagt cgggtaacag attattatca gcatcttttt cataaggtga
     4861 aaaaagtgga gcctttttca tggcagccaa cattgggttt gttccttcga gcatgccttg
     4921 ttcctgcaat ccatagttca tgtacgacat tgaaatagat gagttaaacg aaattttacg
     4981 gcttaagttt acatccgaat tcattcgcgc atagtatttc gtataatttg ttcctgtcat
     5041 ttggccggct ttgtttttgt acccaatgga aacatcgtac tttgcaattt catcaccccc
     5101 tttaattttc aaaacgttgt cagttgtcag tcccggagca taaatcagac tttgccagtc
     5161 tgtattgttg ttatacaggt atttatagta atagctatta tcatcgacca gataagggaa
     5221 aagttcaagt actttcgcca tgtcgtcgta ctttgtcaac gccacgtttc caacatagtt
     5281 tttgtagtct tttacaccca tcaccggcat tttggattga ttcatatcta caccaaattg
     5341 agaactgaat tctacctttg tatccagatc gacagctttg tcagtttcaa tcataattac
     5401 cccgtttgac cccagcgatc cgtaaagcgt ggcatcagag cctttcagca cggttatatt
     5461 ttgaatatcg cgtgtattca acgagttcaa aatgcttttt gaaaaacctc cgataatacc
     5521 ggattcattc atatccggca tatatggtat gccattaaca acaatcagag gggaggagtt
     5581 tgcagtcagc gaatttgttc cgcgaatacc aaagaaactg ccttcgccgg gcattccgct
     5641 ttttccgata acctgtaatc cgggaatttg agccagtacc tgttcaacat catttttatt
     5701 taagccgatg tcttttttct gaattgagaa taaattggtt tgtttttcgc ggatgttggt
     5761 tgccccttta aacggcaata acatggtttc ggagtatccc gttttctctt gaggaataag
     5821 aatcaccttt atttttgttc ttccatcaat aggctgtatg ttggtgtaat atcccggaaa
     5881 ccatacgctt atttctccct tcgaagagct gagcgtaagc tcaaacttac catctttgtc
     5941 ggtttttacc gagttcttca gaccagtagc gctaattaca gcaccttcaa ccggcttgtt
     6001 gtaatagggt tccaatactg tacctgtcag tttaaggttt tgggcagatg ccgccaaact
     6061 aaaaaccaat gcaacaataa gtgcaaatat tttgatttta ttcatgtgta aataattgtt
     6121 ttttaaggtc acatggaact cgcatatgag attttcatag tctttggtga acgcctgcgt
     6181 taatgctcgt ttcatatcgt attgtgttta ttcgattaat aattattggc tgtgggtttt
     6241 aatgcccagt ggtaaatatc taaggttttt ttagtgccga tagctgccgg acctagatat
     6301 tccactttta ttttgaatga ggccatgcca tcaccatcaa cagtaacta
//
LOCUS       DATDNM010000879         2303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2132662, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000879 DATDNM010000000
VERSION     DATDNM010000879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2303
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2132662"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..182)
                     /locus_tag="VI413_14595"
     CDS             complement(<1..182)
                     /locus_tag="VI413_14595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEY6915904.1"
                     /translation="MTVKSICELIEEVAPLALQESYDNAGLLVGDSQMEITSVLLCID
                     ITEEVIAEAIQKKCNL"
     gene            complement(221..640)
                     /locus_tag="VI413_14600"
     CDS             complement(221..640)
                     /locus_tag="VI413_14600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5606 domain-containing protein"
                     /protein_id="HEY6915905.1"
                     /translation="MLKEILSVTGKPGLFKLVSQGKNMLIVESLLDGKRIPAYTKDKV
                     VSLGDIAIFTETAEVPLGQVLEALKVKESGAVCSIDPKADNDKLRKFMGEILPDYDRD
                     RVYPSDIRKLLSWYNILINAQITEFLAEEKEEAVTAE"
     gene            complement(727..1455)
                     /gene="hisA"
                     /locus_tag="VI413_14605"
     CDS             complement(727..1455)
                     /gene="hisA"
                     /locus_tag="VI413_14605"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEY6915906.1"
                     /translation="MIEIIPAIDLIDGKCVRLSQGDYAQKTVYNENPLEVAKMFADAG
                     IRRLHLVDLDGAKAHHIVNHKVLEKIANGTDLVVDFGGGLKSDDDLRIAFECGASMVT
                     GGSIAVKNSDIFTSWISKFGGEKIILGADVKNEKIAVGGWLETTELDLMPFILNYMEQ
                     GISKVICTDISKDGMLQGPAIELYKKMLSEKPDIYLIASGGVSSIRDIELLHEAAVPA
                     VITGKAIYEGRIKLEELTRLIIKN"
     gene            1680..>2303
                     /locus_tag="VI413_14610"
     CDS             1680..>2303
                     /locus_tag="VI413_14610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEY6915907.1"
                     /translation="MGLDITEILKIAPAAVIGLTVHEFSHAFAAYKLGDNTAKNEGRL
                     TLNPIKHIDWLGFFLIVVAGFGWAKPVSFNPDNLKNKHRDEILISIAGPISNFIIAVL
                     FFVIARLLYFVDYFNSSTFGLEIIQLIVVWGVINFSLFVFNLIPIPPLDGSHLYLTYL
                     KDLNPKLMLNMYKYGTIGLLAIILIENNLNINILHISNLVGGITSFFF"
BASE COUNT          709 a          458 c          346 g          790 t
ORIGIN      
        1 atcaggttac attttttctg aattgcctct gcaattactt cttcggtaat atcgatgcaa
       61 agcagcaccg atgtaatttc catttgcgaa tctcctacca aaagtccggc gttgtcataa
      121 ctttcttgca atgctaacgg agcaacttct tcgataagtt cacaaataga ttttacggtc
      181 ataaataatt aatttacaat tgtttaatta caaatatcaa ttactcagct gtaactgctt
      241 cttctttttc ttcggctaaa aactcagtaa tttgagcgtt aatcagaata ttataccatg
      301 ataacaattt acgaatatcg cttgggtaaa ctctgtctcg atcataatcc ggcaaaattt
      361 cgcccataaa tttgcgaagt ttatcgttat cggcttttgg atcgatagaa cacacagctc
      421 cgctttcctt tactttgagg gcttcaagta cctgtccaag tggcacttcg gcagtttctg
      481 tgaaaatagc aatatcgcct aatgatacta ctttatcttt tgtataagca ggaatgcgtt
      541 tcccatcaag caaagattca acaatcaaca tgtttttacc ttgcgacacc aatttgaaaa
      601 gtcccggttt gccggtaact gataagattt ctttcaacat aatatttttc gtaatgaatt
      661 tctttttttc gattattttg aactgacaaa tataatacta attgccaatt tctcaactct
      721 gaattattaa tttttaatga ttaaccgtgt cagctcttcc agtttaattc taccttcgta
      781 aatggctttt ccagttataa ccgcaggaac agctgcttca tgcaacaact caatatcacg
      841 aattgaactt actccaccac tggcaatcaa atatatatcc ggtttttcag aaagcatttt
      901 tttataaagt tcaatagcag gtccttgaag catcccgtct ttactgatat cagtacaaat
      961 tactttgctg attccctgtt ccatataatt aagaataaag ggcatcaagt caagttcggt
     1021 agtttccaac cagccgccaa ctgcaatttt ctcatttttc acatcggcgc cgagaataat
     1081 tttctccccg ccaaatttac taatccacga agtaaaaata tccgaatttt taaccgctat
     1141 actcccaccg gtaaccatgc ttgccccgca ttcaaaggct attcgcaagt catcatccga
     1201 tttgagtcca cctccaaaat caacaaccag gtcagttccg tttgcaattt tttcgagaac
     1261 tttatgattt acaatgtgat gggcttttgc tccatctaaa tctactaaat gcaacctgcg
     1321 aataccagca tctgcaaaca ttttagctac ttctagcggg ttttcattgt agacagtttt
     1381 ttgagcataa tcgccttgcg acaagcgaac acattttcca tcaatcaggt cgatggcagg
     1441 aataatttct atcactttta tttacaaatt ataaatttat cttcttttga aaagtaaaac
     1501 aaaagtacta ataatagagg gattcggcaa atagaattaa ccatcatatg aatttttgat
     1561 tagtcattag aatttcaaat tcaattcaca ttaataatta acagcaaaca tagtttcgtc
     1621 aacgataaat ggatatattt gcaaacaagt ttgcaaatat acattaacta aaaataaaca
     1681 tgggattaga cataacagag attttaaaaa ttgcaccggc agctgtaatc ggactgacag
     1741 ttcacgagtt ttcacacgcc tttgcagcat ataaactggg cgataatact gcaaaaaacg
     1801 aaggacgatt aacattaaac ccaattaaac atattgattg gcttggattt ttcttgattg
     1861 tcgttgcagg atttggttgg gctaaaccgg ttagtttcaa tccggacaat ctgaaaaaca
     1921 aacatcgcga tgagattttg atttcaattg caggtccaat ttccaatttc attattgcag
     1981 tactgttctt tgtaattgcc cgtctactct attttgtaga ttatttcaat tcttcaacgt
     2041 ttggtctgga aattattcaa ctaattgttg tctggggagt tatcaatttc agcttatttg
     2101 tttttaacct gattccaatt ccaccacttg atggctccca cttatatctt acttatctta
     2161 aagatttaaa tccaaagtta atgttgaata tgtacaaata tggaactatc ggattgcttg
     2221 ctatcatttt gattgaaaat aatttgaata tcaatatttt acatatttca aatttagtgg
     2281 gtggcattac ctctttcttt ttc
//
LOCUS       DATDNM010000880         3755 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_102631, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000880 DATDNM010000000
VERSION     DATDNM010000880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3755
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102631"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1341
                     /locus_tag="VI413_14615"
     CDS             <1..1341
                     /locus_tag="VI413_14615"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HEY6915908.1"
                     /translation="SNDSTPLLDCRMQLSPLPSKNISVDIEGTNSSGNLGVAGNLNFQ
                     HRNVFKGAEVFDFQIRGARERQQAFLNDNSLNFNTREFGLESSLTFPKFLSFIRWKGM
                     FRFQTPETKLTAGYNYQERRDYTRSITNLKFGYNWKTSAYHFHTLNIVDLNYVILDKN
                     KLNPDFINLIKNLYIKSSFTDHLISATNYSWLYNTQNINKREDYKYFKINLESAGNLL
                     NQYANLVNKKKTVFFDKVTSQQSSYYEIMNVRFAQYVKGDFEYRYGHIIDRLSSWVGR
                     AYVGIGVPFGNFDVMPFEKKYFTGGANGIRAWQVRSLGPGTYKPPVDSLGNNRNIANQ
                     LSDIKLEANLEYRFKLFWIMEGAFFLDAGNIWAINNKDNREGAVFKVNEFYKQIAVGT
                     GTGLRFDFTYFLFRLDLGMKLRDPSLPAGQRFIPGNYRIRGEHFNLSFAIGYPF"
     gene            complement(1588..2583)
                     /locus_tag="VI413_14620"
     CDS             complement(1588..2583)
                     /locus_tag="VI413_14620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009596759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEY6915909.1"
                     /translation="MSTSYKDLGLKNTTEMFAKAVDGGYAVPAYNFNNLEQLQAIIQA
                     CVETKSPVILQVSSGARKYANSNLLRNMARGAVEYAKELGCEIPIALHLDHGDTFELC
                     KDCVDNGFSSVMIDGSHHSFEDNIALTKKVVEYAHANGVTVEGELGVLAGVEDDVVAE
                     HSHYTKPEEVIEFVTRTGVDSLAISIGTSHGANKFTPAQCTKNEDGVLIPPPLRFDIL
                     EEIEQKLPGFPIVLHGSSSVPKEDVETINKFGGALKDSVGIPEEQLRKAAKSAVCKIN
                     IDSDGRLAMTAAIRKVFAEKPGEFDPRKYLGPARDALKELYAHKNINVLGSAGKA"
     gene            3344..>3755
                     /locus_tag="VI413_14625"
     CDS             3344..>3755
                     /locus_tag="VI413_14625"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013445430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEY6915910.1"
                     /translation="MTKISEVVKRGVVSGADLQKVFKIAKENQFALPAVNVVNSDSVN
                     AVLEAAKLVNSPVIIQFSNGGAQFYAGKGLKLDGQQAQIAGAVAGAKHVHSLAELYNV
                     HVVLHTDHAAKKLLPWIDGLLEAGEKHFAETGKPL"
BASE COUNT         1138 a          741 c          729 g         1147 t
ORIGIN      
        1 tctaacgatt caacgccttt gctcgattgc agaatgcagt tgtcgccttt gcccagcaaa
       61 aatatttcgg tagatattga aggaaccaac tcctcgggga accttggggt ggcgggcaat
      121 cttaattttc agcaccgcaa cgtatttaaa ggagctgaag tgtttgattt ccaaatcaga
      181 ggggcacgtg aacgacaaca ggcttttctg aatgataata gccttaattt taatacccgg
      241 gaattcggcc tggaatcaag ccttacattt cctaaatttt taagcttcat ccgttggaag
      301 ggtatgttca ggttccagac tcctgaaacc aaactaacag ccgggtacaa ttaccaggaa
      361 agaagagatt acacccgatc aatcactaac cttaaattcg gatataactg gaaaacttcc
      421 gcctatcatt ttcatacttt aaatattgtg gatttgaact atgtgatttt ggataagaat
      481 aagctgaacc ctgatttcat taatttaata aagaacttat acatcaaaag cagttttacc
      541 gatcacctga tttctgctac caattacagc tggttataca acacgcaaaa catcaacaag
      601 cgggaggatt ataaatactt caaaataaac cttgaatcgg caggtaatct attgaatcaa
      661 tatgccaacc ttgtcaataa aaagaaaact gtattttttg acaaggttac ctctcagcaa
      721 agttcctatt acgagatcat gaatgtgcgg tttgcccagt atgtaaaagg cgattttgag
      781 tatcgctatg gccatattat cgaccggttg agttcatggg tgggcagggc atatgttggg
      841 ataggggttc cttttggtaa ttttgatgta atgccttttg aaaagaaata ttttaccggc
      901 ggagccaatg gcatccgtgc ctggcaggta cggtccctgg gccccggcac ctacaaaccc
      961 ccggttgaca gtttgggaaa caacagaaac atcgccaacc agttatcgga tatcaaactg
     1021 gaagcaaacc tggaataccg ctttaagctg ttctggatca tggaaggtgc ctttttcctg
     1081 gacgcaggta atatatgggc catcaacaat aaagataacc gcgaaggggc cgtatttaaa
     1141 gtgaacgaat tttacaagca gatagccgta ggtaccggaa caggcctaag atttgatttt
     1201 acctatttcc ttttccgttt ggatttggga atgaaacttc gcgatccttc cctgccggca
     1261 ggacaacgtt ttattccggg aaattatagg ataagaggcg agcattttaa cctctcattt
     1321 gctatcggct atccgttcta aaggaacaaa ccccttgctt taaaatcaag ggaaatatcc
     1381 aatattcaat gtagaatatc caataaggaa taaggaacaa gaaatatgaa ataacgaagt
     1441 gctgcttttt tacttcctta tttcatattt cttgttcctt attccttatt ttttcatctt
     1501 ctaattatgg ttccacatct aaatctattg cataaaaaaa ggggtcaact caattggccc
     1561 cttttcgata tttacaaaat gcagagatta agcttttccg gctgaaccca atacattgat
     1621 atttttgtga gcgtaaagtt ctttcaacgc atcgcgggct gggcccaggt atttgcgagg
     1681 atcgaattct cctggttttt ctgcaaacac tttacgaata gcagcagtca tagccaaacg
     1741 accatccgag tcaatgttga ttttgcatac ggctgattta gcagctttgc gaagttgttc
     1801 ttccggaata cctactgaat ctttcaatgc acccccaaat ttgttaatgg tttcaacatc
     1861 ttcttttgga acagaagaag aaccatgaag tacgattggg aatcctggca atttttgttc
     1921 aatttcttcc agaatgtcga aacgcagtgg aggtggaatc aatactccgt cttcattttt
     1981 agtacactgg gcaggagtaa atttgttggc tccgtgagaa gtaccgatag aaatagccaa
     2041 agaatcaacc cctgtacgag ttacaaattc aattacttct tcaggttttg tataatgtga
     2101 atgttcagct accacatcat cttccacccc ggccagtaca cccagttcac cttctacagt
     2161 cactccgtta gcatgcgcgt attcaacaac tttttttgtc aatgcaatgt tgtcttcaaa
     2221 cgagtggtga gatccatcaa tcattaccga agagaaacca ttgtcaacac agtctttgca
     2281 aagttcaaaa gtatcgccat ggtccaaatg caaagcgatt ggaatttcgc atcccagttc
     2341 ttttgcatat tctactgctc cgcgagccat gttgcgaagt aaattcgaat tggcatattt
     2401 gcgtgctcct gatgaaacct gaagaattac cggggatttt gtttcaacac aagcctggat
     2461 aattgcctga agttgttcaa ggttgttgaa attgtaagca ggaacggcat aaccgccatc
     2521 aactgccttg gcaaacatct cagtggtgtt ttttaatcca agatctttat aactagtact
     2581 catttgtttg atttttttta attaacaaaa gtaatatcgg cacttttttc aaaagccctg
     2641 caatgataac gaattaaagg taaagattaa actcttgttt agtatagtgc acaagttttt
     2701 aaaaaatact taacacagtt tttcctcttt tctatctgcc gaatcaacat gacttgaatt
     2761 gcatgcgaaa aatggaaaac aaagccaccg acttccgaaa aataattggc tctgatggtg
     2821 ccttaaagcc atccgtctca tcccatccat ttgcagctct taaggaatca aaattagcct
     2881 ggatttttgc tgccgagggg tatcaataac atgattttaa cttcaatgtg atgagtttgc
     2941 ctctatatcc cttcaaacca agttctaacc atcttcttta ttaatacata tataattcgt
     3001 atataattca aatataatac gaacaaatac gaataatata cgtattatat ttgtattata
     3061 ttcgaattaa attcgaatta tattagaaga tggttagaag cattattgaa gatggttaga
     3121 agcaaacccc aattattaga caagtcctgg tgtcttattg gaataccggt ttcttaataa
     3181 ttttataaat gaatggcgaa ggatcggata ggaatcttaa gctacttatc ccaatagaag
     3241 attgtttatt tttattcaat gttgattgaa caatatttga tatgcttagt tataatctta
     3301 ctagaaatta aattgaagaa atatcattta aaacaattat ccaatgacta agatttcaga
     3361 ggttgtaaaa cgaggcgttg tatctggggc tgacttgcag aaagttttta aaattgctaa
     3421 agagaaccaa tttgcattgc ccgctgtaaa tgttgttaac tcagactcgg taaatgctgt
     3481 tttggaagct gccaagttgg tcaattctcc tgttatcatt cagttctcca atggaggtgc
     3541 ccagttttat gcaggaaagg gactaaaact tgatggtcag caggcccaga ttgcaggagc
     3601 cgttgccgga gccaaacatg tacactcgct tgccgagctt tataatgtgc acgttgttct
     3661 gcacacagat catgctgcca aaaaactatt gccctggatt gatggacttc tggaggcggg
     3721 tgaaaaacat tttgctgaaa ccggtaagcc tttgt
//
LOCUS       DATDNM010000881         2172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2132839, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000881 DATDNM010000000
VERSION     DATDNM010000881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2132839"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..766)
                     /locus_tag="VI413_14630"
     CDS             complement(<1..766)
                     /locus_tag="VI413_14630"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HEY6915911.1"
                     /translation="MKLTDQKKKMVVCYGEVLWDIFPTQTKPGGAPMNVAYHLRKLGI
                     DSRMISRVGNDEAGEKLLKLLTEWNIPTENCQIDQTYETGKVIATVLPGNEMSYSIHS
                     PVAWDFIAPKINYNSLVSEAEAFVFGSLVTRNDTSRSTLYQLIEKAKFNVFDVNLRQP
                     FYSPQTIKYLLGKCNLLKLNEVELKLISTWFTNEKKEEETSVRFLQHEFDIDEVIVTK
                     GAEGASYYTQTESFSFPAYKVTVKDTCGSGDSFLAAF"
     gene            complement(842..1843)
                     /locus_tag="VI413_14635"
     CDS             complement(842..1843)
                     /locus_tag="VI413_14635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6915912.1"
                     /translation="MKKNVSLKDIAEHVGVSTALVSYVLNNKLKDRINKEVAAKIRQA
                     AEDLNYRPNQIARSLKAQKTFTIGLIVADISNPFSSQIARIIEDEAKRYGYSVIFGSS
                     DESEEKTQDLIKLLLNRQVDGLIIALPEHTEEQAQYLKRTNVPFVLIDRYFPGIQTNY
                     VSINNHNAAGKAIQHLLENGHKRIGVVAYQTSLFHLNERIRGAVDILADNAMVGEVRI
                     NSINQDVMTAIDRFLSDPNPVDAIFFTTNLLTVSGLKYINSIGIKIPEQMAVVGFDET
                     DAFDLFYTPVSYIKQPMHELGKKSVELLLKTIDNPENLESVELDTELVIRNSSIIKK"
     gene            complement(2062..2138)
                     /locus_tag="VI413_14640"
     tRNA            complement(2062..2138)
                     /locus_tag="VI413_14640"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2102..2104),aa:Met,seq:cat)
BASE COUNT          604 a          389 c          407 g          772 t
ORIGIN      
        1 aaaaggcagc caaaaacgaa tcgccgcttc cgcatgtgtc ttttactgtt actttatagg
       61 ccgggaatga aaaagattct gtttgagtgt aatagcttgc gccttctgca cctttagtga
      121 caatcacttc gtcaatatca aattcatgtt gtaaaaagcg aactgaagtt tcttcttctt
      181 ttttttcatt tgtaaaccag gtactgatta attttaattc aacctcgttt aattttaata
      241 aattgcactt tccaagtaag tacttgattg tttgaggaga ataaaatggt tggcgtaagt
      301 ttacatcaaa tacattaaat tttgcttttt cgatcagttg gtataaagtc gagcgcgagg
      361 tgtcgttgcg ggttacaagg cttccgaaca caaatgcctc ggcttcactc accaaactgt
      421 tgtaattgat tttaggagca ataaaatccc atgccaccgg tgaatgaatg gagtaactca
      481 tttcgtttcc gggcaacaca gtggctatta cctttcctgt ttcgtaagtt tggtcaatct
      541 ggcaattttc agtgggaata ttccattcag tgagtaactt taataacttt tcaccagcct
      601 catcgtttcc tacgcggctg atcattctac tgtcgatgcc taatttacgt aaatgataag
      661 ctacattcat cggtgctcca ccgggtttag tttgtgttgg aaaaatgtcc cacaacactt
      721 cgccatagca caccaccatt ttcttttttt gatctgttaa tttcatgttt tttgattttt
      781 tgggttattg attattttta ttgtagtgct gtttaaacgt ttaaacatgg tgataaaaaa
      841 attatttttt gataattgat gagttcctga tgacaagctc ggtatcaagt tcaacagatt
      901 caaggttttc tggattatca atcgttttaa gaagtaactc taccgatttt ttcccaagtt
      961 cgtgcattgg ttgcttaatg taactgactg gcgtatagaa taaatcaaaa gcatctgttt
     1021 cgtcaaaacc aacaacggcc atttgttccg gaattttaat tccaatgcta ttgatatatt
     1081 ttaatcctga gacagtaagt aagtttgtcg tgaaaaaaat ggcatctaca ggatttggat
     1141 ctgacagaaa tctgtcgata gcagtcataa catcctgatt tatggaattt atccggactt
     1201 ctccaaccat tgcattatca gctaatatat caacagcccc cctgatacgt tcgttcagat
     1261 gaaataatga ggtttggtaa gctaccacac caatgcgttt atgcccgttt tccaataaat
     1321 gttgaattgc ttttccggca gcattatgat tattgattga aacataattt gtttgaatgc
     1381 ctggaaaata acggtcaatt aacacaaaag gtacgtttgt acgtttgaga tattgagcct
     1441 gctcttctgt atgttccggc aatgcaatga tcaacccatc cacctggcgg ttaagaagta
     1501 attttattaa gtcctgggtt ttttcttcac tttcgtcgga gctcccaaaa attacagaat
     1561 atccatagcg tttagcttcg tcttctataa tgcgggctat ttgtgatgaa aatggattgg
     1621 aaatatctgc tacaatcaag ccaatggtaa aagttttttg agctttgagg cttcttgcaa
     1681 tttgattcgg gcggtagttg aggtcttcgg ctgcttgtct gattttagca gctacctctt
     1741 tattgattct gtcttttaac ttattgttca acacatacga taccagcgct gttgaaactc
     1801 caacatgctc tgctatgtct tttaaggata cattcttttt cataaatgta gatgtgtttt
     1861 ttcgtgttga acagatttaa tggcacaaat atatgtttaa tcgtttaaac ttgttttttt
     1921 tgtacgaata tttatttttt atttatattt gattacattt atttgcgaag ttaaatatat
     1981 aaatataatg gatgtgttgg taatgagaag tttattttga tgaaagaaaa agaggaagcc
     2041 catttctgaa cttcctctta gtggtagcgg gaacgagagt tgaactcgtg acctccgggt
     2101 tatgaatccg acgctctaac caactgagct atcccgccat ttttctaaag cggtgcaaag
     2161 ataggctttt ta
//
LOCUS       DATDNM010000882         2250 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_2026810, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000882 DATDNM010000000
VERSION     DATDNM010000882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2026810"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            238..909
                     /locus_tag="VI413_14645"
     CDS             238..909
                     /locus_tag="VI413_14645"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915913.1"
                     /translation="MENYPVKIKSIRHITHDVLQIVTEKPAQYKFTPGQATEITINKE
                     DWLEQARPFTFTCLPGDDYLEFTIKTYPARKGVTNELLKLKTADELILHDVFGAISYK
                     GEGVFIAGGAGVTPFISIFKYLQSKNKIGNNKLIFANKTKADIILEKEFNGLLGENFI
                     NILSNEKVEGFAYGQITEDFLKAYVNDSIRHVYLCGPPPMMDAVLKQLSALGIDETII
                     IVEEV"
     gene            948..1859
                     /locus_tag="VI413_14650"
     CDS             948..1859
                     /locus_tag="VI413_14650"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6915914.1"
                     /translation="MRYFGKNIKIIVNNLMISYTDAGPDDAPVIIFIHGFPLNKSMWN
                     KQIEALKENYRVIAYDIRGHGDSEMESEPFSIDLFVKDLISFMDVLKIDKASLCGLSM
                     GGYIALKAIKRNPLRFESLVLADTTCIADQPETIVKRKNAIKSIKEEGVVLYAEESVK
                     SLFAPESLPRKLVEIAAVKEMIISTQDESICQTLRALSVREETCSFLSSIKIPVLVLV
                     GEYDKITPPFAAAFIHKNIAGSKMFIIDHAGHLSNLENPDAFNDRLNAFFSTVYLKPE
                     IVEQEIYNSFVKRMAKQLNIFWTSIWI"
     gene            1926..>2250
                     /locus_tag="VI413_14655"
     CDS             1926..>2250
                     /locus_tag="VI413_14655"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6915915.1"
                     /translation="MNKNTDKTSSAIARAEYIEVEPNVRLHVTDAGDGKVIVLIPGWP
                     LSDEMYEYQYNDLINNNFRVIGITLRGFGKSDKPYGAYSYDVHALDIKRVLDHLDIKD
                     ATLCGF"
BASE COUNT          759 a          384 c          466 g          641 t
ORIGIN      
        1 gaactgctta ccaaaatact caaaatggaa gaagatcatg tggaatgggc agaaatgcaa
       61 cttgcgcaga ttgagcaaat gggcatagaa aattacctgg ttaaccagac tgaagaggat
      121 acccgttgaa gttccgaaag aaattagaat acaattttaa gctgatgaga gcatattaaa
      181 aatggtgaca tatttataat gctgtggtga tgacgttaac ctattaaaat aactgtcatg
      241 gaaaactatc ctgtaaaaat taaatcaatc cggcatatca ctcacgatgt gctgcaaatt
      301 gttactgaaa aacccgctca gtacaaattc acccccgggc aagccaccga aattacaatt
      361 aataaagaag actggctgga acaggcgaga cctttcactt tcacttgcct gcccggagat
      421 gattatctcg aatttacgat taaaacatat cctgcaagga aaggtgtaac caacgaactg
      481 ctaaaattaa aaacagctga tgagttgatt ttgcacgatg tgtttggagc catttcgtac
      541 aaaggcgaag gggtgtttat tgcaggtggg gccggtgtaa cgccgtttat ttccatcttc
      601 aagtaccttc agtcaaaaaa caagattggc aataacaaac tcatatttgc caataagaca
      661 aaagcggata ttatattgga aaaagaattc aatggcttgc tcggtgagaa ttttatcaat
      721 attttatcca acgaaaaagt tgaaggattt gcctatggac aaattaccga agactttctg
      781 aaagcatatg tcaatgactc tatcagacat gtatatctgt gtgggcctcc gcccatgatg
      841 gacgctgtgc tgaaacaatt atctgccttg ggtatagatg aaactataat cattgtagaa
      901 gaagtttaaa gttcaggatt tactcaacca ttcaaaaaca cgactatatg cgctattttg
      961 gaaagaacat caagataatt gtaaacaatc taatgataag ttacacggat gccggtccgg
     1021 atgatgcccc ggttattatt tttattcatg gttttccact caataaatcg atgtggaata
     1081 aacagattga agctttaaag gagaattacc gtgtgattgc atacgatatc cgcggacatg
     1141 gcgattctga aatggaaagt gaacctttct ctatcgacct ttttgtaaaa gatctgatta
     1201 gctttatgga tgtactgaaa attgacaagg cttcactttg tggcttgtcg atgggtggtt
     1261 acatagcttt gaaagccatt aaacgaaatc cattgcgttt cgaatcgctg gtattagccg
     1321 acacaacctg cattgccgac cagcctgaaa ctattgtaaa acgaaaaaat gctattaaaa
     1381 gcattaagga agaaggtgtg gttctgtatg ccgaagagag cgtgaaaagt ctttttgcac
     1441 cggagtcatt gccacgtaaa ttagtcgaaa ttgcggcggt aaaagaaatg attatatcta
     1501 cccaggatga gtctatttgc cagactttac gtgcgttaag cgttcgtgaa gaaacatgca
     1561 gttttctgtc atctataaaa ataccggtgc ttgttttggt tggtgagtat gacaaaatca
     1621 caccaccttt tgcagctgcg tttattcata aaaacattgc tggttccaag atgtttatta
     1681 tagaccatgc cggtcattta agcaatttgg aaaatccaga tgcttttaat gatagattaa
     1741 atgctttttt ttcaactgtt tatttaaaac ctgaaatagt agagcaggaa atatacaatt
     1801 catttgtaaa aagaatggca aaacagttga atatattttg gacttctata tggatttgat
     1861 attgcaaaga aaatagcaga tgaagcgtac ccacaatgga tcataaaaaa taaaaaatga
     1921 ataaaatgaa taaaaataca gataaaacaa gctctgcgat agcaagagcg gaatatatag
     1981 aagttgaacc aaatgtacga cttcatgtaa cagatgcggg cgatggaaaa gttatcgtac
     2041 tcataccggg ctggccgcta agcgacgaaa tgtacgaata tcaatacaac gatttgataa
     2101 ataataattt ccgggttatt ggcattacct tgcgtggttt tggcaaatcg gataaacctt
     2161 acggtgcata cagttatgat gttcatgcct tggatattaa acgggttttg gaccatctgg
     2221 atatcaaaga tgctaccttg tgtggtttct
//
LOCUS       DATDNM010000883         2420 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1493151, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000883 DATDNM010000000
VERSION     DATDNM010000883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2420
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1493151"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..1121
                     /locus_tag="VI413_14660"
     CDS             150..1121
                     /locus_tag="VI413_14660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016267872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HEY6915916.1"
                     /translation="MKKTVIALLCIFGAALVSAQEVTCDSAFQSNGNPVIRYKYTADP
                     GAMVYKNKFYLYTGHDVCPKNQERYVMNDWCVFSSDDMKTWTEHPTPLRAKDFAWASG
                     DAWASQVIERNGKFYWYVAVQHKSIHGKAIGVAVSDSPTGPFKDAKGSAIITNDLTTQ
                     YTKISWDDIDPTVYIDDDKQAYLFWGNTQCYYVKLKENMIDTVGPIVAVQNLPKYTEA
                     PWIHKNKGWYYLSYASEFPEKIVYAMSKKITGPWEYKGILNELAGNSNTNHQAIVEFK
                     GKWYFVYHNGGADQGGSSFHRSVCIDRLYYNKDGSLRRVLMTTEGVN"
     gene            complement(1203..2039)
                     /gene="pyrF"
                     /locus_tag="VI413_14665"
     CDS             complement(1203..2039)
                     /gene="pyrF"
                     /locus_tag="VI413_14665"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013619270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEY6915917.1"
                     /translation="MTKQELFENIQRKKSFLCVGLDTDVNKIPEHLFDESEDAIFEFN
                     KAIIDATADLCVAYKPNLAFYESLGLEGWEVLERTVDYIRENYPDQFIIADAKRGDIG
                     NTSAMYARTFFGNMEFDSVTVAPYMGEDSVTPFLTYEGKWVTLLALTSNKGAYDFQFM
                     KDEETGERLFEKVLKASSKWGTDENLMYVVGATKAEMLTDIRTIVPEHFLLVPGVGAQ
                     GGSLQEVAKYGMNSTCGLLVNSSRQIIYASSEKDYAQAARIETEKVQKEMEELLNQAG
                     LI"
     gene            complement(2124..>2420)
                     /locus_tag="VI413_14670"
     CDS             complement(2124..>2420)
                     /locus_tag="VI413_14670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005854384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor-like protein"
                     /protein_id="HEY6915918.1"
                     /translation="KSQHKNKAKAMNELRSRLYAIEHQKYLDEIGSKRKTMVSTGDRS
                     AKIRTYNYPQGRITDHRINFTIYNLSAFMSGDIQGVIDQLIVAENAERLKESEL"
BASE COUNT          670 a          495 c          506 g          749 t
ORIGIN      
        1 taccgttggt ttgcaaaccc cgaacgtgca accaaatcac gggacaattt cttctatttg
       61 ttggacaatc ctccaatttt acaaattagc ttttgataaa tgtctgtttt aggctacctt
      121 tgaagcttaa aacacgttat aaattcaata tgaaaaaaac agttattgct ttactctgca
      181 tttttggtgc tgctttggtt tcagcgcagg aagtaacctg cgacagtgct ttccagtcga
      241 atggaaatcc cgttatccgt tataagtaca ctgccgatcc gggggctatg gtgtacaaaa
      301 acaaattcta cctgtatacc ggccatgatg tttgtccgaa gaatcaggaa cgttatgtga
      361 tgaatgactg gtgtgttttt tcgtcggacg atatgaaaac atggacggaa catcctacac
      421 ccctgcgtgc aaaggatttt gcatgggcca gtggagatgc ctgggcttca caagtgattg
      481 agcgaaacgg aaaattctat tggtacgttg cggtccaaca taaatcaatt catggaaaag
      541 ctattggcgt agctgtttcc gatagtccta ccggaccatt taaagatgcc aaaggttcag
      601 ctattatcac caatgatttg accacccaat acactaaaat cagttgggat gatattgacc
      661 ctaccgtgta cattgatgat gataagcaag cctatttgtt ttggggaaat acacaatgtt
      721 attatgtgaa actaaaggaa aatatgattg ataccgttgg accaatcgtt gccgttcaaa
      781 acttgccaaa atacaccgaa gcgccatgga ttcataaaaa taaaggttgg tattatctgt
      841 cgtatgcttc agaatttcct gaaaaaatag tgtatgccat gagtaaaaag attaccggac
      901 cgtgggagta taaaggcatt ctgaacgagc ttgccgggaa ttcaaataca aatcatcagg
      961 ccattgtgga gtttaaaggc aaatggtatt ttgtgtatca caacggtggt gccgatcagg
     1021 gaggaagcag ttttcaccgt tctgtatgta ttgacagact gtattacaat aaagatggct
     1081 cacttagacg tgttttaatg actacggagg gggtgaatta aacgctgaaa tgtgattata
     1141 caaaaaagct cttaatcctt gtcgattaag agctttttgt ttctttatta agttggtcag
     1201 aattaaatca acccagcctg attcaacaat tcttccattt ctttctgcac tttttctgtt
     1261 tcaattcgtg cggcttgtgc gtaatctttt tcagaagaag cgtagataat ctggcgtgaa
     1321 gaatttacca gtaaaccgca cgtgctgttc ataccatatt tagccacttc ctgcaagctt
     1381 ccaccctggg caccaacacc aggcaccaac aggaaatgtt caggaacgat tgtgcggata
     1441 tcagtcagca tttcggcttt ggtagcacct accacataca taaggttttc gtcggttccc
     1501 catttagaag atgctttcaa cactttttcg aacaagcgtt ctccggtttc ttcgtctttc
     1561 ataaactgga aatcgtaagc gcctttattt gaagtcaaag cgagcagggt tacccatttg
     1621 ccttcataag tcaggaatgg agttaccgaa tcttcaccca tatagggtgc cactgttacc
     1681 gagtcgaatt ccatgttgcc gaagaaggta cgggcataca tagctgatgt attgccaata
     1741 tcaccacgtt tggcatctgc aatgataaat tggtccgggt agttctcgcg gatataatcc
     1801 acggtgcgtt ccagcacttc ccaaccttca aggccaagac tttcgtaaaa agccaggttt
     1861 ggtttgtaag ctacacaaag atcagcggta gcgtcaataa tggctttgtt gaactcgaaa
     1921 atggcgtctt ccgattcgtc aaacaaatgt tccggaattt tatttacgtc agtgtccagt
     1981 cccacgcaaa gaaatgattt cttgcgttgt atgttttcaa ataattcttg tttagtcatc
     2041 tttctattta ctatttaatc atttactatt taccattttg tggttattct caactttaat
     2101 taccacatta tcaaatcatc acattatagt tcactttcct tcagtcgttc cgcattttcg
     2161 gccacaatca gttggtcaat tacgccttgt atatcgccac tcataaaggc cgacaggttg
     2221 tagatggtga agttgatgcg gtggtcggta attcgtccct gcgggtaatt gtaggtgcgg
     2281 attttagccg aacggtcgcc tgtagaaacc atggttttac gtttcgaacc aatttcgtcg
     2341 aggtattttt gatgttctat agcgtacaaa cgcgaacgaa gttcattcat tgcttttgcc
     2401 ttgttcttat gctgcgattt
//
LOCUS       DATDNM010000884         3341 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_851191, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000884 DATDNM010000000
VERSION     DATDNM010000884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3341
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_851191"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..1803
                     /locus_tag="VI413_14675"
     CDS             166..1803
                     /locus_tag="VI413_14675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006798597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HEY6915919.1"
                     /translation="MKRQLIYALCLLMSAGTSFAQKIRPTKNVIVMIPDGTSTSVLSA
                     SRWMKTYRSQGTTLNVDPYMCGTVTTFSSNAPIGDSAPTTSCYMTGTAMQAGNVSMYP
                     VPDPGNDLIKLNPDSAYQPLATILEAMQIEQKKAAGLVVTCEFPHATPADCSSHTYDR
                     GNYKVIAPQMAFNNLEVMFGGGNAFVSETMKQHFKNNGTALFQNDKQALLNFRGEKVW
                     ALFGNNELPYDIDRDTTAVPSLAQMTGKALEVLGKNKNGFFLMVEGSKVDWAAHANDP
                     IAMMSEFLAFDKAVGIALEYAKHAGNTTVIVLPDHGNSGFSIGRNNMKKGYTKMTLTD
                     LFGSVSKYQRTAEGMEKILINTKPEDMKDTFKQYTGIDLTDDEVKLLLSSKNYKAENY
                     MEVSHSQNMTHYITTFMNDRSTFGFTSGGHTGEEVFLAVYHPKGDRLTGNIRNKEVNS
                     YLYKVAGLKKPLNELTSDIYAQHTAVFAGMDYSIAAEKDKAPTLLVKKGSSTLEVQAY
                     SSVARLNGIPFDMGSVAVYVDKNNTFYLPKNLAGKLK"
     gene            complement(1963..2520)
                     /locus_tag="VI413_14680"
     CDS             complement(1963..2520)
                     /locus_tag="VI413_14680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915920.1"
                     /translation="MKRIITVSLFAFMVVSVVAKEQQNLSLNISKNSLTRIKVFEGKL
                     IAYQIEFQLKNESNDPILFWNMNCNWSSQFIFTNESTYILFSCKSNAPQTYLILPQTI
                     IKYAGILVSPTPLTQYEMKNLQVGFIYCDALKFTYEDYLNLRQEKLDISHSSYVRKPL
                     IIWNIGIENYIRSPLPHDYIAWELL"
     gene            complement(2765..3136)
                     /locus_tag="VI413_14685"
     CDS             complement(2765..3136)
                     /locus_tag="VI413_14685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915921.1"
                     /translation="MKIYVVFLLLLASLAVNAQSNAGTSVVVQKVDSVQMDRLITIEN
                     NLTSFHHANRTSQFFIFAGSALTVTGALLSSSSSEPNVLPLFGVISSLIGGVIYLDSY
                     KYLNINKNKKKVATSIKNDFY"
BASE COUNT         1072 a          734 c          624 g          911 t
ORIGIN      
        1 aatagtacaa taaatttatc acaaaagcag gatggttgag atttctcagt catcctgctt
       61 agttaatcgg aggaaattca acccggaaca tcttgttctg ccaaaataat aaattcttac
      121 ctttgccggg cttaaagaat aataattacc caatactttt ataaaatgaa acgacaactg
      181 atttatgctc tttgcctgtt gatgtcagcc ggaacaagct ttgctcaaaa aataagacca
      241 accaaaaacg taattgtgat gattcccgat ggtacttcca ccagcgtatt atcggcatct
      301 cgatggatga aaacctacag aagccagggc accactctca acgtcgaccc gtatatgtgc
      361 ggaacggtaa ccaccttctc atccaacgct cccattggcg actccgctcc taccacttcg
      421 tgctacatga ccggcactgc catgcaagcc gggaatgttt ccatgtatcc ggtacctgat
      481 ccgggcaacg atttgattaa gcttaacccc gatagcgcct accaaccgtt ggcaacaata
      541 ctcgaagcca tgcagataga acagaaaaaa gctgccggac tggtggttac ctgcgagttt
      601 ccacatgcca cacctgccga ttgctcgtcg catacctacg accggggaaa ctacaaagtc
      661 attgctccgc agatggcatt caacaacctg gaagtgatgt tcggtggtgg aaatgcattt
      721 gtttcagaaa caatgaaaca gcatttcaaa aacaacggaa ctgcgctttt ccagaacgat
      781 aaacaagcat tgctcaactt caggggagaa aaagtgtggg ctttattcgg aaacaacgaa
      841 ttgccttacg atatcgaccg cgacacaact gccgttccct cattggcaca aatgaccgga
      901 aaagccctcg aagtgctcgg aaaaaataag aacggcttct tcctaatggt ggaaggcagt
      961 aaggtggact gggcagccca tgccaacgac ccgatagcca tgatgagcga atttctggcc
     1021 ttcgacaaag ccgtgggaat agcgttggaa tatgccaaac acgcaggcaa caccacggtg
     1081 attgtattgc ccgaccacgg aaacagcggt ttctccatcg ggcgaaacaa catgaaaaaa
     1141 ggctatacca aaatgacgct taccgacctg ttcggatctg tatcgaaata ccaacggacg
     1201 gcagaaggga tggaaaaaat cctgatcaat accaaaccgg aagacatgaa agacactttc
     1261 aaacagtaca cgggcattga tttgacggac gacgaggtta aactgctgct gagttcgaaa
     1321 aactacaaag cggaaaacta catggaagtg agccatagcc agaacatgac ccactatatc
     1381 actacgttta tgaacgaccg cagcacgttc ggattcactt caggcggaca caccggtgaa
     1441 gaagtattcc ttgctgttta tcaccccaaa ggcgaccgcc tgacaggcaa tatccgcaac
     1501 aaagaagtga acagttacct gtataaagtt gccggcctta aaaagccttt aaacgaactt
     1561 acaagtgata tatacgcgca acacactgct gtatttgccg gaatggacta cagcatagct
     1621 gctgaaaaag acaaagcccc aacgctgctc gtaaagaaag gtagctccac cctcgaagta
     1681 caggcctata gctcggtagc caggctgaat ggcattccgt tcgatatggg atcggtagca
     1741 gtgtatgtcg acaaaaacaa cacgttttat ttgccgaaaa atctggccgg gaaactgaaa
     1801 taaacatact attacaagaa aagcagaggc gattactggt ttagtaatcg cctctgcttt
     1861 gttttatctt cttgttttct gcgacctgtg ctattcaata agaaactttc ttctcttttt
     1921 cgtattgaca cggttcacag aaccgcgcca gcgtggcaat acctataata actcccatgc
     1981 tatataatcg tgcgggagcg gtgacctgat ataattttca attccaatat tccagataat
     2041 caaaggtttt ctgacatatg aagaatgact tatatctaat ttttcttgcc ttaaattcaa
     2101 ataatcttca taagtgaatt ttaatgcatc acaatatata aaacctactt gcaaattctt
     2161 catttcgtac tgagttagcg gggttggaga tacaagtata cctgcatact ttataatcgt
     2221 ttgaggaagt ataaggtatg tttgaggagc attactttta cacgaaaata agatgtatgt
     2281 actttcattc gtaaaaatga attgcgaaga ccagttacaa ttcatattcc aaaaaaggat
     2341 aggatcatta ctctcatttt ttaattgaaa ttcaatctga taagcaatta acttcccttc
     2401 gaaaactttg attcgtgtca gagaattttt tgagatattc aaacttaaat tttgctgttc
     2461 ttttgctaca actgacacta ccataaaggc aaataaagat actgttatta ttcttttcat
     2521 ttatagtcct ttgttttaca tgatcattca aaccttcctc attcaccata gtttccacca
     2581 cccgatttgg tgtacatctt ttgttttaca cctaccaggt tttaaaaacc tggtaggtgt
     2641 aatctgcatc tttactttac cgtcacactg ctagcgcagg tctgcgacca ttgcaattca
     2701 aaaagaaagt ttcttccctt tttcgtattg acacggttca cagaaccgcg ccagcgtgtg
     2761 attttcaata aaaatcattt ttaattgaag tagctacctt ctttttattt ttatttatat
     2821 tcagatactt atagctatca aggtaaataa cccctccaat taatgaactt ataactccaa
     2881 aaagcggaag tacattaggc tcagaagatg aggaagaaag caatgcacct gttactgtaa
     2941 gcgcagagcc tgcaaaaata aaaaactgac tagtcctgtt tgcatggtga aatgatgtca
     3001 gattattctc gatcgtaatc aatctgtcca tttgaacact atcaactttc tgaacgacta
     3061 cacttgtacc cgcattcgat tgcgcattaa cagccaacga agccaacaaa agtaaaaata
     3121 ctacatagat tttcatatac atttaatttt ttagaattga attgcaaaga tatgaaaatt
     3181 ttaaataaaa ttgagtaggt gaaaaggata cccgaccatt ccttcccctt tactaattta
     3241 attaatgaca tatccggctc gacagacgga ttataatttt caaactcttt aatcatctta
     3301 atccaaagta ttacattaat agtaattaaa tatgaaaaca a
//
LOCUS       DATDNM010000885         2058 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1919678, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000885 DATDNM010000000
VERSION     DATDNM010000885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1919678"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..894)
                     /gene="lpxC"
                     /locus_tag="VI413_14690"
     CDS             complement(<1..894)
                     /gene="lpxC"
                     /locus_tag="VI413_14690"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008759880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEY6915922.1"
                     /translation="MSNQSTIKQAFTLTGKGLHSGLEITLTFLPAPENHGVKIKRIDL
                     PEQPVMDAVAEYVTETTRGTVLKKGEMQVSTVEHALSALYAFGIDNCLLEVNAPEFPI
                     LDGSAKYYVEQIQQIGIEEQKAERDYFIVRKKIEYCIPETGAKITILPDDVFSVDVHI
                     GFDSPVLNNQFASLPSLNDYATEIANARTFVFVREIEQLLKLGLIKGGDLKNAIVIYD
                     KQMSQADFDHLADLMHQPHQDANKLGYLNGGVKFPNEPARHKLLDVIGDLSLIGKPIR
                     GKVIATYPGHKINTDLAKQIRK"
     gene            complement(977..2020)
                     /gene="lpxD"
                     /locus_tag="VI413_14695"
     CDS             complement(977..2020)
                     /gene="lpxD"
                     /locus_tag="VI413_14695"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007478592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEY6915923.1"
                     /translation="MEFTAQQIADFLGGEIQGNPAVKVSDFSKIEEGKPGTLSFLSNP
                     KYSQYIYDSQASIILVNKSFQPEHEVQATLIRVNDAYQALATLLSLVDQSKPKKTGVS
                     PLAYISASAEIGENVYIAPFVYIGEKVIIGKNSMIYAHVNIEDGTKVGENVVLNSGVK
                     VYYNCVIGANCILHSGCVIGSDGFGFAPTGDGSYKKIPQMGNVVLENDVEIGANTVVD
                     RATLGSTIIRKGVKIDNLVQIAHNVEVGMNTVIAAQTGISGSTKLGKQCTLAGQVGIA
                     GHLQIADGTIFGAQTGVPNSVKVPNQVLQGYPAVPIMTFHKAAIVHKNLPELQKLIYA
                     MQKRIDELEKKLM"
BASE COUNT          541 a          444 c          416 g          657 t
ORIGIN      
        1 tttacgaatc tgtttggcca aatcggtgtt gattttatgt cccgggtaag tggcaattac
       61 ttttccacgg atgggcttgc cgataagcga caaatcgcca attacatcca gcagtttgtg
      121 gcgggcaggt tcgtttggaa atttcacgcc cccattcagg tatcccagtt tgttggcatc
      181 ttggtgtggt tggtgcatta aatcagccaa atgatcaaaa tcagcttgcg acatttgttt
      241 gtcgtaaata actatcgcat ttttcaggtc accaccttta atcagaccca atttcagcaa
      301 ttgctcaatt tcacgaacga aaacaaatgt gcgggcattt gcaatttcgg tagcataatc
      361 gttcaacgac ggaaggcttg caaattgatt gttcagtacg ggtgagtcaa agccgatatg
      421 tacatccacg ctgaaaacat catcaggcag aatggtaatt ttggctcctg tttcgggtat
      481 gcagtattct atttttttgc gaacgataaa gtaatctctt tcggcttttt gttcttcaat
      541 tcctatttgt tgaatctgct ctacgtaata ctttgcgctt ccatccaata tagggaactc
      601 cggtgcattt acttccaata aacagttgtc aattccaaaa gcataaagtg ctgatagtgc
      661 gtgttctact gtgctaacct gcatttcgcc ctttttcaat actgttccgc gggttgtttc
      721 ggtaacgtac tcggccacag cgtccattac aggttgttcg ggtaagtcaa tccgtttgat
      781 ttttacaccg tgattttcgg gagccggaag aaaagttaat gtgatttcca aaccggagtg
      841 taaacctttt ccggttagcg taaaggcttg tttgattgta ctttgattcg acattctttt
      901 taatttccaa gttacaggta aaatgctgcc tgcaagatgt ttttttgaat aaaatattga
      961 taattaaaag ctgaaattac atcagtttct tttctaattc gtctatccgt ttttgcatag
     1021 cgtaaatcaa tttctgaagc tcaggaagat ttttatgtac tatggctgct ttatgaaaag
     1081 tcataatcgg aacggcagga taaccctgca gaacctggtt tggaactttt acagaattcg
     1141 gaacgccggt ttgtgcacca aaaatggtgc catcggcaat ttgtaagtgg cctgctatac
     1201 caacctgtcc ggccagtgtg cattgtttgc ctagtttggt cgagcctgaa atacctgttt
     1261 gcgctgcaat tacggtattc attcctactt ccacattatg ggcaatttgt accaggttgt
     1321 ctatttttac acctttgcgg ataatagtac tccccagagt agcccgatcc acaaccgtat
     1381 ttgcaccaat ttcaacatca ttctccagta ctacatttcc catttgaggg attttcttgt
     1441 acgaaccatc accggtgggg gcaaacccga atccgtcgga gccgattacg caaccggaat
     1501 gtaatatgca gttagcgcca atgacacagt tgtaatatac ttttacaccc gagttcagaa
     1561 ctacattttc gcccactttg gtaccatctt cgatgtttac atgggcatag atcattgaat
     1621 tttttccgat aattaccttt tctccgatat aaacgaacgg ggctatatac acgttttcgc
     1681 caatttctgc tgaagctgaa atatatgcta acggggaaac tccggttttc ttcggtttgg
     1741 actgatcaac caacgaaagc aaagtggcta aggcctggta agcatcattc acacggataa
     1801 gcgtagcctg aacttcatgc tcgggctgga aacttttgtt gacaagtata atgctcgcct
     1861 ggctatcgta aatatactgg ctgtattttg ggttcgacaa aaaactcaac gtacccggct
     1921 tcccctcttc aattttagag aaatcactaa cctttactgc gggattacct tgtatctcac
     1981 cgcctaagaa atctgcaatt tgttgagctg taaactccat ataaaaaaat ttggttgcaa
     2041 aagtactaaa ctatttcc
//
LOCUS       DATDNM010000886         2504 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1493615, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000886 DATDNM010000000
VERSION     DATDNM010000886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1493615"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1666
                     /locus_tag="VI413_14700"
     CDS             <1..1666
                     /locus_tag="VI413_14700"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6915924.1"
                     /translation="NKILESQNIAINKQKEELSEQRDQLIVLSKNLEDATQAKLVFFT
                     NISHEFRTPLTLILGPLDSLMQNENLSANGKRLIQLMRKNVHVLLKLIDQIIDFRKYE
                     NGKMQMFFTLTDLKSFVSEICDSFIELGKKKHIHFYFATSDEDYTLWFDSDKMEKICY
                     NLLSNAFKFTPENGRIDVHLARMLVDGEDYAQITVSDNGPGIPDHHIHSIFERFYKVD
                     DRATGSGIGLHLTKMLVELHNGEIKVESSEGKGTKFSVLIPFKQKEINVVEQYPAINS
                     IIDREEDMMILDTEEDMDENINLKTEKPLVLIVEDNVDVRVYIKSLLNENFEIIEAAN
                     GQAGLLKAMKFVPELIISDVQMDVMDGFELCKQIKENLSTSHIPVILLTAYALDEQRA
                     MGFESGADAYIPKPFNESLLKIRVRKLIENRDRIKNYFQKNLTFGERKENVAEIDKTF
                     INKFRKLIEERLIDSDLNVDEIGKSLGLSRVQLYRKIKSLTNYAPNELVRIIRLKASE
                     QLLIATEKSVSEVAYDTGFSSPSYFTKCFKEYFNESPTDYVKRIKQ"
     gene            1900..2328
                     /locus_tag="VI413_14705"
     CDS             1900..2328
                     /locus_tag="VI413_14705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915925.1"
                     /translation="MGKREELRIFRKPSIEYLKKMYNKSVSYIFDKNSWTSTEPDTYG
                     ESRILLHTRKSIERLGKELKIFKAPSIVGIEIIYYKSMAFVFDKYRREHQMALVSEEN
                     YLLRDLSTSDSCTNDKELKIFKLPTIDKLEMLYYKSIGKL"
BASE COUNT          816 a          429 c          555 g          704 t
ORIGIN      
        1 caataagata ctggaatcac aaaacattgc tatcaataag caaaaggaag aactctccga
       61 acaacgcgac cagttaattg tcctgtcaaa gaacctggaa gatgccacgc aggcaaagct
      121 ggtatttttt actaatatct cgcatgagtt ccgtacgccg cttaccctta ttttaggtcc
      181 gttagacagt ttaatgcaga atgaaaatct gagcgccaat ggaaaaaggc tgattcaact
      241 gatgcgcaaa aacgtgcatg tattgttgaa attaatcgac cagattattg atttccgcaa
      301 gtatgaaaat ggcaaaatgc agatgttttt tacattgacc gacctgaaaa gctttgtgtc
      361 ggaaatttgc gactcattta ttgagttggg gaagaaaaag catatccatt tctactttgc
      421 aacttccgat gaagattata ctttgtggtt cgattcggat aaaatggaaa aaatctgcta
      481 taaccttctt tccaatgctt ttaaatttac tcccgaaaat gggcggattg atgtgcattt
      541 ggccagaatg ctggtggatg gtgaagatta tgcacaaatc actgtttcag acaatggacc
      601 aggcatcccc gatcatcata ttcacagcat tttcgaacgg ttttacaagg tcgacgacag
      661 ggctacgggc tcaggcatag ggttacatct taccaaaatg cttgttgaat tgcataacgg
      721 cgaaatcaaa gtagaaagtt cggaaggaaa agggactaaa ttcagcgtgc ttattccgtt
      781 taagcagaag gaaatcaatg ttgttgagca atacccggcc ataaactcta ttatcgaccg
      841 cgaagaagat atgatgatat tggataccga agaggatatg gacgaaaata tcaatctgaa
      901 aactgaaaag ccgttggttt tgattgtgga agacaatgtg gatgtgcggg tttatataaa
      961 aagtttgctg aacgaaaact ttgaaataat tgaagctgca aacggacagg cagggctgtt
     1021 gaaagccatg aaatttgttc cggagcttat tatcagcgat gttcaaatgg acgtgatgga
     1081 tggttttgag ctttgcaagc agattaaaga gaatctttcc accagccaca ttccggtaat
     1141 tttgcttaca gcttatgcgt tggacgagca acgtgccatg ggatttgaga gtggggcaga
     1201 tgcctatatc ccaaaacctt tcaacgagag tctgttgaag attagggtgc gtaaactgat
     1261 tgagaaccgc gataggataa agaattattt ccaaaagaac ctgacttttg gcgagcgaaa
     1321 ggaaaacgtg gccgagattg ataaaacctt tatcaataaa ttcagaaagc tcattgaaga
     1381 gcggctgatt gacagcgacc tgaatgttga cgaaattggc aagagcctgg ggttgtcgcg
     1441 cgtgcaattg taccggaaaa taaaatcgct tacaaactac gcacccaacg agctggtgcg
     1501 cataatccga cttaaagcgt cggaacaact cttaattgct actgaaaagt cggtttccga
     1561 ggttgcctac gacaccggtt tttcgtcgcc ctcttatttt accaagtgct ttaaagagta
     1621 ttttaatgaa agtcctaccg attatgtgaa acggataaag caataaacac aagctctgaa
     1681 tcgttatatt catgactttc ccttttggtt ggttcatgaa gaagatgata gttgtagatt
     1741 tatttccgga gattcataat ctggcatgat taatgctgaa aatcaataaa tgaaattgac
     1801 tgtttttggc tcaaaaaaag gcattttgtg caaaacaatc ttccgttttt tttcgttgaa
     1861 actatagtag acaagctact aaaattaaaa gtgaataaga tgggtaaaag agaagaatta
     1921 aggatattca ggaagccgag tattgaatac ctgaaaaaga tgtacaataa aagtgtatct
     1981 tatatttttg ataaaaacag ttggacttcc acagagcccg atacgtatgg cgaatcgagg
     2041 atattattgc acacacggaa gtcaattgag cggttgggca aggaattgaa gattttcaag
     2101 gcgccgagta ttgtgggtat agaaataatc tattataaaa gcatggcttt tgtttttgat
     2161 aaatatcgtc gtgaacacca aatggctttg gtttcagaag aaaactatct tttgagggat
     2221 ttgtcgacga gtgattcgtg tacgaatgat aaggaattga aaattttcaa attgccgact
     2281 atcgataaac ttgagatgtt atattacaaa agcattggta aattataaga taagatgaca
     2341 cgaaccgcaa atgataaatg agaaactaca gggaaagtac cttgtagttt ttttttagcc
     2401 ccttttcaac ttataccagc ttcgccttcg aaagcaaaaa gctccccggc aaaatacact
     2461 gccggggagc ttttttattc tctgaaaata ttcgttgggg agtt
//
LOCUS       DATDNM010000887         3722 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_958343, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000887 DATDNM010000000
VERSION     DATDNM010000887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3722
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_958343"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1260)
                     /locus_tag="VI413_14710"
     CDS             complement(<1..1260)
                     /locus_tag="VI413_14710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915926.1"
                     /translation="MKRFTFISMLVLLIPLAGISQNQNTSLDDVYFKPGDATQIKKTQ
                     VNKQKPTYKNGAKEIVYIEREIPTVSSDTTILAQTNDSILADSLNTGYYLNGFKGTKS
                     DLEYAERIRRFHSPKYTIFISDPNYNDIYYLNDNDWNVYIDGSYAYVTPTWTNPYWWN
                     YNYGPMYGGWGYNPYSPYYGYGGWNNYPWGYGGYYGYGGFGGYYGYGGYYGGYYGYGY
                     PYCGYGDYYGYGDYYGYGGYGGWYGHSVTSRNPAHNEGNRRDANNTNNPNGRRYGDTN
                     NASQTIGGSSFNSVSRNPYTVVSGTGSRDKNSNTVINGTSLRPTVATTSTFQSNSRPN
                     QGSTGNGIGLVRTGTRNTTGLYQNYNNSNTTQTRTTSGVSTTINTRPRTSTVTNNNLP
                     TNNSGITRGSYSSGVNTQGYSSGGSRTG"
     gene            1526..2365
                     /gene="prmA"
                     /locus_tag="VI413_14715"
     CDS             1526..2365
                     /gene="prmA"
                     /locus_tag="VI413_14715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008276 - protein methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006479 - protein methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEY6915927.1"
                     /translation="MNYIEVHFFIEPYEEYISDVLAEELGEIGFESFVPTEESLDAYI
                     SESLFDESKLKTLLTEFPFEASIDYKVTQIESKNWNEEWEKNFFEPIVIGNDCVIHSS
                     FHKNVPKAKYDIVIDPKMAFGTGHHETTSLVIGRLLDMELEGKSLLDMGCGTAVLAIL
                     AAMRGAKDIVAIDIDTWCTENSIENIAMNNIKGIDVKLGGAELLTGLHFDIILANINR
                     NILLSDMEQYAACLSSGGELYMSGFYKEDIPLIEAEANNNGLKLIDYREKNNWVAVKT
                     VKE"
     gene            complement(2448..2993)
                     /locus_tag="VI413_14720"
     CDS             complement(2448..2993)
                     /locus_tag="VI413_14720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEY6915928.1"
                     /translation="MKEEIIIAGFGGQGVLSMGKILAYSGLMQGQEVSWMPSYGPEQR
                     GGTANVTVILSDERISSPVLNSYDTAIVLNQPSLDRFESLVKPGGTLIFDGNGLHKFP
                     TRTDIHIYRIDAIEYAYANDTAKTLNMIILGGLLKVRPIVKIENVLKGLKKSLPERHH
                     HLLSVNEKAIHIGMDLIQKLN"
     gene            complement(3034..>3722)
                     /locus_tag="VI413_14725"
     CDS             complement(3034..>3722)
                     /locus_tag="VI413_14725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013815155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEY6915929.1"
                     /translation="HYCPGCSHGVVHKIIAEIIGDMDMQEKTIAIAPVGCAVFAYKYL
                     DVDWQQAAHGRAPAVATAVKRLLPDRLVFTYQGDGDLAAIGTAETIHACNRGENIAII
                     FINNGIYGMTGGQMAPTTLQGMKSSTSPNGRTVPLNGHPLDITKLLAQLDGTCYVTRQ
                     AVHTVAGVRKTKKAIQKAFENSMLGKGTSIVEVVSTCNSGWKMTPEAANDWMVENMFP
                     AYPLGDLKDL"
BASE COUNT         1051 a          701 c          737 g         1233 t
ORIGIN      
        1 tcctgtgcgt gagccacctg aggaatatcc ctgagtgtta acacccgatg aataactacc
       61 tcttgtgatt cctgaattat tagttggtaa attgttgttt gtgacagttg aagttcgtgg
      121 gcgtgtattt atcgttgttg atactcctga agttgttctt gtttgggtcg tattggagtt
      181 gttgtaattt tgatataagc cagttgtatt tcttgttccg gttcttacca atcctattcc
      241 atttccagtg ctaccttggt tcggtcttga attggattgg aatgttgatg tcgtcgcaac
      301 tgtaggacgt aaagaggttc cgttaattac tgtatttgag tttttgtcac gcgagcctgt
      361 gccgctcaca acagtatatg ggttgcgtga gactgaattg aagctacttc caccgatagt
      421 ttgcgatgcg ttgtttgtat cgccataacg tctgccgtta gggttatttg tgttgttagc
      481 atctcgtctg tttccttcgt tatgtgcagg gtttctgctt gttacagaat gaccgtacca
      541 gccaccatat ccaccatacc cataataatc gccatatcca taataatcgc cgtaaccgca
      601 gtatgggtag ccatatccgt aatatcctcc gtaatatcct ccatacccat aatatccacc
      661 gaagccacca tatccataat aacctccata tccccatggg tagttgttcc agccaccata
      721 cccgtagtaa ggtgagtaag ggttatatcc ccagcctcca tacattggac cgtaattgta
      781 attccaccaa tatgggtttg tccatgttgg agttacataa gcataagatc catcaatgta
      841 tacattccaa tcattatcgt tcagataata tatgtcgttg tagtttggat cgctaataaa
      901 aatggtgtat ttgggactgt gaaaacgacg gattcgttct gcatattcca aatcggattt
      961 tgtccctttg aatccattca gataataacc tgtgtttaga ctgtctgcta aaatactgtc
     1021 atttgtctga gccaatatgg tagtatcaga acttacagta gggatttcgc gttcaatata
     1081 aacaatttcc ttagctccat ttttataggt aggtttttgt ttgtttacct gcgttttctt
     1141 aatctgagtt gcatctcccg gtttgaaata aacgtcgtcg agtgatgtgt tctgattttg
     1201 actgattcct gctagtggaa tcaataaaac cagcatactg ataaatgtga atcgtttcat
     1261 aataatacct cctattattt agtcaataga gattgttttt gtgttataat aaatcaacaa
     1321 gaatcatgcc attggatact tattttgaat tgattttagc tcttgtaaac agatagcatc
     1381 aaaacgagca taaagtctca aaaaataagt acttttgtat aatgattatt gttttagaca
     1441 aaatagcttg caaattgttt aattaaatat tcaattcatt ttaaattaaa tacagaatta
     1501 actaattatt tattcttata attgtatgaa ctacattgaa gtccattttt ttattgaacc
     1561 ctacgaagag tacatttcag atgtattagc tgaagaattg ggtgaaattg gttttgaaag
     1621 tttcgtgcca acggaagaga gccttgatgc ttatatatcc gaatcgcttt tcgatgagtc
     1681 caaactgaag actttgctga ctgaatttcc gtttgaagcc tctatcgact acaaagttac
     1741 acaaatagaa tcaaaaaact ggaacgaaga atgggaaaag aatttttttg aaccaattgt
     1801 tatcggaaat gattgtgtta tacatagttc atttcataaa aatgttccaa aagcaaagta
     1861 cgatattgtg attgacccta aaatggcttt tggaacgggt catcatgaaa cgacaagttt
     1921 agttattggc cgattgcttg atatggagct tgaaggaaaa tctttgcttg atatgggttg
     1981 cggaacggct gtgttggcta ttctggctgc catgcgcgga gcaaaagata ttgtggctat
     2041 tgatattgat acgtggtgta cagagaattc gattgagaat attgcgatga ataacattaa
     2101 aggaatcgat gtgaaacttg gtggtgccga gttgctaacc ggattacatt ttgatattat
     2161 tctggctaat atcaaccgca atattttgtt atctgatatg gaacagtatg cagcatgttt
     2221 gtctagcggt ggtgaattgt atatgagcgg gttttacaaa gaagatattc ccctgattga
     2281 agcagaagca aataataacg gattgaaatt gattgactac cgcgagaaaa ataattgggt
     2341 agccgttaaa accgtgaaag aatagttaaa cagacagaat caagacaaaa aaacgctgca
     2401 aacctcattg ggatgcagcg tttttttatt tgaaatcagg taattgttta attcaatttc
     2461 tgtatcaaat ccataccaat atgtattgct ttttcgttta cgcttaataa atgatgatgg
     2521 cgttccggca aagatttttt aaggcctttg agcacatttt caatctttac aataggtctt
     2581 actttcagta atccacccag tatgatcata ttcaatgttt tggctgtatc attggcataa
     2641 gcgtattcta tagcatcaat cctgtaaata tgaatgtcgg tgcgtgttgg gaatttgtga
     2701 agcccgtttc cgtcgaaaat gagtgttcca cctggtttta caaggctttc aaaccggtcc
     2761 agcgatggtt gattcaacac gatagcagta tcgtatgaat ttaatacagg agaactgatt
     2821 cgttcgtcgc ttaagattac agttacattt gcagttccac cgcgttgttc tgggccgtat
     2881 gaaggcatcc aacttacttc ctgaccttgc atcaatcctg aataagccag aatttttccc
     2941 attgaaagta caccctgacc gccaaacccg gctataatta tttcttcttt cattctttaa
     3001 attgtaaatt gtaagtaata aaatcgtaaa ctcttaaagg tctttcaaat caccaagcgg
     3061 ataagccggg aacatgtttt caaccatcca atcatttgca gcttccggtg tcattttcca
     3121 acctgaatta caggtggaaa ctacttcaac aatagaagtt cctttgccta gcattgaatt
     3181 ctcaaatgcc ttttgaatag ctttcttcgt tttacgaact ccggccacag tatgcactgc
     3241 ttgtcgggtt acatagcatg ttccatctaa ttgcgccaac aattttgtaa tatcaagcgg
     3301 gtgtccgttt aaaggtacgg tacggccatt tggcgaagtc gatgatttca taccttgtaa
     3361 tgttgttgga gccatttgtc ctccagtcat gccataaata ccattgttaa taaagatgat
     3421 ggcaatattt tcaccccggt tacatgcatg aattgtttcg gcagttccga ttgcggctaa
     3481 gtcaccatct ccctggtagg tgaataccaa tctatctggc aaaagacgtt ttacagcagt
     3541 agctactgcc ggagcacggc cgtgggccgc ttgttgccag tctacatcca ggtatttata
     3601 agcgaaaaca gcgcaaccta ccggtgcgat ggctattgtt ttttcctgca tatccatatc
     3661 gcctataatt tctgcgatta ttttatgtac tacaccatga ctgcaacccg ggcaataatg
     3721 ca
//
LOCUS       DATDNM010000888         7352 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1598817, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000888 DATDNM010000000
VERSION     DATDNM010000888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 7352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7352
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1598817"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1014
                     /locus_tag="VI413_14730"
     CDS             <1..1014
                     /locus_tag="VI413_14730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915930.1"
                     /translation="IIISIVLVACNRTQHKEPKIRFTGYKLPQGVLSFHIDIKIDSVT
                     SLNNLIPKLSTNYELYPTFRGCYIGYNDLMFSIAVHGDSAIQPLMNFYYQTKSYNAKL
                     AALHTLHLIGINCHIAIDDFYFSNMNVRKALFKILAEDDSLQSRVMMLLSRRALASDV
                     PVLMDIMKSSKSDCWGISCGLLKYKLKNIPVVQKVPEELWDKTINLKYSADTKNNARL
                     QKIFKKIKEKYKDCILVEDTLLHYHYEQKITFSGLTFLEASKRKKFGTSDLCDYCVPN
                     YFEYGSNFQYYCKDNKLYFCSAMTSKRLWLEWWKSQTESYKDSLKNSDETIGTYSHRG
                     RKY"
     gene            1176..1793
                     /locus_tag="VI413_14735"
     CDS             1176..1793
                     /locus_tag="VI413_14735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915931.1"
                     /translation="MKNSVKYSKILQIGLLLTFFLPFFPHGCEPKKAEEMSMSDSTQV
                     IIDSASQERSKLILANKQSDSIKTTAIENVSDTKDQSPNIDSDKELTTKISQKSSILK
                     LLLRPNDNYTGIASLIDFFSLVEFGYGLAIAFILWLISLITKLKDFNSIFLLINIIGL
                     AFLSVSHSLNVFNDRRLWGFWVCLIWAVAMIIYDSIILFKRKKNN"
     gene            1932..2108
                     /locus_tag="VI413_14740"
     CDS             1932..2108
                     /locus_tag="VI413_14740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915932.1"
                     /translation="MKKEKNPKVLIPVAAMFLVVGLTFDEMKWLKYIFLIISLVLSII
                     ALQHSFKVKRNKQE"
     gene            2226..2654
                     /locus_tag="VI413_14745"
     CDS             2226..2654
                     /locus_tag="VI413_14745"
                     /inference="COORDINATES: protein motif:HMM:NF024076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3788 family protein"
                     /protein_id="HEY6915933.1"
                     /translation="MAEIILLRDSAIIPTEEVLENALGKKVFAVYEKLIKAITSAEFE
                     LAPEWNYYKDGKAWLCKVIYKKKTVFWLSAWENHIKTSFYFTEKTRTGIFELAIDEKI
                     KQDFDQSKAVGKFSPLVLCIDAPGQLKDLKEIIRYKKALK"
     gene            complement(2782..4569)
                     /locus_tag="VI413_14750"
     CDS             complement(2782..4569)
                     /locus_tag="VI413_14750"
                     /inference="COORDINATES: protein motif:HMM:NF013050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6915934.1"
                     /translation="MLKNHPKGLLVAFFANMGERFGFYTMMAILVLFLQVKFGLSVET
                     AGDYYSWFYFGIYALALIGGILADYSKKYKLVILVGIVVMLTGYAMMAMPGASLNVTL
                     ISLFVIALGNGLFKGNLQAVVGQLYDNEQYGKLRDSAFMIFYMGINVGAFFAPFAATG
                     VRDWWLKTNGFLHDGSIPSLCHQMLEGKLTDTTQFATLANKVSLTGPVTDLNAFATSY
                     LDVFSRGYNYAFGIAAVAMVISLLVYIIFNKHLPDKQVVVAKEPKSKAENKSSLLTLV
                     VALLVGGLVTFLVSLLKDYKTGMAIGLFGTFVTWIIMSSTKEEKARVTSLVLVFFVVI
                     FFWMSFHQNGLTLTVFARDYIVKEVGPFTNLFFTLPSILSFIAGVGGLFLLFGKNKLT
                     NRLIGGAMVISGGALCYYFISGNAAMNSISPEVFQSFNPLFIVFLTPMVMGFFAWLNK
                     IGKEPSTPRKIGIGMIIAAIGFLVVLVGSMSLISPHELNGEAVPDSSRVSPYWLISSY
                     LVLTVAELFLSPMGLSFVSKVAPQRFQGLMQGGWLLATAVGNKLLFVGSFFWEKLDLW
                     QLWLIFIVCCLLSATFIFSIMKRLERVTS"
     gene            complement(4678..>7352)
                     /locus_tag="VI413_14755"
     CDS             complement(4678..>7352)
                     /locus_tag="VI413_14755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005781094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PEP/pyruvate-binding domain-containing protein"
                     /protein_id="HEY6915935.1"
                     /translation="RVKKQFPDIPIVVLTPFSKSVSQRIANEDLSAIDYVFSWLGNSD
                     ILLAIIKLIEDRMNVEEDVNSVGVQVILFVEDSIRWYSSIVPHLYKFVFKQSRSFMTE
                     ALNEHEQMLRMRGRPKILLARSYEEGLSIWEKYKNNMLGVITDVSYMQNGQKNKKAGI
                     NLCREIRNFDKHIPLIVESTEEENHVAADSVKAAFLNKMSKTLLMELREKITNNFGFG
                     DFVFINPETGVEEARVQNLRGLQESIFNVSDESLYYHVSRNNISRWLYSRAMFPLAEF
                     LKNISVDNDVHSDLGKVRQIIFDAIVHYRKVKNRGVVALFQRDRFDQYSNFARIGDGS
                     LGGKGRGLAFIDAMIKRNESLENFANTQIVIPKTVVLCTDNFTEFMEQNKLYPIALSD
                     CSDEEILSHFLKARIPHHLIADLMVFLGAIASPIAVRSSSLLEDSHYQPFAGIYATYM
                     VPFSPNSRTHMLEKVTEAIKAVYASVFYRDSKAYMTATKNIIDEEKMAIVLQEICGNA
                     YEDRFYPSFSGVARSLNYYPIGAERPEDGIASIAMGLGKHIMDGGMSLRFSPAYPNNI
                     LQTSTLELALHETQTFFNALDLKQTHFVPQVDDGFNLLRIPVSEAEKDGTLKFIASTF
                     NPRDNVILQGLYEGGRKIITFANILQHNIFPLADILKEVLHIAQAEMGRPVEIEFAVK
                     LDYSPAKQHVFYLLQIRPIVDSREMVNEDIGSIPEENAIITCNSALGHGITNDIYDIV
                     YVKPEAFSAAKSQLIMTEIDKLNRKLIAENRHYVLVGPGRWGSADPWLGIPVKWSHIS
                     NARLIVESGLSNYRIDPSQGTHFFQNLTSFGVAYFTINPYQNDGTYDTGYLNAQPAVY
                     ESEFIRHVHFENPIIMKVDGRKNRGVVMKPEGMA"
BASE COUNT         2465 a         1507 c         1313 g         2067 t
ORIGIN      
        1 ataatcattt cgatagtttt ggttgcttgc aataggactc aacacaaaga accaaaaatc
       61 aggttcaccg gctataaatt acctcaggga gttttgagct tccatatcga cataaaaatt
      121 gatagtgtta cctcattgaa caatctaatt ccaaaacttt caactaatta cgagctttac
      181 ccaactttca gaggctgcta tattggttac aatgatttaa tgttttcgat agccgttcat
      241 ggtgacagtg caattcagcc actgatgaat ttttattatc aaactaaatc atacaatgca
      301 aaattagctg ctcttcatac tttacattta atcggaataa actgtcatat agcaattgac
      361 gatttctatt tttcaaatat gaatgttcga aaggctctat ttaaaatttt ggcagaagat
      421 gatagtttgc aatctcgtgt tatgatgcta ttatcaaggc gagcgttagc ttcggatgtt
      481 ccggttttga tggacataat gaaatcatca aaatctgact gttggggaat ttcatgtgga
      541 ttgcttaaat ataaattgaa gaatattcct gtagttcaaa aagtaccaga agaattatgg
      601 gataaaacaa tcaatcttaa atactctgct gatactaaga ataatgcaag gttacagaaa
      661 atattcaaaa aaataaaaga aaaatataaa gattgtattt tagtcgaaga tacattgctt
      721 cattatcact atgaacagaa aattactttt tcaggtctta cttttttgga agctagcaaa
      781 agaaaaaaat ttgggacaag tgacttgtgt gattattgcg ttcctaatta ttttgaatat
      841 ggttctaatt ttcaatacta ttgtaaagac aataaattgt atttctgttc agcaatgact
      901 tcgaaacgat tatggctcga atggtggaaa tctcaaacag aatcttataa agattcattg
      961 aaaaatagtg atgagacgat tggaacgtac agtcatagag ggcgtaaata ctaagattaa
     1021 atgtgtaata tgaaagtatt gtttaaaagc gagttgtcgt agaaacaaca aacgaaaaat
     1081 aacaaaacaa acaccgaacc gctaacacac tttgctagcg cagttctgtg aatcgtgcta
     1141 aataatcaaa aacattactt caactataaa atacaatgaa aaacagcgtc aagtattcta
     1201 aaatactaca aatcggatta ttgttgactt ttttcctccc attttttcct catggatgtg
     1261 aaccgaaaaa ggcagaagaa atgtctatgt ccgattctac acaagttatt attgattctg
     1321 catcacaaga aagaagtaaa cttatattgg ccaacaaaca atctgactca ataaaaacaa
     1381 ctgctattga gaatgtatct gatacaaaag atcaatcacc gaatatagat tcagacaagg
     1441 agttgacaac aaaaatttct cagaaatcat ctatattaaa gttactctta aggccaaatg
     1501 acaattatac aggaattgcc agcttaattg atttcttttc gctcgtggaa tttggctatg
     1561 gattggcgat agcattcata ctatggttaa tttcactgat aaccaagcta aaagacttca
     1621 atagcatttt tttattgatc aatattatcg ggcttgcatt cttgtcggta tcacactcgc
     1681 tgaatgtttt caacgacagg agattatggg gattttgggt gtgtttaata tgggctgtcg
     1741 ctatgataat ttatgacagc attattttat ttaaaaggaa gaaaaataat taaaaatgca
     1801 attagtggac tcccccgctc ccacacaatt ttatcgcgca aaaagtaaag atttgtaagt
     1861 ggattgccac atgatgcaat cctgcagaaa cgcactaaac aggagcgtat aaatccagaa
     1921 aacattataa tatgaaaaaa gagaaaaatc ctaaagtact aattcctgtt gcagcaatgt
     1981 ttttagttgt tgggctaaca tttgacgaaa tgaagtggtt aaaatatatt ttcctgatta
     2041 tttcattagt tttaagtata attgcattgc aacactcctt taaagtcaaa aggaacaaac
     2101 aagagtaaaa ccttatactg ataagaagtt agttttataa accgtctgaa ggtcaaactt
     2161 tgaccatttc tgtttaaatc ggcactttca aatttagtat gcaataaaaa ctcaacaaaa
     2221 atattatggc cgagattatc ttattaagag attccgcaat tatccctaca gaggaggttt
     2281 tggaaaatgc acttgggaaa aaggttttcg ccgtttacga aaaacttatt aaagcaataa
     2341 ccagtgctga gtttgaattg gcacccgaat ggaattatta taaagatggg aaagcctggc
     2401 tgtgtaaagt gatttacaaa aagaaaaccg ttttctggct ttcagcctgg gaaaatcaca
     2461 taaagacgag tttctacttt acagaaaaaa cacgtaccgg gatttttgag ttagccatag
     2521 acgaaaaaat aaagcaggat ttcgaccaaa gcaaagctgt tggaaaattc agcccattag
     2581 ttttatgtat tgatgcacct ggccaactga aagatctgaa agaaataata aggtacaaaa
     2641 aagcattgaa ataatcattt attgactcaa cgtgagttca acagaccaaa agacttcgca
     2701 aataacagaa taaaagacat tgtaaaaaaa tgcccggatt agataaatcc gggcatttta
     2761 tattataact caaaactgta cttagcttgt aacccgttcc aatcgtttca taatagagaa
     2821 aatgaacgtt gccgagagta aacagcaaac aataaaaatc agccacaact gccacaaatc
     2881 cagtttttcc caaaagaaac ttcctacaaa caacagttta tttccaacag ccgttgcaag
     2941 caaccaaccg ccttgcatta aaccctggaa gcgttgagga gccactttag aaacaaacga
     3001 taatcccata ggactcagga acaactctgc cacagtcaga accaggtaac tgcttatcaa
     3061 ccagtaaggg cttacccttg aagaatcagg cactgcttca ccgtttaatt catgaggcga
     3121 aatcaggctc attgatccaa caagcactac cagaaatcca atagcagcga taatcatacc
     3181 aataccaatt tttcgcggag ttgaaggttc tttcccaatt ttattgagcc atgcaaaaaa
     3241 tcccataacc attggcgtca gaaaaactat aaacaaggga ttgaacgact ggaaaacttc
     3301 tggtgaaatt gaattcatag ccgcattgcc cgaaataaaa tagtaacaca aagcacctcc
     3361 cgaaataacc atagctccac caatcaggcg gtttgtaagt ttatttttcc cgaataaaag
     3421 aaacaaccct cctaccccgg caataaagga aagaatggaa ggcagtgtaa agaacaggtt
     3481 cgtaaacgga ccaacttctt tcacaatata atcgcgtgca aacacagtca gtgtaaggcc
     3541 gttttggtgg aaggacatcc agaagaaaat aaccacaaaa aacactaata caagggaagt
     3601 aaccctggcc ttttcttctt tggtcgacga catgataatc cacgttacaa aagtaccaaa
     3661 gagtccgata gccatacccg ttttataatc tttcagcaag ctaaccagga atgtaaccag
     3721 tcctccaaca agcaaagcta ccaccaatgt tagaaggctt gatttgttct ccgctttact
     3781 tttcggttct ttagcaacaa ccacttgttt atcgggcaaa tgcttattga aaataatata
     3841 taccaacaac gaaatgacca tagccaccgc tgcaattcca aaagcataat tataccccct
     3901 tgaaaagaca tcaagataag acgttgcaaa ggcatttaaa tctgtaacag gcccagtaag
     3961 gctcacttta tttgccagtg tggcaaactg ggttgtatcg gtcaatttac cttccagcat
     4021 ttgatggcaa agtgaaggga tgcttccatc gtgaaggaaa ccatttgttt tcaaccacca
     4081 atcccttaca ccagttgcag caaaaggagc aaaaaatgca ccgacattga ttcccatgta
     4141 gaaaatcata aaagctgaat cacgcaattt tccgtattgc tcattatcat aaagctgccc
     4201 aacaacagct tgcaggttac ccttaaacaa accatttcca agtgcaatga cgaataaact
     4261 tattaaagta acattcaaac ttgcacccgg catggccatc atggcatatc ctgtaagcat
     4321 gaccacaata ccaaccagaa taaccagttt gtatttcttt gaataatcgg ctaaaattcc
     4381 acctatcagt gccagggcat aaatgccaaa atagaaccaa ctgtaataat ctccggctgt
     4441 ttccactgac agaccgaact taacctgtaa gaacaaaact aatattgcca tcatggtata
     4501 aaaaccaaaa cgttcgccca tattggcaaa aaaagcaact aataatcctt tgggatggtt
     4561 tttcaacata ctttttgatt taatgacccc taacccctaa agggggatta agaacctgat
     4621 ttatatttaa tttatattta attactaatc attattgccc cattaaggaa ttggggttta
     4681 tgccattcct tccggcttca tcaccactcc cctgttcttt cgtccatcca ctttcatgat
     4741 aatgggattt tcaaaatgca catgcctgat aaattccgat tcataaacgg caggttgtgc
     4801 attcaggtag ccggtatcgt acgtcccatc attctgataa ggattaatgg taaaataagc
     4861 cacaccaaac gaagtcagat tttggaaaaa gtgtgttccc tggctcgggt caatacggta
     4921 attcgacaaa cccgattcta caatcaaacg ggcattgctt atgtgcgacc actttacagg
     4981 aattcccagc cacggatcag ccgaacccca acgcccagga ccaaccaaca cataatggcg
     5041 gttttcggca ataagctttc tgttcagctt gtctatttct gtcataataa gctgactctt
     5101 agccgcgctg aaagcctccg gtttcacgta aacaatatcg taaatgtcgt tggtaattcc
     5161 gtgacccaag gcgctgttgc aggttatgat cgcattttct tcgggaatgg aaccaatatc
     5221 ttcgtttacc atttctctgc tatccacaat ggggcgaatt tgcaacaggt aaaaaacatg
     5281 ttgtttagcc ggagaataat ccagttttac agcaaattca atttccacag gtcgtcccat
     5341 ttcagcctgc gcaatgtgca acacttcttt cagaatgtcg gcgagtggaa agatattgtg
     5401 ttgcaatata ttggcaaaag tgattatttt acgtccgcct tcatatagtc cttgtaaaat
     5461 gacattatcg cggggattga aagtggaggc aataaattta agcgttccat ccttttcagc
     5521 ttcgcttacc ggaattcgca gcaaattaaa accatcgtct acctgaggta caaaatgagt
     5581 ttgcttcaaa tccaacgcat taaaaaatgt ctgtgtttcg tgcaaagcca gttcaagtgt
     5641 gctggtttgc aaaatattat taggatatgc cggcgaaaaa cgcaggctca tgccaccatc
     5701 cataatgtgt ttgcccaatc ccatggcgat actagcaatg ccatcttcag gcctttcggc
     5761 tccaattggg taataattaa gggaacgggc cacacccgag aatgaaggat aaaagcgatc
     5821 ttcgtaagca tttccgcaaa tttcctgcaa cacaatggcc attttttcct cgtcaataat
     5881 atttttggtg gcagtcatat atgctttgct atcgcggtaa aacacagatg catataccgc
     5941 cttaatagct tcagtaacct tttcgagcat atgcgtccgg ctattggggc taaagggcac
     6001 catgtaggta gcataaatac cggcaaatgg ctgataatga gagtcttcga gcaaactgga
     6061 cgaacgaacg gcaataggcg aagcgatggc tcccaaaaag accattaaat cggcaatcag
     6121 atggtgcgga atacgtgctt taagaaagtg ggaaagtatt tcttcatcgc tacaatccga
     6181 caaagctatg ggatacagct tattctgttc cataaattcg gtaaaattgt cggtacacaa
     6241 cacgactgtt tttggtatca caatctgcgt gttggcaaaa ttttccaaac tctcgttccg
     6301 tttaatcatt gcatcgataa atgccaaccc ccgaccctta ccacctaacg aaccatcgcc
     6361 aatccgggca aaattagaat actggtcaaa tctgtcacgt tgaaaaagag ctaccacacc
     6421 ccggtttttt accttgcggt aatgtacaat agcatcaaaa atgatttggc gaacttttcc
     6481 taaatcactg tgaacatcgt tatcaacact aatatttttc aaaaactctg ccagtggaaa
     6541 catagcccgc gagtacaacc aacgggaaat attattgcgc gaaacatggt aataaagcga
     6601 ctcatcgctc acattaaaaa tgctttcctg caacccgcgc agattttgca cgcgagcctc
     6661 ttcaaccccc gtttccggat ttataaagac aaaatcgccg aatccaaaat tgttcgtgat
     6721 tttttcacgc aactccataa gcagtgtttt cgacatttta ttaagaaaag ccgctttcac
     6781 agaatcggca gcgacatggt tttcttcttc ggtagattct actattaagg gaatatgttt
     6841 atcgaaattc cggatttcgc gacaaaggtt gataccggct tttttatttt tttggccgtt
     6901 ttgcatgtag cttacatccg taatcacgcc cagcatattg tttttgtatt tttcccagat
     6961 tgacagccct tcttcataag aacgcgccaa cagaattttg ggacgaccgc gcatacgcaa
     7021 catttgctcg tgttcgttca atgcctcagt cataaacgac cggctctgct taaacacgaa
     7081 tttatataaa tggggtacaa tggacgaata ccaccggatg gaatcttcaa caaataaaat
     7141 aacctgaact cccaccgaat ttacatcctc ctcaacgttc atcctatctt caatcaactt
     7201 aataatagcc agcagaatat ctgaatttcc cagccagctg aatacataat cgatagcact
     7261 cagatcctcg ttggcaattc gttgcgagac ggactttgaa aaaggcgtga gtactacaat
     7321 gggaatgtcc ggaaattgtt ttttgacacg ct
//
LOCUS       DATDNM010000889         3463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_210555, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000889 DATDNM010000000
VERSION     DATDNM010000889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3463
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210555"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..634
                     /locus_tag="VI413_14760"
     CDS             <1..634
                     /locus_tag="VI413_14760"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HEY6915936.1"
                     /translation="NTSESIFEITFAGGGNWMTWMCGIDLSSSTSTYDWKKWFTPSRD
                     LIAAFDAAKDTERKKQTIVNADVSWSLHYPSKGYPFMYKYRSKFHSFLKMRLADILLL
                     KAEAYVGKGDAANATTLVNRIRTRAKLTNLTTVTLADVLNERRLELAFEGQRWFDLVR
                     TDNVIPVMNSLNSRDVGRLPMNPVTVDKTLQPIPQAQIDKNPSMSQNPGY"
     gene            671..2062
                     /locus_tag="VI413_14765"
     CDS             671..2062
                     /locus_tag="VI413_14765"
                     /inference="COORDINATES: protein motif:HMM:NF027723.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5016 domain-containing protein"
                     /protein_id="HEY6915937.1"
                     /translation="MKNIIKSLLLISLSLTVWSCTNEDVVVHYPASTPKIDTAKVAET
                     QITYGDTIHVKVAVSDKVEPLSTLLLKVVVSNEVISTETIRTKGNTASIERKIAVPFG
                     PNRPDNEPVKVYLTLTNVEGFTRDSIVSTTIAKRPVGLDVFYLVPDFGQGATVKLTLT
                     DPAKLIYTVAGLQLKNSFSYKIATKIDKFKRIDWSGYVFGKVENGIGLISSTGESLTS
                     TDATLVGISEFTFNALMFTTKVAGKLLEPAKTLDIDIDLPALTMGGNDFKGGNIYFGE
                     NVEVTFTGITDLANNLSPDYFQVTGTNTAKFLGKTGLYKAYYLISSGYLYIEPQPETI
                     YPDVLWICGVGFGRPQSPYTTTASWNWNSPLDYAPCRQVSPGVYQVTVYLKNEATTAE
                     IGSLNFKFFDYRGWDHGEELSTSFTVSAPLAASSSAGNVGNTTGLSSNPFEGVYRITL
                     NKNDNTIKAEKKN"
     gene            2182..>3463
                     /locus_tag="VI413_14770"
     CDS             2182..>3463
                     /locus_tag="VI413_14770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006841705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosylceramidase"
                     /protein_id="HEY6915938.1"
                     /translation="MFKRNLVLSTVFLSVLSLSSCKAEEIIPIVNPPASKDVDVYVTT
                     ANKSMLFVPVPLSFGTKPNMAIETTINLKPTERYQEIDGFGAAITGSSCYNLLRMSAA
                     NRAALLKETFDPINGMGYSYIRISIGASDFSLDEFTCCDTPGIENFSIPAYDIRDLFP
                     VLREILAINPNLKILASPWSCPRWMKVNNLTELQPYNSWTSGQLNPKYYQDYATYFVK
                     YVQAMKHEGFNIDAITIQNEPLNRGNSMSLYMSWQEQAAFVKSALGPKFAEAGISTKI
                     VAFDHNFNYDNIADQSSYPVKMYADPDVAKYVDGAAYHAYGGSKSELLNVHNAYPNKN
                     LYFTEMSIGSWNYTFDGDLMWSMREIGIGCLNNYCKSVIVWNYMLDEKGAPNRPGGCT
                     TCYGAVDISSADYKTLDRKSHFYVIGHLSKAISPG"
BASE COUNT         1050 a          683 c          740 g          990 t
ORIGIN      
        1 aaatacatcc gaatctatct ttgaaattac ttttgctgga ggtggcaact ggatgacatg
       61 gatgtgcggc atcgatttgt ccagttcgac aagtacatac gattggaaaa aatggtttac
      121 tccgtcacgc gatttgattg ctgcttttga tgcagctaaa gatacagaac gcaaaaaaca
      181 aactattgtc aatgccgatg tatcctggag tttgcattat ccttccaagg gatatccgtt
      241 tatgtataaa taccgctcta agtttcacag ctttctcaaa atgcgtttag cagatatttt
      301 gttattgaaa gcagaggctt atgttggtaa aggagatgcc gctaacgcta caaccctggt
      361 gaatagaatc cgcacaagag ctaaacttac aaacctgaca acagttacat tggctgatgt
      421 tttaaatgaa agacgtctgg aactggcatt cgaaggacag cgttggttcg atttagtgcg
      481 tacagataat gttataccag ttatgaatag ccttaatagc agagatgtcg gtcgcttgcc
      541 aatgaatcct gtaacagtag ataaaacttt acagccaata cctcaggcac aaatagataa
      601 aaacccgtct atgtctcaaa atccgggata ctaatttgca ataaaggaca aatttaaata
      661 tagataaatc atgaaaaaca taataaaaag ccttttattg ataagtttgt cattgactgt
      721 ctggtcatgt acaaatgagg atgttgtggt tcattatccg gcatcaaccc caaagattga
      781 tacggcaaaa gttgccgaaa cgcaaattac ttatggtgat acaattcatg taaaagtggc
      841 ggtatccgat aaggtagaac cattgtcaac cctgctattg aaagtggtag tgagcaacga
      901 agttatttct accgaaacca tccgtaccaa aggaaatact gccagcattg aacggaaaat
      961 cgctgtgcct ttcggaccca acagaccgga taacgaacct gtaaaggtct atctgacgct
     1021 caccaacgtg gaagggttta caagagattc cattgtgagt actactatag ctaaacgacc
     1081 tgtagggtta gacgtatttt atctggtgcc cgattttgga caaggtgcta cagtgaaact
     1141 gacacttacc gatccggcaa aactgattta tacagtagcc ggattgcaac ttaaaaattc
     1201 tttcagctac aagatagcca caaagattga taagtttaaa cgtattgact ggagcggtta
     1261 tgtatttgga aaagtagaaa atggcattgg tcttatttca agtacaggcg aatcgctgac
     1321 ttctacagat gcaactttag tcggaatttc tgagtttaca tttaatgcac ttatgtttac
     1381 cacaaaagtt gccggaaaat tactcgaacc tgccaaaacg cttgatattg acattgattt
     1441 acctgcgtta accatgggtg gaaatgattt caagggtggt aatatttatt ttggtgaaaa
     1501 tgtggaagta acattcaccg gaatcacgga tttggctaat aatctgtcac cagattactt
     1561 ccaggtaacg ggtaccaata ctgcaaaatt cttaggtaaa accggacttt acaaagcata
     1621 ctatttgatt agttcagggt acctgtacat tgagccccaa cctgaaacca tttatcctga
     1681 tgttctgtgg atatgtggag taggttttgg gcggccacag tcgccttata caaccactgc
     1741 cagctggaac tggaacagtc cgctggatta tgctccatgc cgccaggttt ctccgggtgt
     1801 ttatcaggta acggtttatc tcaagaatga agctactaca gcagaaatag gatcactcaa
     1861 tttcaagttc ttcgattaca gagggtggga tcatggagaa gaattgtcaa cttctttcac
     1921 agtttcggct cctttggctg caagttcgtc agccggaaat gttggtaata ctactggttt
     1981 gagcagtaat ccgttcgaag gagtttatcg cattacactc aataagaacg acaatacaat
     2041 aaaagctgag aaaaagaatt aaggtcaact attcccggga gttatctttt tgttggataa
     2101 tttcccgggg taaataaacc catgagtgat attccagtct gattataatc aattaattct
     2161 ttagaaaact tataattcat catgtttaaa cgcaatcttg ttttatcaac agtattttta
     2221 tctgttttat cactttcatc ctgcaaggct gaagagatta taccgatagt aaatccaccg
     2281 gcttcgaaag atgttgatgt gtatgtaacc acggctaata agtccatgct atttgtaccg
     2341 gtaccattga gttttggcac taagcccaat atggcgattg aaacaactat taacctgaaa
     2401 cctacagaaa gatatcagga aattgatggt ttcggagctg ccattacagg gtcatcgtgt
     2461 tataaccttt tacgtatgag tgctgccaac cgggctgctt tgttgaaaga aacttttgac
     2521 ccgataaatg gtatgggata cagctatatc cgtatttcaa taggtgcatc cgatttttcg
     2581 ctggatgaat ttacctgctg cgacaccccc ggaatcgaaa atttcagtat tcctgcttac
     2641 gatatccgcg atctttttcc ggtactccgg gaaattctgg ctatcaatcc caatctgaaa
     2701 atactggcat cgccctggag ttgcccccgt tggatgaaag taaataacct gacggaactg
     2761 caaccttata attcatggac cagcgggcag ttaaacccga aatattatca ggattatgcc
     2821 acttattttg tgaaatacgt tcaggcaatg aagcacgaag gattcaacat cgatgctatc
     2881 actatacaaa acgaaccgct taaccggggt aattccatgt cgttatatat gtcgtggcaa
     2941 gagcaggccg cttttgtaaa gagtgccctg ggacctaaat ttgccgaagc cggtatcagc
     3001 actaaaattg ttgcattcga ccataatttc aattacgata atatagctga tcagagcagt
     3061 tacccggtaa aaatgtatgc cgaccctgat gttgccaaat acgttgatgg agctgcttat
     3121 catgcctatg gtggtagtaa aagcgaattg ctgaacgtcc acaatgccta tccgaacaaa
     3181 aacctctact ttaccgagat gtctatcggg agctggaatt acactttcga tggggatttg
     3241 atgtggagta tgcgggagat tggaatcgga tgtttgaata attactgcaa atcagtcatt
     3301 gtatggaact acatgctcga cgaaaaagga gcaccaaacc gtcccggagg ttgcactacc
     3361 tgctatgggg ctgtggatat cagttcggct gactataaaa ctctggaccg taagtcgcac
     3421 ttctatgtga ttggtcattt gtcgaaagcc atatctccgg gtg
//
LOCUS       DATDNM010000890         4524 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_958473, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000890 DATDNM010000000
VERSION     DATDNM010000890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4524
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_958473"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..602)
                     /locus_tag="VI413_14775"
     CDS             complement(<1..602)
                     /locus_tag="VI413_14775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY6915939.1"
                     /translation="METLCRFNGSDCYGAKELEVLLELSSLLSNKEIDLDEAIRILAE
                     HLKAERIILTILNRENSHITIEGAYGIDDNKRKEAVYQLGHGIIGRVIETGEQILLPK
                     IASSHEFLNLTDAAKVIDGVDVSFICTPIRYKDEVIGTLSMHKVYRRFVSFDYDLRML
                     KIVGSMIGRTLRRRQEYAEEMEQLRNENSNLRGELRNRIMP"
     gene            926..2158
                     /locus_tag="VI413_14780"
     CDS             926..2158
                     /locus_tag="VI413_14780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside recognition domain-containing
                     protein"
                     /protein_id="HEY6915940.1"
                     /translation="MILNYIWIGFILIAFVVACIQFFVTGNSNIFMEVMQAAFGSAKT
                     GFEISLGLTGMLSLWLGILKIGENGGAINKLSRMVAPFFSKIFPEIPAGHPAMGSIFM
                     NLSANMLGLDNAATPLGLKAMKELQEINPDKEKASNPMIMFLVLNTAGLMLVPISILT
                     FRQQLGAANPADVFLPILIATFCAALTGLITVSIIQKINLFQRTVLLTIGGMISLIGG
                     LIYMLSRLPKEDIAKYSNFAAYLILFSIIVTFIVMAMRNRINVYDSFIDGAKEGFNVA
                     IKIVPYLIGILVAIAMFRTSGAMDYLILGIKNLVSLTGVNTDFVEALPTALMKPLSGS
                     GARGMMVDAMKIHGADSFVGRLSCIIQGSADTTFFILAVYFGSVNIKNTRYALACGLL
                     ADLAGITAAIFLGYLFFH"
     gene            2174..2590
                     /gene="ybeY"
                     /locus_tag="VI413_14785"
     CDS             2174..2590
                     /gene="ybeY"
                     /locus_tag="VI413_14785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEY6915941.1"
                     /translation="MIQYIAEEIKLPALQKQKINSWIKETAAGYGKKVGDIAYIFCSD
                     ERILEINKQYLNHDYFTDIITFDYSEGSLISGDIFISVDTVRSNSEEFGVSFEVELLR
                     IIIHGVLHLSGQDDKTPELRNEMTIKENLALEKYTK"
     gene            2811..3470
                     /locus_tag="VI413_14790"
     CDS             2811..3470
                     /locus_tag="VI413_14790"
                     /inference="COORDINATES: protein motif:HMM:NF039345.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6089 family protein"
                     /protein_id="HEY6915942.1"
                     /translation="MKLIRFFILCVFALFYAQLSAQNKYVKDEYQAEIGIAGGENFYI
                     GETNSQLFNYSRVAFSGFFRYRINPRIAFKADLTRAIVAGSGMVDNPVYVGDLSGEFN
                     FFDLEQNPYKLHSKTFSPYIFSGFSVLTDVYDGQKLPVLGLLFGVGMKVKLHGRWNLN
                     AQWSNRLLFSDKLEGSVLLYNNPNILNGSNIFNNDFLSTFTVGISYDIWKKPCDCLKN
                     N"
     gene            3508..4233
                     /locus_tag="VI413_14795"
     CDS             3508..4233
                     /locus_tag="VI413_14795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEY6915943.1"
                     /translation="MSSNKEKIDLNRLPEHIAIIMDGNGRWAKERGYDRIFGHQNGVT
                     SVRETTEAAAEIGIKYLTLYAFSTENWNRPQQEVDALMELLINTIEKETPTLNKNNIR
                     LMAIGDLSRLPGSAGEKLQRCINTTSKNTGLALVLALSYSSRWEITNATKNICKEVLD
                     GKINIDDINDELISNHLTTKSIPDPDLMIRTSGEERISNFLLWQIAYSELYFTETHWP
                     AFRKEDLYQAIYEFQQRERRFGK"
     gene            4275..>4524
                     /locus_tag="VI413_14800"
     CDS             4275..>4524
                     /locus_tag="VI413_14800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915944.1"
                     /translation="MQYKTLFSISLLFIFSQLLVAQTTTEKDSTELPVIEYSNSTPKY
                     EIAEIKVTGASNYEDFVLIGFSGLAVGDIINVPGDAITN"
BASE COUNT         1449 a          877 c          811 g         1387 t
ORIGIN      
        1 ggcattattc tattccggag ttcacctctc aaatttgaat tttcattgcg caactgctcc
       61 atctcctccg catactcctg cctgcgtcgc aacgtacgac caatcatgga acccacaatc
      121 ttgagcatgc gcaaatcgta atcgaaagac acaaaacgcc tgtacacttt atgcatgctc
      181 aacgtcccaa taacttcatc tttgtatctt attggcgtac aaataaatga aacatcaact
      241 ccatcaatta ctttagcagc atcggtcaga tttaagaatt cgtgcgaaga tgcaatttta
      301 ggcaacaaaa tctgctcacc ggtctcaatc acacgcccga taattccatg acccaactga
      361 tataccgctt cttttctctt gttatcatca attccatatg ccccttcgat tgtaatatga
      421 gaattttccc gattcaaaat agtcaaaatg atacgttcgg ctttcaaatg ctcggccaga
      481 attcgtattg cctcatctaa atcgatttct ttattactca acaaagaact taactccaac
      541 agaacctcta attccttagc cccataacaa tcggaaccat taaacctaca caatgtttcc
      601 ataaacaaca atatatacaa cttttgacac taaatacaaa taataacata cctttatctg
      661 caaaattact attttttatg gcaatatggc aatattttaa aaacaaaaac cattatttta
      721 accattaaac taaattcaag cacaaaagag gtctatttgc tttttcaaaa aacaaattat
      781 agactctttg ttcggatttg tccatatttg attgagacca atatctaaag ctgaatgctc
      841 atttaaataa aaaaaaatgt acttttgcat ccattcttca aaaacaaatc gattttgtgg
      901 gatatataac tgaaatttat tacgtatgat attaaactat atctggatag gatttattct
      961 cattgcattt gtagtagctt gtatacaatt ctttgttacc ggcaactcca acattttcat
     1021 ggaagtaatg caggcagctt ttggatctgc aaaaacaggt tttgagatct cgctgggttt
     1081 aacaggaatg ctttcattgt ggttgggtat attaaagatt ggcgaaaatg gtggagccat
     1141 caataaatta tcccgaatgg tagccccttt tttttcaaag attttccccg agataccggc
     1201 agggcatccg gctatgggca gtattttcat gaacctttcg gccaatatgc tcggacttga
     1261 taatgccgcc acccctcttg gactcaaggc tatgaaagaa ttacaggaaa ttaatcctga
     1321 caaagagaag gcatctaacc caatgatcat gttcctggtg ctaaatacag ccggattaat
     1381 gctcgtccct attagcattc tcactttccg ccaacagctt ggcgctgcca atccggccga
     1441 tgtgttcctt cctatcctta ttgccacttt ttgtgctgca ctaacaggac taattacagt
     1501 atctattatt caaaaaatca atctgtttca acgtactgta ttgctgacaa tcggaggaat
     1561 gatttcactt attggaggat tgatttatat gctaagtcga ttacctaaag aagacattgc
     1621 aaaatattct aacttcgcag catatctgat tctttttagc atcattgtta cgtttatagt
     1681 catggctatg cgaaacagaa taaacgtata cgattcattt atcgatggtg caaaagaagg
     1741 ttttaatgtg gcaataaaaa ttgtccctta ccttatagga atattggttg cgattgcgat
     1801 gtttcgtacc tcaggagcca tggactacct tattttggga attaaaaacc ttgtatcact
     1861 aacaggcgta aataccgatt tcgtagaagc actgcctact gctcttatga aaccgcttag
     1921 cggaagtggt gcacgtggca tgatggtgga tgctatgaaa attcacgggg cagattcatt
     1981 tgtcggccgg ttgtcctgca tcatccaggg ttcggcagat accactttct ttatcctggc
     2041 tgtatacttt ggttcggtta acatcaaaaa cacccgctat gcattggctt gtgggctttt
     2101 ggctgatctg gccggaatca cagcagctat tttcttagga tacttatttt ttcactgata
     2161 aaccccaaaa aaaatgatac aatatattgc tgaagaaata aaattacctg cactgcagaa
     2221 acaaaaaatc aatagttgga ttaaagaaac tgcagcaggt tatggcaaaa aagttggtga
     2281 tatcgcctac attttttgct cggacgagcg cattctggaa ataaacaaac aatatctgaa
     2341 ccacgactac ttcaccgaca tcatcacatt cgactatagt gaaggttctc tcatatcggg
     2401 cgacatattt ataagcgtgg atacagtgcg gagcaattct gaggaattcg gcgttagttt
     2461 tgaggtagaa ttactcagaa tcatcattca tggtgttctt catctttccg gacaagatga
     2521 caaaacgcct gaattgagaa atgaaatgac aataaaggaa aatttggccc tcgaaaaata
     2581 cacaaaataa aggtttttaa gcttatttat aatagcttgg gcactcaatt attactaact
     2641 ccataataat gcaataatat gttaaatata ccccttgctt taggggcatt ttatcatcat
     2701 taaaagatta tcactacttt tgttgcagga tttagtttgg aatgataaaa tttaaaacca
     2761 aaaaacacgt tataagtcta attacatata ctaaatcaaa cggtatgaat ttgaaattaa
     2821 ttagattttt tattttatgt gtttttgctt tattttatgc tcagttgtca gcacaaaata
     2881 aatatgtcaa agatgagtat caggctgaaa ttggtattgc cggtggagag aatttttaca
     2941 taggcgaaac aaatagccaa ctattcaact atagccgtgt tgctttcagc ggttttttcc
     3001 gatacaggat taatcccaga atagctttta aagctgatct gacaagggct attgttgccg
     3061 gttccggaat ggtggataat cctgtttacg tgggagatct tagtggcgaa ttcaattttt
     3121 ttgatttgga gcaaaaccca tacaagcttc acagcaagac tttttcgcct tatatttttt
     3181 ccgggttttc agttttgaca gatgtttatg acggtcaaaa actacctgta ttgggtttgc
     3241 tttttggtgt tgggatgaaa gtaaaactgc atggccgttg gaacctgaac gcccaatggt
     3301 cgaacagatt attatttagc gataaacttg aaggctctgt ccttttgtat aataatccga
     3361 acatattaaa tggttcaaac attttcaaca atgactttct ttctactttt acagtaggta
     3421 taagttatga tatttggaaa aaaccatgcg attgcctgaa aaacaattaa agtaatttat
     3481 ctcgaaatag ccaacctttc taaaaatatg tctagtaata aagaaaaaat tgatttaaac
     3541 cggcttccgg aacatattgc cattattatg gatggcaatg ggcgttgggc taaagagcgt
     3601 ggttacgatc ggattttcgg acatcaaaat ggtgttacat cggttcgcga aactacagaa
     3661 gccgctgctg aaatcgggat taaatacctg actttgtacg ctttctctac cgagaactgg
     3721 aacaggccac aacaggaagt ggatgcatta atggaattgc ttatcaatac aattgaaaaa
     3781 gaaactccta ctttaaataa aaacaatatc cggctaatgg caattggcga cttgagtcga
     3841 ctgcccggaa gcgctggaga aaaacttcaa cgttgtatta atacaaccag caagaatacc
     3901 ggattggcat tggtattggc attaagctat tcatcgagat gggaaattac caatgcgaca
     3961 aaaaatattt gcaaagaagt gttggacgga aaaataaaca ttgacgatat caatgatgaa
     4021 cttatcagca accatttaac aacaaaatca ataccggacc cggatttaat gattcgaacc
     4081 agtggagaag agcgcataag taattttttg ctttggcaaa ttgcttatag cgaattatat
     4141 ttcaccgaaa cacactggcc ggctttcaga aaagaagatt tatatcaggc aatttacgaa
     4201 tttcaacaac gagaacgtcg ttttggcaaa taatcagacc aattccgttt cattaagata
     4261 ctccaaaata aattatgcaa tacaaaacgc ttttctcaat ttccttgcta ttcattttca
     4321 gccaacttct tgtagctcaa actaccaccg aaaaagattc gacagaatta ccggttattg
     4381 aatattcaaa ctcgacacca aaatatgaga ttgccgaaat taaagttacc ggagcaagca
     4441 actacgaaga ctttgtattg attggtttct ccggccttgc agttggcgac attatcaatg
     4501 ttccgggaga tgcaattacc aatg
//
LOCUS       DATDNM010000891         2718 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_531419, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000891 DATDNM010000000
VERSION     DATDNM010000891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531419"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            197..724
                     /locus_tag="VI413_14805"
     CDS             197..724
                     /locus_tag="VI413_14805"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF018525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6915945.1"
                     /translation="MTNYFIIPGYQGSGPDHWQTWIEKQQTNIQRIQQKDWEHPDIQE
                     WAANIDKAIAGYDPESVVLVAHSLGCLTVAEWVKRYNRKIKAALLVAPPDTDVIRQKV
                     DNSLIDEVPTHSIPFRTTLVASTNDPWISIEKAEFYAKNWGSEFINIGAAGHINNLSG
                     YGEWEEGLEILRKLG"
     gene            782..910
                     /locus_tag="VI413_14810"
     CDS             782..910
                     /locus_tag="VI413_14810"
                     /inference="COORDINATES: protein motif:HMM:NF012799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEY6915946.1"
                     /translation="MNERTKYGKVTLVGFGPGDPDLLTIAGDKAMSKADVIFTTTW"
     gene            904..1521
                     /locus_tag="VI413_14815"
     CDS             904..1521
                     /locus_tag="VI413_14815"
                     /inference="COORDINATES: protein motif:HMM:NF012799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEY6915947.1"
                     /translation="MVDKDFLEKYKAEKVYVGKRRHCHSYEQEVINELILEAAQSGKN
                     VVRLKGGDSMIFAHGGEEIEFLKENGVEVAVIPGVSTGIAVAGLTQIPLTLRGIAKSV
                     SFITGHTTDMELPNTDTLVCFMAGSTIHKIAAKAIAEGRNPKTPVALVCNVSLPDQKE
                     YITDLESLSLSETTYPTPIIIIIGYVVSSRKNVRIPSDCLSTTLV"
     gene            complement(1566..>2718)
                     /gene="hemG"
                     /locus_tag="VI413_14820"
     CDS             complement(1566..>2718)
                     /gene="hemG"
                     /locus_tag="VI413_14820"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004729 - oxygen-dependent
                     protoporphyrinogen oxidase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HEY6915948.1"
                     /translation="KSGKCQVELGGKNVNKRFILKNGKWECMPLGPKDAILTPLFTLK
                     DKLRILTEPFRPAGKNPHENLASFVKRRMGESFLNYAIDPFIKGVYAGDPNYLIPKYA
                     LPKLYNLEQKYGSLIGGSVKKGFKEKKTEEEKKVSRKTFSFVNGLGSLTKALHESAGI
                     ENFILGAENISVQPSGNGYLITYQNVNGEIYSVHAKNVISTLGAYALENTLPFIDRQA
                     MAKIDSLLYTKVIEVAVGFEKWDGEKLDGFGGLIPSLEKRDILGVLYMSSLFENRAPE
                     TGALFSIFMGGVSRQDLMLLSDEGVCNIVERECKELLNLKTFEPDLFKIMRHNWAIPQ
                     YGVESGERFATVEMLEKQYPGLQIGGNLRGGIGMADRIKQGKELAENII"
BASE COUNT          801 a          583 c          565 g          769 t
ORIGIN      
        1 ttttagcaca tcactatctt tttctgtgat cttgggtttg gatcggataa aggatggtga
       61 atgtgctatt tttttattgg aatcatacca cattcaaggt ataaatttac catctttgtg
      121 cgattgcagc aattcaagaa attgaggaat tttgtatcgt ctggaaagga tatgaaaaca
      181 ctcaattttg aagcatatga caaactattt tataattcca ggttatcagg gttcggggcc
      241 ggatcattgg caaacatgga ttgagaaaca acaaaccaac atacaacgca tccagcagaa
      301 agactgggaa cacccggata tacaggaatg ggctgcgaac atagataaag caattgcggg
      361 atacgatccg gaatcggtgg ttttggtcgc gcatagtttg ggttgcctca cggtggcaga
      421 atgggtaaaa cgttataacc ggaaaatcaa ggctgccttg ctggttgcac cgccggatac
      481 ggatgtaatt cgccagaaag tagataatag tctgatcgac gaagttccta ctcacagtat
      541 tccattccgg actacactgg tagccagtac taatgacccc tggataagca ttgaaaaggc
      601 cgaattttat gcaaaaaact ggggaagcga atttataaac attggtgcag ccggacatat
      661 caacaatctt tcgggctatg gcgaatggga agaaggactg gaaattttga gaaaattggg
      721 ataatttaaa tttaagcttt tccaaagttt taaactttgg aaaagctata taaaaaaaga
      781 aatgaacgaa agaacaaaat acggcaaagt cactctggta ggttttggac ctggcgatcc
      841 cgacttgctg accattgccg gtgataaagc tatgtcaaag gccgatgtca ttttcacgac
      901 gacctggtag ataaggattt tcttgaaaaa tataaagctg aaaaagtata tgtcggcaaa
      961 cgccgtcact gccacagtta tgaacaggaa gtcattaatg agttaatact tgaagcagcc
     1021 caatccggca aaaacgtggt gcgtctgaag ggtggagatt ctatgatctt tgcccatggc
     1081 ggcgaagaaa ttgaattcct gaaagaaaac ggcgtggaag tggctgttat acccggggtt
     1141 tctaccggaa ttgctgttgc gggactgacc cagattccat tgacactaag aggcattgca
     1201 aaatctgttt cgttcattac cgggcataca accgatatgg aattgcctaa caccgacacg
     1261 ctggtttgct ttatggccgg atctaccatt cataaaatag ccgccaaagc cattgccgaa
     1321 ggccggaatc cgaaaacacc cgttgcattg gtctgcaacg tttcgttacc cgaccaaaag
     1381 gaatatatca cagatttaga aagtttaagt ttatcagaaa caacataccc aactccgatt
     1441 atcatcatca tcgggtatgt ggtatcttcc cgaaagaatg tgcgaattcc atcggattgt
     1501 ctttcaacaa cgttggtata gcaacctttt ccaaagtttc agaactttgg aaaaggttgc
     1561 tataatcaga ttatattttc cgccagctct ttgccttgtt taatacggtc ggccatgcca
     1621 atgcctccac gcaggtttcc gccaatttga aggcccggat attgtttttc cagcatttca
     1681 acggtagcaa accgttcacc gctttccacg ccgtattgcg gaatggccca attatgacgc
     1741 ataattttga ataaatcggg ttcaaaggtt ttcaagttca gcagctcctt gcattctctt
     1801 tccacgatat tgcatacacc ttcgtcgctc agcaacatca gatcctgacg gcttacacca
     1861 cccataaaga tactgaacaa tgcaccggtt tcaggagcac gattttcaaa taacgaagac
     1921 atataaagta caccaagaat gtcgcgcttt tcgagcgaag gaatcaaccc gccaaatccg
     1981 tcaagttttt caccgtccca tttttcaaaa ccgacagcca cttcaatcac tttggtgtaa
     2041 agcaacgaat ctatttttgc catagcttgt ctgtcgataa acggcagggt attttccaat
     2101 gcgtaagctc caagcgttga aattacattt ttcgcatgaa cagagtagat ttcaccattc
     2161 acattttgat atgtaataag atagccattt ccagacggtt gaacgctaat attttcagcg
     2221 cctaaaataa agttctcaat tccggcagat tcatgcaatg cctttgtaag tgagccaaga
     2281 ccatttacaa atgaaaatgt tttccggctt acttttttct cttcttccgt tttcttttct
     2341 ttaaaacctt tttttacaga cccacctatc aaactgccat atttttgctc caaattgtag
     2401 agttttggta gcgcatattt cggaataagg taatttggat caccggcata aacgcctttg
     2461 atgaacggat cgatagcata gttcagaaaa ctttctccca tacgcctttt gacaaacgaa
     2521 gccagatttt cgtgcggatt ttttcctgcc ggacgaaacg gttcggtcag aatacgcaac
     2581 ttatctttca gcgtaaaaag gggggttaat atcgcatctt tcggcccgag cggcatgcat
     2641 tcccatttgc catttttaag gataaaacgc ttgttcacat ttttaccacc cagttccacc
     2701 tggcatttgc ctgatttt
//
LOCUS       DATDNM010000892         2434 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_531430, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000892 DATDNM010000000
VERSION     DATDNM010000892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531430"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2307
                     /locus_tag="VI413_14825"
     CDS             <1..2307
                     /locus_tag="VI413_14825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010537944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY6915949.1"
                     /translation="LDAAKWKPTLKIKSIRLGSEPRINIWEGKSGLVWRIADETPSEE
                     ISAKEFIPTKKIINLTSYFKDGKLTCKLPRGNWRILRMGHTSTGLTNATGGGGKGLEC
                     DKFSETAVQKQFDNWFGAAFKETDKELAQRILKFMHIDSWECGSQNWSSNFAAEFQAR
                     RGYDLTPYLPLLAGFPIESAQKSEQVLRDVRTTIAELVNDVFFKVMVKNAKAYGCEIS
                     AECVAPTMVSDGLLHFNQVDRPMGEFWLKSPTHDKPNDMLDAISGAHIYGKNIIQSES
                     FTQLRTNWDEEPAMLKPVLDRNFALGINKVFFHIFVHNPYPDKAPGATLDGIGLYFQR
                     DQTWWKPGKAFVDYVARCQALLQYGHPVTDIAVFTGEELPRRAFTPDKLVPMLPGVVG
                     KERVDSEQKRLANVGQPMREMPAGVNHSANIMKPEGWINPLNGYAYDSFNKDALLRLS
                     KAQNGKMKLGDSTVYKVVVFPQGTAYSPEVQAKIAELKQADVIVPELPLKTSLNFEPD
                     VVAPKNIAWTHRAGEIGDIYFISNQENATRNFDIIFRCAKNKPTQWNPVTGEIEQIKK
                     LGGVDAKARTKINITLAPYESTFIVFSYKNDTESKYVTLLDDSIVIDGKWDVRFPKNN
                     QEVKQTYLFDWSQISNPLIKFYSGTAVYKTTFNFKSDNIKQVDAQTRPVCLSLGKVCN
                     LATVRINGVDCGTAWTAPYEVDITKALKKGINTLEIEVTNTWANAINGSDKGTPPFPG
                     IWTDGKYRMSEGKLLEAGLLGPMKIVQR"
BASE COUNT          724 a          514 c          584 g          612 t
ORIGIN      
        1 ttggacgcag ccaaatggaa accaacgcta aaaattaaaa gcattcggtt gggttccgaa
       61 ccgcgaatca acatctggga aggaaaatcc ggattggtgt ggcgtattgc cgatgaaact
      121 ccctcggaag aaattagcgc aaaagaattt attccaacaa aaaaaatcat aaacctgact
      181 tcgtatttta aagatggtaa actaacctgc aaacttcccc gtggcaactg gcgtatcctg
      241 cgcatgggcc acacttctac tggacttacc aatgcaaccg gaggaggtgg caagggcctg
      301 gaatgtgata aattttcgga aacggctgtt caaaaacaat tcgacaactg gtttggggct
      361 gcattcaagg aaacagacaa agagttggcg caacgtatat tgaaatttat gcacatcgac
      421 agttgggagt gtggcagcca gaactggagc agcaattttg ccgcagaatt ccaggctcgc
      481 cggggttatg atttaacgcc ttatctgcct ttgttggctg gcttcccgat tgaaagcgcc
      541 caaaaatcgg aacaagtgct gcgcgacgta cgaacaacta ttgccgagtt ggtaaacgat
      601 gtctttttca aagtaatggt gaaaaatgcc aaagcgtatg gctgcgaaat ctcagccgaa
      661 tgcgttgcac ctacaatggt gagcgatggg ttgttgcatt tcaaccaggt tgatcgtccg
      721 atgggagaat tctggctgaa gagtccaact catgacaaac cgaatgacat gctcgatgcc
      781 atcagcggtg cacatattta cggcaaaaac atcattcagt ctgaaagttt tacgcagctc
      841 cgcaccaatt gggacgaaga accggccatg ctgaaacccg ttctcgaccg caattttgcg
      901 ttgggaatca acaaggtttt ttttcatatt tttgtgcata atccgtatcc ggacaaagct
      961 cccggagcca cactcgacgg tatcggtttg tatttccagc gcgaccaaac ctggtggaaa
     1021 ccgggtaagg cttttgtgga ttatgtggcg cgttgccagg ctttgctgca atacggtcat
     1081 ccggtgactg acattgccgt gtttaccgga gaagaattgc cacgccgcgc tttcactccc
     1141 gataaactgg taccgatgtt gccgggcgtt gtggggaaag aacgtgttga tagtgaacaa
     1201 aagcgcttgg ctaacgtggg gcaacccatg cgtgaaatgc cggctggcgt gaatcactcg
     1261 gctaatatca tgaaacctga gggctggatc aatccgctga atggctatgc ctacgattca
     1321 ttcaataaag atgcgttgct tcggttatct aaagctcaaa atggcaaaat gaaactcggt
     1381 gatagcacag tttataaagt ggttgttttt ccgcaaggaa ccgcctattc gcctgaagtg
     1441 caggcgaaaa ttgcggaact gaaacaagcc gacgtgatag ttcctgaatt gccgttaaag
     1501 acttccctta actttgagcc cgacgtggtt gctccaaaaa atatagcgtg gacgcatcgt
     1561 gcgggcgaga ttggtgatat ttattttatt agcaatcagg aaaatgctac ccggaatttc
     1621 gatatcatct ttcggtgcgc aaagaataaa cctacgcaat ggaatccggt gacgggcgaa
     1681 attgagcaaa taaagaaatt aggtggagtc gatgcaaaag caagaaccaa aatcaatatc
     1741 acactggcac cgtacgaatc tacgtttatt gtgtttagct ataaaaatga taccgaaagt
     1801 aaatatgtaa ccttgctcga cgattctatt gttattgacg gaaaatggga tgttcgtttc
     1861 ccgaaaaaca atcaggaggt gaagcaaaca tatttattcg actggagcca gattagtaat
     1921 ccactcatta aattttattc aggcacggca gtttacaaaa cgacatttaa ttttaagtcg
     1981 gataacataa aacaagtcga tgcgcagacc cgcccggttt gcctctcact aggtaaagtc
     2041 tgcaaccttg ctactgttcg gataaacggt gttgattgcg gaacagcatg gacagcacct
     2101 tacgaagtgg atattaccaa agccctgaaa aaaggcataa atactctcga aattgaagtg
     2161 acaaatacct gggcaaatgc tataaatggc tctgacaaag gtacgccgcc attcccggga
     2221 atatggacag acggcaaata tcgcatgagc gaaggtaaac tgttggaagc aggattgttg
     2281 ggcccgatga agatagtgca gcgatagttc ttttttagtg agagggtgac tcaaagtcac
     2341 cctctcacta tatttaataa tcgaaaaatt ctgagactcc tgtaaatata ccgtaacaaa
     2401 aacggttttt attcgtcttt ttatttatac gtat
//
LOCUS       DATDNM010000893         2776 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_425309, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000893 DATDNM010000000
VERSION     DATDNM010000893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425309"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1918
                     /locus_tag="VI413_14830"
     CDS             <1..1918
                     /locus_tag="VI413_14830"
                     /inference="COORDINATES: protein motif:HMM:NF020337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CotH kinase family protein"
                     /protein_id="HEY6915950.1"
                     /translation="GNIYPVGVYAGGGSNIQNFVFSDVDGNAVIDDTKSKVVLPTTTQ
                     NLAALGTFMSSLTFSGKVPVVDKLKKELFLTVPESKMNSNQTAKVVFGMLNSVYQLYI
                     NSKNVKSGDVITYYAGQTKIPIEVRNGTSVLFTGQIVVTCLPLVQLYTDSDPTAVYNL
                     GRVVVTEADSLESAAEIMLSNLKLRGDYASRVDKKAYALKLKDVDGSTSMNRSFFGLR
                     SDNNWILDAMYIDPARMRNRVSTDFWLDFSTKPYYAVNEPKMLNGTRGKFVEVFLNDS
                     YNGLYCMTEKIDRKQLNLKKLRYSPDSTVITQRGGLYKASNWSIGTQLGNSVTWGTNI
                     LPAYDNNSETWTAFDNKYPDLGDGEPIEWKPAYDAVRVPYWQTDNTTFTSKVATYFDL
                     PVFIDYYLLLDLMLASDNHGKNYYLSVYDQSVNSMVSLTPWDMDGVWGRRWNGTSNLT
                     YANQSLETFILYNEPRQNNLYLRMLQANTENFNNKLKIRYKELRGSYFTLSSIMARFY
                     KYNELFKLSGASTRERTRWAIGDFNTEMTFLSTWITARLKYLDLQYIGSPYTGVDELA
                     ANNIRFSPSPVKDLLTVYDVKAGDMIQIISLQGAVLQQVVSGGENTVVDMSWYNPGVY
                     LIRVGGNTTKIIKN"
     gene            2394..>2776
                     /locus_tag="VI413_14835"
     CDS             2394..>2776
                     /locus_tag="VI413_14835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009001235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEY6915951.1"
                     /translation="MAKIAKNLTELIGNTPLVQLSNYSVNKGLEATVIVKLESFNPAG
                     CVKERIALSMIEDAEAAGILKAGAEIIEPTSGNTGIGLALVAAVKGYKLTLTMPETMS
                     VERRNLLKALGANLVLTPGATGMKGA"
BASE COUNT          855 a          538 c          614 g          769 t
ORIGIN      
        1 gggaaatatc tatccggtag gagtttatgc cggcggggga tcgaatatcc aaaattttgt
       61 tttttctgat gtcgacggaa atgcggtgat tgatgacacg aaaagcaaag ttgtattgcc
      121 aacaacaact caaaatctgg ctgcgctggg cacgtttatg agttcgctaa ctttcagtgg
      181 caaggtgccg gtggtggata aattgaaaaa agaactgttc ctgaccgttc ccgagtccaa
      241 gatgaattcg aaccaaactg ctaaggtggt gtttggcatg cttaattcag tctatcaact
      301 ttatataaac agcaaaaatg taaaatcggg agacgtaatt acctactacg ccggacaaac
      361 taaaattccg attgaggtgc gcaatggtac aagtgtattg tttacagggc aaatagtggt
      421 gacatgtttg ccattggtgc agctttatac cgactcagat cctacagctg tttataattt
      481 gggacgtgtg gtggtaaccg aggcagattc gttggagagt gcagccgaaa taatgctatc
      541 taacctgaaa ttaaggggcg attacgcctc gagggtagat aagaaagcat acgccctgaa
      601 gttgaaggat gtggatggtt caacctctat gaaccgctct ttctttgggt tgcgaagcga
      661 taataactgg attctggacg ccatgtatat tgatccggca cggatgcgta accgcgtgtc
      721 gaccgatttt tggctcgatt tctcaacaaa accatattat gctgttaatg aaccgaaaat
      781 gctcaatgga acccgtggta aatttgtgga agtatttctc aacgattcat ataacgggct
      841 ttattgtatg actgaaaaaa ttgaccgcaa gcaactcaac ctgaaaaaac tgcgttattc
      901 gcctgattca actgtaatta cacaacgggg aggattgtac aaagccagta actggtcaat
      961 tggcacgcag cttggcaact ctgtaacctg gggtaccaac attttgccag cctacgacaa
     1021 taattcggaa acatggactg cctttgataa taaataccct gacttaggcg atggagagcc
     1081 tattgaatgg aaacctgctt acgatgctgt gcgtgtgcca tactggcaaa ccgataatac
     1141 gacttttaca tcgaaggtag ccacatactt cgatttgccc gtgttcattg actattacct
     1201 gcttttggac ttaatgttgg ccagcgataa tcacgggaag aattattacc tctcggtgta
     1261 tgatcagtcc gtgaactcaa tggtgagcct tactccctgg gatatggatg gcgtgtgggg
     1321 acgtcgttgg aacggtacct caaatcttac ttacgcaaat caatcgctcg aaacatttat
     1381 tctgtacaac gagccgcgcc aaaacaacct ttacctgcgt atgctgcagg ctaatactga
     1441 aaatttcaac aataaactga agattcgtta taaggaactg cgtggcagtt attttacttt
     1501 gtcttcgatt atggcccgtt tttacaaata caacgagcta tttaaactga gcggtgcaag
     1561 tacccgcgaa agaacccgtt gggcaatagg tgattttaat acagaaatga ctttcctttc
     1621 aacgtggatt actgcccgcc tgaaatatct cgatttgcaa tacataggct cgccctatac
     1681 aggcgtggat gagcttgcgg ctaataatat caggttctca ccgagcccgg ttaaagacct
     1741 gctgaccgtg tacgacgtaa aagccggcga tatgatccag attatttcac ttcagggtgc
     1801 cgtactccaa caggtagttt ccggcggtga aaacacggtg gtagatatga gctggtataa
     1861 ccccggcgtg tatctgatca gggttggtgg aaatacaact aagattataa aaaactaaga
     1921 atatattttt gatacttatt ggctacgctc gttctctttt gggaggacga gcgtagttgt
     1981 tttatggcta attgatttct gataacacct accagacttt taaaatctgg taggtatggt
     2041 tgaataatat aaacaaattt tgcataatgc ttaaatatag atacttagag ctatgggtgt
     2101 ggaattttct gaatcttttt ctgaaaaatg tctaaataat tgaaaggata gatttaatca
     2161 aatgtcagat taatcagcat atatgaaatt taagtatatt tgtaactaat aacaagatga
     2221 ctaaataaat ccaatctgca cgtgcaggct ctcgtcgctc ggatagatta gttaaaaacg
     2281 cttataccat aaacaaggta tacaaaatac cacatcattg cgattgtgac aaatgtataa
     2341 accctgtatt tttgcatcat aaaaaataaa caaacccaat aaagaatatc gttatggcaa
     2401 aaattgcaaa aaatctcacc gaattaattg gaaacactcc actcgtacaa ctctcaaact
     2461 acagtgtaaa caaaggtctt gaagctactg taattgtaaa acttgaatca tttaatcctg
     2521 caggttgcgt aaaagaacgt atcgccctgt caatgattga agatgctgaa gcagccggaa
     2581 ttctcaaagc cggagctgaa attattgaac ctacaagtgg taatacaggt atcggactgg
     2641 ctttagtagc agcagtaaaa ggttacaagc taacgcttac tatgcctgaa accatgagcg
     2701 tggaacgcag aaacttattg aaagcattgg gtgcaaatct ggtgttgact cccggagcaa
     2761 caggaatgaa aggtgc
//
LOCUS       DATDNM010000894         3541 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1599240, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000894 DATDNM010000000
VERSION     DATDNM010000894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3541
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1599240"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..322
                     /locus_tag="VI413_14840"
     CDS             137..322
                     /locus_tag="VI413_14840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915952.1"
                     /translation="MNLQRYELQNELAREMVRIKHKKPETLLGFSGWVFIYSIGCKWT
                     CRFTGTWIEISFVPCIG"
     gene            complement(399..1163)
                     /locus_tag="VI413_14845"
     CDS             complement(399..1163)
                     /locus_tag="VI413_14845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915953.1"
                     /translation="MKRICTFLMAVVFLSATVVSAQDAASTTKKEVKKEVSQKLKKDG
                     TVDKRYKQADAKTKEVKALPANAKAKSENAGQKLKKDGTVDKRYKQAEGKAETAGQKL
                     KKDGTVDKRYKQAEGTAKEVKALPENAKAKAENAGQKLKKDGTVDKRYKQAEGTAKEV
                     KAAPENAKAKSENAGQKLKKDGTVDKRYKQAEGTAKEVKAAPEKVSKQAAATGDKLNK
                     DGSPDMRYKENREGLKKGTKHVNKDGTPDKRYNENK"
     gene            complement(1447..1713)
                     /locus_tag="VI413_14850"
     CDS             complement(1447..1713)
                     /locus_tag="VI413_14850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915954.1"
                     /translation="MKVVVIGEPSGAAMETIISAYPRHKIIAEKYINRGDIIGMGPFI
                     GGGNMAIFKTREAAEQFVTEDPFILEGLVKSFVIRDWNDNLLPE"
     gene            complement(1822..2388)
                     /locus_tag="VI413_14855"
     CDS             complement(1822..2388)
                     /locus_tag="VI413_14855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEY6915955.1"
                     /translation="MRKLIAGINMTLDGFCDHTAVIPDEEIHQHYTELLVNADVILYG
                     RITYQLMQYWQPLLKNPSGEKSMDDFALAIDRIPKIVFSHTLKNTEWDSAKLSTESLE
                     EMVSELKQQPGRDILVGSRSLIIQLMKLNLIDEYQLCVHPVVAGSGLPLFENMNDRTV
                     LKLIKTKTFGSGAILLYYEPANENISIS"
     gene            complement(2585..3037)
                     /locus_tag="VI413_14860"
     CDS             complement(2585..3037)
                     /locus_tag="VI413_14860"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6915956.1"
                     /translation="MAKSKLLRMDNVSIVVESLDDAISFFSEIGLTLEGRATIEGEWA
                     GRVTGLGSQRVETAMMVTPDGHSKIELSKFLSPPVVSDHRSAPVNALGYLRVMFTVED
                     IDEMLSRLIKHGAQLVGEVVQYEDSYRLCYIRAADGLLIGLAEELGRK"
     gene            complement(3226..>3541)
                     /locus_tag="VI413_14865"
     CDS             complement(3226..>3541)
                     /locus_tag="VI413_14865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEY6915957.1"
                     /translation="IDNPGMREVGIADTTGGLETTFDKIISFSQNCKFKDCTHTNEIG
                     CAILEAVEKGEVDKNSYENYLKMEREKAHFESTLEERRKKDKEFGKVIKNYKKDIKKN
                     KF"
BASE COUNT          870 a          728 c          637 g         1306 t
ORIGIN      
        1 taagaaacgc gaatcaagca aatgacacga atccacgcaa atcagataaa aaaatcttat
       61 ctaacaagag tcctgcattg aaatgacaaa actcttgtgg gtatttgcgt ttaattgtgt
      121 tatttacgtt caagaaatga acttgcaaag atacgaatta caaaacgagt tggcaaggga
      181 aatggttcgt ataaaacaca aaaaaccgga aacacttttg gggttttccg gttgggtttt
      241 tatttacagt attggttgca aatggacatg ccggtttacc ggtacctgga ttgaaatcag
      301 ttttgtcccc tgcattgggt aagcggccgg aaactaaata taaaaaagag atgaaacaca
      361 tgattcatct cttttttata tttttcagtt accaggaatt atttattttc gttgtaacgt
      421 ttatcagggg taccatcttt gtttacgtgt ttggtacctt ttttaagtcc ttctctgttt
      481 tctttgtaac gcatatctgg tgagccatct ttattcaatt tatcacctgt ggctgctgct
      541 tgttttgaaa ctttttcagg ggctgctttt acctcttttg cagtgccttc agcttgtttg
      601 taacgtttat caactgtgcc atcttttttt agtttttgtc cggcattttc agattttgct
      661 tttgcattct caggagctgc ttttacttct tttgcagtgc cttcagcttg tttgtagcgt
      721 ttatcaactg taccgtcttt ttttagcttt tggcccgcat tttcagcttt tgcttttgca
      781 ttttcaggaa gtgcttttac ttcttttgca gtgccttcag cttgtttgta ccgtttatca
      841 actgtaccat cttttttgag cttttgccct gctgtttctg cttttccttc ggcttgtttg
      901 tagcgtttat caactgtgcc gtcttttttt agtttttgtc cggcattttc agattttgct
      961 tttgcattgg caggaagcgc ttttacttct tttgtctttg catcggcttg tttgtaacgc
     1021 ttgtctaccg tgccatcctt tttaagtttt tgacttactt cttttttgac ttctttttta
     1081 gtcgtactag cagcatcctg tgcgctaact actgtggctg aaagaaatac gacagccatt
     1141 aaaaatgtgc aaattctttt cattgtaagt agtattttta gtttttaata atcggtatgt
     1201 caattattaa atgttttttt ttgacgaaca tacccgcctg atctgctatt ttacttaaaa
     1261 caattgcaaa tatatgcaga aaaataattc tgcaataaaa ttggtgttaa ttttcttatt
     1321 gcattttatt tattaacgaa gaagaactga tgctatttac ttacaataca acaacattgt
     1381 tatttcctct aggtgtaaac acccggttaa tcttcaattt atcaacttct gttttcaagt
     1441 ccaggcttac tcaggaagta agttgtcgtt ccagtcacgt atcacaaacg attttaccag
     1501 gccttcgagt ataaacggat cttcagtaac aaattgctct gctgcctcgc gggttttgaa
     1561 tattgccatg ttacccccgc cgataaaagg gcccatgcca atgatgtccc ctctgttgat
     1621 atatttttct gcaatgattt tatgccgtgg ataagccgat ataattgttt ccattgctgc
     1681 gccggatggt tcgccaatta ctactacttt catattgtgt ttgatttatt gtttcttctt
     1741 ttttcgttgt tcccggtttc gcttaagttt ataagttgcg aacttctgtc gtcagtttca
     1801 aactgatcct aaaaacgcat attagctgat cgatatattt tcgtttgccg gttcatagta
     1861 aagcaatatt gcaccggagc caaaggtttt agtctttatg agtttaagaa cagtcctgtc
     1921 gttcatattt tcaaataatg gcaaaccgct tcctgccaca acagggtgaa cacaaagttg
     1981 gtattcatca atcagattaa gtttcataag ctgtataatt aaactccggc tgccaactaa
     2041 aatatctctg cccggttgtt gcttaagctc tgaaaccatt tcttcaagag attcagttga
     2101 caatttagca ctatcccatt ctgtattctt cagcgtatgc gaaaagacaa tttttggaat
     2161 tctgtctata gccagagcaa agtcgtccat tgatttttcg cctgaaggat tttttagcag
     2221 aggttgccaa tactgcatga gttggtaagt aatcctccca tagagaataa cgtctgcgtt
     2281 aactaatagc tctgtgtaat gttgatgaat ttcttcatcc gggatgactg ctgtatggtc
     2341 gcaaaatccg tcaagtgtca tattgattcc tgcaattagt tttctcatat ttcgtttttt
     2401 agttgtccgt tattttgatt gcttgtggca tgtagcttca caatgaccta acgttttgca
     2461 ctaaaaaatg tttgagttac cggaaccact cctgtatatc tgccgggcca acccaaccgg
     2521 aaagtgctga aacctacttc ccataaggcc cactatatta ttgcatcttt tctgcactcc
     2581 tttttcattt ccggccgagt tcttctgcca gccctatgag aagcccatcc gctgcgcgaa
     2641 tgtagcaaag ccggtatgag tcctcatact gaacaacttc tccaactagt tgagcaccat
     2701 gcttgatcag tctggatagc atttcgtcaa tatcttcaac ggtgaacatg acccgcagat
     2761 agccgagggc attcacagga gcactccggt gatctgatac gacaggagga ctgagaaatt
     2821 tagaaagttc aattttgcta tgtccatccg gtgtcaccat catggcagtc tctacacgct
     2881 gagaaccaag tccggttaca cgaccagccc attctccttc aattgtcgct ctcccttcga
     2941 gtgtcaagcc tatctctgag aaaaacgata tggcgtcatc aagcgattct acaacgatgc
     3001 tgacattgtc catccttagt aatttacttt ttgccatttc ttgattcttt aataagtttc
     3061 tttcaattat gtttccatct ctaagtctct gttgtcataa agcgtgtata ccctcaggaa
     3121 tctacgcctg gcaaccaatg aacatagaac gtgttttagc ggttcggtgt ttgtttagaa
     3181 taactgtttt gcttaatttt gtcgtgtctt taattcaatt cgagttcaga acttattttt
     3241 ctttatgtcc tttttatagt tcttaatcac ttttccaaac tctttatctt tttttcgtct
     3301 ctcttcaagt gttgattcaa aatgagcttt ctcacgttcc attttcaggt agttttcata
     3361 ggaatttttg tcaacttctc ctttttcaac agcttcaaga attgcacaac caatttcgtt
     3421 ggtatgagtg caatctttga atttgcagtt ttgagaaaaa ctgataattt tgtcgaaagt
     3481 tgtttctaat ccgcccgttg tgtctgcaat tcccacttct ctcattccgg gattgtcaat
     3541 a
//
LOCUS       DATDNM010000895         2370 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1385386, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000895 DATDNM010000000
VERSION     DATDNM010000895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1385386"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1002)
                     /locus_tag="VI413_14870"
     CDS             complement(<1..1002)
                     /locus_tag="VI413_14870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915958.1"
                     /translation="MKKNILFAVFATLLLGSLLLAQKSNIAIEKRWEKVNELADKQLP
                     ESAMKEVDAILAQAQKEKNSVQVIKAMVYKMRFTLEKNPDEAPALIHDFEAFTEKNAD
                     PAERALLHSMTAELYAQYYQKDQWAINNRTEVSGFVPEDMKEWTKNIYFDKISKHLEA
                     SLENPAALQKTDALKFSTLLLKGDDSRTLQPTLFDFLSYRRIQLLQNLWQITALKNPL
                     NDPVYFSNASDFSVFKQDSAFEKSTENQVLETYQQLLSFRLKANNVPALLYADLQRLK
                     YARQHSGVENSDSLYLAALSSLERQFADNEAVVEVLAEKANYYLEKQLDIKTFKRNAY
                     "
     gene            complement(1436..>2370)
                     /locus_tag="VI413_14875"
     CDS             complement(1436..>2370)
                     /locus_tag="VI413_14875"
                     /inference="COORDINATES: protein motif:HMM:NF025714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4403 family protein"
                     /protein_id="HEY6915959.1"
                     /translation="GYEWIETPRLNVVGVNVPVTPVASLALSQCDKLISAQIDKSLAE
                     AIDLKKYVTQAWSEVQKPRQVSAENNVWLRITPKDIYVSPFTTTNDKLNLAVALYAQI
                     ESFMGAQPAANTAVALPQFKYVNRPAQQFNLNVGADVTFDKIAELAKKQLQGKTFSQG
                     SKTITITDLSLFGSEGKAVFVADVIGSLKGRIYFTGNLTYNTAKTAVEITEPEFDVKT
                     SNALVKSAGWLLHGMILKQLTPYLTYPVKDDIEKMKVDVNKMLGNYSIMDGVSLQGKL
                     NNLSVTNLSLVPGAVRIQANVKGNIALKVQDLKL"
BASE COUNT          687 a          491 c          411 g          781 t
ORIGIN      
        1 atacgcattc cttttgaatg ttttaatgtc aagttgtttt tccagataat aatttgcttt
       61 ttcagccaac acttccacca cagcctcatt gtctgcaaac tgtctttcaa gggaacttaa
      121 agctgccaga taaagtgaat cggaattttc aactccggaa tgctgcctcg cgtatttcag
      181 gcgttgcaaa tcggcataaa gtaaagccgg aacattattg gcttttaagc gaaaagaaag
      241 taattgctgg taggtttcca atacttgatt ttcagttgat ttttcaaatg cagaatcttg
      301 tttgaaaacc gagaaatcag aagcattaga aaaataaacc ggatcgttca acggattctt
      361 caatgcagtt atttgccata aattctgtaa cagttgtatc cgcctgtaac tcaaaaaatc
      421 aaacaaagta ggttgcaaag tccggctgtc atcgcctttt aaaagcaacg tgctaaattt
      481 caacgcatct gttttttgta aagctgccgg gttctcgagc gaagcttcca gatgtttgct
      541 tattttatcg aaataaatat tctttgtcca ctccttcata tcttccggaa caaacccgga
      601 tacttctgtt ctgttattta ttgcccattg gtctttttga taatattgag cgtatagttc
      661 agccgtcatt gaatgcagca atgcacgctc ggcggggtca gcattttttt cggtaaaagc
      721 ttcaaaatca tgaatcaaag caggagcttc atcgggattc ttttctaacg taaagcgcat
      781 tttatacacc atggctttga ttacctgtac tgagtttttc tctttttgag cttgagcgag
      841 aatagcatca acctctttca ttgccgactc ggggagttgt ttgtctgcca gttcgttcac
      901 cttttcccaa cgtttttcaa tagcgatatt cgatttttga gccaacagta aactgccaag
      961 aagcaatgtg gcaaaaacgg caaataatat gtttttcttc atattggtgt ggtttgtttt
     1021 ttgttaatcg tcagacaaat ataataccaa caattggatt actgaactta taagcggatt
     1081 aatataattt tgattttatt aaaataacgc cataatcacg tttttatgat ataatcgggc
     1141 tacaaaatgg tgctgttggc gacacagcta ctttgtatgc cgtacaaaag ctccatgttg
     1201 gcaacatagc ccttttgtat gtcatacaaa cccttcatgt tcggaacata gccactttgt
     1261 aactctgcaa aacctccatg tgtggaacgg agccatttta tatggcatac aaacctttca
     1321 tgttcggaac atgctattct ttttatatgt ccaaacttat tttatccgac cagtattcac
     1381 aaaaaaacct cacaagcctg ggcctatgag gttttaaata tagaaaatcg gaattctaca
     1441 atttcaagtc ctgtactttc aatgcaatat tacctttcac gttagcctga atacgaaccg
     1501 cacccggaac cagacttaaa tttgtaacag ataagttatt taatttacct tgcagagaca
     1561 ctccatccat tattgaataa ttacccaaca ttttattgac atcgactttc attttttcaa
     1621 tatcatcttt caccggatac gtaagatatg gagtcagttg ctttaaaatc atgccatgca
     1681 ataaccaacc ggcagatttc actaatgcat tcgaggtttt cacatcaaac tcaggttcgg
     1741 taatttcaac agctgtttta gcagtattgt aggtcaaatt tcctgtaaag taaatacgac
     1801 ccttcagtga accaatcaca tcagcaacaa aaacagcttt tccctcactt ccaaaaagcg
     1861 acaaatcggt tattgtgatt gttttgcttc cttgcgaaaa tgtttttccc tgtaattgtt
     1921 ttttagccaa ttcagcaatt ttatcgaaag taacatctgc tcctacgtta agattaaatt
     1981 gttgtgccgg acgattcaca tacttgaatt gtggcaatgc tactgcagta tttgctgctg
     2041 gctgagcgcc catgaacgat tcgatttgag cataaagtgc tacagcaaga tttaatttat
     2101 cgtttgtagt tgtaaatggt gaaacgtaaa tatcttttgg ggttatccgt aaccacacat
     2161 tattctccgc acttacctga cgtggttttt gaacttcgct ccaggcttgt gttacatact
     2221 ttttcaaatc aatcgcttca gccaacgatt tatcaatctg agctgaaatt aatttatcgc
     2281 actgcgaaag tgccagactt gcaacaggcg ttacaggcac atttacaccc acaacattca
     2341 atctgggtgt ttcaatccat tcatatcctg
//
LOCUS       DATDNM010000896         2826 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1385450, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000896 DATDNM010000000
VERSION     DATDNM010000896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1385450"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1389
                     /locus_tag="VI413_14880"
     CDS             <1..1389
                     /locus_tag="VI413_14880"
                     /inference="COORDINATES: protein motif:HMM:NF025714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4403 family protein"
                     /protein_id="HEY6915960.1"
                     /translation="KKQLIFGVITIAALLFSSCKSLQIEKPKESYLPSNLAPAVSELP
                     LQVELDVKKLETSINKKMNGLIFEGSNLSDKDLSVKVWKAQNFTFKINNNVIEYRVPL
                     KLWTRFAWKVEKFGYAVGDNYEANGSIALTYKTTISIDKNWKLISKTTGSGYEWIETP
                     RLNVVGVTVPVTPVASLALSQCDKLISAQIDKSLTEMVDLKKYISQAWGEVQKPRQVN
                     AENNVWLRITPKDIYVSPFTTTNDKLNLAVALYAQIESFMGAQPAANTAVALPQFKYV
                     NRPAQQFNLNVGADVTFDKIAELAKKQLQGKTFSQGNKTITITDLSLFGSERKAVFVA
                     DVIGSLKGRIYFTGNLTYNTAKTAVEITEPEFDVKTSNALVKSAGWLLHGMILKQLTP
                     YLTYPVKDDIEKMKIDVNKMLGNYSIMDGVSLQGKLNNLSVTNLSLVPGAVRIHANVK
                     GNIALKVQDLKL"
     gene            1825..>2826
                     /locus_tag="VI413_14885"
     CDS             1825..>2826
                     /locus_tag="VI413_14885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915961.1"
                     /translation="MKKNILFAVFATLLLGSLLLAQKSNIAIEKRWEKVNELADKQLP
                     ESALKEVDVILAQAQKEKNSVQVIKALVYKMRFTLEKNPDEAPALIRDFEVFTEKSAD
                     PAERALLHSMTAELYAQYYQKDQWAINNRTEVSGFVPEDMKEWTKNIYFDKISKHLVA
                     SLENPTVLQKADALKFSVLLLKGDDSRTLQPTLFDFLSYRRIQLLQNLWQITALKNPL
                     KDPVYFSNASDFSVFKQDSAFKNSTENQVLETYQQLLSFRLKANNVPALLYADLQRLK
                     YAKQHSGVENSDSLYLAALSSLERQFADNEAVVEVLAEKANYYLEKQLDIKTFKRNAY
                     "
BASE COUNT          928 a          479 c          575 g          844 t
ORIGIN      
        1 aaaaaacaac ttatttttgg agtcataacc atagctgcgt tattgttctc atcttgcaaa
       61 tcattgcaaa tcgaaaaacc aaaggagtct tatctgccat caaatcttgc acctgcagtt
      121 tccgaacttc ctttgcaggt agaactggat gtaaagaaac ttgaaacgtc catcaataag
      181 aaaatgaatg gattaatctt cgaaggttca aatttatcgg ataaagattt atcggtaaaa
      241 gtatggaagg cccagaactt tacattcaaa attaataata atgtgattga atatcgtgtt
      301 ccgctgaaac tttggacgcg ctttgcctgg aaagtagaaa aatttggtta tgctgtaggt
      361 gataattatg aggccaatgg aagtattgcg ctgacatata aaaccacaat cagcattgat
      421 aaaaactgga aattgatttc aaaaaccact ggctcaggat atgaatggat agaaacaccc
      481 agattgaatg ttgtgggtgt aactgtgcct gtaacgcctg ttgcaagttt ggcactttca
      541 cagtgcgata aattaatttc ggcgcagatt gataagtcgt tgacagaaat ggtagattta
      601 aaaaaataca tatcacaagc ctggggcgaa gttcaaaaac cacgtcaggt aaatgctgag
      661 aataatgtgt ggttacggat aaccccaaag gatatttacg tttcaccatt tacaactaca
      721 aacgataaat taaatcttgc tgtagcactc tatgctcaaa tcgaatcgtt tatgggcgct
      781 cagccagcag caaatactgc agtagcattg ccacaattca aatatgtgaa tcgtccggcg
      841 caacagttta atctgaatgt tggagcggat gtgactttcg ataaaattgc cgaactggct
      901 aaaaaacaat tacagggaaa aacattttcg cagggaaata aaacaattac cattaccgat
      961 ttgtcacttt ttggtagcga gagaaaagct gtttttgttg ctgatgtgat tggttcactg
     1021 aaagggcgta tttactttac aggaaatttg acctacaata ctgctaaaac ggctgttgaa
     1081 attaccgagc ctgagtttga tgtgaaaact tcgaatgcat tagtgaaatc tgccggttgg
     1141 ttattgcatg gcatgatttt gaaacaactg actccttatc tgacttatcc ggtaaaagat
     1201 gatattgaaa aaatgaagat agatgtcaat aaaatgctgg gtaattattc aataatggat
     1261 ggagtatcgc tgcaaggtaa attaaataac ttatctgtta caaatttaag cttggtgccg
     1321 ggtgcggttc gtattcatgc taacgtgaaa ggtaatattg cattgaaagt acaggacttg
     1381 aaattgtaga attccgattt tctatattta aaacctcata ggctcaggct tgtgaggttt
     1441 tttttgtgag tactggtcgg ataaaataag tttggatata ttaaaaaaat agcatgttcc
     1501 gaacatgaag ggtttgtatg acatacaaaa gggctatgtc gccaacatga agcttttgtt
     1561 tgcttacaaa atggctacgt tccaaacatg gaggttttgc agagttacaa agtggctatg
     1621 ttctgaacat ggaggttttt gtatgccata caaagtagct gtgtcgccaa caggaccatt
     1681 ttgtagccag attatatcat aaaaacgtga ttatggcgtt attttaataa aatcaaaatt
     1741 atattattcc ggcaatatgt tcagttattc aattgttggt attatatttg ccttgcgatt
     1801 aacaaaaaaa caaaccacac caatatgaaa aaaaacattt tatttgccgt ttttgccaca
     1861 ttgcttcttg gcagtttact gttggctcaa aaatcgaata tcgctattga aaaacgttgg
     1921 gaaaaagtaa acgaactggc tgacaaacag ctccccgaat cggcactgaa agaggttgat
     1981 gttattctcg cgcaagctca aaaagagaaa aactctgtgc aggtaatcaa agccctggtt
     2041 tataaaatgc gttttacgct cgaaaaaaat cctgatgaag cgcctgcttt gattcgtgat
     2101 ttcgaagttt ttaccgaaaa aagtgctgac cctgccgaac gtgccttgct gcattccatg
     2161 acggctgaac tatacgctca atattatcaa aaagaccaat gggcaataaa taacagaaca
     2221 gaagtatccg ggtttgttcc cgaagatatg aaggagtgga ctaagaatat ttatttcgat
     2281 aaaataagca aacatttggt agcttcgctc gaaaatccaa ctgttttgca aaaagccgat
     2341 gcgttgaaat ttagtgtgtt gcttttaaaa ggcgatgaca gccggacttt gcaacccact
     2401 ttgtttgatt ttctgagtta caggcggata caactgttac agaatttatg gcaaataact
     2461 gcattgaaga atccgttgaa agatccggtt tatttttcga atgcttctga tttctctgtt
     2521 tttaaacaag attctgcttt taaaaattca actgaaaatc aggtgcttga aacttaccag
     2581 caattacttt cttttcgctt aaaagccaat aatgttccgg ctttacttta tgccgatttg
     2641 caacgcctga aatacgcgaa gcagcattcc ggagttgaaa attctgattc actttatctg
     2701 gcagctttaa gttcccttga aagacagttt gcagacaatg aggctgtggt ggaagtgttg
     2761 gctgaaaaag caaattatta tctggaaaaa caacttgaca ttaaaacatt caaaaggaat
     2821 gcgtat
//
LOCUS       DATDNM010000897         2668 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_639265, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000897 DATDNM010000000
VERSION     DATDNM010000897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_639265"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..419)
                     /locus_tag="VI413_14890"
     CDS             complement(<1..419)
                     /locus_tag="VI413_14890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEY6915962.1"
                     /translation="MNLSNLFNQKPYKIGIALSGGGIKGLCHAGVLKALEEHGIKPDV
                     VSGVSAGAIVGALYADGYSPDEIAKLFEDISFRRMTQIQIPDGGFFKIDSFQRFLHKN
                     LHAKTFEELKTPLRVVATDLDKGQIVTFSRGKLLERV"
     gene            complement(509..1363)
                     /locus_tag="VI413_14895"
     CDS             complement(509..1363)
                     /locus_tag="VI413_14895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013446102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEY6915963.1"
                     /translation="MNTKIPAYMYEKNNIVRLILFTATFALLFINIFKPFGSRDWYKI
                     SDFKFFVFASLIVLVGMLVVVLSRLIMLAFVKKNEVSYLQYGIWVVAEILAMSMFYAL
                     FTKFIPKENAHRDFLQIYSDSTLHAALILLLPYAILWLYFSWRDKNHMLERMKQEDRL
                     VELPKKNLIAFLDEKGEFKISIVLENLLFVDSADNYATIHYLNKSKLSHFLIRNSLKW
                     MEENLTKDTPLVRCHRSYIVNLDKVKVLRKTKDGIFLELDALNTPDVPVSKTYYERVM
                     TKFSKYSV"
     gene            1566..>2668
                     /locus_tag="VI413_14900"
     CDS             1566..>2668
                     /locus_tag="VI413_14900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019540051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6051 family protein"
                     /protein_id="HEY6915964.1"
                     /translation="MHKHMNYSQRHHELNAQFQLGINIHLAESDIEIRFYSFKSVPLS
                     AKDEKVIANPTDETISENLAFIYPVFAPRKTRKSTNAILLMHGLYERNWSKYLTWAEY
                     LCEKTGKPVILFPIAFHMNRSPLTWSNPRALQPLMDFRRKLNGDDRTLSFANVALSER
                     ISEKPIRFYSSGRQSMFDLTQLFTEIKSGLHPLFAENTQIDIFAYSIGAFLSQITVMA
                     NPENLFSDSKLFMFCGGSIFSSMSGESRSIMDKTAFSRLLNYYMTDFATEAAEKSVHD
                     KGFESFLSMISPEQNQSEREGFFKRLGNKVGGISLLKDHVIPYDGVVKALGTECAKRC
                     IRLLDFSFPYTHENPFPVGNRQETPIVDASFTS"
BASE COUNT          852 a          583 c          491 g          742 t
ORIGIN      
        1 attacccttt cgagcaactt tcctctagag aaagtgacaa tctgcccttt gtcaaggtct
       61 gtcgccacaa cacggagcgg ggttttcaat tcttcaaaag tctttgcatg cagatttttg
      121 tgcaaaaagc gctggaatga atcaatttta aagaaaccgc catcaggaat ctgtatttga
      181 gtcatccggc ggaaactgat gtcttcaaat aattttgcaa tttcatcggg agagtaacca
      241 tctgcataca acgcaccaac tatggcgccg gcacttacac ccgacacaac atctggcttt
      301 attccatgct cttcaagagc tttcaacact ccagcatggc acaatccttt aatgccgcca
      361 ccactcagcg caataccgat tttgtaaggc ttttgattga aaaggtttga tagattcatc
      421 ttagcgacta gtttattgga tattagttga ttagtttatc aatccgcgag gttggagttt
      481 ctggtccaac catctaatct acaaactact aaacggaata tttcgaaaac ttggtcatta
      541 cacgttcata gtaggttttc gaaaccggaa catccggagt attgagggca tcgagttcca
      601 gaaaaatccc atctttcgtt ttacgaagaa ctttgacttt atccagatta acgatgtatg
      661 aacggtgaca acgaacaagc ggggtatctt ttgtcagatt ttcttccatc catttcaacg
      721 aattacgaat gaggaaatgc gacaatttgg atttattgag gtaatggata gtggcataat
      781 tatccgcaga atcgacaaac aaaaggtttt ccagcacaat agaaatttta aattctcctt
      841 tttcgtccaa aaatgcaata aggtttttct ttggaagttc aaccaaccga tcctcctgtt
      901 tcatccgttc caacatgtgg tttttatcgc gccacgagaa gtacaaccac aaaatagcat
      961 acggcaataa aaggattaag gctgcatgca atgttgaatc ggaataaatc tgcagaaaat
     1021 cacgatgtgc attttctttt ggaataaatt tagtaaacag ggcataaaac atagacatgg
     1081 ccaaaatttc agccaccacc caaatgccat attgtaagta agatacctca tttttcttga
     1141 caaaagcaag cattattaac cggctgagaa ccactaccag catgccaacc aagactatca
     1201 gactagcaaa aacgaagaat ttaaaatcag aaattttata ccagtcacgg gatccgaaag
     1261 gcttaaatat gttaataaaa agtagggcaa acgtagctgt aaacaatatc agacgaacga
     1321 tattattttt ttcatacatg taagccggaa tctttgtatt catgtttttc tgtttctaaa
     1381 aaaagaactc acaaaagtat agtattctcc tcaaacaaac aaatagcttt acccctgcac
     1441 caatttattt caccccgtta ttttattatt aaccccaaat aacagcaatt aatccctaac
     1501 cgttattaaa ctcaactctt tgttggaaat ggaaattctg aacgcttatt ttgcaatcaa
     1561 aacaaatgca taaacatatg aattacagcc aacgacatca cgaactgaat gcgcagtttc
     1621 agctgggcat aaatatccat ttggcagaat cggacattga aattcggttt tattcgttta
     1681 aaagcgtgcc tctatcggca aaagacgaaa aagtcattgc caatccgact gatgaaacta
     1741 tttccgaaaa tctggcattt atatatccgg tttttgctcc ccggaaaaca agaaaatcaa
     1801 ccaacgctat tctgctaatg catggattgt atgaacgaaa ctggagcaaa taccttacct
     1861 gggcagaata tctatgcgaa aaaacaggca agccggtcat cctttttccc attgcctttc
     1921 acatgaaccg gtctcccctc acctggtcaa acccacgcgc cttgcaacct cttatggatt
     1981 ttcggcgaaa actgaatggt gacgaccgca cgttgagttt tgcaaatgtg gcgctgagcg
     2041 aacgaatcag cgaaaaaccc atccgattct acagttccgg acgccaaagc atgtttgatc
     2101 tcacccagtt attcaccgaa ataaagtcag gcttgcatcc cttatttgcc gaaaataccc
     2161 aaatcgatat ttttgcatac tcaatcggcg cattcctttc gcaaataacc gtgatggcca
     2221 atccggaaaa tctgttctcg gattcaaaac tgttcatgtt ttgcggtgga agcattttca
     2281 gctccatgtc cggtgaatct cgaagtataa tggacaaaac ggctttttca cgactgctca
     2341 attactatat gactgacttt gcaactgaag cggcagaaaa atcggtacac gacaaaggct
     2401 tcgaatcatt tctgagcatg atttcgccag agcaaaacca gtcggaaaga gaaggttttt
     2461 tcaaacggct ggggaataaa gtcggaggaa tttccctgct gaaagatcat gtaattcctt
     2521 acgacggagt tgtaaaagca ctgggtacgg aatgcgcaaa gagatgtatc agactacttg
     2581 atttcagctt tccatatacc catgaaaatc catttccggt tggcaacagg caagaaactc
     2641 caattgtaga tgcatcattt acaagcat
//
LOCUS       DATDNM010000898         2880 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_639310, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000898 DATDNM010000000
VERSION     DATDNM010000898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_639310"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..621
                     /locus_tag="VI413_14905"
     CDS             <1..621
                     /locus_tag="VI413_14905"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6915965.1"
                     /translation="LINIVLIVLSIPFCFYFANERANIIIGLLIMAVQYLLVFLYQTF
                     ADIQKTQPEPLQPELALISTEPIYGKALQEQDPIDDKKLTRLDDVQAEEYLRALQQFM
                     TLSRPYMGDECSLQSVAHQTGIPYYYISHILNVKRKQKFADFVNEYRINEAKKLLCSP
                     KSASATIESIAIECGFGSKSAFHRAFKKFNHNLTPTEFQRQNKPVC"
     gene            1211..1825
                     /locus_tag="VI413_14910"
     CDS             1211..1825
                     /locus_tag="VI413_14910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEY6915966.1"
                     /translation="MKKVKALLDFIQLSVVTKIAFYRSVLAHLTGNETFPTPDVPLAE
                     VKTAIDALDTAYQASLDGSHTAVSAMHDAEDKADALFRTLVAYVNRIADGNETQILSS
                     GFHVSKQPGTVQKPELDAQNGDNSGSVWLVARAVDKAGAYIWQMAKDGIPATDEGWTT
                     IGHSTQSYYQLTGLTPGGKYYFRVVAITPTGQSDYTAPVAKIVV"
     gene            2287..2793
                     /locus_tag="VI413_14915"
     CDS             2287..2793
                     /locus_tag="VI413_14915"
                     /inference="COORDINATES: protein motif:HMM:NF024788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLDc N-terminal domain-containing protein"
                     /protein_id="HEY6915967.1"
                     /translation="MKRFLIYFTIALCFISCGSKDKKITQKEFERLFAQDSIGSIRLY
                     SGENEAKIVMKAFHGNSSVTYILPIESARSFEDTFTILRYKMEAQKIHPSYCMVKSDG
                     TEYTPLIFRLFFLCSFILFLIVIIDVLKSRFETATDKLIWFLVLLLPLIGPILYVFIG
                     RKQKLKRN"
BASE COUNT          937 a          597 c          530 g          816 t
ORIGIN      
        1 cttattaata tcgttttaat cgttttgtca attccttttt gtttttattt tgccaacgaa
       61 cgcgccaata ttattattgg tttgctgata atggctgtgc aatatttgtt ggtatttttg
      121 tatcaaacct tcgcggatat acaaaaaaca cagcccgaac ccttacagcc tgagttagca
      181 cttatttcta ccgaacctat ttatggtaaa gcactccagg aacaagaccc tatcgacgat
      241 aagaaactta cccggctgga cgatgtgcag gccgaagaat atctccgggc gttgcagcaa
      301 tttatgaccc tttcccgccc ttatatgggc gatgaatgca gcttgcagtc cgtggcccac
      361 caaacaggga taccttatta ctatatttcg cacatactga atgtgaaacg aaaacagaag
      421 tttgccgact ttgtaaacga ataccgtata aacgaagcca aaaaactctt atgttcccct
      481 aaatcagctt cggccactat cgaatcgatt gccatagaat gcggttttgg ctccaaaagt
      541 gcattccatc gtgcgtttaa aaagttcaat cacaatctca ctcctaccga atttcagcgg
      601 cagaacaaac ctgtctgcta aatttcttca caatttctcc caaaactttg tagcgttttc
      661 cgaaaacgcc acaaaattta tataacttaa taatacattt gcctatggtt aacgtaacta
      721 atgccggaga tgagcgaatt tcctgcaaca attgtcctaa attcaaaaat cattttccaa
      781 tttcgtaaaa tacccgtaga agcccggata atgactttcc tactttctat cgggtaaaac
      841 cgatactgaa aaatcatttt ccgaccttgg ataatccttt ttcaatttcg gaaaatacct
      901 gaacaatctt ctatcgggaa gatagaagat tggaaaatca ttttccaatc ttcttcaggt
      961 attataggag ttttgaaaat cattttccaa tgttctgcag gtagtgtagc aatttggaaa
     1021 atagttttcc aacatttttt agttagtcag ggatatcaga gttccaactc cgacaaaacc
     1081 cggacagacc tggaagccta tcctcctgta agggagcagt aaacgagacc cgcaatcgaa
     1141 tccattcaac catttattga taataaaccc caaactaacc gatttattca ttttaaaaat
     1201 tgaagagaac atgaaaaaag taaaagcatt attggatttt atccaactgt cggtagtaac
     1261 aaagattgca ttctaccgca gtgtacttgc ccaccttacg ggcaacgaaa cttttcccac
     1321 accggatgta ccactagccg aggtaaaaac agccattgat gcattggata ctgcctatca
     1381 ggcctcactg gacggtagcc atacagcagt atcggccatg cacgatgccg aagacaaagc
     1441 cgatgccctg tttcgcacat tggtagccta cgtcaaccgc attgccgatg gcaacgaaac
     1501 acaaattctg agcagcggtt ttcatgtgtc caaacaaccc ggtacggtac aaaaaccaga
     1561 gctcgatgcc caaaatggcg acaactccgg cagcgtatgg ctggtagccc gtgcggtgga
     1621 caaagcaggc gcttatatct ggcaaatggc caaagacgga attcccgcta ccgacgaggg
     1681 atggactacc ataggccaca gcacccagtc ttattatcag ttaacaggcc ttacccccgg
     1741 tggtaagtac tacttccgcg tggtagccat cacacccacc ggccagagcg attacaccgc
     1801 tccggtagct aaaatagtgg tgtaaacacg gggaattagc aataaatggt tgaaaagatt
     1861 tttttaagaa gcaagagata aattagtcag gaacaaaaat cattaaatac acaatatatc
     1921 atggataaaa ttattttcac gttataccca ttattgttat tcgtattagc tattataata
     1981 ccagtaagta ttatctattt tctatacaaa tggatgaagg ttaatctgga attaaaacga
     2041 caacaaatgg agttgcttga ggaaatactt tcggaattga aggaaataaa gaaataaaaa
     2101 aaagaagaaa ggttattgcc atacgatgca attcatgcgg cagctcgagg agaaaaaagg
     2161 atacctatat ttttcagtta ttgcagaccg gacaagatat aatgcacccc tttacaaaac
     2221 agtaaaaaaa gaaaagtaaa taacccccta aaagactatt atcaaactaa taaaaaataa
     2281 tacaatatga aacgatttct catttatttt accattgcac tatgttttat ctcatgcggt
     2341 tcaaaggaca aaaagattac tcaaaaggag ttcgaacgac tatttgcgca ggattccatt
     2401 gggtctatcc gtttatactc cggtgaaaat gaagctaaaa tagtgatgaa agcatttcac
     2461 ggaaatagta gtgtaactta tattctgcct attgaatcgg caagatcatt tgaagataca
     2521 tttactatac tcaggtacaa aatggaagct cagaaaattc atccttctta ctgtatggtg
     2581 aagtcggatg gaacagaata tacaccctta atattcaggt tattctttct ttgttccttc
     2641 attttgtttt tgatagtaat tatagatgtt ttaaagagca gatttgaaac tgcaacagat
     2701 aaattaatat ggtttttggt tttattactt cctttgatag gtccaattct atatgttttt
     2761 ataggcagaa agcagaagct aaagagaaac taaactatac attgttctgc cgtgtgtact
     2821 tcctgcccac tcgtaccggt ttttgtaacc caagcgacta agctgagcgg taatcggtgt
//
LOCUS       DATDNM010000899         2500 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_639359, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000899 DATDNM010000000
VERSION     DATDNM010000899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_639359"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2500)
                     /gene="sprA"
                     /locus_tag="VI413_14920"
     CDS             complement(<1..>2500)
                     /gene="sprA"
                     /locus_tag="VI413_14920"
                     /inference="COORDINATES: protein motif:HMM:TIGR04189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein SprA"
                     /protein_id="HEY6915968.1"
                     /translation="VLGVSYEYTYGGQVYQVGEFSTDNITPPNALIVKLLKSTAQSPQ
                     LAMWDLMMKNVYDLGAMDIQKENFKFNIVYRNDSVGTDMQYITEGDSTKNKILLRVMN
                     LDNLDSKNAPNPDGKFDFVEGYTVLPTSGRIIFPVLEPFGEHLAKAIDHNFNPDIPNS
                     KPSDLAKNYIFQELYDSTLVVAQEASEKNKFKLVGEYKASSGSEIRLNAMNIPRGSVT
                     VTAGGATLVENVDYTVDYTMGTVSILNRSLIESGTNIDVKLENQSMFSMQRKSLVGTH
                     LEYKFNKDFSLGGTIMHLSELPLTTKVNTGSEPISNTIWGLNTSWRTESQWLTNVLDK
                     LPFVNATKPSTVALNAEFAQLIPGHSKVVSKDGLAYIDDFESTKTTIDIHYPVNWYLA
                     ATPYNPFPKADYASFPEAAKSDNIEYGKNRALLAWYYVDPLFNENRTTTPAHLRNNPD
                     ATSNNLTRSVLEQEIFPNRQINITKSPRMTIMNLSFYPKERGPYNLDVDGMNPDGTLK
                     NPTQRWGGIMRKLDATDFETSNIEYIEFWMMDPYVNDGMTSDKTGDLYFNLGDVSEDI
                     LKDGKKAFEHGLPIDGDVTKTDTTVWGRVPKIQSTVTAFSGDRKNQDVGLDGLTNESE
                     FLYPTYKDYVDKVKAKITDPAVLQHMENDKFSPLRDPAGDNYHFYRGSDYDTEKLPIL
                     MRYKHYNGTEGNSPDANDITEKYSTTSTSLPDMEDVNGDNTLNEYEKYFQYRVRINPD
                     SMEIGKNHITDIVTSSVTHDNNKTDQVKWYQFKIPIREYDDKIGSIRNFKSIRFIRMF
                     MTNFQDSATLRFATLDLVRGEWRNFNKKLHADDKL"
BASE COUNT          708 a          534 c          449 g          809 t
ORIGIN      
        1 gaagtttatc atctgcatgc aattttttat taaaatttct ccattcgcca cgcaccaagt
       61 caagagtcgc aaaacggaga gttgcagaat cttggaaatt agtcatgaac atccgaataa
      121 aacggataga cttaaaatta cggatgctcc ctattttatc atcatattca cggattggaa
      181 ttttaaactg ataccattta acctgatctg ttttgttatt atcgtgcgtt acacttgaag
      241 ttacaatatc cgtaatatga tttttcccaa tctccattga gtctggattt atacgaacgc
      301 gatactggaa atatttttca tattcattaa gcgtgttatc accatttaca tcttccatat
      361 cgggcaacga agtggatgtt gttgaatatt tttccgttat atcatttgca tcgggcgaat
      421 tgccttctgt tccattatag tgtttgtagc gcatcaaaat cggcaacttc tcagtgtcat
      481 aatccgagcc ccggtaaaaa tgataattat cgcctgcagg gtctctcaac ggagaaaatt
      541 tgtcattctc catgtgctga agcacagcag gatctgtaat ttttgcttta accttatcta
      601 catagtcttt gtatgtagga tacaaaaatt cactttcatt tgtcaaacca tccaaaccga
      661 catcctgatt tttacggtca ccggaaaagg cagtaactgt tgattgaatt ttaggtacac
      721 gtccccacac agttgtatct gttttggtta catcaccatc aataggcaaa ccatgttcaa
      781 atgctttttt tccatctttc aaaatatctt cgcttacatc ccccagattg aagtataaat
      841 cacctgtttt atctgaggtc atcccatcgt ttacatacgg atccatcatc caaaattcaa
      901 tatattcgat atttgaagtt tcgaaatcgg tagcatccag cttgcgcatg attccacccc
      961 aacgttgagt tggatttttc aatgttccat caggattcat tccatctaca tccaggttat
     1021 acggaccacg ctctttaggg tagaacgaca ggttcataat cgtcatacgc ggcgatttgg
     1081 taatattaat ttgtctgttc gggaaaattt cctgctcgag cacacttcgc gttaggttat
     1141 tcgatgttgc atccggattg ttgcgtaagt gggccggagt tgtagttctg ttttcgttaa
     1201 aaagcggatc gacataatac catgccaaca atgcacggtt ttttccatat tctatattat
     1261 cacttttggc agcttcagga aaagaagcat aatcagcttt agggaaagga ttgtacggag
     1321 tggcggccag ataccagttt accggataat gaatatcaat tgtagttttg gttgactcaa
     1381 aatcgtcaat atatgccaat ccatctttac tcaccacttt cgagtgtccg ggaattaatt
     1441 gtgcaaattc ggcattcagg gcaacagttg atggtttggt tgcatttaca aacggtaatt
     1501 tatccaacac gtttgtaagc cattgcgact cggttctcca cgacgtattt aacccccaaa
     1561 tggtatttga aataggctca cttcctgtat ttactttagt tgtcagtggt aattcagata
     1621 ggtgcataat ggttccaccc aaactgaaat ccttattaaa cttatattcc aaatgcgtac
     1681 caaccaacga tttacgttgc atgctaaaca tggattgatt ttccagtttt acatcgatat
     1741 tggttccgga ttctattagc gacctattca atatcgatac agttcccatg gtataatcaa
     1801 cagtataatc cacattttca accaaagtag caccgcccgc agttacagta accgatccgc
     1861 gtggaatatt catagcattc aaccggattt ccgagcccga cgaagcttta tattctccaa
     1921 caagcttgaa tttatttttc tcgctggctt cctgtgctac cactaaagta gaatcgtata
     1981 actcctgaaa aatataattt ttagcaagat ctgacggttt tgaattaggg atatctggat
     2041 tgaaattatg atcaattgct ttagccaaat gctcgccaaa cggttccaac acaggaaaaa
     2101 tgattcttcc acttgttgga agaacggtgt acccttccac aaagtcgaac tttccatcgg
     2161 gatttggtgc atttttcgaa tccagattat caaggttcat aacccgaagc aggatcttgt
     2221 ttttagtaga atcaccttcg gtaatatact gcatatcagt cccaacagag tcattccggt
     2281 aaacgatatt gaatttaaaa ttctctttct gaatatccat tgcacccagg tcgtatacgt
     2341 ttttcatcat caaatcccac attgccagct gtggtgattg agctgtactt ttcaacaatt
     2401 tcactatcaa tgcattggga ggagttatgt tatcggttga gaattctccc acctgataca
     2461 cctggccgcc ataggtatat tcatacgaca caccaagcac
//
LOCUS       DATDNM010000900         2021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_959183, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000900 DATDNM010000000
VERSION     DATDNM010000900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_959183"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..577)
                     /locus_tag="VI413_14925"
     CDS             complement(<1..577)
                     /locus_tag="VI413_14925"
                     /inference="COORDINATES: protein motif:HMM:NF021942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008239 - dipeptidyl-peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0070009 - serine-type aminopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S46 family peptidase"
                     /protein_id="HEY6915969.1"
                     /translation="MKKLLIVMLSLCIFAGVKADEGMWMLPLIQKLNIQKMSGMGCTL
                     SADEIYSDKSVSLKDAVIIFGNGCTGVVVSNEGLVFTNHHCGYEAIQQRSSVEHNYLK
                     DGFTAKKSEDEIPCPGLTVKFLVRVQDMTDRILSQLPDTLLGKARVNKQDSIIEAIET
                     EVTKDTHYTARLKPFYSGNEFYLFVYEEFSDI"
     gene            complement(767..961)
                     /locus_tag="VI413_14930"
     CDS             complement(767..961)
                     /locus_tag="VI413_14930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915970.1"
                     /translation="MNSNININVKLKYSSPEIERVELDNEISLTLDSNNPSPGPGEPG
                     YVGSLAPEYFNADPFKANIG"
     gene            complement(1070..>2021)
                     /locus_tag="VI413_14935"
     CDS             complement(1070..>2021)
                     /locus_tag="VI413_14935"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HEY6915971.1"
                     /translation="CVNWTSDIANAANILTTIWYRTQTAGVYAFHTYNSSGGIGTPIG
                     VTGVIPPMQAFWVRVNAGGGTLTLNNSMRSHGSVSNPLKVRSATNLQQKILRLQVSNG
                     TNNDEAVVYFNPEASDSFDTFDSPKMTNGNNAIPEIYTLAGIEEVAINGLGTLNFNKE
                     LPLGFSTKETNYFTIKASQICNFAPEERVLLKDNFLNKEQDLTDEASYTFTSDPTNST
                     NRFSLIFRTQSTVTDMDKNIEEQDIDIYKNTNNQIVVRCIATITNKTSVYVYNSLGEL
                     LVSKQLTDNETVIQTPNNSGVYMIKVVTAKKNTTKKVVLK"
BASE COUNT          558 a          365 c          397 g          701 t
ORIGIN      
        1 gaatatctga aaactcttcg tatacgaata aataaaattc gttacctgag taaaatggtt
       61 tcaggcgtgc tgtatagtgg gtgtctttgg ttacttcggt ctcaattgcc tcgatgattg
      121 aatcctgttt gtttacacga gctttgccca gcaacgtgtc cggcaattgt gacaggatac
      181 ggtcggtcat gtcctgcacg cgtaccagaa atttgacagt aagtcccgga catgggattt
      241 cgtcttcaga tttcttggcg gtaaatccat ctttcaggta attatgttct actgaactgc
      301 gttgttggat ggcttcataa ccacaatgat gatttgtaaa cacaagaccc tcattggata
      361 ccaccacgcc tgtacaacca ttgccgaaaa taattacagc atctttcagg cttacgcttt
      421 tgtcgctgta aatttcgtcg gcagaaagcg tgcagcccat gccactcatt ttttggatat
      481 tcagtttttg aatcagaggc aacatccaca tgccttcgtc ggcttttact cctgcgaaaa
      541 tgcagagcga aagcattaca ataagtagtt ttttcattaa agaatttttg aatagggagt
      601 tatcattaaa gtaatcagga gaataaacta ctcatgttac tgtatgtctt tttgcatata
      661 aatgcagtac aaatgtagga aataaatttt agataactag acgagggtta aaataaaaaa
      721 aatccccggg ttatgaggat ttttttttga gtgtattgtc ttttgtttag ccaatatttg
      781 ctttgaatgg gtcggcatta aagtactcag gggctaatga gccaacgtaa ccaggttctc
      841 ccgggccagg ggatggatta ttagaatcaa gcgtcaatga aatctcattg tcaagttcta
      901 cccgctcaat ttccggggag gagtatttta gcttcacatt gatgttgata tttgagttca
      961 tgttgtctgg caaattttat ttgacaatcg catagctaaa tatcatcgaa taagtctttg
     1021 attacttctc aaattctatt gcaatgaatt tgtcacaaat ttaatgaatt tattttaata
     1081 ctactttttt tgtcgtgttt tttttagcag ttacaacctt tatcatataa acccctgaat
     1141 tgtttggtgt ctggataact gtttcgttgt ctgtgagttg tttggatacc aataattcac
     1201 ctaaagaatt gtaaacatat actgaagttt tattcgtgat agtagcgata catcgaacta
     1261 caatttgatt gttggtgttt ttataaatgt caatatcctg ttcttctatg tttttatcca
     1321 tatcagtaac tgttgactga gtcctgaaaa ttaaactgaa acgatttgtg gaatttgttg
     1381 gatctgaagt gaaagtatat gatgcttcat ctgtaagatc ttgctcctta ttcaaaaaat
     1441 tatctttcaa taataccctt tcttcgggag caaaattgca tatttgactc gctttgattg
     1501 taaaataatt tgtttctttc gtgctgaaac ccaacggtaa ttctttgttg aaatttaatg
     1561 tgcctaatcc attaatagcc acttcttcta ttcctgccaa tgtgtaaatt tcgggaatgg
     1621 cattgttgcc gttagtcatt ttaggagaat cgaaggtatc gaagctatca gaggcttctg
     1681 ggttaaaata gacaactgct tcatcattat ttgtaccatt tgaaacctgt aagcgtaata
     1741 ttttttgttg caaatttgtt gcgctccgaa cttttaaagg gttcgataca cttccgtggg
     1801 agcgcatgct gttgttgagt gtaagtgttc ctccacctgc attaacacgc acccaaaacg
     1861 cttgcattgg aggtatcacc cctgttactc caataggggt gcctattcca ccagatgaat
     1921 tgtaagtatg gaatgcatac acaccggctg tttgagttct gtaccagatc gttgtaagta
     1981 tattggcggc atttgcaata tctgatgtcc agttcacgca t
//
LOCUS       DATDNM010000901         2210 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_211399, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000901 DATDNM010000000
VERSION     DATDNM010000901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2210
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211399"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..682
                     /gene="tpiA"
                     /locus_tag="VI413_14940"
     CDS             <1..682
                     /gene="tpiA"
                     /locus_tag="VI413_14940"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007368740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEY6915972.1"
                     /translation="SELVAKADAKNVVVVLGTPFTHITSVVAAVDTKLVGVAAQNCAA
                     EAKGAFTGEVSAAMVKSTGAEYVILGHSERREYYGETSEILNKKVALALANGLTPIYC
                     CGEALAIREANEQNAYVKTQLEETIFNLSVEDFSKLAIAYEPIWAIGTGVTASTAQAQ
                     EMLAFIRGLIAEKFGKAVAEETSILYGGSCNAKNAPELFAQPDIDGGLIGGASLKVAD
                     FKAIIDAF"
     gene            816..1421
                     /locus_tag="VI413_14945"
     CDS             816..1421
                     /locus_tag="VI413_14945"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006841655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEY6915973.1"
                     /translation="MLLKIYDTNPNPAEIRRVAEVLRKGGIIIFPTDGVYAFGCSIFN
                     NTGVEFIAKLKEHDMRKANLSFVCYEMSQISEYAKMDDTAFKLMKRNLPGPFTFILNG
                     SSKLPKLFKNKKTVGIRMPDNIIPLELVRELGNPIMASSIFTDEKTTEYITDPELIEE
                     KYGHQVDLVIDGGMGGLQHSTIVDCTGDEPEVIRQGAGELV"
     gene            1520..1999
                     /locus_tag="VI413_14950"
     CDS             1520..1999
                     /locus_tag="VI413_14950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915974.1"
                     /translation="MKFVLRWSVVLISFLFFGCSTNDEVELKKYSMVYIVRNNGDATL
                     LSIAADSYTYFPIEKVTEWIGAGKNNYESTYDYDREHYLYSCDSIILKTENKVYNGCY
                     GGLKVHLIFDKAPNYVIRDYFIANDTIRNSLDCTVRFSWPDDSVKYRYTEIVYAKLK"
     gene            complement(2015..>2210)
                     /locus_tag="VI413_14955"
     CDS             complement(2015..>2210)
                     /locus_tag="VI413_14955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEY6915975.1"
                     /translation="SEKDVTVAFTDFTDFSLAITFVYFIQKNADPMEATSLVNTEILQ
                     AFNAAGLQFAYPTQTVYLEK"
BASE COUNT          651 a          384 c          491 g          684 t
ORIGIN      
        1 aagcgaatta gttgcaaaag ctgatgcaaa aaatgtagtt gtagttcttg gaactccttt
       61 tacacacatt accagcgttg ttgccgctgt tgacactaaa ttagttggtg ttgctgccca
      121 gaactgtgct gctgaagcca aaggcgcttt cacaggcgaa gtttcggctg ctatggtaaa
      181 atcaaccggt gctgaatatg ttattttagg tcactctgaa cgtcgcgaat attatggcga
      241 aaccagcgaa atcctgaata aaaaagtggc tttggccttg gcaaacggat taactccgat
      301 ctattgctgt ggtgaagctt tggctattcg cgaagctaac gaacaaaatg catacgtaaa
      361 aactcagctc gaagaaacca ttttcaacct gagcgttgaa gatttctcga aactggctat
      421 tgcttacgaa ccaatttggg ccatcggaac cggagtaact gcttcaactg cacaggctca
      481 ggaaatgctg gctttcattc gtggtttgat tgctgaaaaa tttggaaaag ctgttgctga
      541 agaaacttct atcctttacg gtggtagctg caacgctaaa aatgctcctg aattgttcgc
      601 tcaacctgat atcgacggtg gtttgatcgg tggcgcttca ttgaaagttg ccgacttcaa
      661 agctattatc gacgcttttt gattataacc gcttaggcac taagatcact tagaagcact
      721 gagtttgatt tatttacaaa ggcacttggc tcactttggt tacacaatgc aaattttgtg
      781 tatctttgtg tcctaagtgc cttcgtgtta taagaatgtt actcaaaatt tacgatacca
      841 atcccaatcc tgccgagata cgtcgagtgg cagaagtgtt gcgtaagggc ggaatcatta
      901 tttttccgac cgatggtgta tatgcgtttg gttgcagtat ttttaataac accggagtag
      961 agtttattgc gaaattgaaa gagcatgata tgcggaaggc taatttatcg ttcgtttgtt
     1021 acgaaatgag ccaaataagc gaatatgcca aaatggacga taccgcgttt aaactgatga
     1081 agcgaaacct gccgggtccg tttactttta tcctaaacgg cagcagtaag ctcccaaaac
     1141 ttttcaaaaa caaaaagact gtcgggattc gtatgccgga taatattatt ccgttggagc
     1201 ttgtgcggga gttgggtaat ccgataatgg ccagttccat ttttaccgac gaaaaaacga
     1261 cagaatatat taccgatccg gaattgattg aagaaaaata cggccatcag gtggatttgg
     1321 tgattgatgg tggcatgggc gggttgcaac actccaccat tgttgattgc accggtgacg
     1381 aaccggaagt gattcgccag ggagcagggg agttggtgta atcttagtgg tttatttaaa
     1441 gaatttaaat ctgaacgttc ggttaaattt attgttcgcg tgatttatgt ctcctataat
     1501 taaaattgtt ctcaaacgta tgaaatttgt gctaaggtgg tctgttgtac taatatcttt
     1561 tttgtttttt ggctgtagca ccaacgatga agttgagctg aaaaaatact ctatggttta
     1621 tattgttagg aataatggcg atgcaacgtt gttgtcgatt gctgcggatt catataccta
     1681 tttcccaatt gagaaagtaa cagaatggat tggggctggt aaaaacaatt atgaaagtac
     1741 ctatgactat gatagagagc attatttgta ctcttgcgat tctattattt tgaaaactga
     1801 aaataaggtt tataatggat gttatggagg attaaaagta catttgattt ttgataaagc
     1861 tccaaattac gtaattcgcg attattttat tgccaatgat accattcgta attcattgga
     1921 ttgtaccgta aggttttcat ggccagacga ttctgtaaaa tacagatata ctgaaatagt
     1981 atatgcgaaa ctaaaatagt atatacaaaa taatctattt ttccaaataa accgtttgcg
     2041 ttggatatgc aaattgcagt ccggctgcat tgaatgcctg gagtatttcc gtattaacga
     2101 gcgatgttgc ttccattgga tctgcattct tctgaatgaa atagacaaaa gtaattgcca
     2161 gtgaaaaatc agtgaagtct gtaaaagcaa cagttacatc tttttctgac
//
LOCUS       DATDNM010000902         4389 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_1172282, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000902 DATDNM010000000
VERSION     DATDNM010000902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4389
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1172282"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            223..3609
                     /locus_tag="VI413_14960"
     CDS             223..3609
                     /locus_tag="VI413_14960"
                     /inference="COORDINATES: protein motif:HMM:NF025681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA14 domain-containing protein"
                     /protein_id="HEY6915976.1"
                     /translation="MKNIYFISLFLLLSVGAMAQQTIQRVAGSPYPYSAAPDKLYLTS
                     ESYTYSQKIAVQSLQGILAKTKPEILRDAHGHRAVVGKYVPIDVTYYTNFQGLLTKYA
                     SRLAGYILCDAKQSSTNVAFSLGGILNAVAIPADIEASAIAAGLTKVIDVRGKDETWA
                     LATYGTQFSKTIASYQNVSDDRGLYLGDFSTFAGAFQFWDDSSTGTLATSVYNRMNPG
                     ATFFGWGAGEYATVEQLSKKSMLIHPSDFSPNLSTLCNIPVAMPKQKDPVTPYKVVPN
                     VHTVCFVMSDGDNIQWLSGASDDIHNWANPNRSRLNLGWTVSPGFVELAPAMYRKYVE
                     NALTTSECRNVLVAAPSGVGYHFPGIFPNLANECDLLNKFMKKADLGIVNIIDVDLGA
                     HNPNQYLRQSNIDALFYYTYGANYTGMNGKISWYKDKPSIGGRYTLWGTLSAPDALAT
                     KLNAASTNIYTEGGYSLIPVHVWSRDVTDVLECIKQLGPNVRVVAPDEFVWLVRKNIK
                     GLNLGNGNGLKGEYFKGADFDTLKYTQNDSRVDFEWGALSPNTTTLSNDNFSVRWTGQ
                     IQPVYSEKYTFYTTVDDGVKLTINSRTLVDSLNTTGSGIYSDTITLKSGQKYDITLEY
                     KEKTGNATCGLEWESTSQVRQYVPRTQLYCRAKATTGLITAYADCNFGGFSAGLKVGN
                     YNLTALNALGIYDKDIASVKVPAGYKVILYENDNFNGASKEITANDTCMTDWIDRASS
                     LQVKTNGLTNLEGVYYLQNKSSKYFMDVTGGFTATDDGVNVQQYSSTLTINQQFKFTH
                     LGDGTYSITAMHSGKSLDVDGFSQLDGANIQQWSYYGSTNQQFIIVAGTDGYYKLIAK
                     HSGKIVEAVSTANQGNVRQYYDYNQSKGQWKLTPVTTLVNSTGTGLTAEYFNGMNFET
                     SRFSTVDTTINFNWGTSAPYSKTNVDQFSARWEGKIQPRFSGSYIFYINSDNGRRLWV
                     NDQLIIDKWLSDYGIEYSGSISLSANQKYNIKLEYFEDAGGASCKLEWMNSQQPREVV
                     PKSQLFPKTISAVESNYANKNINIYPNPVTNGVMHVNLTDFTSNDPLKITLYDTLGKA
                     VLQSSLNTSGNISLNGVPSGMYLISFRNSEMNENKRIIIR"
     gene            3622..>4389
                     /locus_tag="VI413_14965"
     CDS             3622..>4389
                     /locus_tag="VI413_14965"
                     /inference="COORDINATES: protein motif:HMM:NF014851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding domain-containing protein"
                     /protein_id="HEY6915977.1"
                     /translation="MKQITLHIKFVLLLLLLPVPLMAQWTPKTTPIRTQWGKTVDLNN
                     PLPEYPRPQLVRTDWLSLNGYWQYKSGLSTDTVPRNQTLAGRIVVPFAVEATLSGVVK
                     HYDRLWYRRTFTVPENWAGKRIVMHFGAVDWESEVFINGVSKGIHKGGYDAFSYDITD
                     QLIGTGPQEVIVRVYDPTRDYGQPRGKQTTAPSGAMYTCSTGIWQTVWLEPVAEKSIS
                     SLKMIPDIDKGILTVTVNTPDSSGLTVTATAKDGDVIV"
BASE COUNT         1346 a          989 c          959 g         1095 t
ORIGIN      
        1 tacttcttag tcaggattac cggataaatg aagtgtatga acaagccgga ttcagttcat
       61 cgtcctactt tgccaaatgc tttaaagaac aattcggcat gctgccacgc gagtttgtta
      121 ccaaagccac caaaggaaac attcccaaag aaatgaatga ggaggaataa taccaccatt
      181 catacgcaaa cctatttcaa atactaatcg taattatcac aaatgaaaaa tatttacttc
      241 attagcttat ttctattgct ttcagtcggg gcaatggccc aacaaaccat ccaacgagtt
      301 gccggcagcc cttaccccta ctctgcagct cccgataaac tctatctgac ttcggaaagt
      361 tacacctatt ctcaaaaaat tgcggttcaa tcacttcagg ggatattagc caaaacaaaa
      421 ccagagatcc tgcgtgatgc gcatggccat cgtgccgttg tcgggaaata tgttcccatt
      481 gatgttacct attacacaaa ctttcaggga ttactgacca aatatgccag ccgccttgca
      541 ggttatattt tgtgcgatgc caaacaaagt tctaccaatg tggcattttc gttaggaggt
      601 atactaaatg ccgtagctat tccggccgat attgaagcat ctgccattgc tgcaggactg
      661 accaaagtaa ttgacgtaag aggaaaagac gaaacatggg ctttggccac atacggcacg
      721 caattcagca aaacaattgc ttcataccaa aatgtgtccg acgaccgcgg tttatatctg
      781 ggcgatttca gcacatttgc aggcgcattc cagttttggg atgacagctc caccggtaca
      841 ttggctacca gcgtctataa tcgtatgaat ccgggtgcca ccttttttgg ctggggtgca
      901 ggggaatatg caaccgtaga gcaattatcg aaaaaatcga tgcttattca cccgtctgat
      961 ttcagtccga atttgtccac attgtgtaac atcccggtag ctatgcccaa acaaaaagac
     1021 ccggtgactc cttataaagt ggttccaaac gttcatacag tttgtttcgt aatgtcagat
     1081 ggtgacaata ttcaatggct ttcgggcgca tcagatgata ttcataattg ggctaaccct
     1141 aaccgttcgc ggctgaatct gggctggacg gtttcgccgg gttttgtaga acttgcaccg
     1201 gccatgtacc gtaaatacgt tgaaaatgct ctaacaactt ccgaatgccg caatgtttta
     1261 gtagcagcac catcgggtgt aggttaccat tttccgggaa ttttcccaaa tctggcgaat
     1321 gaatgtgact tactaaacaa atttatgaaa aaagcagatc tgggtatcgt caacattatc
     1381 gacgttgatc tgggtgctca taatccaaac caatacctgc gccagagtaa tattgatgca
     1441 ctcttttatt acacgtatgg tgccaactac acagggatga acggtaaaat ttcgtggtac
     1501 aaagacaaac cttccattgg cggacgctat accctttggg gaacactctc ggcacccgat
     1561 gcactggcaa ccaaacttaa tgctgcgtca accaacattt atactgaagg aggttacagt
     1621 ttgattccgg ttcacgtttg gtcgcgagac gtgactgacg tgctggaatg tatcaaacag
     1681 ttaggaccaa atgtgcgggt ggtagctccc gatgaatttg tgtggttggt tcgaaaaaat
     1741 ataaaaggac taaatctggg aaacggaaac ggattaaaag gtgaatactt taaaggagcc
     1801 gattttgata cgctgaaata tactcaaaac gacagccggg tggattttga atggggagca
     1861 ttatcgccca acaccacaac actgagcaac gacaacttct cagttcgctg gacgggacaa
     1921 atacaaccag tctattcgga aaaatatact ttctacacca ctgtggatga tggggtaaaa
     1981 ctcaccataa atagccgaac actcgttgac tcactcaaca caacgggctc aggtatttat
     2041 tccgacacaa ttacgctgaa atcgggtcag aaatatgata tcaccctgga atacaaagaa
     2101 aagacgggca atgcaacatg cggattggaa tgggaaagca catctcaagt gaggcaatac
     2161 gtaccacgca ctcagcttta ctgccgtgca aaagctacaa caggtcttat tacggcttat
     2221 gccgattgta attttggagg tttctctgcg ggactgaagg tcggcaatta caaccttaca
     2281 gccctgaacg ctttgggtat atacgacaaa gacattgcgt cggtgaaagt acctgccggc
     2341 tataaggtta ttctgtacga aaacgacaac ttcaacggtg cttctaaaga aattacggct
     2401 aacgacactt gcatgaccga ctggattgac agggcttcat ccttgcaggt aaaaacaaac
     2461 ggcctgacca atctggaagg cgtttattac ctgcaaaata aatcgagtaa atattttatg
     2521 gacgttaccg gaggttttac agctaccgac gatggcgtga acgtacagca atacagcagc
     2581 accttaacta tcaaccaaca attcaaattc acccatttgg gagacggaac ttacagcatc
     2641 acagccatgc acagcgggaa atcgctcgac gtagacggat ttagccagtt ggacggtgcc
     2701 aacatacaac aatggagtta ctatgggtca accaaccagc agtttattat tgtagcggga
     2761 acggatggtt actataaact catagccaaa cacagcggaa aaatcgtaga agctgtttct
     2821 actgccaatc agggaaatgt acgccagtat tacgactaca accaatcaaa aggacaatgg
     2881 aaactgacgc ccgtaaccac gcttgtgaac agcaccggca ctggattgac ggctgaatac
     2941 tttaacggaa tgaactttga aacatccaga ttttcaacag tcgatacaac tatcaatttc
     3001 aactggggaa cctcagctcc ttattctaaa accaatgtcg accagttttc agcacgctgg
     3061 gaaggaaaga tccaaccacg gttttccgga agttatattt tttatataaa cagtgacaac
     3121 ggtagacgtt tgtgggtaaa cgaccagctt attatagata aatggctgag cgattatggt
     3181 atagaatact cgggaagcat ttcgcttagt gccaatcaga aatacaatat taaactggaa
     3241 tattttgagg atgctggggg agcatcttgc aaactggaat ggatgaacag ccagcagccg
     3301 cgcgaagtgg ttccgaaaag ccagttgttc cccaaaacta tttcggcagt agaaagcaat
     3361 tatgccaaca aaaatattaa tatataccca aaccccgtta ccaacggggt tatgcatgta
     3421 aatctgactg atttcacaag caatgaccct ctcaaaataa ctctttatga tacattagga
     3481 aaggcagttc tacaaagttc actgaacact tcgggcaata taagcctgaa cggtgtaccc
     3541 tcaggaatgt accttatttc gttccgcaac agtgaaatga acgaaaacaa aagaataatt
     3601 atcaggtaaa agaacgccta aatgaaacaa attactcttc atataaaatt cgtcctgcta
     3661 ttgctattgc tgcctgttcc gctcatggca caatggaccc caaaaacaac tcctatccgc
     3721 acacaatggg gaaaaacggt ggatctgaat aacccgctac ccgaataccc acgtccgcaa
     3781 ctggttcgaa ccgattggct tagcctgaac ggttactggc aatacaaaag cggattgagc
     3841 actgatacgg ttccacgcaa tcaaaccctg gccgggagaa tcgttgttcc gttcgctgtt
     3901 gaagccacac tttctggcgt tgtgaaacat tacgaccggc tttggtatcg ccgtacattt
     3961 acagttcctg aaaactgggc cggcaaacgc attgtgatgc atttcggagc tgttgattgg
     4021 gaatcggaag tgtttatcaa tggagtgagc aaaggaattc ataaaggtgg ttacgatgct
     4081 tttagttacg acattaccga tcaactaatt ggaacaggcc cacaggaagt gattgtgaga
     4141 gtgtacgatc caacccgtga ttacggacaa ccacgcggaa aacaaaccac tgcaccaagc
     4201 ggcgccatgt acacttgttc taccggtatc tggcagactg tttggctcga acccgttgcc
     4261 gaaaaaagca tcagcagcct gaaaatgatt cctgatattg acaaggggat tttgactgtt
     4321 acggtaaata cacccgattc ctcgggcctg actgttacgg caacagctaa agatggggat
     4381 gttattgta
//
LOCUS       DATDNM010000903         2621 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_211664, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000903 DATDNM010000000
VERSION     DATDNM010000903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211664"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1531
                     /locus_tag="VI413_14970"
     CDS             <1..1531
                     /locus_tag="VI413_14970"
                     /inference="COORDINATES: protein motif:HMM:NF012926.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HEY6915978.1"
                     /translation="SLFPDHEILRIIQCISGTVQMKMEFEPTIFYGSKSATLVDNKNL
                     GIKFTWKENSFILQSTLSPRQLNVHSNNATAYFILQQGESVIFSFSCSSQSPAVIPEL
                     KVTACDRFLQSIDYWKDWISRCSYKGIYKEHVRRSALTLKLLAHAPSGSIIAAPTTSL
                     PEAPGSERNWDYRYCWLRDASFTVRVLVKLGYEEEAHAYMNWILHATKLTQPELRVLY
                     SVYGQAKLKEKKIDWLEGFQNSKPVRIGNGADDQFQLDVYGEVLDAFYSYSKLIREFD
                     NESCKFMLGLGEIICKKWDQPDNGIWEARSSVVHHTHSKVMAWVGLDRLIKLCKKYKW
                     KKAPVEKFDRIKKEIEDQIESSGFNSELNSYTRIFNESSVDASSLVFSLVDYCDANSA
                     KMISTVQCIFKKLSKNRFIYRYRNEEDGLKGQEGSFGICNFWMIENLAKQGKTEDAIV
                     LFKNMLKCSSDTGLFSEELNPESYELFGNYPQGFTHIGLINAAFSINESLKKQPTHDR
                     W"
     gene            1518..1991
                     /locus_tag="VI413_14975"
     CDS             1518..1991
                     /locus_tag="VI413_14975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915979.1"
                     /translation="MTAGEILLWGFAATLMLTTIMAGSKPLGITRMDLPFILGTLFTS
                     NRNKAPLYGFFTHLVIGWAFAFIYAAAFKSANIYTWWFGVCIGFVHGAFVLSAGLQII
                     GVFHPRMARTYQGPTPTRQLEPPGFFALNYGKGTPIVTMIAHLIYGGVLGMFFHR"
     gene            complement(2100..2417)
                     /locus_tag="VI413_14980"
     CDS             complement(2100..2417)
                     /locus_tag="VI413_14980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915980.1"
                     /translation="MKMILSLMIVASLAMTSCTKQSHGADDIIQQNKAIEDNPNGGGG
                     NNTMSVPSAVLSAFSTRYPSATQVQWKLLSDGTYKAEFFIGSVKWQAIFTASGTLVKE
                     QHA"
BASE COUNT          765 a          478 c          566 g          812 t
ORIGIN      
        1 ttcacttttt cccgatcatg aaattctacg cattattcag tgtatctccg gaacagttca
       61 aatgaaaatg gagtttgagc caacgatctt ttatggaagt aaatcagcca cgcttgtcga
      121 taataagaat ctcggaataa aatttacatg gaaagagaat agcttcattt tgcaaagcac
      181 tcttagtcct cgccaactga atgttcattc aaataatgca actgcttatt ttattttaca
      241 gcaaggtgaa agcgtaatct tctcattcag ttgttcctct caaagtcccg ctgttattcc
      301 tgaattaaag gttactgcct gtgacaggtt cttgcaatct attgactact ggaaagattg
      361 gatcagccgt tgctcctaca aaggaattta taaggaacat gttcgcagaa gtgcgttaac
      421 attgaagctt ttagcacatg ctccttcggg gtctattatt gcggcaccta ctacctcatt
      481 acctgaagca ccaggtagtg aaagaaattg ggattaccgt tactgttggt tgcgcgatgc
      541 ctcttttact gtcagagtgt tggttaaatt gggttatgaa gaagaggcac atgcctatat
      601 gaactggata ctgcatgcta caaaacttac gcaaccagaa ttaagggttt tatattcagt
      661 gtatgggcag gcaaagctca aagagaagaa aattgattgg ctggagggat ttcaaaactc
      721 aaaacctgtg cgtattggta atggcgcaga tgaccagttt cagttggatg tatatgggga
      781 agtgcttgat gctttttatt cttattcaaa attgataaga gagtttgata atgaaagttg
      841 caaatttatg ttgggcctgg gagaaatcat ttgcaaaaaa tgggatcaac ctgacaatgg
      901 catttgggaa gctcgttctt cggttgttca tcatacgcac tcaaaagtga tggcctgggt
      961 gggattggac agattgatca agctgtgtaa aaaatacaaa tggaagaagg ctcccgtaga
     1021 aaaatttgac cgtataaaaa aagaaatcga ggatcaaatc gaaagttcag gattcaattc
     1081 ggaattgaat tcctatacca ggatatttaa cgaaagttcc gttgatgcaa gctcactcgt
     1141 attttcttta gttgattatt gtgatgccaa ttcagcgaag atgatttcaa ccgttcaatg
     1201 cattttcaaa aaactttcaa aaaaccgttt catttatcgg tatcgaaatg aagaagatgg
     1261 tcttaaaggg caggaaggct cttttggtat ctgtaatttc tggatgatag agaatcttgc
     1321 caagcagggt aaaacggaag atgctattgt gctttttaaa aacatgttga aatgttcaag
     1381 tgacacagga ttgttttctg aagaattaaa tcctgaatcg tatgaattgt ttggaaacta
     1441 cccgcagggt tttacacata tcggactgat taatgcagcc ttttccatca atgaatcttt
     1501 aaaaaaacaa ccgacacatg accgctggtg aaatattact ttggggattt gcggccacat
     1561 tgatgttaac tactatcatg gcgggctcaa aaccgcttgg cattacaaga atggatttgc
     1621 cattcatatt aggaactctt tttacttcca atcgcaacaa ggcaccattg tatggatttt
     1681 tcacgcattt ggttattgga tgggcgtttg catttattta tgctgctgca ttcaaaagtg
     1741 caaacattta tacctggtgg tttggtgtat gtataggatt tgttcatgga gcttttgttt
     1801 tatctgcggg gcttcagatc attggtgtct ttcatccacg gatggcacga acttaccagg
     1861 gaccaacacc cacgaggcaa ttggaacctc ccggattctt tgcgcttaac tatggtaagg
     1921 gaacacccat agtgacgatg attgcacacc tgatctatgg tggtgtatta ggtatgtttt
     1981 ttcaccgata attgccccta aatcatgagc cagcttttat gctcagcttt gcttagttga
     2041 tttcaccggt aataaggccg ccaaatggcg gccttatgtt ctataggggt cctcgaaaac
     2101 taagcgtgtt gttccttaac taaggttcca ctggccgtaa aaatggcttg ccacttaacg
     2161 cttccaataa agaactcggc tttgtatgtg ccatcgctaa gcagcttcca ttgaacctgt
     2221 gttgcagatg gataccgggt gctaaatgca gaaagtacag ccgatggaac ggacattgtg
     2281 ttgttgccgc caccaccgtt tggattgtct tcaatcgctt tgttttgctg aataatgtca
     2341 tcagctccgt ggctttgttt ggtgcaagat gtcattgcta atgatgcaac gatcattaag
     2401 cttaaaatca ttttcatgtt tcatgtttta ggttgatgaa ttgaattgga cttccttttg
     2461 taaaaaccaa aaaccaattt gtaaccagtc aagaaacttt ttttaagaag atggttggtt
     2521 atcaatcggc gagagtccct ctcatgccag ataacgccag ttttgtaatt tgaagactaa
     2581 ttaacaaaca atggaacagg caattaaaat caagaagatt a
//
LOCUS       DATDNM010000904         3920 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_212264, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000904 DATDNM010000000
VERSION     DATDNM010000904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 3920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3920
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212264"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1902
                     /locus_tag="VI413_14985"
     CDS             <1..1902
                     /locus_tag="VI413_14985"
                     /inference="COORDINATES: protein motif:HMM:NF027814.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NPCBM/NEW2 domain-containing protein"
                     /protein_id="HEY6915981.1"
                     /translation="LWLDELDANKIETGWSVSKSNKSIESNPLTVAGKKYERGIGTHA
                     ISKVLLNVNGTAQKFSALVGVDDEAKPAASIEFYVLCDRKIVFRSGIMKKGDAAKEIN
                     VNLKGVKQVALLVTDAKDGINDDHADWLNARITYNGNKPSIAGASSQQPYILTPKPSA
                     SPRINGARITGASPAKPFLYTVAATGKRPMTFSAEGLPQGLALDQKTGIISGKADREG
                     EYVVKITARNEVGTATRTMKIVIGKNKLALTPPMGWNSWNCWGLSVSAEKVKASADAM
                     VSSGLINHGWTYMNIDDGWEAPERAANGDIVCNEKFPDMKQLTDYVHAKGLKIGIYSS
                     PGRLTCGGYLGSLNHEQQDADMYAKWGIDYLKYDWCSYGEEFDKTDKSHSEYMKPYIK
                     MKNALAAQNRDIVHSLCQYGMNNVWEWGGETGQLWRTTGDITDTWESMSGIGFSQTHN
                     TRYAKPGNWNDPDMLVVGKVGWGPSLHPTRLTPDEQYTHISLWALLASPLLIGGDMSQ
                     MDEFTLSLLTNDEVIDINQDPLGKQAVCVSKQDGKEVWVKELEDGSKAVGLFNRGDYT
                     NVADLFNWAQKGKVLTTMKVNWSDLNISGKQQIRNVWTQKNISVQDQAFETVVPHHGV
                     VLVKISPVK"
     gene            complement(2014..2775)
                     /locus_tag="VI413_14990"
     CDS             complement(2014..2775)
                     /locus_tag="VI413_14990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006842730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03915 family putative DNA repair protein"
                     /protein_id="HEY6915982.1"
                     /translation="MTIFHYDKTFEGLLTAVFDAYNRKTFPDRLLETNEPEPLFVDES
                     FTVTTDEEKSGRVWKALEKKLDRNTQNMITYVWLSELKGSDELIFRYIRKTIDSKHSI
                     ETNFADDDVLQMQKLAQKVNKERQRLIELVRFQKAADDIFFAPVSPDHNSLPLTLDHF
                     KDRFADQKWIIYDTKRNYGFYYDQKTVTEMTLDSTNLFPEGKLDENLMAEDEKLYQEL
                     WKGYFKSMTIKERINLKLQRQHMPKRYWKYLTEKQ"
     gene            complement(2856..>3920)
                     /locus_tag="VI413_14995"
     CDS             complement(2856..>3920)
                     /locus_tag="VI413_14995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA modification/repair radical SAM
                     protein"
                     /protein_id="HEY6915983.1"
                     /translation="IYDCAYCINRRSNDLKRTTFAVDELVELTIEFYRRNYIEGLFLS
                     SGVINTPDYTMERMVRVIKELRTIHKFNGYIHMKSIPGASQQLVHEAGLYADRLSVNI
                     EIPTEQNLKMLAPEKDHESVYKPMLYIQQGVLESAEERQKSRFAPRFAPAGQSTQMII
                     GATDETDKQILNTSAALYTRPSMKRVYYSGYIPVNSYDNRLPAVKQAPLVRENRLYQA
                     DWLLRFYEFSVNEIVDDTHPDLDLEIDPKLSWALRHPEHFPVDINKADYSMILRIPGI
                     GVKSAKLIVMSRRYARLKSADLKKIGIVMKKAQYFITCNELAVQNVNDSSPEYVRRVL
                     TEKKLPKGAPDPNQLMLVFD"
BASE COUNT         1066 a          854 c          951 g         1049 t
ORIGIN      
        1 ctttggctcg acgaactgga cgcaaacaaa attgaaaccg gttggagcgt gagcaaatcc
       61 aacaaaagta tcgaaagtaa cccattgacc gttgccggta aaaagtacga aagagggatt
      121 ggtacacatg ccattagcaa agtacttttg aacgtgaatg gtacagctca aaaattttcg
      181 gctttggtgg gtgtcgacga cgaggctaaa ccggctgcca gcattgagtt ttatgtcctt
      241 tgcgaccgaa aaatagtttt tcgcagcggc ataatgaaaa aaggagatgc tgcgaaagaa
      301 atcaacgtaa atctcaaagg cgtgaaacaa gttgcattat tggtaacaga tgctaaagat
      361 ggtattaacg atgatcatgc cgactggcta aatgcccgga ttacctacaa cggcaacaag
      421 ccttctattg ccggcgcttc ttcgcaacag ccctacattc ttactccaaa accatctgct
      481 tcgccgcgga ttaacggggc acgcattact ggcgcaagcc ctgccaaacc attcctctat
      541 accgttgcag ctaccggtaa acgtcctatg actttcagtg ctgaaggtct tccacaaggg
      601 ctcgcattgg atcagaaaac cggaataatt tcaggaaaag ctgaccggga gggtgaatac
      661 gttgtaaaaa ttactgcccg caatgaggta ggaacagcca cgcgtacaat gaaaatagtc
      721 attggcaaaa acaagctggc tcttactcct ccaatgggtt ggaacagctg gaactgttgg
      781 ggattgtcag ttagtgccga aaaggtaaaa gcttcggccg acgcaatggt atcaagcgga
      841 ttaatcaacc acggctggac atacatgaac attgacgacg gttgggaagc tcccgagcgt
      901 gcggccaatg gcgatattgt gtgcaatgaa aaattccccg acatgaaaca acttactgat
      961 tacgtgcacg ccaaaggact gaaaatcggg atttattctt cgccggggcg gcttacctgc
     1021 ggcggctacc tgggaagcct gaatcacgag caacaggatg ctgacatgta tgccaaatgg
     1081 ggcatcgatt atctgaagta cgactggtgc tcgtatggcg aagagtttga caaaacggat
     1141 aaatcacatt ccgaatacat gaagccatac atcaagatga aaaatgcact tgcagcgcaa
     1201 aaccgcgata tcgtgcacag cctttgccag tatggtatga ataacgtgtg ggaatgggga
     1261 ggcgaaaccg gacaactctg gcgtactacc ggggacatca ccgatacctg ggagagcatg
     1321 tccggcattg gattcagcca aacgcataac acccgatacg ccaaacccgg caactggaac
     1381 gaccccgaca tgttggtggt aggaaaagtg ggttggggcc cttctcttca cccaacccgc
     1441 ttaacacccg acgaacaata tacacacatc agcctgtggg cactgctggc ttcgccactg
     1501 cttatcgggg gagatatgag ccaaatggat gaatttacac tcagcctgct tacaaatgat
     1561 gaggtaatag atataaatca ggatcctctg ggaaaacagg ctgtatgtgt ttcgaagcag
     1621 gacggaaaag aagtgtgggt gaaagagctg gaagatggtt cgaaagccgt aggattgttc
     1681 aaccgtggag actatacaaa cgtagccgat ttattcaact gggcacaaaa aggcaaagtc
     1741 ttaaccacaa tgaaagtcaa ttggtccgac ttgaatatca gtggtaaaca gcagatccgc
     1801 aatgtatgga cacaaaaaaa catttccgtt caggatcagg cgttcgaaac agttgttccg
     1861 catcacggag ttgttctggt gaaaataagt ccggttaaat aaaaaaagat acttgaaaaa
     1921 tatctcggtt gagatttaaa aaatcacgcc cgagagttag ttgaatcacg cctgagagtt
     1981 actcaacttt cgggcgtgat ttgatttttt cctttattgt ttctctgtca gatatttcca
     2041 gtagcgcttt ggcatatgtt gccgttgaag tttcaggttg atgcgttcct tgatggtcat
     2101 cgatttgaaa tagcctttcc aaagttcctg atagagcttt tcatcctctg ccatcaggtt
     2161 ttcgtccagt ttaccttcgg gaaacaggtt agtgctgtcg agcgtcattt cagtgacggt
     2221 tttctggtcg taatagaatc catagttgcg tttggtatca tagataatcc atttctgatc
     2281 ggcaaagcgg tctttgaaat ggtccagagt gagtggcaga ctgttgtggt cgggcgaaac
     2341 gggcgcaaag aatatatcgt cggcagcttt ctgaaaccgt accaattcaa tcaaccgttg
     2401 tcgttcttta tttacctttt gggcgagttt ttgcatttga agcacatcgt cgtcggcaaa
     2461 gtttgtctca atactatgct tgctatcaat agttttacga atatagcgga aaataagttc
     2521 gtcgctgccc ttcaactccg aaagccaaac ataggtaatc atattttgcg tattccggtc
     2581 cagttttttc tccagcgctt tccatacccg cccggacttt tcctcatccg tggtaacggt
     2641 gaaactttcg tctacaaaca acggttccgg ttcattcgtt tccagtaacc tgtccggaaa
     2701 agtcttacgg ttgtaggcat cgaacacggc tgtaagcaag ccttcaaaag ttttatcgta
     2761 gtggaaaata gtcatggtta ggcttattgg ttaattagtt aactggttag gataactttt
     2821 ctaaagtttt aaactttgga taagtttgag taaaactagt caaataccag cattaactgg
     2881 ttcgggtctg gtgctccttt cggcaatttc ttttcagtga gtacccggcg cacgtattcc
     2941 ggcgagctgt cgttcacgtt ctgaacagcc agttcgttgc aggtgataaa atattgcgct
     3001 tttttcatta ctatccctat tttctttaaa tcggctgatt tgagccgggc atagcggcgc
     3061 gacattacaa tcagtttggc cgattttacg ccaatgcccg gaatgcggag aatcatgcta
     3121 taatcggctt tgttgatatc aaccggaaaa tgttcaggat ggcgcaatgc ccacgacagt
     3181 tttgggtcaa tttccaaatc cagatcagga tgagtgtcgt ctacaatctc gttgacacta
     3241 aattcgtaga aacgtaacaa ccaatctgcc tggtataagc ggttttcgcg aaccagcggt
     3301 gcttgtttca cggctggcag ccgattgtcg tacgaattga cgggaatata gcccgaataa
     3361 taaacacgct tcatgctggg tcgggtgtat aatgcagctg aagtgttcag tatttgtttg
     3421 tcggtttcgt cagtagcgcc aataatcatt tgtgtacttt gcccggccgg ggcaaaacgg
     3481 ggggcaaagc gggatttttg ccgttcttcg gcactttcca aaactccctg ctgaatgtaa
     3541 agcatgggtt tgtaaacgct ttcgtgatct ttttcgggtg ccagcatttt caggttctgc
     3601 tcagtaggta tttcaatgtt cacgcttaaa cggtctgcat acaatccggc ttcatgaacc
     3661 agttgctgac tggctcccgg gatacttttc atgtggatgt aaccgttgaa cttatgaatg
     3721 gtgcgcagtt cttttatcac ccttaccatg cgttccatgg tgtagtcggg cgtattgata
     3781 acgccggagc tcagaaatag tccttcaata taattgcggc gataaaattc aatggtaagc
     3841 tctactaact cgtcgacggc aaatgtggtg cgcttcaggt cgttgctgcg gcggttgatg
     3901 caataggcac aatcgtagat
//
LOCUS       DATDNM010000905         4392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_212630, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000905 DATDNM010000000
VERSION     DATDNM010000905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4392
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212630"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..478)
                     /locus_tag="VI413_15000"
     CDS             complement(<1..478)
                     /locus_tag="VI413_15000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY6915984.1"
                     /translation="MRTKIFMILGALLATLLATAQQKPWTLQQCVDTALANNRTVKQQ
                     TLTKKNREIAYEQARNNLLPNLNAGIGQSFGFGRIVGDNNTYLSGTASSQNTRFGISS
                     DVTLYNGFKLRNTIEARKADMYASEADLEKTKSDITTNVAAGFLQILLNKELLQIAK"
     gene            complement(573..1700)
                     /locus_tag="VI413_15005"
     CDS             complement(573..1700)
                     /locus_tag="VI413_15005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY6915985.1"
                     /translation="MKKFFKIALLVLLAVGVVWTFWFLWQKSRPKVKKYTIEAVTIGS
                     IDKRTVATGKVEPRNEILIKPQMSGIIAEVYKEAGDMVKSGDVIAKIKVIPDMMSLNN
                     AESRVQRAQIAFDQTKKNYERDTKLYADKVISREEFEKTQLQYNNEKEDLKSAKDNLS
                     LTRDGITANSAAYSNTLVRSTITGTILDVPVKVGNSVIQSNNFNDGTTIATVANMSDM
                     LFVGKLDETEVGKIKVGMPMDITIGALQDQKLTATLEYVSPKGKEENGAIMFEMKAAV
                     KVPKDVFVRAGYSANAEIILSKSEKVITIPESCIEFGGDTAFVYVLKTKEPQAFEKKQ
                     VKIGLSDGIKIEVKSGLKTKDKIRGAEILEKKPEAKKEEKK"
     gene            complement(1786..3099)
                     /locus_tag="VI413_15010"
     CDS             complement(1786..3099)
                     /locus_tag="VI413_15010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013443619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6915986.1"
                     /translation="MKNKDNTYSDSHKAPFRGLGELFDLDRWQEIWFTITHNKSRSFL
                     TAFGVFWGMFMLVVMVGAGVALQRGMSSQIEGFATNSCFVWTEQTSEPYKGLKKGRSW
                     NMENEDIPVLINKIPEIQYLAPVLFGGGGGTNNVTRNDKAGSYGIKGNFPSYNLIDES
                     KMTYGRYINDIDIVEKRKVCVIGERVYEVLFPKDENPLGKNIQVNGIYFQVIGVARHT
                     SHINIGGNAEESVVLPFSTMQQAFNQGNVVHFMAITAKPGIKVKVIEDKIREVLKAQH
                     NIAPNDTKAVGGFNIEDQFNMFLYLGIGIATLIWVVGLGTLFAGAIGVSNIMLVTVRE
                     RTKEIGIRRALGATPTDIIRQILTESIVLTLIAGISGLMFGVGLLSLVGLALSSGDQF
                     FKDPQISFSVAIGAFFILLVIGTLAGFIPANRAMNIKPIEAIREE"
     gene            complement(3126..>4392)
                     /locus_tag="VI413_15015"
     CDS             complement(3126..>4392)
                     /locus_tag="VI413_15015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019539936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6915987.1"
                     /translation="KLNMFSLDTIQEILASLKHNKLRTVLTGLSVSWGIFILIVLLGA
                     GNGLKNGVTSNFSDRATNTVQMWSGTSSLPYKGLKSGRSLNFAERQVEDVDENIEESD
                     NQTGVIEKQLTITHNNEYGSYQIKGVNPNYMKTFNLKFEPSDGRFVNDLDLKGSKKVI
                     VIDKKIEEVLFKGKSSLGQYVQVGEVMFLVIGVNSKKERWGNGNAYIPFSTAQYIFNP
                     NLKFYNIAMTVNGLETKEANEAFNDKLKNTMSKSLRFDPNDTQALWIWNSQREYVETM
                     KIFAGITLFVSIIGIFTLIAGIVGVSNIMLVSVKERTREIGIRKAIGAPPGTILRSIV
                     LEAILITTIFGYIGMMMGIGLTEMVNYIMTQSAAGAGDGMSVFKNPTVELSYVLISTG
                     ILIVSGVIAGYMPARRAVRIKPIEAMREE"
BASE COUNT         1183 a         1063 c          750 g         1396 t
ORIGIN      
        1 ctttggctat ttgcagcaat tctttattca gcaaaatctg taaaaatccg gcagcaacat
       61 ttgtagtaat atcgctttta gtcttttcca aatctgcttc cgaagcatac atgtcagctt
      121 tacgtgcttc aatagtgttt ctcaatttaa aaccattgta caaagttaca tcgctcgata
      181 tgccaaaacg tgtattttgc gaggaagctg ttccactcag gtatgtgtta ttatctccaa
      241 ctatacgtcc gaacccaaaa gactggccaa ttcctgcatt caggttaggc aacaaattat
      301 tccgagcctg ttcgtaggca atttctctgt ttttctttgt cagcgtttgt tgtttcaccg
      361 tgcggttatt tgccagtgcc gtatccacac attgttggag cgtccatggc ttttgctgcg
      421 cagtggcaag cagagtggcg agcagcgcac ccaatatcat aaatattttt gttctcattt
      481 gttttacgaa ttattcgaat taatacgaat ttcactaatt agaaatacca aattatctca
      541 ttaccacatc atactatcat cacattatca cattatttct tttcctcttt cttagcctcg
      601 ggtttctttt ccaggatttc agccccacgg attttgtctt tcgttttcaa accgctcttc
      661 acttctattt ttataccgtc ggacaatccg attttaacct gtttcttttc aaaagcctga
      721 ggttctttgg ttttgagcac atacacaaag gcagtgtcac caccaaactc aatacaactt
      781 tcgggaatgg taatcacttt ctccgatttc gacaaaataa tttcggcatt ggcactataa
      841 cctgcacgaa cgaaaacatc tttcggaact tttacagccg ctttcatctc gaacatgata
      901 gcgccgtttt cttcttttcc ttttggtgaa acatattcca gggtagccgt cagcttctgg
      961 tcctgcaaag caccgattgt aatatccatt ggcataccca ctttgatttt gcccacttcg
     1021 gtttcgtcca gtttacctac aaaaagcata tcactcatat tggcaacggt ggcaatagtg
     1081 gttccatcgt taaagttgtt cgattgaata accgagttac ccactttaac cggcacatcc
     1141 agaatagttc cggtaatagt ggaacgaaca agggtattgc tgtaggcagc actgttggcg
     1201 gttatcccat cgcgggtcag gctcaggtta tctttcgcag acttcaggtc ttccttttcg
     1261 ttattatatt gcaactgggt tttttcaaat tcctctctcg aaattacttt gtcggcatac
     1321 agttttgtat cgcgttcgta attcttttta gtttggtcaa aagcaatctg ggcacgttgc
     1381 actctcgatt cggcattgtt gagactcatc atatccggaa ttacctttat tttggcaatc
     1441 acatcgcccg attttaccat gtcgcccgct tctttgtaca cttcggcaat aataccggac
     1501 atctgcggtt taatcaaaat ctcattccga ggttccactt tacccgttgc tacagtacgc
     1561 ttatcgatac taccgatggt aactgcttcg atggtgtatt tttttacttt cggacgtgat
     1621 ttttgccata aaaaccaaaa tgtccaaact actccgactg ccaataaaac caaaagggca
     1681 attttaaaaa actttttcat gttgctttga attatgagtt atatgtttat tttttattct
     1741 ttcttaaatt atcacattag catatcagga aattatcaca ttctcctatt cttcccgtat
     1801 cgcttcaatc ggcttaatgt tcatggctct gttggcgggt ataaatccgg ccagcgtgcc
     1861 aatcaccaac aagataaaga atgcaccgat agccacacta aagctgattt gcggatcttt
     1921 gaaaaattgg tcgcccgagc ttaaagccaa gccaacaagt gaaagcaacc cgactccgaa
     1981 catcagtccg gaaatacccg ctatcaatgt caaaacgata ctttcagtca atatctgacg
     2041 gatgatgtcg gttggtgttg ctccgagcgc ccggcgaatt ccgatttcct tagtacgttc
     2101 gcgcactgta accaacatga tattactaac tccgatggca ccggcaaaca acgtccccaa
     2161 accaaccacc caaattaatg tggcaatacc aattcccaga tacagaaaca tattaaactg
     2221 gtcttcgata ttaaagcctc ccacggcttt tgtgtcattg ggcgcgatat tgtgttgggc
     2281 tttaagtacc tcacgaattt tatcttcaat caccttcacc tttatacctg gcttagcagt
     2341 tatagccata aagtgaacga catttccctg attaaacgct tgctgcattg tgctaaacgg
     2401 caatacaacc gactcttcgg catttcctcc gatattaata tgggaagtgt ggcgcgccac
     2461 cccgattacc tgaaaataaa ttccatttac ctgaatgttc tttcccaatg gattttcatc
     2521 tttggggaac aacacttcgt aaacacgctc accgattaca cagactttac gcttttcaac
     2581 aatgtcaata tcattgatat atcgtccgta agtcatttta ctttcgtcaa tcagattgta
     2641 gcttggaaaa ttccctttaa tcccataact acctgcttta tcgttccggg taacgttatt
     2701 tgttcctccg cctccaccaa acaatacagg tgcaagatat tgtatttcag gaattttatt
     2761 gataagcacc ggaatgtctt cattttccat attccaactt cttccttttt tcaatccttt
     2821 atacggttca gaagtctgct cagtccacac gaagcacgaa ttagtggcaa aaccttcaat
     2881 ctgcgaactc atcccccgct gcaatgccac accggctcct accatcacca ccaacataaa
     2941 cattccccag aaaacgccga aagccgtcag aaagcttctt gatttattgt gggttatagt
     3001 aaaccatatt tcctgccaac ggtcgaggtc aaagagttcc cccaaccctc tgaagggggc
     3061 tttgtgtgaa tctgaatatg tattgtcttt atttttcatt tgttcaattc tttcattttc
     3121 aattcctatt cctctctcat cgcttctatt ggtttaatcc ttaccgctct ccgggctggc
     3181 atatatccgg caattactcc cgacacaatt aaaattccgg tagaaatcaa tacgtaagaa
     3241 agttcaaccg tcgggttttt aaatacagac attccatctc ccgcaccagc cgccgattga
     3301 gtcattatat aattaaccat ctcagtcagc ccgataccca tcatcatgcc aatgtatccg
     3361 aaaatagtgg taattaatat ggcttcaaga acaatggaac gtaaaatggt tcccggagga
     3421 gcgccaatag cttttcggat accaatttcg cgggttcgtt cttttacaga caccaacatg
     3481 atattactta cgcccacaat accggctatc aacgtgaaaa tgccaatgat agagacaaaa
     3541 agcgtaatac cggcaaagat tttcatggtt tctacatact cccgttgcga gttccaaatc
     3601 cacaaagcct gggtatcatt cggatcgaaa cgcaggcttt tcgacatcgt atttttcaat
     3661 ttatcattaa aggcctcatt tgcttccttc gtttccaatc cgttaactgt catggcaata
     3721 ttatagaatt tcaggttcgg attaaatata tattgagccg tggaaaaagg aatataagca
     3781 ttgccatttc cccagcgctc ttttttagaa ttcacaccaa ttaccagaaa catcacctct
     3841 cctacctgaa catactggcc taacgacgat tttcctttaa ataggacttc ttcaattttc
     3901 ttatcaataa cgatcacctt tttgctgcct ttcaggtcta ggtcattcac aaaacgtcca
     3961 tcgcttggtt caaatttaag attaaaggtt ttcatataat tgggattaac gcctttaatc
     4021 tgatacgaac catactcatt attatgggtt atagtcagtt gtttttcaat aacacctgtt
     4081 tggttatcac tctcttctat attttcatcc acatcttcca cttgcctttc ggcaaaatta
     4141 agcgaccgtc cgcttttcaa ccccttatag ggcaacgatg aagtccccga ccacatttga
     4201 accgtgttgg ttgcgcggtc gctaaagttt gaggtaacac catttttcaa gccattgccc
     4261 gcacccagca gcacaatcag gataaaaata ccccacgaca ccgaaagccc ggtaagaacc
     4321 gtgcgtagct tattgtgttt taagctggct aaaatttcct gtatggtatc taatgaaaac
     4381 atgttgagtt tt
//
LOCUS       DATDNM010000906         2890 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_960467, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000906 DATDNM010000000
VERSION     DATDNM010000906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_960467"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..264
                     /locus_tag="VI413_15020"
     CDS             <1..264
                     /locus_tag="VI413_15020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HEY6915988.1"
                     /translation="DFLKNNVPQVKPMIPEASFLVWLDCKDLGMETDELHKFFSHKAG
                     LGLNKGTIFGPGGEYHLRLNVACPRSILEKGMKQLLAAVKGKQ"
     gene            346..1008
                     /gene="ung"
                     /locus_tag="VI413_15025"
     CDS             346..1008
                     /gene="ung"
                     /locus_tag="VI413_15025"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009130641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEY6915989.1"
                     /translation="MDVKIEQSWKTVLQPEFDKEYFVKLTEFVRNEYKTRLTFPPASL
                     IFNAFDQCPFNQVKVVIIGQDPYHGDGQAHGLCFSVNDGVAFPPSLLNIFKEIERDLG
                     KSMPTTGNLIRWAQQGVLLLNATMTVQAHMAGSHQGKGWEAFTDAVIHKLAAEKEHLV
                     FMLWGSYAQKKGDFIDSKRHLVLKSVHPSPLSAYRGFIGNNHFSLANKYLKEYGLNEI
                     DW"
     gene            complement(1112..>2890)
                     /locus_tag="VI413_15030"
     CDS             complement(1112..>2890)
                     /locus_tag="VI413_15030"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3365 domain-containing protein"
                     /protein_id="HEY6915990.1"
                     /translation="VYVPVTEQTPPNPYLTSISQRDIVTTTGKRLTLVNPAYMSRQVY
                     KLAEKEAGVKTHITSLKPIRPQNRADEWETKALLKLQKGDLDFSSSETINDKEYVRYM
                     HSLKVEKTCLQCHANQGYKLGEIRGGISVTVPMEQYSKIADSKIKVVIQNHLYLYLFI
                     LLFAVLTYRFYSKDLLIRLRMQKQIADSEANLKVQNKEYALLNEDFKAQNLLLNSAKE
                     KAEESEHLFRTIFVEAPVGMALVNSETGKIYEVNPKFAHIAGRTTETMVDLDWMSITH
                     PDDLQADLDKMVLLNAGEINSFNMQKRYVKPDNSTVWINMTIAKTKVDKFGNPCHVCM
                     IEDITQSKQAEEELENSREELKRYASHLQNIREEERILLAREIHDDLAQNLVVVKVDL
                     GLFKMKLSKEVADADNSGLMDNLTELSMKMNNTISTCRNIMSGLRSEELELIGLLETM
                     KQYTADFQEKYGIECKFQTNLETIFLAPKEAVTLLRIFQEALSNVYKHANASVVKILL
                     KAENDELICEIEDDGVGFATSDKTKSYSYGIIGMKERVLLLNGRLAIQSEMNKGTVVR
                     IEIPYLNEDVLSDFSAVSALKATVNS"
BASE COUNT          831 a          602 c          512 g          945 t
ORIGIN      
        1 gattttttaa aaaacaatgt tcctcaggtg aaacccatga ttccggaagc ttcttttctt
       61 gtttggctcg actgcaaaga tttgggcatg gaaaccgacg aattacacaa gttcttttcg
      121 cataaagccg gcctgggact aaataaagga actattttcg gcccgggtgg cgaatatcat
      181 ttgcgcctga atgtggcttg ccccagaagt attctggaaa aaggcatgaa acaactcctg
      241 gcagcagtaa aaggcaaaca gtgataggta agggttcgct tccaattata tcaatttcca
      301 attatcaatt aaccttgcta caaatcaacc atttaatcac cagttatgga cgttaaaata
      361 gaacagtcgt ggaaaacggt tttgcaaccg gaatttgata aagaatactt tgtaaaactg
      421 actgaatttg tgcgaaacga atacaaaacc cgattgacgt ttccacccgc gtcgcttatt
      481 ttcaatgctt ttgaccaatg cccgttcaat caggtgaaag tagtaattat tggtcaggat
      541 ccttatcatg gcgatggaca ggcacatggg ttgtgttttt cggtgaacga tggcgttgct
      601 tttccgcctt cactactcaa tatttttaag gaaatagaac gtgatttggg aaaatctatg
      661 cccacaaccg ggaatttgat tcgctgggca caacaaggcg ttttgttact caatgctacg
      721 atgacagttc aggcacatat ggccggttcg catcagggaa aaggctggga agcatttacc
      781 gatgctgtta ttcacaagtt agccgcagaa aaagaacatc tggtttttat gctttggggg
      841 tcgtacgcac agaaaaaggg cgattttatt gattccaaac gccatttggt tctcaaatcg
      901 gttcacccct ctcctctatc tgcctatcgt ggttttatcg gtaataatca tttttcttta
      961 gccaataaat acctgaaaga atacggacta aacgaaatag actggtaaaa taaaacgctt
     1021 acaaggatgt tcttgtaagc gttttgttat ttcattgtta actcagaata ctccgtcaaa
     1081 gcttctacaa atttcaaatg agcgaattaa ttcaggagtt tactgtagcc tttaaagcgc
     1141 tgacggctga aaaatctgaa aggacatctt catttaaata cggaatttca attcgtacaa
     1201 ctgtcccttt attcatttca ctttgaatag ccaaccttcc atttaataaa agtacacgct
     1261 ctttcattcc gataattcca taagaatagc tttttgtttt gtcagatgtt gcaaatccaa
     1321 caccatcgtc ctcaatttcg catatcaatt cgtcattttc agctttcagt aagatcttca
     1381 caacactagc attagcatgc ttatatacat ttgacagggc ttcctggaaa atccgaagca
     1441 aagttacggc ctctttagga gcaaggaaaa ttgtttcaag gttagtttgg aacttacatt
     1501 caatcccata cttttcctgg aaatcggctg tatattgttt catcgtttcc aacaaaccaa
     1561 ttaattccaa ctcttctgac cgaagtccgg acataatatt tctacaagta gaaatcgtat
     1621 tgttcatctt catcgaaagt tcagtcagat tatccattag acccgaatta tctgcgtcag
     1681 caacttcttt tgaaagcttc attttgaaaa gtcccagatc tacttttaca acaacgagat
     1741 tctgtgccag atcatcatga atttcccgag ccaacaggat tctttcttct tcacgaatat
     1801 tttgcaggtg ggaagcgtat cgtttcaact cttctcttga attttccaac tcttcttcag
     1861 cctgtttgct ctgggtaata tcctcaatca tacaaacatg acagggattt ccaaacttat
     1921 caacttttgt tttggcaatt gtcatattta tccaaactgt tgaattgtcg ggtttaacat
     1981 accgtttttg catattaaaa ctatttattt ctccagcgtt taacagaacc atcttatcca
     2041 aatccgcctg aagatcatct ggatgtgtaa tactcatcca gtcaagatcg accattgtct
     2101 ctgttgtccg acctgctata tgggcaaatt tcggattcac ttcgtagatt ttaccagtct
     2161 cagaattaac taaagccata cctacaggcg cttccacaaa aattgtccgg aacaaatgct
     2221 cgctctcttc tgctttttct ttggccgagt taagcaataa attttgagct ttaaaatctt
     2281 cattcaatag agcatattct ttattctgga ctttaagatt agcctcacta tcagcaattt
     2341 gtttttgcat ccgaagcctt atcaataaat cttttgaata aaacctatat gtcaacaccg
     2401 caaacagaag tataaataaa tataagtaaa gatgattctg tattactact tttattttag
     2461 agtctgcaat tttggaatac tgctccatag gtaccgtaac acttatccct ccacgtatct
     2521 ctcctaattt atagccttgg ttagcatgac attgtaagca tgttttttca actttcaggg
     2581 aatgcatata acgcacatac tctttgtcat ttattgtttc tgagctgcta aaatcaagat
     2641 cccctttttg aagtttcaat aatgcttttg tttcccactc atctgctcta ttttgaggcc
     2701 gaataggttt taagctggtt atatgagtct ttactccggc ttccttctcg gctaatttat
     2761 acacttgccg ggacatgtac gcaggattta ctaaggtaag tcttttccct gtggtggtta
     2821 caatgtctct ttgcgagata gaagttaaat atggatttgg cggagtttgc tctgtaacag
     2881 gcacatatac
//
LOCUS       DATDNM010000907         4637 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_745921, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000907 DATDNM010000000
VERSION     DATDNM010000907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 4637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4637
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_745921"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..650)
                     /locus_tag="VI413_15035"
     CDS             complement(78..650)
                     /locus_tag="VI413_15035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3109 family protein"
                     /protein_id="HEY6915991.1"
                     /translation="MLQIDDTIISLDLLDEKFVCDLASCKGICCIEGDDGAPLEEEEV
                     KIIEELLPVIWDDLTEVSKAVIKAQGVSYIDADGEPVTSIVNGAECVFTYTDNDGTCK
                     CAIEKAFREGKTDFYKPISCHLYPVRIQKYDEFLAVNYHRWSVCSCARKLGGKLKVPV
                     YKFLKEPLIRKFGPEWFDQLEIADGELKNR"
     gene            complement(664..1281)
                     /locus_tag="VI413_15040"
     CDS             complement(664..1281)
                     /locus_tag="VI413_15040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013444694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEY6915992.1"
                     /translation="MNFIHLIDYAGTFAFAISGIRLASAKRFDWFGAYVVGLVTAIGG
                     GTIRDLLLNVTPFWMLQPSYMIVTALALISVLLMGKYLIRLNNTFFIFDAIGLGLFVV
                     VGIEKSLAAHFPFWVAILMGMITGSAGGVIRDILINEVPLIFRKDIYALACVVGGLVF
                     LACAKLHISSPITQTVSALSIILTRILAVKYHISLPVLKGHEENN"
     gene            complement(1367..1732)
                     /gene="secG"
                     /locus_tag="VI413_15045"
     CDS             complement(1367..1732)
                     /gene="secG"
                     /locus_tag="VI413_15045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005861586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEY6915993.1"
                     /translation="MYVLLIILIVIASILLTLLVLVQNSKGGGLAAGFSSTNQIMGVR
                     KTTDFLEKATWGLVIAVVVLSVAAVGVHSSKPAATNESEIKDQVQHAKQTEPGVVAPN
                     FGENPEATKTPAPATPAKK"
     gene            complement(1741..2397)
                     /locus_tag="VI413_15050"
     CDS             complement(1741..2397)
                     /locus_tag="VI413_15050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915994.1"
                     /translation="MTHEEFISLVKQPELAASQNVPDLKELVDLYPYFAPARLFYAKA
                     LQQSGSVLFASNLKFSSLYSANRSWLYYYIYPDKKISTEPYRREKTKKSSGDYFDMIN
                     AVELEGGDAKQTLKNLAERLRTARTMVVSNAVQTVKETPVITVVDEFETVNPVLIKET
                     PLDVLEFSEDKAKKLIQERKYLEAIEILKALNLNNPKKSVYFADQIRFLEKVIANSKK
                     "
     gene            complement(2450..2974)
                     /locus_tag="VI413_15055"
     CDS             complement(2450..2974)
                     /locus_tag="VI413_15055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008760046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptE family protein"
                     /protein_id="HEY6915995.1"
                     /translation="MSVRKTKIALWLAVSVISITFVSCTISYKFNGSSIDYSKTKTIS
                     ISDFPNTAELIYPPLAQSFGEALRDAYTKQTRLQILKKGGDMHLEGEIIGYQLTPMAI
                     SADTYSSETKLTMTVNVRFSNNKSPDDDFEKKYTAYQTFDSSRRLDDVQEELMKTMLA
                     DIVDNIYNDTVAKW"
     gene            complement(2997..4283)
                     /locus_tag="VI413_15060"
     CDS             complement(2997..4283)
                     /locus_tag="VI413_15060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004289668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY6915996.1"
                     /translation="MQHSEIQAVKQRFGIIGTSELLNRAIDIAVQVAPTDLSVLITGE
                     SGVGKENFPQIIHFYSHRKHGPYIAVNCGAIPEGTIDSELFGHEKGSFTGATADRKGY
                     FEVADGGTIFLDEVGELPLSTQVRLLRVLETGEFIKVGSSKTLKTNVRVVAATNLNMS
                     QATRDGKFREDLFYRLNTVPIAVPALRDRKEDIVLLFRKFASDFAEKYRMPAVKLTEE
                     AKNILSNYYWNGNVRQLKNITEQISVIEQSREITAQILRAYLPKDDMERLPALFSSSG
                     NDQKSFNSEREILYQVLFDMKKDMNDLKKLVNDIMSGSQPDVQSAEVHYSPNFLSQSD
                     TIITSPATAVDYKSDKVVRDTAQFVSHVDDVESYQDAEEYHELESPKPLSLEDMERQM
                     IKQTLERHRGKRKAAADELQISERTLYRKIKEYGID"
     gene            complement(4458..>4637)
                     /locus_tag="VI413_15065"
     CDS             complement(4458..>4637)
                     /locus_tag="VI413_15065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008665928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915997.1"
                     /translation="KFNTVLVECYSYLGYYYLLQKDNTQSMTYWTKILAIDPTNANAK
                     KASEGITKAMKGKTK"
BASE COUNT         1469 a          991 c          682 g         1495 t
ORIGIN      
        1 tatcaacaat ctgaccaatc agaatctcat caccaatggt gattatttca acactaacac
       61 gattattagt cataatatta tctgtttttt aattcaccat ctgctatttc caattgatca
      121 aaccattcag gtccaaattt acgaatcaac ggctctttta aaaacttata gaccggaact
      181 ttcaacttac cacctaactt ccgtgcacaa ctgcatacgc tccatctatg ataattcaca
      241 gccaaaaact cgtcgtattt ttgtatacga accggatata aatgacagga aatgggtttg
      301 taaaaatcag ttttaccctc acgaaaagct ttttcaatag cacatttaca agtcccatca
      361 ttatccgtgt acgtaaaaac gcactcagcg ccatttacta ttgaagttac gggttcgcca
      421 tcagcatcga tgtacgaaac accttgtgcc ttaattactg ctttagaaac ctctgtcaaa
      481 tcatcccaaa taacaggtaa taattcttcg ataatcttca cctcttcttc ttcaagcggc
      541 gcaccatcat caccttcaat acaacaaatc cctttgcaag aagctaaatc acaaacaaat
      601 ttttcatcaa gtaaatcaag gcttattata gtatcatcta tctgtaacat cacttatata
      661 tttctagtta ttttcttcat gtcccttcaa aacaggcaaa cttatatgat atttcaccgc
      721 taaaattctt gtaaggataa ttgataaagc cgaaacagtc tgagttatag gtgaggatat
      781 gtgcaacttg gcacaagcca gaaaaaccaa tccacccact acacatgcta acgcatatat
      841 atccttgcgg aagatcaacg gcacctcatt tatcaggata tcacgaataa ctccacctgc
      901 ggagccagta atcataccca ttagtattgc aacccaaaaa gggaaatgtg ctgccaggct
      961 cttttcaatt ccaacgacca caaacaaccc caaaccgata gcatcaaata taaaaaacgt
     1021 attgtttaac cttatcaggt atttacccat caaaagaact gaaattaatg ccagagctgt
     1081 tacaatcata tatgaaggct gcaacatcca aaacggtgta acattcagaa gcaagtcccg
     1141 aatagttcca cctcctattg cagtaacaag tccgacaaca tatgccccaa accaatcaaa
     1201 tcgctttgcc gatgccaacc ttataccact tattgcaaaa gcaaaggtgc cggcgtaatc
     1261 gatcaaatga ataaagttca tacctactaa ttaacaacaa acaattataa aaaaatgaaa
     1321 gcgcatcaaa tgtatttgat acgctccatt caatattttc taagtcttat ttctttgctg
     1381 gcgtagctgg cgcaggagtc tttgttgctt caggattctc tccgaaatta ggagctacca
     1441 cacccggttc tgtttgcttt gcatgttgaa cctgatcttt aatttccgat tcatttgtag
     1501 cagcaggctt gctactatgt acaccaacag ctgcaactga caacacaaca accgctataa
     1561 ccaaacccca agttgctttt tcaagaaaat ctgtcgtttt acgaacaccc ataatttgat
     1621 tcgttgacga aaaaccagca gctaaaccac cacctttaga gttttgaacc aaaaccagaa
     1681 gcgtaagcag gatagaagca ataacaatta aaataataag aagaacgtac ataatattgt
     1741 ttattttttt gagtttgcaa taactttttc taaaaatcga atttggtctg caaagtaaac
     1801 actttttttc ggattattca aatttaaggc cttcaatatt tcaattgcct ctaagtattt
     1861 gcgttcttga atcagtttct tagccttatc ttcagaaaat tctaaaacgt ccaatggggt
     1921 ttcctttatc aaaacaggat ttactgtttc aaactcatca acaacagtta tcactggcgt
     1981 ttcttttacc gtttgtacag catttgaaac taccatcgta cgggcggttc taagacgttc
     2041 agccaaattc tttagcgttt gctttgcatc accaccctcc aactctacgg cattaatcat
     2101 atcaaaataa tcgccggatg atttttttgt tttctctcgg cgataaggct cagttgaaat
     2161 ctttttatct ggataaatat aataatacaa ccaactccgg ttagctgaat ataaagagga
     2221 aaatttcaaa ttacttgcaa acaatacact ccccgactgc tgtaaagcct tggcataaaa
     2281 caatctggcc ggagcaaaat aaggatacaa atcaactaac tctttcaaat ccggcacatt
     2341 ttgtgaagct gctagttctg gctgctttac aagtgatata aattcttcgt gagtcattag
     2401 tattgtatga attggaatta cccttagggt tgaaattatt tattggaaat taccatttag
     2461 ctacagtatc gttatagata ttgtctacaa tgtctgctaa catggttttc atcaattcct
     2521 cttgaacatc atcaagtctt ctgctgctat caaatgtttg atatgcagta tatttttttt
     2581 caaaatcgtc atcagggctc ttattgttcg aaaaacgaac atttacagtc attgtcaatt
     2641 tagtctctga agaatatgta tcagcactaa ttgccatcgg tgttaattga tatcctataa
     2701 tttcaccctc aagatgcata tcaccacctt tttttaaaat ttgcaaacgc gtttgcttgg
     2761 tgtatgcgtc tctcaatgcc tctccaaaag actgtgccag aggtggatat attaattctg
     2821 cagtatttgg aaaatctgag attgaaattg tctttgtttt tgaataatct atcgatgacc
     2881 cattaaattt gtatgaaata gtacatgata caaaagtaat agatattaca cttacagcca
     2941 gccataatgc tattttcgtt ttccttaccg acattccctt taacacaaca ctatccttaa
     3001 tcaattccat attctttaat tttgcgatac aaagtccttt ctgagatttg caattcatct
     3061 gccgctgctt tgcgtttacc tctatgtctt tctaatgttt gtttaatcat ttgcctctcc
     3121 atatcctcca gcgacaaagg tttaggactt tctaattcgt gatattcttc tgcatcctga
     3181 taactttcaa catcatcgac atgactgaca aattgtgctg tatcgcgaac aactttatca
     3241 cttttataat caacggctgt agccggactt gtaataattg tatcgctttg acttaaaaaa
     3301 ttaggagaat aatgaacctc tgcactttga acatcgggct gtgacccact cattatatca
     3361 tttacaagct ttttaaggtc gttcatatcc ttcttcatat cgaaaagcac ctgataaaga
     3421 atttctctct cactattaaa tgacttttga tcattgccgg aagaagaaaa taatgccggc
     3481 agacgctcca tatcatcttt aggcagataa gctcgcagta tttgcgccgt aatttctctg
     3541 gattgctcaa taaccgatat ttgttcagta atatttttta gttgacgtac atttccgttc
     3601 caataataat ttgacaggat attttttgcc tcctcggtca attttacggc aggcatacgg
     3661 tatttttcag caaaatcaga tgcaaacttg cgaaataaca atactatatc ctctttcctg
     3721 tcacgcaatg ccggaacagc aattggtaca gtatttaacc ggtaaaataa atcttcacga
     3781 aacttgccgt ccctggttgc ctgagacata ttcaaatttg ttgcagcaac aacacgaaca
     3841 ttcgttttta aggttttaga tgatccaact tttataaatt cacctgtttc aagcacccgt
     3901 aataatctaa cctgagtaga gagagggagc tcaccaactt catccagaaa tatagttcca
     3961 ccatcggcta cttcaaaata cccttttcta tcagctgttg cacctgtaaa tgatcccttc
     4021 tcatgcccaa ataattccga atcaatagtt ccttccggaa ttgctccaca gttaacagca
     4081 atgtatggcc catgtttccg atggctgtaa aaatgtataa tctgaggaaa attttcttta
     4141 ccaactccac tttcaccggt tatcaataca gataaatcag taggagcaac ttgtactgct
     4201 atatcaattg ctctattcag caattcagat gttccaatga ttccgaatcg ttgctttacc
     4261 gcttgtattt ctgaatgttg cataaaattg aatttattaa tctgtaatta tgacataaaa
     4321 acatgacaaa attactaata attatagaaa ttgagtatta attattcaaa aaaagaaagc
     4381 acaatcgttc gtcgttcaat aatacaaaaa aggaagtgaa aaattccact tccttttttg
     4441 tattattgat atcagattta ttttgtttta cccttcattg cttttgtaat tccttcactt
     4501 gcctttttag cgttagcgtt agtcggatca atagccaaaa tttttgtcca ataagtcatt
     4561 gattgagtat tatctttttg cagcaaataa taataaccca aatagctgta acattctaca
     4621 agcactgtat taaattt
//
LOCUS       DATDNM010000908         2202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_533426, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000908 DATDNM010000000
VERSION     DATDNM010000908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_533426"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..700
                     /locus_tag="VI413_15070"
     CDS             <1..700
                     /locus_tag="VI413_15070"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6915998.1"
                     /translation="RMIQYYTAIAAINGGKHDKAIAICEDLKDKNYETKTVYQLLYEE
                     YVKQKDTVNYVNTLKEGLQKFPSDAWFLQNLINHYIFSGKTKDALAYLTTAIEREPNM
                     AQYRYVKGNLDESLGNADDAIASFDKAIELDPTMADAYAGKGRLYYNKAVKMSDEANK
                     IKDNKLYNAEMKKVDAVFKQSIPYFQKAAEMKPKDLEIKRTLKVLYYRLKKEPEYEAK
                     YDAISKEIDEASKQ"
     gene            870..1040
                     /locus_tag="VI413_15075"
     CDS             870..1040
                     /locus_tag="VI413_15075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6915999.1"
                     /translation="MQVVHEVESWNSEGIVARVRPLLEGVNNNAAVLQTKGIKSAFIA
                     ELTHLADDITVR"
     gene            1096..1266
                     /locus_tag="VI413_15080"
     CDS             1096..1266
                     /locus_tag="VI413_15080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6916000.1"
                     /translation="MFNQLWDLNVLITDTGKALYKGVDATKLNDYTQTAILKRIGISK
                     GDKADVAEAPKA"
     gene            complement(1349..>2202)
                     /locus_tag="VI413_15085"
     CDS             complement(1349..>2202)
                     /locus_tag="VI413_15085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6916001.1"
                     /translation="QYDTTKISSANKYTISSADFDSISSSIGLAKNAYLKYFSSTYSP
                     DFYIPLFLKRVKYPYAKAGDIKLIRYLYSSSSASKTDVYTFDGTNWIKYNTTVLSKAK
                     FIFKNKKWEFIDSDIFMGLYDGIGEFKAINVVGDQVWGWDSYKYMKMTGYVSGAYFTN
                     EDWLVSPPMNLTQRLTPWLTFMHVGRYFGDTGTSTDKMRAAITVWISTTSDGTTINPA
                     DWKQLTIPEAGYPSGANWTFITSTPISLASYAKKDNVRIAFKYMSSGSDGAAGTWEVK
                     NVYVFEK"
BASE COUNT          752 a          375 c          409 g          666 t
ORIGIN      
        1 tcgtatgatt caatattata ctgctatcgc agcaatcaat ggaggaaaac atgataaggc
       61 aatagctatt tgcgaagatt taaaagataa aaactacgaa acaaaaactg tttatcaatt
      121 gctttatgaa gaatatgtaa aacaaaaaga tacggtaaat tacgtgaata cgctgaaaga
      181 aggtcttcag aagttccctt ctgatgcatg gtttttgcag aatttgatta accattatat
      241 tttctccgga aaaacaaaag atgcgttagc ataccttaca actgcaattg aacgtgaacc
      301 taatatggct cagtatcgct atgtgaaagg taatttggat gaatctttag gcaatgctga
      361 tgatgctatt gcttcgtttg acaaagcaat agagttggac cctacgatgg cagatgctta
      421 tgcaggaaaa ggtcgcttgt attacaataa agcggtgaaa atgtcggatg aagccaataa
      481 aatcaaagac aacaagcttt acaatgctga aatgaagaaa gtagatgctg tgtttaagca
      541 atctattcca tatttccaaa aggcagctga aatgaagcca aaagatcttg aaatcaaacg
      601 tacacttaag gttttatact accgtttgaa aaaagagcct gaatatgaag ctaaatacga
      661 tgctatttct aaggaaatag atgaagcttc aaaacaataa attaaagaag tattataaaa
      721 aggccattcg ggaaactgaa tggccttttt tgtgtttata taaatgtctc gtcctgaaat
      781 agcattatac tataaagaaa ccttatggaa atcaaatcaa aaatttcata tttaaaacga
      841 acacaaaagg attagaactt atcctccaaa tgcaagtagt tcatgaagtc gaaagctgga
      901 attcggaagg catagtggcc cgggtacgtc ccttgctgga gggtgtaaac aataatgctg
      961 ctgtactcca aactaagggg attaaatcgg cttttatagc tgaattgacc cacttggccg
     1021 atgatataac agttaggtaa cgatcaaaac ttcaaaatta cagaacgaaa ccgtcatact
     1081 gacgagaata ttgctgtgtt caaccagttg tgggatttga atgttttgat taccgatacg
     1141 ggcaaagcac tctataaggg cgtggatgct accaagctta acgattatac ccagacagct
     1201 atccttaaac gaataggtat atctaaaggt gacaaagccg atgttgccga agctccgaaa
     1261 gcctgatagt aaactgatat acataaaaat cccctcaaag ttttgatgct ttgaggggat
     1321 ttattattta gtgatattaa ttgaataact atttctcaaa tacataaaca tttttcactt
     1381 cccatgtacc tgccgctcca tctgatccgc tgctcatata tttaaaagca atacgtacat
     1441 tatctttttt tgcatatgaa gctaaactaa tgggggttga ggtaataaat gtccagtttg
     1501 ctccgctagg atatcccgct tcgggtatag ttagttgttt ccaatctgct ggattgatcg
     1561 ttgttccatc gctggttgtt gatatccaaa cagttattgc ggctcgcatt ttgtctgtac
     1621 ttgtaccagt atcaccaaaa taacgtccta catgcataaa tgttagccaa ggagttaatc
     1681 tttgagtgag gttcataggt ggtgaaacaa gccagtcttc attcgtaaaa tatgcacctg
     1741 aaacataccc ggtcattttc atgtatttat agctatccca accccatact tgatctccta
     1801 caacattaat tgctttgaac tcgccaattc catcgtataa tcccataaaa atatcagagt
     1861 ctataaattc ccatttttta ttcttgaaaa taaattttgc tttagaaaga actgtagtat
     1921 tgtattttat ccagttcgtg ccatcaaaag tataaacatc tgttttgctt gccgaagaag
     1981 atgaatataa ataacggata agttttatat ctcctgcttt agcgtaagga tatttcactc
     2041 tctttaaaaa taatggaata taaaaatccg ggctatatgt tgaagagaag tactttaaat
     2101 aggcattttt agcaagacca atacttgatg atatagagtc gaaatcggct gaagatatag
     2161 tatatttgtt agcagatgaa atctttgtag tgtcatattg aa
//
LOCUS       DATDNM010000909         2770 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Paludibacter sp. isolate SMAG_U437 k141_106028, whole
            genome shotgun sequence.
ACCESSION   DATDNM010000909 DATDNM010000000
VERSION     DATDNM010000909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962637
            Sequence Read Archive: SRR25158288
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Paludibacter sp. (soil metagenome)
  ORGANISM  Paludibacter sp.
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales;
            Paludibacteraceae; Paludibacter.
REFERENCE   1  (bases 1 to 2770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/15/2024 00:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,020
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2770
                     /organism="Paludibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106028"
                     /isolate="SMAG_U437"
                     /isolation_source="soil"
                     /db_xref="taxon:1898105"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.16 N 119.39 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..589
                     /locus_tag="VI413_15090"
     CDS             <1..589
                     /locus_tag="VI413_15090"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018108487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEY6916002.1"
                     /translation="AVVNGGEIVENFSLQQYVGEKYVVFFFYPADFTFVCPTELIAFE
                     EKASEFASRNTVIIGASTDSEFSHWKWLQTPQNQGGIQGVKYPLVVDQSLNISKDYDV
                     LIGSDEYDEEGNVVLVGEPKAYRGLFLIDKQGVVRHQLVNDLPLGRNVDEVLRLIDAL
                     QFTEEYGEVCPANWKKGEKALIATQEGIASYLSAK"
     gene            814..2025
                     /locus_tag="VI413_15095"
     CDS             814..2025
                     /locus_tag="VI413_15095"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyloxyacyl hydrolase"
                     /protein_id="HEY6916003.1"
                     /translation="MKANLSKISLILILIISSISTFAQDSRAQLPLALRNAYTEVNIG
                     YINYPFSLTQFAPNLGYNFQSVEVPHVAVRLILYGYEFNKYLSAQLSYMRPVIWVHYF
                     YDKNSFNYNSSVWMNIGGLTLKPQLPIGKRFSIYGEAGWGIITRHGFNAPQSPHEPLV
                     TNANYSTILLGAGLKYQANDHWAWQLSTTYSPENKSVDQPATTFLSAGFQYKLLKVSK
                     EKLEKAANTGYIHPANLIQIGYSSNLLGYGVNNALEKACLFWGGDAEVRQGISINYQR
                     NIFHSAKYFSLNLGVSAGLWQTNISKQNFYALSVYPLFRYDFLHTKPVDAYFYYSVAG
                     PSYISDIILDGKDTGKHFTFQDTMGAGVFFGEKRTYNAELKIGHYSNGNIFPRNGAVK
                     IPLSLNVGYTF"
     gene            2079..>2770
                     /locus_tag="VI413_15100"
     CDS             2079..>2770
                     /locus_tag="VI413_15100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008781391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase domain-containing protein"
                     /protein_id="HEY6916004.1"
                     /translation="MLVKTFGAAVQGINATIVTIEVNVSQGIRFLHVGLPDNAVKESH
                     ERIASALNYTGNSMPRKQIIINMAPADIRKEGSAYDLPMAIGIMAADDKLISEELDKY
                     VIMGELSLDGGLQPIKGILPIAIKAREEGFKGFILPKQNAREAAVVNNLDVYGVENIT
                     EVIDFFKGNSQLEPTVVNTREEFFSNLNHIEINFADVKGQESVKRALEVAAAGGHNII
                     MVGPPGAGKSMLA"
BASE COUNT          892 a          506 c          529 g          843 t
ORIGIN      
        1 agccgtagta aatggaggtg aaattgtaga aaatttctca ttgcaacagt atgtaggcga
       61 aaaatatgta gtatttttct tttatcctgc agattttact tttgtatgcc caacggaatt
      121 gatcgcattc gaagaaaagg cttctgaatt tgcatctcgc aacacagtaa ttatcggtgc
      181 ttcaaccgat tctgaatttt cacattggaa atggcttcaa actccacaaa atcaaggtgg
      241 tattcaaggt gtaaaatatc ctcttgttgt tgaccaatcg ttgaatatat caaaagatta
      301 tgacgtattg attggatcag atgaatatga cgaagaaggg aatgtggtat tggtcggtga
      361 gcctaaagca tatcgcgggc ttttcttgat tgacaagcaa ggtgttgtac gtcatcaatt
      421 agtaaacgac cttccactag gacgtaatgt tgacgaagta ctccgtttaa ttgacgcact
      481 ccaatttaca gaagaatatg gcgaagtttg ccctgcaaac tggaaaaaag gagaaaaagc
      541 attaattgca actcaggaag gaattgcaag ctatctttct gcaaaataat ttttttgaaa
      601 atcatttaaa caaagcgctg taacagttat gttatggcgc tttttatttc agaaacataa
      661 atctgatata attttaaaat ttatttcggc ataaaaagta aaaatatcga actatttaac
      721 tatttttgca aacattaaac ctttaagata cgtataaagg tgactctttt attcacaatc
      781 cacttttcga atatatttaa atcatttctc ttgatgaaag ccaacttgtc caaaatcagt
      841 ctaattctca ttttaatcat cagttcgatc tcaacatttg ctcaggattc cagagctcaa
      901 ttaccattag cattgcgtaa tgcttatacc gaagtaaaca ttggttatat caattatcca
      961 tttagtttaa ctcaatttgc gcccaatctt ggctacaatt ttcaaagtgt agaagtgccg
     1021 catgtagctg tgcgtcttat cctctatgga tatgaattta acaaatatct ttctgctcaa
     1081 ttgtcatata tgcgccctgt gatttgggtt cattatttct atgataagaa ttctttcaat
     1141 tacaattctt ctgtatggat gaatattgga ggattgactt taaaacctca attgccaatt
     1201 ggaaaaagat tttcgatcta tggcgaagcc ggttggggaa ttatcacaag gcatggtttt
     1261 aatgcccctc aatcccccca tgagcctctt gttacaaatg caaattactc tacaatttta
     1321 ctcggagccg gcttaaaata tcaagcaaac gaccactggg catggcaatt aagcacgaca
     1381 tattcgcctg aaaataaatc tgtagaccaa ccggcaacta catttttatc tgctggattt
     1441 caatacaagt tactgaaagt atcaaaagag aaactggaaa aagcagctaa taccggctac
     1501 attcacccgg caaatcttat tcaaatcggt tattccagca atctgctagg ctatggagtt
     1561 aataatgcat tggaaaaagc ttgtttattt tggggaggag acgcagaagt gcgtcaaggg
     1621 atttcaatta attaccaacg taatatattt cacagtgcta agtacttttc tttaaattta
     1681 ggtgttagtg cggggttatg gcagacaaac attagcaaac aaaatttcta tgcgttgtcc
     1741 gtttatccgc tattcaggta tgactttttg cacacaaaac ctgttgatgc atatttttac
     1801 tattctgttg ctggtccttc ctacatatct gatattatat tggatggaaa agacactgga
     1861 aaacatttta catttcaaga cactatggga gccggtgttt tctttggtga aaaaaggact
     1921 tacaatgccg aattaaaaat tggccattat tcgaacggaa atattttccc tagaaatggt
     1981 gccgttaaaa tacctttgtc tctaaacgtt ggctatacat tttaaacagt aactgagaaa
     2041 aaataattaa tcccaattga catataaatc taaaaactat gctcgtaaaa acctttggcg
     2101 cagctgtaca aggaataaat gccaccattg ttactattga agtcaatgtc agtcagggaa
     2161 ttcgcttttt acacgtaggc ttgcccgata atgcagtaaa agaaagtcat gaacgaattg
     2221 cttcggcgct taattatacc ggcaatagca tgccccgcaa gcaaataatt atcaacatgg
     2281 ctccggctga catccgcaaa gaaggttctg catacgattt acccatggca ataggtatca
     2341 tggcagccga tgacaagctc atttccgaag aactcgacaa atatgtaatt atgggtgagc
     2401 tgtcgttgga tggaggtttg cagcccatca aaggaattct accaattgcc ataaaagctc
     2461 gtgaagaggg ttttaaagga tttatacttc ccaaacaaaa tgcccgtgaa gctgctgtgg
     2521 tcaacaatct ggatgtttac ggtgtagaaa acataacaga agtgattgat tttttcaaag
     2581 gtaattcaca gttggagcca actgttgtca atacccgtga agaatttttc agcaacctga
     2641 atcacatcga aataaatttt gccgacgtaa aaggtcagga gagtgtaaag cgggcactgg
     2701 aagtagcagc tgctggtgga cacaatatta tcatggtcgg acctcccgga gcaggaaaat
     2761 caatgttagc
//
